BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042598
(503 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FME4|PP438_ARATH Pentatricopeptide repeat-containing protein At5g60960,
mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2
SV=1
Length = 521
Score = 621 bits (1601), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/497 (62%), Positives = 372/497 (74%), Gaps = 11/497 (2%)
Query: 14 LQQPPHRFISPQSTYFSRFSPTH---YLNFLSKPFSSKPTSNPKTIDDPDQVIARSLSGE 70
LQ P R IS + FS P+ + F S+ FSS+ + +++D + IA S S E
Sbjct: 27 LQSQP-RIISSKP-LFSPLPPSRSSIFSTFPSRFFSSETNAESESLDSNE--IALSFSKE 82
Query: 71 LLENLEADPLPISQRLHLIFSHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHT 130
L N +A+ ISQR +L FSH+TP P L+ TLN SPEAGRA LGFN WL N+NFSHT
Sbjct: 83 LTGNPDAESQTISQRFNLSFSHITPNPDLILQTLNLSPEAGRAALGFNEWLDSNSNFSHT 142
Query: 131 DETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERME 190
DET+SFF DYFGRRKDFK + + + K + G KTL S IDRLVRAGRP QV FFE+ME
Sbjct: 143 DETVSFFVDYFGRRKDFKGMLEIISKYKGIAGGKTLESAIDRLVRAGRPKQVTDFFEKME 202
Query: 191 RDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLD 250
DYG KRDK+SL LVV+KLCE G+AS AEK+VK+TANEIFPD+ ICDLLI GWC+ KLD
Sbjct: 203 NDYGLKRDKESLTLVVKKLCEKGHASIAEKMVKNTANEIFPDENICDLLISGWCIAEKLD 262
Query: 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV 310
EA RLA EM RGGFE+GT AYN +LDCV KLCRKKDPF+L E EKVLL+ME+ GVPRN
Sbjct: 263 EATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNT 322
Query: 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370
ETFNVLI+NLCKIRR+E+A+ LF RMGEWGC P+ T+LVLI+SLYQAAR+GEGDEMID+
Sbjct: 323 ETFNVLINNLCKIRRTEEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDK 382
Query: 371 MKSAGYA--IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428
MKSAGY + KK+YY FL LCGIER+E AMSVF+ MK +G P +TYDLLM K CA+
Sbjct: 383 MKSAGYGELLNKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCAN 442
Query: 429 NRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPI--AVKKGKKRETLPEKMARKRRRL 486
N++ +AN L+ EA + G+ V PKEYRVDPR++KK KKRETLPEK ARK++RL
Sbjct: 443 NQLTRANGLYKEAAKKGIAVSPKEYRVDPRFMKKKTKEVDSNVKKRETLPEKTARKKKRL 502
Query: 487 KQIRLSFVKKPKRMMMR 503
KQI +SFVKKP M R
Sbjct: 503 KQINMSFVKKPHNKMRR 519
>sp|Q9FLJ6|PP439_ARATH Pentatricopeptide repeat-containing protein At5g61370,
mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2
SV=1
Length = 487
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/384 (24%), Positives = 190/384 (49%), Gaps = 9/384 (2%)
Query: 93 VTPTPSLVQSTLNF--SPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAI 150
V+P+ +LV + + + R +L F W ++ S D+ ++ +KD A+
Sbjct: 63 VSPSSNLVTQVIESCKNETSPRRLLRFFSWSCKSLGSSLHDKEFNYVLRVLAEKKDHTAM 122
Query: 151 HDFLVDNKE---VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVE 207
L D ++ + +T + + LV+ G+ +G F+ +++ + +D ++ ++
Sbjct: 123 QILLSDLRKENRAMDKQTFSIVAETLVKVGKEEDAIGIFKILDK-FSCPQDGFTVTAIIS 181
Query: 208 KLCENGYASYAEKLVKDTANEIFPDD-KICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
LC G+ A ++ + I ++ + L+ GW V + EA+R+ ++M G
Sbjct: 182 ALCSRGHVKRALGVMHHHKDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITP 241
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326
+N +L C+ + ++P L EA ++L+M + ++N+L+S L + RR
Sbjct: 242 DLFCFNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRV 301
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
++ ++ +M GC P+ ++ +++ LY R G+G++++D M G+ +K YY+
Sbjct: 302 RESCQILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDL 361
Query: 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
+ LCG+ER+ A+ +FEKMK + YDLL+ K C +K L++EA+ V
Sbjct: 362 IGVLCGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDV 421
Query: 447 EVKPKEYRVDPRYLK--KPIAVKK 468
+ +DP + KP+ +K+
Sbjct: 422 TLSCSISLLDPSVTEVFKPMKMKE 445
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 162/361 (44%), Gaps = 13/361 (3%)
Query: 91 SHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAI 150
S + P L+ L+ +AG F W T+ + H+ E + + F A+
Sbjct: 91 SGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAV 150
Query: 151 HDFLVD----NKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVV 206
+ + N E++ P+ + R A + + + M + YG + D+ ++
Sbjct: 151 WGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPK-YGLEPDEYVFGCLL 209
Query: 207 EKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
+ LC+NG A K+ +D + P+ + L+ GWC +GKL EAK + +M G E
Sbjct: 210 DALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEP 269
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI-RR 325
V + +L + + D + L + DM G NV + VLI LC+ +R
Sbjct: 270 DIVVFTNLLSGYAHAGKMADAYDL-------MNDMRKRGFEPNVNCYTVLIQALCRTEKR 322
Query: 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYE 385
++A+++F M +GC + T+ LI + + +G ++D M+ G + Y +
Sbjct: 323 MDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQ 382
Query: 386 FLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
+ E+ E+ + + EKMK G +PD Y++++ C V +A L++E NG
Sbjct: 383 IMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANG 442
Query: 446 V 446
+
Sbjct: 443 L 443
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 171/389 (43%), Gaps = 39/389 (10%)
Query: 91 SHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAI 150
+ V +P+L++ L AG L W F HT + + G+ K FK I
Sbjct: 88 ASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLI 147
Query: 151 HDFLVDN---KEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVE 207
LVD+ K++L +T A R RA + + +G F +ME ++GFK + +++
Sbjct: 148 WS-LVDDMKAKKLLSKETFALISRRYARARKVKEAIGAFHKME-EFGFKMESSDFNRMLD 205
Query: 208 KLCENGYASYAEKLVKDTANEIF-PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
L ++ A+K+ + F PD K +L++GW + L + REM GFE
Sbjct: 206 TLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEP 265
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSE---------------------AEKVLLD-MEY- 303
VAY I++ K + ++ R +E +EK L D +E+
Sbjct: 266 DVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFF 325
Query: 304 -----NGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358
+G P T+N L+ C +R EDA K M G PN T+ +++ L +
Sbjct: 326 ERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRM 385
Query: 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL-CGIERIEQAMSVFEKMKTDGHNPDSET 417
R E E+ M YE + R+ C ER++ A+ ++++MK G P
Sbjct: 386 QRSKEAYEVYQTMSCEPTV----STYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHM 441
Query: 418 YDLLMTKWCAHNRVDKANALFDEAVRNGV 446
+ L+T C N++D+A F+E + G+
Sbjct: 442 FSSLITALCHENKLDEACEYFNEMLDVGI 470
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 32/238 (13%)
Query: 248 KLDEAKRLAREMYRG-----GFELGTVAYNCILDCVSKLCR-----------------KK 285
KL A LA +++ GF+ T YN +++ + K+ + K
Sbjct: 103 KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSK 162
Query: 286 DPFRLDS----------EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYR 335
+ F L S EA ME G FN ++ L K R DA K+F +
