Query 042597
Match_columns 693
No_of_seqs 289 out of 3267
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 13:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-40 6.6E-45 364.5 16.6 294 6-314 124-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.5E-34 8.6E-39 318.5 19.5 268 10-307 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 9.9E-34 3.4E-38 345.0 25.0 293 9-313 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.3E-32 1.5E-36 303.0 23.5 289 9-310 123-448 (591)
5 4fmz_A Internalin; leucine ric 99.9 3E-23 1E-27 215.6 18.3 280 336-649 41-328 (347)
6 4fmz_A Internalin; leucine ric 99.9 1.2E-22 4.2E-27 211.0 20.4 281 329-642 56-344 (347)
7 3o6n_A APL1; leucine-rich repe 99.9 1E-22 3.5E-27 215.0 17.8 282 336-651 42-337 (390)
8 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.4E-26 211.3 21.9 290 323-652 17-316 (477)
9 3oja_B Anopheles plasmodium-re 99.9 6.9E-22 2.4E-26 220.3 17.7 282 337-652 49-344 (597)
10 3v47_A TOLL-like receptor 5B a 99.9 2.3E-21 7.8E-26 209.4 20.8 322 322-661 15-400 (455)
11 4fcg_A Uncharacterized protein 99.9 4.2E-22 1.5E-26 204.3 14.1 239 359-673 79-318 (328)
12 1o6v_A Internalin A; bacterial 99.9 4.6E-21 1.6E-25 207.2 21.3 278 330-641 59-363 (466)
13 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-21 1.3E-25 215.6 20.6 148 322-472 16-168 (606)
14 3o6n_A APL1; leucine-rich repe 99.9 2.4E-21 8.3E-26 204.5 15.9 276 329-642 57-350 (390)
15 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-21 9.2E-26 207.4 15.7 272 333-650 36-326 (457)
16 1o6v_A Internalin A; bacterial 99.9 5.8E-21 2E-25 206.5 17.6 269 336-647 43-324 (466)
17 3oja_B Anopheles plasmodium-re 99.9 3.7E-21 1.3E-25 214.4 15.6 270 335-642 71-356 (597)
18 2id5_A Lingo-1, leucine rich r 99.8 6.6E-21 2.3E-25 206.9 16.0 273 334-642 51-331 (477)
19 4ecn_A Leucine-rich repeat pro 99.8 1.6E-20 5.5E-25 214.2 17.8 224 334-581 443-708 (876)
20 4eco_A Uncharacterized protein 99.8 1E-20 3.5E-25 212.1 15.6 226 334-582 201-469 (636)
21 3bz5_A Internalin-J, INLJ; leu 99.8 1.6E-20 5.6E-25 201.3 16.4 271 328-647 53-354 (457)
22 2z63_A TOLL-like receptor 4, v 99.8 7E-20 2.4E-24 203.8 21.6 146 322-471 12-163 (570)
23 3t6q_A CD180 antigen; protein- 99.8 5.8E-20 2E-24 205.9 20.0 149 322-472 17-168 (606)
24 2z81_A CD282 antigen, TOLL-lik 99.8 9.2E-20 3.1E-24 201.8 20.9 146 326-472 14-163 (549)
25 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-21 1.2E-25 196.3 8.5 250 339-649 50-309 (313)
26 3v47_A TOLL-like receptor 5B a 99.8 3.7E-20 1.3E-24 199.8 16.9 275 334-642 49-406 (455)
27 3rgz_A Protein brassinosteroid 99.8 3.3E-20 1.1E-24 212.9 16.4 286 339-652 394-725 (768)
28 4fcg_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 191.7 11.9 217 339-640 81-310 (328)
29 1xku_A Decorin; proteoglycan, 99.8 8.9E-20 3.1E-24 187.8 16.7 264 338-642 30-304 (330)
30 3rgz_A Protein brassinosteroid 99.8 5.5E-20 1.9E-24 211.1 16.5 299 337-653 176-512 (768)
31 2z80_A TOLL-like receptor 2, v 99.8 5.7E-20 2E-24 191.1 15.0 250 339-642 52-312 (353)
32 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-19 4.2E-24 203.3 18.5 134 334-469 51-193 (606)
33 3j0a_A TOLL-like receptor 5; m 99.8 2.4E-19 8.3E-24 207.9 21.5 300 321-649 8-379 (844)
34 2z63_A TOLL-like receptor 4, v 99.8 1.9E-19 6.5E-24 200.2 19.1 135 334-470 47-190 (570)
35 2z7x_B TOLL-like receptor 1, v 99.8 2.9E-19 9.9E-24 196.3 19.9 137 325-469 8-150 (520)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.1E-19 1.1E-23 197.8 19.4 320 321-650 35-491 (562)
37 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.4E-24 186.7 15.0 126 340-469 34-159 (332)
38 4ecn_A Leucine-rich repeat pro 99.8 3.1E-19 1.1E-23 203.6 18.6 286 337-652 489-826 (876)
39 4eco_A Uncharacterized protein 99.8 1E-19 3.6E-24 203.9 14.0 282 334-652 268-586 (636)
40 2z66_A Variable lymphocyte rec 99.8 1.6E-19 5.3E-24 183.9 13.8 243 342-642 10-259 (306)
41 1ziw_A TOLL-like receptor 3; i 99.8 5.7E-19 1.9E-23 200.6 19.9 148 322-472 9-160 (680)
42 3t6q_A CD180 antigen; protein- 99.8 1.9E-19 6.4E-24 201.8 15.2 272 340-649 255-540 (606)
43 2z7x_B TOLL-like receptor 1, v 99.8 1E-18 3.5E-23 191.9 18.2 310 334-650 40-462 (520)
44 2z81_A CD282 antigen, TOLL-lik 99.8 5.1E-19 1.7E-23 195.8 15.3 131 335-467 46-182 (549)
45 1xku_A Decorin; proteoglycan, 99.8 1.7E-18 5.7E-23 178.2 18.1 278 326-641 40-329 (330)
46 3zyi_A Leucine-rich repeat-con 99.8 6E-19 2.1E-23 189.8 15.1 129 339-468 75-207 (452)
47 3zyj_A Leucine-rich repeat-con 99.8 9.4E-19 3.2E-23 187.6 15.6 129 339-468 64-196 (440)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4E-18 1.4E-22 188.9 20.4 128 339-471 31-160 (562)
49 3g06_A SSPH2 (leucine-rich rep 99.8 4.1E-18 1.4E-22 188.1 19.3 248 325-642 48-295 (622)
50 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.2E-23 178.8 15.3 254 343-652 35-297 (353)
51 1ogq_A PGIP-2, polygalacturona 99.8 9.4E-19 3.2E-23 178.3 10.4 231 361-650 50-287 (313)
52 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-17 8.4E-22 185.7 23.0 145 324-472 38-188 (635)
53 3o53_A Protein LRIM1, AGAP0063 99.8 2.6E-19 9E-24 182.9 5.7 239 339-646 34-277 (317)
54 3zyj_A Leucine-rich repeat-con 99.8 2.8E-18 9.6E-23 183.9 13.7 238 341-617 45-289 (440)
55 3zyi_A Leucine-rich repeat-con 99.8 3E-18 1E-22 184.3 13.9 239 341-617 56-300 (452)
56 1ziw_A TOLL-like receptor 3; i 99.8 1.3E-17 4.3E-22 189.6 19.6 297 340-651 249-579 (680)
57 3j0a_A TOLL-like receptor 5; m 99.8 7.1E-18 2.4E-22 195.6 17.7 290 333-650 42-399 (844)
58 3o53_A Protein LRIM1, AGAP0063 99.8 8.8E-20 3E-24 186.4 1.3 234 344-644 15-250 (317)
59 1ozn_A Reticulon 4 receptor; N 99.8 7.6E-18 2.6E-22 169.4 15.3 126 342-470 14-142 (285)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.6E-23 174.9 9.7 215 325-584 19-239 (285)
61 2z66_A Variable lymphocyte rec 99.7 1.6E-18 5.6E-23 176.3 9.7 237 324-618 14-259 (306)
62 2ft3_A Biglycan; proteoglycan, 99.7 8.1E-18 2.8E-22 173.2 13.7 246 361-650 33-282 (332)
63 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.8E-22 169.9 14.1 195 333-582 35-229 (308)
64 3g06_A SSPH2 (leucine-rich rep 99.7 3.7E-17 1.3E-21 180.4 18.2 244 339-654 40-283 (622)
65 1wwl_A Monocyte differentiatio 99.7 7.9E-19 2.7E-23 178.9 4.4 245 337-641 41-306 (312)
66 1jl5_A Outer protein YOPM; leu 99.7 2.1E-17 7.3E-22 176.9 15.6 120 339-470 131-250 (454)
67 3rfs_A Internalin B, repeat mo 99.7 1.7E-17 5.9E-22 165.4 13.6 209 333-632 35-247 (272)
68 3oja_A Leucine-rich immune mol 99.7 3.9E-18 1.3E-22 184.5 8.6 99 527-639 170-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.7 6.3E-17 2.2E-21 161.8 14.8 214 325-582 15-236 (276)
70 1h6u_A Internalin H; cell adhe 99.7 1.5E-17 5.2E-22 168.8 10.1 210 343-623 23-232 (308)
71 3oja_A Leucine-rich immune mol 99.7 6.1E-18 2.1E-22 183.0 7.0 237 337-618 32-273 (487)
72 1jl5_A Outer protein YOPM; leu 99.7 2.5E-16 8.7E-21 168.5 18.2 258 339-648 111-373 (454)
73 2xwt_C Thyrotropin receptor; s 99.7 5.7E-17 2E-21 158.3 10.6 199 361-644 31-239 (239)
74 4g8a_A TOLL-like receptor 4; l 99.7 1.6E-16 5.5E-21 179.0 15.6 114 334-449 71-189 (635)
75 3rfs_A Internalin B, repeat mo 99.7 3.6E-17 1.2E-21 163.0 7.6 224 339-654 19-245 (272)
76 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.5E-21 159.6 12.4 201 335-582 6-207 (290)
77 1wwl_A Monocyte differentiatio 99.7 3.2E-17 1.1E-21 167.0 7.3 221 340-617 64-306 (312)
78 2o6q_A Variable lymphocyte rec 99.7 2.8E-16 9.7E-21 156.4 13.3 196 340-581 17-216 (270)
79 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.4E-21 155.2 10.3 138 329-470 23-169 (239)
80 1p9a_G Platelet glycoprotein I 99.7 5.4E-16 1.8E-20 155.8 14.5 109 357-471 6-114 (290)
81 2z62_A TOLL-like receptor 4, v 99.7 9.1E-16 3.1E-20 153.4 14.8 121 347-470 15-137 (276)
82 2o6q_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 151.4 15.6 105 362-471 17-123 (270)
83 1h6t_A Internalin B; cell adhe 99.6 8.6E-16 2.9E-20 154.4 13.8 171 335-582 42-212 (291)
84 2ca6_A RAN GTPase-activating p 99.6 8.3E-17 2.8E-21 169.4 5.2 138 357-506 28-198 (386)
85 2ast_B S-phase kinase-associat 99.6 3.7E-16 1.3E-20 161.1 8.8 249 341-649 49-310 (336)
86 1m9s_A Internalin B; cell inva 99.6 2.9E-15 9.9E-20 165.2 16.2 124 336-467 40-163 (605)
87 2qen_A Walker-type ATPase; unk 99.6 5.8E-14 2E-18 145.5 23.4 267 9-307 11-348 (350)
88 4glp_A Monocyte differentiatio 99.6 3.2E-16 1.1E-20 159.5 5.6 225 339-617 64-304 (310)
89 3m19_A Variable lymphocyte rec 99.6 7.2E-15 2.5E-19 144.5 13.8 129 340-470 15-144 (251)
90 1h6t_A Internalin B; cell adhe 99.6 1.9E-15 6.4E-20 152.0 9.2 184 343-618 28-211 (291)
91 2ast_B S-phase kinase-associat 99.6 1.2E-15 4E-20 157.4 7.6 223 362-641 48-282 (336)
92 1z7x_W Ribonuclease inhibitor; 99.6 7.2E-16 2.5E-20 166.5 4.9 283 337-645 54-383 (461)
93 1m9s_A Internalin B; cell inva 99.6 2.8E-15 9.6E-20 165.3 9.5 193 337-584 19-211 (605)
94 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.9E-19 150.6 13.4 235 343-640 13-255 (350)
95 4ay9_X Follicle-stimulating ho 99.6 1.2E-14 4.2E-19 150.4 13.4 235 322-616 14-255 (350)
96 1z7x_W Ribonuclease inhibitor; 99.6 1E-15 3.5E-20 165.3 5.2 277 340-642 86-409 (461)
97 2fna_A Conserved hypothetical 99.6 4.5E-13 1.5E-17 139.2 24.4 263 9-306 12-355 (357)
98 3goz_A Leucine-rich repeat-con 99.6 4.8E-15 1.6E-19 154.3 9.4 124 346-470 5-151 (362)
99 3m19_A Variable lymphocyte rec 99.5 4.5E-14 1.5E-18 138.7 12.9 168 322-506 19-190 (251)
100 1xeu_A Internalin C; cellular 99.5 9.5E-15 3.2E-19 144.4 7.8 121 339-468 19-139 (263)
101 2ca6_A RAN GTPase-activating p 99.5 1.3E-14 4.3E-19 152.7 9.0 238 334-618 27-314 (386)
102 4glp_A Monocyte differentiatio 99.5 1.1E-14 3.8E-19 148.0 6.7 201 338-582 90-306 (310)
103 4ezg_A Putative uncharacterize 99.5 1.3E-13 4.6E-18 129.8 13.0 151 336-506 41-192 (197)
104 4ezg_A Putative uncharacterize 99.5 6.7E-14 2.3E-18 131.9 10.6 142 325-470 52-194 (197)
105 3ogk_B Coronatine-insensitive 99.5 3E-14 1E-18 158.9 9.2 275 337-646 190-527 (592)
106 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.7E-18 150.0 13.2 181 362-624 60-247 (571)
107 3e6j_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 132.6 12.1 142 326-470 28-172 (229)
108 2o6s_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 128.0 12.4 122 343-467 11-134 (208)
109 2v9t_B SLIT homolog 2 protein 99.4 3E-13 1E-17 129.7 11.2 128 339-468 32-163 (220)
110 3ogk_B Coronatine-insensitive 99.4 1.4E-13 4.8E-18 153.5 9.4 276 338-645 163-476 (592)
111 1xeu_A Internalin C; cellular 99.4 3.7E-13 1.3E-17 132.9 11.1 153 329-506 31-183 (263)
112 3goz_A Leucine-rich repeat-con 99.4 6.4E-14 2.2E-18 145.7 5.8 155 339-506 22-207 (362)
113 2v9t_B SLIT homolog 2 protein 99.4 2.6E-13 9.1E-18 130.1 9.7 149 342-506 14-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.4 5.2E-13 1.8E-17 128.0 11.1 127 340-468 33-164 (220)
115 2p1m_B Transport inhibitor res 99.4 1.6E-13 5.5E-18 153.1 8.4 85 545-643 429-518 (594)
116 3cvr_A Invasion plasmid antige 99.4 4.5E-13 1.5E-17 146.0 11.6 188 340-588 60-248 (571)
117 1w5s_A Origin recognition comp 99.4 4.2E-12 1.4E-16 134.6 18.3 268 10-292 22-371 (412)
118 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 124.6 12.4 141 328-471 18-162 (208)
119 2ell_A Acidic leucine-rich nuc 99.4 5.8E-13 2E-17 121.9 9.0 130 339-471 24-161 (168)
120 2xot_A Amphoterin-induced prot 99.4 7E-13 2.4E-17 137.7 10.7 127 342-471 21-150 (361)
121 2v70_A SLIT-2, SLIT homolog 2 99.4 7.2E-13 2.4E-17 127.1 10.0 148 342-506 14-164 (220)
122 2je0_A Acidic leucine-rich nuc 99.4 6.3E-13 2.2E-17 119.0 8.7 124 339-465 17-148 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.4 5.6E-13 1.9E-17 123.0 7.4 126 338-467 18-150 (176)
124 2p1m_B Transport inhibitor res 99.4 5.2E-13 1.8E-17 149.0 8.5 130 337-467 103-245 (594)
125 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 125.0 10.5 149 340-506 20-170 (229)
126 2xot_A Amphoterin-induced prot 99.3 2.5E-12 8.5E-17 133.5 11.5 147 323-472 24-178 (361)
127 2qby_B CDC6 homolog 3, cell di 99.3 1.9E-10 6.6E-15 120.5 22.9 264 10-291 20-338 (384)
128 1a9n_A U2A', U2A'; complex (nu 99.3 2.3E-12 7.9E-17 118.9 7.0 144 348-507 6-152 (176)
129 2v1u_A Cell division control p 99.3 1.5E-10 5.1E-15 121.5 21.2 267 10-291 19-350 (387)
130 2o6r_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 114.2 10.3 128 341-471 9-138 (177)
131 1w8a_A SLIT protein; signaling 99.3 8.7E-12 3E-16 116.7 9.0 128 342-471 11-140 (192)
132 2je0_A Acidic leucine-rich nuc 99.3 4.4E-12 1.5E-16 113.5 6.6 109 358-471 14-127 (149)
133 2ell_A Acidic leucine-rich nuc 99.3 7.3E-12 2.5E-16 114.5 8.2 134 358-506 21-158 (168)
134 1dce_A Protein (RAB geranylger 99.2 3.8E-12 1.3E-16 139.4 6.0 105 362-472 442-548 (567)
135 2wfh_A SLIT homolog 2 protein 99.2 1.8E-11 6.1E-16 114.5 9.6 124 342-469 13-138 (193)
136 2qby_A CDC6 homolog 1, cell di 99.2 8.1E-10 2.8E-14 115.8 22.4 267 9-291 19-347 (386)
137 4b8c_D Glucose-repressible alc 99.2 1E-11 3.6E-16 140.4 7.9 87 379-468 218-304 (727)
138 4b8c_D Glucose-repressible alc 99.2 1.5E-11 5.3E-16 139.0 7.5 112 357-472 220-331 (727)
139 2chg_A Replication factor C sm 99.2 1.7E-10 6E-15 110.8 13.6 169 10-192 17-206 (226)
140 2wfh_A SLIT homolog 2 protein 99.2 5.1E-11 1.8E-15 111.4 8.4 124 363-505 12-136 (193)
141 1njg_A DNA polymerase III subu 99.2 3.4E-10 1.2E-14 110.4 14.8 170 10-193 23-231 (250)
142 1dce_A Protein (RAB geranylger 99.2 4.1E-11 1.4E-15 131.3 8.9 120 340-463 442-566 (567)
143 1fnn_A CDC6P, cell division co 99.1 3.5E-09 1.2E-13 111.0 22.9 265 10-292 17-351 (389)
144 1w8a_A SLIT protein; signaling 99.1 1.9E-10 6.5E-15 107.5 9.0 120 324-445 15-139 (192)
145 1ds9_A Outer arm dynein; leuci 99.1 3E-12 1E-16 120.7 -4.2 109 357-470 44-153 (198)
146 2o6r_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 104.0 9.9 117 326-444 16-136 (177)
147 3sb4_A Hypothetical leucine ri 99.0 5.6E-10 1.9E-14 114.1 11.0 284 337-661 23-326 (329)
148 2r9u_A Variable lymphocyte rec 99.0 4.2E-10 1.4E-14 103.1 8.3 99 365-468 16-116 (174)
149 3g39_A Variable lymphocyte rec 99.0 4.5E-10 1.6E-14 102.6 8.2 100 364-468 12-113 (170)
150 2r9u_A Variable lymphocyte rec 99.0 6.3E-10 2.2E-14 102.0 8.9 106 342-450 15-122 (174)
151 1sxj_B Activator 1 37 kDa subu 99.0 2E-09 6.8E-14 109.8 12.5 171 10-191 21-211 (323)
152 1ds9_A Outer arm dynein; leuci 99.0 2E-11 6.9E-16 114.9 -3.4 130 360-507 17-152 (198)
153 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.8E-14 100.0 8.3 101 341-443 11-113 (170)
154 3sb4_A Hypothetical leucine ri 98.9 4.1E-09 1.4E-13 107.7 9.9 80 338-418 48-157 (329)
155 1hqc_A RUVB; extended AAA-ATPa 98.9 1.8E-08 6.1E-13 102.7 14.4 163 10-194 12-215 (324)
156 4fdw_A Leucine rich hypothetic 98.9 4E-08 1.4E-12 102.7 17.0 248 357-675 132-393 (401)
157 1iqp_A RFCS; clamp loader, ext 98.8 9.8E-09 3.3E-13 104.8 11.3 174 10-194 25-216 (327)
158 3bos_A Putative DNA replicatio 98.8 7E-08 2.4E-12 93.6 14.4 162 10-191 28-218 (242)
159 1jbk_A CLPB protein; beta barr 98.8 1.2E-08 4.3E-13 95.1 8.7 100 10-112 22-127 (195)
160 2ifg_A High affinity nerve gro 98.7 1.5E-08 5E-13 104.5 8.7 99 343-442 12-113 (347)
161 1jr3_A DNA polymerase III subu 98.7 1.2E-07 4E-12 98.7 14.3 168 10-191 16-222 (373)
162 4fdw_A Leucine rich hypothetic 98.7 1.9E-07 6.6E-12 97.5 15.5 118 340-465 136-256 (401)
163 3te6_A Regulatory protein SIR3 98.7 2.1E-07 7.2E-12 92.6 13.7 149 11-159 21-213 (318)
164 2ifg_A High affinity nerve gro 98.6 5.6E-08 1.9E-12 100.1 9.6 102 364-470 11-116 (347)
165 2chq_A Replication factor C sm 98.6 8.7E-08 3E-12 97.3 9.9 172 10-192 17-206 (319)
166 1sxj_A Activator 1 95 kDa subu 98.6 4.3E-07 1.5E-11 98.3 14.0 173 10-191 39-254 (516)
167 3pvs_A Replication-associated 98.6 7.6E-07 2.6E-11 93.9 15.0 169 10-192 26-217 (447)
168 3h4m_A Proteasome-activating n 98.5 5.8E-07 2E-11 89.6 13.3 168 10-190 17-231 (285)
169 3eie_A Vacuolar protein sortin 98.5 1.6E-06 5.6E-11 87.8 15.0 168 10-190 18-228 (322)
170 1sxj_D Activator 1 41 kDa subu 98.5 3.9E-07 1.3E-11 93.9 10.4 170 10-190 37-235 (353)
171 3un9_A NLR family member X1; l 98.5 4.7E-08 1.6E-12 101.1 3.2 106 361-468 72-194 (372)
172 1d2n_A N-ethylmaleimide-sensit 98.5 4.6E-06 1.6E-10 82.3 17.3 185 10-211 33-263 (272)
173 2z4s_A Chromosomal replication 98.5 6.8E-07 2.3E-11 94.4 11.9 153 33-191 130-307 (440)
174 3uk6_A RUVB-like 2; hexameric 98.5 2.1E-06 7.3E-11 88.9 15.4 48 10-57 44-94 (368)
175 3pfi_A Holliday junction ATP-d 98.4 2.7E-06 9.1E-11 87.0 15.3 163 10-192 29-229 (338)
176 3un9_A NLR family member X1; l 98.4 4.1E-08 1.4E-12 101.5 1.5 131 339-471 101-253 (372)
177 1l8q_A Chromosomal replication 98.4 1.6E-06 5.5E-11 88.0 13.2 169 10-189 11-207 (324)
178 1sxj_E Activator 1 40 kDa subu 98.4 1.1E-06 3.7E-11 90.6 11.5 178 10-192 14-239 (354)
179 1xwi_A SKD1 protein; VPS4B, AA 98.4 4E-06 1.4E-10 84.7 15.3 176 3-191 3-224 (322)
180 3d8b_A Fidgetin-like protein 1 98.4 1.9E-06 6.6E-11 88.5 13.1 169 10-191 84-296 (357)
181 2p65_A Hypothetical protein PF 98.4 3.6E-07 1.2E-11 84.5 6.8 46 10-57 22-67 (187)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.8E-06 1.6E-10 81.7 15.2 172 10-191 6-223 (262)
183 3syl_A Protein CBBX; photosynt 98.4 2.1E-06 7.3E-11 86.5 12.9 158 11-178 32-235 (309)
184 3vfd_A Spastin; ATPase, microt 98.4 4.9E-06 1.7E-10 86.7 15.2 170 10-191 115-327 (389)
185 3b9p_A CG5977-PA, isoform A; A 98.4 8.1E-06 2.8E-10 81.7 16.3 169 10-191 21-234 (297)
186 3u61_B DNA polymerase accessor 98.3 8.2E-06 2.8E-10 82.8 14.6 164 10-193 26-219 (324)
187 3e4g_A ATP synthase subunit S, 98.3 4E-07 1.4E-11 81.8 4.1 89 548-646 61-154 (176)
188 2qp9_X Vacuolar protein sortin 98.3 8.4E-06 2.9E-10 83.5 14.4 168 10-191 51-262 (355)
189 2ra8_A Uncharacterized protein 98.2 2.4E-06 8.1E-11 87.5 9.5 38 427-468 167-204 (362)
190 4fs7_A Uncharacterized protein 98.2 5.2E-06 1.8E-10 86.8 12.3 105 357-466 67-194 (394)
191 1in4_A RUVB, holliday junction 98.2 1.5E-05 5E-10 81.1 15.2 163 10-191 25-224 (334)
192 4b4t_J 26S protease regulatory 98.2 2.8E-05 9.5E-10 79.3 16.9 161 10-183 148-354 (405)
193 1sxj_C Activator 1 40 kDa subu 98.2 8.2E-06 2.8E-10 83.3 12.3 166 10-187 25-209 (340)
194 3n70_A Transport activator; si 98.2 1.4E-06 4.9E-11 76.7 5.5 88 11-113 2-89 (145)
195 2zan_A Vacuolar protein sortin 98.1 1.8E-05 6E-10 83.7 14.0 171 10-191 134-346 (444)
196 3cf0_A Transitional endoplasmi 98.1 2.4E-05 8.2E-10 78.2 13.4 164 10-185 15-223 (301)
197 4b4t_L 26S protease subunit RP 98.1 2.3E-05 8E-10 81.3 13.1 161 10-183 181-387 (437)
198 4b4t_H 26S protease regulatory 98.1 3E-05 1E-09 80.2 13.7 161 10-183 209-415 (467)
199 1qvr_A CLPB protein; coiled co 98.1 9E-06 3.1E-10 93.6 11.0 168 10-180 170-369 (854)
200 3pxg_A Negative regulator of g 98.0 1E-05 3.5E-10 86.2 9.6 141 10-159 180-340 (468)
201 4fs7_A Uncharacterized protein 98.0 2.6E-05 8.9E-10 81.4 11.9 272 336-639 68-374 (394)
202 1a5t_A Delta prime, HOLB; zinc 98.0 4.3E-05 1.5E-09 77.6 13.1 158 16-189 8-204 (334)
203 1r6b_X CLPA protein; AAA+, N-t 98.0 2.5E-05 8.7E-10 88.9 12.5 146 10-158 186-363 (758)
204 4b4t_M 26S protease regulatory 98.0 2.6E-05 8.7E-10 80.9 11.3 161 10-183 181-387 (434)
205 4b4t_K 26S protease regulatory 98.0 4.9E-05 1.7E-09 78.7 13.4 161 10-183 172-379 (428)
206 3e4g_A ATP synthase subunit S, 98.0 5.3E-06 1.8E-10 74.4 5.3 88 359-447 59-154 (176)
207 4b4t_I 26S protease regulatory 98.0 3.9E-05 1.3E-09 78.5 12.1 161 10-183 182-388 (437)
208 3hu3_A Transitional endoplasmi 98.0 3.5E-05 1.2E-09 82.0 11.8 168 10-189 204-414 (489)
209 1ofh_A ATP-dependent HSL prote 97.9 5.6E-05 1.9E-09 76.0 12.4 48 10-57 15-74 (310)
210 1lv7_A FTSH; alpha/beta domain 97.9 0.00011 3.7E-09 71.6 13.3 168 10-189 12-224 (257)
211 2ra8_A Uncharacterized protein 97.9 5.5E-06 1.9E-10 84.8 3.9 109 358-469 169-291 (362)
212 3rw6_A Nuclear RNA export fact 97.8 4.2E-06 1.5E-10 81.1 2.0 59 383-443 168-231 (267)
213 2ce7_A Cell division protein F 97.8 0.00023 7.8E-09 75.1 14.9 162 10-183 16-221 (476)
214 2bjv_A PSP operon transcriptio 97.8 3.6E-05 1.2E-09 75.4 8.2 48 10-57 6-53 (265)
215 2w58_A DNAI, primosome compone 97.8 2E-05 6.9E-10 73.7 5.9 60 10-72 25-90 (202)
216 4gt6_A Cell surface protein; l 97.8 0.00053 1.8E-08 71.4 17.2 120 340-465 65-190 (394)
217 1io0_A Tropomodulin; LRR prote 97.8 1.3E-05 4.3E-10 73.8 3.9 110 357-468 32-162 (185)
218 3pxi_A Negative regulator of g 97.8 7.6E-05 2.6E-09 84.9 11.0 141 10-159 180-340 (758)
219 4gt6_A Cell surface protein; l 97.7 0.00035 1.2E-08 72.8 14.9 106 357-466 59-169 (394)
220 2r62_A Cell division protease 97.6 2.1E-05 7.2E-10 77.3 3.4 161 10-183 11-218 (268)
221 1ojl_A Transcriptional regulat 97.6 0.00026 9E-09 70.6 11.5 48 10-57 2-49 (304)
222 3ec2_A DNA replication protein 97.6 2.9E-05 9.8E-10 71.2 3.8 48 10-57 10-62 (180)
223 4fcw_A Chaperone protein CLPB; 97.6 0.00013 4.5E-09 73.3 8.9 48 10-57 17-71 (311)
224 1io0_A Tropomodulin; LRR prote 97.6 3E-05 1E-09 71.3 3.3 105 338-442 35-161 (185)
225 2gno_A DNA polymerase III, gam 97.6 0.00027 9.2E-09 70.3 10.4 133 14-157 1-152 (305)
226 3pxi_A Negative regulator of g 97.5 0.00016 5.6E-09 82.1 9.5 93 10-112 491-591 (758)
227 3cf2_A TER ATPase, transitiona 97.5 0.00018 6.1E-09 80.4 9.5 162 10-183 204-407 (806)
228 3rw6_A Nuclear RNA export fact 97.5 7.3E-05 2.5E-09 72.4 5.4 78 359-438 168-257 (267)
229 4h09_A Hypothetical leucine ri 97.5 0.0028 9.6E-08 65.5 17.2 124 335-466 42-167 (379)
230 2kjq_A DNAA-related protein; s 97.5 0.0001 3.6E-09 64.8 4.9 78 10-112 18-95 (149)
231 2dhr_A FTSH; AAA+ protein, hex 97.3 0.0012 4.2E-08 69.9 12.3 158 10-183 31-236 (499)
232 1ixz_A ATP-dependent metallopr 97.3 0.00093 3.2E-08 64.8 10.4 161 10-183 16-221 (254)
233 1iy2_A ATP-dependent metallopr 97.2 0.0014 4.6E-08 64.6 10.6 161 10-183 40-245 (278)
234 2x8a_A Nuclear valosin-contain 97.1 0.0062 2.1E-07 59.5 14.1 140 10-158 10-192 (274)
235 2c9o_A RUVB-like 1; hexameric 97.1 0.00059 2E-08 72.4 7.3 96 10-112 37-138 (456)
236 3t15_A Ribulose bisphosphate c 97.1 0.0015 5.1E-08 64.7 9.5 26 32-57 35-60 (293)
237 1ypw_A Transitional endoplasmi 97.1 0.00078 2.7E-08 76.5 8.0 162 10-183 204-407 (806)
238 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00048 1.6E-08 67.7 4.7 70 33-112 123-194 (331)
239 3hws_A ATP-dependent CLP prote 97.0 0.0009 3.1E-08 68.7 6.8 47 11-57 16-75 (363)
240 3co5_A Putative two-component 96.9 0.0002 6.7E-09 62.6 0.9 48 10-57 4-51 (143)
241 1um8_A ATP-dependent CLP prote 96.9 0.0023 7.8E-08 66.1 8.8 48 10-57 21-96 (376)
242 2qgz_A Helicase loader, putati 96.8 0.00088 3E-08 66.8 4.9 48 10-57 124-176 (308)
243 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0062 2.1E-07 69.2 12.1 48 10-57 458-512 (758)
244 3m6a_A ATP-dependent protease 96.5 0.0042 1.4E-07 67.2 8.1 46 12-57 83-132 (543)
245 3cf2_A TER ATPase, transitiona 96.5 0.0037 1.3E-07 69.9 7.4 92 10-112 477-582 (806)
246 4h09_A Hypothetical leucine ri 96.4 0.011 3.6E-07 61.0 10.0 104 357-465 236-341 (379)
247 3c8u_A Fructokinase; YP_612366 96.4 0.0036 1.2E-07 58.4 5.6 41 17-57 6-46 (208)
248 1rz3_A Hypothetical protein rb 96.3 0.005 1.7E-07 57.1 6.1 44 14-57 2-46 (201)
249 3ice_A Transcription terminati 95.9 0.023 7.9E-07 57.1 9.0 36 21-57 163-198 (422)
250 2r44_A Uncharacterized protein 95.9 0.0047 1.6E-07 62.4 4.2 44 10-57 27-70 (331)
251 3io5_A Recombination and repai 95.9 0.017 5.8E-07 56.5 7.6 77 35-112 30-123 (333)
252 1u94_A RECA protein, recombina 95.8 0.013 4.6E-07 59.2 7.1 38 32-72 62-99 (356)
253 3hr8_A Protein RECA; alpha and 95.8 0.011 3.7E-07 59.6 6.3 78 32-112 60-151 (356)
254 1odf_A YGR205W, hypothetical 3 95.8 0.011 3.8E-07 58.0 6.2 42 16-57 10-55 (290)
255 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0067 2.3E-07 64.4 4.8 44 10-57 22-65 (500)
256 2zr9_A Protein RECA, recombina 95.7 0.019 6.5E-07 58.1 7.6 38 32-72 60-97 (349)
257 3fwy_A Light-independent proto 95.7 0.0086 2.9E-07 59.6 4.9 39 31-72 46-84 (314)
258 1xp8_A RECA protein, recombina 95.7 0.012 4.3E-07 59.7 6.1 77 32-111 73-163 (366)
259 1qvr_A CLPB protein; coiled co 95.7 0.01 3.5E-07 68.2 6.1 47 11-57 559-612 (854)
260 2b8t_A Thymidine kinase; deoxy 95.6 0.017 5.8E-07 54.0 6.4 27 31-57 10-36 (223)
261 1qhx_A CPT, protein (chloramph 95.6 0.0063 2.2E-07 55.1 3.3 24 34-57 4-27 (178)
262 3tlx_A Adenylate kinase 2; str 95.6 0.015 5.1E-07 55.6 6.0 44 14-57 10-53 (243)
263 3kb2_A SPBC2 prophage-derived 95.5 0.0071 2.4E-07 54.3 3.4 24 34-57 2-25 (173)
264 2ga8_A Hypothetical 39.9 kDa p 95.4 0.019 6.7E-07 57.3 6.4 46 12-57 1-48 (359)
265 1g5t_A COB(I)alamin adenosyltr 95.4 0.013 4.4E-07 53.2 4.5 26 32-57 27-52 (196)
266 3vaa_A Shikimate kinase, SK; s 95.3 0.0098 3.3E-07 55.0 3.6 26 32-57 24-49 (199)
267 3lw7_A Adenylate kinase relate 95.2 0.0098 3.3E-07 53.5 3.3 23 34-57 2-24 (179)
268 1g8p_A Magnesium-chelatase 38 95.2 0.0076 2.6E-07 61.3 2.9 46 10-57 24-69 (350)
269 1jr3_D DNA polymerase III, del 95.2 0.13 4.3E-06 52.0 12.0 148 31-191 16-186 (343)
270 3trf_A Shikimate kinase, SK; a 95.2 0.01 3.5E-07 54.1 3.4 25 33-57 5-29 (185)
271 1ly1_A Polynucleotide kinase; 95.2 0.012 4E-07 53.3 3.6 22 34-55 3-24 (181)
272 3uie_A Adenylyl-sulfate kinase 95.2 0.013 4.5E-07 54.2 4.0 27 31-57 23-49 (200)
273 1tue_A Replication protein E1; 95.1 0.02 6.9E-07 52.2 4.9 40 17-57 43-82 (212)
274 1zp6_A Hypothetical protein AT 95.1 0.012 4E-07 54.0 3.5 26 32-57 8-33 (191)
275 1gvn_B Zeta; postsegregational 95.1 0.024 8.1E-07 55.7 5.8 27 31-57 31-57 (287)
276 3jvv_A Twitching mobility prot 95.0 0.026 8.7E-07 57.2 6.0 83 32-116 122-212 (356)
277 1kag_A SKI, shikimate kinase I 95.0 0.011 3.6E-07 53.3 2.8 24 34-57 5-28 (173)
278 2rhm_A Putative kinase; P-loop 95.0 0.014 4.9E-07 53.4 3.8 26 32-57 4-29 (193)
279 1nks_A Adenylate kinase; therm 95.0 0.013 4.5E-07 53.6 3.6 24 34-57 2-25 (194)
280 1kgd_A CASK, peripheral plasma 95.0 0.014 4.7E-07 53.0 3.4 25 33-57 5-29 (180)
281 3umf_A Adenylate kinase; rossm 94.9 0.017 5.8E-07 53.8 4.0 27 31-57 27-53 (217)
282 1zuh_A Shikimate kinase; alpha 94.9 0.014 4.8E-07 52.2 3.4 26 32-57 6-31 (168)
283 2hf9_A Probable hydrogenase ni 94.9 0.029 9.9E-07 52.8 5.8 39 17-57 24-62 (226)
284 3tqc_A Pantothenate kinase; bi 94.9 0.026 8.8E-07 56.1 5.5 45 13-57 70-116 (321)
285 3tau_A Guanylate kinase, GMP k 94.9 0.015 5.1E-07 54.2 3.6 26 32-57 7-32 (208)
286 1kht_A Adenylate kinase; phosp 94.9 0.015 5E-07 53.2 3.5 24 34-57 4-27 (192)
287 1ex7_A Guanylate kinase; subst 94.9 0.0091 3.1E-07 54.2 1.9 24 34-57 2-25 (186)
288 3iij_A Coilin-interacting nucl 94.9 0.013 4.4E-07 53.1 3.0 25 33-57 11-35 (180)
289 3dm5_A SRP54, signal recogniti 94.9 0.071 2.4E-06 55.2 8.8 26 32-57 99-124 (443)
290 3t61_A Gluconokinase; PSI-biol 94.8 0.013 4.3E-07 54.3 2.9 25 33-57 18-42 (202)
291 1ukz_A Uridylate kinase; trans 94.8 0.018 6.2E-07 53.3 4.0 27 31-57 13-39 (203)
292 2ze6_A Isopentenyl transferase 94.8 0.016 5.4E-07 55.8 3.7 24 34-57 2-25 (253)
293 4eun_A Thermoresistant glucoki 94.8 0.016 5.4E-07 53.6 3.6 27 31-57 27-53 (200)
294 1sky_E F1-ATPase, F1-ATP synth 94.8 0.059 2E-06 56.0 7.9 37 34-72 152-188 (473)
295 1y63_A LMAJ004144AAA protein; 94.8 0.018 6.1E-07 52.4 3.6 25 32-56 9-33 (184)
296 2c95_A Adenylate kinase 1; tra 94.8 0.017 5.7E-07 53.1 3.5 26 32-57 8-33 (196)
297 1tev_A UMP-CMP kinase; ploop, 94.8 0.018 6.1E-07 52.8 3.7 25 33-57 3-27 (196)
298 3l0o_A Transcription terminati 94.8 0.084 2.9E-06 53.0 8.6 36 21-57 164-199 (427)
299 1v5w_A DMC1, meiotic recombina 94.7 0.15 5.1E-06 51.4 10.8 43 31-74 120-166 (343)
300 3rfe_A Platelet glycoprotein I 94.7 0.028 9.5E-07 47.7 4.5 51 389-442 12-65 (130)
301 1via_A Shikimate kinase; struc 94.7 0.014 4.8E-07 52.6 2.8 23 35-57 6-28 (175)
302 1knq_A Gluconate kinase; ALFA/ 94.7 0.022 7.4E-07 51.3 4.1 26 32-57 7-32 (175)
303 3cm0_A Adenylate kinase; ATP-b 94.7 0.021 7.2E-07 51.9 3.9 25 33-57 4-28 (186)
304 1uj2_A Uridine-cytidine kinase 94.7 0.02 6.7E-07 55.2 3.8 27 31-57 20-46 (252)
305 2iyv_A Shikimate kinase, SK; t 94.6 0.014 4.8E-07 53.1 2.6 24 34-57 3-26 (184)
306 3tr0_A Guanylate kinase, GMP k 94.6 0.019 6.7E-07 53.1 3.6 25 33-57 7-31 (205)
307 2qor_A Guanylate kinase; phosp 94.6 0.015 5.3E-07 53.9 2.8 26 32-57 11-36 (204)
308 2jaq_A Deoxyguanosine kinase; 94.6 0.019 6.5E-07 53.1 3.5 23 35-57 2-24 (205)
309 1xjc_A MOBB protein homolog; s 94.6 0.021 7E-07 50.8 3.4 26 32-57 3-28 (169)
310 3rfe_A Platelet glycoprotein I 94.5 0.033 1.1E-06 47.2 4.6 34 433-467 32-65 (130)
311 2plr_A DTMP kinase, probable t 94.5 0.022 7.7E-07 53.0 3.8 24 34-57 5-28 (213)
312 1uf9_A TT1252 protein; P-loop, 94.5 0.023 7.7E-07 52.5 3.8 26 31-56 6-31 (203)
313 2bbw_A Adenylate kinase 4, AK4 94.5 0.02 6.9E-07 54.9 3.5 26 32-57 26-51 (246)
314 2wsm_A Hydrogenase expression/ 94.5 0.031 1.1E-06 52.5 4.8 42 14-57 13-54 (221)
315 3p32_A Probable GTPase RV1496/ 94.5 0.07 2.4E-06 54.2 7.7 39 19-57 65-103 (355)
316 1ye8_A Protein THEP1, hypothet 94.5 0.022 7.5E-07 51.4 3.5 23 35-57 2-24 (178)
317 2z43_A DNA repair and recombin 94.5 0.075 2.6E-06 53.2 7.7 43 32-74 106-151 (324)
318 1cke_A CK, MSSA, protein (cyti 94.5 0.021 7.1E-07 53.9 3.5 24 34-57 6-29 (227)
319 2bwj_A Adenylate kinase 5; pho 94.5 0.02 7E-07 52.7 3.3 25 33-57 12-36 (199)
320 1g41_A Heat shock protein HSLU 94.5 0.033 1.1E-06 57.7 5.2 48 10-57 15-74 (444)
321 2cdn_A Adenylate kinase; phosp 94.4 0.025 8.4E-07 52.3 3.9 26 32-57 19-44 (201)
322 2bdt_A BH3686; alpha-beta prot 94.4 0.023 7.8E-07 51.9 3.6 23 34-56 3-25 (189)
323 3ney_A 55 kDa erythrocyte memb 94.4 0.022 7.7E-07 52.0 3.4 26 32-57 18-43 (197)
324 1e6c_A Shikimate kinase; phosp 94.4 0.018 6.2E-07 51.7 2.8 24 34-57 3-26 (173)
325 4gp7_A Metallophosphoesterase; 94.4 0.02 7E-07 51.3 3.1 23 32-54 8-30 (171)
326 2pt5_A Shikimate kinase, SK; a 94.4 0.023 7.9E-07 50.7 3.5 23 35-57 2-24 (168)
327 1aky_A Adenylate kinase; ATP:A 94.4 0.022 7.6E-07 53.5 3.5 26 32-57 3-28 (220)
328 2j41_A Guanylate kinase; GMP, 94.4 0.023 7.9E-07 52.7 3.6 25 33-57 6-30 (207)
329 2qt1_A Nicotinamide riboside k 94.4 0.024 8.1E-07 52.7 3.7 27 31-57 19-45 (207)
330 3asz_A Uridine kinase; cytidin 94.4 0.024 8.1E-07 52.9 3.6 26 32-57 5-30 (211)
331 1qf9_A UMP/CMP kinase, protein 94.4 0.024 8.1E-07 51.9 3.6 25 33-57 6-30 (194)
332 2yvu_A Probable adenylyl-sulfa 94.4 0.027 9.3E-07 51.2 3.9 26 32-57 12-37 (186)
333 3a00_A Guanylate kinase, GMP k 94.4 0.018 6E-07 52.6 2.6 24 34-57 2-25 (186)
334 2vli_A Antibiotic resistance p 94.3 0.017 5.8E-07 52.4 2.4 25 33-57 5-29 (183)
335 2p5t_B PEZT; postsegregational 94.3 0.037 1.3E-06 53.3 4.9 27 31-57 30-56 (253)
336 2pbr_A DTMP kinase, thymidylat 94.3 0.025 8.4E-07 51.8 3.5 23 35-57 2-24 (195)
337 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.026 9E-07 54.5 3.8 25 33-57 4-28 (260)
338 2grj_A Dephospho-COA kinase; T 94.3 0.025 8.7E-07 51.7 3.4 26 32-57 11-36 (192)
339 2if2_A Dephospho-COA kinase; a 94.3 0.023 7.9E-07 52.6 3.2 22 34-55 2-23 (204)
340 3e70_C DPA, signal recognition 94.3 0.067 2.3E-06 53.4 6.8 26 32-57 128-153 (328)
341 3fb4_A Adenylate kinase; psych 94.2 0.026 8.7E-07 52.8 3.5 23 35-57 2-24 (216)
342 1jjv_A Dephospho-COA kinase; P 94.2 0.025 8.5E-07 52.5 3.3 22 34-55 3-24 (206)
343 1nn5_A Similar to deoxythymidy 94.2 0.028 9.4E-07 52.5 3.6 25 33-57 9-33 (215)
344 2wwf_A Thymidilate kinase, put 94.1 0.026 9E-07 52.5 3.4 25 33-57 10-34 (212)
345 1zu4_A FTSY; GTPase, signal re 94.1 0.075 2.6E-06 52.9 6.8 26 32-57 104-129 (320)
346 1vma_A Cell division protein F 94.1 0.081 2.8E-06 52.2 7.0 42 16-57 81-128 (306)
347 3dl0_A Adenylate kinase; phosp 94.1 0.027 9.3E-07 52.7 3.4 23 35-57 2-24 (216)
348 2z0h_A DTMP kinase, thymidylat 94.1 0.029 1E-06 51.5 3.5 23 35-57 2-24 (197)
349 1u0j_A DNA replication protein 94.1 0.067 2.3E-06 51.1 6.0 35 22-56 93-127 (267)
350 1lvg_A Guanylate kinase, GMP k 94.0 0.023 7.9E-07 52.4 2.7 25 33-57 4-28 (198)
351 2i1q_A DNA repair and recombin 94.0 0.11 3.8E-06 51.9 8.0 26 32-57 97-122 (322)
352 2zts_A Putative uncharacterize 94.0 0.052 1.8E-06 52.0 5.3 39 32-72 29-67 (251)
353 1htw_A HI0065; nucleotide-bind 94.0 0.037 1.3E-06 48.7 3.8 27 31-57 31-57 (158)
354 1zd8_A GTP:AMP phosphotransfer 94.0 0.028 9.5E-07 53.1 3.2 25 33-57 7-31 (227)
355 4dkx_A RAS-related protein RAB 94.0 0.048 1.6E-06 50.9 4.7 22 35-56 15-36 (216)
356 2v54_A DTMP kinase, thymidylat 93.9 0.031 1.1E-06 51.6 3.4 25 33-57 4-28 (204)
357 2pez_A Bifunctional 3'-phospho 93.9 0.037 1.3E-06 49.9 3.8 26 32-57 4-29 (179)
358 2r2a_A Uncharacterized protein 93.9 0.029 1E-06 51.5 3.0 22 35-56 7-28 (199)
359 2jeo_A Uridine-cytidine kinase 93.8 0.037 1.3E-06 52.9 3.9 27 31-57 23-49 (245)
360 4e22_A Cytidylate kinase; P-lo 93.8 0.035 1.2E-06 53.4 3.6 26 32-57 26-51 (252)
361 3dzd_A Transcriptional regulat 93.8 0.15 5E-06 52.0 8.5 48 10-57 129-176 (368)
362 1znw_A Guanylate kinase, GMP k 93.8 0.034 1.2E-06 51.7 3.4 27 31-57 18-44 (207)
363 1zak_A Adenylate kinase; ATP:A 93.8 0.029 1E-06 52.7 3.0 26 32-57 4-29 (222)
364 4a1f_A DNAB helicase, replicat 93.8 0.076 2.6E-06 53.1 6.0 38 32-72 45-82 (338)
365 3aez_A Pantothenate kinase; tr 93.8 0.037 1.3E-06 54.9 3.8 27 31-57 88-114 (312)
366 3k1j_A LON protease, ATP-depen 93.7 0.077 2.6E-06 58.2 6.6 44 10-57 41-84 (604)
367 3sr0_A Adenylate kinase; phosp 93.7 0.038 1.3E-06 51.1 3.5 23 35-57 2-24 (206)
368 3foz_A TRNA delta(2)-isopenten 93.7 0.16 5.5E-06 49.6 8.0 26 32-57 9-34 (316)
369 1m7g_A Adenylylsulfate kinase; 93.6 0.045 1.5E-06 50.9 4.0 27 31-57 23-49 (211)
370 1z6g_A Guanylate kinase; struc 93.6 0.032 1.1E-06 52.3 2.8 26 32-57 22-47 (218)
371 1j8m_F SRP54, signal recogniti 93.5 0.088 3E-06 51.8 6.0 25 33-57 98-122 (297)
372 1s96_A Guanylate kinase, GMP k 93.5 0.04 1.4E-06 51.5 3.3 26 32-57 15-40 (219)
373 3r20_A Cytidylate kinase; stru 93.5 0.043 1.5E-06 51.7 3.5 25 33-57 9-33 (233)
374 3ake_A Cytidylate kinase; CMP 93.5 0.042 1.5E-06 50.9 3.5 23 35-57 4-26 (208)
375 1gtv_A TMK, thymidylate kinase 93.5 0.022 7.4E-07 53.2 1.4 23 35-57 2-24 (214)
376 3d3q_A TRNA delta(2)-isopenten 93.5 0.045 1.5E-06 54.5 3.7 24 34-57 8-31 (340)
377 3b9q_A Chloroplast SRP recepto 93.5 0.086 2.9E-06 52.0 5.8 26 32-57 99-124 (302)
378 3exa_A TRNA delta(2)-isopenten 93.4 0.049 1.7E-06 53.3 3.8 25 33-57 3-27 (322)
379 1e4v_A Adenylate kinase; trans 93.4 0.043 1.5E-06 51.2 3.4 23 35-57 2-24 (214)
380 2f6r_A COA synthase, bifunctio 93.4 0.047 1.6E-06 53.4 3.8 24 32-55 74-97 (281)
381 2dr3_A UPF0273 protein PH0284; 93.4 0.053 1.8E-06 51.8 4.1 38 32-72 22-59 (247)
382 2ck3_D ATP synthase subunit be 93.4 0.26 9E-06 51.0 9.3 39 32-72 152-190 (482)
383 1a7j_A Phosphoribulokinase; tr 93.4 0.027 9.3E-07 55.3 2.0 26 32-57 4-29 (290)
384 1svm_A Large T antigen; AAA+ f 93.4 0.095 3.2E-06 53.3 6.0 27 31-57 167-193 (377)
385 2xb4_A Adenylate kinase; ATP-b 93.4 0.045 1.6E-06 51.5 3.5 23 35-57 2-24 (223)
386 3kl4_A SRP54, signal recogniti 93.3 0.11 3.6E-06 53.9 6.4 26 32-57 96-121 (433)
387 1rj9_A FTSY, signal recognitio 93.3 0.067 2.3E-06 52.8 4.8 26 32-57 101-126 (304)
388 1vht_A Dephospho-COA kinase; s 93.3 0.053 1.8E-06 50.7 3.9 23 33-55 4-26 (218)
389 3be4_A Adenylate kinase; malar 93.3 0.045 1.5E-06 51.2 3.3 24 34-57 6-29 (217)
390 3vr4_D V-type sodium ATPase su 93.2 0.16 5.6E-06 52.3 7.4 25 33-57 151-175 (465)
391 1g8f_A Sulfate adenylyltransfe 93.2 0.068 2.3E-06 56.5 4.8 47 11-57 373-419 (511)
392 1n0w_A DNA repair protein RAD5 93.2 0.1 3.5E-06 49.5 5.8 40 32-72 23-66 (243)
393 2i3b_A HCR-ntpase, human cance 93.2 0.043 1.5E-06 50.0 2.8 24 34-57 2-25 (189)
394 4a74_A DNA repair and recombin 93.1 0.049 1.7E-06 51.4 3.4 26 32-57 24-49 (231)
395 3end_A Light-independent proto 93.1 0.076 2.6E-06 52.7 4.9 39 31-72 39-77 (307)
396 1pgv_A TMD-1, tropomodulin TMD 93.1 0.071 2.4E-06 48.5 4.2 84 358-441 38-135 (197)
397 3crm_A TRNA delta(2)-isopenten 93.1 0.053 1.8E-06 53.6 3.6 24 34-57 6-29 (323)
398 3a8t_A Adenylate isopentenyltr 93.1 0.056 1.9E-06 53.6 3.8 26 32-57 39-64 (339)
399 1np6_A Molybdopterin-guanine d 93.1 0.055 1.9E-06 48.4 3.4 25 33-57 6-30 (174)
400 2ehv_A Hypothetical protein PH 93.1 0.046 1.6E-06 52.3 3.2 25 32-56 29-53 (251)
401 1ak2_A Adenylate kinase isoenz 93.1 0.056 1.9E-06 51.2 3.7 25 33-57 16-40 (233)
402 3cmu_A Protein RECA, recombina 93.1 0.086 3E-06 64.5 6.0 77 31-110 1425-1515(2050)
403 2w0m_A SSO2452; RECA, SSPF, un 93.1 0.053 1.8E-06 51.2 3.5 25 33-57 23-47 (235)
404 3nwj_A ATSK2; P loop, shikimat 93.0 0.045 1.5E-06 52.3 2.8 25 33-57 48-72 (250)
405 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.084 2.9E-06 52.9 4.9 76 33-112 171-252 (330)
406 2px0_A Flagellar biosynthesis 92.9 0.059 2E-06 53.0 3.6 26 32-57 104-129 (296)
407 2og2_A Putative signal recogni 92.9 0.12 4E-06 52.2 5.8 26 32-57 156-181 (359)
408 2onk_A Molybdate/tungstate ABC 92.9 0.058 2E-06 51.3 3.4 26 31-57 23-48 (240)
409 3lnc_A Guanylate kinase, GMP k 92.9 0.039 1.3E-06 52.2 2.2 25 33-57 27-52 (231)
410 3b85_A Phosphate starvation-in 92.8 0.082 2.8E-06 48.9 4.3 24 33-56 22-45 (208)
411 2qmh_A HPR kinase/phosphorylas 92.8 0.061 2.1E-06 48.7 3.3 25 33-57 34-58 (205)
412 1sq5_A Pantothenate kinase; P- 92.8 0.063 2.1E-06 53.3 3.7 27 31-57 78-104 (308)
413 2f1r_A Molybdopterin-guanine d 92.8 0.037 1.3E-06 49.4 1.8 24 34-57 3-26 (171)
414 1ypw_A Transitional endoplasmi 92.7 0.013 4.3E-07 66.6 -1.7 48 10-57 477-535 (806)
415 2xxa_A Signal recognition part 92.7 0.22 7.5E-06 51.8 7.8 42 16-57 76-124 (433)
416 2cvh_A DNA repair and recombin 92.7 0.083 2.9E-06 49.3 4.3 35 32-72 19-53 (220)
417 3tif_A Uncharacterized ABC tra 92.6 0.06 2.1E-06 51.0 3.1 35 32-70 30-64 (235)
418 3bh0_A DNAB-like replicative h 92.5 0.12 4.1E-06 51.4 5.3 38 32-72 67-104 (315)
419 2pcj_A ABC transporter, lipopr 92.4 0.06 2.1E-06 50.6 2.7 35 32-70 29-63 (224)
420 3zvl_A Bifunctional polynucleo 92.3 0.075 2.6E-06 55.2 3.7 27 31-57 256-282 (416)
421 4eaq_A DTMP kinase, thymidylat 92.3 0.092 3.2E-06 49.5 4.0 26 32-57 25-50 (229)
422 2ged_A SR-beta, signal recogni 92.3 0.17 5.7E-06 46.0 5.7 27 31-57 46-72 (193)
423 2cbz_A Multidrug resistance-as 92.3 0.068 2.3E-06 50.7 3.1 26 32-57 30-55 (237)
424 4gzl_A RAS-related C3 botulinu 92.3 0.08 2.7E-06 48.9 3.5 42 14-57 13-54 (204)
425 2eyu_A Twitching motility prot 92.2 0.092 3.2E-06 50.6 3.9 27 31-57 23-49 (261)
426 1ltq_A Polynucleotide kinase; 92.2 0.08 2.7E-06 52.4 3.6 23 34-56 3-25 (301)
427 1fx0_B ATP synthase beta chain 92.2 0.4 1.4E-05 49.9 8.8 39 32-72 164-202 (498)
428 1yrb_A ATP(GTP)binding protein 92.2 0.16 5.5E-06 48.9 5.7 27 31-57 12-38 (262)
429 1tq4_A IIGP1, interferon-induc 92.2 0.091 3.1E-06 54.1 4.0 26 32-57 68-93 (413)
430 1cp2_A CP2, nitrogenase iron p 92.1 0.13 4.5E-06 49.8 5.0 36 34-72 2-37 (269)
431 2orw_A Thymidine kinase; TMTK, 92.1 0.13 4.4E-06 46.6 4.5 24 34-57 4-27 (184)
432 2v9p_A Replication protein E1; 92.1 0.083 2.9E-06 51.9 3.4 27 31-57 124-150 (305)
433 1b0u_A Histidine permease; ABC 92.0 0.077 2.6E-06 51.2 3.0 35 32-70 31-65 (262)
434 3gfo_A Cobalt import ATP-bindi 92.0 0.075 2.6E-06 51.6 2.9 35 32-70 33-67 (275)
435 1mv5_A LMRA, multidrug resista 92.0 0.086 2.9E-06 50.2 3.3 26 32-57 27-52 (243)
436 3f9v_A Minichromosome maintena 91.9 0.051 1.7E-06 59.3 1.9 49 9-57 294-351 (595)
437 2olj_A Amino acid ABC transpor 91.9 0.079 2.7E-06 51.0 3.0 35 32-70 49-83 (263)
438 2r8r_A Sensor protein; KDPD, P 91.9 0.15 5.3E-06 47.3 4.8 25 33-57 6-30 (228)
439 1oix_A RAS-related protein RAB 91.9 0.089 3E-06 48.0 3.2 25 33-57 29-53 (191)
440 1sgw_A Putative ABC transporte 91.8 0.067 2.3E-06 49.8 2.3 25 33-57 35-59 (214)
441 1q3t_A Cytidylate kinase; nucl 91.8 0.1 3.6E-06 49.4 3.7 27 31-57 14-40 (236)
442 2zu0_C Probable ATP-dependent 91.8 0.092 3.2E-06 50.8 3.4 25 32-56 45-69 (267)
443 1ji0_A ABC transporter; ATP bi 91.8 0.083 2.8E-06 50.2 3.0 35 32-70 31-65 (240)
444 1ls1_A Signal recognition part 91.7 0.14 4.8E-06 50.3 4.7 26 32-57 97-122 (295)
445 2dyk_A GTP-binding protein; GT 91.7 0.11 3.7E-06 45.5 3.5 24 34-57 2-25 (161)
446 2pze_A Cystic fibrosis transme 91.7 0.082 2.8E-06 49.8 2.9 26 32-57 33-58 (229)
447 2ocp_A DGK, deoxyguanosine kin 91.7 0.1 3.5E-06 49.7 3.6 25 33-57 2-26 (241)
448 2d2e_A SUFC protein; ABC-ATPas 91.7 0.094 3.2E-06 50.2 3.3 25 32-56 28-52 (250)
449 1vpl_A ABC transporter, ATP-bi 91.7 0.087 3E-06 50.6 3.0 35 32-70 40-74 (256)
450 4g1u_C Hemin import ATP-bindin 91.7 0.084 2.9E-06 51.0 3.0 35 32-70 36-70 (266)
451 3eph_A TRNA isopentenyltransfe 91.6 0.1 3.4E-06 53.1 3.5 24 34-57 3-26 (409)
452 1g6h_A High-affinity branched- 91.6 0.087 3E-06 50.7 3.0 35 32-70 32-66 (257)
453 2ghi_A Transport protein; mult 91.6 0.091 3.1E-06 50.6 3.1 34 32-70 45-78 (260)
454 2ff7_A Alpha-hemolysin translo 91.6 0.09 3.1E-06 50.2 3.0 35 32-70 34-68 (247)
455 1nlf_A Regulatory protein REPA 91.5 0.087 3E-06 51.5 3.0 26 32-57 29-54 (279)
456 2j37_W Signal recognition part 91.5 0.27 9.2E-06 52.0 6.8 26 32-57 100-125 (504)
457 2ixe_A Antigen peptide transpo 91.5 0.094 3.2E-06 50.8 3.1 35 32-70 44-78 (271)
458 2wji_A Ferrous iron transport 91.5 0.12 4.1E-06 45.7 3.6 23 34-56 4-26 (165)
459 2f9l_A RAB11B, member RAS onco 91.5 0.11 3.7E-06 47.7 3.4 25 33-57 5-29 (199)
460 2afh_E Nitrogenase iron protei 91.4 0.16 5.4E-06 49.8 4.7 37 33-72 2-38 (289)
461 1cr0_A DNA primase/helicase; R 91.4 0.099 3.4E-06 51.6 3.2 27 31-57 33-59 (296)
462 3cmw_A Protein RECA, recombina 91.4 0.21 7.1E-06 60.4 6.3 74 34-110 733-820 (1706)
463 3cr8_A Sulfate adenylyltranfer 91.3 0.14 4.8E-06 55.0 4.5 26 32-57 368-393 (552)
464 2yhs_A FTSY, cell division pro 91.3 0.12 4.2E-06 54.0 3.8 26 32-57 292-317 (503)
465 3q3j_B RHO-related GTP-binding 91.3 2 6.7E-05 39.6 12.0 26 32-57 26-51 (214)
466 2yz2_A Putative ABC transporte 91.3 0.1 3.4E-06 50.5 3.1 35 32-70 32-66 (266)
467 2qi9_C Vitamin B12 import ATP- 91.3 0.099 3.4E-06 49.9 2.9 26 32-57 25-50 (249)
468 3gmt_A Adenylate kinase; ssgci 91.2 0.12 4.3E-06 48.2 3.5 24 34-57 9-32 (230)
469 2p67_A LAO/AO transport system 91.2 0.35 1.2E-05 48.6 7.2 27 31-57 54-80 (341)
470 1pgv_A TMD-1, tropomodulin TMD 91.2 0.18 6E-06 45.9 4.4 104 339-442 41-167 (197)
471 3oaa_A ATP synthase subunit al 91.2 0.56 1.9E-05 48.8 8.5 25 32-56 161-186 (513)
472 2zej_A Dardarin, leucine-rich 91.2 0.092 3.2E-06 47.5 2.5 22 35-56 4-25 (184)
473 2vp4_A Deoxynucleoside kinase; 91.2 0.11 3.6E-06 49.2 3.0 26 31-56 18-43 (230)
474 4edh_A DTMP kinase, thymidylat 91.1 0.23 7.9E-06 46.0 5.2 25 33-57 6-30 (213)
475 2nq2_C Hypothetical ABC transp 91.1 0.1 3.6E-06 49.9 2.9 26 32-57 30-55 (253)
476 4hlc_A DTMP kinase, thymidylat 91.1 0.23 8E-06 45.7 5.2 24 34-57 3-26 (205)
477 2ihy_A ABC transporter, ATP-bi 91.0 0.11 3.6E-06 50.7 2.9 35 32-70 46-80 (279)
478 1fzq_A ADP-ribosylation factor 91.0 0.14 4.8E-06 46.1 3.6 26 31-56 14-39 (181)
479 2qm8_A GTPase/ATPase; G protei 91.0 0.22 7.5E-06 50.0 5.3 27 31-57 53-79 (337)
480 2c61_A A-type ATP synthase non 91.0 0.38 1.3E-05 49.9 7.1 25 33-57 152-176 (469)
481 3upu_A ATP-dependent DNA helic 91.0 0.24 8.3E-06 52.2 5.9 40 15-57 30-69 (459)
482 2yv5_A YJEQ protein; hydrolase 90.9 0.18 6.1E-06 49.8 4.5 23 34-57 166-188 (302)
483 2gks_A Bifunctional SAT/APS ki 90.9 0.23 7.9E-06 53.3 5.6 47 11-57 350-396 (546)
484 3kta_A Chromosome segregation 90.8 0.13 4.4E-06 46.4 3.1 24 34-57 27-50 (182)
485 1z2a_A RAS-related protein RAB 90.8 0.16 5.5E-06 44.7 3.8 26 32-57 4-29 (168)
486 3gqb_B V-type ATP synthase bet 90.8 0.37 1.3E-05 49.6 6.8 25 33-57 147-171 (464)
487 2wjg_A FEOB, ferrous iron tran 90.8 0.16 5.5E-06 45.8 3.8 25 32-56 6-30 (188)
488 3sop_A Neuronal-specific septi 90.8 0.13 4.4E-06 49.9 3.2 23 35-57 4-26 (270)
489 1zj6_A ADP-ribosylation factor 90.8 0.24 8.2E-06 44.7 4.9 35 19-56 5-39 (187)
490 1pzn_A RAD51, DNA repair and r 90.6 0.13 4.6E-06 51.8 3.4 26 32-57 130-155 (349)
491 2ce2_X GTPase HRAS; signaling 90.6 0.13 4.5E-06 45.1 3.0 23 35-57 5-27 (166)
492 2lkc_A Translation initiation 90.6 0.17 5.8E-06 45.2 3.7 27 31-57 6-32 (178)
493 1p5z_B DCK, deoxycytidine kina 90.6 0.095 3.3E-06 50.7 2.1 27 31-57 22-48 (263)
494 1p9r_A General secretion pathw 90.5 0.39 1.3E-05 49.6 6.7 78 31-112 165-248 (418)
495 2r9v_A ATP synthase subunit al 90.5 0.67 2.3E-05 48.4 8.4 25 32-56 174-199 (515)
496 1nij_A Hypothetical protein YJ 90.5 0.13 4.6E-06 51.1 3.2 25 32-56 3-27 (318)
497 2nzj_A GTP-binding protein REM 90.4 0.17 6E-06 44.9 3.6 26 32-57 3-28 (175)
498 1nrj_B SR-beta, signal recogni 90.4 0.17 5.7E-06 47.2 3.6 27 31-57 10-36 (218)
499 2pjz_A Hypothetical protein ST 90.4 0.13 4.6E-06 49.4 2.9 24 33-56 30-53 (263)
500 2ffh_A Protein (FFH); SRP54, s 90.4 0.23 7.9E-06 51.2 4.9 26 32-57 97-122 (425)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-40 Score=364.46 Aligned_cols=294 Identities=17% Similarity=0.244 Sum_probs=226.1
Q ss_pred cCCCCcccchHHHHHHHHHHhhhc-CCCeeEEEEEcCCCCcHHHHHHHHHh--hhccccCCCCEEEEEEEeccC--Cchh
Q 042597 6 LPVDHTVVGQELLLYRVWRCITDQ-EKNRRIIGLYGTGGVGKTTILTQVNN--NFCHQQHNFDVVIWAAVIGFS--DDKK 80 (693)
Q Consensus 6 ~p~~~~~vGr~~~~~~l~~~l~~~-~~~~~vv~i~G~~GiGKTtla~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~ 80 (693)
+|..+..|||++++++|.++|... +++.++|+|+||||+||||||+++|+ +. +++++|++++|+++.+.. +...
