BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042598
         (503 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DSA|A Chain A, Ternary Complex Of Bphk, A Bacterial Gst
 pdb|2DSA|B Chain B, Ternary Complex Of Bphk, A Bacterial Gst
 pdb|2DSA|C Chain C, Ternary Complex Of Bphk, A Bacterial Gst
 pdb|2DSA|D Chain D, Ternary Complex Of Bphk, A Bacterial Gst
          Length = 203

 Score = 33.1 bits (74), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 16  QPPHRFISPQSTYFSRFSPTHYLNFLSKPF--SSKPTSNPKTIDDPDQVIARSLS---GE 70
           Q P + ++P +  F R+    +LNF+S     S  P  NP + D+    + +SL+   G+
Sbjct: 76  QVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQ 135

Query: 71  LLENLEADPLPISQRLHL 88
           +   LE  P  +  +L +
Sbjct: 136 VARQLEHAPYLLGDQLSV 153


>pdb|2GDR|A Chain A, Crystal Structure Of A Bacterial Glutathione Transferase
 pdb|2GDR|B Chain B, Crystal Structure Of A Bacterial Glutathione Transferase
 pdb|2GDR|C Chain C, Crystal Structure Of A Bacterial Glutathione Transferase
 pdb|2GDR|D Chain D, Crystal Structure Of A Bacterial Glutathione Transferase
 pdb|2GDR|E Chain E, Crystal Structure Of A Bacterial Glutathione Transferase
 pdb|2GDR|F Chain F, Crystal Structure Of A Bacterial Glutathione Transferase
          Length = 202

 Score = 32.7 bits (73), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 16  QPPHRFISPQSTYFSRFSPTHYLNFLSKPF--SSKPTSNPKTIDDPDQVIARSLS---GE 70
           Q P + ++P +  F R+    +LNF+S     S  P  NP + D+    + +SL+   G+
Sbjct: 76  QVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSLNTRLGQ 135

Query: 71  LLENLEADPLPISQRLHL 88
           +   LE  P  +  +L +
Sbjct: 136 VARQLEHAPYLLGDQLSV 153


>pdb|2CSU|A Chain A, Crystal Structure Of Ph0766 From Pyrococcus Horikoshii Ot3
 pdb|2CSU|B Chain B, Crystal Structure Of Ph0766 From Pyrococcus Horikoshii Ot3
          Length = 457

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKK 462
           F K  + G+  D +  +L   ++ A    DKA AL+ E VRNG +      RV     KK
Sbjct: 176 FSKFISVGNXADVDFAEL--XEYLADTEEDKAIALYIEGVRNGKKFXEVAKRVTK---KK 230

Query: 463 PIAVKKGKKRET 474
           PI   K  K E+
Sbjct: 231 PIIALKAGKSES 242


>pdb|4EVF|A Chain A, Crystal Structure Of Apo Alpha-1 Giardin
 pdb|4EVH|A Chain A, Crystal Structure Of Calcium-Bound Alpha-1 Giardin
          Length = 295

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 416 ETYDLLMTKWCAHNRVDKANALFDEAVR--NGVEVKPKEYRVD-----PRYLKKPIA 465
           E + LLM KW AH RV +  +  DEA R     + K   Y +D     P    +PIA
Sbjct: 134 EDWCLLMEKWMAHERVSRPGSPEDEAQRLDQAFDQKNTAYLIDFFGTVPSAEYRPIA 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,043,023
Number of Sequences: 62578
Number of extensions: 640309
Number of successful extensions: 1304
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 10
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)