Sbjct: 163 ETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDK 222
Query: 336 MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER 395
M + P+ ++ +L++ Q + DE+ MK G+ Y + C ++
Sbjct: 223 MKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKK 282
Query: 396 IEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
E+A+ F +M+ P + L+ + +++ A F+ + +G ++ Y
Sbjct: 283 YEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTY 340
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 12/360 (3%)
Query: 91 SHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKA- 149
S V P L++ LN +AG F W + + H+ E + + F A
Sbjct: 107 SGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAV 166
Query: 150 ---IHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVV 206
I + +N +++ P+ + R A + + + M + +GF+ D+ ++
Sbjct: 167 WGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPK-FGFEPDEYVFGCLL 225
Query: 207 EKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
+ LC++G A KL +D + + L+ GWC GK+ EAK + +M GFE
Sbjct: 226 DALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEP 285
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326
V Y +L + + D + L L DM G N + VLI LCK+ R
Sbjct: 286 DIVDYTNLLSGYANAGKMADAYDL-------LRDMRRRGFEPNANCYTVLIQALCKVDRM 338
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
E+A+K+F M + C + T+ L+ + ++ + ++D M G + Y
Sbjct: 339 EEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHI 398
Query: 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
+ E E+ + + EKM+ ++PD Y++++ C V +A L++E NG+
Sbjct: 399 MVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGL 458
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 12/188 (6%)
Query: 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352
+A +VL +M G + F L+ LCK +DA KLF M N F L+
Sbjct: 201 KAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDM-RMRFPVNLRYFTSLL 259
Query: 353 KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHN 412
+ ++ E ++ +M AG+ DY L+ ++ A + M+ G
Sbjct: 260 YGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFE 319
Query: 413 PDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY-----------RVDPRYLK 461
P++ Y +L+ C +R+++A +F E R E Y ++D Y+
Sbjct: 320 PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIV 379
Query: 462 KPIAVKKG 469
+KKG
Sbjct: 380 LDDMIKKG 387
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 110/522 (21%), Positives = 222/522 (42%), Gaps = 84/522 (16%)
Query: 22 ISPQSTYFSRFSPTHYLNFLSKPFSSKPTSNPKTIDDPDQ------VIA-----RSLSGE 70
++P S+ + FS K S+ P+T+D+ Q VI R +
Sbjct: 16 LNPSSSSIAIFST------FIKNLSTASEQLPETLDEYSQSEEIWNVIVGRDGDRDSEDD 69
Query: 71 LLENLEADPLPISQRLHLIFSHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHT 130
+ + L +D I +R++L + LV L+ + R+ LG W H+
Sbjct: 70 VFKRLSSDE--ICKRVNL-------SDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHS 120
Query: 131 DETLSFFTDYFGRRKDFKAIHDFL--VDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFER 188
+ D G+ K + + +F+ + +++ T+A + R AG + +G F+R
Sbjct: 121 SDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDR 180
Query: 189 MERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGK 248
+ ++G +++ +S+ L+++ LC+ A ++ + I P+ ++ I GWC +
Sbjct: 181 L-GEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANR 239
Query: 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPR 308
++EA +EM GF ++Y I+ C C++ + ++ ++L +ME NG P
Sbjct: 240 VEEALWTIQEMKGHGFRPCVISYTTIIRCY---CQQFEFIKV----YEMLSEMEANGSPP 292
Query: 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368
N T+ ++S+L + E+A+++ RM GC P+ + LI +L +A R+ E + +
Sbjct: 293 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF 352
Query: 369 D-RMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG-HNPDSETYD------- 419
M G +I Y + C + ++A+ + ++M++ NPD TY
Sbjct: 353 RVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCF 412
Query: 420 -----------------------------LLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450
L+ + C N + A LF+E +
Sbjct: 413 KRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQD----- 467
Query: 451 KEYRVDPRYLKKPIAVKKGKKRETLPEKMARKRRRLKQIRLS 492
+ PR+ + +++ KK+ + E R +K ++L+
Sbjct: 468 ----ITPRHRTCLLLLEEVKKK-NMHESAERIEHIMKTVKLT 504
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 161/361 (44%), Gaps = 13/361 (3%)
Query: 88 LIFSHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDF 147
L + ++ TP+L+ TL + L F +L + S T + + D GR + F
Sbjct: 62 LQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQF 121
Query: 148 KAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLV-- 205
+ +V+ + P+T + RL+ AG Q + F+ D + RLV
Sbjct: 122 DVVRQLIVEMDQT-SPETFLILVKRLIAAGLTRQAVRAFD----DAPCFLENRRFRLVEF 176
Query: 206 ---VEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG 262
++ LC+ GY A + + E D+K+ +LI GWC ++D A++ EM
Sbjct: 177 GFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIES 236
Query: 263 GFELGTVAYNCILDCVSKLCRKKDPFRLDSE---AEKVLLDMEYNGVPRNVETFNVLISN 319
G E V YN +L+ + + R + AEKV +M G+ +V +F++++
Sbjct: 237 GIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHM 296
Query: 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG 379
+ ++E + M G P T+ ++K L R+ E +E+++ M +G +
Sbjct: 297 YSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPS 356
Query: 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFD 439
Y F G + AM+++ KMK P ++TY++L+ + +++ ++D
Sbjct: 357 SATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIWD 416
Query: 440 E 440
+
Sbjct: 417 D 417
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 25/155 (16%)
Query: 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMID-- 369
+FN++I L ++R+ + +L M + + TFL+L+K L A + D
Sbjct: 107 SFNLIIDILGRVRQFDVVRQLIVEMDQ----TSPETFLILVKRLIAAGLTRQAVRAFDDA 162
Query: 370 ---------RMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
R+ G+ L LC + A+ VF + K + D + Y +
Sbjct: 163 PCFLENRRFRLVEFGF---------LLDTLCKYGYTKMAVGVFNERKEE-FGSDEKVYTI 212
Query: 421 LMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
L+ WC R+D A E + +G+E Y V
Sbjct: 213 LIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNV 247
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 165/394 (41%), Gaps = 37/394 (9%)
Query: 88 LIFSHVTP-TPSLVQSTLNFSPEAGRAILGFNHWL-TQNANFSHTDETLSFFTDYFGRRK 145
L+ + TP TP+LV S L G L F H+L + + H + D R
Sbjct: 46 LLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLH 105
Query: 146 DFKAIHDFLVDNKEV-LGP--KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSL 202
+ + + + +GP KT A +R AG+P + + F M ++G +D S
Sbjct: 106 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMH-EHGCFQDLASF 164
Query: 203 RLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG 262
+++ LC++ A +L + D ++++ GWC+ + +A + +EM
Sbjct: 165 NTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224
Query: 263 GFELGTVAYNCIL----------------------DC---VSKLCRKKDPFRLDSE---A 294
G YN +L DC V F + E A