T Consensus 124 ~p~~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~ 202 (549)
T 2a5y_B 124 VPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFD 202 (549)
T ss_dssp CBCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHH
T ss_pred CCCCCccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHH
Confidence 454445359999999999999764 34689999999999999999999998 33 568999999999886643 1000
Q ss_pred --------------------hhhhchhHHHHHHHHHHccC-cEEEEEeCcccccch--hhh--hhhhhcccchhhhhhcC
Q 042597 81 --------------------WKEKSLQDKAADISSILSRK-KFVLLLDDIWERIDL--KEL--VSLFLTTRSVDVCDQMD 135 (693)
Q Consensus 81 --------------------~~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~--~~~--~~iliTtr~~~~~~~~~ 135 (693)
....+.+++...+++.++++ |+||||||||+..++ ... ++||||||++.++..++
T Consensus 203 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 203 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCC
T ss_pred HHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcC
Confidence 00112344578899999996 999999999998754 322 89999999999988775
Q ss_pred -Cce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhhh
Q 042597 136 -AEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRISA 213 (693)
Q Consensus 136 -~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~~ 213 (693)
... +.+++|+.+||++||.++++... .++.+.+.+++|+++|+|+||||+++|+.++.+ +|..+ ..+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHh
Confidence 323 99999999999999999976543 236677899999999999999999999998764 24433 3343332
Q ss_pred cccCCCcHHHHHHHHHhhcCCCchhhhhHHh-----------hhcccCCCCccChHHHHHHHHhc--CccCCc------h
Q 042597 214 SKFTGMDEKVFSRLKFSYDSLSTDELRSCLL-----------YCCLYPKDYEIPRRELIDYWISE--GFVDDF------N 274 (693)
Q Consensus 214 ~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l-----------~~~~f~~~~~i~~~~li~~w~~~--g~~~~~------~ 274 (693)
... . ...+...+.+||+.||+ ++|.||+ |||+||+++.++ +..|+++ |++... +
T Consensus 356 ~~~-~-~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESR-G-LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHH-C-SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hcc-c-HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 211 1 22566788999999988 8999999 999999999988 8999999 888642 3
Q ss_pred hhHHHHHHHHHccceeec---CCCcEEechHHHHHHHHHHhhc
Q 042597 275 DGCEFINDLLHACLLEEE---GDDHVKMHDMIREMLLWIACTV 314 (693)
Q Consensus 275 ~~~~~l~~L~~~~ll~~~---~~~~~~~hd~~~~~~~~~~~~~ 314 (693)
++.+++++|+++||++.. ...+|+|||++|++++.++...
T Consensus 429 ~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 429 EVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 344499999999999874 3457999999999999777543
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.5e-34 Score=318.47 Aligned_cols=268 Identities=17% Similarity=0.262 Sum_probs=214.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCE-EEEEEEeccCCchhh-------
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDV-VIWAAVIGFSDDKKW------- 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~------- 81 (693)
+..|||++++++|.++|... ++.++|+|+||||+||||||+++|++. +++.+|+. ++|+++.+.......
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34599999999999999863 347999999999999999999999875 56788986 999999543321110
Q ss_pred -----------------hhhchhHHHHHHHHHH---ccCcEEEEEeCcccccchhhh---hhhhhcccchhhhhhcCCc-
Q 042597 82 -----------------KEKSLQDKAADISSIL---SRKKFVLLLDDIWERIDLKEL---VSLFLTTRSVDVCDQMDAE- 137 (693)
Q Consensus 82 -----------------~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~---~~iliTtr~~~~~~~~~~~- 137 (693)
.....+.....+++.+ .++|+||||||||+..+|+.+ ++||||||++.++......
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~ 285 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHS
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCe
Confidence 0112234455566655 679999999999998888877 9999999999987644332
Q ss_pred eEEec------cCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCC-ChhHHHHHHHHHh
Q 042597 138 KLEVY------SLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQT-KVGDWQRAIKKMR 210 (693)
Q Consensus 138 ~~~l~------~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~-~~~~~~~~l~~l~ 210 (693)
.+.++ +|+.+||++||.+.+... ..++..+| |+|+||||+++|+.|+.+. +.++|+..
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 36666 899999999999985322 13344444 9999999999999999863 56778652
Q ss_pred hhhcccCCCcHHHHHHHHHhhcCCCchhh-hhHHhhhcccCCCCccChHHHHHHHHhcCccCCchhhHHHHHHHHHccce
Q 042597 211 ISASKFTGMDEKVFSRLKFSYDSLSTDEL-RSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCEFINDLLHACLL 289 (693)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~-k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~~l~~L~~~~ll 289 (693)
....+..++.+||+.|++ +. |.||+++|+||+++.|+.+.++..|+++| .+++..++++|+++||+
T Consensus 351 --------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----eedAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 351 --------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp --------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----SHHHHHHHHHHHTSSSS
T ss_pred --------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----HHHHHHHHHHHHhhCCE
Confidence 135889999999999999 77 99999999999999999999999999987 25688999999999999
Q ss_pred eec-CCCcEEechHHHHHH
Q 042597 290 EEE-GDDHVKMHDMIREML 307 (693)
Q Consensus 290 ~~~-~~~~~~~hd~~~~~~ 307 (693)
+.. +...|+|||++++++
T Consensus 418 q~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 418 EKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SBCSSSSEEBCCCHHHHHH
T ss_pred EEeCCCCEEEehHHHHHHh
Confidence 985 467899999998854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.9e-34 Score=344.97 Aligned_cols=293 Identities=18% Similarity=0.323 Sum_probs=236.9
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC-CCCEEEEEEEeccCCchh-------
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH-NFDVVIWAAVIGFSDDKK------- 80 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~------- 80 (693)
.+.||||++++++|.++|...+++.++|+|+||||+||||||+++|++.....+ .++.++|+++.+......
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 367999999999999999765577899999999999999999999998622244 557888999854321000
Q ss_pred ------------hhhhchhHHHHHHHHHHccC--cEEEEEeCcccccchhhh---hhhhhcccchhhhhhc-CCce-EEe
Q 042597 81 ------------WKEKSLQDKAADISSILSRK--KFVLLLDDIWERIDLKEL---VSLFLTTRSVDVCDQM-DAEK-LEV 141 (693)
Q Consensus 81 ------------~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~---~~iliTtr~~~~~~~~-~~~~-~~l 141 (693)
......++....++..+.++ |+||||||||+..++..+ ++||||||++.++... .... +.+
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~ 282 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPV 282 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEEC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEe
Confidence 11123456667777778776 999999999999888887 8999999999988543 3333 888
Q ss_pred cc-CCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhhhccc----
Q 042597 142 YS-LANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRISASKF---- 216 (693)
Q Consensus 142 ~~-l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~---- 216 (693)
.+ |+.+||+++|.+.++.. .+...+.+++|+++|+|+||||+++|++++.+. .+|..++..+.......
T Consensus 283 ~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~ 356 (1249)
T 3sfz_A 283 ESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKS 356 (1249)
T ss_dssp CSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCT
T ss_pred cCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccc
Confidence 85 99999999999887533 244567899999999999999999999999854 57999998887654221
Q ss_pred -CCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCCCCccChHHHHHHHHhcCccCCchhhHHHHHHHHHccceeecCCC
Q 042597 217 -TGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCEFINDLLHACLLEEEGDD 295 (693)
Q Consensus 217 -~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~~l~~L~~~~ll~~~~~~ 295 (693)
....+.+..++.+||+.|++ +.|.||++||+||+++.|+...++..|.+++ +.+..++++|+++||++....+
T Consensus 357 ~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 357 SSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp TCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTTSCEEEESS
T ss_pred cccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhccceEEecCC
Confidence 12224789999999999999 8999999999999999999999999997653 6788999999999999986444
Q ss_pred ---cEEechHHHHHHHHHHhh
Q 042597 296 ---HVKMHDMIREMLLWIACT 313 (693)
Q Consensus 296 ---~~~~hd~~~~~~~~~~~~ 313 (693)
+|+||+++|++++.....
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGG
T ss_pred CceEEEecHHHHHHHHhhhhH
Confidence 499999999999887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=302.95 Aligned_cols=289 Identities=19% Similarity=0.336 Sum_probs=229.6
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccc-cCCC-CEEEEEEEeccCCchh------
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQ-QHNF-DVVIWAAVIGFSDDKK------ 80 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~------ 80 (693)
.+.||||+.++++|.+++...+++.++|+|+|+||+||||||.+++++. +. +.+| +.++|+++........
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 4679999999999999998654668999999999999999999999876 44 5677 6899999854321100
Q ss_pred -------------hhhhchhHHHHHHHHHHcc--CcEEEEEeCcccccchhhh---hhhhhcccchhhhhhcCCceEEe-
Q 042597 81 -------------WKEKSLQDKAADISSILSR--KKFVLLLDDIWERIDLKEL---VSLFLTTRSVDVCDQMDAEKLEV- 141 (693)
Q Consensus 81 -------------~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~---~~iliTtr~~~~~~~~~~~~~~l- 141 (693)
......+.....++..+.+ +++|+||||+|+...+..+ ++||||||+..++.......+.+
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~ 281 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVP 281 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEE
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEee
Confidence 0112334556667777766 7899999999988777766 89999999999877655444555
Q ss_pred --ccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhhhcc----
Q 042597 142 --YSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRISASK---- 215 (693)
Q Consensus 142 --~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~~~~---- 215 (693)
.+|+.+|++++|.+.++... ....+.+.+|+++|+|+|+||+++|+.++... .+|..+++.+......
T Consensus 282 ~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~ 355 (591)
T 1z6t_A 282 VESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRK 355 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSC
T ss_pred cCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhh
Confidence 48999999999999876422 22246789999999999999999999998853 4799888887754321
Q ss_pred -cCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCCCCccChHHHHHHHHhcCccCCchhhHHHHHHHHHccceeecC-
Q 042597 216 -FTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCEFINDLLHACLLEEEG- 293 (693)
Q Consensus 216 -~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~~l~~L~~~~ll~~~~- 293 (693)
.......+..++..||+.|++ +.|.||+++|+||+++.|+...+...|..++ ..+..++++|+++||+....
T Consensus 356 ~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----~~~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 356 SSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET-----EEVEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTTSSEEEEE
T ss_pred ccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH-----HHHHHHHHHHHhCcCeEEecC
Confidence 112235889999999999999 8999999999999999999999999996542 46788999999999998642
Q ss_pred --CCcEEechHHHHHHHHH
Q 042597 294 --DDHVKMHDMIREMLLWI 310 (693)
Q Consensus 294 --~~~~~~hd~~~~~~~~~ 310 (693)
...|+||+++++++...
T Consensus 430 ~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTEEEEECCHHHHHHHHHH
T ss_pred CCccEEEEcHHHHHHHHhh
Confidence 34799999999999876
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=3e-23 Score=215.60 Aligned_cols=280 Identities=19% Similarity=0.203 Sum_probs=149.6
Q ss_pred ccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEe
Q 042597 336 QEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLD 415 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 415 (693)
..+++++.+++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 3445555555555555555555555555555555555555444 455555555555555 444443 355555555555
Q ss_pred eCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccC-------cccccCcchhH
Q 042597 416 LSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEG-------NVLCDDAEPLM 488 (693)
Q Consensus 416 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------~~~~~~~~~~~ 488 (693)
+++|.++.+|. +.++++|++|++++|.....++. +..+++|++|++.+|......+... ..... .-..+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 192 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDI 192 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS-CCCCC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC-ccccc
Confidence 55555555543 55555555555555544444333 3455555555555554332100000 00000 00001
Q ss_pred HhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccccccccccCCccEEEEeccccccchhhh
Q 042597 489 KELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLV 567 (693)
Q Consensus 489 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~ 567 (693)
..+..+++|+.+++..+....... +.. ++|++|+++++.....+....+++|++|++++|.++.++.+.
T Consensus 193 ~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 262 (347)
T 4fmz_A 193 SPLASLTSLHYFTAYVNQITDITP----------VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVK 262 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGG----------GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGT
T ss_pred ccccCCCccceeecccCCCCCCch----------hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHh
Confidence 113444444444444332221111 122 567777777766555444667777777777777777777777
Q ss_pred hcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCc
Q 042597 568 FVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKL 647 (693)
Q Consensus 568 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~l 647 (693)
.+++|++|++++|.... + .....+++|+.|++.+|.-....+..+..+++|+.|++++|+ ++.+
T Consensus 263 ~l~~L~~L~l~~n~l~~-~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISD-I--------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C--------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred cCCCcCEEEccCCccCC-C--------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 77777777777774322 1 134567888888888774333333445678888888888875 5555
Q ss_pred CC
Q 042597 648 PL 649 (693)
Q Consensus 648 p~ 649 (693)
|.
T Consensus 327 ~~ 328 (347)
T 4fmz_A 327 RP 328 (347)
T ss_dssp GG
T ss_pred cC
Confidence 43
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.2e-22 Score=210.97 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=188.7
Q ss_pred ccCCcccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhcc
Q 042597 329 LTEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANL 408 (693)
Q Consensus 329 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l 408 (693)
...++....+++++.|++.+|.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++| .+..++. +..+
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n-~i~~~~~-~~~l 131 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNED-NISDISP-LANL 131 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTS-CCCCCGG-GTTC
T ss_pred cccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCC-cccCchh-hccC
Confidence 3444555666777777777777776666777777777777777666653 2667777777777777 5555553 6667
Q ss_pred ccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccC-------cccc
Q 042597 409 VSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEG-------NVLC 481 (693)
Q Consensus 409 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------~~~~ 481 (693)
++|++|++++|.....+..+.++++|++|++++| .+..++. +..+++|++|++++|......+... ....
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence 7777777777743333334666777777777666 4445444 4566667777666665443221000 0000
Q ss_pred cCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccccccccccCCccEEEEecccc
Q 042597 482 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKV 560 (693)
Q Consensus 482 ~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l 560 (693)
... .....+..+++|+.++++.+....... +.. ++|++|+++++..........+++|+.|++++|.+
T Consensus 209 n~l-~~~~~~~~~~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 209 NQI-TDITPVANMTRLNSLKIGNNKITDLSP----------LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp SCC-CCCGGGGGCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCC-CCCchhhcCCcCCEEEccCCccCCCcc----------hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc
Confidence 000 111126677788888887765433222 122 78999999988766666678899999999999999
Q ss_pred ccchhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEcc
Q 042597 561 KDLTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLH 640 (693)
Q Consensus 561 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 640 (693)
+.++.+..+++|+.|++++|......+ .....+++|+.|++.+|+ +..++. ...+++|+.|++++
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 278 SDISVLNNLSQLNSLFLNNNQLGNEDM-------------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCGGGH-------------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSC
T ss_pred CCChhhcCCCCCCEEECcCCcCCCcCh-------------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhh
Confidence 999989999999999999997544332 245678999999999985 666654 77899999999998
Q ss_pred CC
Q 042597 641 CP 642 (693)
Q Consensus 641 c~ 642 (693)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1e-22 Score=215.04 Aligned_cols=282 Identities=19% Similarity=0.193 Sum_probs=199.4
Q ss_pred ccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccE
Q 042597 336 QEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHH 413 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 413 (693)
..+.+++.+++.++.+..++. +..+++|++|++.+|.++.+++..|..+++|++|++++|......|..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 346889999999999998876 678999999999999999998878999999999999999433344566899999999
Q ss_pred EeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhc
Q 042597 414 LDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELL 492 (693)
Q Consensus 414 L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (693)
|++++|.++.+|.. +.++++|++|++++| .+..++...+..+++|++|++++|.+... .+.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~ 183 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------DLS 183 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------CGG
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc-----------------ccc
Confidence 99999999999887 488999999999999 66677665578999999999999876542 123
Q ss_pred cCCCCceeEEEeechhhHhhhhccchhhh------hh---cccccceeEeccccccccccccccCCccEEEEeccccccc
Q 042597 493 GLKHLNVLSWSFRSSLAVQKFFKYPKLEL------EL---ENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDL 563 (693)
Q Consensus 493 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~------~l---~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 563 (693)
.+++|+.++++.+..........+..+.. .+ ...+|+.|+++++..........+++|++|++++|.++.+
T Consensus 184 ~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc
Confidence 34444444444332211110000100000 00 0145666666666555555556677777777777766654
Q ss_pred --hhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccC
Q 042597 564 --TWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHC 641 (693)
Q Consensus 564 --~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 641 (693)
..+..+++|++|++++|.... ++ .....+++|+.|++.++ .+..++.....+++|+.|++++|
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~-~~-------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA-LN-------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE-EE-------------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred ChhHccccccCCEEECCCCcCcc-cC-------------cccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 345567777777777765322 21 23456889999999887 57777777778899999999886
Q ss_pred CCCCCcCCCC
Q 042597 642 PELKKLPLNS 651 (693)
Q Consensus 642 ~~L~~lp~~~ 651 (693)
+ ++.+|...
T Consensus 329 ~-i~~~~~~~ 337 (390)
T 3o6n_A 329 S-IVTLKLST 337 (390)
T ss_dssp C-CCCCCCCT
T ss_pred c-cceeCchh
Confidence 4 77776443
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=211.26 Aligned_cols=290 Identities=21% Similarity=0.227 Sum_probs=218.2
Q ss_pred eecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhh
Q 042597 323 VRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSK 400 (693)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 400 (693)
...+.....+|. ....+++.|++.+|.+..++ .+.++++|++|++++|.++.+.+..|..+++|++|+|++| .+..
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~ 94 (477)
T 2id5_A 17 LCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKL 94 (477)
T ss_dssp ECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCS
T ss_pred EeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCc
Confidence 334445555554 23468999999999999885 4899999999999999999998888999999999999999 6777
Q ss_pred chH-hhhccccccEEeeCCCCCCcc-ChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCc
Q 042597 401 LRS-GIANLVSLHHLDLSSTNITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGN 478 (693)
Q Consensus 401 ~p~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 478 (693)
+|. .|.++++|++|++++|.++.+ |..+.++++|++|++++| .+..++...+.++++|++|++.+|.+...
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------ 167 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI------ 167 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC------
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc------
Confidence 765 478999999999999999985 567899999999999999 56666555578999999999999976543
Q ss_pred ccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccccc--cccccCCccEEEE
Q 042597 479 VLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKKR--FRSGFRSLNTVRV 555 (693)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~~--~~~~~~~L~~L~l 555 (693)
....+.++++|+.+++..+....... ..+.. .+|+.|+++++...... ......+|++|++
T Consensus 168 --------~~~~l~~l~~L~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 168 --------PTEALSHLHGLIVLRLRHLNINAIRD--------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp --------CHHHHTTCTTCCEEEEESCCCCEECT--------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred --------ChhHhcccCCCcEEeCCCCcCcEeCh--------hhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 23346677788888877654322110 01122 67888888876544321 2223448999999
Q ss_pred eccccccch--hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccccc-ccCCCCCCC
Q 042597 556 NGCKVKDLT--WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSI-YPNPLPFPK 632 (693)
Q Consensus 556 ~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~ 632 (693)
++|.++.++ .+..+++|+.|+|++|... .++. .....+++|+.|++.++. +..+ +..+..+++
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~------------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEG------------SMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNY 297 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECT------------TSCTTCTTCCEEECCSSC-CSEECTTTBTTCTT
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCC-ccCh------------hhccccccCCEEECCCCc-cceECHHHhcCccc
Confidence 999888877 4677899999999998643 2221 245678889999998764 4444 455678899
Q ss_pred ccEEEEccCCCCCCcCCCCC
Q 042597 633 LKKIQVLHCPELKKLPLNSS 652 (693)
Q Consensus 633 L~~L~l~~c~~L~~lp~~~~ 652 (693)
|+.|++++| +++.+|....
T Consensus 298 L~~L~L~~N-~l~~~~~~~~ 316 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEESVF 316 (477)
T ss_dssp CCEEECCSS-CCSCCCGGGB
T ss_pred CCEEECCCC-cCceeCHhHc
Confidence 999999886 6777776543
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.9e-22 Score=220.33 Aligned_cols=282 Identities=19% Similarity=0.182 Sum_probs=199.2
Q ss_pred cccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEE
Q 042597 337 EWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHL 414 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 414 (693)
.+.+++.+++.++.+..++. +..+++|++|++++|.++.+++..|+.+++|++|+|++|......|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45788889999998888875 6788999999999999999888778999999999999994333444557899999999
Q ss_pred eeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhcc
Q 042597 415 DLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLG 493 (693)
Q Consensus 415 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (693)
++++|.++.+|.. ++++++|++|++++| .+..+++..++.+++|++|++++|.+... . +..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------~---~~~ 190 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV--------------D---LSL 190 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC--------------C---GGG
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc--------------C---hhh
Confidence 9999999998877 488999999999998 56666655578899999999998876542 1 223
Q ss_pred CCCCceeEEEeechhhHhhhhccchhhh------h---hcccccceeEeccccccccccccccCCccEEEEeccccccc-
Q 042597 494 LKHLNVLSWSFRSSLAVQKFFKYPKLEL------E---LENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDL- 563 (693)
Q Consensus 494 L~~L~~l~~~~~~~~~~~~~~~~~~l~~------~---l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~- 563 (693)
+++|+.++++.+....+.....+..+.. . ....+|+.|.++++.......+..+++|+.|++++|.++.+
T Consensus 191 l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp CTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE
T ss_pred hhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC
Confidence 3444444443332111110000100000 0 01146777777776665556667778888888888877654
Q ss_pred -hhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCC
Q 042597 564 -TWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCP 642 (693)
Q Consensus 564 -~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 642 (693)
..+..+++|+.|+|++|.... ++ .....+|+|+.|+++++ .+..+|.....+++|+.|++++|
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~-l~-------------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N- 334 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVA-LN-------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN- 334 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCE-EE-------------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-
T ss_pred HHHhcCccCCCEEECCCCCCCC-CC-------------cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-
Confidence 356667888888888775322 21 24456889999999887 56778777788999999999886
Q ss_pred CCCCcCCCCC
Q 042597 643 ELKKLPLNSS 652 (693)
Q Consensus 643 ~L~~lp~~~~ 652 (693)
.+..+|....
T Consensus 335 ~l~~~~~~~~ 344 (597)
T 3oja_B 335 SIVTLKLSTH 344 (597)
T ss_dssp CCCCCCCCTT
T ss_pred CCCCcChhhc
Confidence 4666764443
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.3e-21 Score=209.37 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=219.9
Q ss_pred eeecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccc-cccccccCCCCcccEEEccCCcch
Q 042597 322 LVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIE-EITDGFFQPMSSLRVLALGRNFFL 398 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~~~~~ 398 (693)
+...+.....+|. ..++++.|++.+|.+..+. .+.++++|++|++++|.+. .+++..|..+++|++|+|++|...
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 4444555666666 3478999999999998873 4889999999999999886 666777899999999999999444
Q ss_pred hhchHhhhccccccEEeeCCCCCCc-cChh--hhcCCCCcEeccCCccccccc-ccccccCCCccccccccccCCCcccc
Q 042597 399 SKLRSGIANLVSLHHLDLSSTNITG-LPQD--LKALEKLRYLNLDHAYKLSII-PHKLKSGFSKLEALRLLECGSGGVIE 474 (693)
Q Consensus 399 ~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~~-p~~~~~~l~~L~~L~l~~~~~~~~~~ 474 (693)
...|..++++++|++|++++|.+++ +|.. +.++++|++|++++|. +..+ |..++.++++|++|++++|.+....+
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 4558889999999999999999987 4544 8899999999999994 5554 65556899999999999998765432
Q ss_pred ccCcc---------------cccCcc-----hhHHhhccCCCCceeEEEeechhh--Hhhhhcc---chh---h------
Q 042597 475 EEGNV---------------LCDDAE-----PLMKELLGLKHLNVLSWSFRSSLA--VQKFFKY---PKL---E------ 520 (693)
Q Consensus 475 ~~~~~---------------~~~~~~-----~~~~~l~~L~~L~~l~~~~~~~~~--~~~~~~~---~~l---~------ 520 (693)
..... ...... .....+..+++|+.++++.+.... ...+... ..+ .
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 21100 000000 000112234566666666553211 1111000 000 0
Q ss_pred ------------------hhhcccccceeEeccccccc--cccccccCCccEEEEeccccccch--hhhhcCCccEEEEe
Q 042597 521 ------------------LELENTNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKDLT--WLVFVQNLKELEIS 578 (693)
Q Consensus 521 ------------------~~l~~~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~l~ 578 (693)
..+...+|+.|+++.+.... ...+..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 00111467778877765543 234567889999999999887754 56778999999999
Q ss_pred ccccchhhhcccccccccccccccCCcCCCcceeecccccccccc-ccCCCCCCCccEEEEccCCCCCCcCCCCCCCCCc
Q 042597 579 FCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSI-YPNPLPFPKLKKIQVLHCPELKKLPLNSSSPKER 657 (693)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~~~ 657 (693)
+|...+ ++. .....+++|+.|+++++. +..+ +..+..+++|+.|++++| +++.+|.........
T Consensus 332 ~N~l~~-~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 332 QNFLGS-IDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTS 396 (455)
T ss_dssp SSCCCE-ECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred CCccCC-cCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCHhHhccCCc
Confidence 986532 211 245678999999999874 5555 566788999999999885 788888765333233
Q ss_pred ceEE
Q 042597 658 RVVI 661 (693)
Q Consensus 658 l~~~ 661 (693)
+..+
T Consensus 397 L~~L 400 (455)
T 3v47_A 397 LQKI 400 (455)
T ss_dssp CCEE
T ss_pred ccEE
Confidence 3333
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=4.2e-22 Score=204.35 Aligned_cols=239 Identities=19% Similarity=0.245 Sum_probs=168.0
Q ss_pred CCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEec
Q 042597 359 TCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLN 438 (693)
Q Consensus 359 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 438 (693)
...+++.|++.+|.++.+|+. +..+++|++|+|++| .+..+|..++++++|++|++++|.++.+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 356788888888888877766 667889999999888 566888888889999999999998888888888889999999
Q ss_pred cCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccch
Q 042597 439 LDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPK 518 (693)
Q Consensus 439 l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 518 (693)
+++|.....+|..+ +. .. ..+.+.++++|+.++++.+....+
T Consensus 157 L~~n~~~~~~p~~~-~~------~~-----------------------~~~~~~~l~~L~~L~L~~n~l~~l-------- 198 (328)
T 4fcg_A 157 IRACPELTELPEPL-AS------TD-----------------------ASGEHQGLVNLQSLRLEWTGIRSL-------- 198 (328)
T ss_dssp EEEETTCCCCCSCS-EE------EC------------------------CCCEEESTTCCEEEEEEECCCCC--------
T ss_pred CCCCCCccccChhH-hh------cc-----------------------chhhhccCCCCCEEECcCCCcCcc--------
Confidence 98887777777652 22 00 001123344444444443321100
Q ss_pred hhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch-hhhhcCCccEEEEeccccchhhhcccccccccc
Q 042597 519 LELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT-WLVFVQNLKELEISFCHAVEDIIIVDKLRDISE 597 (693)
Q Consensus 519 l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 597 (693)
+..+..+++|++|++++|.++.++ .+..+++|++|++++|...+.++.
T Consensus 199 ----------------------p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--------- 247 (328)
T 4fcg_A 199 ----------------------PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP--------- 247 (328)
T ss_dssp ----------------------CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC---------
T ss_pred ----------------------hHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH---------
Confidence 011245677888888888777654 566788888888888876665432
Q ss_pred cccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCCCCCCcceEEechHHHHhhccc
Q 042597 598 IIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSSPKERRVVIEGRKEWWEELQW 673 (693)
Q Consensus 598 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~~~l~~~~~~~~~~~~l~~ 673 (693)
..+.+++|+.|++.+|...+.+|..+..+++|+.|++++|+.++.+|.....+ ..+..+.+.....+.+++
T Consensus 248 ----~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 248 ----IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp ----CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC---
T ss_pred ----HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhh
Confidence 45677888888888887788888778888888888888888888888776665 556666666555555544
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=4.6e-21 Score=207.25 Aligned_cols=278 Identities=18% Similarity=0.264 Sum_probs=134.6
Q ss_pred cCCcccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccc
Q 042597 330 TEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLV 409 (693)
Q Consensus 330 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~ 409 (693)
..++....+++++.|++.+|.+..++.+..+++|++|++.+|.+...++ +..+++|++|++++| .+..++. +.+++
T Consensus 59 ~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 59 KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKNLT 134 (466)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred ccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcCCC
Confidence 3344455566666677766666666556666666666666666666555 566666666666666 4554543 66666
Q ss_pred cccEEeeCCCCCCccCh--------------------hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCC
Q 042597 410 SLHHLDLSSTNITGLPQ--------------------DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGS 469 (693)
Q Consensus 410 ~L~~L~l~~~~i~~lp~--------------------~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 469 (693)
+|++|++++|.++.+|. .+.++++|++|++++| .+..++. +..+++|++|++.+|..
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQI 211 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCcc
Confidence 66666666666555442 1334444444444444 3333332 34444555555544443
Q ss_pred CccccccC-----cc-cccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccccc
Q 042597 470 GGVIEEEG-----NV-LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKKR 542 (693)
Q Consensus 470 ~~~~~~~~-----~~-~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~~ 542 (693)
....+... .. .....-..+..+..+++|+.++++.+....... +.. ++|+.|.++++.....+
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 212 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP----------LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----------GTTCTTCSEEECCSSCCCCCG
T ss_pred cccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh----------hhcCCCCCEEECCCCccCccc
Confidence 32211000 00 000000001122333333333333322111110 111 45555555555444333
Q ss_pred cccccCCccEEEEeccccccchhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccc
Q 042597 543 FRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKS 622 (693)
Q Consensus 543 ~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 622 (693)
....+++|+.|++++|.++.++.+..+++|+.|++++|...... ....+++|+.|++.+| .+..
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 282 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---------------PVSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG---------------GGGGCTTCCEEECCSS-CCCC
T ss_pred cccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch---------------hhccCccCCEeECCCC-ccCC
Confidence 34555666666666666655555556666666666666432211 1234455555555544 2333
Q ss_pred cccCCCCCCCccEEEEccC
Q 042597 623 IYPNPLPFPKLKKIQVLHC 641 (693)
Q Consensus 623 l~~~~~~~~~L~~L~l~~c 641 (693)
+ .....+++|+.|++++|
T Consensus 346 ~-~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 346 V-SSLANLTNINWLSAGHN 363 (466)
T ss_dssp C-GGGTTCTTCCEEECCSS
T ss_pred c-hhhccCCCCCEEeCCCC
Confidence 3 13344555555555544
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=3.8e-21 Score=215.58 Aligned_cols=148 Identities=24% Similarity=0.177 Sum_probs=124.4
Q ss_pred eeecCCCccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh
Q 042597 322 LVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS 399 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
+...+.....+|.. ..++++.|++.+|.+..++. +.++++|++|++++|.++.+++..|..+++|++|++++|....
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 44455556666653 33789999999999988864 8899999999999999999988889999999999999994434
Q ss_pred hchHhhhccccccEEeeCCCCCCccC-hhhhcCCCCcEeccCCccccc--ccccccccCCCccccccccccCCCcc
Q 042597 400 KLRSGIANLVSLHHLDLSSTNITGLP-QDLKALEKLRYLNLDHAYKLS--IIPHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 400 ~~p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~--~~p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
..|..|+++++|++|++++|.++.+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+...
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceec
Confidence 44888999999999999999999976 56999999999999999 454 46776 78999999999999987654
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.4e-21 Score=204.49 Aligned_cols=276 Identities=20% Similarity=0.184 Sum_probs=206.2
Q ss_pred ccCCcc--cccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh
Q 042597 329 LTEAPK--VQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG 404 (693)
Q Consensus 329 ~~~~~~--~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~ 404 (693)
...+|. ...+++++.|++.+|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++| .+..+|..
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~ 135 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRG 135 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHH
Confidence 334443 456789999999999998875 4889999999999999999999988999999999999999 77778766
Q ss_pred -hhccccccEEeeCCCCCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccc-------
Q 042597 405 -IANLVSLHHLDLSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEE------- 475 (693)
Q Consensus 405 -~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~------- 475 (693)
+.++++|++|++++|.++.+++ .+.++++|++|++++| .+..++ ++.+++|++|++.+|........
T Consensus 136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~ 211 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELD 211 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEE
T ss_pred HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccccccccCCCCcceEEE
Confidence 5899999999999999999754 5899999999999999 666665 46788888888887765432100
Q ss_pred -cCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccc--cccccccCCcc
Q 042597 476 -EGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVK--KRFRSGFRSLN 551 (693)
Q Consensus 476 -~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~ 551 (693)
..+.... . .....++|+.++++.+....... +.. ++|++|+++++.... ...+..+++|+
T Consensus 212 l~~n~l~~-~-----~~~~~~~L~~L~l~~n~l~~~~~----------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 212 ASHNSINV-V-----RGPVNVELTILKLQHNNLTDTAW----------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp CCSSCCCE-E-----ECCCCSSCCEEECCSSCCCCCGG----------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred CCCCeeee-c-----cccccccccEEECCCCCCcccHH----------HcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 0000000 0 00123456666666554332221 223 789999998886554 34557799999
Q ss_pred EEEEeccccccchh-hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCC
Q 042597 552 TVRVNGCKVKDLTW-LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPF 630 (693)
Q Consensus 552 ~L~l~~~~l~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 630 (693)
+|++++|.++.++. ...+++|++|++++|... .++. ....+++|+.|++.+++ +..++ ...+
T Consensus 276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-------------~~~~l~~L~~L~L~~N~-i~~~~--~~~~ 338 (390)
T 3o6n_A 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER-------------NQPQFDRLENLYLDHNS-IVTLK--LSTH 338 (390)
T ss_dssp EEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG-------------GHHHHTTCSEEECCSSC-CCCCC--CCTT
T ss_pred EEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCc-------------cccccCcCCEEECCCCc-cceeC--chhh
Confidence 99999998888764 456899999999999643 3322 34568999999999874 66664 6778
Q ss_pred CCccEEEEccCC
Q 042597 631 PKLKKIQVLHCP 642 (693)
Q Consensus 631 ~~L~~L~l~~c~ 642 (693)
++|+.|++++++
T Consensus 339 ~~L~~L~l~~N~ 350 (390)
T 3o6n_A 339 HTLKNLTLSHND 350 (390)
T ss_dssp CCCSEEECCSSC
T ss_pred ccCCEEEcCCCC
Confidence 999999998864
No 15
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=2.7e-21 Score=207.40 Aligned_cols=272 Identities=17% Similarity=0.184 Sum_probs=151.3
Q ss_pred cccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhcccccc
Q 042597 333 PKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLH 412 (693)
Q Consensus 333 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 412 (693)
.....+++++.|++.+|.+.+++.+..+++|++|++++|.++.++ ++.+++|++|++++| .+..+| ++++++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 344556677777777777777666777777777777777777653 567777777777777 455554 66777777
Q ss_pred EEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhc
Q 042597 413 HLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELL 492 (693)
Q Consensus 413 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (693)
+|++++|+++.+| ++++++|++|++++| .+..++ ++.+++|++|++.+|.....+ .+.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~----------------~~~ 167 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKL----------------DVT 167 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCC----------------CCT
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccccc----------------ccc
Confidence 7777777777765 677777777777777 455554 466777777777766433321 133
Q ss_pred cCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCC
Q 042597 493 GLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQN 571 (693)
Q Consensus 493 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~ 571 (693)
.+++|+.++++.+....+. +.. +.|+.|.++.+..... ....+++|+.|++++|.++.+| +..+++
T Consensus 168 ~l~~L~~L~ls~n~l~~l~-----------l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~ 234 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELD-----------VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-VTPLTQ 234 (457)
T ss_dssp TCTTCCEEECCSSCCCCCC-----------CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC-CTTCTT
T ss_pred cCCcCCEEECCCCccceec-----------cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC-ccccCC
Confidence 4455555555544322111 111 3445555544433222 2344555555555555555544 444555
Q ss_pred ccEEEEeccccchhhhccccccc------------------ccccccccCCcCCCcceeeccccccccccccCCCCCCCc
Q 042597 572 LKELEISFCHAVEDIIIVDKLRD------------------ISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKL 633 (693)
Q Consensus 572 L~~L~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L 633 (693)
|+.|++++|.... ++. ..... ...+...+.+.+++|+.|++++|+.++.++. .+++|
T Consensus 235 L~~L~l~~N~l~~-~~~-~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 235 LTYFDCSVNPLTE-LDV-STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp CSEEECCSSCCSC-CCC-TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred CCEEEeeCCcCCC-cCH-HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc---CCCcc
Confidence 5555555553221 110 00000 0001112345567788888877776666653 23444
Q ss_pred cEEEEccCCCCCCcCCC
Q 042597 634 KKIQVLHCPELKKLPLN 650 (693)
Q Consensus 634 ~~L~l~~c~~L~~lp~~ 650 (693)
+.|++++|++|+.+...
T Consensus 310 ~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLN 326 (457)
T ss_dssp SCCCCTTCTTCCEEECT
T ss_pred eEechhhcccCCEEECC
Confidence 44444444444444333
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=5.8e-21 Score=206.48 Aligned_cols=269 Identities=20% Similarity=0.253 Sum_probs=179.8
Q ss_pred ccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEe
Q 042597 336 QEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLD 415 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 415 (693)
..+++++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 3467899999999999999889999999999999999999877 899999999999999 6666665 99999999999
Q ss_pred eCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCC
Q 042597 416 LSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLK 495 (693)
Q Consensus 416 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 495 (693)
+++|.++.+|. +.++++|++|++++| .+..++. ++.+++|++|++..+ ... +..+.+++
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~-~~~----------------~~~~~~l~ 177 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQ-VTD----------------LKPLANLT 177 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEES-CCC----------------CGGGTTCT
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCc-ccC----------------chhhccCC
Confidence 99999999875 999999999999999 6777775 678889998888532 211 11245555
Q ss_pred CCceeEEEeechhhHhhhhccchhhh------------hhcc-cccceeEeccccccccccccccCCccEEEEecccccc
Q 042597 496 HLNVLSWSFRSSLAVQKFFKYPKLEL------------ELEN-TNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKD 562 (693)
Q Consensus 496 ~L~~l~~~~~~~~~~~~~~~~~~l~~------------~l~~-~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 562 (693)
+|+.++++.+.......+..++.+.. .+.. ++|++|.++++..........+++|+.|++++|.++.
T Consensus 178 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred CCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc
Confidence 66666655543222211111110000 0011 3444444444433333333444555555555554444
Q ss_pred chhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCC
Q 042597 563 LTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCP 642 (693)
Q Consensus 563 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 642 (693)
++.+..+++|+.|++++|.... + .....+++|+.|++.++ .+..++. ...+++|+.|++++|
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~-------------~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n- 319 (466)
T 1o6v_A 258 LAPLSGLTKLTELKLGANQISN-------------I--SPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN- 319 (466)
T ss_dssp CGGGTTCTTCSEEECCSSCCCC-------------C--GGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-
T ss_pred chhhhcCCCCCEEECCCCccCc-------------c--ccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-
Confidence 4444445555555555543211 1 12456788888888876 3555543 667889999999887
Q ss_pred CCCCc
Q 042597 643 ELKKL 647 (693)
Q Consensus 643 ~L~~l 647 (693)
++..+
T Consensus 320 ~l~~~ 324 (466)
T 1o6v_A 320 NISDI 324 (466)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 34443
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3.7e-21 Score=214.45 Aligned_cols=270 Identities=20% Similarity=0.181 Sum_probs=204.2
Q ss_pred cccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccc
Q 042597 335 VQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSL 411 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L 411 (693)
...+++++.|++.+|.+..++ .+..+++|++|++++|.++.+++..|+.+++|++|+|++| .+..+|.. |+++++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence 346789999999999998886 5889999999999999999999998999999999999999 67777765 5899999
Q ss_pred cEEeeCCCCCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccc--------cCccccc
Q 042597 412 HHLDLSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEE--------EGNVLCD 482 (693)
Q Consensus 412 ~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~~ 482 (693)
++|++++|.++.+++ .++++++|++|++++| .+..++ ++.+++|++|++.+|.+...... ..+...
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~- 224 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN- 224 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC-
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccc-
Confidence 999999999999655 5899999999999999 667766 45788888888888765432100 000000
Q ss_pred CcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEecccccccc--ccccccCCccEEEEeccc
Q 042597 483 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKK--RFRSGFRSLNTVRVNGCK 559 (693)
Q Consensus 483 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~--~~~~~~~~L~~L~l~~~~ 559 (693)
.... ...++|+.++++.+....... +.. ++|+.|+++++..... ..+..+++|+.|+|++|.
T Consensus 225 ---~~~~--~~~~~L~~L~L~~n~l~~~~~----------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 225 ---VVRG--PVNVELTILKLQHNNLTDTAW----------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp ---EEEC--SCCSCCCEEECCSSCCCCCGG----------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred ---cccc--ccCCCCCEEECCCCCCCCChh----------hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 0000 011356666665554322211 223 7899999998876543 456789999999999998
Q ss_pred cccchh-hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEE
Q 042597 560 VKDLTW-LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQV 638 (693)
Q Consensus 560 l~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 638 (693)
++.++. ...+++|+.|+|++|... .++. ....+++|+.|++.++. +..++ ...+++|+.|++
T Consensus 290 l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~-------------~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l 352 (597)
T 3oja_B 290 LVALNLYGQPIPTLKVLDLSHNHLL-HVER-------------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTL 352 (597)
T ss_dssp CCEEECSSSCCTTCCEEECCSSCCC-CCGG-------------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEEC
T ss_pred CCCCCcccccCCCCcEEECCCCCCC-ccCc-------------ccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEe
Confidence 888764 345899999999999754 3332 34678999999999874 55554 677999999999
Q ss_pred ccCC
Q 042597 639 LHCP 642 (693)
Q Consensus 639 ~~c~ 642 (693)
+++|
T Consensus 353 ~~N~ 356 (597)
T 3oja_B 353 SHND 356 (597)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9875
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=206.93 Aligned_cols=273 Identities=18% Similarity=0.165 Sum_probs=215.4
Q ss_pred ccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccc
Q 042597 334 KVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSL 411 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L 411 (693)
....+++++.|++.+|.+..+. .+.++++|++|++++|.++.+++..|..+++|++|+|++|......|..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 4556789999999999998874 48899999999999999999999889999999999999995545557789999999
Q ss_pred cEEeeCCCCCCcc-ChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHh
Q 042597 412 HHLDLSSTNITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKE 490 (693)
Q Consensus 412 ~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (693)
++|++++|.++.+ |..+.++++|+.|++++| .+..+|...+..+++|+.|++.+|.+... ....
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~--------------~~~~ 195 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAI--------------RDYS 195 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEE--------------CTTC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEe--------------Chhh
Confidence 9999999999986 556899999999999999 77888877688999999999999876543 1224
Q ss_pred hccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccc--cccccCCccEEEEeccccccch--hh
Q 042597 491 LLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKR--FRSGFRSLNTVRVNGCKVKDLT--WL 566 (693)
Q Consensus 491 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~--~l 566 (693)
+.++++|+.++++.+.... ..+. ..+...+|++|+++++.....+ .+..+++|+.|++++|.++.++ .+
T Consensus 196 ~~~l~~L~~L~l~~~~~~~-----~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLD-----TMTP--NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp SCSCTTCCEEEEECCTTCC-----EECT--TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cccCcccceeeCCCCcccc-----ccCc--ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 5677888888887654221 0100 0111258899999887655433 4577899999999999888765 36
Q ss_pred hhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccC-CCCCCCccEEEEccCC
Q 042597 567 VFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPN-PLPFPKLKKIQVLHCP 642 (693)
Q Consensus 567 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~ 642 (693)
..+++|+.|+|++|......+ .....+++|+.|++.++ .++.++.. +..+++|+.|+++++|
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEP-------------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECT-------------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccccCCEEECCCCccceECH-------------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 779999999999986433211 35667899999999887 57776654 4678999999998764
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.6e-20 Score=214.17 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=157.3
Q ss_pred ccccccccceeeeccccchh------------------hcc-CC--CCCccceeeccccccccccccccCCCCcccEEEc
Q 042597 334 KVQEWEGAKRVSLMDNRILR------------------LLE-IP--TCSRLITLLLYENWIEEITDGFFQPMSSLRVLAL 392 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 392 (693)
....+++++.|++.+|.+.+ +|. +. ++++|++|++++|.+.+..|..++.+++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46678899999999999988 764 55 8999999999999888777777999999999999
Q ss_pred cCCc-chh-hchHhhhccc-------cccEEeeCCCCCCccCh--hhhcCCCCcEeccCCcccccccccccccCCCcccc
Q 042597 393 GRNF-FLS-KLRSGIANLV-------SLHHLDLSSTNITGLPQ--DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEA 461 (693)
Q Consensus 393 ~~~~-~~~-~~p~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~ 461 (693)
++|. ... .+|..++++. +|++|++++|+++.+|. .++++++|++|++++| .+..+| . ++.+++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceE
Confidence 9995 333 6898888877 99999999999999998 8999999999999999 566899 4 799999999
Q ss_pred ccccccCCCccccccCcccccCcchhHHhhccCCC-CceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccc
Q 042597 462 LRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKH-LNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVK 540 (693)
Q Consensus 462 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~ 540 (693)
|++++|.+. . .+ ..+.++++ |+.++++.+....+.. ........+|+.|.++.+....
T Consensus 600 L~Ls~N~l~-~-----------lp---~~l~~l~~~L~~L~Ls~N~L~~lp~------~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 600 LKLDYNQIE-E-----------IP---EDFCAFTDQVEGLGFSHNKLKYIPN------IFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp EECCSSCCS-C-----------CC---TTSCEECTTCCEEECCSSCCCSCCS------CCCTTCSSCEEEEECCSSCTTT
T ss_pred EECcCCccc-c-----------ch---HHHhhccccCCEEECcCCCCCcCch------hhhccccCCCCEEECcCCcCCC
Confidence 999999865 3 22 22455555 6666666554321111 0000011235556555554322
Q ss_pred ccc-----cc--ccCCccEEEEeccccccchhh--hhcCCccEEEEeccc
Q 042597 541 KRF-----RS--GFRSLNTVRVNGCKVKDLTWL--VFVQNLKELEISFCH 581 (693)
Q Consensus 541 ~~~-----~~--~~~~L~~L~l~~~~l~~~~~l--~~l~~L~~L~l~~~~ 581 (693)
..+ .. .+++|+.|++++|.++.+|.. ..+++|+.|+|++|.
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 110 01 223556666666655554422 235556666665554
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1e-20 Score=212.06 Aligned_cols=226 Identities=11% Similarity=0.120 Sum_probs=162.1
Q ss_pred ccccccccceeeeccccchh------------------hcc-CC--CCCccceeeccccccccccccccCCCCcccEEEc
Q 042597 334 KVQEWEGAKRVSLMDNRILR------------------LLE-IP--TCSRLITLLLYENWIEEITDGFFQPMSSLRVLAL 392 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 392 (693)
....+++++.|++.+|.+.+ +|. +. ++++|++|++++|.+.+..|..++.+++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 35678899999999999988 774 66 8999999999999988877777999999999999
Q ss_pred cCCc-chh-hchHhhhcc------ccccEEeeCCCCCCccCh--hhhcCCCCcEeccCCcccccccccccccCCCccccc
Q 042597 393 GRNF-FLS-KLRSGIANL------VSLHHLDLSSTNITGLPQ--DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEAL 462 (693)
Q Consensus 393 ~~~~-~~~-~~p~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L 462 (693)
++|. ... .+|..++.+ ++|++|++++|+++.+|. .++++++|++|++++|.....+| . ++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence 9995 334 689989887 999999999999999998 89999999999999994444888 4 7899999999
Q ss_pred cccccCCCccccccCcccccCcchhHHhhccCCC-CceeEEEeechhhHhhhhccchhhhhhcccccceeEecccccccc
Q 042597 463 RLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKH-LNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKK 541 (693)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~ 541 (693)
++++|.+. . . ...+.++++ |+.++++.+....+..... .....+|+.|+++.+.....
T Consensus 359 ~L~~N~l~-~-----------l---p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~------~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 359 NLAYNQIT-E-----------I---PANFCGFTEQVENLSFAHNKLKYIPNIFD------AKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp ECCSSEEE-E-----------C---CTTSEEECTTCCEEECCSSCCSSCCSCCC------TTCSSCEEEEECCSSCTTTT
T ss_pred ECCCCccc-c-----------c---cHhhhhhcccCcEEEccCCcCcccchhhh------hcccCccCEEECcCCcCCCc
Confidence 99998754 2 1 123555666 7777766554322111000 00012566666665544321
Q ss_pred --cccc-------ccCCccEEEEeccccccchh--hhhcCCccEEEEecccc
Q 042597 542 --RFRS-------GFRSLNTVRVNGCKVKDLTW--LVFVQNLKELEISFCHA 582 (693)
Q Consensus 542 --~~~~-------~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~l~~~~~ 582 (693)
..+. .+++|+.|++++|.++.++. +..+++|++|++++|..
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 1112 34566666666666665543 22356666666666653
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.6e-20 Score=201.27 Aligned_cols=271 Identities=16% Similarity=0.165 Sum_probs=177.2
Q ss_pred CccCCcccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhc
Q 042597 328 KLTEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIAN 407 (693)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~ 407 (693)
.....+....+++++.|++.+|.+..++ +..+++|++|++++|.++.++ ++.+++|++|++++| .+..+| ++.
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~~ 125 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VSQ 125 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CTT
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CCC
Confidence 3444566777889999999999998885 889999999999999988874 788999999999999 666665 889
Q ss_pred cccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchh
Q 042597 408 LVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPL 487 (693)
Q Consensus 408 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 487 (693)
+++|++|++++|+++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+... +
T Consensus 126 l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~------------- 186 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D------------- 186 (457)
T ss_dssp CTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C-------------
T ss_pred CCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c-------------
Confidence 999999999999999985 8889999999999987777764 57889999999998876542 1
Q ss_pred HHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch---
Q 042597 488 MKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT--- 564 (693)
Q Consensus 488 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--- 564 (693)
+..+++|+.++++.+..... .+..+ ++|+.|+++.+.....+ ...+++|+.|++++|.++.++
T Consensus 187 ---l~~l~~L~~L~l~~N~l~~~-~l~~l---------~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 187 ---VSQNKLLNRLNCDTNNITKL-DLNQN---------IQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC-CCTTC---------TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred ---cccCCCCCEEECcCCcCCee-ccccC---------CCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHH
Confidence 33344444444443322111 01111 33444444443332221 333444444444444333322
Q ss_pred ----------------------------hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccc
Q 042597 565 ----------------------------WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILY 616 (693)
Q Consensus 565 ----------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 616 (693)
+.+.+++|+.|++++|..++.++.. ...+.......+++|+.|++.+
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~-----~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ-----AAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECT-----TCCCSCCCCTTCTTCCEEECTT
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccC-----CCcceEechhhcccCCEEECCC
Confidence 1233466666666666655544421 1112223455667788888776
Q ss_pred cccccccccCCCCCCCccEEEEccCCCCCCc
Q 042597 617 GRNLKSIYPNPLPFPKLKKIQVLHCPELKKL 647 (693)
Q Consensus 617 ~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~l 647 (693)
+ +++.++ +..+++|+.|+++++ +++.+
T Consensus 328 N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 328 T-ELTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp C-CCSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred C-cccccc--cccCCcCcEEECCCC-CCCCc
Confidence 5 455553 677899999998763 44433
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=7e-20 Score=203.78 Aligned_cols=146 Identities=25% Similarity=0.272 Sum_probs=109.4
Q ss_pred eeecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh
Q 042597 322 LVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS 399 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
+...+.....+|. ...++++.|++.+|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++| .+.