Sbjct: 225 GINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRA 284
Query: 295 EKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKS 354
V +M GV +V T+N +I LCK E+A+ +F M G PN TT+ VLI+
Sbjct: 285 RNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRG 344
Query: 355 LYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD 414
L+ A G+E++ RM++ G + Y + +E+A+ +FEKM + P+
Sbjct: 345 LFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPN 404
Query: 415 SETYDLLMTKWCAHNRVDK---ANALFDEAVRNG 445
+TY++L++ R + A L E V G
Sbjct: 405 LDTYNILISGMFVRKRSEDMVVAGKLLLEMVERG 438
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 11/291 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERM-ERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVK 223
T S I L + G + + ++M RD + + ++ LC+ A +L +
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDC--SPNTVTYNTLISTLCKENQVEEATELAR 389
Query: 224 D-TANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282
T+ I PD + LI+G C+ A L EM G E YN ++D LC
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID---SLC 446
Query: 283 RKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH 342
K +LD EA +L ME +G R+V T+N LI CK ++ +A ++F M G
Sbjct: 447 SKG---KLD-EALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502
Query: 343 PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSV 402
N T+ LI L ++ RV + +++D+M G K Y LT C I++A +
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADI 562
Query: 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
+ M ++G PD TY L++ C RV+ A+ L G+ + P Y
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVK 223
KT + + + G L E+M ++G S+ ++V C+ G A ++
Sbjct: 225 KTFTTVMQGYIEEGDLDGALRIREQM-VEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQ 283
Query: 224 DTANE--IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKL 281
+ +N+ FPD + L+ G C G + A + M + G++ YN ++ + KL
Sbjct: 284 EMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL 343
Query: 282 CRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED------------- 328
K EA +VL M N T+N LIS LCK + E+
Sbjct: 344 GEVK-------EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396
Query: 329 ----------------------AIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDE 366
A++LF M GC P+E T+ +LI SL ++ E
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456
Query: 367 MIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426
M+ +M+ +G A Y + C + +A +F++M+ G + +S TY+ L+ C
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLC 516
Query: 427 AHNRVDKANALFDEAVRNGVEVKPKEY 453
RV+ A L D+ + G KP +Y
Sbjct: 517 KSRRVEDAAQLMDQMIMEG--QKPDKY 541
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 143/346 (41%), Gaps = 56/346 (16%)
Query: 125 ANFSHTDETLS---FFTDYFGRRKD---FKAIHDFLVDNKEVLGPKTLASCIDRLVRAGR 178
A F DE LS + D FG + D + + + LVD + +LV
Sbjct: 129 AQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSL-----------KLVEISH 177
Query: 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICD 237
+ +G K D + ++++ LC A +++D + + PD+K
Sbjct: 178 AKMSV---------WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228
Query: 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSE---- 293
+++G+ +G LD A R+ +M G V+ N I+ K R +D E
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288
Query: 294 -------------------------AEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED 328
A +++ M G +V T+N +IS LCK+ ++
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348
Query: 329 AIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388
A+++ +M C PN T+ LI +L + +V E E+ + S G + +
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408
Query: 389 RLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKA 434
LC AM +FE+M++ G PD TY++L+ C+ ++D+A
Sbjct: 409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA 454
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 73/178 (41%), Gaps = 36/178 (20%)
Query: 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL---------------FY--- 334
+ +K+L DM+ + TF +LI + + ++ + + FY
Sbjct: 101 DMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRM 160
Query: 335 ------------------RMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY 376
+M WG P+ +TF VLIK+L +A ++ M++ M S G
Sbjct: 161 LNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGL 220
Query: 377 AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKA 434
+K + + ++ A+ + E+M G + + + ++++ +C RV+ A
Sbjct: 221 VPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 147/338 (43%), Gaps = 13/338 (3%)
Query: 123 QNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEV-LGPK--TLASCIDRLVRAGRP 179
QN SH T S F +YF RR L ++ GP TL S ++ R
Sbjct: 102 QNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRI 161
Query: 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV-KDTANEIFPDDKICDL 238
++ + ++M + G++ D + +V L ++ AS A LV + PD
Sbjct: 162 SEAVALVDQM-VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 220
Query: 239 LIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVL 298
+I G C G+ D A L +M +G E V YN I+D + K D F L ++
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNK----- 275
Query: 299 LDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358
ME G+ +V T+N LIS LC R DA +L M E +P+ F LI + +
Sbjct: 276 --METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKE 333
Query: 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR-LCGIERIEQAMSVFEKMKTDGHNPDSET 417
++ E +++ D M + + Y L + C +R+E+ M VF +M G ++ T
Sbjct: 334 GKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 393
Query: 418 YDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
Y L+ + D A +F + V +GV Y +
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNI 431
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 10/280 (3%)
Query: 168 SCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN 227
+ ID L + F +ME G K D + ++ LC G S A +L+ D
Sbjct: 255 TIIDGLCKYKHMDDAFDLFNKMETK-GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLE 313
Query: 228 E-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL-GTVAYNCILDCVSKLCRKK 285
+ I PD + LI + +GKL EA++L EM + VAYN + + C+ K
Sbjct: 314 KNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTL---IKGFCKYK 370
Query: 286 DPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345
R++ E +V +M G+ N T+ LI + R ++A +F +M G HP+
Sbjct: 371 ---RVE-EGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDI 426
Query: 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405
T+ +L+ L V + + M+ + Y + LC ++E +F
Sbjct: 427 MTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCS 486
Query: 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
+ G P+ TY +M+ +C ++A+ALF E +G
Sbjct: 487 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 9/220 (4%)
Query: 205 VVEKLCENGYASYAEKLVKDT--ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG 262
+++ + G AEKL + + FPD + LIKG+C +++E + REM +
Sbjct: 326 LIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQR 385
Query: 263 GFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK 322
G TV Y + + + +D A+ V M +GV ++ T+N+L+ LC
Sbjct: 386 GLVGNTVTYTTL---IHGFFQARDC----DNAQMVFKQMVSDGVHPDIMTYNILLDGLCN 438
Query: 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKD 382
E A+ +F M + + T+ +I++L +A +V +G ++ + G
Sbjct: 439 NGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVT 498
Query: 383 YYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLM 422
Y ++ C E+A ++F +MK DG P+S TY+ L+
Sbjct: 499 YTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLI 538
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307
K D L +M G Y+ ++ CR+ S A +L M G
Sbjct: 90 KFDLVISLGEQMQNLGISHNLYTYSIF---INYFCRRSQL----SLALAILGKMMKLGYG 142
Query: 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367
++ T N L++ C R +A+ L +M E G P+ TF L+ L+Q + E +
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202
Query: 368 IDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427
++RM G Y + LC + A+++ KM+ D Y+ ++ C
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262
Query: 428 HNRVDKANALFDEAVRNGVEVKPKEYRVDP 457
+ +D A LF++ G +KP + +P
Sbjct: 263 YKHMDDAFDLFNKMETKG--IKPDVFTYNP 290
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 41/225 (18%)
Query: 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239
T + GFF+ RD D+ ++V +++ +G + PD ++L
Sbjct: 396 TLIHGFFQ--------ARDCDNAQMVFKQMVSDG---------------VHPDIMTYNIL 432
Query: 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLL 299
+ G C +G ++ A + M + +L V Y +++ + K + +D + L
Sbjct: 433 LDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDL-------FC 485
Query: 300 DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA 359
+ GV NV T+ ++S C+ E+A LF M E G PN T+ LI+ A
Sbjct: 486 SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIR-----A 540
Query: 360 RVGEGDE-----MIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399
R+ +GDE +I M+S G+A G + +T + R++++
Sbjct: 541 RLRDGDEAASAELIKEMRSCGFA-GDASTFGLVTNMLHDGRLDKS 584
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 2/173 (1%)
Query: 276 DCVSKLCRKK-DPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFY 334
DC L RK +LD +A + DM + ++ F+ L+S + K+ + + I L
Sbjct: 41 DCRENLSRKVLQDLKLD-DAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGE 99
Query: 335 RMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE 394
+M G N T+ + I + +++ ++ +M GY L C
Sbjct: 100 QMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 159
Query: 395 RIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
RI +A+++ ++M G+ PD+ T+ L+ HN+ +A AL + V G +
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ 212
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 162/369 (43%), Gaps = 19/369 (5%)
Query: 123 QNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEV-LG--PKTLA--SCIDRLVRAG 177
++ +H+ TLS + F R + K + F K + LG P T+ + ++ L
Sbjct: 115 ESKGIAHSIYTLSIMINCFCRCR--KLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLEC 172
Query: 178 RPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-PDDKIC 236
R ++ L +RM + G K +L +V LC NG S A L+ F P++
Sbjct: 173 RVSEALELVDRM-VEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231
Query: 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEK 296
++ C G+ A L R+M +L V Y+ I+D + K + F L +E
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE--- 288
Query: 297 VLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356
ME G ++ T+N LI C R +D KL M + PN TF VLI S
Sbjct: 289 ----MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFV 344
Query: 357 QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE 416
+ ++ E D+++ M G A Y + C R+E+A+ + + M + G +PD
Sbjct: 345 KEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 417 TYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLP 476
T+++L+ +C NR+D LF E GV Y + + ++ KK L
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKK---LF 461
Query: 477 EKMARKRRR 485
++M +R R
Sbjct: 462 QEMVSRRVR 470
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 145/315 (46%), Gaps = 9/315 (2%)
Query: 142 GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS 201
G+ D + D +V+ T ++ + ++G+ + +ME + K D
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVK 265
Query: 202 LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMY 260
++++ LC++G A L + + F D I + LI G+C G+ D+ +L R+M
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 261 RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320
+ V ++ ++D K + + EA+++L +M G+ N T+N LI
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLR-------EADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380
CK R E+AI++ M GC P+ TF +LI +A R+ +G E+ M G
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 438
Query: 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
Y + C ++E A +F++M + PD +Y +L+ C + ++KA +F +
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 498
Query: 441 AVRNGVEVKPKEYRV 455
++ +E+ Y +
Sbjct: 499 IEKSKMELDIGIYMI 513
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 9/287 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-E 228
ID L + G F ME GFK D + ++ C G KL++D +
Sbjct: 270 IDGLCKDGSLDNAFNLFNEMEIK-GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
I P+ +LI + +GKL EA +L +EM + G T+ YN ++D C++
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID---GFCKEN--- 382
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
RL+ + V L M G ++ TFN+LI+ CK R +D ++LF M G N T+
Sbjct: 383 RLEEAIQMVDL-MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTY 441
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
L++ Q+ ++ ++ M S Y L LC +E+A+ +F K++
Sbjct: 442 NTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
D Y +++ C ++VD A LF GV++ + Y +
Sbjct: 502 SKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNI 548
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 7/199 (3%)
Query: 255 LAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFN 314
L ++M G + +++C + CRK S A + + G + FN
Sbjct: 110 LCKQMESKGIAHSIYTLSIMINCFCR-CRKL------SYAFSTMGKIMKLGYEPDTVIFN 162
Query: 315 VLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374
L++ LC R +A++L RM E G P T L+ L +V + +IDRM
Sbjct: 163 TLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVET 222
Query: 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKA 434
G+ + Y L +C + AM + KM+ D+ Y +++ C +D A
Sbjct: 223 GFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNA 282
Query: 435 NALFDEAVRNGVEVKPKEY 453
LF+E G + Y
Sbjct: 283 FNLFNEMEIKGFKADIITY 301
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 67/155 (43%)
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
ME G+ ++ T +++I+ C+ R+ A ++ + G P+ F L+ L R
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECR 173
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