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~ 89 (570)
T 2z63_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 89 (570)
T ss_dssp EECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred EEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCC
Confidence 3444455555554 23467888888888887775 4788888888888888888888777888888888888888 444
Q ss_pred hc-hHhhhccccccEEeeCCCCCCccCh-hhhcCCCCcEeccCCcccccc--cccccccCCCccccccccccCCCc
Q 042597 400 KL-RSGIANLVSLHHLDLSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSI--IPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 400 ~~-p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
.+ |..|+++++|++|++++|+++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++.+|.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccce
Confidence 44 4678888888888888888888765 4788888888888888 4443 5665 6778888888888776544
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=5.8e-20 Score=205.93 Aligned_cols=149 Identities=19% Similarity=0.129 Sum_probs=119.6
Q ss_pred eeecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh
Q 042597 322 LVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS 399 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
+...+.....+|.. ..+.++.|++.+|.+..++ .+.++++|++|++++|.++.+.+..|..+++|++|++++|....
T Consensus 17 ~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 17 YNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred EECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 33445555555542 2357999999999998884 48899999999999999999988889999999999999995445
Q ss_pred hchHhhhccccccEEeeCCCCCCcc-ChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCcc
Q 042597 400 KLRSGIANLVSLHHLDLSSTNITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 400 ~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
..|..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++.+|.+...
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccccc
Confidence 5577899999999999999999997 566899999999999999 56655311145599999999998876653
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=9.2e-20 Score=201.77 Aligned_cols=146 Identities=23% Similarity=0.243 Sum_probs=123.3
Q ss_pred CCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH
Q 042597 326 GIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS 403 (693)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~ 403 (693)
+.....+|.. ..++++.|++.+|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|......|.
T Consensus 14 ~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 14 SRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 3345555542 2378999999999998874 489999999999999999999988899999999999999944344445
Q ss_pred hhhccccccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCcc
Q 042597 404 GIANLVSLHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 404 ~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
.++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...+.++++|++|++.+|.+...
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 59999999999999999986 4678999999999999999667888865578999999999999987664
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.6e-21 Score=196.26 Aligned_cols=250 Identities=14% Similarity=0.128 Sum_probs=158.6
Q ss_pred cccceeeeccccchh---hc-cCCCCCccceeeccc-cccccccccccCCCCcccEEEccCCcchhhchHhhhccccccE
Q 042597 339 EGAKRVSLMDNRILR---LL-EIPTCSRLITLLLYE-NWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHH 413 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 413 (693)
.+++.|++.++.+.+ ++ .+.++++|++|++++ |.+.+..+..|..+++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456777777777664 33 466777777777774 6666555555777777777777777443466777777777777
Q ss_pred EeeCCCCCCc-cChhhhcCCCCcEeccCCcccccccccccccCCC-ccccccccccCCCccccccCcccccCcchhHHhh
Q 042597 414 LDLSSTNITG-LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFS-KLEALRLLECGSGGVIEEEGNVLCDDAEPLMKEL 491 (693)
Q Consensus 414 L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 491 (693)
|++++|.++. +|..+.++++|++|++++|.....+|.. ++.++ +|++|++++|.+... .+.. +
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~-----------~~~~---~ 194 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK-----------IPPT---F 194 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE-----------CCGG---G
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc-----------CChH---H
Confidence 7777777773 6777777777777777777433366665 45666 777777777654432 1122 2
Q ss_pred ccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccc--cccccccCCccEEEEecccccc-chhhhh
Q 042597 492 LGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKD-LTWLVF 568 (693)
Q Consensus 492 ~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~-~~~l~~ 568 (693)
..++ |+.++++.+ .... ...+..+++|+.|++++|.++. ++.+..
T Consensus 195 ~~l~-L~~L~Ls~N-------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 242 (313)
T 1ogq_A 195 ANLN-LAFVDLSRN-------------------------------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242 (313)
T ss_dssp GGCC-CSEEECCSS-------------------------------EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC
T ss_pred hCCc-ccEEECcCC-------------------------------cccCcCCHHHhcCCCCCEEECCCCceeeecCcccc
Confidence 2222 444444332 2211 1233567788888888887764 445566
Q ss_pred cCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcC
Q 042597 569 VQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLP 648 (693)
Q Consensus 569 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp 648 (693)
+++|++|++++|.....++ .....+++|+.|++.++.-...+|.. ..+++|+.|++.+++.+...|
T Consensus 243 l~~L~~L~Ls~N~l~~~~p-------------~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLP-------------QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CTTCCEEECCSSCCEECCC-------------GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCCCCEEECcCCcccCcCC-------------hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 7888888888876544333 24556778888888776433355543 677888888888777665544
Q ss_pred C
Q 042597 649 L 649 (693)
Q Consensus 649 ~ 649 (693)
.
T Consensus 309 ~ 309 (313)
T 1ogq_A 309 L 309 (313)
T ss_dssp S
T ss_pred C
Confidence 3
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=3.7e-20 Score=199.85 Aligned_cols=275 Identities=19% Similarity=0.193 Sum_probs=198.9
Q ss_pred ccccccccceeeeccccch-hhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh--hhcc
Q 042597 334 KVQEWEGAKRVSLMDNRIL-RLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG--IANL 408 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~-~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~--~~~l 408 (693)
....+++++.|++.+|.+. .++ .+..+++|++|++++|.++...+..|..+++|++|++++|......|.. +..+
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence 3556789999999999876 343 4889999999999999999998888999999999999999544445655 8899
Q ss_pred ccccEEeeCCCCCCcc-Chh-hhcCCCCcEeccCCcccccccccccccCC------------------------------
Q 042597 409 VSLHHLDLSSTNITGL-PQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGF------------------------------ 456 (693)
Q Consensus 409 ~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l------------------------------ 456 (693)
++|++|++++|.++.+ |.. +.++++|++|++++| .+..++...+..+
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 9999999999999986 555 889999999999999 4444433223333
Q ss_pred ----CccccccccccCCCccccccCcccccCcchhHHhhcc------------------------------------CCC
Q 042597 457 ----SKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLG------------------------------------LKH 496 (693)
Q Consensus 457 ----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------L~~ 496 (693)
++|++|++++|.+.... +..+..... .++
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~-----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESM-----------AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHH-----------HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred ccccceeeeEecCCCcccccc-----------hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 56667777666554321 111211111 134
Q ss_pred CceeEEEeechhhHhhhhccchhhhhhcc-cccceeEecccccccc--ccccccCCccEEEEeccccccch--hhhhcCC
Q 042597 497 LNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKK--RFRSGFRSLNTVRVNGCKVKDLT--WLVFVQN 571 (693)
Q Consensus 497 L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~ 571 (693)
|+.++++.+..... ....+.. ++|+.|+++++..... ..+..+++|++|++++|.++.++ .+..+++
T Consensus 277 L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 277 VKTCDLSKSKIFAL--------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp CCEEECCSSCCCEE--------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ceEEEecCcccccc--------chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 44555443322110 0111233 7899999988866543 35677999999999999888763 5677999
Q ss_pred ccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccC-CCCCCCccEEEEccCC
Q 042597 572 LKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPN-PLPFPKLKKIQVLHCP 642 (693)
Q Consensus 572 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~ 642 (693)
|++|+|++|......+ .....+++|+.|++.++ .++.++.. ...+++|+.|++++++
T Consensus 349 L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 349 LEVLDLSYNHIRALGD-------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEEECCSSCCCEECT-------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcccccCh-------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 9999999997533222 35677899999999986 57777764 4789999999999875
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=3.3e-20 Score=212.93 Aligned_cols=286 Identities=17% Similarity=0.133 Sum_probs=172.4
Q ss_pred cccceeeeccccchhh-c-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEee
Q 042597 339 EGAKRVSLMDNRILRL-L-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDL 416 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 416 (693)
++++.|.+.+|.+.+. + .+..+++|++|++++|.+++..+..+..+++|++|++++|.....+|..+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 4566666666655532 2 3556666666666666666555555666666666666666444456666666666666666
Q ss_pred CCCCCCc-cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCC
Q 042597 417 SSTNITG-LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLK 495 (693)
Q Consensus 417 ~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 495 (693)
++|++++ +|..++++++|++|++++|.....+|.+ ++.+++|++|++.+|.+... .+. .+.+++
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-----------~p~---~l~~l~ 538 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGN-----------IPA---ELGDCR 538 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEE-----------CCG---GGGGCT
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCc-----------CCH---HHcCCC
Confidence 6666664 5666666666666666666444455554 46666666666666655433 222 344455
Q ss_pred CCceeEEEeechh-hH-hhhhccchhh-hhhcc------------------------------------cccceeEeccc
Q 042597 496 HLNVLSWSFRSSL-AV-QKFFKYPKLE-LELEN------------------------------------TNLEEMKIDST 536 (693)
Q Consensus 496 ~L~~l~~~~~~~~-~~-~~~~~~~~l~-~~l~~------------------------------------~~L~~L~i~~~ 536 (693)
+|+.++++.+... .+ ..+.....+. ..+.. ..+..+.+...
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 5555555443211 00 0000000000 00000 00000111110
Q ss_pred cc--cccccccccCCccEEEEecccccc--chhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCccee
Q 042597 537 EE--VKKRFRSGFRSLNTVRVNGCKVKD--LTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYL 612 (693)
Q Consensus 537 ~~--~~~~~~~~~~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 612 (693)
.. ..+..+..+++|+.|++++|+++. +..++.+++|+.|+|++|.....+|. ..+.+++|+.|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-------------~l~~L~~L~~L 685 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-------------EVGDLRGLNIL 685 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-------------GGGGCTTCCEE
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-------------HHhCCCCCCEE
Confidence 00 012234567899999999998874 34688899999999999987666553 66788999999
Q ss_pred eccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCC
Q 042597 613 RILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSS 652 (693)
Q Consensus 613 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~ 652 (693)
+++++.--..+|..+..+++|+.|++++|+--..+|.+..
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 9999865568888889999999999999865567776644
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=2.1e-20 Score=191.73 Aligned_cols=217 Identities=22% Similarity=0.280 Sum_probs=160.1
Q ss_pred cccceeeeccccchhhcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 339 EGAKRVSLMDNRILRLLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
.+++.|++.++.+..++. +..+++|++|++++|.++.+|.. ++.+++|++|+|++| .+..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 678999999999998875 77899999999999999976654 899999999999999 667999999999999999999
Q ss_pred CCCC-CccChhhhc---------CCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchh
Q 042597 418 STNI-TGLPQDLKA---------LEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPL 487 (693)
Q Consensus 418 ~~~i-~~lp~~~~~---------l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 487 (693)
+|++ ..+|..++. +++|++|++++| .+..+|.. ++++++|++|++++|.+... +.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~l~~l------------~~- 223 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSAL------------GP- 223 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSCCCCC------------CG-
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCCCCcC------------ch-
Confidence 9754 458877654 888888888888 56677776 67788888888877754321 00
Q ss_pred HHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEecccccc-c-hh
Q 042597 488 MKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKD-L-TW 565 (693)
Q Consensus 488 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~-~~ 565 (693)
.+ ..+++|+.|++++|.+.. + ..
T Consensus 224 --~l-----------------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 224 --AI-----------------------------------------------------HHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp --GG-----------------------------------------------------GGCTTCCEEECTTCTTCCBCCCC
T ss_pred --hh-----------------------------------------------------ccCCCCCEEECcCCcchhhhHHH
Confidence 11 234556666666653332 2 24
Q ss_pred hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEcc
Q 042597 566 LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLH 640 (693)
Q Consensus 566 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 640 (693)
+..+++|++|+|++|...+.++. ....+++|+.|++.+|+.++.+|..+..+++|+.+.+..
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~-------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPL-------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCT-------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hcCCCCCCEEECCCCCchhhcch-------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 55567777777777665554432 345667777777777777777777777777777776653
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=8.9e-20 Score=187.78 Aligned_cols=264 Identities=18% Similarity=0.192 Sum_probs=173.4
Q ss_pred ccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 338 WEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
..+++.+.+.++.+..+|.. -.+++++|++++|.++.+++..|..+++|++|++++|......|..+.++++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 34678888888888777642 23689999999999999988778999999999999994333447889999999999999
Q ss_pred CCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCC
Q 042597 418 STNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHL 497 (693)
Q Consensus 418 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 497 (693)
+|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++.+|..... ......+.++++|
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~~l~~L 173 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS------------GIENGAFQGMKKL 173 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG------------GBCTTGGGGCTTC
T ss_pred CCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc------------CcChhhccCCCCc
Confidence 999999887665 79999999998 66777766678899999999998876431 1122345667777
Q ss_pred ceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccc--cccccccCCccEEEEeccccccch--hhhhcCCcc
Q 042597 498 NVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKDLT--WLVFVQNLK 573 (693)
Q Consensus 498 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~ 573 (693)
+.++++.+....+.. .+ .++|++|+++++.... ...+..+++|++|++++|.++.++ .+..+++|+
T Consensus 174 ~~L~l~~n~l~~l~~---------~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 174 SYIRIADTNITTIPQ---------GL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp CEEECCSSCCCSCCS---------SC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred CEEECCCCccccCCc---------cc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 777776543221110 00 1456666665554332 223455666666666666655543 355566666
Q ss_pred EEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCC-------CCCCCccEEEEccCC
Q 042597 574 ELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNP-------LPFPKLKKIQVLHCP 642 (693)
Q Consensus 574 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-------~~~~~L~~L~l~~c~ 642 (693)
+|++++|... .++ .....+++|+.|++.++ .++.++... ...++|+.|++.+.|
T Consensus 244 ~L~L~~N~l~-~lp-------------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 244 ELHLNNNKLV-KVP-------------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp EEECCSSCCS-SCC-------------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred EEECCCCcCc-cCC-------------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 6666666432 222 13345566666666654 344443211 123566666666554
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=5.5e-20 Score=211.07 Aligned_cols=299 Identities=20% Similarity=0.205 Sum_probs=162.6
Q ss_pred cccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEee
Q 042597 337 EWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDL 416 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 416 (693)
.+++++.|++.+|.+.....+..+++|++|++++|.++...+. ++.+++|++|++++|.....+|..++++++|++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 4456666666666666555556677777777777777665555 677777777777777444466667777777777777
Q ss_pred CCCCCCc-cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccC-------------ccccc
Q 042597 417 SSTNITG-LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEG-------------NVLCD 482 (693)
Q Consensus 417 ~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~ 482 (693)
++|.++. +|. . .+++|++|++++|.....+|..+...+++|++|++++|.+...++... +...+
T Consensus 255 s~n~l~~~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCc-c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 7776665 332 2 566666666666644335665532334666666666665443321100 00000
Q ss_pred CcchhHHhhccCCCCceeEEEeechh-----hHhhhh-ccchhhh-----------hhc---ccccceeEeccccccc--
Q 042597 483 DAEPLMKELLGLKHLNVLSWSFRSSL-----AVQKFF-KYPKLEL-----------ELE---NTNLEEMKIDSTEEVK-- 540 (693)
Q Consensus 483 ~~~~~~~~l~~L~~L~~l~~~~~~~~-----~~~~~~-~~~~l~~-----------~l~---~~~L~~L~i~~~~~~~-- 540 (693)
..+ ...+.++++|+.++++.+... .+.... .+..+.. .+. .++|+.|.+..+....
T Consensus 333 ~ip--~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 333 ELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp ECC--HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred cCC--HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 011 112444555555555443211 000000 0100000 000 1234444444443321
Q ss_pred cccccccCCccEEEEecccccc--chhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccc
Q 042597 541 KRFRSGFRSLNTVRVNGCKVKD--LTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGR 618 (693)
Q Consensus 541 ~~~~~~~~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 618 (693)
+..+..+++|+.|++++|.++. +..+..+++|+.|++++|.....++ .....+++|+.|++.++.
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-------------~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-------------QELMYVKTLETLILDFND 477 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-------------GGGGGCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-------------HHHcCCCCceEEEecCCc
Confidence 1223445555555555554442 2234455555555555554333222 245567889999998875
Q ss_pred cccccccCCCCCCCccEEEEccCCCCCCcCCCCCC
Q 042597 619 NLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSS 653 (693)
Q Consensus 619 ~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~ 653 (693)
-...+|..+..+++|+.|++++|.--..+|.....
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 54567777888999999999888655577765443
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=191.11 Aligned_cols=250 Identities=22% Similarity=0.263 Sum_probs=157.7
Q ss_pred cccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccccEEe
Q 042597 339 EGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~ 415 (693)
++++.|++.+|.+..++. +.++++|++|++++|.++.+++..|..+++|++|++++| .+..+|.. +.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 467777777777766653 667777777777777777776666777777777777777 45555544 66777777777
Q ss_pred eCCCCCCccCh--hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhcc
Q 042597 416 LSSTNITGLPQ--DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLG 493 (693)
Q Consensus 416 l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (693)
+++|+++.+|. .+.++++|++|++++|..+..++...+.++++|++|++.+|.+... ....+.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~l~~ 196 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--------------EPKSLKS 196 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--------------CTTTTTT
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--------------CHHHHhc
Confidence 77777777665 4667777777777776545555544456777777777777654432 1223444
Q ss_pred CCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch-----hhhh
Q 042597 494 LKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT-----WLVF 568 (693)
Q Consensus 494 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-----~l~~ 568 (693)
+++|+.++++.+...... ......+++|+.|++++|.++..+ ....
T Consensus 197 l~~L~~L~l~~n~l~~~~-----------------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLL-----------------------------EIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp CSEEEEEEEECSCSTTHH-----------------------------HHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred cccCCeecCCCCccccch-----------------------------hhhhhhcccccEEECCCCccccccccccccccc
Confidence 555555555544321111 011234677888888888666543 2334
Q ss_pred cCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCC-CCCCCccEEEEccCC
Q 042597 569 VQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNP-LPFPKLKKIQVLHCP 642 (693)
Q Consensus 569 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~ 642 (693)
.+.++.++++++.....-.. .+. .....+++|+.|+++++ +++.++... ..+++|+.|++++++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~--------~l~-~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLF--------QVM-KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHH--------HHH-HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchh--------hhH-HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 56788888887754332110 000 13456788889988876 577777664 678889999888874
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.2e-19 Score=203.30 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=100.2
Q ss_pred ccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-Hhhhcccc
Q 042597 334 KVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVS 410 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~ 410 (693)
....+++++.|++.+|.+..++ .+.++++|++|++++|.++.+++..|+.+++|++|++++| .+..++ ..++++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCC
Confidence 3556788888999988888774 3788889999999988888887777888899999999888 554444 66888888
Q ss_pred ccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCccc----cccccccCC
Q 042597 411 LHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLE----ALRLLECGS 469 (693)
Q Consensus 411 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~----~L~l~~~~~ 469 (693)
|++|++++|.++. +|..++++++|++|++++| .+..++...++.+.+|+ +|++.+|.+
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCCCc
Confidence 9999998888875 7888888888888888888 44554433244444443 455555543
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=207.89 Aligned_cols=300 Identities=17% Similarity=0.184 Sum_probs=208.3
Q ss_pred eeeecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeecccc-ccccccccccCCCCcccEEEccCCcc
Q 042597 321 FLVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYEN-WIEEITDGFFQPMSSLRVLALGRNFF 397 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~ 397 (693)
.....+.....+|. ..++++.|++++|.+..+. .+.++++|++|++++| .+..+++..|..+++|++|+|++|..
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 44455566777776 5689999999999998874 5899999999999999 45567677799999999999999954
Q ss_pred hhhchHhhhccccccEEeeCCCCCCc-cChh--hhcCCCCcEeccCCccccccc-ccccccCCCccccccccccCCCccc
Q 042597 398 LSKLRSGIANLVSLHHLDLSSTNITG-LPQD--LKALEKLRYLNLDHAYKLSII-PHKLKSGFSKLEALRLLECGSGGVI 473 (693)
Q Consensus 398 ~~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~l~~~-p~~~~~~l~~L~~L~l~~~~~~~~~ 473 (693)
....|..|+++++|++|++++|.+++ +|.. ++++++|++|++++|. +..+ +...++++++|++|++++|.+....
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 44558899999999999999999987 5655 8999999999999994 4444 3334789999999999999776542
Q ss_pred cccCcccccCcchhHHhh--ccCC---------------------------CCceeEEEeechh--hHhhhhcc---ch-
Q 042597 474 EEEGNVLCDDAEPLMKEL--LGLK---------------------------HLNVLSWSFRSSL--AVQKFFKY---PK- 518 (693)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l--~~L~---------------------------~L~~l~~~~~~~~--~~~~~~~~---~~- 518 (693)
+ ..+..+ .+|+ .|+.++++.+... ....+... ..
T Consensus 165 ~-----------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 165 E-----------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp S-----------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred H-----------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 1 222222 1111 2444444433210 00000000 00
Q ss_pred --h-----------------------hhhhcccccceeEeccccccc--cccccccCCccEEEEeccccccch--hhhhc
Q 042597 519 --L-----------------------ELELENTNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKDLT--WLVFV 569 (693)
Q Consensus 519 --l-----------------------~~~l~~~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l 569 (693)
+ ...+...+|+.|+++.+.... ...+..+++|+.|++++|.++.++ .+..+
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 0 000112467777777665433 234567888999999998777653 46678
Q ss_pred CCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccccccc-CCCCCCCccEEEEccCCCCCCcC
Q 042597 570 QNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYP-NPLPFPKLKKIQVLHCPELKKLP 648 (693)
Q Consensus 570 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~L~~lp 648 (693)
++|++|+|++|.... +.. .....+++|+.|++.++ .+..++. .+..+++|+.|++++| .++.+|
T Consensus 314 ~~L~~L~Ls~N~l~~-~~~------------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~ 378 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGE-LYS------------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH 378 (844)
T ss_dssp SSCCEEEEESCCCSC-CCS------------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCS
T ss_pred CCCCEEECCCCCCCc-cCH------------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCccc
Confidence 899999998886432 211 35667889999999886 4666654 3667899999999886 566655
Q ss_pred C
Q 042597 649 L 649 (693)
Q Consensus 649 ~ 649 (693)
.
T Consensus 379 ~ 379 (844)
T 3j0a_A 379 F 379 (844)
T ss_dssp S
T ss_pred C
Confidence 4
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=200.24 Aligned_cols=135 Identities=24% Similarity=0.260 Sum_probs=105.8
Q ss_pred ccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhcccc
Q 042597 334 KVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVS 410 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~ 410 (693)
....+++++.|++.+|.+..++. +.++++|++|++++|.++.+++..|..+++|++|++++| .+..+|. .++++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 44567889999999998888753 788999999999999998888888889999999999998 6666654 5888999
Q ss_pred ccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCcc----ccccccccCCC
Q 042597 411 LHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKL----EALRLLECGSG 470 (693)
Q Consensus 411 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L----~~L~l~~~~~~ 470 (693)
|++|++++|.++. +|..++++++|++|++++| .+..++...++.+.+| +.|++.+|...
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCce
Confidence 9999999998886 6888899999999999888 5555544335556666 55666665543
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=196.27 Aligned_cols=137 Identities=23% Similarity=0.304 Sum_probs=114.7
Q ss_pred cCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch
Q 042597 325 AGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR 402 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p 402 (693)
.+.....+|.... ++++.|++++|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|+|++| .+..+|
T Consensus 8 s~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp 85 (520)
T 2z7x_B 8 SKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKIS 85 (520)
T ss_dssp TTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEE
T ss_pred CCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecC
Confidence 3334445554222 79999999999998875 4889999999999999999998888999999999999999 777888
Q ss_pred HhhhccccccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCcc--ccccccccCC
Q 042597 403 SGIANLVSLHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKL--EALRLLECGS 469 (693)
Q Consensus 403 ~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L--~~L~l~~~~~ 469 (693)
.. .+++|++|++++|.++. +|..++++++|++|++++| .+.... +..+++| ++|++.+|..
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSS---VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGGG---GGGGTTSCEEEEEEEECTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccchhh---ccccccceeeEEEeecccc
Confidence 66 89999999999999987 5788999999999999998 444422 5678888 9999998876
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=3.1e-19 Score=197.79 Aligned_cols=320 Identities=20% Similarity=0.177 Sum_probs=204.1
Q ss_pred eeeecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcch
Q 042597 321 FLVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFL 398 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~ 398 (693)
.+...+.....+|.. ..++++.|++.+|.+..++ .+..+++|++|++++|.++.++++.|..+++|++|++++| .+
T Consensus 35 ~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 112 (562)
T 3a79_B 35 MVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RL 112 (562)
T ss_dssp EEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cC
Confidence 344445555556642 2379999999999999886 5899999999999999999998888999999999999999 67
Q ss_pred hhchHhhhccccccEEeeCCCCCCccC--hhhhcCCCCcEeccCCcccccccccccccCCCcc--ccccccccCC--Ccc
Q 042597 399 SKLRSGIANLVSLHHLDLSSTNITGLP--QDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKL--EALRLLECGS--GGV 472 (693)
Q Consensus 399 ~~~p~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L--~~L~l~~~~~--~~~ 472 (693)
..+|.. .+++|++|++++|+++.+| ..++++++|++|++++| .+...+ +..+++| ++|++.+|.. ...
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeeccccccccc
Confidence 788866 8999999999999999864 78999999999999998 454432 4556666 9999998876 322
Q ss_pred cccc-Cc-------------cccc--------------------------CcchhHHhhccCCC----------------
Q 042597 473 IEEE-GN-------------VLCD--------------------------DAEPLMKELLGLKH---------------- 496 (693)
Q Consensus 473 ~~~~-~~-------------~~~~--------------------------~~~~~~~~l~~L~~---------------- 496 (693)
.+.. .+ ...+ .....+..+.+++.
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 1110 00 0000 00111112222222
Q ss_pred -----------CceeEEEeechh-hHh-hh-----hccchhh-----------------h--------------------
Q 042597 497 -----------LNVLSWSFRSSL-AVQ-KF-----FKYPKLE-----------------L-------------------- 521 (693)
Q Consensus 497 -----------L~~l~~~~~~~~-~~~-~~-----~~~~~l~-----------------~-------------------- 521 (693)
|+.++++.+... .+. .+ ..+..+. .
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 222222222110 000 00 0000000 0
Q ss_pred hh-cc-cccceeEeccccccc--cccccccCCccEEEEeccccccchh----hhhcCCccEEEEeccccchhhhcc--cc
Q 042597 522 EL-EN-TNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKDLTW----LVFVQNLKELEISFCHAVEDIIIV--DK 591 (693)
Q Consensus 522 ~l-~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~--~~ 591 (693)
.. .. ++|++|+++++.... +.....+++|+.|++++|.++.++. +..+++|++|++++|.....++.. ..
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 00 12 556666666654433 2344667788888888887776542 456788888888887654433321 00
Q ss_pred ccccccc-------ccccCCcC-CCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCC
Q 042597 592 LRDISEI-------IGLEHNFF-AQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLN 650 (693)
Q Consensus 592 ~~~~~~~-------~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~ 650 (693)
...+..+ .......+ ++|+.|+++++ +++.+|.....+++|+.|++++| +++.+|..
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 1111100 00112233 68999999887 68888888889999999999885 78889877
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.3e-19 Score=186.69 Aligned_cols=126 Identities=18% Similarity=0.210 Sum_probs=73.8
Q ss_pred ccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCC
Q 042597 340 GAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSST 419 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 419 (693)
+++.+.+.++.+..+|... .++|++|++++|.++.+++..|..+++|++|++++|......|..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4555666666555554311 246666666666666665555666666666666666322233555666666666666666
Q ss_pred CCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCC
Q 042597 420 NITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGS 469 (693)
Q Consensus 420 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 469 (693)
.++.+|..+. ++|++|++++| .+..+|...+.++++|++|++.+|..
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcc
Confidence 6666665544 56666666666 45555554455666666666666654
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=3.1e-19 Score=203.57 Aligned_cols=286 Identities=16% Similarity=0.154 Sum_probs=151.6
Q ss_pred cccccceeeeccccchh-hc-cCCCCCccceeeccccc-ccc--ccccccC-------CCCcccEEEccCCcchhhchH-
Q 042597 337 EWEGAKRVSLMDNRILR-LL-EIPTCSRLITLLLYENW-IEE--ITDGFFQ-------PMSSLRVLALGRNFFLSKLRS- 403 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~-l~~--~~~~~~~-------~l~~L~~L~L~~~~~~~~~p~- 403 (693)
.+++++.|++.+|.+.. +| .+.++++|+.|++++|. +++ +|.. ++ .+++|++|+|++| .+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCccCCh
Confidence 34555556665554332 22 24555555566555554 443 2221 22 2335555555555 3335555
Q ss_pred -hhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCc-cccccccccCCCccccccC----
Q 042597 404 -GIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSK-LEALRLLECGSGGVIEEEG---- 477 (693)
Q Consensus 404 -~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~---- 477 (693)
.++++++|++|++++|+++.+| .++++++|+.|++++| .+..+|.. +.++++ |++|++++|.+. .++...
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 5555555555555555555555 5555555555555555 33355544 345555 555555555443 211100
Q ss_pred -----------cccccCcchhHHhhc--cCCCCceeEEEeechhhHhhhhccchhhhhh-cc-cccceeEeccccccccc
Q 042597 478 -----------NVLCDDAEPLMKELL--GLKHLNVLSWSFRSSLAVQKFFKYPKLELEL-EN-TNLEEMKIDSTEEVKKR 542 (693)
Q Consensus 478 -----------~~~~~~~~~~~~~l~--~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l-~~-~~L~~L~i~~~~~~~~~ 542 (693)
|...+..+.....+. .+.+|+.++++.+....+. ..+ .. ++|+.|+++.+.....+
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp---------~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP---------TELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC---------HHHHHTTCCCSEEECCSCCCSCCC
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC---------HHHHccCCCCCEEECCCCcCCccC
Confidence 000000010001111 2235555555544322110 011 11 56777777766443211
Q ss_pred c---------ccccCCccEEEEeccccccchh-hh--hcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcc
Q 042597 543 F---------RSGFRSLNTVRVNGCKVKDLTW-LV--FVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLE 610 (693)
Q Consensus 543 ~---------~~~~~~L~~L~l~~~~l~~~~~-l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 610 (693)
. ...+++|+.|+|++|+++.+|. +. .+++|+.|+|++|.... ++ .....+++|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp-------------~~l~~L~~L~ 779 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP-------------TQPLNSSQLK 779 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CC-------------CGGGGCTTCC
T ss_pred hHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cc-------------hhhhcCCCCC
Confidence 1 1123488888888887777663 33 67888888888886433 32 2455778888
Q ss_pred eeeccccc------cccccccCCCCCCCccEEEEccCCCCCCcCCCCC
Q 042597 611 YLRILYGR------NLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSS 652 (693)
Q Consensus 611 ~L~l~~~~------~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~ 652 (693)
.|++++++ -...+|..+..+++|+.|++++|. +..+|....
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~ 826 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT 826 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc
Confidence 88887632 245567677788888888888874 488887744
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1e-19 Score=203.91 Aligned_cols=282 Identities=16% Similarity=0.139 Sum_probs=195.7
Q ss_pred ccccccccceeeecccc-chh--hcc-CCC------CCccceeeccccccccccc-cccCCCCcccEEEccCCcchhhch
Q 042597 334 KVQEWEGAKRVSLMDNR-ILR--LLE-IPT------CSRLITLLLYENWIEEITD-GFFQPMSSLRVLALGRNFFLSKLR 402 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~-~~~--~~~-~~~------~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~p 402 (693)
....+++++.|++.+|. +.+ +|. +.. +++|++|++++|.++.+|. ..++.+++|++|++++|.....+|
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 45568899999999998 764 542 433 4899999999999997766 258999999999999994444889
Q ss_pred HhhhccccccEEeeCCCCCCccChhhhcCCC-CcEeccCCcccccccccccccCCC--ccccccccccCCCccccccCcc
Q 042597 403 SGIANLVSLHHLDLSSTNITGLPQDLKALEK-LRYLNLDHAYKLSIIPHKLKSGFS--KLEALRLLECGSGGVIEEEGNV 479 (693)
Q Consensus 403 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~-L~~L~l~~~~~l~~~p~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~ 479 (693)
.++.+++|++|++++|+++.+|..+.++++ |++|++++| .+..+|.. +..+. +|++|++++|.+....+.
T Consensus 348 -~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~---- 420 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGK---- 420 (636)
T ss_dssp -CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTC----
T ss_pred -hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchh-hhhcccCccCEEECcCCcCCCcchh----
Confidence 899999999999999999999999999999 999999999 56688876 45544 899999999987664221
Q ss_pred cccCcchhHH----hhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEecccccccccc--cc-------
Q 042597 480 LCDDAEPLMK----ELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKKRF--RS------- 545 (693)
Q Consensus 480 ~~~~~~~~~~----~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~~~--~~------- 545 (693)
.+. ...++.+|+.++++.+....+.. ..+.. ++|+.|+++.+.....+. ..
T Consensus 421 -------~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 421 -------NFDPLDPTPFKGINVSSINLSNNQISKFPK--------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp -------SSCTTCSSCCCCCCEEEEECCSSCCCSCCT--------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred -------hhcccccccccCCCCCEEECcCCccCcCCH--------HHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 111 01144566667666554221110 00111 567777776665442111 11
Q ss_pred ccCCccEEEEeccccccchh-hh--hcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccc-----
Q 042597 546 GFRSLNTVRVNGCKVKDLTW-LV--FVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYG----- 617 (693)
Q Consensus 546 ~~~~L~~L~l~~~~l~~~~~-l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----- 617 (693)
.+++|+.|++++|.++.+|. +. .+++|+.|+|++|.... ++. ....+++|+.|+++++
T Consensus 486 ~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-------------~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT-------------QPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp TGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC-------------GGGGCSSCCEEECCSCBCTTC
T ss_pred ccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cCh-------------hhhcCCCCCEEECCCCccccc
Confidence 22378888888887777663 33 67888888888876543 332 4456778888888543
Q ss_pred -ccccccccCCCCCCCccEEEEccCCCCCCcCCCCC
Q 042597 618 -RNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSS 652 (693)
Q Consensus 618 -~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~ 652 (693)
.-...+|..+..+++|+.|++++|. ++.+|....
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~ 586 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT 586 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred CcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh
Confidence 2245566667778888888887764 477776643
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.6e-19 Score=183.86 Aligned_cols=243 Identities=19% Similarity=0.209 Sum_probs=168.8
Q ss_pred ceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc---hHhhhccccccEEeeCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL---RSGIANLVSLHHLDLSS 418 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~---p~~~~~l~~L~~L~l~~ 418 (693)
+.+...++.+..+|. .-.++|++|++++|.++.+++..|..+++|++|++++| .+... |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 345666666666664 22368899999999888888887888999999999988 44433 56777889999999999
Q ss_pred CCCCccChhhhcCCCCcEeccCCccccccccc-ccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCC
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHL 497 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 497 (693)
|.++.+|..+.++++|++|++++| .+..++. ..+..+++|++|++++|..... ....+.++++|
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~l~~L 152 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------------FNGIFNGLSSL 152 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC--------------STTTTTTCTTC
T ss_pred CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc--------------chhhcccCcCC
Confidence 988888888888999999999988 5666654 3467888999999888865432 11224445555
Q ss_pred ceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch--hhhhcCCccEE
Q 042597 498 NVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT--WLVFVQNLKEL 575 (693)
Q Consensus 498 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L 575 (693)
+.++++.+..... .....+..+++|+.|++++|.++.++ .+..+++|++|
T Consensus 153 ~~L~l~~n~l~~~----------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 153 EVLKMAGNSFQEN----------------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp CEEECTTCEEGGG----------------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CEEECCCCccccc----------------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 5555543321110 00122356788888899888777753 56678889999
Q ss_pred EEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCC-CccEEEEccCC
Q 042597 576 EISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFP-KLKKIQVLHCP 642 (693)
Q Consensus 576 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~c~ 642 (693)
++++|.... ++. .....+++|+.|++.++.-....+.....+| +|+.|++++++
T Consensus 205 ~L~~N~l~~-~~~------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 205 NMSHNNFFS-LDT------------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCSB-CCS------------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCccCc-cCh------------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 998886432 211 2455678888998888743334455566674 88888888764
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=5.7e-19 Score=200.64 Aligned_cols=148 Identities=25% Similarity=0.247 Sum_probs=121.7
Q ss_pred eeecCCCccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh
Q 042597 322 LVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS 399 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
+...+.....+|... .++++.|++.+|.+..++. +.++++|++|++++|.++.+++..|..+++|++|++++| .+.
T Consensus 9 ~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 86 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELS 86 (680)
T ss_dssp EECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCC
T ss_pred eECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccC
Confidence 344444555566422 3789999999999988763 889999999999999999998888999999999999999 667
Q ss_pred hchH-hhhccccccEEeeCCCCCCccC-hhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCcc
Q 042597 400 KLRS-GIANLVSLHHLDLSSTNITGLP-QDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 400 ~~p~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
.+|. .|+++++|++|++++|+++.+| ..++++++|++|++++| .+...+...++++++|++|++.+|.+...
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc
Confidence 7775 5899999999999999999976 46899999999999999 45555544478899999999999876543
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1.9e-19 Score=201.76 Aligned_cols=272 Identities=17% Similarity=0.206 Sum_probs=178.1
Q ss_pred ccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 340 GAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
+++.+++.+|.+..++. +..+++|++|++++|.++.+|.. +..+++|++|++++|......|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 67788888888877754 77788888888888888877665 6788888888888884434446678888888888888
Q ss_pred CCCCC-ccChh-hhcCCCCcEeccCCcccccccc--cccccCCCccccccccccCCCccccccCcccccCcchhHHhhcc
Q 042597 418 STNIT-GLPQD-LKALEKLRYLNLDHAYKLSIIP--HKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLG 493 (693)
Q Consensus 418 ~~~i~-~lp~~-~~~l~~L~~L~l~~~~~l~~~p--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (693)
+|.+. .+|.. +.++++|++|++++| .+..++ ...+..+++|++|++++|..... ....+.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~ 398 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSL--------------KTEAFKE 398 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEE--------------CTTTTTT
T ss_pred CCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcC--------------CHHHhcC
Confidence 88776 46554 778888888888888 444442 22257788888888888765432 1223445
Q ss_pred CCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccc--cccccccCCccEEEEecccccc--c---hh
Q 042597 494 LKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKD--L---TW 565 (693)
Q Consensus 494 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~--~---~~ 565 (693)
+++|+.++++.+......... .+.. ++|+.|+++++.... ...+..+++|++|++++|.++. + ..
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQS-------PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCC-------TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CccCCeEECCCCcCCCcccch-------hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh
Confidence 566666666544322110000 0122 567777777765443 2234667888888888886654 1 34
Q ss_pred hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCC
Q 042597 566 LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELK 645 (693)
Q Consensus 566 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~ 645 (693)
+..+++|++|++++|......+ .....+++|+.|+++++.-....+.....+++| .|++++| +++
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~ 536 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQ-------------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HIS 536 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECT-------------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCC
T ss_pred hccCCCccEEECCCCccCccCh-------------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-ccc
Confidence 6677888888888875433221 245667788888887764333344556677778 8888776 444
Q ss_pred CcCC
Q 042597 646 KLPL 649 (693)
Q Consensus 646 ~lp~ 649 (693)
.+|.
T Consensus 537 ~~~~ 540 (606)
T 3t6q_A 537 IILP 540 (606)
T ss_dssp CCCG
T ss_pred ccCH
Confidence 4443
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=191.92 Aligned_cols=310 Identities=15% Similarity=0.111 Sum_probs=189.0
Q ss_pred ccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh-hchHhhhcccc
Q 042597 334 KVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS-KLRSGIANLVS 410 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~ 410 (693)
....+++++.|++.+|.+..+. .+..+++|++|++++|.++.+|.. .+++|++|++++|.... .+|..++++++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCc
Confidence 3556788999999999988873 488899999999999999887765 78999999999994333 36788999999
Q ss_pred ccEEeeCCCCCCccChhhhcCCCC--cEeccCCccc--ccccccc-------------------------cccCCCcccc
Q 042597 411 LHHLDLSSTNITGLPQDLKALEKL--RYLNLDHAYK--LSIIPHK-------------------------LKSGFSKLEA 461 (693)
Q Consensus 411 L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~~--l~~~p~~-------------------------~~~~l~~L~~ 461 (693)
|++|++++|.++. ..+..+++| +.|++++|.. ....|.. .+..+++|+.
T Consensus 117 L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 194 (520)
T 2z7x_B 117 LKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194 (520)
T ss_dssp CCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred ceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence 9999999998876 356677777 8888887743 2222222 1234566666
Q ss_pred ccccccC-------CCccccc---------------------------------------cCcccccCcchhHH--hhcc
Q 042597 462 LRLLECG-------SGGVIEE---------------------------------------EGNVLCDDAEPLMK--ELLG 493 (693)
Q Consensus 462 L~l~~~~-------~~~~~~~---------------------------------------~~~~~~~~~~~~~~--~l~~ 493 (693)
|++.+|. ....++. ..+...+..+..+. ...+
T Consensus 195 L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274 (520)
T ss_dssp CCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred ccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence 6666553 0000000 00000000010000 0033
Q ss_pred CCCCceeEEEeech----hhHhhh---hccchhhh--------h-hcc-cccceeEeccccccc--cccccccCCccEEE
Q 042597 494 LKHLNVLSWSFRSS----LAVQKF---FKYPKLEL--------E-LEN-TNLEEMKIDSTEEVK--KRFRSGFRSLNTVR 554 (693)
Q Consensus 494 L~~L~~l~~~~~~~----~~~~~~---~~~~~l~~--------~-l~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~ 554 (693)
++.|+.++++.+.. ..+... ..+..+.. . ... ++|++|+++++.... +.....+++|+.|+
T Consensus 275 l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp CCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred CceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 34444444433321 000000 00000000 0 012 677788887776544 33456788888888
Q ss_pred Eeccccccch----hhhhcCCccEEEEeccccchhhhcc--cccccccccc-------cccCCcC-CCcceeeccccccc
Q 042597 555 VNGCKVKDLT----WLVFVQNLKELEISFCHAVEDIIIV--DKLRDISEII-------GLEHNFF-AQLEYLRILYGRNL 620 (693)
Q Consensus 555 l~~~~l~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~-~~L~~L~l~~~~~l 620 (693)
+++|.++.++ .+..+++|++|++++|.....++.. .....+..+. ......+ ++|+.|+++++ ++
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l 433 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KI 433 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CC
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cc
Confidence 8888777644 3567888888888888765534432 1111111110 0111222 68999999887 57
Q ss_pred cccccCCCCCCCccEEEEccCCCCCCcCCC
Q 042597 621 KSIYPNPLPFPKLKKIQVLHCPELKKLPLN 650 (693)
Q Consensus 621 ~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~ 650 (693)
+.+|.....+++|+.|++++| +++.+|..
T Consensus 434 ~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 434 KSIPKQVVKLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred cccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence 788887789999999999987 78899987
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=5.1e-19 Score=195.79 Aligned_cols=131 Identities=20% Similarity=0.257 Sum_probs=91.2
Q ss_pred cccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh--hchHhhhcccc
Q 042597 335 VQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS--KLRSGIANLVS 410 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~ 410 (693)
...+++++.|++.+|.+..++ .+..+++|++|++++|.++..++..|+.+++|++|++++| .+. ..|..++++++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCC
Confidence 456678888888888887765 3778888888888888888888777788888888888888 444 34556777888
Q ss_pred ccEEeeCCCC-CCccC-hhhhcCCCCcEeccCCcccccccccccccCCCcccccccccc
Q 042597 411 LHHLDLSSTN-ITGLP-QDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 411 L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 467 (693)
|++|++++|. +..+| ..+.++++|++|++++|......|.. ++.+++|++|++..|
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence 8888888876 55565 35777788888888777433334433 444444444444433
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.7e-18 Score=178.24 Aligned_cols=278 Identities=17% Similarity=0.166 Sum_probs=199.0
Q ss_pred CCCccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH
Q 042597 326 GIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS 403 (693)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~ 403 (693)
+.....+|.. ..++++.|++.+|.+..++. +.++++|++|++++|.++.+.+..|..+++|++|++++| .+..+|.
T Consensus 40 ~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~ 117 (330)
T 1xku_A 40 DLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE 117 (330)
T ss_dssp TSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS
T ss_pred CCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 3344444432 23689999999999998864 889999999999999999998888999999999999999 6778886
Q ss_pred hhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccc--cccccccCCCccccccccccCCCccccccCccc
Q 042597 404 GIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSI--IPHKLKSGFSKLEALRLLECGSGGVIEEEGNVL 480 (693)
Q Consensus 404 ~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 480 (693)
.+. ++|++|++++|.++.++.. +.++++|++|++++|. +.. +....+.++++|++|++.+|.+...
T Consensus 118 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-------- 186 (330)
T 1xku_A 118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTI-------- 186 (330)
T ss_dssp SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSC--------
T ss_pred hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccC--------
Confidence 654 7999999999999997764 8899999999999994 432 3333378899999999999876542
Q ss_pred ccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccccc--cccccCCccEEEEec
Q 042597 481 CDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKKR--FRSGFRSLNTVRVNG 557 (693)
Q Consensus 481 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~~--~~~~~~~L~~L~l~~ 557 (693)
+..+ .++|+.++++.+...... ...+.. ++|+.|+++++...... .+..+++|++|++++
T Consensus 187 ----~~~~-----~~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 187 ----PQGL-----PPSLTELHLDGNKITKVD--------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp ----CSSC-----CTTCSEEECTTSCCCEEC--------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred ----Cccc-----cccCCEEECCCCcCCccC--------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 1111 156666766654322110 011122 67888999887655432 467799999999999
Q ss_pred cccccch-hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccc---cccCCCCCCCc
Q 042597 558 CKVKDLT-WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKS---IYPNPLPFPKL 633 (693)
Q Consensus 558 ~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~~~~L 633 (693)
|.++.+| .+..+++|++|++++|.. +.++... +... .....++.|+.|++.+++ +.. -+.....+++|
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~N~i-~~~~~~~----f~~~--~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHNNNI-SAIGSND----FCPP--GYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSSCC-CCCCTTS----SSCS--SCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCG
T ss_pred CcCccCChhhccCCCcCEEECCCCcC-CccChhh----cCCc--ccccccccccceEeecCc-ccccccCccccccccce
Confidence 9988876 577899999999999964 3332210 0000 012235789999998875 332 23345668889
Q ss_pred cEEEEccC
Q 042597 634 KKIQVLHC 641 (693)
Q Consensus 634 ~~L~l~~c 641 (693)
+.++++++
T Consensus 322 ~~l~L~~N 329 (330)
T 1xku_A 322 AAVQLGNY 329 (330)
T ss_dssp GGEEC---
T ss_pred eEEEeccc
Confidence 99998775
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=6e-19 Score=189.83 Aligned_cols=129 Identities=28% Similarity=0.357 Sum_probs=70.2
Q ss_pred cccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccEEe
Q 042597 339 EGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~ 415 (693)
++++.|++.+|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 45555555555555542 2555555555555555555555555555555555555555 3333332 255555555555
Q ss_pred eCCCCCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 416 LSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 416 l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
+++|+++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 55555555443 345555555555555545555554445555555555555554
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=187.62 Aligned_cols=129 Identities=27% Similarity=0.368 Sum_probs=67.9
Q ss_pred cccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccEEe
Q 042597 339 EGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~ 415 (693)
++++.|++.+|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 44555555555555443 2455555555555555555555555555555555555555 3333332 355555555555
Q ss_pred eCCCCCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 416 LSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 416 l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
+++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 55555555443 345555555555555445555554444555555555555554
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=4e-18 Score=188.89 Aligned_cols=128 Identities=23% Similarity=0.208 Sum_probs=109.1
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLS 417 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~ 417 (693)
...+.+++.++.+..+|.-. .++|++|++++|.++.+++..|..+++|++|++++| .+..+ |..|.++++|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence 34478999999999887522 389999999999999999888999999999999999 55544 7789999999999999
Q ss_pred CCCCCccChhhhcCCCCcEeccCCccccccccc-ccccCCCccccccccccCCCc
Q 042597 418 STNITGLPQDLKALEKLRYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 418 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~ 471 (693)
+|+++.+|.. .+++|++|++++| .+..+|. ..++++++|++|++++|.+..
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc
Confidence 9999999977 8999999999999 5666552 337899999999999987653
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=4.1e-18 Score=188.12 Aligned_cols=248 Identities=19% Similarity=0.129 Sum_probs=180.4
Q ss_pred cCCCccCCcccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh
Q 042597 325 AGIKLTEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG 404 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~ 404 (693)
.+.....+|.... ++++.|++.+|.+..++. .+++|++|++++|.++.++. .+++|++|++++| .+..+|.
T Consensus 48 s~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~- 118 (622)
T 3g06_A 48 GESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA- 118 (622)
T ss_dssp CSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC-
T ss_pred cCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC-
Confidence 3334444544222 688888888888887776 57888888888888887765 5788888888888 6666765
Q ss_pred hhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCc
Q 042597 405 IANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDA 484 (693)
Q Consensus 405 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 484 (693)
.+.+|++|++++|+++.+|.. +++|++|++++| .+..+|. .+++|+.|++.+|.+...
T Consensus 119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l------------ 176 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL------------ 176 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC------------
T ss_pred --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC------------
Confidence 567888888888888888764 478888888888 6667764 356788888887765442
Q ss_pred chhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch
Q 042597 485 EPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT 564 (693)
Q Consensus 485 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 564 (693)
+ ..+++|+.++++.+....+. . ...+|+.|.+.++.....+ ..+++|+.|++++|.++.+|
T Consensus 177 ~------~~~~~L~~L~Ls~N~l~~l~---~--------~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 177 P------MLPSGLQELSVSDNQLASLP---T--------LPSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp C------CCCTTCCEEECCSSCCSCCC---C--------CCTTCCEEECCSSCCSSCC--CCCTTCCEEECCSSCCSCCC
T ss_pred c------ccCCCCcEEECCCCCCCCCC---C--------ccchhhEEECcCCcccccC--CCCCCCCEEEccCCccCcCC
Confidence 1 23466777777665432211 1 1157788888777554333 34688999999999888887
Q ss_pred hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCC
Q 042597 565 WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCP 642 (693)
Q Consensus 565 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 642 (693)
..+++|+.|++++|.. +.+ +. .+++|+.|++.+| +++.+|..+..+++|+.|++++|+
T Consensus 238 --~~l~~L~~L~Ls~N~L-~~l---------------p~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 --VLPSELKELMVSGNRL-TSL---------------PM-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCCTTCCEEECCSSCC-SCC---------------CC-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred --CCCCcCcEEECCCCCC-CcC---------------Cc-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 5678999999999853 222 22 6789999999887 678888888899999999999876
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=178.81 Aligned_cols=254 Identities=18% Similarity=0.150 Sum_probs=186.1
Q ss_pred eeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCCCC
Q 042597 343 RVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSSTNI 421 (693)
Q Consensus 343 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~i 421 (693)
..+..++.+..+|. .-.++|++|++++|.++.+++..+..+++|++|++++| .+..+ |..+.++++|++|++++|++
T Consensus 35 ~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC
Confidence 35666777777764 22358999999999999999878999999999999999 55544 56799999999999999999
Q ss_pred CccChh-hhcCCCCcEeccCCccccccccc-ccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCce
Q 042597 422 TGLPQD-LKALEKLRYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNV 499 (693)
Q Consensus 422 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 499 (693)
+.+|.. ++++++|++|++++| .+..+|. ..+.++++|++|++.+|.....+ ....+.++++|+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-------------~~~~~~~l~~L~~ 178 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI-------------QRKDFAGLTFLEE 178 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-------------CTTTTTTCCEEEE
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc-------------CHHHccCCCCCCE
Confidence 999877 889999999999999 7778887 55789999999999988533221 1223456666777
Q ss_pred eEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchh--hhhcCCccEEEE
Q 042597 500 LSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTW--LVFVQNLKELEI 577 (693)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~l 577 (693)
++++.+.... + ....+..+++|++|++++|.++.++. ...+++|+.|++
T Consensus 179 L~l~~n~l~~---------------------~--------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 179 LEIDASDLQS---------------------Y--------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp EEEEETTCCE---------------------E--------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred EECCCCCcCc---------------------c--------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 7766543111 0 01233568899999999998887764 345899999999
Q ss_pred eccccchhhhcccccccccccccccCCcCCCcceeeccccc----cccccccCCCCCCCccEEEEccCCCCCCcCCCCC
Q 042597 578 SFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGR----NLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSS 652 (693)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~ 652 (693)
++|......+. .+ ......+.++.+.+.++. .+..++.....+++|+.|++++| +++.+|....
T Consensus 230 ~~n~l~~~~~~--------~l--~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~ 297 (353)
T 2z80_A 230 RDTDLDTFHFS--------EL--STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF 297 (353)
T ss_dssp ESCBCTTCCCC----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCCcccccccc--------cc--ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHH
Confidence 99974332111 00 122345566777766542 23345666778999999999987 7889998753
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=9.4e-19 Score=178.31 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=176.0
Q ss_pred Cccceeecccccccc--ccccccCCCCcccEEEccC-CcchhhchHhhhccccccEEeeCCCCCC-ccChhhhcCCCCcE
Q 042597 361 SRLITLLLYENWIEE--ITDGFFQPMSSLRVLALGR-NFFLSKLRSGIANLVSLHHLDLSSTNIT-GLPQDLKALEKLRY 436 (693)
Q Consensus 361 ~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~-~~~~~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~ 436 (693)
.+++.|++++|.+++ ..+..+..+++|++|++++ |.....+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999986 5555699999999999995 7566688999999999999999999998 48989999999999
Q ss_pred eccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCC-CCceeEEEeechhhHhhhhc
Q 042597 437 LNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLK-HLNVLSWSFRSSLAVQKFFK 515 (693)
Q Consensus 437 L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~l~~~~~~~~~~~~~~~ 515 (693)
|++++|.....+|.. +..+++|++|++++|.+... .+ ..+.+++ .|+.++++.+....
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-----------~p---~~l~~l~~~L~~L~L~~N~l~~------ 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA-----------IP---DSYGSFSKLFTSMTISRNRLTG------ 188 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE-----------CC---GGGGCCCTTCCEEECCSSEEEE------
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc-----------CC---HHHhhhhhcCcEEECcCCeeec------
Confidence 999999544477776 68999999999999976543 22 2334444 55555554332110
Q ss_pred cchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccc--hhhhhcCCccEEEEeccccchhhhcccccc
Q 042597 516 YPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDL--TWLVFVQNLKELEISFCHAVEDIIIVDKLR 593 (693)
Q Consensus 516 ~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 593 (693)
.....+..++ |+.|++++|.++.. ..+..+++|+.|++++|.....++
T Consensus 189 -----------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------ 238 (313)
T 1ogq_A 189 -----------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG------ 238 (313)
T ss_dssp -----------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG------
T ss_pred -----------------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC------
Confidence 0011223444 99999999988753 356779999999999997643322
Q ss_pred cccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCC
Q 042597 594 DISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLN 650 (693)
Q Consensus 594 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~ 650 (693)
....+++|+.|++.++.-...+|..+..+++|+.|++++|+--..+|..
T Consensus 239 --------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 239 --------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp --------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred --------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 3456899999999987544477888889999999999997543366665
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=2.5e-17 Score=185.69 Aligned_cols=145 Identities=26% Similarity=0.272 Sum_probs=122.6
Q ss_pred ecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc
Q 042597 324 RAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL 401 (693)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 401 (693)
..+.....+|.. -..+++.|++++|.+..++ .|.++++|++|+|++|.++.++++.|..+++|++|+|++| .+..+
T Consensus 38 c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l 115 (635)
T 4g8a_A 38 CMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSL 115 (635)
T ss_dssp CTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred CCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCC
Confidence 344556666642 2368999999999999987 4899999999999999999999998999999999999999 67777
Q ss_pred h-HhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccc--cccccccCCCccccccccccCCCcc
Q 042597 402 R-SGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSI--IPHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 402 p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
| ..|.++++|++|++++|+++.+|+. ++++++|++|++++| .+.. +|.. ++.+++|++|++.+|.+...
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcccccc
Confidence 6 4589999999999999999998765 899999999999999 5544 3444 68899999999999876543
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=2.6e-19 Score=182.90 Aligned_cols=239 Identities=17% Similarity=0.144 Sum_probs=129.3
Q ss_pred cccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEee
Q 042597 339 EGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDL 416 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 416 (693)
++++.|++.+|.+..++ .+..+++|++|++++|.++..++ +..+++|++|++++| .+..+| ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEEC
Confidence 46666666666666554 35666666666666666665554 566666666666666 444433 3366666666
Q ss_pred CCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhh-ccCC
Q 042597 417 SSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKEL-LGLK 495 (693)
Q Consensus 417 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~ 495 (693)
++|+++.++.. .+++|++|++++| .+..++...++.+++|++|++++|.+... ....+ .+++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~~~~~l~ 169 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV--------------NFAELAASSD 169 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEE--------------EGGGGGGGTT
T ss_pred CCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcc--------------cHHHHhhccC
Confidence 66666665432 2566666666666 44555443355666666666666654432 11111 2344
Q ss_pred CCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch-hhhhcCCccE
Q 042597 496 HLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT-WLVFVQNLKE 574 (693)
Q Consensus 496 ~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~~ 574 (693)
+|+.++++. +.....+....+++|+.|++++|.++.++ .+..+++|+.
T Consensus 170 ~L~~L~L~~-------------------------------N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 170 TLEHLNLQY-------------------------------NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp TCCEEECTT-------------------------------SCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred cCCEEECCC-------------------------------CcCcccccccccccCCEEECCCCcCCcchhhhcccCcccE
Confidence 444444443 32222222233566666666666555542 3455666666
Q ss_pred EEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccc-cccccCCCCCCCccEEEEccCCCCCC
Q 042597 575 LEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNL-KSIYPNPLPFPKLKKIQVLHCPELKK 646 (693)
Q Consensus 575 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~L~~ 646 (693)
|++++|... .++ .....+++|+.|++.+++-. ..++.....+++|+.|++.+|+.++.