V E E++DRM G+ + LC ++ A+ + ++M G P+ TY
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233
Query: 421 LMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
++ C + A L + +++ +Y +
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 7/184 (3%)
Query: 239 LIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVL 298
L++G+C GKL+ AK+L +EM V+Y +LD LC + +A ++
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLD---GLCDNGEL----EKALEIF 496
Query: 299 LDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358
+E + + ++ + ++I +C + +DA LF + G + + ++I L +
Sbjct: 497 GKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRK 556
Query: 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETY 418
+ + D + +M G+A + Y + G + A + E+MK+ G D T
Sbjct: 557 DSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTV 616
Query: 419 DLLM 422
+++
Sbjct: 617 KMVI 620
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 7/187 (3%)
Query: 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMID 369
V FN L S + K ++ E + L +M G + T ++I + ++ +
Sbjct: 88 VIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMG 147
Query: 370 RMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429
++ GY + L LC R+ +A+ + ++M GH P T + L+ C +
Sbjct: 148 KIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNG 207
Query: 430 RVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRET--LPEKMARKRRRLK 487
+V A L D V G + P E P + K G+ L KM + +L
Sbjct: 208 KVSDAVVLIDRMVETGFQ--PNEVTYGPVL---NVMCKSGQTALAMELLRKMEERNIKLD 262
Query: 488 QIRLSFV 494
++ S +
Sbjct: 263 AVKYSII 269
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 140/317 (44%), Gaps = 17/317 (5%)
Query: 141 FGRRKDFKAIHDFLVDNKEV-LGPK--TLASCIDRLVRAGRPTQVLGFFERME---RDYG 194
GR D ++D ++ EV + P TL I+ L ++ R + L FE+M D G
Sbjct: 304 LGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDG 363
Query: 195 --FKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE--IFPDDKICDLLIKGWCVDGKLD 250
K D +++ LC+ G AE+L+ E P+ + LI G+C GKL+
Sbjct: 364 NVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLE 423
Query: 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV 310
AK + M + V N I V +CR + A +DME GV NV
Sbjct: 424 TAKEVVSRMKEDEIKPNVVTVNTI---VGGMCRHHGL----NMAVVFFMDMEKEGVKGNV 476
Query: 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370
T+ LI C + E A+ + +M E GC P+ + LI L Q R + ++++
Sbjct: 477 VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEK 536
Query: 371 MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430
+K G+++ Y + C E+ + M+ +G PDS TY+ L++ + H
Sbjct: 537 LKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKD 596
Query: 431 VDKANALFDEAVRNGVE 447
+ + ++ +G++
Sbjct: 597 FESVERMMEQMREDGLD 613
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 121/294 (41%), Gaps = 28/294 (9%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYA----EK 220
T+ + + + R + FF ME++ G K + + ++ C A EK
Sbjct: 443 TVNTIVGGMCRHHGLNMAVVFFMDMEKE-GVKGNVVTYMTLIHACCSVSNVEKAMYWYEK 501
Query: 221 LVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280
+++ + PD KI LI G C + +A R+ ++ GGF L +AYN + +
Sbjct: 502 MLEAGCS---PDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNML---IGL 555
Query: 281 LCRKKDPFRLDSEAEKV---LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMG 337
C K + AEKV L DME G + T+N LIS K + E ++ +M
Sbjct: 556 FCDKNN-------AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMR 608
Query: 338 EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI----GKKDYYEFLTRLCGI 393
E G P TT+ +I + VGE DE + K G Y + +
Sbjct: 609 EDGLDPTVTTYGAVIDAY---CSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKL 665
Query: 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
QA+S+ E+MK P+ ETY+ L + + L DE V E
Sbjct: 666 GNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCE 719
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 239 LIKGWCVDGKLDEAKRLAREM-YRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
+I +C G+LDEA +L ++M TV YN +++ SKL L E
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE---- 677
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
M+ V NVET+N L L + + E +KL M E C PN+ T +L++
Sbjct: 678 ---MKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILME---- 730
Query: 358 AARVGEGDEMIDRMK-SAGYAIG 379
R+ DE++ K GY++
Sbjct: 731 --RLSGSDELVKLRKFMQGYSVA 751
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 140/317 (44%), Gaps = 17/317 (5%)
Query: 141 FGRRKDFKAIHDFLVDNKEV-LGPK--TLASCIDRLVRAGRPTQVLGFFERME---RDYG 194
GR D ++D ++ EV + P TL I+ L ++ R + L FE+M D G
Sbjct: 304 LGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRTDDG 363
Query: 195 --FKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE--IFPDDKICDLLIKGWCVDGKLD 250
K D +++ LC+ G AE+L+ E P+ + LI G+C GKL+
Sbjct: 364 NVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLE 423
Query: 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV 310
AK + M + V N I V +CR + A +DME GV NV
Sbjct: 424 TAKEVVSRMKEDEIKPNVVTVNTI---VGGMCRHHGL----NMAVVFFMDMEKEGVKGNV 476
Query: 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370
T+ LI C + E A+ + +M E GC P+ + LI L Q R + ++++
Sbjct: 477 VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEK 536
Query: 371 MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430
+K G+++ Y + C E+ + M+ +G PDS TY+ L++ + H
Sbjct: 537 LKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKD 596
Query: 431 VDKANALFDEAVRNGVE 447
+ + ++ +G++
Sbjct: 597 FESVERMMEQMREDGLD 613
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 120/291 (41%), Gaps = 22/291 (7%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYA----EK 220
T+ + + + R + FF ME++ G K + + ++ C A EK
Sbjct: 443 TVNTIVGGMCRHHGLNMAVVFFMDMEKE-GVKGNVVTYMTLIHACCSVSNVEKAMYWYEK 501
Query: 221 LVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280
+++ + PD KI LI G C + +A R+ ++ GGF L +AYN + +
Sbjct: 502 MLEAGCS---PDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNML---IGL 555
Query: 281 LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG 340
C K + + ++L DME G + T+N LIS K + E ++ +M E G
Sbjct: 556 FCDKNNT----EKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDG 611
Query: 341 CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI----GKKDYYEFLTRLCGIERI 396
P TT+ +I + VGE DE + K G Y + +
Sbjct: 612 LDPTVTTYGAVIDAY---CSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNF 668
Query: 397 EQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
QA+S+ E+MK P+ ETY+ L + + L DE V E
Sbjct: 669 GQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCE 719
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 239 LIKGWCVDGKLDEAKRLAREM-YRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
+I +C G+LDEA +L ++M TV YN +++ SKL L E
Sbjct: 622 VIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEE---- 677
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
M+ V NVET+N L L + + E +KL M E C PN+ T +L++