T Consensus 219 L~L~~N~l~-~l~-------------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 219 ISLRNNKLV-LIE-------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTSCCC-EEC-------------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EECcCCccc-chh-------------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 666666432 222 12344566666666655322 23333344556666666655544443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=183.90 Aligned_cols=238 Identities=19% Similarity=0.222 Sum_probs=174.5
Q ss_pred cceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCC
Q 042597 341 AKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSST 419 (693)
Q Consensus 341 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~ 419 (693)
.+.+...+..+..+|. .-.++++.|++++|.++.+++..|..+++|++|+|++| .+..+ +..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 3456666666777764 12378999999999999999888999999999999999 55544 567999999999999999
Q ss_pred CCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 420 NITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 420 ~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
+++.+|. .+.++++|++|++++| .+..+|...+.++++|++|++.+|.....++ ...+.++++|+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-------------~~~~~~l~~L~ 188 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYIS-------------EGAFEGLSNLR 188 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------------TTTTTTCSSCC
T ss_pred cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeC-------------cchhhcccccC
Confidence 9999876 4889999999999999 6788887768999999999999876544311 22456778888
Q ss_pred eeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccc--cccccccCCccEEEEeccccccch--hhhhcCCcc
Q 042597 499 VLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKDLT--WLVFVQNLK 573 (693)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~ 573 (693)
.++++.+....+.. +.. .+|+.|+++++.... ...+..+++|++|++++|.++.++ .+..+++|+
T Consensus 189 ~L~L~~n~l~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 189 YLNLAMCNLREIPN----------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp EEECTTSCCSSCCC----------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred eecCCCCcCccccc----------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 88877664332221 122 577777777765443 234566778888888888776654 455677888
Q ss_pred EEEEeccccchhhhcccccccccccccccCCcCCCcceeecccc
Q 042597 574 ELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYG 617 (693)
Q Consensus 574 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 617 (693)
.|+|++|... .++. .....+++|+.|++.++
T Consensus 259 ~L~L~~N~l~-~~~~------------~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 259 EINLAHNNLT-LLPH------------DLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EEECTTSCCC-CCCT------------TTTSSCTTCCEEECCSS
T ss_pred EEECCCCCCC-ccCh------------hHhccccCCCEEEcCCC
Confidence 8888887532 2221 23455677788877654
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=3e-18 Score=184.31 Aligned_cols=239 Identities=23% Similarity=0.194 Sum_probs=173.0
Q ss_pred cceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCC
Q 042597 341 AKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 341 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 420 (693)
.+.+...+..+..+|. .-.+++++|++++|.++.+++..|..+++|++|+|++|......|..|.++++|++|+|++|+
T Consensus 56 ~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3445566666666663 123689999999999999988889999999999999994434445779999999999999999
Q ss_pred CCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCce
Q 042597 421 ITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNV 499 (693)
Q Consensus 421 i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 499 (693)
++.+|.. +.++++|++|++++| .+..+|...+.++++|++|++.+|.....++ ...+.++++|+.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-------------~~~~~~l~~L~~ 200 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS-------------EGAFEGLFNLKY 200 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------------TTTTTTCTTCCE
T ss_pred CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC-------------hhhccCCCCCCE
Confidence 9998766 888999999999999 6788887778999999999999876554321 224567778888
Q ss_pred eEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccc--cccccccCCccEEEEeccccccch--hhhhcCCccE
Q 042597 500 LSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKDLT--WLVFVQNLKE 574 (693)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~ 574 (693)
++++.+....... +.. .+|+.|+++++.... ...+..+++|+.|++++|.++.++ .+..+++|+.
T Consensus 201 L~L~~n~l~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 201 LNLGMCNIKDMPN----------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp EECTTSCCSSCCC----------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred EECCCCccccccc----------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 8877664332221 122 567777777665443 234566777888888888666643 4556778888
Q ss_pred EEEeccccchhhhcccccccccccccccCCcCCCcceeecccc
Q 042597 575 LEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYG 617 (693)
Q Consensus 575 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 617 (693)
|+|++|.. ..++. .....+++|+.|++.++
T Consensus 271 L~L~~N~l-~~~~~------------~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 271 LNLAHNNL-SSLPH------------DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EECCSSCC-SCCCT------------TSSTTCTTCCEEECCSS
T ss_pred EECCCCcC-CccCh------------HHhccccCCCEEEccCC
Confidence 88877753 22221 23455677777777654
No 56
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=1.3e-17 Score=189.56 Aligned_cols=297 Identities=16% Similarity=0.168 Sum_probs=160.2
Q ss_pred ccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh-----hchH----hhhcc
Q 042597 340 GAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS-----KLRS----GIANL 408 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~p~----~~~~l 408 (693)
+++.|++.+|.+..++ .+..+++|++|++++|.++..++..|..+++|++|++++|.... .+|. .+..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 4788888888777664 36778888888888888887777777888888888887762111 2332 56678
Q ss_pred ccccEEeeCCCCCCccCh-hhhcCCCCcEeccCCccc-ccccccccccC--CCccccccccccCCCccccccCc------
Q 042597 409 VSLHHLDLSSTNITGLPQ-DLKALEKLRYLNLDHAYK-LSIIPHKLKSG--FSKLEALRLLECGSGGVIEEEGN------ 478 (693)
Q Consensus 409 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~-l~~~p~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~------ 478 (693)
++|++|++++|.++.+++ .+.++++|++|++++|.. +..++...+.. .++|+.|++.+|.+....+....
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 888888888888877543 477788888888777631 22233221221 23555565555554332110000
Q ss_pred ---ccccCcc--hhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEecccccc----ccccccccC
Q 042597 479 ---VLCDDAE--PLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEV----KKRFRSGFR 548 (693)
Q Consensus 479 ---~~~~~~~--~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~----~~~~~~~~~ 548 (693)
....... -....+.++++|+.++++.+...... ...+.. +.|+.|.+..+... .+..+..++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT--------RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC--------TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeC--------hhhhhcCcccccchhccccccccccCCcccccCC
Confidence 0000000 00012333344444444333211000 001112 56666666655432 123446677
Q ss_pred CccEEEEeccccccchh--hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccC
Q 042597 549 SLNTVRVNGCKVKDLTW--LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPN 626 (693)
Q Consensus 549 ~L~~L~l~~~~l~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 626 (693)
+|+.|++++|.++.++. +..+++|++|++++|.... ++.. .++.........+++|+.|++.++ .++.++..
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~----~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~ 554 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR-LWKH----ANPGGPIYFLKGLSHLHILNLESN-GFDEIPVE 554 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG-GGST----TSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc-cchh----hccCCcchhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 88888888887776653 5667888888888875422 2110 000000012345566666666654 35555543
Q ss_pred -CCCCCCccEEEEccCCCCCCcCCCC
Q 042597 627 -PLPFPKLKKIQVLHCPELKKLPLNS 651 (693)
Q Consensus 627 -~~~~~~L~~L~l~~c~~L~~lp~~~ 651 (693)
+..+++|+.|++++ .+++.+|...
T Consensus 555 ~~~~l~~L~~L~Ls~-N~l~~l~~~~ 579 (680)
T 1ziw_A 555 VFKDLFELKIIDLGL-NNLNTLPASV 579 (680)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred HcccccCcceeECCC-CCCCcCCHhH
Confidence 45566666666644 3555555543
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=195.58 Aligned_cols=290 Identities=18% Similarity=0.155 Sum_probs=196.8
Q ss_pred cccccccccceeeeccccc-hhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh--hhc
Q 042597 333 PKVQEWEGAKRVSLMDNRI-LRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG--IAN 407 (693)
Q Consensus 333 ~~~~~~~~l~~l~l~~~~~-~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~--~~~ 407 (693)
.....+.+++.|++.+|.. ..++ .+.++++|++|++++|.++.+.+..|..+++|++|+|++|......|.. +++
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 3456778899999999843 3442 4889999999999999999988888999999999999999444445655 889
Q ss_pred cccccEEeeCCCCCCcc--ChhhhcCCCCcEeccCCcccccccccccccCC--CccccccccccCCCcccccc-------
Q 042597 408 LVSLHHLDLSSTNITGL--PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGF--SKLEALRLLECGSGGVIEEE------- 476 (693)
Q Consensus 408 l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l--~~L~~L~l~~~~~~~~~~~~------- 476 (693)
+++|++|++++|.++.+ +..++++++|++|++++|......+.. +..+ ++|+.|++..|......+..
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCc
Confidence 99999999999999885 356899999999999998433333333 4555 67777777777655432211
Q ss_pred ------------CcccccCcchhHHhh---------------------------------ccC--CCCceeEEEeechhh
Q 042597 477 ------------GNVLCDDAEPLMKEL---------------------------------LGL--KHLNVLSWSFRSSLA 509 (693)
Q Consensus 477 ------------~~~~~~~~~~~~~~l---------------------------------~~L--~~L~~l~~~~~~~~~ 509 (693)
.+...+..+..+... .++ ++|+.++++.+....
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 010000111111111 111 334444443332111
Q ss_pred Hhhhhccchhhhhhcc-cccceeEeccccccc--cccccccCCccEEEEeccccccc--hhhhhcCCccEEEEeccccch
Q 042597 510 VQKFFKYPKLELELEN-TNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKDL--TWLVFVQNLKELEISFCHAVE 584 (693)
Q Consensus 510 ~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~l~~~~~~~ 584 (693)
.. ...+.. ++|+.|+++.+.... ...+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.. .
T Consensus 281 ~~--------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~ 351 (844)
T 3j0a_A 281 LN--------SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-A 351 (844)
T ss_dssp EC--------SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC-C
T ss_pred cC--------hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC-C
Confidence 00 011223 788999998876554 33567899999999999988775 3577799999999999964 3
Q ss_pred hhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCC
Q 042597 585 DIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLN 650 (693)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~ 650 (693)
.++. .....+++|+.|++.++ .++.++ .+++|+.|++++| +++.+|..
T Consensus 352 ~~~~------------~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N-~l~~l~~~ 399 (844)
T 3j0a_A 352 IIQD------------QTFKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGN-KLVTLPKI 399 (844)
T ss_dssp CCCS------------SCSCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEESC-CCCCCCCC
T ss_pred ccCh------------hhhcCCCCCCEEECCCC-CCCccc----CCCCcchhccCCC-Cccccccc
Confidence 3321 24567899999999886 455443 3899999999875 56677654
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=8.8e-20 Score=186.44 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=169.0
Q ss_pred eeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCC
Q 042597 344 VSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNI 421 (693)
Q Consensus 344 l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i 421 (693)
..+..+.+...+. +..+++|++|++++|.++.+++..|..+++|++|++++| .+...+. +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcc
Confidence 3444454444321 456778999999999988888777888999999999998 5554443 88889999999999988
Q ss_pred CccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeE
Q 042597 422 TGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLS 501 (693)
Q Consensus 422 ~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~ 501 (693)
+++| ..++|++|++++| .+..++. ..+++|++|++++|.+... .+ ..+.++++|+.++
T Consensus 93 ~~l~----~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~-----------~~---~~~~~l~~L~~L~ 150 (317)
T 3o53_A 93 QELL----VGPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITML-----------RD---LDEGCRSRVQYLD 150 (317)
T ss_dssp EEEE----ECTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSG-----------GG---BCTGGGSSEEEEE
T ss_pred cccc----CCCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCCCc-----------cc---hhhhccCCCCEEE
Confidence 8776 3488999999988 6666664 3578899999988876543 11 1233445555555
Q ss_pred EEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEeccc
Q 042597 502 WSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEISFCH 581 (693)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~ 581 (693)
++.+.. ..+.. ......+++|+.|++++|.++.++....+++|++|++++|.
T Consensus 151 Ls~N~l---------------------~~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 151 LKLNEI---------------------DTVNF-------AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp CTTSCC---------------------CEEEG-------GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC
T ss_pred CCCCCC---------------------CcccH-------HHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCc
Confidence 443221 11100 01123578999999999999988877789999999999996
Q ss_pred cchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCC
Q 042597 582 AVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPEL 644 (693)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L 644 (693)
.. .++. ....+++|+.|++.++ .++.++.....+++|+.|++++++--
T Consensus 203 l~-~l~~-------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 203 LA-FMGP-------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CC-EECG-------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CC-cchh-------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 43 2322 3556899999999987 68888888889999999999987644
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=7.6e-18 Score=169.39 Aligned_cols=126 Identities=22% Similarity=0.300 Sum_probs=84.8
Q ss_pred ceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~ 420 (693)
+.++..++.+..+|. .-.++|+.|++++|.++.+++..|..+++|++|++++| .+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 344555555555542 22457777777777777777766777777888888777 44433 6667777778888887775
Q ss_pred -CCcc-ChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 421 -ITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 421 -i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
++.+ |..+.++++|++|++++| .+..++...+.++++|++|++.+|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccc
Confidence 7766 555777777777777777 455554444667777777777776543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.3e-18 Score=174.93 Aligned_cols=215 Identities=22% Similarity=0.251 Sum_probs=168.1
Q ss_pred cCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-
Q 042597 325 AGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL- 401 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~- 401 (693)
.+.....+|. ...++++.|++.+|.+..++ .+..+++|++|++++|.++.+.+..|..+++|++|++++|..+..+
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred CcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 3444455543 34578999999999999887 3889999999999999999998888999999999999999536665
Q ss_pred hHhhhccccccEEeeCCCCCCcc-ChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCccc
Q 042597 402 RSGIANLVSLHHLDLSSTNITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVL 480 (693)
Q Consensus 402 p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 480 (693)
|..+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..++...+..+++|++|++++|.+...
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------- 168 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSV-------- 168 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEE--------
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccccc--------
Confidence 67899999999999999999997 556889999999999999 67788876678999999999999976542
Q ss_pred ccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEecccc
Q 042597 481 CDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKV 560 (693)
Q Consensus 481 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l 560 (693)
. ...+.++++|+.++++.+... .+ ....+..+++|+.|++++|.+
T Consensus 169 ---~---~~~~~~l~~L~~L~l~~n~l~---------------------~~--------~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 169 ---P---ERAFRGLHSLDRLLLHQNRVA---------------------HV--------HPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ---C---TTTTTTCTTCCEEECCSSCCC---------------------EE--------CTTTTTTCTTCCEEECCSSCC
T ss_pred ---C---HHHhcCccccCEEECCCCccc---------------------cc--------CHhHccCcccccEeeCCCCcC
Confidence 1 112445666666666543211 00 112335678999999999988
Q ss_pred ccch--hhhhcCCccEEEEeccccch
Q 042597 561 KDLT--WLVFVQNLKELEISFCHAVE 584 (693)
Q Consensus 561 ~~~~--~l~~l~~L~~L~l~~~~~~~ 584 (693)
+.++ .+..+++|+.|++++|+...
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CcCCHHHcccCcccCEEeccCCCccC
Confidence 8876 36778999999999987543
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=1.6e-18 Score=176.28 Aligned_cols=237 Identities=21% Similarity=0.229 Sum_probs=168.5
Q ss_pred ecCCCccCCcccccccccceeeeccccchhhcc--CCCCCccceeecccccccccc--ccccCCCCcccEEEccCCcchh
Q 042597 324 RAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEIT--DGFFQPMSSLRVLALGRNFFLS 399 (693)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
..+.....+|. ...++++.|++.+|.+..++. +.++++|++|++++|.++... +..+..+++|++|++++| .+.
T Consensus 14 c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~ 91 (306)
T 2z66_A 14 CNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVI 91 (306)
T ss_dssp CCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEE
T ss_pred cCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccc
Confidence 34444555554 234789999999999998875 789999999999999887653 333667999999999999 777
Q ss_pred hchHhhhccccccEEeeCCCCCCccCh--hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccC
Q 042597 400 KLRSGIANLVSLHHLDLSSTNITGLPQ--DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEG 477 (693)
Q Consensus 400 ~~p~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 477 (693)
.+|..+..+++|++|++++|.++.++. .+.++++|++|++++| .+...+...+..+++|++|++.+|.+...
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 165 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN----- 165 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGG-----
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccc-----
Confidence 888889999999999999999999774 6899999999999999 45555544478999999999999865431
Q ss_pred cccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEec
Q 042597 478 NVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNG 557 (693)
Q Consensus 478 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~ 557 (693)
.....+.++++|+.++++.+.... + ....+..+++|+.|++++
T Consensus 166 --------~~~~~~~~l~~L~~L~Ls~n~l~~---------------------~--------~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 166 --------FLPDIFTELRNLTFLDLSQCQLEQ---------------------L--------SPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp --------EECSCCTTCTTCCEEECTTSCCCE---------------------E--------CTTTTTTCTTCCEEECTT
T ss_pred --------cchhHHhhCcCCCEEECCCCCcCC---------------------c--------CHHHhcCCCCCCEEECCC
Confidence 012234556666666665432111 0 011234567777777777
Q ss_pred cccccch--hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcC-CCcceeeccccc
Q 042597 558 CKVKDLT--WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFF-AQLEYLRILYGR 618 (693)
Q Consensus 558 ~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 618 (693)
|.++.++ .+..+++|+.|++++|......+ .....+ ++|+.|++.+++
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-------------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-------------SSCCCCCTTCCEEECTTCC
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCH-------------HHHHhhhccCCEEEccCCC
Confidence 7766654 35567777778777775433222 133444 377777776653
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=8.1e-18 Score=173.22 Aligned_cols=246 Identities=17% Similarity=0.189 Sum_probs=174.2
Q ss_pred CccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCCCCCcc-ChhhhcCCCCcEec
Q 042597 361 SRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSSTNITGL-PQDLKALEKLRYLN 438 (693)
Q Consensus 361 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~ 438 (693)
.+++.++++++.++.+|... .++|++|++++| .+..+ |..+.++++|++|++++|+++.+ |..++++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 47999999999999888763 478999999999 55555 56799999999999999999996 66799999999999
Q ss_pred cCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccch
Q 042597 439 LDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPK 518 (693)
Q Consensus 439 l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 518 (693)
+++| .+..+|..+ . ++|++|++.+|.+... . ...+.++++|+.++++.+........
T Consensus 109 L~~n-~l~~l~~~~-~--~~L~~L~l~~n~i~~~-----------~---~~~~~~l~~L~~L~l~~n~l~~~~~~----- 165 (332)
T 2ft3_A 109 ISKN-HLVEIPPNL-P--SSLVELRIHDNRIRKV-----------P---KGVFSGLRNMNCIEMGGNPLENSGFE----- 165 (332)
T ss_dssp CCSS-CCCSCCSSC-C--TTCCEEECCSSCCCCC-----------C---SGGGSSCSSCCEEECCSCCCBGGGSC-----
T ss_pred CCCC-cCCccCccc-c--ccCCEEECCCCccCcc-----------C---HhHhCCCccCCEEECCCCccccCCCC-----
Confidence 9999 778899763 2 8999999999976543 1 12356677788787776543211100
Q ss_pred hhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch--hhhhcCCccEEEEeccccchhhhccccccccc
Q 042597 519 LELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT--WLVFVQNLKELEISFCHAVEDIIIVDKLRDIS 596 (693)
Q Consensus 519 l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 596 (693)
...+...+|+.|+++.+.....+ ...+++|++|++++|.++.++ .+..+++|+.|++++|.... ++.
T Consensus 166 -~~~~~~l~L~~L~l~~n~l~~l~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~-------- 234 (332)
T 2ft3_A 166 -PGAFDGLKLNYLRISEAKLTGIP-KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IEN-------- 234 (332)
T ss_dssp -TTSSCSCCCSCCBCCSSBCSSCC-SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCT--------
T ss_pred -cccccCCccCEEECcCCCCCccC-ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CCh--------
Confidence 00011125666666665443322 123367888888888777654 46667888888888875332 211
Q ss_pred ccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCC
Q 042597 597 EIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLN 650 (693)
Q Consensus 597 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~ 650 (693)
.....+++|+.|++.++ .+..+|..+..+++|+.|+++++ +++.+|..
T Consensus 235 ----~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 235 ----GSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp ----TGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred ----hHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChh
Confidence 23456778888888775 56677777777888888888775 57776654
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.1e-17 Score=169.88 Aligned_cols=195 Identities=22% Similarity=0.281 Sum_probs=150.8
Q ss_pred cccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhcccccc
Q 042597 333 PKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLH 412 (693)
Q Consensus 333 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 412 (693)
.....+++++.|++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..++ .+..+++|+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIK 110 (308)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCC
T ss_pred ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCC
Confidence 3445678888999999888888888888999999999998888776 788899999999988 566666 688889999
Q ss_pred EEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhc
Q 042597 413 HLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELL 492 (693)
Q Consensus 413 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (693)
+|++++|+++.+|. +..+++|++|++++| .+..++. +..+++|++|++++|.+... ..+.
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~----------------~~l~ 170 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDL----------------TPLA 170 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC----------------GGGT
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCC----------------hhhc
Confidence 99999998888874 888899999999888 6677766 67888899999888865431 1155
Q ss_pred cCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCc
Q 042597 493 GLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNL 572 (693)
Q Consensus 493 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L 572 (693)
++++|+.++++.+... .......+++|+.|++++|.++.++.+..+++|
T Consensus 171 ~l~~L~~L~l~~n~l~-------------------------------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L 219 (308)
T 1h6u_A 171 NLSKLTTLKADDNKIS-------------------------------DISPLASLPNLIEVHLKNNQISDVSPLANTSNL 219 (308)
T ss_dssp TCTTCCEEECCSSCCC-------------------------------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTC
T ss_pred CCCCCCEEECCCCccC-------------------------------cChhhcCCCCCCEEEccCCccCccccccCCCCC
Confidence 5666666665543211 111235678888999999888888778888899
Q ss_pred cEEEEecccc
Q 042597 573 KELEISFCHA 582 (693)
Q Consensus 573 ~~L~l~~~~~ 582 (693)
+.|++++|..
T Consensus 220 ~~L~l~~N~i 229 (308)
T 1h6u_A 220 FIVTLTNQTI 229 (308)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEccCCee
Confidence 9999988864
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=3.7e-17 Score=180.43 Aligned_cols=244 Identities=18% Similarity=0.141 Sum_probs=189.6
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
.+++.|++.++.+..+|.... ++|++|++++|.++.++. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 358899999999998875222 899999999999998776 4799999999999 6778886 789999999999
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
|+++.+|. .+++|++|++++| .+..+|.. +++|++|++++|.+... +. .+.+|.
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l------------~~------~~~~L~ 164 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASL------------PA------LPSELC 164 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC------------CC------CCTTCC
T ss_pred CcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCc------------CC------ccCCCC
Confidence 99999987 6799999999999 78888863 58999999999976542 11 234566
Q ss_pred eeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEe
Q 042597 499 VLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEIS 578 (693)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~ 578 (693)
.++++.+....+. . ..++|+.|+++++.....+ ..+++|+.|++++|.++.++. .+++|+.|+++
T Consensus 165 ~L~L~~N~l~~l~---~--------~~~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls 229 (622)
T 3g06_A 165 KLWAYNNQLTSLP---M--------LPSGLQELSVSDNQLASLP--TLPSELYKLWAYNNRLTSLPA--LPSGLKELIVS 229 (622)
T ss_dssp EEECCSSCCSCCC---C--------CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCC--CCTTCCEEECC
T ss_pred EEECCCCCCCCCc---c--------cCCCCcEEECCCCCCCCCC--CccchhhEEECcCCcccccCC--CCCCCCEEEcc
Confidence 6666554322211 0 1267888999887654432 246899999999999988774 35899999999
Q ss_pred ccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCCCC
Q 042597 579 FCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSSP 654 (693)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~ 654 (693)
+|.. +.+ + ..+++|+.|+++++ +++.++. .+++|+.|++++| +|+.+|......
T Consensus 230 ~N~L-~~l---------------p-~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l 283 (622)
T 3g06_A 230 GNRL-TSL---------------P-VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL 283 (622)
T ss_dssp SSCC-SCC---------------C-CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS
T ss_pred CCcc-CcC---------------C-CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc
Confidence 9853 222 2 56789999999987 6777776 6799999999987 788888764443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=7.9e-19 Score=178.94 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=158.6
Q ss_pred cccccceeeeccccchhhcc-CCCCCccceeeccccccccc-cccccC-------CCCcccEEEccCCcchhhchHhh--
Q 042597 337 EWEGAKRVSLMDNRILRLLE-IPTCSRLITLLLYENWIEEI-TDGFFQ-------PMSSLRVLALGRNFFLSKLRSGI-- 405 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~-~~~~~~-------~l~~L~~L~L~~~~~~~~~p~~~-- 405 (693)
...+++.+.+.+|.+ .+|. +... |+.|++++|.+... .+..+. .+++|++|++++|.....+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 345667777777776 4442 2222 88888888877532 122232 57888888888884444677665
Q ss_pred hccccccEEeeCCCCCCccChhhhcC-----CCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCccc
Q 042597 406 ANLVSLHHLDLSSTNITGLPQDLKAL-----EKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVL 480 (693)
Q Consensus 406 ~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 480 (693)
..+++|++|++++|+++.+|..++.+ ++|++|++++| .+..++...++++++|++|++++|.....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------- 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGE-------- 188 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHH--------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcc--------
Confidence 78888888888888888887777776 88888888888 56666644477888888888888864431
Q ss_pred ccCcchhHHhh--ccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEecc
Q 042597 481 CDDAEPLMKEL--LGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGC 558 (693)
Q Consensus 481 ~~~~~~~~~~l--~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~ 558 (693)
...+..+ .++++|+.++++.+........ .......+++|+.|++++|
T Consensus 189 ----~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 189 ----RGLISALCPLKFPTLQVLALRNAGMETPSGV--------------------------CSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp ----HHHHHHSCTTSCTTCCEEECTTSCCCCHHHH--------------------------HHHHHHTTCCCSEEECTTS
T ss_pred ----hHHHHHHHhccCCCCCEEECCCCcCcchHHH--------------------------HHHHHhcCCCCCEEECCCC
Confidence 0112222 5556666666554432111000 0011134678888888888
Q ss_pred ccccch---hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccE
Q 042597 559 KVKDLT---WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKK 635 (693)
Q Consensus 559 ~l~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 635 (693)
.++..+ ....+++|++|++++|... .++ ...+++|+.|+++++ .++.+|. ...+++|+.
T Consensus 239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip---------------~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP---------------KGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGN 300 (312)
T ss_dssp CCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC---------------SSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEE
T ss_pred cCCcccchhhhhhcCCCCEEECCCCccC-hhh---------------hhccCCceEEECCCC-CCCCChh-HhhCCCCCE
Confidence 777633 3445788888888888643 332 222278888888875 5666655 777888888
Q ss_pred EEEccC
Q 042597 636 IQVLHC 641 (693)
Q Consensus 636 L~l~~c 641 (693)
|+++++
T Consensus 301 L~L~~N 306 (312)
T 1wwl_A 301 LSLKGN 306 (312)
T ss_dssp EECTTC
T ss_pred EeccCC
Confidence 888775
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=2.1e-17 Score=176.91 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=74.8
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
++++.|++.+|.+..++.+..+++|++|++++|.++.++.. ..+|++|++++| .+..+| .++++++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence 45666666666666666666666666666666666654432 246666666666 445555 466666666666666
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
|+++++|... .+|++|++++| .+..+|. ++.+++|++|++++|.+.
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred CcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCC
Confidence 6666655322 46666677666 4556663 566777777777766544
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.7e-17 Score=165.37 Aligned_cols=209 Identities=18% Similarity=0.209 Sum_probs=126.7
Q ss_pred cccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-Hhhhccccc
Q 042597 333 PKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSL 411 (693)
Q Consensus 333 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L 411 (693)
.....+++++.+.+.++.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++| .+..++ ..++.+++|
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 334455666666666666666666666666777777666666543 2566666666766666 344333 335666666
Q ss_pred cEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHh
Q 042597 412 HHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKE 490 (693)
Q Consensus 412 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (693)
++|++++|+++.+|.. ++++++|++|++++| .+..+|...+..+++|++|++++|.+... .
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~------ 173 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSL-----------P------ 173 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------C------
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCcc-----------C------
Confidence 6666666666665544 566666666666666 45555554455666666666666543321 0
Q ss_pred hccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchh--hhh
Q 042597 491 LLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTW--LVF 568 (693)
Q Consensus 491 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~ 568 (693)
...+..+++|+.|++++|.++.++. +..
T Consensus 174 --------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (272)
T 3rfs_A 174 --------------------------------------------------EGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203 (272)
T ss_dssp --------------------------------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------------------------------------------------HHHhcCCccCCEEECCCCcCCccCHHHHhC
Confidence 0011346677778888777776553 566
Q ss_pred cCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCC
Q 042597 569 VQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPK 632 (693)
Q Consensus 569 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 632 (693)
+++|+.|++++|+. .+.+|+|+.|.+..+.....+|...+.++.
T Consensus 204 l~~L~~L~l~~N~~--------------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 204 LTSLQYIWLHDNPW--------------------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTCCEEECCSSCB--------------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CcCCCEEEccCCCc--------------------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 78888888887752 234667777777665444556655554444
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3.9e-18 Score=184.54 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=58.8
Q ss_pred ccceeEeccccccccccccccCCccEEEEeccccccc-hhhhhcCCccEEEEeccccchhhhcccccccccccccccCCc
Q 042597 527 NLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDL-TWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNF 605 (693)
Q Consensus 527 ~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (693)
+|+.|+++++.....+....+++|+.|++++|.++.+ +.+..+++|+.|++++|... .++ .....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp-------------~~l~~ 235 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIE-------------KALRF 235 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EEC-------------TTCCC
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccc-------------hhhcc
Confidence 3444444444333333334577788888888877765 34666778888888877543 222 13456
Q ss_pred CCCcceeeccccccc-cccccCCCCCCCccEEEEc
Q 042597 606 FAQLEYLRILYGRNL-KSIYPNPLPFPKLKKIQVL 639 (693)
Q Consensus 606 ~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~ 639 (693)
+++|+.|++.+++-. ..++.....+++|+.|++.
T Consensus 236 l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 677888887776433 2344445566777777664
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=6.3e-17 Score=161.82 Aligned_cols=214 Identities=21% Similarity=0.187 Sum_probs=153.8
Q ss_pred cCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch
Q 042597 325 AGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR 402 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p 402 (693)
.+.....+|.. ..++++.|++.+|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++|......+
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred cCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 34444445542 2357899999999888876 47888999999999999988888778889999999999994333344
Q ss_pred HhhhccccccEEeeCCCCCCccCh-hhhcCCCCcEeccCCcccccc--cccccccCCCccccccccccCCCccccccCcc
Q 042597 403 SGIANLVSLHHLDLSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSI--IPHKLKSGFSKLEALRLLECGSGGVIEEEGNV 479 (693)
Q Consensus 403 ~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 479 (693)
..+.++++|++|++++|.++.++. .++++++|++|++++| .+.. +|.. +..+++|++|++++|.+...
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~------- 164 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI------- 164 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEE-------
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcC-------
Confidence 678889999999999999888765 5888999999999988 5554 4655 68899999999998876653
Q ss_pred cccCcchhHHhhccCCCCc-eeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEecc
Q 042597 480 LCDDAEPLMKELLGLKHLN-VLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGC 558 (693)
Q Consensus 480 ~~~~~~~~~~~l~~L~~L~-~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~ 558 (693)
....+..+.+++.|. .++++.+ .+..+. .......+|++|++++|
T Consensus 165 ----~~~~~~~l~~L~~l~l~L~ls~n---------------------~l~~~~---------~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 165 ----YCTDLRVLHQMPLLNLSLDLSLN---------------------PMNFIQ---------PGAFKEIRLKELALDTN 210 (276)
T ss_dssp ----CGGGGHHHHTCTTCCEEEECCSS---------------------CCCEEC---------TTSSCSCCEEEEECCSS
T ss_pred ----CHHHhhhhhhccccceeeecCCC---------------------cccccC---------ccccCCCcccEEECCCC
Confidence 334555566665554 3333322 111111 01122347999999999
Q ss_pred ccccchh--hhhcCCccEEEEecccc
Q 042597 559 KVKDLTW--LVFVQNLKELEISFCHA 582 (693)
Q Consensus 559 ~l~~~~~--l~~l~~L~~L~l~~~~~ 582 (693)
.++.++. +..+++|+.|++++|+.
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ceeecCHhHhcccccccEEEccCCcc
Confidence 8887764 46688999999998863
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.5e-17 Score=168.82 Aligned_cols=210 Identities=18% Similarity=0.242 Sum_probs=158.3
Q ss_pred eeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCC
Q 042597 343 RVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNIT 422 (693)
Q Consensus 343 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~ 422 (693)
.+.+..+.+.+......+++|+.|++.+|.++.++. +..+++|++|++++| .+..++. +..+++|++|++++|.++
T Consensus 23 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred HHHhCCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCC
Confidence 344455555555556678899999999999888763 788999999999999 6777776 899999999999999999
Q ss_pred ccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEE
Q 042597 423 GLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSW 502 (693)
Q Consensus 423 ~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~ 502 (693)
.+| .+.++++|++|++++| .+..++. +..+++|++|++++|.+... ..+.++++|+.+++
T Consensus 99 ~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~l 158 (308)
T 1h6u_A 99 NVS-AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI----------------SPLAGLTNLQYLSI 158 (308)
T ss_dssp CCG-GGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC----------------GGGGGCTTCCEEEC
T ss_pred Cch-hhcCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC----------------ccccCCCCccEEEc
Confidence 986 6889999999999999 6777775 68999999999998875532 11555666666665
Q ss_pred EeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEecccc
Q 042597 503 SFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEISFCHA 582 (693)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~ 582 (693)
+.+... .......+++|+.|++++|.++.++.+..+++|++|++++|..
T Consensus 159 ~~n~l~-------------------------------~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 159 GNAQVS-------------------------------DLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CSSCCC-------------------------------CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred cCCcCC-------------------------------CChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCcc
Confidence 543211 1112356788999999999888888888899999999998864
Q ss_pred chhhhcccccccccccccccCCcCCCcceeecccccccccc
Q 042597 583 VEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSI 623 (693)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 623 (693)
.. + .....+++|+.|++.+++ +...
T Consensus 208 ~~-~--------------~~l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 208 SD-V--------------SPLANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp CB-C--------------GGGTTCTTCCEEEEEEEE-EECC
T ss_pred Cc-c--------------ccccCCCCCCEEEccCCe-eecC
Confidence 32 1 134567888888888764 4433
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=6.1e-18 Score=182.98 Aligned_cols=237 Identities=16% Similarity=0.135 Sum_probs=179.7
Q ss_pred cccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEE
Q 042597 337 EWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHL 414 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 414 (693)
.+++++.|++.+|.+..++ .+..+++|++|++++|.++..++ +..+++|++|+|++| .+..+| ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEE----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCC----CCCCcCEE
Confidence 3458999999999998875 48899999999999999988776 889999999999999 666655 34899999
Q ss_pred eeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhc-c
Q 042597 415 DLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELL-G 493 (693)
Q Consensus 415 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 493 (693)
++++|.++.+|.. .+++|++|++++| .+..+++..++++++|++|++++|.+... ....+. +
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------~~~~l~~~ 167 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV--------------NFAELAAS 167 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEE--------------EGGGGGGG
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCc--------------ChHHHhhh
Confidence 9999999997653 5789999999999 56666544478899999999999987654 122232 5
Q ss_pred CCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEecccccccc-ccccccCCccEEEEeccccccch-hhhhcCC
Q 042597 494 LKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKK-RFRSGFRSLNTVRVNGCKVKDLT-WLVFVQN 571 (693)
Q Consensus 494 L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~ 571 (693)
+++|+.++++.+......... ..++|+.|+++++..... +.+..+++|+.|++++|.++.+| .+..+++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~---------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~ 238 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKGQV---------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN 238 (487)
T ss_dssp TTTCCEEECTTSCCCEEECCC---------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTT
T ss_pred CCcccEEecCCCccccccccc---------cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCC
Confidence 677888887766533221111 126888999988876543 34577899999999999888866 4667899
Q ss_pred ccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccc
Q 042597 572 LKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGR 618 (693)
Q Consensus 572 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 618 (693)
|+.|++++|.......+ .....++.|+.|.+..+.
T Consensus 239 L~~L~l~~N~l~c~~~~------------~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLR------------DFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp CCEEECTTCCBCHHHHH------------HHHTTCHHHHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchH------------HHHHhCCCCcEEeccccc
Confidence 99999999986632211 134556777777765443
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=2.5e-16 Score=168.53 Aligned_cols=258 Identities=21% Similarity=0.200 Sum_probs=126.0
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
.+++.|++.+|.+..++.+. ++|++|++++|.++.++ . ++.+++|++|++++| .+..+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 44555555555544443322 45555555555555544 2 555555555555555 344444322 3555555555
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
|+++.+| .++++++|++|++++| .+..+|.. .++|++|++++|.... .+ .+.++++|+
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~~------------lp----~~~~l~~L~ 240 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILEE------------LP----ELQNLPFLT 240 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSS------------CC----CCTTCTTCC
T ss_pred CcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCCc------------cc----ccCCCCCCC
Confidence 5555555 4555555555555555 34444431 2355555555554331 11 245667777
Q ss_pred eeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEe
Q 042597 499 VLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEIS 578 (693)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~ 578 (693)
.++++.+....+.. . ..+|+.|+++.+.....+ ..+++|+.|++++|.++.++.+ .++|+.|+++
T Consensus 241 ~L~l~~N~l~~l~~---~--------~~~L~~L~l~~N~l~~l~--~~~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~ 305 (454)
T 1jl5_A 241 TIYADNNLLKTLPD---L--------PPSLEALNVRDNYLTDLP--ELPQSLTFLDVSENIFSGLSEL--PPNLYYLNAS 305 (454)
T ss_dssp EEECCSSCCSSCCS---C--------CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSEESCC--CTTCCEEECC
T ss_pred EEECCCCcCCcccc---c--------ccccCEEECCCCcccccC--cccCcCCEEECcCCccCcccCc--CCcCCEEECc
Confidence 77776553222110 0 145555555554332211 1234555555555554443321 1344444444
Q ss_pred ccccchhhhcc-cccccc----cccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcC
Q 042597 579 FCHAVEDIIIV-DKLRDI----SEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLP 648 (693)
Q Consensus 579 ~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp 648 (693)
+|.... ++.. ..+..+ -.+. .....+++|+.|++.++ .++.++. .+++|+.|++++| +++.+|
T Consensus 306 ~N~l~~-i~~~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N-~l~~l~ 373 (454)
T 1jl5_A 306 SNEIRS-LCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PLREFP 373 (454)
T ss_dssp SSCCSE-ECCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCC
T ss_pred CCcCCc-ccCCcCcCCEEECCCCccc-cccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC-CCCcCC
Confidence 443211 1000 000000 0000 01123688999999876 5677765 5789999999876 455544
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=5.7e-17 Score=158.34 Aligned_cols=199 Identities=15% Similarity=0.172 Sum_probs=112.9
Q ss_pred CccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccEEeeCC-CCCCccCh-hhhcCCCCcEe
Q 042597 361 SRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHHLDLSS-TNITGLPQ-DLKALEKLRYL 437 (693)
Q Consensus 361 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L 437 (693)
.+|+.|++++|.++.+++..|..+++|++|++++|..+..++. .|.++++|++|++++ |+++.+|. .+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3666777777766666665566667777777766632444443 456666666666666 66666553 35566666666
Q ss_pred ccCCcccccccccccccCCCccc---ccccccc-CCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhh
Q 042597 438 NLDHAYKLSIIPHKLKSGFSKLE---ALRLLEC-GSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 513 (693)
Q Consensus 438 ~l~~~~~l~~~p~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~ 513 (693)
++++| .+..+|. +..+++|+ +|++++| .+...
T Consensus 111 ~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i----------------------------------------- 146 (239)
T 2xwt_C 111 GIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMTSI----------------------------------------- 146 (239)
T ss_dssp EEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCCEE-----------------------------------------
T ss_pred eCCCC-CCccccc--cccccccccccEEECCCCcchhhc-----------------------------------------
Confidence 66666 4455554 44555555 5555544 22110
Q ss_pred hccchhhhhhcccccceeEeccccccccccccccCCcc-EEEEeccccccchhh-hhcCCccEEEEeccccchhhhcccc
Q 042597 514 FKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLN-TVRVNGCKVKDLTWL-VFVQNLKELEISFCHAVEDIIIVDK 591 (693)
Q Consensus 514 ~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~ 591 (693)
....+..+++|+ .|++++|+++.++.. ...++|++|++++|..++.++.
T Consensus 147 --------------------------~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~--- 197 (239)
T 2xwt_C 147 --------------------------PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK--- 197 (239)
T ss_dssp --------------------------CTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT---
T ss_pred --------------------------CcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH---
Confidence 000123455666 677776666655421 1235677777777643343322
Q ss_pred cccccccccccCCcC-CCcceeeccccccccccccCCCCCCCccEEEEccCCCC
Q 042597 592 LRDISEIIGLEHNFF-AQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPEL 644 (693)
Q Consensus 592 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L 644 (693)
.....+ ++|+.|++.++ .++.++.. .|++|+.|++.++..|
T Consensus 198 ---------~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 198 ---------DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp ---------TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred ---------HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 234445 67777777663 45655543 6777777777777653
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=1.6e-16 Score=179.03 Aligned_cols=114 Identities=26% Similarity=0.330 Sum_probs=98.2
Q ss_pred ccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhcccc
Q 042597 334 KVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVS 410 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~ 410 (693)
....+++++.|++++|.+..++. |.++++|++|+|++|.++.++++.|..+++|++|+|++| .+..+|. .|+++++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcc
Confidence 35667899999999999998864 889999999999999999999988999999999999999 6666664 5899999
Q ss_pred ccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccc
Q 042597 411 LHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIP 449 (693)
Q Consensus 411 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p 449 (693)
|++|++++|.++. +|..++++++|++|++++| .+..++
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 189 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 189 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEEC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCc-cccccc
Confidence 9999999999886 5777899999999999988 444443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=3.6e-17 Score=163.02 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=158.2
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
.++..+.+..+.+........+++|+.|++.+|.++.++. +..+++|++|++++| .+..++ .+..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCC
Confidence 4444555666666666566677888888888887776543 677888888888888 555554 677888888888888
Q ss_pred CCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCC
Q 042597 419 TNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHL 497 (693)
Q Consensus 419 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 497 (693)
|.++.+|.. +.++++|++|++++| .+..++...++.+++|++|++.+|.+... .
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------~------------- 149 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSL-----------P------------- 149 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------C-------------
T ss_pred CccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCcc-----------C-------------
Confidence 888886654 577888888888888 56666665567788888888877753321 0
Q ss_pred ceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchh--hhhcCCccEE
Q 042597 498 NVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTW--LVFVQNLKEL 575 (693)
Q Consensus 498 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L 575 (693)
...+..+++|+.|++++|.++.++. +..+++|++|
T Consensus 150 -------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 150 -------------------------------------------KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp -------------------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred -------------------------------------------HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 0011457789999999998888765 6789999999
Q ss_pred EEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCCCC
Q 042597 576 EISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSSP 654 (693)
Q Consensus 576 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~ 654 (693)
++++|.... ++. .....+++|+.|++.+++- .+.+|+|+.|+++++.--..+|......
T Consensus 187 ~L~~N~l~~-~~~------------~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 187 RLYQNQLKS-VPD------------GVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp ECCSSCCSC-CCT------------TTTTTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ECCCCcCCc-cCH------------HHHhCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence 999996433 221 2456789999999988742 2457788888887665444566554433
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.6e-16 Score=159.58 Aligned_cols=201 Identities=20% Similarity=0.166 Sum_probs=154.1
Q ss_pred cccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEE
Q 042597 335 VQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHL 414 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 414 (693)
...+++++.+.+.++.+..+|.-. .++++.|++++|.++.+++..|..+++|++|++++| .+..++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 445677888999999888887421 378999999999999988888999999999999999 67766643 789999999
Q ss_pred eeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccC
Q 042597 415 DLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGL 494 (693)
Q Consensus 415 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 494 (693)
++++|+++.+|..+.++++|++|++++| .+..+|...+.++++|++|++++|.+... . ...+..+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-----------~---~~~~~~l 147 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL-----------P---PGLLTPT 147 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC-----------C---TTTTTTC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc-----------C---hhhcccc
Confidence 9999999999988999999999999999 77788866678999999999999876543 1 1224455
Q ss_pred CCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch-hhhhcCCcc
Q 042597 495 KHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT-WLVFVQNLK 573 (693)
Q Consensus 495 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~ 573 (693)
++|+.++++.+.. +.+ ....+..+++|+.|++++|.++.+| .+..+++|+
T Consensus 148 ~~L~~L~L~~N~l---------------------~~l--------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 148 PKLEKLSLANNNL---------------------TEL--------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198 (290)
T ss_dssp TTCCEEECTTSCC---------------------SCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCS
T ss_pred cCCCEEECCCCcC---------------------Ccc--------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCC
Confidence 6666666543321 111 0112356788999999999888766 455577899
Q ss_pred EEEEecccc
Q 042597 574 ELEISFCHA 582 (693)
Q Consensus 574 ~L~l~~~~~ 582 (693)
.|+|++|+.
T Consensus 199 ~l~L~~Np~ 207 (290)
T 1p9a_G 199 FAFLHGNPW 207 (290)
T ss_dssp EEECCSCCB
T ss_pred eEEeCCCCc
Confidence 999998864
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3.2e-17 Score=167.00 Aligned_cols=221 Identities=16% Similarity=0.086 Sum_probs=150.7
Q ss_pred ccceeeeccccchhh--cc-C-------CCCCccceeecccccccccccccc--CCCCcccEEEccCCcchhhchHhhhc
Q 042597 340 GAKRVSLMDNRILRL--LE-I-------PTCSRLITLLLYENWIEEITDGFF--QPMSSLRVLALGRNFFLSKLRSGIAN 407 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~--~~-~-------~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~p~~~~~ 407 (693)
.++.|++.+|.+... +. + .++++|++|++++|.+++..+..+ ..+++|++|++++| .+...|..++.
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHH
Confidence 378888888887543 22 2 268999999999999986544434 89999999999999 66666878887
Q ss_pred c-----ccccEEeeCCCCCCccC-hhhhcCCCCcEeccCCcccccc--cccc-cccCCCccccccccccCCCccccccCc
Q 042597 408 L-----VSLHHLDLSSTNITGLP-QDLKALEKLRYLNLDHAYKLSI--IPHK-LKSGFSKLEALRLLECGSGGVIEEEGN 478 (693)
Q Consensus 408 l-----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--~p~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~ 478 (693)
+ ++|++|++++|+++.++ ..++++++|++|++++|..... +|.. .++.+++|++|++++|.+...
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~------ 216 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP------ 216 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH------
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch------
Confidence 7 99999999999999976 6799999999999999954433 2322 137899999999999976531
Q ss_pred ccccCcchhH-HhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEec
Q 042597 479 VLCDDAEPLM-KELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNG 557 (693)
Q Consensus 479 ~~~~~~~~~~-~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~ 557 (693)
+... ..+.++++|+.++++.+...... .......+++|+.|++++
T Consensus 217 ------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------------------~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 217 ------SGVCSALAAARVQLQGLDLSHNSLRDAA----------------------------GAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp ------HHHHHHHHHTTCCCSEEECTTSCCCSSC----------------------------CCSCCCCCTTCCEEECTT
T ss_pred ------HHHHHHHHhcCCCCCEEECCCCcCCccc----------------------------chhhhhhcCCCCEEECCC
Confidence 1122 22346677777776654321100 001123356777777777
Q ss_pred cccccchhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccc
Q 042597 558 CKVKDLTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYG 617 (693)
Q Consensus 558 ~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 617 (693)
|.++.+|.... ++|++|++++|.... ++ ....+++|+.|++.++
T Consensus 263 N~l~~ip~~~~-~~L~~L~Ls~N~l~~-~p--------------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 263 TGLKQVPKGLP-AKLSVLDLSYNRLDR-NP--------------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp SCCSSCCSSCC-SEEEEEECCSSCCCS-CC--------------CTTTSCEEEEEECTTC
T ss_pred CccChhhhhcc-CCceEEECCCCCCCC-Ch--------------hHhhCCCCCEEeccCC
Confidence 76666553222 677777777775322 11 2445667777777654
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.8e-16 Score=156.39 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=134.9
Q ss_pred ccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccccEEeeCC
Q 042597 340 GAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSLHHLDLSS 418 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~l~~ 418 (693)
+.+.+++.++.+..+|... .++++.|++++|.++.+++..|..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4567778888777776411 267888888888888888777888888888888888 55666544 57788888888888
Q ss_pred CCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCC
Q 042597 419 TNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHL 497 (693)
Q Consensus 419 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 497 (693)
|.++.+|.. +.++++|++|++++| .+..++...+..+++|++|++++|.+... . ...+.++++|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~---~~~~~~l~~L 159 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSL-----------P---KGVFDKLTSL 159 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------C---TTTTTTCTTC
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCcc-----------C---HhHccCCccc
Confidence 888887654 577888888888888 66777766567888888888888765432 1 1123444555
Q ss_pred ceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchh--hhhcCCccEE
Q 042597 498 NVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTW--LVFVQNLKEL 575 (693)
Q Consensus 498 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L 575 (693)
+.++++.+.... + ....+..+++|+.|++++|.++.++. +..+++|+.|
T Consensus 160 ~~L~L~~n~l~~---------------------~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 160 KELRLYNNQLKR---------------------V--------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CEEECCSSCCSC---------------------C--------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ceeEecCCcCcE---------------------e--------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 555544322110 0 01123456778888888887776653 5567788888
Q ss_pred EEeccc
Q 042597 576 EISFCH 581 (693)
Q Consensus 576 ~l~~~~ 581 (693)
+|++|+
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 887775
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1.6e-16 Score=155.21 Aligned_cols=138 Identities=13% Similarity=0.242 Sum_probs=119.4
Q ss_pred ccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccc-cccccccccCCCCcccEEEccC-Ccchhhch-H
Q 042597 329 LTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENW-IEEITDGFFQPMSSLRVLALGR-NFFLSKLR-S 403 (693)
Q Consensus 329 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~-~~~~~~~p-~ 403 (693)
...+|. ..++++.|++.+|.+..++. +..+++|++|++++|. ++.+++..|..+++|++|++++ | .+..+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence 455565 44689999999999999874 8899999999999997 9999988899999999999998 6 666665 5
Q ss_pred hhhccccccEEeeCCCCCCccChhhhcCCCCc---EeccCCcccccccccccccCCCccc-cccccccCCC
Q 042597 404 GIANLVSLHHLDLSSTNITGLPQDLKALEKLR---YLNLDHAYKLSIIPHKLKSGFSKLE-ALRLLECGSG 470 (693)
Q Consensus 404 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~~~l~~~p~~~~~~l~~L~-~L~l~~~~~~ 470 (693)
.|.++++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|...+.++++|+ +|++++|.+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 68899999999999999999996 88888888 9999998677888877678899999 9999887644
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=5.4e-16 Score=155.75 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=92.0
Q ss_pred CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcE
Q 042597 357 IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRY 436 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 436 (693)
+.++++++.+++.++.++.+|+.+ .+++++|++++|......|..+..+++|++|++++|.++.+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 566788999999999999988764 37899999999944444467799999999999999999998764 78999999
Q ss_pred eccCCcccccccccccccCCCccccccccccCCCc
Q 042597 437 LNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 437 L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
|++++| .+..+|.. +..+++|++|++++|.+..
T Consensus 82 L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~ 114 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS 114 (290)
T ss_dssp EECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC
T ss_pred EECCCC-cCCcCchh-hccCCCCCEEECCCCcCcc
Confidence 999999 77888876 6889999999999887654
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=9.1e-16 Score=153.36 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=94.6
Q ss_pred ccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCCCCCccC
Q 042597 347 MDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSSTNITGLP 425 (693)
Q Consensus 347 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp 425 (693)
.+..+..+|.- -.++|++|++++|.++.+++..|..+++|++|++++| .+..++ ..+.++++|++|++++|.++.++
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 34444555531 1257999999999999988877889999999999999 555554 46888999999999999998865
Q ss_pred -hhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 426 -QDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 426 -~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
..+.++++|++|++++| .+..++...++.+++|++|++.+|.+.
T Consensus 93 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred hhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccc
Confidence 45888999999999998 566666544788899999998887654
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.4e-15 Score=151.41 Aligned_cols=105 Identities=23% Similarity=0.252 Sum_probs=86.3
Q ss_pred ccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCCCCCccChh-hhcCCCCcEecc
Q 042597 362 RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNL 439 (693)
Q Consensus 362 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 439 (693)
..++++++++.++.+|... .++|++|++++| .+..+| ..+.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 5778999999998887753 367999999999 566555 4688999999999999999998876 478999999999
Q ss_pred CCcccccccccccccCCCccccccccccCCCc
Q 042597 440 DHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 440 ~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
++| .+..+|...+..+++|++|++.+|.+..
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCCccCe
Confidence 998 6778887667889999999998886543
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=8.6e-16 Score=154.45 Aligned_cols=171 Identities=22% Similarity=0.278 Sum_probs=100.0
Q ss_pred cccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEE
Q 042597 335 VQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHL 414 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 414 (693)
...+++++.|++.+|.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .+..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEE
Confidence 34455566666666666555555556666666666666655554 555666666666666 444444 35556666666
Q ss_pred eeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccC
Q 042597 415 DLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGL 494 (693)
Q Consensus 415 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 494 (693)
++++|+++.++ .+.++++|++|++++| .+..++. +..+++|++|++++|.+...
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------------------- 171 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI---------------------- 171 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC----------------------
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc----------------------
Confidence 66666665553 4555666666666655 4444432 45555555555555533221
Q ss_pred CCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccE
Q 042597 495 KHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKE 574 (693)
Q Consensus 495 ~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~ 574 (693)
.+...+++|+.|++++|.++.++.+..+++|+.
T Consensus 172 -----------------------------------------------~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~ 204 (291)
T 1h6t_A 172 -----------------------------------------------VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 204 (291)
T ss_dssp -----------------------------------------------GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSE
T ss_pred -----------------------------------------------hhhcCCCccCEEECCCCcCCCChhhccCCCCCE
Confidence 012345677777777777777777777777777
Q ss_pred EEEecccc
Q 042597 575 LEISFCHA 582 (693)
Q Consensus 575 L~l~~~~~ 582 (693)
|++++|..
T Consensus 205 L~l~~n~i 212 (291)
T 1h6t_A 205 LELFSQEC 212 (291)
T ss_dssp EEEEEEEE
T ss_pred EECcCCcc
Confidence 77777754
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=8.3e-17 Score=169.37 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=86.8
Q ss_pred CCCCCccceeeccccccccccc----cccCCCCcccEEEccCCcchh----hchHhh-------hccccccEEeeCCCCC
Q 042597 357 IPTCSRLITLLLYENWIEEITD----GFFQPMSSLRVLALGRNFFLS----KLRSGI-------ANLVSLHHLDLSSTNI 421 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~~~~~~----~~p~~~-------~~l~~L~~L~l~~~~i 421 (693)
+..+++|++|++++|.+....+ ..+..+++|++|+|++| .+. .+|..+ ..+++|++|++++|.+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4567778888888887765433 23567888888888876 222 334433 6778888888888887
Q ss_pred Cc-----cChhhhcCCCCcEeccCCcccccccc-ccc---ccCC---------CccccccccccCCCccccccCcccccC
Q 042597 422 TG-----LPQDLKALEKLRYLNLDHAYKLSIIP-HKL---KSGF---------SKLEALRLLECGSGGVIEEEGNVLCDD 483 (693)
Q Consensus 422 ~~-----lp~~~~~l~~L~~L~l~~~~~l~~~p-~~~---~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 483 (693)
+. +|..+.++++|++|++++|. +...+ ..+ +..+ ++|++|++++|.+... .
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~----------~ 175 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG----------S 175 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG----------G
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH----------H
Confidence 76 66677888888888888883 33221 110 2223 7888888887765421 0
Q ss_pred cchhHHhhccCCCCceeEEEeec
Q 042597 484 AEPLMKELLGLKHLNVLSWSFRS 506 (693)
Q Consensus 484 ~~~~~~~l~~L~~L~~l~~~~~~ 506 (693)
.+.....+.++++|+.++++.+.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHhCCCcCEEECcCCC
Confidence 22222345566667767666554
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=3.7e-16 Score=161.14 Aligned_cols=249 Identities=14% Similarity=0.160 Sum_probs=162.1
Q ss_pred cceeeeccccchhhccCCCC--CccceeeccccccccccccccCCCCcccEEEccCCcchhh-chHhhhccccccEEeeC
Q 042597 341 AKRVSLMDNRILRLLEIPTC--SRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSK-LRSGIANLVSLHHLDLS 417 (693)
Q Consensus 341 l~~l~l~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-~p~~~~~l~~L~~L~l~ 417 (693)
++++++.++.+.. ..+..+ .+++.|++.+|.+...++. +..+++|++|++++|..... +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4556666665442 113333 6788899999988887776 55789999999999843333 77788889999999999
Q ss_pred CCCCCc-cChhhhcCCCCcEeccCCcccccc--cccccccCCCcccccccccc-CCCccccccCcccccCcchhHHhhcc
Q 042597 418 STNITG-LPQDLKALEKLRYLNLDHAYKLSI--IPHKLKSGFSKLEALRLLEC-GSGGVIEEEGNVLCDDAEPLMKELLG 493 (693)
Q Consensus 418 ~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~--~p~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 493 (693)
+|.++. .|..++++++|++|++++|..+.. ++.. +.++++|++|++.+| ..... .....+.+
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~-------------~~~~~~~~ 192 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK-------------HVQVAVAH 192 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH-------------HHHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH-------------HHHHHHHh
Confidence 998875 677788899999999998854543 4443 577889999999888 54321 12333555
Q ss_pred CC-CCceeEEEeech-hhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccc-ccc--chhhhh
Q 042597 494 LK-HLNVLSWSFRSS-LAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCK-VKD--LTWLVF 568 (693)
Q Consensus 494 L~-~L~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~--~~~l~~ 568 (693)
++ +|+.++++.+.. .....+ ......+++|+.|++++|. ++. ++.+..
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l---------------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDL---------------------------STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHH---------------------------HHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred cccCCCEEEeCCCcccCCHHHH---------------------------HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 66 666666665421 100000 0112457889999999986 443 567778
Q ss_pred cCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCC-CCccEEEEccCCCCCCc
Q 042597 569 VQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPF-PKLKKIQVLHCPELKKL 647 (693)
Q Consensus 569 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~c~~L~~l 647 (693)
+++|++|++++|..+..... .....+++|+.|++.+| +..- ....+ .+|+.|++ +|++++..
T Consensus 246 l~~L~~L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l-~~n~l~~~ 308 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQI-NCSHFTTI 308 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEE-SCCCSCCT
T ss_pred CCCCCEeeCCCCCCCCHHHH------------HHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEE-ecccCccc
Confidence 89999999999863322110 13456889999999887 2211 11112 23455556 56677765
Q ss_pred CC
Q 042597 648 PL 649 (693)
Q Consensus 648 p~ 649 (693)
..
T Consensus 309 ~~ 310 (336)
T 2ast_B 309 AR 310 (336)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=2.9e-15 Score=165.18 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=58.5
Q ss_pred ccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEe
Q 042597 336 QEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLD 415 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 415 (693)
..+++++.|.+.++.+..++.+..+++|+.|+|++|.++.+++ +..+++|++|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 3344455555555555444444445555555555554444443 444555555555554 333333 344455555555
Q ss_pred eCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCcccccccccc
Q 042597 416 LSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 416 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 467 (693)
|++|.++.+| .+..+++|+.|++++| .+..++. +..+++|+.|++++|
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDN 163 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSS
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCC
Confidence 5555444443 3444455555555544 3333321 344444444444444
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=5.8e-14 Score=145.53 Aligned_cols=267 Identities=15% Similarity=0.137 Sum_probs=162.1
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccC------Cchhh-
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFS------DDKKW- 81 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~- 81 (693)
.+.||||+++++++.+++.. + +++.|+|++|+|||||+++++++. . .+|+++.... .....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~--~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN--Y--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH--C--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhc--C--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHH
Confidence 46799999999999999876 2 799999999999999999999874 1 6677663221 00000
Q ss_pred ------------------------------hhhchhHHHHHHHHHHcc-CcEEEEEeCcccccc---------hhhh---
Q 042597 82 ------------------------------KEKSLQDKAADISSILSR-KKFVLLLDDIWERID---------LKEL--- 118 (693)
Q Consensus 82 ------------------------------~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~---------~~~~--- 118 (693)
......+....+.+..+. +++++||||++.... +..+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 011233344445444433 489999999987543 1111
Q ss_pred ------hhhhhcccchhhhhh-----------c-C-CceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHh
Q 042597 119 ------VSLFLTTRSVDVCDQ-----------M-D-AEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLAREC 179 (693)
Q Consensus 119 ------~~iliTtr~~~~~~~-----------~-~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~ 179 (693)
.++|+|++....... . . ...+.+.+|+.+|+.+++.+.+....... -...+.+|++.+
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~t 235 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELL 235 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHH
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHh
Confidence 457788776543111 1 1 12489999999999999987654332111 256789999999
Q ss_pred CCcchHHHHHHHHHhcCCChhHHH-HHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCCCCccChH
Q 042597 180 SGLPLALKTVGRAMKSQTKVGDWQ-RAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPKDYEIPRR 258 (693)
Q Consensus 180 ~G~Plal~~~~~~l~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~~~~i~~~ 258 (693)
+|+|+++..++..+....+..++- .+.+...... ...+. .+.+ + ++ ..+..+..+|. + .++..
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~---~l~~-~-~~-~~~~~l~~la~---g-~~~~~ 299 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI------MGELE---ELRR-R-SP-RYVDILRAIAL---G-YNRWS 299 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHHHH---HHHH-H-CH-HHHHHHHHHHT---T-CCSHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH------HHHHH---HHHh-C-Ch-hHHHHHHHHHh---C-CCCHH
Confidence 999999999987654322322221 1111111000 00111 1111 2 45 78888888887 2 23444
Q ss_pred HHHHHHHhcCccCCchhhHHHHHHHHHccceeecCCCcEEe-chHHHHHH
Q 042597 259 ELIDYWISEGFVDDFNDGCEFINDLLHACLLEEEGDDHVKM-HDMIREML 307 (693)
Q Consensus 259 ~li~~w~~~g~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~-hd~~~~~~ 307 (693)
.+........--........+++.|.+.+++...+ +.|.+ |.+++.+.
T Consensus 300 ~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 300 LIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHH
Confidence 44443322110112245678899999999998753 45655 66666654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.2e-16 Score=159.50 Aligned_cols=225 Identities=14% Similarity=0.074 Sum_probs=143.2
Q ss_pred cccceeeeccccch-----hhccCCCCCccceeecccccccccccccc--CCCCcccEEEccCCcchhhch----Hhhhc
Q 042597 339 EGAKRVSLMDNRIL-----RLLEIPTCSRLITLLLYENWIEEITDGFF--QPMSSLRVLALGRNFFLSKLR----SGIAN 407 (693)
Q Consensus 339 ~~l~~l~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~p----~~~~~ 407 (693)
..++.+.+.++.+. .+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|......+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34566666665543 23334445679999999999987777666 889999999999994443332 34567
Q ss_pred cccccEEeeCCCCCCccC-hhhhcCCCCcEeccCCcccccc--cc-cccccCCCccccccccccCCCccccccCcccccC
Q 042597 408 LVSLHHLDLSSTNITGLP-QDLKALEKLRYLNLDHAYKLSI--IP-HKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDD 483 (693)
Q Consensus 408 l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--~p-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 483 (693)
+++|++|++++|.++.+| ..++++++|++|++++|..... ++ ...++.+++|++|++++|.+...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------- 212 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----------- 212 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-----------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-----------
Confidence 999999999999998865 5688999999999999943321 32 22236889999999999876431
Q ss_pred cchhHHh-hccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEecccccc
Q 042597 484 AEPLMKE-LLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKD 562 (693)
Q Consensus 484 ~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 562 (693)
+..... +.++++|+.++++.+...... + .. ......+++|++|++++|+++.
T Consensus 213 -~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-----p--------~~-------------~~~~~~~~~L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 213 -TGVCAALAAAGVQPHSLDLSHNSLRATV-----N--------PS-------------APRCMWSSALNSLNLSFAGLEQ 265 (310)
T ss_dssp -HHHHHHHHHHTCCCSSEECTTSCCCCCC-----C--------SC-------------CSSCCCCTTCCCEECCSSCCCS
T ss_pred -HHHHHHHHhcCCCCCEEECCCCCCCccc-----h--------hh-------------HHhccCcCcCCEEECCCCCCCc
Confidence 122222 345566666666544321110 0 00 0001123577777777777766
Q ss_pred chhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccc
Q 042597 563 LTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYG 617 (693)
Q Consensus 563 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 617 (693)
+|... +++|++|++++|.... ++ ....+++|+.|++.++
T Consensus 266 lp~~~-~~~L~~L~Ls~N~l~~-~~--------------~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 266 VPKGL-PAKLRVLDLSSNRLNR-AP--------------QPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCSCC-CSCCSCEECCSCCCCS-CC--------------CTTSCCCCSCEECSST
T ss_pred hhhhh-cCCCCEEECCCCcCCC-Cc--------------hhhhCCCccEEECcCC
Confidence 65322 3677777777775322 11 2345677777777664
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=7.2e-15 Score=144.48 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=96.1
Q ss_pred ccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCC
Q 042597 340 GAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSST 419 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 419 (693)
..+.+++.++.+..+|.-- .++++.|++++|.++.+++..|..+++|++|+|++|......|..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4566777777777776421 257888888888888888777888888888888888333334445778888888888888
Q ss_pred CCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 420 NITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 420 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
+++.+|.. +.++++|++|++++| .+..+|...+..+++|++|++++|.+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC
Confidence 88887654 677888888888888 667777765677888888888877544
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.9e-15 Score=151.97 Aligned_cols=184 Identities=22% Similarity=0.269 Sum_probs=114.2
Q ss_pred eeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCC
Q 042597 343 RVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNIT 422 (693)
Q Consensus 343 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~ 422 (693)
.+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCC
Confidence 334444444444444455666666666666655532 555666666666666 4444443 566666666666666666
Q ss_pred ccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEE
Q 042597 423 GLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSW 502 (693)
Q Consensus 423 ~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~ 502 (693)
.+|. +.++++|++|++++| .+..++. +..+++|++|++++|.+..
T Consensus 104 ~~~~-l~~l~~L~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~------------------------------- 148 (291)
T 1h6t_A 104 DLSS-LKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD------------------------------- 148 (291)
T ss_dssp CGGG-GTTCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-------------------------------
T ss_pred CChh-hccCCCCCEEECCCC-cCCCChh--hcCCCCCCEEEccCCcCCc-------------------------------
Confidence 6542 566666666666665 4444432 4555555555555543211
Q ss_pred EeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEecccc
Q 042597 503 SFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEISFCHA 582 (693)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~~ 582 (693)
......+++|+.|++++|.++.++.+..+++|+.|++++|..
T Consensus 149 --------------------------------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 149 --------------------------------------ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp --------------------------------------CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred --------------------------------------chhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC
Confidence 011245778999999999998888888899999999999863
Q ss_pred chhhhcccccccccccccccCCcCCCcceeeccccc
Q 042597 583 VEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGR 618 (693)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 618 (693)
++++ ....+++|+.|++.+++
T Consensus 191 -~~l~--------------~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 191 -SDLR--------------ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -CBCG--------------GGTTCTTCSEEEEEEEE
T ss_pred -CCCh--------------hhccCCCCCEEECcCCc
Confidence 2221 34668899999998763
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=1.2e-15 Score=157.44 Aligned_cols=223 Identities=19% Similarity=0.160 Sum_probs=148.2
Q ss_pred ccceeeccccccccccccccCCC--CcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCc--cChhhhcCCCCcEe
Q 042597 362 RLITLLLYENWIEEITDGFFQPM--SSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITG--LPQDLKALEKLRYL 437 (693)
Q Consensus 362 ~L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L 437 (693)
.++.++++++.+. +..+..+ +++++|++++| .+...+..+..+++|++|++++|.++. +|..+.++++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4677888877655 3335555 78888888888 555444456678888888888887765 67777888888888
Q ss_pred ccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEee-chhhHhhhhcc
Q 042597 438 NLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFR-SSLAVQKFFKY 516 (693)
Q Consensus 438 ~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~-~~~~~~~~~~~ 516 (693)
++++|......+.. +..+++|++|++++|.... .......+.++++|+.++++.+ ...... +
T Consensus 124 ~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~--- 186 (336)
T 2ast_B 124 SLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS------------EFALQTLLSSCSRLDELNLSWCFDFTEKH-V--- 186 (336)
T ss_dssp ECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC------------HHHHHHHHHHCTTCCEEECCCCTTCCHHH-H---
T ss_pred eCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC------------HHHHHHHHhcCCCCCEEcCCCCCCcChHH-H---
Confidence 88888433344544 5678888888888773221 0012223455566666666554 211100 0
Q ss_pred chhhhhhcccccceeEeccccccccccccccC-CccEEEEeccc--cc--cch-hhhhcCCccEEEEeccccchhhhccc
Q 042597 517 PKLELELENTNLEEMKIDSTEEVKKRFRSGFR-SLNTVRVNGCK--VK--DLT-WLVFVQNLKELEISFCHAVEDIIIVD 590 (693)
Q Consensus 517 ~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~-~L~~L~l~~~~--l~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 590 (693)
......++ +|++|++++|. ++ .++ .+..+++|++|++++|..+++...
T Consensus 187 ------------------------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-- 240 (336)
T 2ast_B 187 ------------------------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-- 240 (336)
T ss_dssp ------------------------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--
T ss_pred ------------------------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH--
Confidence 11124577 99999999994 43 233 456799999999999985443211
Q ss_pred ccccccccccccCCcCCCcceeeccccccccccc-cCCCCCCCccEEEEccC
Q 042597 591 KLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIY-PNPLPFPKLKKIQVLHC 641 (693)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c 641 (693)
.....+++|+.|++.+|..+.... ..+..+++|+.|++++|
T Consensus 241 ----------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 ----------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ----------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ----------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 244567999999999997443221 23567999999999998
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=7.2e-16 Score=166.48 Aligned_cols=283 Identities=16% Similarity=0.134 Sum_probs=161.8
Q ss_pred cccccceeeeccccchhh--ccC-CCCC----ccceeecccccccc----ccccccCCCCcccEEEccCCcchhhchHhh
Q 042597 337 EWEGAKRVSLMDNRILRL--LEI-PTCS----RLITLLLYENWIEE----ITDGFFQPMSSLRVLALGRNFFLSKLRSGI 405 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~--~~~-~~~~----~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~ 405 (693)
.+++++.|++.+|.+... ..+ ..++ +|++|++++|.++. ..+..+..+++|++|++++|......+..+
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 346777777777766542 111 1222 67788887777664 224456777788888887774333333333
Q ss_pred hc-----cccccEEeeCCCCCCc-----cChhhhcCCCCcEeccCCcccccccccccc-----cCCCccccccccccCCC
Q 042597 406 AN-----LVSLHHLDLSSTNITG-----LPQDLKALEKLRYLNLDHAYKLSIIPHKLK-----SGFSKLEALRLLECGSG 470 (693)
Q Consensus 406 ~~-----l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~-----~~l~~L~~L~l~~~~~~ 470 (693)
.. .++|++|++++|.++. ++..+..+++|++|++++|. +.......+ ..+++|++|++++|.+.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 22 4568888888777765 34556677788888887773 332211111 13557888888777544
Q ss_pred ccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhc--ccccceeEeccccccc------cc
Q 042597 471 GVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELE--NTNLEEMKIDSTEEVK------KR 542 (693)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~L~~L~i~~~~~~~------~~ 542 (693)
.. ........+.++++|+.++++.+...... ...+...+. .++|++|+++.+.... ..
T Consensus 213 ~~----------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~----~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 213 SD----------NCRDLCGIVASKASLRELALGSNKLGDVG----MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp TT----------HHHHHHHHHHHCTTCCEEECCSSBCHHHH----HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHhCCCccEEeccCCcCChHH----HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 31 00112334556677777777765432211 001111111 2678888888775432 12
Q ss_pred cccccCCccEEEEeccccccch--hhhh-----cCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecc
Q 042597 543 FRSGFRSLNTVRVNGCKVKDLT--WLVF-----VQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRIL 615 (693)
Q Consensus 543 ~~~~~~~L~~L~l~~~~l~~~~--~l~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 615 (693)
....+++|++|++++|.+.... .+.. .++|++|++++|........ .+. .....+++|+.|+++
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------~l~-~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS--------HFS-SVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--------HHH-HHHHHCSSCCEEECC
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH--------HHH-HHHhhCCCccEEEcc
Confidence 2345788888888888665422 2222 26888888888864332110 000 133457899999998
Q ss_pred ccccccccc-----cCCC-CCCCccEEEEccCCCCC
Q 042597 616 YGRNLKSIY-----PNPL-PFPKLKKIQVLHCPELK 645 (693)
Q Consensus 616 ~~~~l~~l~-----~~~~-~~~~L~~L~l~~c~~L~ 645 (693)
++ .+.... .... ..++|+.|++++| +++
T Consensus 350 ~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 350 NN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred CC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 87 343321 1111 2689999999998 565
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=2.8e-15 Score=165.28 Aligned_cols=193 Identities=22% Similarity=0.249 Sum_probs=151.7
Q ss_pred cccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEee
Q 042597 337 EWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDL 416 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 416 (693)
.+.++..+.+..+.+..+.....+.+|+.|++.+|.+..++. +..+++|+.|+|++| .+..++. +..+++|+.|+|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEEC
Confidence 344555566666777776677788899999999999888763 788999999999999 6666664 889999999999
Q ss_pred CCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCC
Q 042597 417 SSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKH 496 (693)
Q Consensus 417 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 496 (693)
++|.++.+| .+..+++|++|++++| .+..++. +..+++|+.|++++|.+.. +..+.++++
T Consensus 95 s~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~----------------l~~l~~l~~ 154 (605)
T 1m9s_A 95 DENKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD----------------ITVLSRLTK 154 (605)
T ss_dssp CSSCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCCCC----------------CGGGGSCTT
T ss_pred cCCCCCCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCccCC----------------chhhcccCC
Confidence 999999887 7889999999999999 6677765 6889999999999886543 134556666
Q ss_pred CceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEE
Q 042597 497 LNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELE 576 (693)
Q Consensus 497 L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~ 576 (693)
|+.|+++.+. .....++..+++|+.|+|++|.++.++.+..+++|+.|+
T Consensus 155 L~~L~Ls~N~-------------------------------l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 155 LDTLSLEDNQ-------------------------------ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 203 (605)
T ss_dssp CSEEECCSSC-------------------------------CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEE
T ss_pred CCEEECcCCc-------------------------------CCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEE
Confidence 6666665432 111222467889999999999999999999999999999
Q ss_pred Eeccccch
Q 042597 577 ISFCHAVE 584 (693)
Q Consensus 577 l~~~~~~~ 584 (693)
|++|....
T Consensus 204 L~~N~l~~ 211 (605)
T 1m9s_A 204 LFSQECLN 211 (605)
T ss_dssp CCSEEEEC
T ss_pred ccCCcCcC
Confidence 99997544
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.1e-14 Score=150.64 Aligned_cols=235 Identities=16% Similarity=0.138 Sum_probs=143.9
Q ss_pred eeeeccccchhhcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccE-EeeCCC
Q 042597 343 RVSLMDNRILRLLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHH-LDLSST 419 (693)
Q Consensus 343 ~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~-L~l~~~ 419 (693)
.+.-.+++++.+|. + .++++.|++++|.++.++++.|..+++|++|+|++|...+.+|. .|.++++|+. +.++.|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34455566666653 3 35677788888888777777777788888888887744455553 4566777654 445556
Q ss_pred CCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 420 NITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 420 ~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
+++.+|+ .+.++++|++|++++| .+..+|...+....++..|++.++.....++ ...+..+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-------------~~~f~~~~--- 153 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-------------RNSFVGLS--- 153 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-------------TTSSTTSB---
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc-------------ccchhhcc---
Confidence 7777644 4677777888877777 5666665434445555566655443222111 00111111
Q ss_pred eeEEEeechhhHhhhhccchhhhhhcccccceeEecccccccc-ccccccCCccEEEEec-cccccchh--hhhcCCccE
Q 042597 499 VLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKK-RFRSGFRSLNTVRVNG-CKVKDLTW--LVFVQNLKE 574 (693)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~-~~~~~~~~L~~L~l~~-~~l~~~~~--l~~l~~L~~ 574 (693)
..++.|.++.+..... .......+|++|.+.+ |.++.++. +..+++|++
T Consensus 154 ---------------------------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 154 ---------------------------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp ---------------------------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred ---------------------------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 1222233322221111 1112345788888875 47777763 567889999
Q ss_pred EEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEcc
Q 042597 575 LEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLH 640 (693)
Q Consensus 575 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 640 (693)
|++++|.. +. .+.+.|.+|+.|.+.++.+++.+|. ...|++|+.+++.+
T Consensus 207 LdLs~N~l-~~---------------lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 207 LDISRTRI-HS---------------LPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTSCC-CC---------------CCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhcCCCCc-Cc---------------cChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 99998853 32 2446688888888888888888874 67788899888864
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.2e-14 Score=150.35 Aligned_cols=235 Identities=18% Similarity=0.166 Sum_probs=168.2
Q ss_pred eeecCCCccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccccc-cccccccCCCCcccE-EEccCCcc
Q 042597 322 LVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIE-EITDGFFQPMSSLRV-LALGRNFF 397 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~-L~L~~~~~ 397 (693)
+...+.....+|..- ..+++.|++.+|++..++. |.++++|++|+|++|.+. .++++.|..+++|+. +.+++| .
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-N 91 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-T
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-c
Confidence 344555566666422 4689999999999999974 899999999999999874 567777899988776 555556 6
Q ss_pred hhhc-hHhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCC-ccccccccccCCCcccc
Q 042597 398 LSKL-RSGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFS-KLEALRLLECGSGGVIE 474 (693)
Q Consensus 398 ~~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~-~L~~L~l~~~~~~~~~~ 474 (693)
+..+ |..|..+++|++|++++|+++.+|.. .....++..|++.++..+..+|...+..+. .++.|++++|.+...
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-- 169 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-- 169 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--
Confidence 6665 56789999999999999999997753 556778889999887688888876566654 688999998876532
Q ss_pred ccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEE
Q 042597 475 EEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVR 554 (693)
Q Consensus 475 ~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~ 554 (693)
+.. .....+|..+.+..+ +.++.+ ....+..+++|+.|+
T Consensus 170 ----------~~~---~f~~~~L~~l~l~~~--------------------n~l~~i--------~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 170 ----------HNS---AFNGTQLDELNLSDN--------------------NNLEEL--------PNDVFHGASGPVILD 208 (350)
T ss_dssp ----------CTT---SSTTEEEEEEECTTC--------------------TTCCCC--------CTTTTTTEECCSEEE
T ss_pred ----------Chh---hccccchhHHhhccC--------------------CcccCC--------CHHHhccCcccchhh
Confidence 111 111122332322211 111111 112346788999999
Q ss_pred EeccccccchhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccc
Q 042597 555 VNGCKVKDLTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILY 616 (693)
Q Consensus 555 l~~~~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 616 (693)
+++|+++.+|. ..+.+|++|.+.++..++.++ ....|++|+.+++.+
T Consensus 209 Ls~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP--------------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 209 ISRTRIHSLPS-YGLENLKKLRARSTYNLKKLP--------------TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCC--------------CTTTCCSCCEEECSC
T ss_pred cCCCCcCccCh-hhhccchHhhhccCCCcCcCC--------------CchhCcChhhCcCCC
Confidence 99999999875 347899999988887776654 346788999998865
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=1e-15 Score=165.32 Aligned_cols=277 Identities=18% Similarity=0.112 Sum_probs=169.7
Q ss_pred ccceeeeccccchh-----hc-cCCCCCccceeeccccccccccccc-----cCCCCcccEEEccCCcchh----hchHh
Q 042597 340 GAKRVSLMDNRILR-----LL-EIPTCSRLITLLLYENWIEEITDGF-----FQPMSSLRVLALGRNFFLS----KLRSG 404 (693)
Q Consensus 340 ~l~~l~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~l~~~~~~~-----~~~l~~L~~L~L~~~~~~~----~~p~~ 404 (693)
+++.|++.+|.+.. ++ .+..+++|++|++++|.++...... ....++|++|++++|.... .++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 68888888887763 22 4778888888888888776543322 2335678888888884333 34566
Q ss_pred hhccccccEEeeCCCCCCcc-Chhhh-----cCCCCcEeccCCcccccc-----cccccccCCCccccccccccCCCccc
Q 042597 405 IANLVSLHHLDLSSTNITGL-PQDLK-----ALEKLRYLNLDHAYKLSI-----IPHKLKSGFSKLEALRLLECGSGGVI 473 (693)
Q Consensus 405 ~~~l~~L~~L~l~~~~i~~l-p~~~~-----~l~~L~~L~l~~~~~l~~-----~p~~~~~~l~~L~~L~l~~~~~~~~~ 473 (693)
+..+++|++|++++|.++.. +..+. .+++|++|++++| .+.. ++.. +..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~- 242 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGI-VASKASLRELALGSNKLGDV- 242 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHH-
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHH-HHhCCCccEEeccCCcCChH-
Confidence 77788888888888887662 22222 3568888888888 4444 3443 46778888888888764321
Q ss_pred cccCcccccCcchhH-Hhh-ccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEecccccccc-------cc
Q 042597 474 EEEGNVLCDDAEPLM-KEL-LGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVKK-------RF 543 (693)
Q Consensus 474 ~~~~~~~~~~~~~~~-~~l-~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~~-------~~ 543 (693)
....+ ..+ ..+++|+.++++.+...... . ..+...+.. ++|++|+++++..... ..
T Consensus 243 ----------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~-~---~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 243 ----------GMAELCPGLLHPSSRLRTLWIWECGITAKG-C---GDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp ----------HHHHHHHHHTSTTCCCCEEECTTSCCCHHH-H---HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcCCCCceEEECcCCCCCHHH-H---HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 10111 112 24677777777665432210 0 001111222 6788888877654311 01
Q ss_pred ccccCCccEEEEeccccccc------hhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccc
Q 042597 544 RSGFRSLNTVRVNGCKVKDL------TWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYG 617 (693)
Q Consensus 544 ~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 617 (693)
....++|++|++++|.++.. ..+..+++|++|++++|......+. .+...-....++|+.|++.+|
T Consensus 309 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--------~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR--------ELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH--------HHHHHHTSTTCCCCEEECTTS
T ss_pred ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH--------HHHHHHcCCCCceEEEECCCC
Confidence 12346899999999977653 2455678999999998854332111 000001123678999999887
Q ss_pred cccc-----ccccCCCCCCCccEEEEccCC
Q 042597 618 RNLK-----SIYPNPLPFPKLKKIQVLHCP 642 (693)
Q Consensus 618 ~~l~-----~l~~~~~~~~~L~~L~l~~c~ 642 (693)
. +. .++..+..+++|+.|++++|+
T Consensus 381 ~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 D-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp C-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred C-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3 44 455556678899999998873
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=4.5e-13 Score=139.20 Aligned_cols=263 Identities=12% Similarity=0.166 Sum_probs=158.1
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEecc-----CCchhh--
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGF-----SDDKKW-- 81 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~-- 81 (693)
.+.||||+++++.+.+ +.. +++.|+|++|+|||||+++++++. .. ..+|+++... ......
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHH
Confidence 4679999999999999 643 699999999999999999999876 22 2577776432 110000
Q ss_pred ----------------------------------------hhhchhHHHHHHHHHHccCcEEEEEeCccccc-----chh
Q 042597 82 ----------------------------------------KEKSLQDKAADISSILSRKKFVLLLDDIWERI-----DLK 116 (693)
Q Consensus 82 ----------------------------------------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~~~ 116 (693)
...........+.+..+ +++++||||++... ++.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 00112222222322211 48999999998642 221
Q ss_pred h-h---------hhhhhcccchhhhhh-----------c-C-CceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHH
Q 042597 117 E-L---------VSLFLTTRSVDVCDQ-----------M-D-AEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAE 173 (693)
Q Consensus 117 ~-~---------~~iliTtr~~~~~~~-----------~-~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 173 (693)
. + .++|+|++....... . . ...+.+.+|+.+|+.+++.+.+........ .. .
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~-~ 233 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK----DY-E 233 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC----CH-H
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC----cH-H
Confidence 1 1 467888887543211 1 1 134899999999999999886643221211 12 8
Q ss_pred HHHHHhCCcchHHHHHHHHHhcCCChhHHHH-HHHHHhhhhcccCCCcHHHHHHHH-Hhh--cCCCchhhhhHHhhhccc
Q 042597 174 TLARECSGLPLALKTVGRAMKSQTKVGDWQR-AIKKMRISASKFTGMDEKVFSRLK-FSY--DSLSTDELRSCLLYCCLY 249 (693)
Q Consensus 174 ~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~l~-~s~--~~L~~~~~k~~~l~~~~f 249 (693)
+|++.++|+|+++..++..+....+..+|-. +.+.... .+...+. ..+ ..+++ ..+..+..+|.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~- 301 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSK- 301 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTT-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHc-
Confidence 9999999999999999887654333333321 1111100 1111111 111 15666 78888888887
Q ss_pred CCCCccChHHHHHHHH-hcCccCCchhhHHHHHHHHHccceeecCCCcEE-echHHHHH
Q 042597 250 PKDYEIPRRELIDYWI-SEGFVDDFNDGCEFINDLLHACLLEEEGDDHVK-MHDMIREM 306 (693)
Q Consensus 250 ~~~~~i~~~~li~~w~-~~g~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~-~hd~~~~~ 306 (693)
+ . +...+..... ..|.-........+++.|.+.+++...+ ..|+ .|.+++++
T Consensus 302 --g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 --C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp --C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred --C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 2 1 3444432211 1231012245678899999999998754 4555 47777765
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=4.8e-15 Score=154.25 Aligned_cols=124 Identities=20% Similarity=0.134 Sum_probs=74.6
Q ss_pred eccccchhh-ccC-CCCCccceeeccccccccccc----cccCCCC-cccEEEccCCcchhhchHhhhcc-----ccccE
Q 042597 346 LMDNRILRL-LEI-PTCSRLITLLLYENWIEEITD----GFFQPMS-SLRVLALGRNFFLSKLRSGIANL-----VSLHH 413 (693)
Q Consensus 346 l~~~~~~~~-~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~L~~~~~~~~~p~~~~~l-----~~L~~ 413 (693)
+..+.+.+. +.+ ...++|++|++++|.++..++ ..+..++ +|++|+|++|......+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 444444432 233 333447777777777777665 5566676 77788887774333445555554 77778
Q ss_pred EeeCCCCCCccChh-----hhcC-CCCcEeccCCcccccccccccc----cC-CCccccccccccCCC
Q 042597 414 LDLSSTNITGLPQD-----LKAL-EKLRYLNLDHAYKLSIIPHKLK----SG-FSKLEALRLLECGSG 470 (693)
Q Consensus 414 L~l~~~~i~~lp~~-----~~~l-~~L~~L~l~~~~~l~~~p~~~~----~~-l~~L~~L~l~~~~~~ 470 (693)
|++++|.++..+.. +..+ ++|++|++++| .+...+...+ .. .++|++|++++|.+.
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 88877777764332 3344 67777777777 4444443222 22 247777777777554
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.5e-14 Score=138.75 Aligned_cols=168 Identities=22% Similarity=0.287 Sum_probs=136.5
Q ss_pred eeecCCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh
Q 042597 322 LVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS 399 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
+...+.....+|... .++++.|++.+|.+..++ .+..+++|++|++++|.++.+++..|..+++|++|++++| .+.
T Consensus 19 l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 96 (251)
T 3m19_A 19 VDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLA 96 (251)
T ss_dssp EECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred EecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-ccc
Confidence 344455555555432 368999999999998876 3889999999999999999999988999999999999999 555
Q ss_pred hch-HhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccC
Q 042597 400 KLR-SGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEG 477 (693)
Q Consensus 400 ~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 477 (693)
.+| ..+..+++|++|++++|+++.+|.. +.++++|++|++++| .+..+|...++.+++|++|++.+|.+...
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----- 170 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV----- 170 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-----
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc-----
Confidence 554 5678999999999999999998876 688999999999999 77888876678999999999999987653
Q ss_pred cccccCcchhHHhhccCCCCceeEEEeec
Q 042597 478 NVLCDDAEPLMKELLGLKHLNVLSWSFRS 506 (693)
Q Consensus 478 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 506 (693)
.. ..+.++++|+.++++.+.
T Consensus 171 ------~~---~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 171 ------PH---GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ------CT---TTTTTCTTCCEEECCSCC
T ss_pred ------CH---HHHhCCCCCCEEEeeCCc
Confidence 11 234556667777766554
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=9.5e-15 Score=144.38 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=60.9
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
.++..+.+.++.+.+++.+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|. +..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 344444455555555444445555555555555555444 1455555555555555 4444443 55555555555555
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
|+++.+|.... ++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNK 139 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSC
T ss_pred CccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCc
Confidence 55555443222 55555555555 4444432 3455555555555443
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.3e-14 Score=152.66 Aligned_cols=238 Identities=16% Similarity=0.151 Sum_probs=155.4
Q ss_pred ccccccccceeeeccccchhh-----c-cCCCCCccceeeccccccccc----ccc------ccCCCCcccEEEccCCcc
Q 042597 334 KVQEWEGAKRVSLMDNRILRL-----L-EIPTCSRLITLLLYENWIEEI----TDG------FFQPMSSLRVLALGRNFF 397 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~l~~~----~~~------~~~~l~~L~~L~L~~~~~ 397 (693)
....+++++.|++.+|.+... . .+..+++|++|++++|.+..+ |.. .+..+++|++|+|++|..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 344567899999999988663 2 377899999999999754422 222 147899999999999944
Q ss_pred hh----hchHhhhccccccEEeeCCCCCCc-----cChhhhcC---------CCCcEeccCCcccc-ccccc--ccccCC
Q 042597 398 LS----KLRSGIANLVSLHHLDLSSTNITG-----LPQDLKAL---------EKLRYLNLDHAYKL-SIIPH--KLKSGF 456 (693)
Q Consensus 398 ~~----~~p~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l---------~~L~~L~l~~~~~l-~~~p~--~~~~~l 456 (693)
.. .+|..+..+++|++|++++|.++. ++..+..+ ++|++|++++|... ..+|. ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 34 378889999999999999999875 33445555 99999999999432 23442 125678
Q ss_pred CccccccccccCCCccccccCcccccCcchhHH-hhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEecc
Q 042597 457 SKLEALRLLECGSGGVIEEEGNVLCDDAEPLMK-ELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDS 535 (693)
Q Consensus 457 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~ 535 (693)
++|++|++.+|.+... .....+. .+.++++|+.++++.+...... ...++
T Consensus 187 ~~L~~L~L~~n~l~~~----------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~------------------ 237 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPE----------GIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALA------------------ 237 (386)
T ss_dssp TTCCEEECCSSCCCHH----------HHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHH------------------
T ss_pred CCcCEEECcCCCCCHh----------HHHHHHHHHhhcCCCccEEECcCCCCCcHH-HHHHH------------------
Confidence 9999999999976521 0111233 5667778888887766532110 00000
Q ss_pred ccccccccccccCCccEEEEeccccccc------hhhh--hcCCccEEEEeccccchh----hhcccccccccccccccC
Q 042597 536 TEEVKKRFRSGFRSLNTVRVNGCKVKDL------TWLV--FVQNLKELEISFCHAVED----IIIVDKLRDISEIIGLEH 603 (693)
Q Consensus 536 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l~--~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~~ 603 (693)
..+..+++|++|+|++|.++.. ..+. .+++|++|+|++|..... ++. ...
T Consensus 238 ------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~ 299 (386)
T 2ca6_A 238 ------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VID 299 (386)
T ss_dssp ------HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHH
T ss_pred ------HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHH
Confidence 1123466777777777766543 2232 267777777777764441 221 111
Q ss_pred CcCCCcceeeccccc
Q 042597 604 NFFAQLEYLRILYGR 618 (693)
Q Consensus 604 ~~~~~L~~L~l~~~~ 618 (693)
..+++|+.|++.+++
T Consensus 300 ~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHCTTCCEEECTTSB
T ss_pred hcCCCceEEEccCCc
Confidence 346777777777653
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=147.99 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=145.1
Q ss_pred ccccceeeeccccchhhc--cC--CCCCccceeeccccccccccc----cccCCCCcccEEEccCCcchhhchHhhhccc
Q 042597 338 WEGAKRVSLMDNRILRLL--EI--PTCSRLITLLLYENWIEEITD----GFFQPMSSLRVLALGRNFFLSKLRSGIANLV 409 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~~--~~--~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~ 409 (693)
.++++.|++.+|.+.... .+ ..+++|++|++++|.++...+ ..+..+++|++|++++|......|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 356889999999887653 24 778999999999998876332 2345789999999999944444456788899
Q ss_pred cccEEeeCCCCCCc---cChh--hhcCCCCcEeccCCcccccccccc---cccCCCccccccccccCCCccccccCcccc
Q 042597 410 SLHHLDLSSTNITG---LPQD--LKALEKLRYLNLDHAYKLSIIPHK---LKSGFSKLEALRLLECGSGGVIEEEGNVLC 481 (693)
Q Consensus 410 ~L~~L~l~~~~i~~---lp~~--~~~l~~L~~L~l~~~~~l~~~p~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 481 (693)
+|++|++++|++.. ++.. ++++++|++|++++| .+..++.. +++.+++|++|++++|.+...
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~--------- 239 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRAT--------- 239 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC---------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCcc---------
Confidence 99999999998765 4322 468899999999998 56655542 346789999999999987654
Q ss_pred cCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccc
Q 042597 482 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVK 561 (693)
Q Consensus 482 ~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 561 (693)
.+..+..+..+++|+.++++.+.... + +...+++|+.|++++|.++
T Consensus 240 --~p~~~~~~~~~~~L~~L~Ls~N~l~~---------------------l-----------p~~~~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 240 --VNPSAPRCMWSSALNSLNLSFAGLEQ---------------------V-----------PKGLPAKLRVLDLSSNRLN 285 (310)
T ss_dssp --CCSCCSSCCCCTTCCCEECCSSCCCS---------------------C-----------CSCCCSCCSCEECCSCCCC
T ss_pred --chhhHHhccCcCcCCEEECCCCCCCc---------------------h-----------hhhhcCCCCEEECCCCcCC
Confidence 22333344444566666665432110 0 0112378999999999999
Q ss_pred cchhhhhcCCccEEEEecccc
Q 042597 562 DLTWLVFVQNLKELEISFCHA 582 (693)
Q Consensus 562 ~~~~l~~l~~L~~L~l~~~~~ 582 (693)
.++....+++|+.|++++|+.
T Consensus 286 ~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 286 RAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCTTSCCCCSCEECSSTTT
T ss_pred CCchhhhCCCccEEECcCCCC
Confidence 887788899999999999874
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.3e-13 Score=129.85 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=109.7
Q ss_pred ccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEe
Q 042597 336 QEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLD 415 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 415 (693)
..+++++.|++.+|.+..++.+..+++|++|++++|.++..+ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 456778888888888877777777888888888888666554 377788888888888844444666778888888888
Q ss_pred eCCCCCCc-cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccC
Q 042597 416 LSSTNITG-LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGL 494 (693)
Q Consensus 416 l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 494 (693)
+++|.++. .|..++++++|++|++++|..+..+|. +..+++|++|++++|.+... ..+.++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------------~~l~~l 180 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------------RGIEDF 180 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------------TTGGGC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------------HHhccC
Confidence 88888876 566778888888888888854777763 67788888888888765431 145556
Q ss_pred CCCceeEEEeec
Q 042597 495 KHLNVLSWSFRS 506 (693)
Q Consensus 495 ~~L~~l~~~~~~ 506 (693)
++|+.++++.+.
T Consensus 181 ~~L~~L~l~~N~ 192 (197)
T 4ezg_A 181 PKLNQLYAFSQT 192 (197)
T ss_dssp SSCCEEEECBC-
T ss_pred CCCCEEEeeCcc
Confidence 666666666544
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=6.7e-14 Score=131.90 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=115.2
Q ss_pred cCCCccCCcccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh
Q 042597 325 AGIKLTEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG 404 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~ 404 (693)
.+.....++....+++++.|++.+|.+..++.+..+++|++|++++|.++...+..+..+++|++|++++|......|..
T Consensus 52 ~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 131 (197)
T 4ezg_A 52 ANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131 (197)
T ss_dssp ESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH
T ss_pred cCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH
Confidence 34444555677788899999999998888888888999999999999888766666888999999999999555567788
Q ss_pred hhccccccEEeeCCCC-CCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 405 IANLVSLHHLDLSSTN-ITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 405 ~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
++.+++|++|++++|. ++.+| .+.++++|++|++++| .+..++. +..+++|++|++.+|.+.
T Consensus 132 l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 8899999999999997 88887 6888999999999998 6677763 678999999999888654
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=3e-14 Score=158.93 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=148.6
Q ss_pred cccccceeeeccccchh-----hcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCc--------------
Q 042597 337 EWEGAKRVSLMDNRILR-----LLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNF-------------- 396 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~-------------- 396 (693)
.+++++.|.+.++.+.. ++. +.++++|++|++.+|.+..++ ..+..+++|+.|+++...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 45677888887777652 222 346778888888877766654 235555666666655321
Q ss_pred ------------chhhchHhhhccccccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCccccc
Q 042597 397 ------------FLSKLRSGIANLVSLHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEAL 462 (693)
Q Consensus 397 ------------~~~~~p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L 462 (693)
....+|..+..+++|++|++++|.++. ++..+.++++|++|+++++..-..++. +...+++|++|
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HHHHCTTCCEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-HHHhCCCCCEE
Confidence 233444445555666666666665443 222345566666666653311111221 12445566666
Q ss_pred cccc----------cCCCccccccCcccccCcchhHHh-hccCCCCceeEEEeechhhHhhhhccchhhhhhccccccee
Q 042597 463 RLLE----------CGSGGVIEEEGNVLCDDAEPLMKE-LLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEM 531 (693)
Q Consensus 463 ~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L 531 (693)
++.+ |.... ...+.. ..++++|+.+++..+.... ..+..+.. ..++|++|
T Consensus 348 ~L~~g~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~L~~L~l~~~~l~~-~~~~~l~~-----~~~~L~~L 408 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVS-------------QRGLIALAQGCQELEYMAVYVSDITN-ESLESIGT-----YLKNLCDF 408 (592)
T ss_dssp EEECCCCSSTTSSTTCCCC-------------HHHHHHHHHHCTTCSEEEEEESCCCH-HHHHHHHH-----HCCSCCEE
T ss_pred EeecCccccccccccCccC-------------HHHHHHHHhhCccCeEEEeecCCccH-HHHHHHHh-----hCCCCcEE
Confidence 6652 22111 111111 2335555555553322111 10000000 01577888
Q ss_pred Eecccc---cccc--------ccccccCCccEEEEeccc--ccc--chhhh-hcCCccEEEEeccccchhhhcccccccc
Q 042597 532 KIDSTE---EVKK--------RFRSGFRSLNTVRVNGCK--VKD--LTWLV-FVQNLKELEISFCHAVEDIIIVDKLRDI 595 (693)
Q Consensus 532 ~i~~~~---~~~~--------~~~~~~~~L~~L~l~~~~--l~~--~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 595 (693)
++..+. .... .....+++|++|+++.|. ++. +..+. .+++|+.|+|++|........
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------- 481 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM------- 481 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH-------
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH-------
Confidence 886322 1111 113458889999997652 333 23333 378899999998864332111
Q ss_pred cccccccCCcCCCcceeeccccccccc--cccCCCCCCCccEEEEccCCCCCC
Q 042597 596 SEIIGLEHNFFAQLEYLRILYGRNLKS--IYPNPLPFPKLKKIQVLHCPELKK 646 (693)
Q Consensus 596 ~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~L~~ 646 (693)
.....+++|+.|++++|+ +.. ++.....+++|+.|++++|+ ++.
T Consensus 482 -----~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 482 -----EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp -----HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred -----HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 134568999999999997 432 33334568999999999997 543
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.4e-13 Score=150.04 Aligned_cols=181 Identities=18% Similarity=0.103 Sum_probs=96.7
Q ss_pred ccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCC
Q 042597 362 RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDH 441 (693)
Q Consensus 362 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 441 (693)
+|+.|++++|.++.+|... +++|++|+|++| .+..+| ..+++|++|++++|+++.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 4555555555555554432 245566666655 444555 335556666666666555554 433 566666665
Q ss_pred cccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhh
Q 042597 442 AYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLEL 521 (693)
Q Consensus 442 ~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~ 521 (693)
| .+..+|. .+++|+.|++++|.+... +. .+++|+.++++.+..
T Consensus 130 N-~l~~lp~----~l~~L~~L~Ls~N~l~~l------------p~------~l~~L~~L~Ls~N~L-------------- 172 (571)
T 3cvr_A 130 N-QLTMLPE----LPALLEYINADNNQLTML------------PE------LPTSLEVLSVRNNQL-------------- 172 (571)
T ss_dssp S-CCSCCCC----CCTTCCEEECCSSCCSCC------------CC------CCTTCCEEECCSSCC--------------
T ss_pred C-cCCCCCC----cCccccEEeCCCCccCcC------------CC------cCCCcCEEECCCCCC--------------
Confidence 5 4444553 355566666655543321 00 123333333332210
Q ss_pred hhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCc-------cEEEEeccccchhhhccccccc
Q 042597 522 ELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNL-------KELEISFCHAVEDIIIVDKLRD 594 (693)
Q Consensus 522 ~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~ 594 (693)
...+.+. ++|+.|++++|+++.+|.+. ++| +.|+|++|... .++.
T Consensus 173 -----------------~~lp~l~--~~L~~L~Ls~N~L~~lp~~~--~~L~~~~~~L~~L~Ls~N~l~-~lp~------ 224 (571)
T 3cvr_A 173 -----------------TFLPELP--ESLEALDVSTNLLESLPAVP--VRNHHSEETEIFFRCRENRIT-HIPE------ 224 (571)
T ss_dssp -----------------SCCCCCC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC-CCCG------
T ss_pred -----------------CCcchhh--CCCCEEECcCCCCCchhhHH--HhhhcccccceEEecCCCcce-ecCH------
Confidence 0000111 67888999999888877622 366 99999988643 3332
Q ss_pred ccccccccCCcCCCcceeeccccccccccc
Q 042597 595 ISEIIGLEHNFFAQLEYLRILYGRNLKSIY 624 (693)
Q Consensus 595 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 624 (693)
....+++|+.|++.+++--..++
T Consensus 225 -------~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 225 -------NILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -------GGGGSCTTEEEECCSSSCCHHHH
T ss_pred -------HHhcCCCCCEEEeeCCcCCCcCH
Confidence 33458889999998875333333
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=1.6e-13 Score=132.65 Aligned_cols=142 Identities=29% Similarity=0.351 Sum_probs=102.5
Q ss_pred CCCccCCcccccccccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH
Q 042597 326 GIKLTEAPKVQEWEGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS 403 (693)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~ 403 (693)
+.....+|. ...++++.|++.+|.+..+. .+..+++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.
T Consensus 28 ~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 105 (229)
T 3e6j_A 28 SKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS 105 (229)
T ss_dssp TSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccCh
Confidence 333444443 22367788888888877764 2677788888888888887777777777888888888888 5555543
Q ss_pred -hhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 404 -GIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 404 -~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
.+..+++|++|++++|+++.+|..+.++++|++|++++| .+..+|...+..+++|+.|++.+|.+.
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 357788888888888888888877888888888888887 666777655677788888888777544
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=3.8e-13 Score=128.01 Aligned_cols=122 Identities=26% Similarity=0.374 Sum_probs=65.2
Q ss_pred eeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccEEeeCCCCC
Q 042597 343 RVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHHLDLSSTNI 421 (693)
Q Consensus 343 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~l~~~~i 421 (693)
.+...++.+..++. .-.++|++|++++|.++.+++..|..+++|++|++++| .+..+|. .+..+++|++|++++|++
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 34444444444432 12345666666666666665555556666666666666 3444433 245566666666666666
Q ss_pred CccChh-hhcCCCCcEeccCCcccccccccccccCCCcccccccccc
Q 042597 422 TGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 422 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 467 (693)
+.+|.. +.++++|++|++++| .+..+|...+..+++|++|++.+|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC
Confidence 655443 455566666666555 444444443445555555555544
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=3e-13 Score=129.74 Aligned_cols=128 Identities=26% Similarity=0.307 Sum_probs=65.0
Q ss_pred cccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccccEEe
Q 042597 339 EGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~ 415 (693)
++++.|++.+|.+..++ .+..+++|+.|++++|.++.+.+..|..+++|++|+|++| .+..+|.. |..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 34555555555555544 2445555555555555555554444555555555555555 34444432 34455555555
Q ss_pred eCCCCCCcc-ChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 416 LSSTNITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 416 l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
|++|+++.+ |..+.++++|++|++++| .+..++...+..+++|++|++.+|.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 555555554 233455555555555555 4444444334455555555555443
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=1.4e-13 Score=153.51 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=150.4
Q ss_pred ccccceeeeccccchhh-----c-cCCCCCccceeecccccccccc----ccccCCCCcccEEEccCCcchhhchHhhhc
Q 042597 338 WEGAKRVSLMDNRILRL-----L-EIPTCSRLITLLLYENWIEEIT----DGFFQPMSSLRVLALGRNFFLSKLRSGIAN 407 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~ 407 (693)
+++++.|++.+|.+.+. + -...+++|++|++++|.++.+. +..+..+++|++|++++| .+..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhh
Confidence 45555555555543221 1 1224555566666555544211 222344556666666665 44445555555
Q ss_pred cccccEEeeCCCCC----CccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccC
Q 042597 408 LVSLHHLDLSSTNI----TGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDD 483 (693)
Q Consensus 408 l~~L~~L~l~~~~i----~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 483 (693)
+++|++|+++.+.. ...+..+..+++|+.|+++++ ....+|.. +..+++|++|++++|.....
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~----------- 308 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETE----------- 308 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHH-----------
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHH-----------
Confidence 66666666653211 113334555566666666554 33445543 46677888888887763221
Q ss_pred cchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEecc----------ccccc---c-ccccccC
Q 042597 484 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDS----------TEEVK---K-RFRSGFR 548 (693)
Q Consensus 484 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~----------~~~~~---~-~~~~~~~ 548 (693)
.....+.++++|+.+++..+ ... ..+.. .... ++|++|++.. +.... . .....++
T Consensus 309 --~~~~~~~~~~~L~~L~L~~~-~~~-~~l~~------~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 309 --DHCTLIQKCPNLEVLETRNV-IGD-RGLEV------LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp --HHHHHHTTCTTCCEEEEEGG-GHH-HHHHH------HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred --HHHHHHHhCcCCCEEeccCc-cCH-HHHHH------HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 12233567778888877722 111 11111 0112 6789999984 43322 1 1234589
Q ss_pred CccEEEEecccccc--chhhhh-cCCccEEEEecc---ccchhhhcccccccccccccccCCcCCCcceeecccccc-cc
Q 042597 549 SLNTVRVNGCKVKD--LTWLVF-VQNLKELEISFC---HAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRN-LK 621 (693)
Q Consensus 549 ~L~~L~l~~~~l~~--~~~l~~-l~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~ 621 (693)
+|++|++..+.++. +..+.. +++|++|++++| ..+++.+... . +. .....+++|+.|++.+|.+ +.
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~---~---~~-~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN---G---VR-SLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH---H---HH-HHHHHCTTCCEEEEECCGGGCC
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH---H---HH-HHHHhCCCCCEEEEecCCCCcc
Confidence 99999997776665 334444 899999999853 3343321100 0 00 1244589999999988764 22
Q ss_pred c--cccCCCCCCCccEEEEccCCCCC
Q 042597 622 S--IYPNPLPFPKLKKIQVLHCPELK 645 (693)
Q Consensus 622 ~--l~~~~~~~~~L~~L~l~~c~~L~ 645 (693)
. +..-...+++|+.|++++|. +.
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~-l~ 476 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVG-ES 476 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCC-SS
T ss_pred HHHHHHHHHhCccceEeeccCCC-CC
Confidence 1 11112348999999998875 43
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=3.7e-13 Score=132.91 Aligned_cols=153 Identities=24% Similarity=0.285 Sum_probs=129.1
Q ss_pred ccCCcccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhcc
Q 042597 329 LTEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANL 408 (693)
Q Consensus 329 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l 408 (693)
...++....+++++.|++.+|.+..++.+..+++|+.|++++|.++.+++ +..+++|++|++++| .+..+|. +..
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~-~~~- 105 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNG-IPS- 105 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTT-CCC-
T ss_pred cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCc-ccc-
Confidence 33445567789999999999999999888999999999999999999887 899999999999999 7777774 334
Q ss_pred ccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhH
Q 042597 409 VSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLM 488 (693)
Q Consensus 409 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 488 (693)
++|++|++++|+++.+| .+.++++|++|++++| .+..++. +..+++|++|++++|.+...
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~---------------- 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT---------------- 165 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC----------------
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch----------------
Confidence 99999999999999986 6999999999999999 6788874 78999999999999976531
Q ss_pred HhhccCCCCceeEEEeec
Q 042597 489 KELLGLKHLNVLSWSFRS 506 (693)
Q Consensus 489 ~~l~~L~~L~~l~~~~~~ 506 (693)
..+.++++|+.++++.+.
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 345667777777777654
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=6.4e-14 Score=145.73 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=112.0
Q ss_pred cccceeeeccccchhhc------cCCCCC-ccceeeccccccccccccccCCC-----CcccEEEccCCcchhhchHhhh
Q 042597 339 EGAKRVSLMDNRILRLL------EIPTCS-RLITLLLYENWIEEITDGFFQPM-----SSLRVLALGRNFFLSKLRSGIA 406 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~------~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~L~~~~~~~~~p~~~~ 406 (693)
.+++.|++.+|.+.... .+..++ +|++|++++|.++...+..+..+ ++|++|+|++|......+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 45999999999987764 356777 89999999999998776656654 9999999999954444555444
Q ss_pred ----cc-ccccEEeeCCCCCCccChh-----hhc-CCCCcEeccCCccccc-----ccccccccCCC-ccccccccccCC
Q 042597 407 ----NL-VSLHHLDLSSTNITGLPQD-----LKA-LEKLRYLNLDHAYKLS-----IIPHKLKSGFS-KLEALRLLECGS 469 (693)
Q Consensus 407 ----~l-~~L~~L~l~~~~i~~lp~~-----~~~-l~~L~~L~l~~~~~l~-----~~p~~~~~~l~-~L~~L~l~~~~~ 469 (693)
.+ ++|++|++++|.++..+.. +.. .++|++|++++| .+. .++.. +..++ +|++|++++|.+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 44 8999999999999886543 333 369999999999 444 33333 34555 999999999976
Q ss_pred CccccccCcccccCcchhH-HhhccC-CCCceeEEEeec
Q 042597 470 GGVIEEEGNVLCDDAEPLM-KELLGL-KHLNVLSWSFRS 506 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~-~~l~~L-~~L~~l~~~~~~ 506 (693)
... ....+ ..+... ++|+.++++.+.
T Consensus 180 ~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 180 ASK-----------NCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp GGS-----------CHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred chh-----------hHHHHHHHHHhCCCCCCEEECCCCC
Confidence 543 22222 234455 477777776654
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=2.6e-13 Score=130.10 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=120.3
Q ss_pred ceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNI 421 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i 421 (693)
+.++..++.+..+|.-- .++|+.|++++|.++.+++..|..+++|++|+|++|......|..|.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45677777777776421 27899999999999999998899999999999999944444478899999999999999999
Q ss_pred CccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCcee
Q 042597 422 TGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVL 500 (693)
Q Consensus 422 ~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l 500 (693)
+.+|.. +.++++|++|++++| .+..++...+..+++|++|++.+|.+... .. ..+..+++|+.+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~---~~~~~l~~L~~L 157 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI-----------AK---GTFSPLRAIQTM 157 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-----------CT---TTTTTCTTCCEE
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE-----------CH---HHHhCCCCCCEE
Confidence 999877 588999999999999 67777666688999999999999987654 22 234456666666
Q ss_pred EEEeec
Q 042597 501 SWSFRS 506 (693)
Q Consensus 501 ~~~~~~ 506 (693)
+++.+.
T Consensus 158 ~L~~N~ 163 (220)
T 2v9t_B 158 HLAQNP 163 (220)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 665543
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=5.2e-13 Score=128.02 Aligned_cols=127 Identities=23% Similarity=0.272 Sum_probs=66.5
Q ss_pred ccceeeeccccchhhcc---CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEe
Q 042597 340 GAKRVSLMDNRILRLLE---IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLD 415 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~ 415 (693)
.++.|++.+|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++| .+..+ |..+..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence 44555555555555421 445555555555555555555544555555555555555 33322 23355555555555
Q ss_pred eCCCCCCcc-ChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 416 LSSTNITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 416 l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
+++|+++.+ |..+.++++|++|++++| .+..+++..+..+++|+.|++.+|.
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 555555554 334555555555555555 3444433234555555555555554
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.42 E-value=1.6e-13 Score=153.15 Aligned_cols=85 Identities=12% Similarity=0.161 Sum_probs=51.6
Q ss_pred cccCCccEEEEecccccc--chhhhh-cCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccc
Q 042597 545 SGFRSLNTVRVNGCKVKD--LTWLVF-VQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLK 621 (693)
Q Consensus 545 ~~~~~L~~L~l~~~~l~~--~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 621 (693)
..+++|++|++++ .+++ +..+.. +++|+.|+|++|........ .....+++|+.|++.+|+. .
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------------~l~~~~~~L~~L~L~~n~~-~ 494 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------------HVLSGCDSLRKLEIRDCPF-G 494 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH------------HHHHHCTTCCEEEEESCSC-C
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH------------HHHhcCCCcCEEECcCCCC-c
Confidence 4456666776655 2332 233333 67777777777764222111 1124588999999998864 3
Q ss_pred cc--ccCCCCCCCccEEEEccCCC
Q 042597 622 SI--YPNPLPFPKLKKIQVLHCPE 643 (693)
Q Consensus 622 ~l--~~~~~~~~~L~~L~l~~c~~ 643 (693)
.. ......+++|+.|++++|+.
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCC
Confidence 22 12334589999999999975
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=4.5e-13 Score=145.99 Aligned_cols=188 Identities=19% Similarity=0.172 Sum_probs=136.3
Q ss_pred ccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCC
Q 042597 340 GAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSST 419 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 419 (693)
+++.|++.+|.+..++.-. +++|++|++++|.++.+| ..+++|++|++++| .+..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 7888999999888876522 478999999999988777 34788999999999 6666886 655 8999999999
Q ss_pred CCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCce
Q 042597 420 NITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNV 499 (693)
Q Consensus 420 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 499 (693)
+++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.+... +. +. ++|+.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~l------------p~----l~--~~L~~ 184 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTFL------------PE----LP--ESLEA 184 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC------------CC----CC--TTCCE
T ss_pred cCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCCc------------ch----hh--CCCCE
Confidence 9999887 6899999999998 6777775 578899999998876542 11 11 56666
Q ss_pred eEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchh-hhhcCCccEEEEe
Q 042597 500 LSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTW-LVFVQNLKELEIS 578 (693)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-l~~l~~L~~L~l~ 578 (693)
++++.+....+.. +. .+ .....+.|+.|++++|.++.+|. +..+++|+.|+|+
T Consensus 185 L~Ls~N~L~~lp~---~~--------~~---------------L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 185 LDVSTNLLESLPA---VP--------VR---------------NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp EECCSSCCSSCCC---CC-------------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred EECcCCCCCchhh---HH--------Hh---------------hhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 6665443211110 00 00 01223445999999999998874 7779999999999
Q ss_pred ccccchhhhc
Q 042597 579 FCHAVEDIII 588 (693)
Q Consensus 579 ~~~~~~~~~~ 588 (693)
+|.....++.
T Consensus 239 ~N~l~~~~p~ 248 (571)
T 3cvr_A 239 DNPLSSRIRE 248 (571)
T ss_dssp SSSCCHHHHH
T ss_pred CCcCCCcCHH
Confidence 9987665543
No 117
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=4.2e-12 Score=134.63 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=157.0
Q ss_pred CcccchHHHHHHHHHHh-hh--cC--CCeeEEEE--EcCCCCcHHHHHHHHHhhhccc--cCCCC-EEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCI-TD--QE--KNRRIIGL--YGTGGVGKTTILTQVNNNFCHQ--QHNFD-VVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l-~~--~~--~~~~vv~i--~G~~GiGKTtla~~~~~~~~~~--~~~f~-~~~wv~~~~~~~~~ 79 (693)
+.++||+++++++.+++ .. .+ .....+.| +|++|+||||+|+++++..... ...+. .++|+++.......
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999998 53 12 24467777 9999999999999999886211 01122 35677652221110
Q ss_pred hh--------------hhhchhHHHHHHHHHHc--cCcEEEEEeCcccccc--------hhhh-------h--h------
Q 042597 80 KW--------------KEKSLQDKAADISSILS--RKKFVLLLDDIWERID--------LKEL-------V--S------ 120 (693)
Q Consensus 80 ~~--------------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~--------~~~~-------~--~------ 120 (693)
.. ......+....+.+.+. +++++|||||++.... +..+ . .
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 00 01122344455555554 6799999999986431 2211 1 1
Q ss_pred hhhcccchhhhh-----------hcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC------Ccc
Q 042597 121 LFLTTRSVDVCD-----------QMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECS------GLP 183 (693)
Q Consensus 121 iliTtr~~~~~~-----------~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~------G~P 183 (693)
+|+||+...+.. .... .+.+++++.+++.+++.+.+...... ...-.+.+..|++.++ |.|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~-~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGF-KLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCC-eeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcH
Confidence 666777554321 1121 28999999999999998765432211 1122678899999999 999
Q ss_pred hHHHHHHHHHh-----cC---CChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccC--CCC
Q 042597 184 LALKTVGRAMK-----SQ---TKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYP--KDY 253 (693)
Q Consensus 184 lal~~~~~~l~-----~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~--~~~ 253 (693)
..+..++.... .. .+.+.+...+..... ...+.-++..||+ ..+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 76655544321 11 122333333322110 1223345678887 7888887777643 233
Q ss_pred ccChHHHHHHHH--h---cCccC-CchhhHHHHHHHHHccceeec
Q 042597 254 EIPRRELIDYWI--S---EGFVD-DFNDGCEFINDLLHACLLEEE 292 (693)
Q Consensus 254 ~i~~~~li~~w~--~---~g~~~-~~~~~~~~l~~L~~~~ll~~~ 292 (693)
.+...++...+. + .|.-. .......+++.|.+.+++...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 455555544332 1 12211 124566789999999999763
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.2e-12 Score=124.56 Aligned_cols=141 Identities=23% Similarity=0.316 Sum_probs=120.0
Q ss_pred CccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-h
Q 042597 328 KLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-G 404 (693)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~ 404 (693)
....+|. ...++++.|++.+|.+..++. +..+++|++|++.+|.++.+++..|..+++|++|++++| .+..+|. .
T Consensus 18 ~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 95 (208)
T 2o6s_A 18 GRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGV 95 (208)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhH
Confidence 3344442 234689999999999998875 789999999999999999999988899999999999999 5666654 4
Q ss_pred hhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCc
Q 042597 405 IANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 405 ~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
+..+++|++|++++|+++.+|.. +.++++|++|++++| .+..+|...+..+++|++|++.+|....
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec
Confidence 78999999999999999998776 789999999999999 6778887767899999999999986543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.8e-13 Score=121.95 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=108.6
Q ss_pred cccceeeeccccch--hhcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEe
Q 042597 339 EGAKRVSLMDNRIL--RLLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 415 (693)
++++.|++.+|.+. .++. +..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67899999999987 6765 57889999999999998887 4488899999999999944334787788899999999
Q ss_pred eCCCCCCccC--hhhhcCCCCcEeccCCccccccccc---ccccCCCccccccccccCCCc
Q 042597 416 LSSTNITGLP--QDLKALEKLRYLNLDHAYKLSIIPH---KLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 416 l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~---~~~~~l~~L~~L~l~~~~~~~ 471 (693)
+++|.++.+| ..+.++++|++|++++| .+..+|. ..+..+++|++|++.+|....