Sbjct: 678 ---MKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILME---- 730
Query: 358 AARVGEGDEMIDRMK-SAGYAIG 379
R+ DE++ K GY++
Sbjct: 731 --RLSGSDELVKLRKFMQGYSVA 751
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 130/284 (45%), Gaps = 24/284 (8%)
Query: 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD-T 225
+ ID L + G L F++ME +YG + D +V LC +G A+ L++ T
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQME-NYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMT 239
Query: 226 ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN------CILDCVS 279
+I PD + LI + +GK +A+ L EM R Y C+ CV
Sbjct: 240 KRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVD 299
Query: 280 KLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339
EA ++ ME G +V + LI+ CK ++ +DA+K+FY M +
Sbjct: 300 -------------EARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346
Query: 340 GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399
G N T+ LI+ Q + E+ M S G + Y L LC ++++A
Sbjct: 347 GLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKA 406
Query: 400 MSVFEKMK---TDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
+ +FE M+ DG P+ TY++L+ C + +++KA +F++
Sbjct: 407 LMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFED 450
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 129/322 (40%), Gaps = 14/322 (4%)
Query: 139 DYFGRRKDFKAIHDFLVDNKEVLG-PKTLASC---IDRLVRAGRPTQVLGFFERMERDYG 194
+ + K F + + L D+ +++G L +C ++ ++ +P F +M + G
Sbjct: 80 NVIAKMKKFDVVIN-LCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMK-LG 137
Query: 195 FKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAK 253
F+ D + ++ C A +V I PD + +I C +G ++ A
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL 197
Query: 254 RLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETF 313
L +M G V Y +++ + R +D A+ +L M + +V TF
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD-------ADSLLRGMTKRKIKPDVITF 250
Query: 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373
N LI K + DA +L+ M PN T+ LI V E +M M++
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310
Query: 374 AGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDK 433
G Y + C ++++ AM +F +M G ++ TY L+ + + +
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNV 370
Query: 434 ANALFDEAVRNGVEVKPKEYRV 455
A +F V GV + Y V
Sbjct: 371 AQEVFSHMVSRGVPPNIRTYNV 392
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 124/287 (43%), Gaps = 12/287 (4%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + ID V+ G+ + M R + + ++ C G A ++
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIR-MSIAPNIFTYTSLINGFCMEGCVDEARQMFYL 307
Query: 225 TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ FPD LI G+C K+D+A ++ EM + G T+ Y ++ ++ +
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW---G 340
+ A++V M GVP N+ T+NVL+ LC + + A+ +F M + G
Sbjct: 368 P-------NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG 420
Query: 341 CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAM 400
PN T+ VL+ L ++ + + + M+ IG Y + +C +++ A+
Sbjct: 421 VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
++F + + G P+ TY +++ +A+ LF + +GV
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 59/134 (44%)
Query: 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372
F L++ + K+++ + I L + G + T +L+ Q+++ + +M
Sbjct: 75 FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134
Query: 373 SAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVD 432
G+ + + C R+E+AMS+ +M G PD Y ++ C + V+
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVN 194
Query: 433 KANALFDEAVRNGV 446
A +LFD+ G+
Sbjct: 195 YALSLFDQMENYGI 208
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 109/438 (24%), Positives = 177/438 (40%), Gaps = 45/438 (10%)
Query: 86 LHLIFSHVTPT---PSLVQSTLNFSPEAGRAI-----LGFNHWLTQNANFSH-TDETLSF 136
L L FS + + PS+V+ + I L F +W T ++ H + +
Sbjct: 97 LSLDFSQIETSQVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNE 156
Query: 137 FTDYFGRRKDFK-AIH--DFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDY 193
D G+ + F A H D + + +T I R VRAG ++ + F RME DY
Sbjct: 157 MIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME-DY 215
Query: 194 GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAK 253
G DK + +V+ L AS A+ + PD + L++GWC G++ EA+
Sbjct: 216 GCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAE 275
Query: 254 RLAREMYRGGFELGTVAYNCILDCV---SKLCRKKDPFR--LDS---------------- 292
++ +EM G E Y+ ++D + ++ R D F LDS
Sbjct: 276 KVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVH 335
Query: 293 ----EAEKVLL---DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345
EKVL M+ G + T+N LI C+ E+A+K+ M + C N
Sbjct: 336 VKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNA 395
Query: 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405
+TF + + + + V M +M A Y + G + + + + ++
Sbjct: 396 STFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKE 455
Query: 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKE-YRVDPRYLKKPI 464
M P+ TY LL+T +C + A LF E V Y + L++
Sbjct: 456 MDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRR-- 513
Query: 465 AVKKGKKRETLPEKMARK 482
+ KK E L EKM +K
Sbjct: 514 -AGQLKKHEELVEKMIQK 530
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 169/397 (42%), Gaps = 50/397 (12%)
Query: 93 VTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHD 152
V T SLV L GF W + H+ T + D G+ ++F + +
Sbjct: 128 VVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWE 187
Query: 153 FLVD---NKE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVE 207
+ + N+E ++ T++ + RL ++G+ + + F ME+ YG K D ++ +++
Sbjct: 188 LVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMD 247
Query: 208 KLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG 267
L + +A ++ + I PD + ++LI G+C K D+A+ + M F
Sbjct: 248 ALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPD 307
Query: 268 TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSE 327
V Y V C++ D R++ ++L +M NG NV T+ +++ +L K ++
Sbjct: 308 VVTYTSF---VEAYCKEGDFRRVN----EMLEEMRENGCNPNVVTYTIVMHSLGKSKQVA 360
Query: 328 DAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387
+A+ ++ +M E GC P+ + LI L + R + E+ + M + G Y +
Sbjct: 361 EALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMI 420
Query: 388 TRLCGIERIEQAMSVFEKMK----------TDGHNP------------------------ 413
+ R E A+ + ++M+ + + P
Sbjct: 421 SAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKN 480
Query: 414 ----DSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
D TY LL+ C +V++A F+EAVR G+
Sbjct: 481 DVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGM 517
Score = 32.7 bits (73), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 37/196 (18%)
Query: 275 LDCVSKLCRKKDPFRLDSEAEKVLLDMEYN-GVPRNVETFNVLISNLCKIRRSEDAIKLF 333
LD +SK+ R+ ++A L+ME + GV + N L+ L K E A ++F