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999976 67889999999999999 6677776 347889999999999886543
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=7e-13 Score=137.68 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=91.6
Q ss_pred ceeeeccccchhhccCCCCCccceeeccccccccccccccC-CCCcccEEEccCCcchhhch-HhhhccccccEEeeCCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQ-PMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSST 419 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 419 (693)
+.++..++.+..+|. .-...++.|++++|.++.+++..+. .+++|++|+|++| .+..++ ..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 456667777776664 1234578888888888888777676 7888888888888 555444 45778888888888888
Q ss_pred CCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCc
Q 042597 420 NITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 420 ~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
+++.+|. .+.++++|++|++++| .+..++...+.++++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCe
Confidence 8888665 3677888888888887 5566654446778888888888776443
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=7.2e-13 Score=127.07 Aligned_cols=148 Identities=18% Similarity=0.270 Sum_probs=117.8
Q ss_pred ceeeeccccchhhccCCCCCccceeecccccccccc-ccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEIT-DGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSST 419 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 419 (693)
+.+++.++.+..+|. .-...++.|++++|.++.++ ...|..+++|++|+|++| .+..++ ..|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 578888888888774 22456789999999999985 456899999999999999 565555 47999999999999999
Q ss_pred CCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 420 NITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 420 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
.++.+|.. +.++++|++|++++| .+..++...+..+++|++|++.+|.+... .+. .+..+++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~---~~~~l~~L~ 156 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV-----------APG---AFDTLHSLS 156 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB-----------CTT---TTTTCTTCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE-----------CHH---HhcCCCCCC
Confidence 99998765 889999999999999 66777555578999999999999987654 222 344556666
Q ss_pred eeEEEeec
Q 042597 499 VLSWSFRS 506 (693)
Q Consensus 499 ~l~~~~~~ 506 (693)
.++++.+.
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 66665543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=6.3e-13 Score=119.00 Aligned_cols=124 Identities=23% Similarity=0.232 Sum_probs=97.8
Q ss_pred cccceeeeccccch--hhcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEe
Q 042597 339 EGAKRVSLMDNRIL--RLLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 415 (693)
++++.|++.+|.+. .++. +..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67888888888887 5654 57888899999998888877 4478888899999988843333777777888899999
Q ss_pred eCCCCCCccC--hhhhcCCCCcEeccCCccccccccc---ccccCCCcccccccc
Q 042597 416 LSSTNITGLP--QDLKALEKLRYLNLDHAYKLSIIPH---KLKSGFSKLEALRLL 465 (693)
Q Consensus 416 l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~p~---~~~~~l~~L~~L~l~ 465 (693)
+++|.++.+| ..++++++|++|++++| .+..+|. ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9998888865 67888888999998888 6666665 346778888888765
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=5.6e-13 Score=123.02 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=64.3
Q ss_pred ccccceeeeccccchhhccCCCCC-ccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccccEEe
Q 042597 338 WEGAKRVSLMDNRILRLLEIPTCS-RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSLHHLD 415 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~ 415 (693)
..+++.|++.+|.+..++.+..+. +|++|++++|.++.+ ..+..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 345555555555555554444433 555555555555554 22555555555555555 34444433 25555555555
Q ss_pred eCCCCCCccCh--hhhcCCCCcEeccCCcccccccccc---cccCCCcccccccccc
Q 042597 416 LSSTNITGLPQ--DLKALEKLRYLNLDHAYKLSIIPHK---LKSGFSKLEALRLLEC 467 (693)
Q Consensus 416 l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~~p~~---~~~~l~~L~~L~l~~~ 467 (693)
+++|.++.+|. .+.++++|++|++++| .+..+|.. .+..+++|+.|++..|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 55555555554 4555555555555555 33444432 2344555555555444
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.37 E-value=5.2e-13 Score=149.02 Aligned_cols=130 Identities=16% Similarity=0.077 Sum_probs=81.8
Q ss_pred cccccceeeeccccchhh--ccCC-CCCccceeecccc-ccccc-cccccCCCCcccEEEccCCcchhh----chHhhhc
Q 042597 337 EWEGAKRVSLMDNRILRL--LEIP-TCSRLITLLLYEN-WIEEI-TDGFFQPMSSLRVLALGRNFFLSK----LRSGIAN 407 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~--~~~~-~~~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~----~p~~~~~ 407 (693)
.+++++.|++.++.+... ..+. .+++|++|++.+| .++.. .+..+..+++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456788888888765542 2232 5778888888887 44432 223345688888888888842222 2222335
Q ss_pred cccccEEeeCCCC--CCc--cChhhhcCCCCcEeccCCcccccccccccccCCCcccccccccc
Q 042597 408 LVSLHHLDLSSTN--ITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 408 l~~L~~L~l~~~~--i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 467 (693)
+++|++|++++|. +.. ++.-+.++++|++|++++|..+..+|.. +..+++|++|.+..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 6788888888886 221 3333456788888888887555555543 456677777765444
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=1.9e-12 Score=125.04 Aligned_cols=149 Identities=23% Similarity=0.247 Sum_probs=121.7
Q ss_pred ccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccEEeeCC
Q 042597 340 GAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHHLDLSS 418 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~l~~ 418 (693)
..+.++..++.+..+|. .-.++|++|++++|.++.+++..|..+++|++|+|++| .+..+|. .+..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 34567778888888775 22389999999999999998888999999999999999 6677764 478999999999999
Q ss_pred CCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCC
Q 042597 419 TNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHL 497 (693)
Q Consensus 419 ~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 497 (693)
|+++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+... .. ..+.++++|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-----------~~---~~~~~l~~L 161 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI-----------PH---GAFDRLSSL 161 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC-----------CT---TTTTTCTTC
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc-----------CH---HHHhCCCCC
Confidence 999998766 688999999999999 77899987 58999999999999977643 11 235566677
Q ss_pred ceeEEEeec
Q 042597 498 NVLSWSFRS 506 (693)
Q Consensus 498 ~~l~~~~~~ 506 (693)
+.+++..+.
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 777665543
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2.5e-12 Score=133.51 Aligned_cols=147 Identities=25% Similarity=0.301 Sum_probs=122.4
Q ss_pred eecCCCccCCcccccccccceeeeccccchhhcc--CC-CCCccceeeccccccccccccccCCCCcccEEEccCCcchh
Q 042597 323 VRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IP-TCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS 399 (693)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 399 (693)
...+.....+|. .....++.|++++|.+..++. +. .+++|+.|++++|.++.+++..|..+++|++|+|++| .+.
T Consensus 24 ~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~ 101 (361)
T 2xot_A 24 SCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLH 101 (361)
T ss_dssp ECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred EeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCC
Confidence 334444555554 234678999999999998864 55 8999999999999999999888999999999999999 566
Q ss_pred hch-HhhhccccccEEeeCCCCCCcc-ChhhhcCCCCcEeccCCcccccccccccc---cCCCccccccccccCCCcc
Q 042597 400 KLR-SGIANLVSLHHLDLSSTNITGL-PQDLKALEKLRYLNLDHAYKLSIIPHKLK---SGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 400 ~~p-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~~p~~~~---~~l~~L~~L~l~~~~~~~~ 472 (693)
.++ ..|.++++|++|+|++|+++.+ |..+.++++|++|++++| .+..+|..++ ..+++|++|++++|.+...
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 665 4689999999999999999996 567999999999999999 7888998765 5799999999999987653
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1.9e-10 Score=120.49 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=159.3
Q ss_pred CcccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc----CC-CCEEEEEEEeccC-Cchhh
Q 042597 10 HTVVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ----HN-FDVVIWAAVIGFS-DDKKW 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~----~~-f~~~~wv~~~~~~-~~~~~ 81 (693)
+.++||+++++++.+++.. .....+.+.|+|++|+||||+|+.+++...... +. ....+|+++.... .....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999988865 234567999999999999999999999762210 11 3456777764332 10000
Q ss_pred ---------------hhhchhHHHHHHHHHHccCcEEEEEeCcccccc---hh----hh------hhhhhcccchhh---
Q 042597 82 ---------------KEKSLQDKAADISSILSRKKFVLLLDDIWERID---LK----EL------VSLFLTTRSVDV--- 130 (693)
Q Consensus 82 ---------------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~----~~------~~iliTtr~~~~--- 130 (693)
...........+.+.++.++.++||||++.... .+ .+ ..+|+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 011124445666777777667999999986531 22 22 457777776421
Q ss_pred -----hhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC---Ccch-HHHHHHHHHh-----cC
Q 042597 131 -----CDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECS---GLPL-ALKTVGRAMK-----SQ 196 (693)
Q Consensus 131 -----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~Pl-al~~~~~~l~-----~~ 196 (693)
...+.. .+.+++++.++..+++.+++.... ....--.+..+.+++.++ |.|. ++..+-.+.. ..
T Consensus 180 l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 180 MEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp SCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 222222 599999999999999998865311 111112467788888888 9887 4444433321 12
Q ss_pred CChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCCC-CccChHHHHHHHHhcCccC-Cch
Q 042597 197 TKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPKD-YEIPRRELIDYWISEGFVD-DFN 274 (693)
Q Consensus 197 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~~-~~i~~~~li~~w~~~g~~~-~~~ 274 (693)
-+.+.+..++..... ..+..++..+++ ..+..+..++. ... -.+. .......-..|... ...
T Consensus 258 i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 258 IRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp CCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTTCCCCCHH
T ss_pred cCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcCCCCCCHH
Confidence 456667666654431 235556778886 56665555554 111 0110 11111111223111 225
Q ss_pred hhHHHHHHHHHccceee
Q 042597 275 DGCEFINDLLHACLLEE 291 (693)
Q Consensus 275 ~~~~~l~~L~~~~ll~~ 291 (693)
....++..|.+.+++..
T Consensus 322 ~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 322 RFSDIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 66778999999999987
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.3e-12 Score=118.86 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=110.6
Q ss_pred cccchhhccCCCCCccceeeccccccccccccccCCC-CcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccCh
Q 042597 348 DNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPM-SSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQ 426 (693)
Q Consensus 348 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~ 426 (693)
.+.+...+.+.++.+|+.|++++|.++.++ . +..+ ++|++|++++| .+..+ ..++.+++|++|++++|.++.+|+
T Consensus 6 ~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 6 AELIEQAAQYTNAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp HHHHHTSCEEECTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred HHHHHHHHhcCCcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCc
Confidence 334445566788999999999999999874 3 4444 49999999999 66666 578999999999999999999987
Q ss_pred hh-hcCCCCcEeccCCccccccccc-ccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEe
Q 042597 427 DL-KALEKLRYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSF 504 (693)
Q Consensus 427 ~~-~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~ 504 (693)
.+ ..+++|++|++++| .+..+|. ..+..+++|++|++.+|.+... .......+..+++|+.++++.
T Consensus 82 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-----------~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 82 GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK-----------KHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS-----------TTHHHHHHHHCTTCSEETTEE
T ss_pred chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc-----------HhHHHHHHHHCCccceeCCCc
Confidence 75 89999999999999 6788886 2368899999999999976532 111112345566666666665
Q ss_pred ech
Q 042597 505 RSS 507 (693)
Q Consensus 505 ~~~ 507 (693)
+..
T Consensus 150 n~~ 152 (176)
T 1a9n_A 150 VKL 152 (176)
T ss_dssp CCH
T ss_pred CCH
Confidence 543
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.29 E-value=1.5e-10 Score=121.48 Aligned_cols=267 Identities=15% Similarity=0.110 Sum_probs=157.3
Q ss_pred CcccchHHHHHHHHHHhhhc--CCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc---CCCCEEEEEEEeccCCchhh---
Q 042597 10 HTVVGQELLLYRVWRCITDQ--EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ---HNFDVVIWAAVIGFSDDKKW--- 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~--- 81 (693)
+.++||+++++++..++... ....+.+.|+|++|+||||+|+.+++...... +.-...+|+++.........
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 67999999999999998652 35567899999999999999999998762110 11224566665332221100
Q ss_pred -----------hhhchhHHHHHHHHHH--ccCcEEEEEeCcccccch----hhh---------------hhhhhcccchh
Q 042597 82 -----------KEKSLQDKAADISSIL--SRKKFVLLLDDIWERIDL----KEL---------------VSLFLTTRSVD 129 (693)
Q Consensus 82 -----------~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~----~~~---------------~~iliTtr~~~ 129 (693)
......+....+.+.+ .++++++||||++..... +.+ ..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 0111334445555555 346889999999865321 211 14566666542
Q ss_pred --------hhhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC---CcchHHH-HHHHHHh---
Q 042597 130 --------VCDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECS---GLPLALK-TVGRAMK--- 194 (693)
Q Consensus 130 --------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~Plal~-~~~~~l~--- 194 (693)
+..++....+.+++++.++..+++.+.+.... ....--.+..+.++++++ |.|..+. .+..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF-NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB-CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 23333334589999999999999998865311 011112456778888888 9994333 3322221
Q ss_pred --c--CCChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhc-ccCCCCccChHHHHHHH----H
Q 042597 195 --S--QTKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCC-LYPKDYEIPRRELIDYW----I 265 (693)
Q Consensus 195 --~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~-~f~~~~~i~~~~li~~w----~ 265 (693)
+ .-+.+.+..++..... ..+.-++..++. +.+..+...+ .+.....+...++.+.. -
T Consensus 258 ~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 258 RRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 1345566665554321 234556778887 5555555444 33222234444333322 2
Q ss_pred hcCccC-CchhhHHHHHHHHHccceee
Q 042597 266 SEGFVD-DFNDGCEFINDLLHACLLEE 291 (693)
Q Consensus 266 ~~g~~~-~~~~~~~~l~~L~~~~ll~~ 291 (693)
..|... ....+..+++.|...|++..
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 324 TLGLEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 223211 12567788999999999987
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=1.2e-11 Score=114.23 Aligned_cols=128 Identities=20% Similarity=0.293 Sum_probs=106.6
Q ss_pred cceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccEEeeCCC
Q 042597 341 AKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHHLDLSST 419 (693)
Q Consensus 341 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~l~~~ 419 (693)
.+.+.+.++.+..++. ...++|+.|++++|.++.+++..|..+++|++|++++| .+..+|. .+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 4567777777777763 23478999999999999998888899999999999999 6666654 4689999999999999
Q ss_pred CCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCc
Q 042597 420 NITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 420 ~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
+++.+|.. +.++++|++|++++| .+..+|...+..+++|++|++.+|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99998765 688999999999999 7778888767889999999999887654
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=8.7e-12 Score=116.68 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=103.4
Q ss_pred ceeeeccccchhhccCCCCCccceeecccccccccccc-ccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDG-FFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 420 (693)
+.+++.++.+..+|.. -..+|++|++++|.++.+++. .|..+++|++|+|++|......|..|.++++|++|++++|+
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 6778888888887751 123899999999999988874 58899999999999994444447789999999999999999
Q ss_pred CCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCc
Q 042597 421 ITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 421 i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
++.++.. +.++++|++|++++| .+..+++..+..+++|++|++.+|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9997654 888999999999999 5555544447889999999999887653
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=4.4e-12 Score=113.46 Aligned_cols=109 Identities=21% Similarity=0.293 Sum_probs=93.4
Q ss_pred CCCCccceeeccccccc--cccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCc-cChhhhcCCCC
Q 042597 358 PTCSRLITLLLYENWIE--EITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITG-LPQDLKALEKL 434 (693)
Q Consensus 358 ~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 434 (693)
...++|+.|++++|.++ .++. .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++++++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34588999999999998 4544 5899999999999999 66666 678999999999999999999 78778889999
Q ss_pred cEeccCCcccccccc--cccccCCCccccccccccCCCc
Q 042597 435 RYLNLDHAYKLSIIP--HKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 435 ~~L~l~~~~~l~~~p--~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
++|++++| .+..+| .. ++.+++|++|++++|.+..
T Consensus 91 ~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccc
Confidence 99999999 667764 44 7899999999999997654
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=7.3e-12 Score=114.55 Aligned_cols=134 Identities=25% Similarity=0.223 Sum_probs=106.8
Q ss_pred CCCCccceeeccccccc--cccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCc-cChhhhcCCCC
Q 042597 358 PTCSRLITLLLYENWIE--EITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITG-LPQDLKALEKL 434 (693)
Q Consensus 358 ~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 434 (693)
...++|+.|++++|.++ .++. .+..+++|++|++++| .+..+ ..+..+++|++|++++|.++. +|..+.++++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34588999999999998 5554 4789999999999999 56666 678999999999999999999 77778889999
Q ss_pred cEeccCCccccccccc-ccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeec
Q 042597 435 RYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRS 506 (693)
Q Consensus 435 ~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 506 (693)
++|++++| .+..+|. ..+..+++|++|++.+|.+... .......+..+++|+.+++..+.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-----------~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL-----------NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS-----------TTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch-----------HHHHHHHHHhCccCcEecCCCCC
Confidence 99999999 7777762 3378999999999999976543 11112356667777777766553
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=3.8e-12 Score=139.45 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=93.2
Q ss_pred ccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCC
Q 042597 362 RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDH 441 (693)
Q Consensus 362 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 441 (693)
.|++|++++|.++.+|. ++.+++|++|+|++| .+..+|..++++++|++|+|++|+++.+| .++++++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 58999999999998764 889999999999999 67799999999999999999999999998 899999999999999
Q ss_pred ccccccc--ccccccCCCccccccccccCCCcc
Q 042597 442 AYKLSII--PHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 442 ~~~l~~~--p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
| .+..+ |.. ++.+++|+.|++++|.+...
T Consensus 518 N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 N-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp S-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGS
T ss_pred C-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCC
Confidence 9 66776 665 78999999999999976653
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=114.54 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=94.2
Q ss_pred ceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 420 (693)
+.+++.++.+..+|.- -.++|++|++++|.++.++. .|..+++|++|+|++| .+..++ ..|.++++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4566777777776642 23578888888888887774 4788888888888888 454444 568888888888888888
Q ss_pred CCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCC
Q 042597 421 ITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGS 469 (693)
Q Consensus 421 i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 469 (693)
++.+|+ .+.++++|++|++++| .+..+|...+..+++|+.|++.+|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 888765 4788888888888888 67777776677888888888887754
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=8.1e-10 Score=115.79 Aligned_cols=267 Identities=13% Similarity=0.116 Sum_probs=154.4
Q ss_pred CCcccchHHHHHHHHHHhhhc--CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC-CCEEEEEEEeccCCchh-----
Q 042597 9 DHTVVGQELLLYRVWRCITDQ--EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN-FDVVIWAAVIGFSDDKK----- 80 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~----- 80 (693)
++.|+||+++++.+.+++... ......+.|+|++|+||||+|+.+++.. ..... -..++|+++........
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 367999999999999998752 3556789999999999999999999976 21111 23566776532211000
Q ss_pred ---------hhhhchhHHHHHHHHHHc--cCcEEEEEeCccccc------chhhh-----------hhhhhcccchhh--
Q 042597 81 ---------WKEKSLQDKAADISSILS--RKKFVLLLDDIWERI------DLKEL-----------VSLFLTTRSVDV-- 130 (693)
Q Consensus 81 ---------~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~-----------~~iliTtr~~~~-- 130 (693)
.......+....+.+.+. +++.++||||++... .+..+ ..+|+||+....
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 001123344445555554 458999999997642 12222 234666665432
Q ss_pred ------hhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhC---CcchHHHHHHH-HHh-----c
Q 042597 131 ------CDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECS---GLPLALKTVGR-AMK-----S 195 (693)
Q Consensus 131 ------~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~Plal~~~~~-~l~-----~ 195 (693)
...+....+.+++++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+..+.. +.. .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 1222223599999999999999998764321 111223567788888887 99984433333 221 1
Q ss_pred --CCChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCC-C-CccChHHHHHHH----Hhc
Q 042597 196 --QTKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPK-D-YEIPRRELIDYW----ISE 267 (693)
Q Consensus 196 --~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~-~-~~i~~~~li~~w----~~~ 267 (693)
.-+.+.+..++.... ...+.-.+.+++. ..+..+..++.+.+ + ..+...++...+ -..
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 134555555544332 1234556677876 55555555543211 1 123333332221 112
Q ss_pred CccC-CchhhHHHHHHHHHccceee
Q 042597 268 GFVD-DFNDGCEFINDLLHACLLEE 291 (693)
Q Consensus 268 g~~~-~~~~~~~~l~~L~~~~ll~~ 291 (693)
|... .......+++.|.+.+++..
T Consensus 323 g~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 323 GVEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3111 11456678999999999976
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=1e-11 Score=140.40 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=41.8
Q ss_pred cccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCc
Q 042597 379 GFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSK 458 (693)
Q Consensus 379 ~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~ 458 (693)
..+..+++|++|+|++| .+..+|..+.++++|++|+|++|.++.+|..++++++|++|+|++| .+..+|.. +++|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTT
T ss_pred hhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCC
Confidence 33444555555555555 3344444444555555555555555555555555555555555555 33444444 344555
Q ss_pred cccccccccC
Q 042597 459 LEALRLLECG 468 (693)
Q Consensus 459 L~~L~l~~~~ 468 (693)
|++|++++|.
T Consensus 295 L~~L~L~~N~ 304 (727)
T 4b8c_D 295 LKYFYFFDNM 304 (727)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCC
Confidence 5555555544
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=1.5e-11 Score=139.01 Aligned_cols=112 Identities=24% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcE
Q 042597 357 IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRY 436 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 436 (693)
+..+..|+.|+|++|.+..++.. +..+++|++|+|++| .+..+|..|+++++|++|+|++|.|+.+|..+++|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 45566666666666666655555 335666666666666 4446666666666666666666666666666666666666
Q ss_pred eccCCcccccccccccccCCCccccccccccCCCcc
Q 042597 437 LNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 437 L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
|++++| .+..+|.. ++++++|++|++++|.+...
T Consensus 298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred EECCCC-CCCccChh-hhcCCCccEEeCCCCccCCC
Confidence 666666 55566665 56666666666666665543
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.18 E-value=1.7e-10 Score=110.76 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
..++|+++.++.+.+++.. .+.+.+.|+|++|+|||++|+.+++.. .....-...+.++..... .....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~ 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDER--------GIDVV 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT--TCCCCEEEECSTTSSHHHHHHHHHHHH-HGGGGGGGEEEEETTCTT--------CHHHH
T ss_pred HHHcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHH-hccccccceEEecccccc--------ChHHH
Confidence 5799999999999999977 334459999999999999999999875 111111112222221111 11222
Q ss_pred HHHHHHHH------ccCcEEEEEeCccccc--chhhh----------hhhhhcccchhh-hhh--cCCceEEeccCCchH
Q 042597 90 AADISSIL------SRKKFVLLLDDIWERI--DLKEL----------VSLFLTTRSVDV-CDQ--MDAEKLEVYSLANDE 148 (693)
Q Consensus 90 ~~~l~~~l------~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr~~~~-~~~--~~~~~~~l~~l~~~e 148 (693)
...+.... .+++.++|+||++... ....+ .++|+||+.... ... .....+.+.+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 86 RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEA 165 (226)
T ss_dssp HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHH
Confidence 22233332 2578899999998753 22222 456777665432 111 122258999999999
Q ss_pred HHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 149 AWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
..+++.+.+.......+ .+..+.+++.++|.|..+..+...
T Consensus 166 ~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 166 MKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp HHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999988765432222 567889999999999865554443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=5.1e-11 Score=111.39 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=101.8
Q ss_pred cceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccCh-hhhcCCCCcEeccCC
Q 042597 363 LITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQ-DLKALEKLRYLNLDH 441 (693)
Q Consensus 363 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~ 441 (693)
-++++++++.++.+|... .++|++|++++| .+..+|..+.++++|++|++++|.++.++. .+.++++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 367899999999988763 368999999999 778899899999999999999999999865 589999999999999
Q ss_pred cccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEee
Q 042597 442 AYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFR 505 (693)
Q Consensus 442 ~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 505 (693)
| .+..++...+..+++|++|++.+|.+... ... .+.++++|+.++++.+
T Consensus 88 N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-----------~~~---~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVV-----------PEG---AFNDLSALSHLAIGAN 136 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSCCCBC-----------CTT---TTTTCTTCCEEECCSS
T ss_pred C-ccCEeCHHHhCCCCCCCEEECCCCCCCee-----------Chh---hhhcCccccEEEeCCC
Confidence 9 77888876689999999999999987653 112 2445566666666544
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=3.4e-10 Score=110.40 Aligned_cols=170 Identities=17% Similarity=0.212 Sum_probs=109.8
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC-------------------CEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF-------------------DVVIWA 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f-------------------~~~~wv 70 (693)
+.++||+..++.+..++... ...+.+.|+|++|+||||+|+.+++.. .....+ ...+.+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 56999999999999999763 223588999999999999999999876 221111 001111
Q ss_pred EEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCccccc--chhhh----------hhhhhcccchh-hhh
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERI--DLKEL----------VSLFLTTRSVD-VCD 132 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr~~~-~~~ 132 (693)
.. . . .........+.+.+ .+++.++|+||++... .+..+ ..+|+||+... +..
T Consensus 101 ~~--~------~-~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 101 DA--A------S-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp ET--T------C-GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cC--c------c-cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 00 0 0 01111122233322 3467999999998642 23333 44666665543 211
Q ss_pred h--cCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 042597 133 Q--MDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAM 193 (693)
Q Consensus 133 ~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l 193 (693)
. .....+.+++++.++..+++.+.+....... -.+..+.|++.++|.|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1223499999999999999998876543222 25778999999999999888776644
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=4.1e-11 Score=131.29 Aligned_cols=120 Identities=20% Similarity=0.231 Sum_probs=105.4
Q ss_pred ccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCC
Q 042597 340 GAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSST 419 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 419 (693)
.++.|++.+|.+..++.+..+++|+.|++++|.++.+|.. ++.+++|++|+|++| .+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 5889999999999999999999999999999999988764 899999999999999 777788 8999999999999999
Q ss_pred CCCcc--ChhhhcCCCCcEeccCCccccccccccc---ccCCCcccccc
Q 042597 420 NITGL--PQDLKALEKLRYLNLDHAYKLSIIPHKL---KSGFSKLEALR 463 (693)
Q Consensus 420 ~i~~l--p~~~~~l~~L~~L~l~~~~~l~~~p~~~---~~~l~~L~~L~ 463 (693)
+++.+ |..++++++|++|++++| .+..+|+.. +..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 99997 889999999999999999 666666531 23367777764
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.15 E-value=3.5e-09 Score=111.04 Aligned_cols=265 Identities=13% Similarity=0.081 Sum_probs=153.8
Q ss_pred CcccchHHHHHHHHHHhhhc--CCC--eeEEEEEcCCCCcHHHHHHHHHhhhccccCC-CCEEEEEEEeccCCchhh---
Q 042597 10 HTVVGQELLLYRVWRCITDQ--EKN--RRIIGLYGTGGVGKTTILTQVNNNFCHQQHN-FDVVIWAAVIGFSDDKKW--- 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~--~~~--~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~--- 81 (693)
+.++||+++++++..++... +.. .+.+.|+|++|+||||+|+.+++.. ... -..++|+++.........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 67999999999999998762 222 3489999999999999999999886 322 234566665322210000
Q ss_pred -----------hhhchhHHHHHHHHHHc--cCcEEEEEeCccccc--chhhh--------------hhhhhcccchhhh-
Q 042597 82 -----------KEKSLQDKAADISSILS--RKKFVLLLDDIWERI--DLKEL--------------VSLFLTTRSVDVC- 131 (693)
Q Consensus 82 -----------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~--~~~~~--------------~~iliTtr~~~~~- 131 (693)
...........+.+.+. +++.++||||++... ....+ ..+|++|+.....
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 01122333444444443 568899999998752 22222 1355666554322
Q ss_pred -------hhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHh---------CCcchHHHHHHHHHhc
Q 042597 132 -------DQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLAREC---------SGLPLALKTVGRAMKS 195 (693)
Q Consensus 132 -------~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~---------~G~Plal~~~~~~l~~ 195 (693)
..+....+.+++++.++..+++.+.+..... ...--.+..+.+++.+ +|.|..+..+......
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 2233335999999999999999887654211 1122267889999999 7988655544432211
Q ss_pred -----C---CChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccC---CCCccChHHHHHHH
Q 042597 196 -----Q---TKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYP---KDYEIPRRELIDYW 264 (693)
Q Consensus 196 -----~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~---~~~~i~~~~li~~w 264 (693)
. -+.+....+...... ..+.-.+..|+. +.+.++..++.+. .+..+....+...+
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 1 223333333332211 111223455665 5666666555443 12134445554444
Q ss_pred Hh----cCccC-CchhhHHHHHHHHHccceeec
Q 042597 265 IS----EGFVD-DFNDGCEFINDLLHACLLEEE 292 (693)
Q Consensus 265 ~~----~g~~~-~~~~~~~~l~~L~~~~ll~~~ 292 (693)
.. .|... .......++..|.+++++...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 319 KIVCEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 33 23221 225566789999999999873
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=1.9e-10 Score=107.53 Aligned_cols=120 Identities=25% Similarity=0.288 Sum_probs=100.3
Q ss_pred ecCCCccCCcccccccccceeeeccccchhhcc---CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhh
Q 042597 324 RAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLE---IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSK 400 (693)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 400 (693)
..+.....+|.. ...+++.|.+.+|.+..++. +..+++|++|++++|.++.+.+..|..+++|++|+|++| .+..
T Consensus 15 ~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 92 (192)
T 1w8a_A 15 CTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKE 92 (192)
T ss_dssp CTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCE
T ss_pred cCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCc
Confidence 344445555542 23489999999999998864 789999999999999999998888999999999999999 5555
Q ss_pred c-hHhhhccccccEEeeCCCCCCcc-ChhhhcCCCCcEeccCCcccc
Q 042597 401 L-RSGIANLVSLHHLDLSSTNITGL-PQDLKALEKLRYLNLDHAYKL 445 (693)
Q Consensus 401 ~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l 445 (693)
+ |..+..+++|++|++++|+++.+ |..+..+++|++|++++|...
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 4 45588999999999999999985 667999999999999999543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=3e-12 Score=120.67 Aligned_cols=109 Identities=29% Similarity=0.323 Sum_probs=83.0
Q ss_pred CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcE
Q 042597 357 IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRY 436 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 436 (693)
+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|..+..+++|++|++++|+++.+| .+.++++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 566778888888888887765 4777888888888888 66677777777788888888888888876 6778888888
Q ss_pred eccCCccccccccc-ccccCCCccccccccccCCC
Q 042597 437 LNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 437 L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~ 470 (693)
|++++| .+..++. ..+..+++|++|++.+|.+.
T Consensus 120 L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 120 LYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 888887 5665553 22577888888888877543
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=3.8e-10 Score=103.98 Aligned_cols=117 Identities=26% Similarity=0.364 Sum_probs=98.9
Q ss_pred CCCccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH
Q 042597 326 GIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS 403 (693)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~ 403 (693)
+.....+|. ...++++.|.+.+|.+..++. +..+++|++|++++|.++.+++..|..+++|++|++++| .+..+|.
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp SSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCH
Confidence 334444442 334789999999999988864 688999999999999999999988899999999999999 6666654
Q ss_pred -hhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCccc
Q 042597 404 -GIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYK 444 (693)
Q Consensus 404 -~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~ 444 (693)
.+..+++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 478999999999999999998877 57899999999999943
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=5.6e-10 Score=114.15 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=169.8
Q ss_pred cccccceeeeccccc-hhhccCCC-CCccceeeccccccc--cccccccCCCCcccEEEccCCcchhhchHhhhc-----
Q 042597 337 EWEGAKRVSLMDNRI-LRLLEIPT-CSRLITLLLYENWIE--EITDGFFQPMSSLRVLALGRNFFLSKLRSGIAN----- 407 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~----- 407 (693)
.+.+++.|.+.++-. ..+..+.. +++|++|+|++|.+. ..... .++.++.+.+..+ .+. +..|.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~-~I~--~~aF~~~~~~~ 96 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN-FVP--AYAFSNVVNGV 96 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT-EEC--TTTTEEEETTE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc-ccC--HHHhccccccc
Confidence 467788888876521 12222333 889999999999887 33332 3333566666655 222 234667
Q ss_pred ---cccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccC
Q 042597 408 ---LVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDD 483 (693)
Q Consensus 408 ---l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 483 (693)
+.+|+.|++.. +++.++.. +.++++|+.|++.+| .+..++...+.++.++..+...........
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~---------- 164 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK---------- 164 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS----------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc----------
Confidence 89999999999 88888765 888999999999988 666777777777777776655432100000
Q ss_pred cchhHHhhccCCCCc-eeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccc-c-ccccccCCccEEEEecccc
Q 042597 484 AEPLMKELLGLKHLN-VLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVK-K-RFRSGFRSLNTVRVNGCKV 560 (693)
Q Consensus 484 ~~~~~~~l~~L~~L~-~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~-~-~~~~~~~~L~~L~l~~~~l 560 (693)
....-..+.+...|+ .+.+..........+. ..+...++..+.+.+.-... . .....+++|++|+|.+|++
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~------~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK------AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCCHHHHHHH------TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred ccccccccccccccceeEEecCCCcHHHHHhh------cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc
Confidence 000001122333333 2222211111000000 01112444555444321110 1 1112478999999999988
Q ss_pred ccchh--hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcc-eeeccccccccccc-cCCCCCCCccEE
Q 042597 561 KDLTW--LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLE-YLRILYGRNLKSIY-PNPLPFPKLKKI 636 (693)
Q Consensus 561 ~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~~~~~~~~L~~L 636 (693)
+.++. +..|++|+.|+|.++ ++.+.. ....++++|+ .+.+.+ +++.+. ..+..+++|+.|
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n--i~~I~~------------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN--LKTIGQ------------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECT------------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred ceecHhhhhCCCCCCEEECCcc--cceehH------------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence 88774 566899999999886 444433 3566778888 888865 677765 345678999999
Q ss_pred EEccCCCCCCcCCCCCCCCCcceEE
Q 042597 637 QVLHCPELKKLPLNSSSPKERRVVI 661 (693)
Q Consensus 637 ~l~~c~~L~~lp~~~~~~~~~l~~~ 661 (693)
++.+ .+++.++.+...-...++.+
T Consensus 303 ~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECS-SCCCEECTTTTCTTCCCCEE
T ss_pred EeCC-CccCccchhhhcCCcchhhh
Confidence 9855 57888887766554555544
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=4.2e-10 Score=103.13 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=44.7
Q ss_pred eeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCc
Q 042597 365 TLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHA 442 (693)
Q Consensus 365 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 442 (693)
.++++++.++.+|... .++|++|+|++| .+..+ |..|.++++|++|+|++|+++.+|.. +.++++|++|++++|
T Consensus 16 ~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3444444444444331 144444555444 22222 33444445555555555555444443 244455555555544
Q ss_pred ccccccccccccCCCccccccccccC
Q 042597 443 YKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 443 ~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
.+..+|...+..+++|++|++.+|.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCC
Confidence 3444444334445555555554443
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=4.5e-10 Score=102.56 Aligned_cols=100 Identities=26% Similarity=0.347 Sum_probs=49.9
Q ss_pred ceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCC
Q 042597 364 ITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDH 441 (693)
Q Consensus 364 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~ 441 (693)
+.+++++|.++.+|... .++|++|+|++| .+..+ |..|.++++|++|+|++|+++.+|.. +.++++|++|++++
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44455555555544432 244555555555 33333 33455555555555555555555443 34555555555555
Q ss_pred cccccccccccccCCCccccccccccC
Q 042597 442 AYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 442 ~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
| .+..+|...+..+++|++|++.+|.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 5 4444544434555555555555554
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=6.3e-10 Score=101.96 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=91.0
Q ss_pred ceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccccEEeeCCCC
Q 042597 342 KRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSLHHLDLSSTN 420 (693)
Q Consensus 342 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~l~~~~ 420 (693)
+.+++.++.+..+|.-- .++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. |.++++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 56788888888887521 389999999999999998888999999999999999 77777765 6899999999999999
Q ss_pred CCccChh-hhcCCCCcEeccCCccccccccc
Q 042597 421 ITGLPQD-LKALEKLRYLNLDHAYKLSIIPH 450 (693)
Q Consensus 421 i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~ 450 (693)
++.+|.. +.++++|++|++++| .+...+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 9999876 889999999999999 4554443
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=2e-09 Score=109.80 Aligned_cols=171 Identities=13% Similarity=0.174 Sum_probs=105.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
+.++|++..++.+.+++.. ++.+.+.|+|++|+|||++|+.+++.. .........++++.... .......+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~-----~~~~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD--GNMPHMIISGMPGIGKTTSVHCLAHEL-LGRSYADGVLELNASDD-----RGIDVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS--CCCCCEEEECSTTSSHHHHHHHHHHHH-HGGGHHHHEEEECTTSC-----CSHHHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHc--CCCCeEEEECcCCCCHHHHHHHHHHHh-cCCcccCCEEEecCccc-----cChHHHHHH
Confidence 5699999999999999876 444449999999999999999999886 21111111222222111 011111222
Q ss_pred HHHHHH---HH-ccCcEEEEEeCccccc--chhhh----------hhhhhcccchh-hhhhc--CCceEEeccCCchHHH
Q 042597 90 AADISS---IL-SRKKFVLLLDDIWERI--DLKEL----------VSLFLTTRSVD-VCDQM--DAEKLEVYSLANDEAW 150 (693)
Q Consensus 90 ~~~l~~---~l-~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr~~~-~~~~~--~~~~~~l~~l~~~e~~ 150 (693)
...+.. .+ .+++.++|+||++... ....+ ..+|+||+... +.... ....+.+.+++.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 93 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172 (323)
T ss_dssp HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHH
Confidence 222221 11 4468899999998753 22222 45666665432 22211 1224899999999999
Q ss_pred HHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchH-HHHHHH
Q 042597 151 KLFQEMVDRSTLGSHTSIPELAETLARECSGLPLA-LKTVGR 191 (693)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla-l~~~~~ 191 (693)
+++.+.+...+...+ .+.++.|++.++|.|.. +..+..
T Consensus 173 ~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 173 KRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999987754432222 57788999999999954 444433
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=2e-11 Score=114.89 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=101.2
Q ss_pred CCccceeecccccccccccc------ccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCC
Q 042597 360 CSRLITLLLYENWIEEITDG------FFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEK 433 (693)
Q Consensus 360 ~~~L~~L~l~~~~l~~~~~~------~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 433 (693)
...++.+++..+.+.+..+. .+..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 34455555555544433332 5788999999999999 777788 899999999999999999999988888999
Q ss_pred CcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeech
Q 042597 434 LRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSS 507 (693)
Q Consensus 434 L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~ 507 (693)
|++|++++| .+..+|. +..+++|++|++.+|.+... ..+..+.++++|+.++++.+..
T Consensus 95 L~~L~L~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~-------------~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 95 LEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNW-------------GEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp CSEEEEEEE-ECCCHHH--HHHHHHSSEEEESEEECCCH-------------HHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECcCC-cCCcCCc--cccCCCCCEEECCCCcCCch-------------hHHHHHhcCCCCCEEEecCCcc
Confidence 999999999 7777774 68899999999999876532 2235677788888888876653
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.1e-09 Score=99.95 Aligned_cols=101 Identities=23% Similarity=0.346 Sum_probs=88.4
Q ss_pred cceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccccEEeeCCC
Q 042597 341 AKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSLHHLDLSST 419 (693)
Q Consensus 341 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~l~~~ 419 (693)
.+.+++.++.+..+|.-. .++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. |..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 467888999988887422 489999999999999998888999999999999999 66666654 689999999999999
Q ss_pred CCCccChh-hhcCCCCcEeccCCcc
Q 042597 420 NITGLPQD-LKALEKLRYLNLDHAY 443 (693)
Q Consensus 420 ~i~~lp~~-~~~l~~L~~L~l~~~~ 443 (693)
+++.+|.. +.++++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99998875 8899999999999993
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=4.1e-09 Score=107.71 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=44.3
Q ss_pred ccccceeeeccccch--------------------hhcc--CCC--------CCccceeeccccccccccccccCCCCcc
Q 042597 338 WEGAKRVSLMDNRIL--------------------RLLE--IPT--------CSRLITLLLYENWIEEITDGFFQPMSSL 387 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~--------------------~~~~--~~~--------~~~L~~L~l~~~~l~~~~~~~~~~l~~L 387 (693)
+++++.|++++|++. .++. |.+ |.+|+.|.+.. .++.++...|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 456777788777776 1221 344 66666666666 5666666666666666
Q ss_pred cEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 388 RVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 388 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
+.+++++|......+..|..+.++.++.+..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 6666666622222223344444555444433
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.87 E-value=1.8e-08 Score=102.73 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=105.1
Q ss_pred CcccchHHHHHHHHHHhhh---cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCITD---QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.+||++..++.+..++.. .......+.|+|++|+|||++|+.+++.. ... .++++...... .
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~--------~ 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEK--------P 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCS--------H
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCC--------h
Confidence 6799999999999888864 12344678999999999999999999876 222 22332211111 1
Q ss_pred hHHHHHHHHHHc---cCcEEEEEeCcccccc--hhhh------h----------------------hhhhcccchh----
Q 042597 87 QDKAADISSILS---RKKFVLLLDDIWERID--LKEL------V----------------------SLFLTTRSVD---- 129 (693)
Q Consensus 87 ~~~~~~l~~~l~---~~~~LlvlDdv~~~~~--~~~~------~----------------------~iliTtr~~~---- 129 (693)
..+...+. .+..+++|||++.... ...+ . ++|.||....
T Consensus 78 ----~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~ 153 (324)
T 1hqc_A 78 ----GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153 (324)
T ss_dssp ----HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSC
T ss_pred ----HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCH
Confidence 12223333 3567999999987632 2212 0 1333333221
Q ss_pred -hhhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHh
Q 042597 130 -VCDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMK 194 (693)
Q Consensus 130 -~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~ 194 (693)
+..++ ...+.+.+++.++..+++.+.+....... -.+..+.++++++|.|..+..+...+.
T Consensus 154 ~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 154 PLLSRF-GIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp STTTTC-SCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred HHHhcc-cEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 12222 13489999999999999988876543222 257889999999999988877766543
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=4e-08 Score=102.69 Aligned_cols=248 Identities=17% Similarity=0.126 Sum_probs=154.4
Q ss_pred CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCCCCCccChhhhcCCCCc
Q 042597 357 IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSSTNITGLPQDLKALEKLR 435 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 435 (693)
|.++ +|+.+.+..+ ++.+....|..+ +|+.+.+..+ +..+ +..|.++.+|+.++++.|+++.+|.......+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 5554 6888887655 777777777774 6888888764 3333 3467788888888888888888877655568888
Q ss_pred EeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhc
Q 042597 436 YLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFK 515 (693)
Q Consensus 436 ~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~ 515 (693)
.+.+..+ +..++...+.++++|+.+.+..+- ..+ .... +.+ .+|+.+.+.
T Consensus 207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l--~~I----------~~~a---F~~-~~L~~i~lp------------ 256 (401)
T 4fdw_A 207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPENV--STI----------GQEA---FRE-SGITTVKLP------------ 256 (401)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCEECCTTC--CEE----------CTTT---TTT-CCCSEEEEE------------
T ss_pred EEEeCCc--hheehhhHhhCCCCCCEEecCCCc--cCc----------cccc---ccc-CCccEEEeC------------
Confidence 8888753 677777777888888888876431 110 1111 112 233333332
Q ss_pred cchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccc-----cch--hhhhcCCccEEEEeccccchhhhc
Q 042597 516 YPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVK-----DLT--WLVFVQNLKELEISFCHAVEDIII 588 (693)
Q Consensus 516 ~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~--~l~~l~~L~~L~l~~~~~~~~~~~ 588 (693)
.+++. .....+..|++|+.+.+.++.+. .++ .+..|++|+.+.|.++ ++.+..
T Consensus 257 ----------~~i~~--------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~ 316 (401)
T 4fdw_A 257 ----------NGVTN--------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ 316 (401)
T ss_dssp ----------TTCCE--------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT
T ss_pred ----------CCccE--------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh
Confidence 11111 12334577889999999888543 233 4566899999999753 443322
Q ss_pred ccccccccccccccCCcCCCcceeeccccccccccccC-CCCCCCccEEEEccCCCCCCcCCCCCCC-CCcceEEechHH
Q 042597 589 VDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPN-PLPFPKLKKIQVLHCPELKKLPLNSSSP-KERRVVIEGRKE 666 (693)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~L~~lp~~~~~~-~~~l~~~~~~~~ 666 (693)
....++++|+.+.+.. +++.+... ...+ +|+.|.+.+. .+..++.+.... ...+..+..+..
T Consensus 317 ------------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 317 ------------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp ------------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ------------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 3556678899998843 46666533 4566 9999999775 566666554443 234444444433
Q ss_pred ----HHhhcccCC
Q 042597 667 ----WWEELQWED 675 (693)
Q Consensus 667 ----~~~~l~~~~ 675 (693)
+...-.|++
T Consensus 381 ~~~~y~~a~~W~~ 393 (401)
T 4fdw_A 381 SVEKYKNANGWRD 393 (401)
T ss_dssp GHHHHHHSTTGGG
T ss_pred HHHHhhhccchhh
Confidence 333345654
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=9.8e-09 Score=104.82 Aligned_cols=174 Identities=14% Similarity=0.160 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
..++|+++.++.+..++.. ++.+.+.|+|++|+||||+|+.+++.. .....-...+.++.. ...........
T Consensus 25 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~la~~l~~~l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALAREL-FGENWRHNFLELNAS-----DERGINVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH--TCCCEEEEESCTTSSHHHHHHHHHHHH-HGGGHHHHEEEEETT-----CHHHHHTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHc--CCCCeEEEECcCCCCHHHHHHHHHHHh-cCCcccCceEEeecc-----ccCchHHHHHH
Confidence 6799999999999999887 444559999999999999999999986 111100112222211 11111111112
Q ss_pred HHHHHHH--H-ccCcEEEEEeCccccc--chhhh----------hhhhhcccchh-hhhhc--CCceEEeccCCchHHHH
Q 042597 90 AADISSI--L-SRKKFVLLLDDIWERI--DLKEL----------VSLFLTTRSVD-VCDQM--DAEKLEVYSLANDEAWK 151 (693)
Q Consensus 90 ~~~l~~~--l-~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr~~~-~~~~~--~~~~~~l~~l~~~e~~~ 151 (693)
....... + .+++.++|+||++... ....+ .++|+||.... +.... ....+.+.+++.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~ 176 (327)
T 1iqp_A 97 VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 176 (327)
T ss_dssp HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHH
T ss_pred HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHH
Confidence 2121111 1 2568899999998653 22333 45666665532 21111 12248999999999999
Q ss_pred HHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHh
Q 042597 152 LFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMK 194 (693)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~ 194 (693)
++.+.+.......+ .+..+.|++.++|.|..+..+...+.
T Consensus 177 ~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 177 RLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp HHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99887754432222 57788999999999987665554443
No 158
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.78 E-value=7e-08 Score=93.61 Aligned_cols=162 Identities=12% Similarity=0.056 Sum_probs=101.2
Q ss_pred Ccccch---HHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQ---ELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr---~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.|+|+ +..++.+..+... ...+.+.|+|++|+||||+|+.+++.. ......+.|+++.+.... .
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~---~~~~~~~~~~~~~~~~~~-------~ 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARA---NELERRSFYIPLGIHASI-------S 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEEEGGGGGGS-------C
T ss_pred hhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEHHHHHHH-------H
Confidence 568874 3555566665544 356789999999999999999999987 222334566655332210 0
Q ss_pred hHHHHHHHHHHccCcEEEEEeCcccccc----hhhh----------h--hhhhcccchh---------hhhhcCC-ceEE
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERID----LKEL----------V--SLFLTTRSVD---------VCDQMDA-EKLE 140 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~----------~--~iliTtr~~~---------~~~~~~~-~~~~ 140 (693)
.+.. +.+ .+..++|+||++.... ...+ . ++|+||+... +..++.. ..+.
T Consensus 96 ~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~ 170 (242)
T 3bos_A 96 TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQ 170 (242)
T ss_dssp GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEE
T ss_pred HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEE
Confidence 0000 111 3456899999986532 1222 2 4777776422 1222211 3489
Q ss_pred eccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 141 VYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 141 l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
+.+++.++..+++.+.+.......+ .+..+.+++.++|.+..+..+..
T Consensus 171 l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 171 LQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999999988764442222 67788999999998876655443
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.78 E-value=1.2e-08 Score=95.08 Aligned_cols=100 Identities=16% Similarity=0.263 Sum_probs=62.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~~ 85 (693)
+.++||+++++++.+++.. ...+.+.|+|++|+|||++|+.+++....... .....+++++........ ....
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 98 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK-YRGE 98 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTC-SHHH
T ss_pred cccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCC-cccc
Confidence 6799999999999999877 44567899999999999999999998622110 122344454422111000 0011
Q ss_pred hhHHHHHHHHHH--ccCcEEEEEeCcccc
Q 042597 86 LQDKAADISSIL--SRKKFVLLLDDIWER 112 (693)
Q Consensus 86 ~~~~~~~l~~~l--~~~~~LlvlDdv~~~ 112 (693)
.......+.+.+ .+++.++||||++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~vl~iDe~~~l 127 (195)
T 1jbk_A 99 FEERLKGVLNDLAKQEGNVILFIDELHTM 127 (195)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEETGGGG
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCHHHH
Confidence 111222222222 356889999999875
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=1.5e-08 Score=104.49 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=77.4
Q ss_pred eeeeccc-cchhhccCCCCCccceeeccc-cccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEeeCCC
Q 042597 343 RVSLMDN-RILRLLEIPTCSRLITLLLYE-NWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLDLSST 419 (693)
Q Consensus 343 ~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~ 419 (693)
.++..++ .+..+|.+..+.+|+.|+|++ |.++.+++..|..+++|++|+|++| .+..+ |..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455666 677777777788888899886 8888888877888888999999888 45444 456788888999999888
Q ss_pred CCCccChhhhcCCCCcEeccCCc
Q 042597 420 NITGLPQDLKALEKLRYLNLDHA 442 (693)
Q Consensus 420 ~i~~lp~~~~~l~~L~~L~l~~~ 442 (693)
+++.+|..+.....|+.|++.+|
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS
T ss_pred ccceeCHHHcccCCceEEEeeCC
Confidence 88888876555444888888887
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.71 E-value=1.2e-07 Score=98.71 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=105.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-------------------EEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD-------------------VVIWA 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~-------------------~~~wv 70 (693)
+.++|++..++.+..++... ...+.+.|+|++|+||||+|+.+++.. .....+. ..+.+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred hhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 56999999999999999763 223578999999999999999999876 2211110 01111
Q ss_pred EEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCccccc--chhhh----------hhhhhccc-chhhhh
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERI--DLKEL----------VSLFLTTR-SVDVCD 132 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr-~~~~~~ 132 (693)
... . ....++ ...+.+.+ .+++.++|+||++... ....+ ..+|++|. ...+..
T Consensus 94 ~~~-----~---~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 94 DAA-----S---RTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp ETT-----C---SCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred ccc-----c---cCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 110 0 001111 12222222 3467899999998653 23333 33455544 332222
Q ss_pred hc--CCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 133 QM--DAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 133 ~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
.. ....+.+.+++.++..+++.+.+...+...+ .+.++.|++.++|.|..+..+..
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 2234899999999999999887754432222 56788999999999987766554
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=1.9e-07 Score=97.45 Aligned_cols=118 Identities=12% Similarity=0.202 Sum_probs=91.8
Q ss_pred ccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 340 GAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
+++.+.+..+ +..+.. |.++ +|+.+.+.. .++.+....|..|++|+.++++.| .+..++.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 5666666554 555543 5564 699999986 788888888999999999999988 677777665557899999998
Q ss_pred CCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCcccccccc
Q 042597 418 STNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLL 465 (693)
Q Consensus 418 ~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~ 465 (693)
. .++.++.. +.++++|+.+++..+ +..++...+.+ .+|+.+.+.
T Consensus 212 ~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE
T ss_pred C-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC
Confidence 4 47777654 788999999999874 67788776766 789998885
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.1e-07 Score=92.56 Aligned_cols=149 Identities=8% Similarity=0.054 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC--C-C-EEEEEEEeccCCchhh---
Q 042597 11 TVVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN--F-D-VVIWAAVIGFSDDKKW--- 81 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~--f-~-~~~wv~~~~~~~~~~~--- 81 (693)
.+.||+++++++...|.. ..+..+.+.|+|++|+|||++++.+++........ . . ..+++++.........
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999988875 34677889999999999999999999988322111 1 1 2455555332221100
Q ss_pred ----------hhhchhHHHHHHHHHH---ccCcEEEEEeCcccccchhhh-----------hh--hhhcccch-------
Q 042597 82 ----------KEKSLQDKAADISSIL---SRKKFVLLLDDIWERIDLKEL-----------VS--LFLTTRSV------- 128 (693)
Q Consensus 82 ----------~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~-----------~~--iliTtr~~------- 128 (693)
......+....+.+.+ ++++++++||+++...+-+.+ ++ +|.++...
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 0011122223333332 456799999999976432222 22 22223221
Q ss_pred --hhhhhcCCceEEeccCCchHHHHHHHHHhhc
Q 042597 129 --DVCDQMDAEKLEVYSLANDEAWKLFQEMVDR 159 (693)
Q Consensus 129 --~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~ 159 (693)
.+..++....+.+++++.+|..+++.+++..
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1223444445999999999999999988754
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=5.6e-08 Score=100.09 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=87.0
Q ss_pred ceeecccc-ccccccccccCCCCcccEEEccC-Ccchhhch-HhhhccccccEEeeCCCCCCccCh-hhhcCCCCcEecc
Q 042597 364 ITLLLYEN-WIEEITDGFFQPMSSLRVLALGR-NFFLSKLR-SGIANLVSLHHLDLSSTNITGLPQ-DLKALEKLRYLNL 439 (693)
Q Consensus 364 ~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-~~~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l 439 (693)
..++..++ .++.+|. +..+++|++|+|++ | .+..+| ..|+++++|++|+|++|+++.+|+ .+.++++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35677877 8988877 89999999999996 7 666665 679999999999999999999765 5799999999999
Q ss_pred CCcccccccccccccCCCccccccccccCCC
Q 042597 440 DHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 440 ~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
++| .+..+|...+..++ |+.|++.+|.+.
T Consensus 88 ~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999 78889987666565 999999988765
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=8.7e-08 Score=97.33 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=105.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
+.++|++..++.+.+++.. ++.+.+.++|++|+|||++|+.+++.. .....-...+.++..... ........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 88 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDER-----GIDVVRHK 88 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHH-HTTCHHHHCEEEETTSTT-----CTTTSSHH
T ss_pred HHHhCCHHHHHHHHHHHhC--CCCCeEEEECcCCcCHHHHHHHHHHHh-cCCcccCCeEEEeCcccc-----ChHHHHHH
Confidence 5699999999999998876 444458999999999999999999875 111100011222221111 11111222
Q ss_pred HHHHHHH--H-ccCcEEEEEeCcccccc--hhhh----------hhhhhcccchh-hhhhc--CCceEEeccCCchHHHH
Q 042597 90 AADISSI--L-SRKKFVLLLDDIWERID--LKEL----------VSLFLTTRSVD-VCDQM--DAEKLEVYSLANDEAWK 151 (693)
Q Consensus 90 ~~~l~~~--l-~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~~~-~~~~~--~~~~~~l~~l~~~e~~~ 151 (693)
....... + .+++.++|+||++.... ...+ .++|+||.... +.... ....+.+.+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~ 168 (319)
T 2chq_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (319)
T ss_dssp HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHH
T ss_pred HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHH
Confidence 2222211 1 25688999999986532 2222 44555554432 22211 12248999999999999
Q ss_pred HHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 152 LFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
++.+.+...+...+ .+..+.+++.++|.+..+......
T Consensus 169 ~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 169 RLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99887765442222 577889999999999765544443
No 166
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=4.3e-07 Score=98.29 Aligned_cols=173 Identities=15% Similarity=0.187 Sum_probs=102.2
Q ss_pred CcccchHHHHHHHHHHhhhcC---------------CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQE---------------KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~---------------~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~ 74 (693)
..++|++..++++.+|+.... +..+.+.|+|++|+||||+|+.+++.. . + .++.+++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 579999999999999987510 134789999999999999999999876 1 1 223333322
Q ss_pred cCCchhhhhh--------chhHHHHHHHH--HHccCcEEEEEeCcccccc-----hhhh--------hhhhhcccchh--
Q 042597 75 FSDDKKWKEK--------SLQDKAADISS--ILSRKKFVLLLDDIWERID-----LKEL--------VSLFLTTRSVD-- 129 (693)
Q Consensus 75 ~~~~~~~~~~--------~~~~~~~~l~~--~l~~~~~LlvlDdv~~~~~-----~~~~--------~~iliTtr~~~-- 129 (693)
.......... ..........+ ...+++.++||||++.... +..+ ..||+++.+..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~ 192 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLP 192 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSS
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCc
Confidence 2110000000 00000000000 0125678999999986532 1222 34555544322
Q ss_pred -hhhhcC-CceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc-hHHHHHHH
Q 042597 130 -VCDQMD-AEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP-LALKTVGR 191 (693)
Q Consensus 130 -~~~~~~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lal~~~~~ 191 (693)
+..... ...+.+.+++.++..+++.+.+.......+ .+..+.|++.++|.+ .++..+..
T Consensus 193 ~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 193 KMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred cchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 211111 123899999999999999887765443333 456788999999955 44554433
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.55 E-value=7.6e-07 Score=93.86 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=103.2
Q ss_pred CcccchHHHH---HHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLL---YRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~---~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.+||++..+ ..+...+.. +..+.+.|+|++|+||||+|+.+++.. ... ++.+..... . ....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~-----f~~l~a~~~-~---~~~i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYA---NAD-----VERISAVTS-G---VKEI 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHT---TCE-----EEEEETTTC-C---HHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHh---CCC-----eEEEEeccC-C---HHHH
Confidence 6799999998 778888877 556789999999999999999999876 222 222221111 1 1111
Q ss_pred hHHHHHHHH-HHccCcEEEEEeCccccc--chhhh--------hhhh-hcccchh--hhhh--cCCceEEeccCCchHHH
Q 042597 87 QDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL--------VSLF-LTTRSVD--VCDQ--MDAEKLEVYSLANDEAW 150 (693)
Q Consensus 87 ~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~--------~~il-iTtr~~~--~~~~--~~~~~~~l~~l~~~e~~ 150 (693)
......... ...+++.+++||+++... ....+ ..+| .||.+.. +... .....+.+.+++.++..
T Consensus 92 r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~ 171 (447)
T 3pvs_A 92 REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIE 171 (447)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHH
Confidence 222222211 124678899999998663 22222 2233 3544432 1111 12224889999999999
Q ss_pred HHHHHHhhcccCC----CCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 151 KLFQEMVDRSTLG----SHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 151 ~l~~~~~~~~~~~----~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
+++.+.+...... ...--.+..+.+++.++|.+..+..+...
T Consensus 172 ~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 172 QVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp HHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999887642111 01112577889999999998766555443
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=5.8e-07 Score=89.56 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=99.5
Q ss_pred CcccchHHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.++|.++.++++.+.+... -.....+.|+|++|+|||++|+.+++.. .. ..+.+...+....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELVKK 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHHHh
Confidence 67999999999999887531 1345679999999999999999999876 22 1222333222111
Q ss_pred hhhhhhchhHHHHH-HHHHHccCcEEEEEeCccccc----------c---hhhh---------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAAD-ISSILSRKKFVLLLDDIWERI----------D---LKEL---------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~~----------~---~~~~---------------~~iliTtr~~~ 129 (693)
. .. ........ +.......+.+++|||++... . ...+ ..||.||....
T Consensus 91 ~--~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 91 F--IG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp S--TT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred c--cc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 0 00 11111222 222234566899999997641 0 1111 23666666543
Q ss_pred hhh-----hcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-cchHHHHHH
Q 042597 130 VCD-----QMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSG-LPLALKTVG 190 (693)
Q Consensus 130 ~~~-----~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plal~~~~ 190 (693)
... ..... .+.++..+.++..+++..++.......+ .....++..+.| .|..+..+.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED----VNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHHCTTCCHHHHHHHH
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc----CCHHHHHHHcCCCCHHHHHHHH
Confidence 221 11222 2889999999999999887754432222 225777888877 454444433
No 169
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.48 E-value=1.6e-06 Score=87.76 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=99.0
Q ss_pred CcccchHHHHHHHHHHhh----------hcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCIT----------DQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~----------~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.+..++.+.+.+. ......+.+.|+|++|+|||++|+.+++.. ... .+.++..+....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~~- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSSDLVSK- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHHHHHTT-
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchHHHhhc-
Confidence 669999999999998883 111234679999999999999999999976 221 223333221110
Q ss_pred hhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc-------------hhhh-------------hhhhhcccchhh--
Q 042597 80 KWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID-------------LKEL-------------VSLFLTTRSVDV-- 130 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~-------------~~~~-------------~~iliTtr~~~~-- 130 (693)
. ..........+.+. -..+..+|+|||++.... ...+ ..||.||.....