Sbjct: 203 LDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVF 262
Query: 334 YRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393
++ + P+ TF +LI +A + + M+D MK +
Sbjct: 263 LKLFD-TIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFT---------------- 305
Query: 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
PD TY + +C + N + +E NG Y
Sbjct: 306 -------------------PDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTY 346
Query: 454 RVDPRYLKKPIAVKKG 469
+ L K V +
Sbjct: 347 TIVMHSLGKSKQVAEA 362
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/429 (21%), Positives = 176/429 (41%), Gaps = 26/429 (6%)
Query: 48 KPTSNPKTIDDPDQVIARSLSGELLENLEADPLPISQRLHLIFSHVTPTPSLVQSTLNFS 107
+ ++NP+ ++ +VI + L N+EA + + L SH L+ L
Sbjct: 123 ESSTNPEEVERVCKVIDELFA--LDRNMEA----VLDEMKLDLSH-----DLIVEVLERF 171
Query: 108 PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFL--VDNKEVLGPKT 165
A + F W + F+H T + + + F+ + L + K +L +T
Sbjct: 172 RHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMET 231
Query: 166 LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT 225
+ A + +G FE M++ Y FK +++ +++ L A+ L
Sbjct: 232 FTIAMKAFAAAKERKKAVGIFELMKK-YKFKIGVETINCLLDSLGRAKLGKEAQVLFDKL 290
Query: 226 ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKK 285
P+ +L+ GWC L EA R+ +M G + VA+N +L+ + + +K
Sbjct: 291 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 350
Query: 286 DPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345
D A K+ M+ G NV ++ ++I + CK E AI+ F M + G P+
Sbjct: 351 D-------AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 403
Query: 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405
+ LI ++ E++ M+ G+ K Y + + + E ++ K
Sbjct: 404 AVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNK 463
Query: 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIA 465
M + P T++++M + + A++DE ++ G+ Y V R L
Sbjct: 464 MIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGL----- 518
Query: 466 VKKGKKRET 474
+ +GK RE
Sbjct: 519 ISEGKSREA 527
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 89/218 (40%), Gaps = 9/218 (4%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE- 228
++ L+R+ + + + F M + G + S +++ C+ A + D +
Sbjct: 340 LEGLLRSMKKSDAIKLFHVM-KSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG 398
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
+ PD + LI G+ KLD L +EM G YN ++ ++
Sbjct: 399 LQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQ------- 451
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
++ ++ M N + ++ TFN+++ + R E ++ M + G P++ ++
Sbjct: 452 KMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSY 511
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
VLI+ L + E ++ M G DY +F
Sbjct: 512 TVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKF 549
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 117/293 (39%), Gaps = 11/293 (3%)
Query: 121 LTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPK--TLASCIDRLVRAGR 178
L + F ET++ D GR K K KE P T ++ R
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRN 313
Query: 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI-FPDDKICD 237
+ + M D+G K D + +++E L + S A KL ++ P+ +
Sbjct: 314 LIEAARIWNDM-IDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYT 372
Query: 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
++I+ +C ++ A +M G + Y C+ ++ +K +LD+ E +
Sbjct: 373 IMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL---ITGFGTQK---KLDTVYE-L 425
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
L +M+ G P + +T+N LI + + E +++ +M + P+ TF +++KS +
Sbjct: 426 LKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFV 485
Query: 358 AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG 410
A G + D M G Y + L + +A E+M G
Sbjct: 486 ARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 538
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 127/287 (44%), Gaps = 9/287 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD-TANE 228
ID L + G L F ME G K D + ++ LC +G K++++
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMK-GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN 310
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
I PD LI + +GKL EAK L EM G T+ YN ++D C++
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID---GFCKEN--- 364
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
EA ++ M G ++ T+++LI++ CK +R +D ++LF + G PN T+
Sbjct: 365 -CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 423
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
L+ Q+ ++ E+ M S G Y L LC + +A+ +FEKM+
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK 483
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
Y++++ C ++VD A +LF GV+ Y V
Sbjct: 484 SRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 134/306 (43%), Gaps = 13/306 (4%)
Query: 133 TLSFFTDYF---GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERM 189
T S D F G+ + K +++ ++ T S ID + + F+ M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 190 ERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGK 248
G + D + +++ C+ +L ++ +++ + P+ + L+ G+C GK
Sbjct: 377 VSK-GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPR 308
L+ AK L +EM G V Y +LD LC + ++A ++ M+ + +
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLD---GLCDNGEL----NKALEIFEKMQKSRMTL 488
Query: 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368
+ +N++I +C + +DA LF + + G P+ T+ V+I L + + E D +
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLF 548
Query: 369 DRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428
+MK G Y + G + ++ + E+MK G + DS T +++ +
Sbjct: 549 RKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML-SD 607
Query: 429 NRVDKA 434
R+DK+
Sbjct: 608 RRLDKS 613
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 86/218 (39%), Gaps = 25/218 (11%)
Query: 239 LIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKD---PFRLDSEAE 295
L+ G+C K E + +MY T+ NC CRKK F + A
Sbjct: 88 LVLGFC---KGMELNGIEHDMYTM-----TIMINC-------YCRKKKLLFAFSVLGRAW 132
Query: 296 KVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSL 355
K+ G + TF+ L++ C R +A+ L RM E P+ T LI L
Sbjct: 133 KL-------GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 185
Query: 356 YQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS 415
RV E +IDRM G+ + Y L RLC A+ +F KM+
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245
Query: 416 ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
Y +++ C D A +LF+E G++ Y
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTY 283
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 126/312 (40%), Gaps = 48/312 (15%)
Query: 182 VLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-PDDKICDLLI 240
VLGF + ME + G + D ++ +++ C +A ++ + PD L+
Sbjct: 89 VLGFCKGMELN-GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLV 147
Query: 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLD 300