T Consensus 91 -~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 -W-MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp -T-GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred -c-cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 0 01112222222222 234678999999985521 1111 234445544322
Q ss_pred ---hhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc-chHHHHHH
Q 042597 131 ---CDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL-PLALKTVG 190 (693)
Q Consensus 131 ---~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plal~~~~ 190 (693)
..++ ...+.++..+.++-.+++..++....... -......|++.+.|. +-.|..+.
T Consensus 169 ~al~~Rf-~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 169 SAIRRRF-ERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHC-CEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHccc-CeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2211 12377888899999999988776543211 245678899998874 44444443
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=3.9e-07 Score=93.94 Aligned_cols=170 Identities=13% Similarity=0.154 Sum_probs=102.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccc-cCCCCEEEEEEEeccCCchhhhhhchhH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQ-QHNFDVVIWAAVIGFSDDKKWKEKSLQD 88 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~~~~~ 88 (693)
..++|+++.++.+..++.. +..+.+.|+|++|+||||+|+.+++..... ...+. +..++...... .....+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~-----~~~~~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKS--ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR-ILELNASDERG-----ISIVRE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTC--TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS-EEEECSSSCCC-----HHHHTT
T ss_pred HHhhCCHHHHHHHHHHHhc--CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc-eEEEccccccc-----hHHHHH
Confidence 6699999999999999876 333448999999999999999999886211 11111 12222211111 011111
Q ss_pred HHHHHHHH------------H-ccCcEEEEEeCcccccc--hhhh----------hhhhhcccch-hhhhhc--CCceEE
Q 042597 89 KAADISSI------------L-SRKKFVLLLDDIWERID--LKEL----------VSLFLTTRSV-DVCDQM--DAEKLE 140 (693)
Q Consensus 89 ~~~~l~~~------------l-~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~~-~~~~~~--~~~~~~ 140 (693)
........ . .++.-++++|+++.... ...+ .++|++|... .+.... ....+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 11111111 0 23456999999986532 2222 3455555432 222211 112488
Q ss_pred eccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 141 VYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 141 l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
+.+++.++..+++.+.+.......+ .+..+.|++.++|.|..+..+.
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999887754432222 6788999999999998655443
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.47 E-value=4.7e-08 Score=101.09 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=51.2
Q ss_pred CccceeeccccccccccccccC-----CCCcccEEEccCCcchhhchHh-hhccccccEEeeCCCCCCccC-----hhh-
Q 042597 361 SRLITLLLYENWIEEITDGFFQ-----PMSSLRVLALGRNFFLSKLRSG-IANLVSLHHLDLSSTNITGLP-----QDL- 428 (693)
Q Consensus 361 ~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~l~~~~i~~lp-----~~~- 428 (693)
++|+.|++++|.++......+. ..++|++|+|++|......... ...+.+|++|+|++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666665543322221 2256666666666322222222 233556666666666665421 111
Q ss_pred hcCCCCcEeccCCcccccc-----cccccccCCCccccccccccC
Q 042597 429 KALEKLRYLNLDHAYKLSI-----IPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 429 ~~l~~L~~L~l~~~~~l~~-----~p~~~~~~l~~L~~L~l~~~~ 468 (693)
...++|++|++++| .+.. ++.. +..+++|++|++++|.
T Consensus 152 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 152 HDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTG 194 (372)
T ss_dssp STTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSS
T ss_pred hcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCC
Confidence 12455666666666 2322 1111 2345555555555554
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.46 E-value=4.6e-06 Score=82.25 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=101.6
Q ss_pred CcccchHHHHHHHHHH-------hhh-cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEec-cCCchh
Q 042597 10 HTVVGQELLLYRVWRC-------ITD-QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIG-FSDDKK 80 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~-------l~~-~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ 80 (693)
..++|++..++++.+. +.. .......+.|+|++|+|||++|+.+++.. ... . +.++... .....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~--~-~~i~~~~~~~g~~- 105 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFP--F-IKICSPDKMIGFS- 105 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCS--E-EEEECGGGCTTCC-
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCC--E-EEEeCHHHhcCCc-
Confidence 5688998887777763 221 13567889999999999999999999975 222 1 1222211 11100
Q ss_pred hhhhchhHHHHHHHHHHccCcEEEEEeCccccc---------c---hhhh-------------hhhhhcccchhhhhh--
Q 042597 81 WKEKSLQDKAADISSILSRKKFVLLLDDIWERI---------D---LKEL-------------VSLFLTTRSVDVCDQ-- 133 (693)
Q Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---------~---~~~~-------------~~iliTtr~~~~~~~-- 133 (693)
...........+......+..+++|||++... + ...+ ..||.||........
T Consensus 106 -~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 106 -ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp -HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 00001111222223334568899999987640 1 1111 235566665543322
Q ss_pred --cC-CceEEeccCCc-hHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc------chHHHHHHHHHhcCCChhHHH
Q 042597 134 --MD-AEKLEVYSLAN-DEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL------PLALKTVGRAMKSQTKVGDWQ 203 (693)
Q Consensus 134 --~~-~~~~~l~~l~~-~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~------Plal~~~~~~l~~~~~~~~~~ 203 (693)
.. ...+.+++++. ++..+++.+.. . . ..+....|++.+.|. ..++.++-.+ ........+.
T Consensus 185 l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~--~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a-~~~~~~~~~~ 255 (272)
T 1d2n_A 185 MLNAFSTTIHVPNIATGEQLLEALELLG---N--F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS-LQMDPEYRVR 255 (272)
T ss_dssp CTTTSSEEEECCCEEEHHHHHHHHHHHT---C--S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-TTSCGGGHHH
T ss_pred hhcccceEEcCCCccHHHHHHHHHHhcC---C--C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHH-hhhchHHHHH
Confidence 11 12288888988 66666665421 1 1 156788999999883 3333333333 2223445666
Q ss_pred HHHHHHhh
Q 042597 204 RAIKKMRI 211 (693)
Q Consensus 204 ~~l~~l~~ 211 (693)
.++..+..
T Consensus 256 ~~~~~l~~ 263 (272)
T 1d2n_A 256 KFLALLRE 263 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.46 E-value=6.8e-07 Score=94.40 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
...+.|+|++|+||||||+.+++.. .....-..++++++..... .............+.+.++.+.-+++|||++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l-~~~~~~~~v~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSEKFLN--DLVDSMKEGKLNEFREKYRKKVDILLIDDVQFL 206 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH-HHHCCSSCEEEEEHHHHHH--HHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeHHHHHH--HHHHHHHcccHHHHHHHhcCCCCEEEEeCcccc
Confidence 6789999999999999999999976 2221112345555422211 000000000112233334436679999999865
Q ss_pred cc----hhhh-----------hhhhhcccch---------hhhhhcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 113 ID----LKEL-----------VSLFLTTRSV---------DVCDQMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 113 ~~----~~~~-----------~~iliTtr~~---------~~~~~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
.. ...+ ..||+||... .+..++..+ .+.+.+++.++..+++.+.+.......+
T Consensus 207 ~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~-- 284 (440)
T 2z4s_A 207 IGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP-- 284 (440)
T ss_dssp SSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC--
T ss_pred cCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 42 1112 4577777652 223334322 3789999999999999988765443333
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHH
Q 042597 168 IPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
.+..+.|++.+.|.+..+..+..
T Consensus 285 -~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 285 -EEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp -TTHHHHHHHHCCSCHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHH
Confidence 45678899999999876554433
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.46 E-value=2.1e-06 Score=88.91 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=37.3
Q ss_pred CcccchHHHHHHH---HHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRV---WRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l---~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+||++...+.+ ...+.......+.+.|+|++|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999987764 44444432234689999999999999999999987
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.44 E-value=2.7e-06 Score=87.03 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=101.5
Q ss_pred CcccchHHHHHHHHHHhhhc---CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCITDQ---EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.++|++..++.+..++... ......|.|+|++|+|||++|+.+++.. ...| +.+++.... ..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~--------~~ 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIE--------KS 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCC--------SH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhcc--------ch
Confidence 56999999999999998752 3455678999999999999999998875 2222 222221111 11
Q ss_pred hHHHHHHHHHHccCcEEEEEeCcccccc--hhhh------h----------------------hhhhcccch-----hhh
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERID--LKEL------V----------------------SLFLTTRSV-----DVC 131 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~~------~----------------------~iliTtr~~-----~~~ 131 (693)
......+.. ..+..+++||+++.... ...+ . .+|.+|... .+.
T Consensus 95 ~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~ 172 (338)
T 3pfi_A 95 GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLR 172 (338)
T ss_dssp HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHH
T ss_pred hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHH
Confidence 111111111 24667999999986631 1111 0 122233321 122
Q ss_pred hhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 132 DQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 132 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
.++ ...+.+.+++.++..+++.+.+....... -.+..+.+++.+.|.|..+..+...
T Consensus 173 ~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 173 DRF-GMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp TTC-SEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hhc-CEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 222 13489999999999999988776543211 2577888999999999666555443
No 176
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=4.1e-08 Score=101.54 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=73.9
Q ss_pred cccceeeeccccchhh--ccC-CCCCccceeecccccccccccccc-----CCCCcccEEEccCCcchh----hchHhhh
Q 042597 339 EGAKRVSLMDNRILRL--LEI-PTCSRLITLLLYENWIEEITDGFF-----QPMSSLRVLALGRNFFLS----KLRSGIA 406 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~--~~~-~~~~~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~L~~~~~~~----~~p~~~~ 406 (693)
.+++.|++.+|.+... ..+ ..+++|+.|++++|.++......+ ...++|++|+|++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3566677777665431 112 234467777777776654433322 245667777777773222 2344455
Q ss_pred ccccccEEeeCCCCCCc-----cChhhhcCCCCcEeccCCccccccc-----ccccccCCCccccccccccCCCc
Q 042597 407 NLVSLHHLDLSSTNITG-----LPQDLKALEKLRYLNLDHAYKLSII-----PHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 407 ~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~~-----p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
.+++|++|+|++|.++. ++..+...++|++|++++| .+... +.. +...++|++|++++|.+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARA-AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHH-HHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHH-HHhCCCCCEEeccCCCCCH
Confidence 66677777777777664 3444566667777777776 33322 111 2345667777777776543
No 177
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.43 E-value=1.6e-06 Score=88.05 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=95.3
Q ss_pred Cccc-chHH--HHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVV-GQEL--LLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~v-Gr~~--~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.|| |... ....+..+..........+.|+|++|+||||+|+.+++.... . . ..++++++..... .......
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~-~-~-~~~~~i~~~~~~~--~~~~~~~ 85 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK-R-G-YRVIYSSADDFAQ--AMVEHLK 85 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH-T-T-CCEEEEEHHHHHH--HHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH-C-C-CEEEEEEHHHHHH--HHHHHHH
Confidence 4565 6433 333444444432224578999999999999999999998621 1 1 2345555422211 0000000
Q ss_pred hHHHHHHHHHHccCcEEEEEeCcccccc---h-hhh-----------hhhhhcccch---------hhhhhcCC-ceEEe
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERID---L-KEL-----------VSLFLTTRSV---------DVCDQMDA-EKLEV 141 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~-~~~-----------~~iliTtr~~---------~~~~~~~~-~~~~l 141 (693)
......+.+.. .+..+++|||++.... . ..+ ..||+||... .+..++.. ..+.+
T Consensus 86 ~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 86 KGTINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp HTCHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred cCcHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 00111122222 2366999999986542 1 111 3466666532 22333333 23889
Q ss_pred ccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 142 YSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 142 ~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
++ +.++..+++.+.+.......+ .+..+.|++.+ |....+..+
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHHHHH
Confidence 99 999999999988765443222 67788899999 877554433
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.1e-06 Score=90.59 Aligned_cols=178 Identities=10% Similarity=0.123 Sum_probs=99.0
Q ss_pred CcccchHHHHHHHHHHh-hhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc-C--CCCEEEEE------------E--
Q 042597 10 HTVVGQELLLYRVWRCI-TDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ-H--NFDVVIWA------------A-- 71 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l-~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~-~--~f~~~~wv------------~-- 71 (693)
+.++|++..++.+..++ .. ++.+.+.|+|++|+||||+|+.++....... + .++...|. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~--~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP--RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT--TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 67999999999999888 44 3333399999999999999999988541111 0 01110000 0
Q ss_pred -EeccCCchhhhhhchhHHHHHHHHHH--------------ccCcEEEEEeCcccccc--hhhh----------hhhhhc
Q 042597 72 -VIGFSDDKKWKEKSLQDKAADISSIL--------------SRKKFVLLLDDIWERID--LKEL----------VSLFLT 124 (693)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~l~~~l--------------~~~~~LlvlDdv~~~~~--~~~~----------~~iliT 124 (693)
...... ..............+.+.. .+++-++|+|+++.... ...+ ..+|++
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 92 YHLEITP-SDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp SEEEECC-C----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred ceEEecH-hhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 000000 0000000001111122211 23556999999987421 1222 345555
Q ss_pred ccc-hhhhhhc--CCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 125 TRS-VDVCDQM--DAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 125 tr~-~~~~~~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
|.+ ..+.... +...+++.+++.++..+++.+.+...+...+ ..+.++.|++.++|.+..+..+...
T Consensus 171 t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 171 CDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLMLES 239 (354)
T ss_dssp ESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred eCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 544 3332222 1234899999999999999887755432111 0367789999999999766555543
No 179
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.40 E-value=4e-06 Score=84.71 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=102.0
Q ss_pred ceecCCC--CcccchHHHHHHHHHHhhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 3 AVELPVD--HTVVGQELLLYRVWRCITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 3 ~~~~p~~--~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
..+.|.. +.++|.++..+.+.+.+.- .....+.+.|+|++|+|||++|+.+++.. .. ...+.+
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~--~~~~~i 77 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSI 77 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TS--CEEEEE
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---CC--CcEEEE
Confidence 3455543 6799999999888887631 01234689999999999999999999875 11 122333
Q ss_pred EEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc-------------hhhh------------h-hhhh
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID-------------LKEL------------V-SLFL 123 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~-------------~~~~------------~-~ili 123 (693)
...+.... ... ........+.+. -..++.+|+||+++.... ...+ . .||.
T Consensus 78 ~~~~l~~~--~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 78 SSSDLVSK--WLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp ECCSSCCS--SCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred EhHHHHhh--hhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 33322210 001 112222222222 245778999999986510 0111 1 2333
Q ss_pred cccchh-----hhhhcCC-ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc-hHHHHHHH
Q 042597 124 TTRSVD-----VCDQMDA-EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP-LALKTVGR 191 (693)
Q Consensus 124 Ttr~~~-----~~~~~~~-~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lal~~~~~ 191 (693)
||.... +.. +. ..+.++..+.++..+++..++....... -....+.|++.+.|.. -.|..+.+
T Consensus 155 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 155 ATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred ecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 443322 122 22 2377888888888889988765433111 2567789999998874 44555444
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.40 E-value=1.9e-06 Score=88.49 Aligned_cols=169 Identities=11% Similarity=0.119 Sum_probs=100.1
Q ss_pred CcccchHHHHHHHHHHhhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.+..++.+.+.+.. .....+.+.|+|++|+|||++|+.+++.. .. ..+.+++.......
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSKW 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhccc
Confidence 5699999999999988752 11345789999999999999999999875 21 22344443322210
Q ss_pred hhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc-------------hhhh--------------hhhhhcccchh-h
Q 042597 80 KWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID-------------LKEL--------------VSLFLTTRSVD-V 130 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~-------------~~~~--------------~~iliTtr~~~-~ 130 (693)
. .........+... -..++.+|+|||++.... ...+ ..||.||.... +
T Consensus 158 ~---g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 158 V---GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234 (357)
T ss_dssp T---THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGB
T ss_pred c---chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhC
Confidence 0 0111122222222 235678999999964411 1111 12343444322 1
Q ss_pred ----hhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-cchHHHHHHH
Q 042597 131 ----CDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSG-LPLALKTVGR 191 (693)
Q Consensus 131 ----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plal~~~~~ 191 (693)
..++. ..+.+...+.++..+++...+....... .....+.|++.+.| .+..+..+..
T Consensus 235 ~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 235 DEAARRRLV-KRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CHHHHTTCC-EEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHhhCc-eEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 22111 2377888888888888887765433111 15678899999988 4455655544
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.39 E-value=3.6e-07 Score=84.47 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=41.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++||+++++.+.+++.. ...+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999876 445677999999999999999999986
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.39 E-value=4.8e-06 Score=81.67 Aligned_cols=172 Identities=18% Similarity=0.171 Sum_probs=95.8
Q ss_pred CcccchHHHHHHHHHHhhh---c-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD---Q-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.+...+.+.+.+.. . ....+.+.|+|++|+|||++|+.+++.. ... .+.+.......
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 5789999988888766532 1 0234568899999999999999999976 222 23333322211
Q ss_pred hhhhhchhHHHHHHHHHHccCcEEEEEeCccccc--------------c---hhhh------------hhhhhcccchhh
Q 042597 80 KWKEKSLQDKAADISSILSRKKFVLLLDDIWERI--------------D---LKEL------------VSLFLTTRSVDV 130 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------------~---~~~~------------~~iliTtr~~~~ 130 (693)
.............+.........+++|||++... . +..+ ..+|.||.....
T Consensus 78 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 78 VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADI 157 (262)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhh
Confidence 0001111112222233334467899999998651 0 1111 134445544322
Q ss_pred hh-h-c---CC-ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 042597 131 CD-Q-M---DA-EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTVGR 191 (693)
Q Consensus 131 ~~-~-~---~~-~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~~~ 191 (693)
.. . . .. ..+.++..+.++..+++.+++...... .........+++.+.|.+- .+..+..
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 11 1 1 22 237888999999999998877654322 1222345788888888764 4444433
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.38 E-value=2.1e-06 Score=86.53 Aligned_cols=158 Identities=14% Similarity=0.201 Sum_probs=88.6
Q ss_pred cccchHHHHHHHHHHhhhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC--EEEEEEEecc
Q 042597 11 TVVGQELLLYRVWRCITDQ-------------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD--VVIWAAVIGF 75 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~~-------------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~--~~~wv~~~~~ 75 (693)
.++|.+...+.+.+++... ......+.|+|++|+|||++|+.+++.. ....... ..+.++....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHHHh
Confidence 4899999998888776421 2445679999999999999999998876 2222111 2233333222
Q ss_pred CCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc-----------cchhhh----------hhhhhcccchh-----
Q 042597 76 SDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER-----------IDLKEL----------VSLFLTTRSVD----- 129 (693)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~~~~~----------~~iliTtr~~~----- 129 (693)
... ......... ..+.+. .+..+++|||++.. .....+ ..+|+||....
T Consensus 111 ~~~--~~g~~~~~~-~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~ 185 (309)
T 3syl_A 111 VGQ--YIGHTAPKT-KEVLKR--AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185 (309)
T ss_dssp CCS--STTCHHHHH-HHHHHH--HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHH
T ss_pred hhh--cccccHHHH-HHHHHh--cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHH
Confidence 110 000001111 111111 14469999999844 111222 24556654322
Q ss_pred -----hhhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHH
Q 042597 130 -----VCDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARE 178 (693)
Q Consensus 130 -----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~ 178 (693)
+..++. ..+.+++++.++..+++.+++.......+ .+..+.+++.
T Consensus 186 ~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~---~~~~~~l~~~ 235 (309)
T 3syl_A 186 QSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLDDQNYQMT---PEAETALRAY 235 (309)
T ss_dssp HHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHH
T ss_pred hhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Confidence 222221 34899999999999999888765432222 3444444444
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.36 E-value=4.9e-06 Score=86.72 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=98.7
Q ss_pred CcccchHHHHHHHHHHhhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|++..++.+.+++.. .....+.+.|+|++|+|||++|+.++++. .. ..+.+++......
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhcc-
Confidence 5699999999999998832 11234689999999999999999998875 21 2233333222210
Q ss_pred hhhhhchhHHHHHHHHHH-ccCcEEEEEeCccccc--------c-h----hhh--------------hhhhhcccchh-h
Q 042597 80 KWKEKSLQDKAADISSIL-SRKKFVLLLDDIWERI--------D-L----KEL--------------VSLFLTTRSVD-V 130 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~--------~-~----~~~--------------~~iliTtr~~~-~ 130 (693)
... ........+.+.. .....+|+|||++... . . ..+ ..||.||.... +
T Consensus 188 -~~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 188 -YVG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred -ccc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 000 1112222222222 3456899999997551 0 0 011 12344444322 1
Q ss_pred hh--hcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 042597 131 CD--QMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTVGR 191 (693)
Q Consensus 131 ~~--~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~~~ 191 (693)
.. ..... .+.+...+.++..+++...+...... -.......|++.+.|..- ++..+..
T Consensus 266 ~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 266 DEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11 11222 37888889999999998877654322 125677899999988654 5554443
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.36 E-value=8.1e-06 Score=81.67 Aligned_cols=169 Identities=11% Similarity=0.144 Sum_probs=99.3
Q ss_pred CcccchHHHHHHHHHHhhhc----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITDQ----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.+...+.+.+++... ....+.+.|+|++|+|||++|+.+++.. .. ..+.+++.......
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTSKY 94 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSSSS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhhcc
Confidence 67999999999999887431 1235688999999999999999999876 22 12333332222100
Q ss_pred hhhhhchhHHHHHHH-HHHccCcEEEEEeCcccccc-------------hhhh---------------hhhhhcccchh-
Q 042597 80 KWKEKSLQDKAADIS-SILSRKKFVLLLDDIWERID-------------LKEL---------------VSLFLTTRSVD- 129 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~-------------~~~~---------------~~iliTtr~~~- 129 (693)
. .........+. .....++.++++|+++.... ...+ ..||.||....
T Consensus 95 ~---~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 95 V---GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp C---SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred c---chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 0 01122222222 22245678999999975411 0011 12444554432
Q ss_pred ----hhhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 042597 130 ----VCDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTVGR 191 (693)
Q Consensus 130 ----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~~~ 191 (693)
+..++. ..+.++..+.++...++.+.+....... -....+.+++.+.|.+- .+..+..
T Consensus 172 l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 172 LDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp BCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222222 2367777777888888887765433211 25677899999999885 5544443
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.28 E-value=8.2e-06 Score=82.78 Aligned_cols=164 Identities=11% Similarity=0.111 Sum_probs=98.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
+.++|+++.++.+.+++... ...+++.++|++|+|||++|+.+++.. . ..++.++.... . .+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~------~---~~~i 89 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC------K---IDFV 89 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC------C---HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc------C---HHHH
Confidence 67999999999999999863 233677888889999999999999876 1 11223332111 1 1222
Q ss_pred HHHHHHHHc-----cCcEEEEEeCccccc---chhhh----------hhhhhcccchh-----hhhhcCCceEEeccCCc
Q 042597 90 AADISSILS-----RKKFVLLLDDIWERI---DLKEL----------VSLFLTTRSVD-----VCDQMDAEKLEVYSLAN 146 (693)
Q Consensus 90 ~~~l~~~l~-----~~~~LlvlDdv~~~~---~~~~~----------~~iliTtr~~~-----~~~~~~~~~~~l~~l~~ 146 (693)
...+.+... +++-++++||++... ....+ .++|+||.... +..++ ..+.+.+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~--~~i~~~~~~~ 167 (324)
T 3u61_B 90 RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC--RVITFGQPTD 167 (324)
T ss_dssp HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS--EEEECCCCCH
T ss_pred HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC--cEEEeCCCCH
Confidence 222222222 367899999999764 22222 45666665432 22222 2388889998
Q ss_pred hHHHHHHH-------HHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 042597 147 DEAWKLFQ-------EMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAM 193 (693)
Q Consensus 147 ~e~~~l~~-------~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l 193 (693)
++..+++. +.+.......++ .+..+.|++.++|.+..+......+
T Consensus 168 ~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 168 EDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88544332 222322222111 2788899999999886554444433
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=4e-07 Score=81.75 Aligned_cols=89 Identities=15% Similarity=0.214 Sum_probs=64.1
Q ss_pred CCccEEEEecccccc--chhhhhcCCccEEEEeccccchhhhcccccccccccccccCC--cCCCcceeecccccccccc
Q 042597 548 RSLNTVRVNGCKVKD--LTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHN--FFAQLEYLRILYGRNLKSI 623 (693)
Q Consensus 548 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l 623 (693)
.+|++|++++|.+++ +..+..+++|++|+|++|..+++... .. .... ..++|+.|++++|++++.-
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-------~~---L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-------ER---LSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-------HH---HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-------HH---HHhcccccCCCCEEEcCCCCcCCHH
Confidence 368999999997654 55677889999999999987766421 00 1111 2457999999999887653
Q ss_pred cc-CCCCCCCccEEEEccCCCCCC
Q 042597 624 YP-NPLPFPKLKKIQVLHCPELKK 646 (693)
Q Consensus 624 ~~-~~~~~~~L~~L~l~~c~~L~~ 646 (693)
.. .+..+++|+.|++++|++++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 21 245689999999999998885
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.27 E-value=8.4e-06 Score=83.53 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=98.2
Q ss_pred CcccchHHHHHHHHHHhhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
..++|.+...+.+.+.+.. .....+-|.|+|++|+|||++|+.+++.. .. ..+.++.......
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~---~~~~v~~~~l~~~- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSSDLVSK- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TC---EEEEEEHHHHHSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CC---CEEEeeHHHHhhh-
Confidence 5699999999999888731 11223568999999999999999999986 22 1223333211110
Q ss_pred hhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc-------------hhhh-------------hhhhhcccchh---
Q 042597 80 KWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID-------------LKEL-------------VSLFLTTRSVD--- 129 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~-------------~~~~-------------~~iliTtr~~~--- 129 (693)
.. .........+... ...+..+|+||+++.... ...+ ..||.||....
T Consensus 124 -~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 124 -WM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp -C----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred -hc-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 00 0111222222222 235788999999986531 1111 12343444332
Q ss_pred --hhhhcCC-ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc-chHHHHHHH
Q 042597 130 --VCDQMDA-EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL-PLALKTVGR 191 (693)
Q Consensus 130 --~~~~~~~-~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plal~~~~~ 191 (693)
+.. +. ..+.++..+.++..+++..++....... -......|++.+.|. +-.|..+..
T Consensus 202 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 22 2377888888898999988775433111 156678999999884 444554443
No 189
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=2.4e-06 Score=87.54 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=19.7
Q ss_pred hhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 427 DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 427 ~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
-+..+++|+.|++++|..+ .++. + .+++|++|.+..|.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSB
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCC
Confidence 3455566666666555222 2332 2 25666666666554
No 190
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=5.2e-06 Score=86.81 Aligned_cols=105 Identities=18% Similarity=0.341 Sum_probs=52.4
Q ss_pred CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCC------------C---
Q 042597 357 IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSST------------N--- 420 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~------------~--- 420 (693)
|.+|.+|+.+.+.. .++.+....|..+.+|+.+++..+ +..++ ..|.++.+|+.+.+..+ .
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 55566666666643 355555555666666666666543 22222 23444444444443321 0
Q ss_pred ------CCccC-hhhhcCCCCcEeccCCcccccccccccccCCCccccccccc
Q 042597 421 ------ITGLP-QDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLE 466 (693)
Q Consensus 421 ------i~~lp-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~ 466 (693)
+..+. ..+.++.+|+.+.+.++ +..++...+.++.+|+.+.+..
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 11111 12455666666666543 3445555566666666666543
No 191
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.24 E-value=1.5e-05 Score=81.10 Aligned_cols=163 Identities=20% Similarity=0.184 Sum_probs=94.8
Q ss_pred CcccchHHHHHHHHHHhhhc---CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCITDQ---EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
..++|++..++.+...+... .+....++|+|++|+||||||+.++... ...+. .... .... ..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg-~~~~-------~~ 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSG-PVLV-------KQ 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEET-TTCC-------SH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEec-hHhc-------CH
Confidence 56899988888887777542 2345789999999999999999999976 22111 0100 0000 01
Q ss_pred hHHHHHHHHHHccCcEEEEEeCcccccc--hhhh--------hhh---------------------hhcccchhhhhhc-
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERID--LKEL--------VSL---------------------FLTTRSVDVCDQM- 134 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~~--------~~i---------------------liTtr~~~~~~~~- 134 (693)
.+.. .+...+ .++.++++|+++.... .+.+ ..+ -.|++...+....
T Consensus 91 ~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~ 168 (334)
T 1in4_A 91 GDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR 168 (334)
T ss_dssp HHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH
T ss_pred HHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHH
Confidence 1111 111122 2345778898875421 1111 001 1233332221111
Q ss_pred -CCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 135 -DAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 135 -~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
... ...+++.+.++..+++.+.+....... -.+.+..|++.++|.|..+.-+..
T Consensus 169 sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 169 SRFGIILELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHHHHH
Confidence 111 278899999999999988775433222 257789999999999976554443
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.8e-05 Score=79.31 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=94.0
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.++.+++|.+.+.- +-...+=|.++||+|+|||.+|+++++.. ... .+.+...+...
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc-
Confidence 5688999999888877642 11345678899999999999999999987 222 22333322221
Q ss_pred hhhhhhchhHHHHHHHH-HHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~ 129 (693)
..... .+..+..+.. .-+..+++|++|+++.... +..+ ..||.||....
T Consensus 221 -k~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 -KYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp -SSTTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred -cccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 01111 1122222222 2245789999999985410 0011 13445554433
Q ss_pred h-----hhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 V-----CDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~-----~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
. ...-+.+. +.++.-+.++-.++|+.+........+.+ .+.|++.+.|.-
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 2 11112233 88888888888889987766544332222 467788888765
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=8.2e-06 Score=83.34 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=96.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEEeccCCchhhhhhchhH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD-VVIWAAVIGFSDDKKWKEKSLQD 88 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~~~~~ 88 (693)
..++|.+..++.+..++.. ++.+.+.++|++|+||||+|+.++... ... .+. .+.-++.... .......+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~--g~~~~~ll~Gp~G~GKTtla~~la~~l-~~~-~~~~~~~~~~~~~~-----~~~~~ir~ 95 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDE--GKLPHLLFYGPPGTGKTSTIVALAREI-YGK-NYSNMVLELNASDD-----RGIDVVRN 95 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHT--TCCCCEEEECSSSSSHHHHHHHHHHHH-HTT-SHHHHEEEECTTSC-----CSHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHH-cCC-CccceEEEEcCccc-----ccHHHHHH
Confidence 5689999999999888876 444448999999999999999999976 211 111 0111111100 00111111
Q ss_pred HHHHHHHH---HccCcEEEEEeCccccc--chhhh----------hhhhhcccch-hhhhhcC--CceEEeccCCchHHH
Q 042597 89 KAADISSI---LSRKKFVLLLDDIWERI--DLKEL----------VSLFLTTRSV-DVCDQMD--AEKLEVYSLANDEAW 150 (693)
Q Consensus 89 ~~~~l~~~---l~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr~~-~~~~~~~--~~~~~l~~l~~~e~~ 150 (693)
.+..+.+. ..+.+-++|+|+++... ....+ .+++++|... .+..... ...+.+.+++.++..
T Consensus 96 ~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~ 175 (340)
T 1sxj_C 96 QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIE 175 (340)
T ss_dssp HHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHH
Confidence 12222211 12346789999998653 22222 2344444332 2222111 123788999999999
Q ss_pred HHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 151 KLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
+.+.+.+.......+ ....+.|++.++|.+.-+.
T Consensus 176 ~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 176 RRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 988877643332222 5678889999999886443
No 194
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.18 E-value=1.4e-06 Score=76.67 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=55.9
Q ss_pred cccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHH
Q 042597 11 TVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKA 90 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~ 90 (693)
.+||++..+.++.+.+..-......|.|+|++|+|||++|+.+++...+....| + +++...... ....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~--------~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA--------PQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS--------SCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc--------hhhh
Confidence 579999999999998875334445688999999999999999988752222222 2 555443331 1111
Q ss_pred HHHHHHHccCcEEEEEeCccccc
Q 042597 91 ADISSILSRKKFVLLLDDIWERI 113 (693)
Q Consensus 91 ~~l~~~l~~~~~LlvlDdv~~~~ 113 (693)
..+.. ...-.++|||++...
T Consensus 70 ~~~~~---a~~g~l~ldei~~l~ 89 (145)
T 3n70_A 70 DFIAL---AQGGTLVLSHPEHLT 89 (145)
T ss_dssp HHHHH---HTTSCEEEECGGGSC
T ss_pred cHHHH---cCCcEEEEcChHHCC
Confidence 11111 133578999998763
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.15 E-value=1.8e-05 Score=83.75 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=94.9
Q ss_pred CcccchHHHHHHHHHHhhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.+...+.+.+.+.. .....+.+.|+|++|+|||++|+.+++.. .. ...+.++......
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~~~~~v~~~~l~~-- 206 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLVS-- 206 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--CCEEEEeHHHHHh--
Confidence 5689999999999887731 01234789999999999999999999875 11 1122232222111
Q ss_pred hhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc-------------hhhh-------------hhhhhcccchhhhh
Q 042597 80 KWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID-------------LKEL-------------VSLFLTTRSVDVCD 132 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~-------------~~~~-------------~~iliTtr~~~~~~ 132 (693)
...... ......+... -..++.+|+||+++.... ...+ ..||.||.......
T Consensus 207 ~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 207 KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp -----C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 000001 1111222222 235678999999986510 1111 12333444332111
Q ss_pred ---hcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc-chHHHHHHH
Q 042597 133 ---QMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL-PLALKTVGR 191 (693)
Q Consensus 133 ---~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plal~~~~~ 191 (693)
..+.. .+.++..+.++...++..++....... -......|++.+.|. +-.|..+..
T Consensus 286 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 286 SAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11222 377777788888888888765432111 146678899999885 444544443
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.11 E-value=2.4e-05 Score=78.24 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=93.5
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.++|.+..++++.+++.. .-...+.+.|+|++|+|||++|+.+++.. .. ..+.++..+...
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~~~~l~~- 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIKGPELLT- 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEECHHHHHH-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEEhHHHHh-
Confidence 5699999999888887753 11345679999999999999999999976 21 222332211110
Q ss_pred hhhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchhh
Q 042597 79 KKWKEKSLQDKAADISSILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVDV 130 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~~ 130 (693)
.............+.......+.++++|+++.... ...+ ..||.||.....
T Consensus 88 -~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 88 -MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp -HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred -hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 00011111122222333345678999999974310 1111 235555544322
Q ss_pred hh-h-c---CCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchH
Q 042597 131 CD-Q-M---DAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLA 185 (693)
Q Consensus 131 ~~-~-~---~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 185 (693)
.. . . ... .+.++..+.++-.+++..++.......+.+ ...+++.+.|.|-+
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 11 1 1 222 288888899998899887765433222222 34566667777643
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=2.3e-05 Score=81.25 Aligned_cols=161 Identities=17% Similarity=0.242 Sum_probs=92.4
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.++.+++|.+.+.- +-...+=|.++||+|+|||++|+++++.. ... .+.+...+...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 5578999988888877642 11345788999999999999999999987 221 22333322221
Q ss_pred hhhhhhchhHHHHHHH-HHHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADIS-SILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~ 129 (693)
...... ...+..+. ..-...+++|++|+++.... +..+ ..||.||....
T Consensus 254 -k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 -KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp -SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred -ccchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 011111 11222222 22245789999999974310 1111 13455554443
Q ss_pred hhhh--cC---Cce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 VCDQ--MD---AEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~~~~--~~---~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.... .+ .+. +.++..+.++-.++|..+........+.+ ...+++.+.|.-
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 3221 11 222 77777777788888887765543222222 467778887755
No 198
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3e-05 Score=80.17 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=92.9
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.++..++|.+.+.- +-...+=|.++|++|+|||++|+++++.. ... .+.+...++...
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~sk 282 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQK 282 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhcc
Confidence 5688999999888876531 12356788999999999999999999987 222 223333222210
Q ss_pred hhhhhhchhHHHHHH-HHHHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADI-SSILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~ 129 (693)
.... .+..+..+ ...-...+++|++|+++.... ...+ ..||.||-...
T Consensus 283 --~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 283 --YVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp --SSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred --cCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 0001 11122222 222245789999999974410 0001 12444554433
Q ss_pred hh-----hhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 VC-----DQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~~-----~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.. ..-+... +.++..+.++-.++|+.+........+.+ .+.|++.+.|.-
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 21 1112333 77877788888889987765543222222 467788888764
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.09 E-value=9e-06 Score=93.63 Aligned_cols=168 Identities=12% Similarity=0.155 Sum_probs=89.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~~ 85 (693)
+++|||++++..+...+.. .....+.|+|++|+|||++|+.+++....... .-..++++++..... .......
T Consensus 170 d~viGr~~~i~~l~~~l~~--~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-g~~~~g~ 246 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-GAKYRGE 246 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------C
T ss_pred cccCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-cCccchH
Confidence 6799999999999999876 44456789999999999999999998622110 112334444422221 0111112
Q ss_pred hhHHHHHHHHHHc--cCcEEEEEeCcccccc-------hhh---h--------hhhhhcccchhh-----hhhc--CCce
Q 042597 86 LQDKAADISSILS--RKKFVLLLDDIWERID-------LKE---L--------VSLFLTTRSVDV-----CDQM--DAEK 138 (693)
Q Consensus 86 ~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~-------~~~---~--------~~iliTtr~~~~-----~~~~--~~~~ 138 (693)
.......+.+.+. +++.+++||+++.... ++. + ..+|.+|..... .... ....
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~ 326 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQP 326 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCce
Confidence 2222333333332 3678999999986530 111 1 234444443321 1111 1123
Q ss_pred EEeccCCchHHHHHHHHHhhcccC-CCCCChHHHHHHHHHHhC
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTL-GSHTSIPELAETLARECS 180 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~-~~~~~~~~~~~~I~~~~~ 180 (693)
+.+++++.++..+++......... ....-.......+++.+.
T Consensus 327 i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 327 VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 899999999999998755432100 001111455666666653
No 200
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.04 E-value=1e-05 Score=86.19 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=77.6
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC--C-C-EEEEEEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN--F-D-VVIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~--f-~-~~~wv~~~~~~~~~~~~~~~ 85 (693)
+++|||+.+++.+...+.. .....+.|+|++|+|||++|+.++......... . . .++.+++.. ......
T Consensus 180 d~iiGr~~~i~~l~~~l~r--~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-----~~~g~~ 252 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-----KYRGEF 252 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcHHHHHHHHHHHhc--cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----cccchH
Confidence 5799999999999999876 344567899999999999999999986221100 0 1 112222210 000000
Q ss_pred hhHHHHHHHHHHccCcEEEEEeCcccccchhhh--------hhhhhcccchhh------hh--hcCCceEEeccCCchHH
Q 042597 86 LQDKAADISSILSRKKFVLLLDDIWERIDLKEL--------VSLFLTTRSVDV------CD--QMDAEKLEVYSLANDEA 149 (693)
Q Consensus 86 ~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~--------~~iliTtr~~~~------~~--~~~~~~~~l~~l~~~e~ 149 (693)
.......+...-+.++.++++| ........+ .++|.+|..... .. ......+.+.+.+.++.
T Consensus 253 e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~ 330 (468)
T 3pxg_A 253 EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330 (468)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHH
Confidence 1111222222334567899999 211111112 344444443321 01 11222389999999999
Q ss_pred HHHHHHHhhc
Q 042597 150 WKLFQEMVDR 159 (693)
Q Consensus 150 ~~l~~~~~~~ 159 (693)
.+++......
T Consensus 331 ~~iL~~~~~~ 340 (468)
T 3pxg_A 331 IQILQGLRDR 340 (468)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 201
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.01 E-value=2.6e-05 Score=81.45 Aligned_cols=272 Identities=17% Similarity=0.138 Sum_probs=147.1
Q ss_pred ccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCc-----------------
Q 042597 336 QEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNF----------------- 396 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~----------------- 396 (693)
..+.+++.+.+.. .+..+.. |.+|.+|+.+.+..+ ++.+....|..+..|+.+.+..+-
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 3456777777764 3555543 778888999888654 666777777777777766654320
Q ss_pred ---chhh-chHhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCc
Q 042597 397 ---FLSK-LRSGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 397 ---~~~~-~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
.... -...|.++.+|+.+.+..+ ++.++.. +.++.+|+.+.+..+ +..++...+.++..|+.+.+..+....
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i 222 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYL 222 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEE
T ss_pred cCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEe
Confidence 0001 1234677889999999754 4555543 778899999998765 667776667888888888765432110
Q ss_pred cccccC-------cccccCcchhHHhhccCCCCceeEEEeech-hhHhhhhccchhhhhhcccccceeEecccccccccc
Q 042597 472 VIEEEG-------NVLCDDAEPLMKELLGLKHLNVLSWSFRSS-LAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRF 543 (693)
Q Consensus 472 ~~~~~~-------~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~ 543 (693)
.-.... ..+.....-.-..+.+...|+...+..... .....+... ..++.+...... .....
T Consensus 223 ~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~---------~~l~~~~~~~~~-i~~~~ 292 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNC---------SGLKKVIYGSVI-VPEKT 292 (394)
T ss_dssp CTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTC---------TTCCEEEECSSE-ECTTT
T ss_pred ehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccc---------cccceeccCcee-ecccc
Confidence 000000 000000000001122223333333221100 000000000 223333222211 12233
Q ss_pred ccccCCccEEEEeccccccch--hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccc
Q 042597 544 RSGFRSLNTVRVNGCKVKDLT--WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLK 621 (693)
Q Consensus 544 ~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 621 (693)
+..+.+|+.+.+.++ ++.+. .+..+++|+.++|.++ ++.+.. ....++.+|+.+.+.. +++
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~------------~aF~~c~~L~~i~lp~--~l~ 355 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGK------------RSFRGCTSLSNINFPL--SLR 355 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT------------TTTTTCTTCCEECCCT--TCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhH------------HhccCCCCCCEEEECc--ccc
Confidence 456788888888766 44443 3455788998888643 333322 3455677888887742 355
Q ss_pred cccc-CCCCCCCccEEEEc
Q 042597 622 SIYP-NPLPFPKLKKIQVL 639 (693)
Q Consensus 622 ~l~~-~~~~~~~L~~L~l~ 639 (693)
.+.. ....+++|+.+++.
T Consensus 356 ~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECTTTBTTCTTCCEEEEE
T ss_pred EehHHHhhCCCCCCEEEEC
Confidence 5543 24567888888875
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=4.3e-05 Score=77.61 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc-------------------CCCCEEEEEEEeccC
Q 042597 16 ELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------------HNFDVVIWAAVIGFS 76 (693)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~ 76 (693)
++..+.+...+..+ .-.+.+.++|++|+|||++|+.+++...... .+++. .++...
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~--- 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPE--- 82 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCC---
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEecc---
Confidence 45566677766552 2345799999999999999999998762111 12332 222111
Q ss_pred CchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------hhhh-hcccchhhhhhcCCc-
Q 042597 77 DDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------VSLF-LTTRSVDVCDQMDAE- 137 (693)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~il-iTtr~~~~~~~~~~~- 137 (693)
........++ +..+.+.+ .+++-++|+|+++.... ...+ ..+| +|++...+.......
T Consensus 83 --~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc 159 (334)
T 1a5t_A 83 --KGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (334)
T ss_dssp --TTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred --ccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc
Confidence 0001111122 22333333 35677999999997632 2223 2334 444444443333222
Q ss_pred -eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 138 -KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 138 -~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
.+.+.+++.++..+++.+.. .. -.+.+..+++.++|.|..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~-~~-------~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV-TM-------SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC-CC-------CHHHHHHHHHHTTTCHHHHHHT
T ss_pred eeeeCCCCCHHHHHHHHHHhc-CC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 38999999999999988765 11 1566788999999999766443
No 203
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.00 E-value=2.5e-05 Score=88.94 Aligned_cols=146 Identities=15% Similarity=0.231 Sum_probs=85.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC---CCCEEEE-EEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH---NFDVVIW-AAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~---~f~~~~w-v~~~~~~~~~~~~~~~ 85 (693)
+.+|||+.+++.+.+.+.. .....+.|+|++|+|||++|+.++.......- .....+| ++...... .......
T Consensus 186 d~~iGr~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-~~~~~g~ 262 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-GTKYRGD 262 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-CCCCSSC
T ss_pred CCccCCHHHHHHHHHHHhc--cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-cccccch
Confidence 5789999999999999876 34566789999999999999999998622111 1122222 22211111 0011112
Q ss_pred hhHHHHHHHHHHc-cCcEEEEEeCccccc--------chhh---h--------hhhhhcccchhhhhh--------cCCc
Q 042597 86 LQDKAADISSILS-RKKFVLLLDDIWERI--------DLKE---L--------VSLFLTTRSVDVCDQ--------MDAE 137 (693)
Q Consensus 86 ~~~~~~~l~~~l~-~~~~LlvlDdv~~~~--------~~~~---~--------~~iliTtr~~~~~~~--------~~~~ 137 (693)
.......+.+.+. .+..+++|||++... ..+. + ..+|.+|........ ....
T Consensus 263 ~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 2333334444443 357899999998651 2111 1 334445444332111 1112
Q ss_pred eEEeccCCchHHHHHHHHHhh
Q 042597 138 KLEVYSLANDEAWKLFQEMVD 158 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~~ 158 (693)
.+.+...+.++..+++.....
T Consensus 343 ~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHH
Confidence 388999999999988876543
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.6e-05 Score=80.88 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=91.9
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.++..++|.+.+.- +-...+-|.+|||+|+|||.+|+++++.. ... .+.+...+....
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~~ 254 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQM 254 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCSS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhhc
Confidence 5688999999988877532 11345778999999999999999999987 221 223333222210
Q ss_pred hhhhhhchhHHHHHHHH-HHccCcEEEEEeCccccc-------c-----h----hhh-----------h-hhhhcccchh
Q 042597 79 KKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERI-------D-----L----KEL-----------V-SLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~-------~-----~----~~~-----------~-~iliTtr~~~ 129 (693)
.... ....+..+.. .-+..+++|++|+++... . . ..+ . .||.||....
T Consensus 255 --~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 255 --YIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp --CSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred --ccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch
Confidence 0001 1122222222 223578999999987430 0 0 011 1 2344555443
Q ss_pred hhhh-----cCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 VCDQ-----MDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~~~~-----~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.... .+.+. +.++..+.++-.++|+.+........+.+ .+.|++.+.|.-
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 3221 12222 77887788888888887765443222222 467788887754
No 205
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=4.9e-05 Score=78.70 Aligned_cols=161 Identities=19% Similarity=0.265 Sum_probs=88.2
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.++..++|.+.+.- +-...+=+.++||+|+|||++|+++++.. ..+ .+.+...+....
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~~ 245 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVHK 245 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCCS
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhcc
Confidence 5688999999888887642 11345668999999999999999999987 222 223333222210
Q ss_pred hhhhhhchhHHHHHH-HHHHccCcEEEEEeCccccc----------c------hhhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADI-SSILSRKKFVLLLDDIWERI----------D------LKEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~~~~----------~------~~~~------------~~iliTtr~~~ 129 (693)
..... ...+..+ ...-+..++++++|+++... + +..+ ..||.||....
T Consensus 246 --~~Ge~-e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 246 --YLGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp --SCSHH-HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred --ccchh-HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 00011 1112222 22224578999999986321 0 1111 13455554433
Q ss_pred h-----hhhcCCce-EEeccCCchH-HHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 V-----CDQMDAEK-LEVYSLANDE-AWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~-----~~~~~~~~-~~l~~l~~~e-~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
. ....+.+. +.++++...+ -.++|..+........+.+ .+.+++.+.|.-
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 2 11112222 6776665544 4556766655433222222 467777887754
No 206
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=5.3e-06 Score=74.41 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=64.6
Q ss_pred CCCccceeeccccccccccccccCCCCcccEEEccCCcchhh-chHhhhcc----ccccEEeeCCC-CCCc--cChhhhc
Q 042597 359 TCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSK-LRSGIANL----VSLHHLDLSST-NITG--LPQDLKA 430 (693)
Q Consensus 359 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~-~p~~~~~l----~~L~~L~l~~~-~i~~--lp~~~~~ 430 (693)
.-.+|+.|++++|.++...-..+..+++|+.|+|++|..++. --..+..+ ++|++|++++| +|+. + ..+.+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~ 137 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHH 137 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGG
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhc
Confidence 345799999999988877666678899999999999965542 23345553 47899999988 5776 3 24667
Q ss_pred CCCCcEeccCCcccccc
Q 042597 431 LEKLRYLNLDHAYKLSI 447 (693)
Q Consensus 431 l~~L~~L~l~~~~~l~~ 447 (693)
+++|++|++++|..++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 88888888888865554
No 207
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.9e-05 Score=78.46 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=91.5
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.++..++|.+.+.- +-...+=|.++|++|+|||.+|+++++.. ... .+.+...+...
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~s- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELIQ- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGCC-
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhhh-
Confidence 5578899988888877632 11345779999999999999999999987 222 22233322221
Q ss_pred hhhhhhchhHHHHHHHH-HHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~ 129 (693)
.... ..+..+..+.. .-+..+++|++|+++.... +..+ ..||.||-...
T Consensus 255 -k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 -KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred -ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 0001 11122222222 2245789999999874310 0011 13455555444
Q ss_pred hhhh--c---CCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 VCDQ--M---DAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~~~~--~---~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.... . +.+. +.++.-+.++-.++|..+........+.+ .+.|++.+.|.-
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 3222 1 1222 67777777777888887765443222222 467777887754
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.96 E-value=3.5e-05 Score=81.97 Aligned_cols=168 Identities=16% Similarity=0.147 Sum_probs=97.0
Q ss_pred CcccchHHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
..++|.+..++++.+++... ....+-|.|+|++|+|||++|+.+++.. .. ..+.+++......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPEIMSK 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEchHhhhh
Confidence 45899999999998887531 2445679999999999999999998875 22 2334444222110
Q ss_pred hhhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc-------------hhhh------------hhhhhcccchh-hhh
Q 042597 79 KKWKEKSLQDKAADISSILSRKKFVLLLDDIWERID-------------LKEL------------VSLFLTTRSVD-VCD 132 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------------~~~~------------~~iliTtr~~~-~~~ 132 (693)
............+....++++.+++|||++.... ...+ ..||.||.... +..
T Consensus 278 --~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 278 --LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp --CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred --hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 0001111122223333456778999999953311 0111 23444554432 211
Q ss_pred h----cCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc-chHHHHH
Q 042597 133 Q----MDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL-PLALKTV 189 (693)
Q Consensus 133 ~----~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plal~~~ 189 (693)
. ..... +.+...+.++-.+++..++.......+. ...++++.+.|. +-.+..+
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~----~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh----hHHHHHHHccCCcHHHHHHH
Confidence 1 12222 8888999999999998887654322222 245667777764 3334433
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.94 E-value=5.6e-05 Score=76.00 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHhhh------------cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITD------------QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~------------~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|++..++.+...+.. .......+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999887754 01234678899999999999999999876
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.90 E-value=0.00011 Score=71.64 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=89.3
Q ss_pred CcccchHHHHHHHHHHhhh---c-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD---Q-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.+...+++.+.+.. . ....+-+.|+|++|+||||+|+.+++.. ...| +.++.......
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~~- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVEM- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTTS-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHHH-
Confidence 6789999888877665432 1 0123458899999999999999999876 2222 33333222110
Q ss_pred hhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchhhh
Q 042597 80 KWKEKSLQDKAADISSILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVDVC 131 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~~~ 131 (693)
............+.........++++|+++.... ...+ ..||.||......
T Consensus 85 -~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 85 -FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp -CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred -hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 0001111112222333345678999999953310 1111 1345555443321
Q ss_pred -hh-c---CCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC-cchHHHHH
Q 042597 132 -DQ-M---DAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSG-LPLALKTV 189 (693)
Q Consensus 132 -~~-~---~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plal~~~ 189 (693)
.. . ... .+.++..+.++-.+++..+........+ .....++..+.| .+.-+..+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~----~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD----IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHTCTTCCHHHHHHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc----ccHHHHHHHcCCCCHHHHHHH
Confidence 11 1 112 2677777778888888776544322211 123456677777 56444433
No 211
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=5.5e-06 Score=84.84 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=52.7
Q ss_pred CCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhh--ccccccEEeeCCC--C------CCccChh
Q 042597 358 PTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIA--NLVSLHHLDLSST--N------ITGLPQD 427 (693)
Q Consensus 358 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~--~l~~L~~L~l~~~--~------i~~lp~~ 427 (693)
..+++|+.|.+.+|.-..+++ + .+++|+.|+|..|.........+. .+++|+.|+|+.+ . +..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 345666666666652112222 2 256677777766632222222333 5667777766421 1 2122222
Q ss_pred h--hcCCCCcEeccCCcccccccccccc--cCCCccccccccccCC
Q 042597 428 L--KALEKLRYLNLDHAYKLSIIPHKLK--SGFSKLEALRLLECGS 469 (693)
Q Consensus 428 ~--~~l~~L~~L~l~~~~~l~~~p~~~~--~~l~~L~~L~l~~~~~ 469 (693)
+ ..+++|++|++.+|......+..+. ..+++|++|+++.|.+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 2 2466777777766633222211111 2466777777766543
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=4.2e-06 Score=81.10 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=26.5
Q ss_pred CCCcccEEEccCCcchhh---chHhhhccccccEEeeCCCCCCccChhhhcCC--CCcEeccCCcc
Q 042597 383 PMSSLRVLALGRNFFLSK---LRSGIANLVSLHHLDLSSTNITGLPQDLKALE--KLRYLNLDHAY 443 (693)
Q Consensus 383 ~l~~L~~L~L~~~~~~~~---~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~ 443 (693)
.+++|++|+|++| .+.. +|..+..+++|++|+|++|+++++. .+..+. +|+.|++++|.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 3445555555555 2222 2233444555555555555555441 223232 45555555543
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=0.00023 Score=75.08 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=91.0
Q ss_pred CcccchHHHHHHHHHHhhh--c--------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD--Q--------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.++.++++.+.+.. . ....+-+.|+|++|+|||++|+.++... ...| +.++..+....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 5689999888777766532 0 0122458899999999999999999976 2222 23333222210
Q ss_pred hhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchhhh
Q 042597 80 KWKEKSLQDKAADISSILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVDVC 131 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~~~ 131 (693)
............+.......+.+++||+++.... +..+ ..||.||......
T Consensus 89 -~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 -FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred -HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 0000111122223334456789999999975311 1111 1344455444332
Q ss_pred hh--c---CCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 132 DQ--M---DAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 132 ~~--~---~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.. . ... .+.++..+.++-.+++..++.......+.+ ...+++.+.|..
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 21 1 222 277788888788888877665433221111 455788888877
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.81 E-value=3.6e-05 Score=75.43 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+||++..+.++.+.+.........|.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999888776532334678899999999999999999875
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=2e-05 Score=73.74 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=39.9
Q ss_pred CcccchH----HHHHHHHHHhhhcCC--CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 10 HTVVGQE----LLLYRVWRCITDQEK--NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 10 ~~~vGr~----~~~~~l~~~l~~~~~--~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+.|++.+ ..++.+..++..... ....+.|+|++|+|||++|+.+++.. ......++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL---AKRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH---HTTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEh
Confidence 5577654 344455556554222 12789999999999999999999987 233334566655
No 216
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.79 E-value=0.00053 Score=71.41 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=78.0
Q ss_pred ccceeeeccccchhhc--cCCCCCccceeecccc---ccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEE
Q 042597 340 GAKRVSLMDNRILRLL--EIPTCSRLITLLLYEN---WIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHL 414 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~---~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 414 (693)
.++.+.+..+ +..+. -|.+|.+|+.+.+..+ .++.+....|..+.+|+.+.+..+ ....-...|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3666777543 44454 3778889999888766 377777778888888888777655 222223456778888888
Q ss_pred eeCCCCCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCcccccccc
Q 042597 415 DLSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLL 465 (693)
Q Consensus 415 ~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~ 465 (693)
.+..+ ++.++. .+.++.+|+.+.+..+ +..+....+. ..+|+.+.+.
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip 190 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIP 190 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEEC
T ss_pred cccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEEC
Confidence 88643 444433 3667778888877653 5555555443 3456666654
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=1.3e-05 Score=73.84 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=64.4
Q ss_pred CCCCCccceeecccc-cccccc----ccccCCCCcccEEEccCCcchh----hchHhhhccccccEEeeCCCCCCc----
Q 042597 357 IPTCSRLITLLLYEN-WIEEIT----DGFFQPMSSLRVLALGRNFFLS----KLRSGIANLVSLHHLDLSSTNITG---- 423 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~l~~~~i~~---- 423 (693)
+...++|++|++++| .+.... ...+...++|++|+|++|.... .+...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455777778888777 665321 2234566778888888774322 233445556778888888877765
Q ss_pred -cChhhhcCCCCcEecc--CCcccccc-----cccccccCCCccccccccccC
Q 042597 424 -LPQDLKALEKLRYLNL--DHAYKLSI-----IPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 424 -lp~~~~~l~~L~~L~l--~~~~~l~~-----~p~~~~~~l~~L~~L~l~~~~ 468 (693)
+...+...++|++|++ ++| .+.. +... +...++|++|++.+|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 4445666667777777 555 2222 1111 2334556666665554
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.76 E-value=7.6e-05 Score=84.87 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=79.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC---CE-EEEEEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF---DV-VIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f---~~-~~wv~~~~~~~~~~~~~~~ 85 (693)
+++|||+++++.+...+.. .....+.++|++|+|||++|+.+++........+ .+ .+.++. . .......
T Consensus 180 d~iiG~~~~i~~l~~~l~~--~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----g-~~~~G~~ 252 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----G-TKYRGEF 252 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhC--CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----c-ccccchH
Confidence 5799999999999999977 4445688999999999999999999862211111 11 111222 0 0101111
Q ss_pred hhHHHHHHHHHHccCcEEEEEeCcccccchhhh--------hhhhhcccchhh--------hhhcCCceEEeccCCchHH
Q 042597 86 LQDKAADISSILSRKKFVLLLDDIWERIDLKEL--------VSLFLTTRSVDV--------CDQMDAEKLEVYSLANDEA 149 (693)
Q Consensus 86 ~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~--------~~iliTtr~~~~--------~~~~~~~~~~l~~l~~~e~ 149 (693)
.......+......++.++++|. .......+ .++|.||..... +-......+.++..+.++.
T Consensus 253 e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~ 330 (758)
T 3pxi_A 253 EDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330 (758)
T ss_dssp CTTHHHHHHHHHTCCCCEEEECC----------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 11222223333346788999992 11111111 344544443331 0011223489999999999
Q ss_pred HHHHHHHhhc
Q 042597 150 WKLFQEMVDR 159 (693)
Q Consensus 150 ~~l~~~~~~~ 159 (693)
.+++......
T Consensus 331 ~~il~~~~~~ 340 (758)
T 3pxi_A 331 IQILQGLRDR 340 (758)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 219
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.00035 Score=72.84 Aligned_cols=106 Identities=14% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCCC-ccceeeccccccccccccccCCCCcccEEEccCCc--chhhch-HhhhccccccEEeeCCCCCCccChh-hhcC
Q 042597 357 IPTCS-RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNF--FLSKLR-SGIANLVSLHHLDLSSTNITGLPQD-LKAL 431 (693)
Q Consensus 357 ~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~--~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l 431 (693)
|.+++ .|+.+.+..+ ++.+....|..+.+|+.+.+..+. .+..+. ..|.++.+|+.+.+..+ ++.++.. +.++
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 56664 5888888653 778888888899999999887651 244443 34677788887777643 5555443 6778
Q ss_pred CCCcEeccCCcccccccccccccCCCccccccccc
Q 042597 432 EKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLE 466 (693)
Q Consensus 432 ~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~ 466 (693)
.+|+.+.+..+ +..++...+..+.+|+.+.+..
T Consensus 137 ~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 137 EELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccce--eeeecccceecccccccccccc
Confidence 88888888653 5666666677788888877754
No 220
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.64 E-value=2.1e-05 Score=77.32 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=85.3
Q ss_pred CcccchHHHHHHHHHHhhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
..++|.++..+.+.+.+.. .....+-+.|+|++|+|||++|+.+++.. ...|- .+.........
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~~~ 84 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIEMF 84 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTTSC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHHhh
Confidence 6799998888777776541 01123347899999999999999999976 22221 11111111000
Q ss_pred -hhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc-----------------hhhh-------------hhhhhcccch
Q 042597 80 -KWKEKSLQDKAADISSILSRKKFVLLLDDIWERID-----------------LKEL-------------VSLFLTTRSV 128 (693)
Q Consensus 80 -~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------------~~~~-------------~~iliTtr~~ 128 (693)
.......... +......+..+++|||++.... ...+ ..||.||...
T Consensus 85 ~~~~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 85 VGLGASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp SSSCSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred cchHHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 0000111111 1222234568999999975421 1111 1244455444
Q ss_pred hh-----hhhcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 129 DV-----CDQMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 129 ~~-----~~~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.. ....... .+.++..+.++..+++...+.......+.. ...|++.+.|.|
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~ 218 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLA 218 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSC
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCC
Confidence 32 1111222 278888899999999987765432211111 233555566655
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.64 E-value=0.00026 Score=70.57 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++|++..+.++.+.+.........|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999998887643445678899999999999999999865
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.62 E-value=2.9e-05 Score=71.15 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=33.6
Q ss_pred Ccccc----hHHHHHHHHHHhhhcC-CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVG----QELLLYRVWRCITDQE-KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vG----r~~~~~~l~~~l~~~~-~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.|++ +...++.+.+++..-. .....++|+|++|+||||||+.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45665 3444445555544311 235789999999999999999999987
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.61 E-value=0.00013 Score=73.31 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhhhcC-------CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQE-------KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.++...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 468899999999988887521 123689999999999999999999976
No 224
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.58 E-value=3e-05 Score=71.32 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=81.0
Q ss_pred ccccceeeeccc-cchh-----h-ccCCCCCccceeecccccccccc----ccccCCCCcccEEEccCCcchhh----ch
Q 042597 338 WEGAKRVSLMDN-RILR-----L-LEIPTCSRLITLLLYENWIEEIT----DGFFQPMSSLRVLALGRNFFLSK----LR 402 (693)
Q Consensus 338 ~~~l~~l~l~~~-~~~~-----~-~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~~----~p 402 (693)
.+.++.|++.+| .+.. + ..+...++|++|+|++|.+.... ...+...+.|++|+|++|..... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 467899999998 6643 2 23567899999999999886533 22355678999999999943332 45
Q ss_pred HhhhccccccEEee--CCCCCCc-----cChhhhcCCCCcEeccCCc
Q 042597 403 SGIANLVSLHHLDL--SSTNITG-----LPQDLKALEKLRYLNLDHA 442 (693)
Q Consensus 403 ~~~~~l~~L~~L~l--~~~~i~~-----lp~~~~~l~~L~~L~l~~~ 442 (693)
..+...++|++|+| ++|.+.. +...+...++|++|++++|
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 66777889999999 8898876 4556777899999999998
No 225
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=0.00027 Score=70.28 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEEEEeccCCchhhhhhchhHHHHH
Q 042597 14 GQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ-HNFDVVIWAAVIGFSDDKKWKEKSLQDKAAD 92 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~ 92 (693)
|.++.++.+...+.. ++.+...++|++|+||||+|..+++...... .+.+. .+++..+ .....++. ..
T Consensus 1 g~~~~~~~L~~~i~~--~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~-------~~~~id~i-r~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEK--SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEG-------ENIGIDDI-RT 69 (305)
T ss_dssp ---CHHHHHHHHHHT--CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSS-------SCBCHHHH-HH
T ss_pred ChHHHHHHHHHHHHC--CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCc-------CCCCHHHH-HH
Confidence 455667777777766 3478899999999999999999987531111 24443 3332110 01111222 22
Q ss_pred HHHHH-----ccCcEEEEEeCccccc--chhhh----------hhhhh-cccchhhhhhcCCceEEeccCCchHHHHHHH
Q 042597 93 ISSIL-----SRKKFVLLLDDIWERI--DLKEL----------VSLFL-TTRSVDVCDQMDAEKLEVYSLANDEAWKLFQ 154 (693)
Q Consensus 93 l~~~l-----~~~~~LlvlDdv~~~~--~~~~~----------~~ili-Ttr~~~~~~~~~~~~~~l~~l~~~e~~~l~~ 154 (693)
+.+.. .+++-++|+|+++... ...++ ..+|+ |+....+........+++.+++.++..+.+.
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHH
T ss_pred HHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHHHHHH
Confidence 33333 2456689999998763 23333 34444 4444444333222279999999999999998
Q ss_pred HHh
Q 042597 155 EMV 157 (693)
Q Consensus 155 ~~~ 157 (693)
+.+
T Consensus 150 ~~~ 152 (305)
T 2gno_A 150 EKI 152 (305)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00016 Score=82.14 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=58.5
Q ss_pred CcccchHHHHHHHHHHhhhcC-------CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQE-------KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWK 82 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 82 (693)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.. ...-...+.+++.+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechhcccccccc
Confidence 458999999999888887521 122379999999999999999999986 2222344556664433211111
Q ss_pred hhchhHHHHHHHHHHc-cCcEEEEEeCcccc
Q 042597 83 EKSLQDKAADISSILS-RKKFVLLLDDIWER 112 (693)
Q Consensus 83 ~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~ 112 (693)
.. .+.+.++ ....+++||+++..
T Consensus 568 ---~~----~l~~~~~~~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 568 ---GG----QLTEKVRRKPYSVVLLDAIEKA 591 (758)
T ss_dssp ----------CHHHHHHCSSSEEEEECGGGS
T ss_pred ---cc----hhhHHHHhCCCeEEEEeCcccc
Confidence 11 1112222 23458999999866
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.54 E-value=0.00018 Score=80.39 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=91.6
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.++.+++|.+.+.- +-...+-|.++|++|+|||+||+++++.. ..+ .+.++..+...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~l~s- 276 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPEIMS- 276 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHHHHS-
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHHhhc-
Confidence 4467888888777776531 11345679999999999999999999986 222 23343322111
Q ss_pred hhhhhhchhHHHHHHHHHHccCcEEEEEeCccccc--------ch-----hhh------------hhhhhcccchhhhh-
Q 042597 79 KKWKEKSLQDKAADISSILSRKKFVLLLDDIWERI--------DL-----KEL------------VSLFLTTRSVDVCD- 132 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------~~-----~~~------------~~iliTtr~~~~~~- 132 (693)
.............+....+..+++|+||+++... +. .++ ..||.||.......
T Consensus 277 -k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 277 -KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp -SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred -ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 0001111222222333335678999999997541 11 111 12444444332211
Q ss_pred hc----CCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 133 QM----DAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 133 ~~----~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.. .... +.++..+.++-.++++.+........+. ....|++++.|.-
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCC
Confidence 11 2222 7888888888888888776543322222 2567888888765
No 228
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.53 E-value=7.3e-05 Score=72.41 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=55.2
Q ss_pred CCCccceeeccccccccccc--cccCCCCcccEEEccCCcchhhchHhhhccc--cccEEeeCCCCCCc-cCh-------
Q 042597 359 TCSRLITLLLYENWIEEITD--GFFQPMSSLRVLALGRNFFLSKLRSGIANLV--SLHHLDLSSTNITG-LPQ------- 426 (693)
Q Consensus 359 ~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~--~L~~L~l~~~~i~~-lp~------- 426 (693)
++++|++|+|++|.++.+.. ..+..+++|++|+|++| .+..+. .+..+. +|++|+|++|.+.. +|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46677788888887776542 44567888999999888 555542 355555 89999999998875 542
Q ss_pred hhhcCCCCcEec
Q 042597 427 DLKALEKLRYLN 438 (693)
Q Consensus 427 ~~~~l~~L~~L~ 438 (693)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 256788888886
No 229
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.0028 Score=65.48 Aligned_cols=124 Identities=12% Similarity=0.182 Sum_probs=68.4
Q ss_pred cccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhcccccc
Q 042597 335 VQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLH 412 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 412 (693)
.....+++.+.+.. .++.+.. |.+|.+|+.+.+.. .++.+....|..+ .|..+.+..+ +..++.......+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce--eeEeccceeccCCcc
Confidence 33445677776653 3444543 77888888888864 3677777777776 4666665443 344443332334788
Q ss_pred EEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccc
Q 042597 413 HLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLE 466 (693)
Q Consensus 413 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~ 466 (693)
.+.+..+ ++.+......-.+|+.+.+..+ +..+....+..+.+++.+.+..
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred cccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 8877654 3334333222234555544432 3444444455566666655543
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.45 E-value=0.0001 Score=64.77 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=47.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
...+|..... ...+..- ....++|+|+.|+|||||++.++... ... .+ .+++++..+....
T Consensus 18 ~f~~g~n~~~---~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~-g~-~~~~~~~~~~~~~----------- 78 (149)
T 2kjq_A 18 KFLGTENAEL---VYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQA-LEA-GK-NAAYIDAASMPLT----------- 78 (149)
T ss_dssp CCCSCCTHHH---HHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHH-HTT-TC-CEEEEETTTSCCC-----------
T ss_pred hcCcCccHHH---HHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHH-Hhc-CC-cEEEEcHHHhhHH-----------
Confidence 3445555433 3333332 45789999999999999999999987 221 22 2556655333321
Q ss_pred HHHHHHHHccCcEEEEEeCcccc
Q 042597 90 AADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 90 ~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
. +..+.-++||||+...
T Consensus 79 -----~-~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 79 -----D-AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp -----G-GGGGCSEEEEESTTCC
T ss_pred -----H-HHhCCCEEEEeCcccc
Confidence 1 1234558899999764
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.33 E-value=0.0012 Score=69.94 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=88.0
Q ss_pred CcccchHHHHHHHHHHhhh---c-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD---Q-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.++...++.+.... . -.-.+-+.|+|++|+|||+||+.++... .. ..+.++...+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 5689999887777665432 1 0112338999999999999999999876 22 233443322211
Q ss_pred hhhhhchhHHHHHHHHHHcc----CcEEEEEeCcccccc----------------hhhh------------hhhhhcccc
Q 042597 80 KWKEKSLQDKAADISSILSR----KKFVLLLDDIWERID----------------LKEL------------VSLFLTTRS 127 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~----~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~ 127 (693)
.........++..++. ...++++||++.... +..+ ..++.||..
T Consensus 103 ----~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 103 ----MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp ----SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSC
T ss_pred ----hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCC
Confidence 1112222334444443 347999999964310 1111 123445554
Q ss_pred hhhhhh-----cCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 128 VDVCDQ-----MDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 128 ~~~~~~-----~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
...... .... .+.++..+.++-.+++..++.......+ .....|++.+.|..
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS----STTHHHHTTSCSCC
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHhcCCCC
Confidence 443221 1222 2778888888888888776543221111 12455677777765
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.31 E-value=0.00093 Score=64.78 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=82.8
Q ss_pred CcccchHHHHHHHHHHhhh---c------C-CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD---Q------E-KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~------~-~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.++...++.+.... . + .-.+-+.|+|++|+||||+|+.++... . ...+.++......
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~---~~~i~~~~~~~~~-- 87 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGSDFVE-- 87 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHHHHHH--
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---C---CCEEEeeHHHHHH--
Confidence 5688988776666554321 0 0 111238999999999999999999876 2 1223333211100
Q ss_pred hhhhhchhHHHHHHHHHHc-cCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchhh
Q 042597 80 KWKEKSLQDKAADISSILS-RKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVDV 130 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~~ 130 (693)
............+.+... ....++++||++.... ...+ ..++.||.....
T Consensus 88 -~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 88 -MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp -SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred -HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 000001111222223222 3568999999963310 1111 123344444433
Q ss_pred hhh-----cCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 131 CDQ-----MDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 131 ~~~-----~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
... ..... +.++..+.++-.+++..++.......+ .....+++.+.|.-
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~----~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 221 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHTCTTCC
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc----cCHHHHHHHcCCCC
Confidence 221 12222 778888888888888766543221111 11345677777654
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.23 E-value=0.0014 Score=64.57 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=83.0
Q ss_pred CcccchHHHHHHHHHHhhhc---------C-CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITDQ---------E-KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~---------~-~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.++..+++.+....- + .-.+-+.|+|++|+||||||+.++... . ...+.++......
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~~~~~-- 111 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGSDFVE-- 111 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHHHHHH--
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHHHHHH--
Confidence 56899888776666554320 0 111238999999999999999999876 2 2233333211100
Q ss_pred hhhhhchhHHHHHHHHHH-ccCcEEEEEeCccccc------------chh----hh------------hhhhhcccchhh
Q 042597 80 KWKEKSLQDKAADISSIL-SRKKFVLLLDDIWERI------------DLK----EL------------VSLFLTTRSVDV 130 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~------------~~~----~~------------~~iliTtr~~~~ 130 (693)
.........+..+.+.. .....++++||++... ... .+ ..++.||.....
T Consensus 112 -~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 -MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp -STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred -HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 00000111122222222 2356899999996321 011 11 123334444333
Q ss_pred hh-----hcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 131 CD-----QMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 131 ~~-----~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.. ...... +.++..+.++-.+++..++.......+ .....++..+.|..
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~----~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 245 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHTCTTCC
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc----cCHHHHHHHcCCCC
Confidence 22 112222 778888888888888766543221111 12345677777755
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.0062 Score=59.49 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=76.5
Q ss_pred CcccchHHHHHHHHHHhhh---c-------C-CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD---Q-------E-KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~-------~-~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
..+.|.++..+++.+.+.. . + .-.+-++|+|++|+||||||+.++... .. ..+++...+....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 5678888888888775431 0 0 111229999999999999999999875 21 2344433222110
Q ss_pred hhhhhhchhHHHHHHHHHH-ccCcEEEEEeCcccccc-------------hhhh------------hhhhhcccchhhhh
Q 042597 79 KKWKEKSLQDKAADISSIL-SRKKFVLLLDDIWERID-------------LKEL------------VSLFLTTRSVDVCD 132 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~-------------~~~~------------~~iliTtr~~~~~~ 132 (693)
. .......+..+.+.. .....++++|+++.... ...+ ..++.+|....+..
T Consensus 84 ~---~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 Y---VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp T---THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred h---hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 0 001112222232222 34678999999975311 0111 12344554444322
Q ss_pred hc-----CCce-EEeccCCchHHHHHHHHHhh
Q 042597 133 QM-----DAEK-LEVYSLANDEAWKLFQEMVD 158 (693)
Q Consensus 133 ~~-----~~~~-~~l~~l~~~e~~~l~~~~~~ 158 (693)
.. .... +.++..+.++-.++++.+..
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 21 2223 77777788888888887664
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.13 E-value=0.00059 Score=72.39 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=57.1
Q ss_pred CcccchHHHHHHHHHHhh---hcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCIT---DQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~---~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.++|.++..+.+..++. ......+-+.++|++|+|||++|+.+++.. .... ..+.++.......... ..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l---~~~~-~~~~~~~~~~~~~~~~---~~ 109 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL---GSKV-PFCPMVGSEVYSTEIK---KT 109 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH---CTTS-CEEEEEGGGGCCSSSC---HH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh---CCCc-eEEEEeHHHHHHHhhh---hh
Confidence 679999998876655543 222233578999999999999999999987 2222 1223333332221110 11
Q ss_pred hHHHHHHHHH---HccCcEEEEEeCcccc
Q 042597 87 QDKAADISSI---LSRKKFVLLLDDIWER 112 (693)
Q Consensus 87 ~~~~~~l~~~---l~~~~~LlvlDdv~~~ 112 (693)
......+... -..++.++++|+++..
T Consensus 110 ~~~~~~f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 110 EVLMENFRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEechhhc
Confidence 1122223332 2346789999999754
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.10 E-value=0.0015 Score=64.74 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+.++|++|+|||++|+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688899999999999999999987
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.08 E-value=0.00078 Score=76.50 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=88.6
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.++|.++.++++.+++.. .-.....|.|+|++|+||||+|+.++... ... .+.++..+....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~---~i~v~~~~l~~~ 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPEIMSK 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCE---EEEEEHHHHSSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCc---EEEEEchHhhhh
Confidence 5589999999888888753 11345679999999999999999998875 222 233433222110
Q ss_pred hhhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc-------------hhhh------------hhhhhcccchh-hhh
Q 042597 79 KKWKEKSLQDKAADISSILSRKKFVLLLDDIWERID-------------LKEL------------VSLFLTTRSVD-VCD 132 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------------~~~~------------~~iliTtr~~~-~~~ 132 (693)
............+.........++++|+++.... ...+ ..+|.||.... +-.
T Consensus 278 --~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 --LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp --STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred --hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 0001111122223333345678999999964311 0111 12334444332 211
Q ss_pred hc----CCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 133 QM----DAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 133 ~~----~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.. .... +.+...+.++-.+++..++.......... ..++++.+.|..
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 11 1212 67777788888888877665433222222 344555565544
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.01 E-value=0.00048 Score=67.72 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=45.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE--eccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV--IGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIW 110 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 110 (693)
.+++.|+|++|+|||+||.+++... . . .++|++. .+... . .....+.....+.+.+...+ ++|+|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-~----~VlyIs~~~eE~v~--~-~~~~le~~l~~i~~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-G----KDKYATVRFGEPLS--G-YNTDFNVFVDDIARAMLQHR-VIVIDSLK 192 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-T----TSCCEEEEBSCSST--T-CBCCHHHHHHHHHHHHHHCS-EEEEECCT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-C----CEEEEEecchhhhh--h-hhcCHHHHHHHHHHHHhhCC-EEEEeccc
Confidence 3677899999999999999998852 1 1 2345555 11111 0 11344555566666676666 99999986
Q ss_pred cc
Q 042597 111 ER 112 (693)
Q Consensus 111 ~~ 112 (693)
..
T Consensus 193 aL 194 (331)
T 2vhj_A 193 NV 194 (331)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 239
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.98 E-value=0.0009 Score=68.75 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHHhhh-------------cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 11 TVVGQELLLYRVWRCITD-------------QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~-------------~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++|.+..++.+...+.. .......+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999998888831 11234678999999999999999999876
No 240
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.90 E-value=0.0002 Score=62.60 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|++..++++.+.+.........|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468999999999988876522333558899999999999999998765
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.87 E-value=0.0023 Score=66.06 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHhh----h------------------------cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCIT----D------------------------QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~----~------------------------~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.++.++.+...+. . .......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999988887772 0 01234578999999999999999999876
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.81 E-value=0.00088 Score=66.80 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=34.1
Q ss_pred Ccccc----hHHHHHHHHHHhhhcCC-CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVG----QELLLYRVWRCITDQEK-NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vG----r~~~~~~l~~~l~~~~~-~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.|++ +...++.+.+++..... ....+.|+|++|+|||+||..+++..
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44554 33344555566654222 25789999999999999999999987
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.77 E-value=0.0062 Score=69.18 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHhhhcC-------CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQE-------KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.++.++.+...+.... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899999988888776421 123579999999999999999999876
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.54 E-value=0.0042 Score=67.19 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=35.9
Q ss_pred ccchHHHHHHHHHHhhh----cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 12 VVGQELLLYRVWRCITD----QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|.++..+.+.+.+.. .......+.++|++|+||||+|+.++...
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 78888877777665432 11245789999999999999999999876
No 245
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.49 E-value=0.0037 Score=69.90 Aligned_cols=92 Identities=18% Similarity=0.262 Sum_probs=55.1
Q ss_pred CcccchHHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE--eccC
Q 042597 10 HTVVGQELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV--IGFS 76 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~--~~~~ 76 (693)
....|.++..+++.+.+.-. -...+-+.++|++|.|||.+|+++++.. ... ++.+ .+..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~~~l~ 548 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKGPELL 548 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEeccchhh
Confidence 45678888888887765421 1234567899999999999999999986 221 2222 1110
Q ss_pred CchhhhhhchhHHHHHHHHHH-ccCcEEEEEeCcccc
Q 042597 77 DDKKWKEKSLQDKAADISSIL-SRKKFVLLLDDIWER 112 (693)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~ 112 (693)
. ...... +..+..+.+.- +..+++|+||+++..
T Consensus 549 s--~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 549 T--MWFGES-EANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp T--TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred c--cccchH-HHHHHHHHHHHHHcCCceeechhhhHH
Confidence 0 011111 22233333333 457899999999854
No 246
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.40 E-value=0.011 Score=61.04 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCCCCCccChh-hhcCCCC
Q 042597 357 IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSSTNITGLPQD-LKALEKL 434 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 434 (693)
+.++..|+.+.+..+ ++.+....|..+.+|+.+.+..+ +..++ ..|.++.+|+.+.+..+.++.++.. +.++.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 566777777777654 66666666777778888777654 33333 3467778888888877777776543 6677888
Q ss_pred cEeccCCcccccccccccccCCCcccccccc
Q 042597 435 RYLNLDHAYKLSIIPHKLKSGFSKLEALRLL 465 (693)
Q Consensus 435 ~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~ 465 (693)
+.+.+..+ +..++...|.++.+|+.+.+.
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 88877643 666666667777778777764
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.36 E-value=0.0036 Score=58.40 Aligned_cols=41 Identities=22% Similarity=0.393 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 17 LLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+++|.+.+........+|+|.|+.|+|||||++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777766433566899999999999999999998876
No 248
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.30 E-value=0.005 Score=57.11 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHhhhc-CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 14 GQELLLYRVWRCITDQ-EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~~-~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|++.++++.+.+.+. .....+++|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3667788888888763 2456899999999999999999998865
No 249
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.92 E-value=0.023 Score=57.11 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 21 RVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 21 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++.+..- .+...++|+|++|+|||||++.+++..
T Consensus 163 raID~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 163 RVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHSCC-BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeeeee-cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344444331 345799999999999999999998865
No 250
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.91 E-value=0.0047 Score=62.40 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++|+++.++.+...+... ..+.++|++|+|||++|+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHh
Confidence 57899999999888888662 468899999999999999999876
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.86 E-value=0.017 Score=56.52 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=46.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh-------------hhhhchhHHHHHHHHHH----
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK-------------WKEKSLQDKAADISSIL---- 97 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-------------~~~~~~~~~~~~l~~~l---- 97 (693)
++-|+|++|+||||||.+++... .....-..++|++.-+...... ....+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 78999999999999999998876 2221135678988733222110 01112333312222232
Q ss_pred ccCcEEEEEeCcccc
Q 042597 98 SRKKFVLLLDDIWER 112 (693)
Q Consensus 98 ~~~~~LlvlDdv~~~ 112 (693)
+++.-++|+|.+...
T Consensus 109 ~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 109 RGEKVVVFIDSLGNL 123 (333)
T ss_dssp TTCCEEEEEECSTTC
T ss_pred ccCceEEEEeccccc
Confidence 346779999998654
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.84 E-value=0.013 Score=59.24 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=30.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
..+++.|+|++|+||||||.+++... . ..-..++|++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~--~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEeC
Confidence 35799999999999999999999876 2 22235788877
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.82 E-value=0.011 Score=59.63 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=46.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh-------------hhhhchhHHHHHHHHHHc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK-------------WKEKSLQDKAADISSILS 98 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-------------~~~~~~~~~~~~l~~~l~ 98 (693)
..+++.|+|++|+||||||..++... ...-..++|++......... ......++....+...++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~---~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA---QKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH---HHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45899999999999999999999876 22223467777632221100 011123333344444333
Q ss_pred -cCcEEEEEeCcccc
Q 042597 99 -RKKFVLLLDDIWER 112 (693)
Q Consensus 99 -~~~~LlvlDdv~~~ 112 (693)
.+.-++|+|.+...
T Consensus 137 ~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 137 SGVVDLIVVDSVAAL 151 (356)
T ss_dssp TSCCSEEEEECTTTC
T ss_pred hcCCCeEEehHhhhh
Confidence 34558888987544
No 254
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.79 E-value=0.011 Score=58.03 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhh----cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 16 ELLLYRVWRCITD----QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 16 ~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..++.|.+.+.. ...+..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455554433 34567899999999999999999998876
No 255
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.77 E-value=0.0067 Score=64.36 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+||+++.++.+...+.. ...|.|+|++|+|||++|+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~----~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH----TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhc----CCeeEeecCchHHHHHHHHHHHHHH
Confidence 5789999999888888766 2578999999999999999999876
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.70 E-value=0.019 Score=58.06 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=30.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
..+++.|+|++|+||||||.+++... ...-..++|++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~---~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEEC
Confidence 45799999999999999999999876 222245778876
No 257
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.68 E-value=0.0086 Score=59.55 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=29.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
++.++|+|+|-||+||||.+..++.-+. ..-.-+.-+++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~ 84 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGC 84 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEec
Confidence 4679999999999999999999988872 22223555666
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.67 E-value=0.012 Score=59.67 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=46.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh-------------hhhhchhHHHHHHHHHHc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK-------------WKEKSLQDKAADISSILS 98 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-------------~~~~~~~~~~~~l~~~l~ 98 (693)
...++.|+|++|+||||||..++... ...-..++|++.-....... ......++....+....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~---~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA---QKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH---HHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34689999999999999999999876 22224678887732222110 001123344444444443
Q ss_pred c-CcEEEEEeCccc
Q 042597 99 R-KKFVLLLDDIWE 111 (693)
Q Consensus 99 ~-~~~LlvlDdv~~ 111 (693)
. .--+||+|.+..
T Consensus 150 ~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 150 SGAIDVVVVDSVAA 163 (366)
T ss_dssp TTCCSEEEEECTTT
T ss_pred cCCCCEEEEeChHH
Confidence 3 344888888754
No 259
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.66 E-value=0.01 Score=68.17 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=38.4
Q ss_pred cccchHHHHHHHHHHhhhcC-------CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 11 TVVGQELLLYRVWRCITDQE-------KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~~~-------~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+||.+..++.+...+.... .....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999888876421 123689999999999999999999976
No 260
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.61 E-value=0.017 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.083 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..++.++|+.|+||||++..++++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345799999999999999999999987
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.59 E-value=0.0063 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|.|.|++|+||||+|+.+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999876
No 262
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.56 E-value=0.015 Score=55.63 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 14 GQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+....+.++............+|+|.|++|+||||+|+.+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444555555444333456789999999999999999998875
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.52 E-value=0.0071 Score=54.32 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|++|+||||+|+.++.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 264
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.43 E-value=0.019 Score=57.28 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=35.5
Q ss_pred ccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 12 VVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+.+..++++.+.+.. ..+....++|+|++|+||||+++.++...
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 35667777778777753 23456679999999999999999998876
No 265
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.38 E-value=0.013 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....|.|++..|.||||.|-..+.+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA 52 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARA 52 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34677777778899999999999987
No 266
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.29 E-value=0.0098 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|+|.|++|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.24 E-value=0.0098 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 268
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.23 E-value=0.0076 Score=61.35 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++|.+.....+...... .....+.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~--~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVD--PGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHC--GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhC--CCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4689998866654444332 223349999999999999999999876
No 269
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.23 E-value=0.13 Score=52.02 Aligned_cols=148 Identities=11% Similarity=-0.008 Sum_probs=91.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCc
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDI 109 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv 109 (693)
.-.++..++|+.|.||++.|..+.... . ...|+....+. ... ..+..+....+.. -+-+.+=++|+|++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~-~-~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVA-A-AQGFEEHHTFS---IDP-----NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHH-H-HHTCCEEEEEE---CCT-----TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHH-H-hCCCCeeEEEE---ecC-----CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 456799999999999999999998876 2 12343221111 111 1233444433322 23456678889998
Q ss_pred cc-c--cchhhh----------hhhhh-cccc------hhhhhhcCCc--eEEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 110 WE-R--IDLKEL----------VSLFL-TTRS------VDVCDQMDAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 110 ~~-~--~~~~~~----------~~ili-Ttr~------~~~~~~~~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
+. . .....+ ..+|+ |+.. ..+....... .++..+++.++....+.+.+...+...+
T Consensus 86 ~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~-- 163 (343)
T 1jr3_D 86 ENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELD-- 163 (343)
T ss_dssp SSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEEC--
T ss_pred CCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 76 3 333444 33444 4431 2344443332 3889999999999998888765443222
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHH
Q 042597 168 IPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
.+.++.+++.++|....+.....
T Consensus 164 -~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 164 -DAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp -HHHHHHHHHSSTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHhchHHHHHHHHHH
Confidence 67889999999998877765443
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.23 E-value=0.01 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.|+|.|++|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.16 E-value=0.012 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNN 55 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~ 55 (693)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 272
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.15 E-value=0.013 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|++|+||||+|+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999887
No 273
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.14 E-value=0.02 Score=52.17 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 17 LLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+..+..++..- .+...+.|+|++|+||||+|..+++..
T Consensus 43 ~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345555555432 233579999999999999999999986
No 274
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.13 E-value=0.012 Score=53.97 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|++|+||||+++.++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 35789999999999999999998763
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.09 E-value=0.024 Score=55.70 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....++.|.|++|+||||+|+.+..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998765
No 276
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.04 E-value=0.026 Score=57.16 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=48.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE-eccCCc-------hhhhhhchhHHHHHHHHHHccCcEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV-IGFSDD-------KKWKEKSLQDKAADISSILSRKKFV 103 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~-~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~L 103 (693)
...+++|+|+.|+||||+++.+...... .. -..++.+.- .+.... ..............+...|...+=+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~-~~-~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdv 199 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNN-TK-YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDI 199 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHH-HC-CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccC-CC-CcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCE
Confidence 3459999999999999999999876521 10 011111111 000000 0000011123445788888888889
Q ss_pred EEEeCcccccchh
Q 042597 104 LLLDDIWERIDLK 116 (693)
Q Consensus 104 lvlDdv~~~~~~~ 116 (693)
+++|+.-+.+.+.
T Consensus 200 illDEp~d~e~~~ 212 (356)
T 3jvv_A 200 ILVGEMRDLETIR 212 (356)
T ss_dssp EEESCCCSHHHHH
T ss_pred EecCCCCCHHHHH
Confidence 9999987654433
No 277
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.02 E-value=0.011 Score=53.25 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|+|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.02 E-value=0.014 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|.|.|++|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 279
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.02 E-value=0.013 Score=53.64 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|++|+||||+|+.++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.96 E-value=0.014 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 281
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.95 E-value=0.017 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.++|.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999887
No 282
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.94 E-value=0.014 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 283
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.92 E-value=0.029 Score=52.84 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 17 LLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+.+...+.. .+..+|+|+|.+|+|||||+.++....
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455555544 467889999999999999999999875
No 284
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.92 E-value=0.026 Score=56.07 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHhhhc--CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 13 VGQELLLYRVWRCITDQ--EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 13 vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|....+..+...+... ..+..+++|.|+.|+||||+|+.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444555555444442 3455699999999999999999998776
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.92 E-value=0.015 Score=54.17 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+||||+++.++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998876
No 286
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.89 E-value=0.015 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|++|+||||+|+.++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999976
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.87 E-value=0.0091 Score=54.17 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.|+|+||+|+|||||++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998765
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.86 E-value=0.013 Score=53.08 Aligned_cols=25 Identities=40% Similarity=0.384 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++|.|.|++|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 289
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.86 E-value=0.071 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+|.++|++|+||||++.+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.84 E-value=0.013 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 291
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.84 E-value=0.018 Score=53.27 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..+|+|.|++|+||||+|+.++...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998865
No 292
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.84 E-value=0.016 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++|.|++|+||||+|+.++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 293
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.83 E-value=0.016 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|+.|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998865
No 294
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.77 E-value=0.059 Score=55.99 Aligned_cols=37 Identities=35% Similarity=0.637 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+.++|+|++|+|||||+..+.... . ....+.++++.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~-~-~~~~~i~V~~~i 188 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI-A-QEHGGISVFAGV 188 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH-H-HHTCCCEEEEEE
T ss_pred CEEEEECCCCCCccHHHHHHHhhh-h-hccCcEEEEeee
Confidence 468999999999999999998875 2 122234455544
No 295
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.76 E-value=0.018 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
+...|+|+|++|+||||+|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999887
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.76 E-value=0.017 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+|+|.|++|+||||+|+.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998876
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.018 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998875
No 298
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.75 E-value=0.084 Score=53.00 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 21 RVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 21 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++++.+.-- .+-+.++|.|.+|+|||+|+..+++..
T Consensus 164 raID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 164 RLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHH
Confidence 455555431 234788999999999999999999875
No 299
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.74 E-value=0.15 Score=51.44 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=31.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~~~ 74 (693)
....++.|+|++|+||||||..++... .... .-..++|++...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCC
Confidence 345899999999999999999998864 1111 235678887743
No 300
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.74 E-value=0.028 Score=47.69 Aligned_cols=51 Identities=33% Similarity=0.450 Sum_probs=29.6
Q ss_pred EEEccCCcchh--hchHhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCc
Q 042597 389 VLALGRNFFLS--KLRSGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHA 442 (693)
Q Consensus 389 ~L~L~~~~~~~--~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 442 (693)
+++-+++ .++ .+|..+ ..+|++|+|++|+|+.+|.. +..+++|+.|+|++|
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5555555 444 555432 23566666666666666554 455666666666665
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.73 E-value=0.014 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 302
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.73 E-value=0.022 Score=51.29 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|++|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34789999999999999999998764
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.68 E-value=0.021 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|+|.|++|+||||+|+.++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 304
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.67 E-value=0.02 Score=55.20 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..+|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455789999999999999999998865
No 305
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.63 E-value=0.014 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|++|+||||+|+.++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999876
No 306
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.61 E-value=0.019 Score=53.11 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|.|+.|+||||+++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.60 E-value=0.015 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999999998875
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.59 E-value=0.019 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999976
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.58 E-value=0.021 Score=50.78 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++++|.|+.|+||||++.++...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999876
No 310
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.54 E-value=0.033 Score=47.18 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=15.5
Q ss_pred CCcEeccCCcccccccccccccCCCcccccccccc
Q 042597 433 KLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 433 ~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 467 (693)
+|++|+|++| .+..+|.+.+..+++|+.|++.+|
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 3444444444 444444444444444444444444
No 311
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.53 E-value=0.022 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..|+|.|++|+||||+|+.++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999987
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.52 E-value=0.023 Score=52.54 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
.+..+|+|+|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999774
No 313
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.52 E-value=0.02 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|.|++|+||||+++.++..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999765
No 314
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.031 Score=52.45 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 14 GQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+..+.+...+.. .+..+++|+|.+|+|||||+.++....
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455556665544 467899999999999999999998875
No 315
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.50 E-value=0.07 Score=54.18 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=30.0
Q ss_pred HHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 19 LYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 19 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++.+.+.....+..+|+|+|.+|+||||++.++....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334455554434567899999999999999999998876
No 316
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.49 E-value=0.022 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 317
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.47 E-value=0.075 Score=53.21 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=31.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcccc---CCCCEEEEEEEec
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQ---HNFDVVIWAAVIG 74 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~---~~f~~~~wv~~~~ 74 (693)
...++.|+|++|+||||||..++....... ..-..++|++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 347999999999999999999988651111 0134678887743
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.47 E-value=0.021 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|+|++|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 319
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.46 E-value=0.02 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||+|+.++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 320
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.46 E-value=0.033 Score=57.71 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHhhhc------------CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ------------EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++|.++..+.+...+... ....+.+.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999888887776321 0134568999999999999999999976
No 321
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.45 E-value=0.025 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....|+|.|++|+||||+|+.++...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.45 E-value=0.023 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
.+++|.|++|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999763
No 323
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.44 E-value=0.022 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998765
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.43 E-value=0.018 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 325
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.43 E-value=0.02 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVN 54 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~ 54 (693)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35799999999999999999754
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.42 E-value=0.023 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.42 E-value=0.022 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+...|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999999876
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.41 E-value=0.023 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|.|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.40 E-value=0.024 Score=52.68 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+|+|+|++|+||||+|+.+....
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998764
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.39 E-value=0.024 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|+.|+||||+++.++...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.38 E-value=0.024 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.38 E-value=0.027 Score=51.25 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.37 E-value=0.018 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++++|.|+.|+||||+++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998865
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.35 E-value=0.017 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=18.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|.|.|++|+||||+|+.++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998875
No 335
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.32 E-value=0.037 Score=53.26 Aligned_cols=27 Identities=41% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....++.|.|++|+||||+|+.+....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998876
No 336
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.31 E-value=0.025 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.27 E-value=0.026 Score=54.54 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|.|.|++|+||||+|+.++..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 338
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.27 E-value=0.025 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.26 E-value=0.023 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNN 55 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~ 55 (693)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 340
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.26 E-value=0.067 Score=53.36 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|+|+.|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999876
No 341
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.23 E-value=0.026 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.19 E-value=0.025 Score=52.48 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNN 55 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~ 55 (693)
.+++|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 343
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.16 E-value=0.028 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.14 E-value=0.026 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||+|+.++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 345
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.12 E-value=0.075 Score=52.87 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|++|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 346
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.12 E-value=0.081 Score=52.20 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhc------CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 16 ELLLYRVWRCITDQ------EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 16 ~~~~~~l~~~l~~~------~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++.+.+... .....+++|+|++|+||||++..++...
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34445566666432 1345799999999999999999999887
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.10 E-value=0.027 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 348
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.07 E-value=0.029 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 349
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.05 E-value=0.067 Score=51.14 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=26.8
Q ss_pred HHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 22 VWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 22 l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
+..|+.....+...+.++|++|+|||.+|.++++.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 45555443233467999999999999999999985
No 350
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.05 E-value=0.023 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 351
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.05 E-value=0.11 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++.|+|++|+|||+||..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998763
No 352
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.02 E-value=0.052 Score=51.96 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=27.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...++.|.|.+|+|||+||.+++.+. . ...-..++++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~-~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-A-EEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-H-HHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-H-HhcCCCceeecc
Confidence 35799999999999999999987653 1 222234555544
No 353
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.98 E-value=0.037 Score=48.74 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998865
No 354
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.97 E-value=0.028 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|+|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998875
No 355
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.95 E-value=0.048 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~ 56 (693)
.|+|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4788999999999999998764
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.94 E-value=0.031 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|+|.|+.|+||||+|+.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998875
No 357
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.91 E-value=0.037 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998876
No 358
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.85 E-value=0.029 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~ 56 (693)
+..|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999999886544
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.84 E-value=0.037 Score=52.93 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|+.|+||||+++.++...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998864
No 360
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.83 E-value=0.035 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|+|.|+.|+||||+++.++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999765
No 361
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.82 E-value=0.15 Score=52.01 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=36.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|......++.+.+.........|.|+|.+|.||+++|+.++...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 457888887777777665422333457799999999999999888764
No 362
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.79 E-value=0.034 Score=51.65 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|+.|+|||||++.+....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345799999999999999999998765
No 363
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.79 E-value=0.029 Score=52.73 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....|+|.|++|+||||+|+.++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999876
No 364
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.76 E-value=0.076 Score=53.05 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=30.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...++.|.|.+|+||||||..++..... +-..++|+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 4579999999999999999999998722 3346777766
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.76 E-value=0.037 Score=54.89 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|+.|+|||||++.++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456899999999999999999998876
No 366
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.73 E-value=0.077 Score=58.20 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+||.+..++.+...+.. ...+.|+|++|+||||+|+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~----g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ----KRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccC----CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4589999988888877765 2589999999999999999999976
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.71 E-value=0.038 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++.|.|++|+||+|.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 368
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.71 E-value=0.16 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34789999999999999999999876
No 369
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.65 E-value=0.045 Score=50.94 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|++|+||||+|+.++...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999876
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.55 E-value=0.032 Score=52.26 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998864
No 371
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.53 E-value=0.088 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++++|++|+||||++..++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999887
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.51 E-value=0.04 Score=51.53 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+|||||++.++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998865
No 373
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.50 E-value=0.043 Score=51.68 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|.|++|+||||+|+.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 374
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.49 E-value=0.042 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|+.|+||||+|+.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.48 E-value=0.022 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999877
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.46 E-value=0.045 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.45 E-value=0.086 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 378
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.42 E-value=0.049 Score=53.32 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|.|+.|+||||||..++.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998876
No 379
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.41 E-value=0.043 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.40 E-value=0.047 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNN 55 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~ 55 (693)
+..+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 381
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.39 E-value=0.053 Score=51.78 Aligned_cols=38 Identities=29% Similarity=0.242 Sum_probs=28.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...++.|.|++|+||||||.+++.... ..-..++|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEc
Confidence 347999999999999999999987652 22235666654
No 382
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.38 E-value=0.26 Score=51.04 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=30.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+-..++|.|.+|+|||+|+.++++... +.+-+.++++-+
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~i 190 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGV 190 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEE
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEEC
Confidence 347899999999999999999998751 334466677655
No 383
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.37 E-value=0.027 Score=55.32 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 384
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.36 E-value=0.095 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|+|++|+||||+++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999764
No 385
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.36 E-value=0.045 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 386
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.34 E-value=0.11 Score=53.89 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++++|++|+||||++.+++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 387
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.32 E-value=0.067 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.632 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.31 E-value=0.053 Score=50.73 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNN 55 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~ 55 (693)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.31 E-value=0.045 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..|+|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999876
No 390
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.19 E-value=0.16 Score=52.27 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
-..++|.|.+|+|||+|+.++++..
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHH
Confidence 3567899999999999999998875
No 391
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.18 E-value=0.068 Score=56.55 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 11 TVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....|.+..+.+.+..........+|.+.|+.|+||||+|+.++.++
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 34455555666666653322345789999999999999999999998
No 392
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.16 E-value=0.1 Score=49.54 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=29.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~ 72 (693)
...+++|+|++|+||||||..++... .... .-..++|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEEC
Confidence 35799999999999999999998853 1111 2356777765
No 393
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.16 E-value=0.043 Score=49.99 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++|+|+.|+||||+++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999876
No 394
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.14 E-value=0.049 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998743
No 395
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.13 E-value=0.076 Score=52.71 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=29.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.+.++|+|+|-||+||||+|..++..+.+ + -..++-+++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~ 77 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGC 77 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeC
Confidence 45688999999999999999999998832 2 224556665
No 396
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.13 E-value=0.071 Score=48.52 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=41.4
Q ss_pred CCCCccceeecccc-ccccc----cccccCCCCcccEEEccCCcchh----hchHhhhccccccEEeeCCCCCCc-----
Q 042597 358 PTCSRLITLLLYEN-WIEEI----TDGFFQPMSSLRVLALGRNFFLS----KLRSGIANLVSLHHLDLSSTNITG----- 423 (693)
Q Consensus 358 ~~~~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~l~~~~i~~----- 423 (693)
.+-+.|+.|+|.++ .+... ....+..-+.|+.|+|++|..-+ .+.+.+..-+.|+.|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666654 44321 12224455666666666663222 123334445566666666666654
Q ss_pred cChhhhcCCCCcEeccCC
Q 042597 424 LPQDLKALEKLRYLNLDH 441 (693)
Q Consensus 424 lp~~~~~l~~L~~L~l~~ 441 (693)
+-..+..-+.|+.|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 222233334455555543
No 397
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.12 E-value=0.053 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++|+|+.|+||||+|..++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 398
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.12 E-value=0.056 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+|+|.|+.|+||||||..++.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999876
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.11 E-value=0.055 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++++|+|+.|+||||++..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 400
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.11 E-value=0.046 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
...+++|.|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999843
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.10 E-value=0.056 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|+|.|++|+||||+|+.++.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999886
No 402
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.09 E-value=0.086 Score=64.49 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=47.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhh-------------hhchhHHHHHHHHHH
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWK-------------EKSLQDKAADISSIL 97 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~-------------~~~~~~~~~~l~~~l 97 (693)
.+.+.|.|+|++|+|||+||.+++... ..+-..++|+++.+........ ....++....++...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 356899999999999999999998876 2233346666663322211111 111224444444443
Q ss_pred c-cCcEEEEEeCcc
Q 042597 98 S-RKKFVLLLDDIW 110 (693)
Q Consensus 98 ~-~~~~LlvlDdv~ 110 (693)
+ .+.-++|+|++.
T Consensus 1502 r~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHTCCSEEEESCGG
T ss_pred hcCCCCEEEEcChh
Confidence 3 456799999985
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.07 E-value=0.053 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|.|++|+|||||++.++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999765
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.01 E-value=0.045 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 405
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.99 E-value=0.084 Score=52.88 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=44.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhh------chhHHHHHHHHHHccCcEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEK------SLQDKAADISSILSRKKFVLLL 106 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~Llvl 106 (693)
..+++|+|+.|+||||+++.++... . .-...+.+.-............ ........+...+...+=++++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~-~---~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI-P---KEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS-C---TTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-c---CCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 3689999999999999999998865 1 1234444432110000000000 1223344566677777778889
Q ss_pred eCcccc
Q 042597 107 DDIWER 112 (693)
Q Consensus 107 Ddv~~~ 112 (693)
|+....
T Consensus 247 dE~~~~ 252 (330)
T 2pt7_A 247 GELRSS 252 (330)
T ss_dssp CCCCST
T ss_pred cCCChH
Confidence 987653
No 406
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.87 E-value=0.059 Score=53.02 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|+|++|+||||++..++...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.85 E-value=0.12 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999999876
No 408
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.85 E-value=0.058 Score=51.26 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.. .+++|.|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999987754
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.85 E-value=0.039 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH-hhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVN-NNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~-~~~ 57 (693)
..+++|+|+.|+||||+++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 653
No 410
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.83 E-value=0.082 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
..+++|.|+.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988764
No 411
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.83 E-value=0.061 Score=48.71 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|.|.|+.|+||||+|.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999998875
No 412
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.83 E-value=0.063 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+|+|.|+.|+||||+++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998865
No 413
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.81 E-value=0.037 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++++|+|+.|+|||||++.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 414
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.74 E-value=0.013 Score=66.60 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|.++..+.+.+.+... -.....+.++|++|+|||++|+.++...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 45778888888887776421 0234568999999999999999999986
No 415
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.74 E-value=0.22 Score=51.76 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 16 ELLLYRVWRCITDQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 16 ~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++.+.+... ..+.++|.++|.+|+||||++.+++..+
T Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 76 KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455677776532 1346799999999999999999999987
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.73 E-value=0.083 Score=49.31 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=27.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...+++|+|++|+||||||..++. . . -..++|++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEEC
Confidence 457999999999999999999987 2 1 135666654
No 417
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.57 E-value=0.06 Score=51.00 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=26.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++.-. ....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 45789999999999999999887653 233455555
No 418
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.51 E-value=0.12 Score=51.45 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...++.|.|.+|+||||||..++..... ++ ..++|+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEEC
Confidence 4579999999999999999999987622 22 56777754
No 419
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.35 E-value=0.06 Score=50.57 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=26.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++.-. ....+.+++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 63 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD----APTEGKVFL 63 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 34689999999999999999887653 233455555
No 420
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.33 E-value=0.075 Score=55.25 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998765
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.31 E-value=0.092 Score=49.50 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....|+|.|++|+||||+++.++...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.31 E-value=0.17 Score=46.00 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.....|+|+|.+|+|||||+..+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998764
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.29 E-value=0.068 Score=50.68 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987754
No 424
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.27 E-value=0.08 Score=48.88 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 14 GQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++....+.+.+.... .+.-.|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~m~~~~~~--~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQ--GQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhc--CCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444444443333 345678999999999999999998653
No 425
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.23 E-value=0.092 Score=50.57 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|+|+.|+||||+++.++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456899999999999999999998865
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.23 E-value=0.08 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 427
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.18 E-value=0.4 Score=49.91 Aligned_cols=39 Identities=33% Similarity=0.587 Sum_probs=30.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+-..++|.|.+|+|||+|+.++.+.. .+.+-+.++++-+
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~i 202 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGV 202 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEE
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEc
Confidence 44789999999999999999999975 1334567777765
No 428
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.17 E-value=0.16 Score=48.89 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..++++.|.||+||||++..++...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999876
No 429
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.16 E-value=0.091 Score=54.10 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|+.|+|||||.+.+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998843
No 430
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.15 E-value=0.13 Score=49.77 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
++|+|.|-||+||||+|..++..+. ..-.-++-++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la---~~G~~VlliD~ 37 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH---AMGKTIMVVGC 37 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH---HCCCcEEEEcC
Confidence 5778889999999999999999882 22234556666
No 431
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.11 E-value=0.13 Score=46.60 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++.++|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999998888776
No 432
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.05 E-value=0.083 Score=51.91 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456899999999999999999988764
No 433
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.97 E-value=0.077 Score=51.19 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=26.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++.-. ....+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 45789999999999999999887653 233455555
No 434
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.96 E-value=0.075 Score=51.57 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=26.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEE
Confidence 34689999999999999999887653 334555555
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.96 E-value=0.086 Score=50.24 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999987754
No 436
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.94 E-value=0.051 Score=59.29 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=35.0
Q ss_pred CCcccchHHHHHHHHHHhhhcCC---------CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQEK---------NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~---------~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.++|.+.....+.-.+..+.. +...|.++|++|+|||++|+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 46789999876666544443210 01168999999999999999998875
No 437
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.90 E-value=0.079 Score=51.03 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=26.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 83 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIII 83 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEE
Confidence 44689999999999999999887653 233455555
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.87 E-value=0.15 Score=47.26 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.-.|.+.|.||+||||+|..++...
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3458889999999999999999987
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.87 E-value=0.089 Score=47.96 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.-.|+|.|++|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998764
No 440
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.80 E-value=0.067 Score=49.76 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|.|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987754
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.77 E-value=0.1 Score=49.40 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+|+|.|+.|+||||+++.++...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998865
No 442
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.77 E-value=0.092 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
...+++|.|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999998875
No 443
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.77 E-value=0.083 Score=50.22 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=26.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34689999999999999999887753 233455555
No 444
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.74 E-value=0.14 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|.+|+||||++..++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999887
No 445
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.73 E-value=0.11 Score=45.54 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..|+|.|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998763
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.73 E-value=0.082 Score=49.84 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987754
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.71 E-value=0.1 Score=49.67 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|+|.|..|+||||+++.++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999886
No 448
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.70 E-value=0.094 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
...+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 449
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.70 E-value=0.087 Score=50.56 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=26.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 44789999999999999999887653 233455555
No 450
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.69 E-value=0.084 Score=51.01 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=26.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++.-. ....+.+++
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 70 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL----SPSHGECHL 70 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS----CCSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEE
Confidence 34789999999999999999887754 223455555
No 451
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.63 E-value=0.1 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|.|+.|+||||||..++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999999886
No 452
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.61 E-value=0.087 Score=50.66 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=26.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++.-. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL----KADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 34689999999999999999887754 223455555
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.58 E-value=0.091 Score=50.60 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=26.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|+|+.|+|||||++.++.-. . . .+.+++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~-~-~G~I~i 78 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY---D-A-EGDIKI 78 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS---C-C-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC---C-C-CeEEEE
Confidence 34689999999999999999988764 2 2 566665
No 454
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.55 E-value=0.09 Score=50.19 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=26.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 34689999999999999999887754 233455555
No 455
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.55 E-value=0.087 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++.|+|++|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999999865
No 456
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.54 E-value=0.27 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+|+|+|.+|+||||++.+++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999877
No 457
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.47 E-value=0.094 Score=50.83 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=26.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY----QPTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEE
Confidence 44789999999999999999987754 233455555
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.47 E-value=0.12 Score=45.69 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 459
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.45 E-value=0.11 Score=47.66 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.-.|+|.|.+|+|||||++.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998763
No 460
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.43 E-value=0.16 Score=49.84 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=27.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.++|+|.|-||+||||+|..++..+.+ + -..++-+++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~-~--G~rVlliD~ 38 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE-M--GKKVMIVGC 38 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH-T--TCCEEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH-C--CCeEEEEec
Confidence 367888999999999999999998722 2 224555666
No 461
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.42 E-value=0.099 Score=51.56 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|.|++|+|||||+..++...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998876
No 462
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.35 E-value=0.21 Score=60.43 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhh-------------chhHHHHHHHHHHccC
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEK-------------SLQDKAADISSILSRK 100 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-------------~~~~~~~~l~~~l~~~ 100 (693)
.++.|+|++|+||||||.+++... ...-..++|++.-........... ..++....+++..+..
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~a---a~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~ 809 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCcHHHHHHHHHHH---HHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHcc
Q ss_pred cE-EEEEeCcc
Q 042597 101 KF-VLLLDDIW 110 (693)
Q Consensus 101 ~~-LlvlDdv~ 110 (693)
++ ++|+|.+.
T Consensus 810 ~~~lVVIDsLq 820 (1706)
T 3cmw_A 810 AVDVIVVDSVA 820 (1706)
T ss_dssp CCSEEEESCST
T ss_pred CCCEEEEechh
No 463
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.34 E-value=0.14 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|.|+.|+|||||++.++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45799999999999999999999887
No 464
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.30 E-value=0.12 Score=54.01 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+||||+++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 465
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.29 E-value=2 Score=39.60 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..-.|+|+|.+|+|||||+..+....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998753
No 466
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.29 E-value=0.1 Score=50.49 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=26.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++--. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~I~~ 66 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI----EPTSGDVLY 66 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEE
Confidence 44689999999999999999887653 233455555
No 467
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.29 E-value=0.099 Score=49.92 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|+.|+|||||++.++--.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987764
No 468
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.24 E-value=0.12 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
-.++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 469
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.24 E-value=0.35 Score=48.59 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..+++|+|.+|+||||++..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998765
No 470
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.23 E-value=0.18 Score=45.89 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=69.9
Q ss_pred cccceeeeccc-cchh-----h-ccCCCCCccceeecccccccccccc----ccCCCCcccEEEccCCcchh----hchH
Q 042597 339 EGAKRVSLMDN-RILR-----L-LEIPTCSRLITLLLYENWIEEITDG----FFQPMSSLRVLALGRNFFLS----KLRS 403 (693)
Q Consensus 339 ~~l~~l~l~~~-~~~~-----~-~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~~~~~~----~~p~ 403 (693)
..++.|.+.++ .+.. + ..+..-..|+.|+|++|.+...... .+..-+.|+.|+|++|.... .+.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 56788888875 5432 1 1255678999999999988754433 24566899999999994332 2344
Q ss_pred hhhccccccEEeeCCCC---CCc-----cChhhhcCCCCcEeccCCc
Q 042597 404 GIANLVSLHHLDLSSTN---ITG-----LPQDLKALEKLRYLNLDHA 442 (693)
Q Consensus 404 ~~~~l~~L~~L~l~~~~---i~~-----lp~~~~~l~~L~~L~l~~~ 442 (693)
.+..-+.|++|+|+++. +.. +...+..=+.|+.|+++.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 55566789999998753 332 3333455567888877655
No 471
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.19 E-value=0.56 Score=48.77 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=19.7
Q ss_pred CeeEEEEEcCCCCcHHHHH-HHHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTIL-TQVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla-~~~~~~ 56 (693)
+-..++|.|..|+|||++| ..+.+.
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh
Confidence 3467899999999999997 455553
No 472
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.17 E-value=0.092 Score=47.46 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~ 56 (693)
.|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 473
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.16 E-value=0.11 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
.+..+++|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999988764
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.11 E-value=0.23 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|+|.|+.|+||||+++.++..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 475
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.06 E-value=0.1 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999887754
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.05 E-value=0.23 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+-|+|-|..|+||||.++.++..+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999988
No 477
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.04 E-value=0.11 Score=50.66 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=26.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
...+++|.|+.|+|||||++.++... ....+.+++
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 80 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE----PATSGTVNL 80 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEE
Confidence 34689999999999999999887754 223455554
No 478
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.02 E-value=0.14 Score=46.07 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999998765
No 479
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.02 E-value=0.22 Score=49.98 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..+++|+|++|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 567899999999999999999998764
No 480
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.98 E-value=0.38 Score=49.85 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
-..++|.|.+|+|||+|+.++++..
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~ 176 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQA 176 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4667888999999999999999876
No 481
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.96 E-value=0.24 Score=52.20 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 15 QELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 15 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+.++.+..++.. ++ +.+.|.|++|+||||++..+...+
T Consensus 30 Q~~av~~~~~~i~~--~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKE--KK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHS--SS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444555555544 22 489999999999999999999887
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.94 E-value=0.18 Score=49.79 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++|.|+.|+|||||++.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 689999999999999999998 54
No 483
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.88 E-value=0.23 Score=53.34 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 11 TVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+.|.+..+.+.+..........+|.+.|++|+||||+|+.+....
T Consensus 350 ~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 34445555556666553222345789999999999999999999876
No 484
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.82 E-value=0.13 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.+|+|+.|+|||||+.+++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999997754
No 485
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.81 E-value=0.16 Score=44.69 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..-.|+|.|.+|+|||||+..+....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998754
No 486
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.79 E-value=0.37 Score=49.58 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
-..++|.|.+|+|||+|+.++++..
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH
Confidence 4567899999999999999998875
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.76 E-value=0.16 Score=45.84 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
+...|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 488
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.76 E-value=0.13 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 489
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.75 E-value=0.24 Score=44.71 Aligned_cols=35 Identities=34% Similarity=0.593 Sum_probs=26.5
Q ss_pred HHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 19 LYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 19 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
+..+.+ +.. .+.-.|+|+|.+|+|||||+..+...
T Consensus 5 ~~~~~~-~~~--~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFN--HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHT--TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcC--CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 333 45678999999999999999999854
No 490
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.62 E-value=0.13 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++.|+|++|+|||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999998865
No 491
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.61 E-value=0.13 Score=45.06 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|++.|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998754
No 492
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.61 E-value=0.17 Score=45.17 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+...|+|.|.+|+|||||+..+....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456789999999999999999998753
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.58 E-value=0.095 Score=50.65 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+...|+|.|+.|+||||+|+.++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999998875
No 494
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.53 E-value=0.39 Score=49.60 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE--eccCCch----hhhhhchhHHHHHHHHHHccCcEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV--IGFSDDK----KWKEKSLQDKAADISSILSRKKFVL 104 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~Ll 104 (693)
....+++|+|+.|+||||+++.+.... ... ...+++.- .+..... .............++..++...-++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l---~~~-~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i 240 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL---NSS-ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVV 240 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH---CCT-TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc---CCC-CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeE
Confidence 455799999999999999999998876 221 22222222 1110000 0000111233455667777777777
Q ss_pred EEeCcccc
Q 042597 105 LLDDIWER 112 (693)
Q Consensus 105 vlDdv~~~ 112 (693)
++.++.+.
T Consensus 241 ~vgEiRd~ 248 (418)
T 1p9r_A 241 MVGEIRDL 248 (418)
T ss_dssp EESCCCSH
T ss_pred EEcCcCCH
Confidence 77776543
No 495
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.52 E-value=0.67 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHH-HHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTILT-QVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~-~~~~~ 56 (693)
+-..++|.|.+|+|||+||. .+++.
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHh
Confidence 34678999999999999965 56554
No 496
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.47 E-value=0.13 Score=51.14 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
+.++++|+|+.|+||||+++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999865
No 497
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.40 E-value=0.17 Score=44.87 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..-.|+|.|.+|+|||||+..+....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCC
Confidence 34678999999999999999997654
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.37 E-value=0.17 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.....|+|+|++|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998864
No 499
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.36 E-value=0.13 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
..+++|.|+.|+|||||++.++..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988764
No 500
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.36 E-value=0.23 Score=51.23 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|++|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999987
Done!