G+C++G++ EA L M V + + ++ LC K SEA VL+D
Sbjct: 148 NGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTL---INGLCLKGRV----SEA-LVLID 199
Query: 301 --MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358
+EY P V T+ +++ LCK S A+ LF +M E + + ++I SL +
Sbjct: 200 RMVEYGFQPDEV-TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKD 258
Query: 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG--------------IER--------- 395
+ + + M+ G Y + LC I R
Sbjct: 259 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318
Query: 396 ------------IEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443
+ +A ++ +M T G PD+ TY+ L+ +C N + +AN +FD V
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378
Query: 444 NGVEVKPKEYRV 455
G E Y +
Sbjct: 379 KGCEPDIVTYSI 390
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 158/372 (42%), Gaps = 21/372 (5%)
Query: 92 HVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNA---NFSHTDETLSFFTDYFGRRKD-- 146
H P P+++ + FS A L + +H TLS + F R +
Sbjct: 81 HSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLC 140
Query: 147 --FKAIHDFLVDNKEVLGPKTL--ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSL 202
F A+ + E P T+ ++ I+ L GR ++ L +RM + G K D ++
Sbjct: 141 LAFSAMGKIIKLGYE---PNTITFSTLINGLCLEGRVSEALELVDRM-VEMGHKPDLITI 196
Query: 203 RLVVEKLCENGYASYAEKLV-KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261
+V LC +G + A L+ K P+ ++ C G+ A L R+M
Sbjct: 197 NTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEE 256
Query: 262 GGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321
+L V Y+ I+D + K + F L +E ME G+ N+ T+N+LI C
Sbjct: 257 RNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE-------MEMKGITTNIITYNILIGGFC 309
Query: 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK 381
R +D KL M + +PN TF VLI S + ++ E +E+ M G A
Sbjct: 310 NAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTI 369
Query: 382 DYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441
Y + C +++A + + M + G +P+ T+++L+ +C NR+D LF +
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Query: 442 VRNGVEVKPKEY 453
GV Y
Sbjct: 430 SLRGVVADTVTY 441
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 9/287 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-E 228
ID L + G F ME G + + +++ C G KL++D +
Sbjct: 270 IDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
I P+ +LI + +GKL EA+ L +EM G T+ Y ++D C++
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID---GFCKEN--- 382
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
LD + V L M G N+ TFN+LI+ CK R +D ++LF +M G + T+
Sbjct: 383 HLDKANQMVDL-MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 441
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
LI+ + ++ E+ M S Y L LC E+A+ +FEK++
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
D Y++++ C ++VD A LF GV+ K Y +
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 134/292 (45%), Gaps = 9/292 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T ++ + ++G+ + +ME + K D ++++ LC++G A L +
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE 288
Query: 225 TANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ + I ++LI G+C G+ D+ +L R+M + V ++ ++D K +
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
+ EAE++ +M + G+ + T+ LI CK + A ++ M GC P
Sbjct: 349 LR-------EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
N TF +LI +A R+ +G E+ +M G Y + C + ++ A +F
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
++M + P+ TY +L+ C + +KA +F++ ++ +E+ Y +
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 132/292 (45%), Gaps = 9/292 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + ID V+ G+ + + M G D + +++ C+ + A ++V
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGFCKENHLDKANQMVDL 393
Query: 225 TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
++ P+ + ++LI G+C ++D+ L R+M G TV YN ++ +L +
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
+ A+++ +M VP N+ T+ +L+ LC SE A+++F ++ +
Sbjct: 454 L-------NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
+ + ++I + A++V + ++ + G G K Y + LC + +A +F
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
KM+ DGH PD TY++L+ K+ L +E R G V ++
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKM 618
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%)
Query: 305 GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEG 364
G N TF+ LI+ LC R +A++L RM E G P+ T L+ L + + E
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212
Query: 365 DEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424
+ID+M G Y L +C + AM + KM+ D+ Y +++
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 425 WCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
C H +D A LF+E G+ Y +
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%)
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
ME G+ N+ T +++I+ C+ R+ A ++ + G PN TF LI L R
Sbjct: 114 MELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGR 173
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
V E E++DRM G+ + LC + +AM + +KM G P++ TY
Sbjct: 174 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 233
Query: 421 LMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
++ C + A L + +++ +Y +
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 8/277 (2%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE- 228
I V GR M YG D + ++ + G A +++ D N+
Sbjct: 360 IHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKG 419
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
P+ +L+ G+C GK+DEA + EM G + TV +NC+ +S C++
Sbjct: 420 CKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCL---ISAFCKEH--- 473
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
R+ EA ++ +M G +V TFN LIS LC++ + A+ L M G N T+
Sbjct: 474 RI-PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
LI + + + E ++++ M G + + Y + LC +++A S+FEKM
Sbjct: 533 NTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
DGH P + + ++L+ C V++A E V G
Sbjct: 593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 119/277 (42%), Gaps = 9/277 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE- 228
+D + G+ + M D G K + ++ C+ A ++ ++ +
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
PD + LI G C ++ A L R+M G TV YN +++ + K
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK--- 546
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
EA K++ +M + G P + T+N LI LC+ + A LF +M G P+ +
Sbjct: 547 ----EARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISC 602
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
+LI L ++ V E E M G + + LC RIE +++F K++
Sbjct: 603 NILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQA 662
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
+G PD+ T++ LM+ C V A L DE + +G
Sbjct: 663 EGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDG 699
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 13/249 (5%)
Query: 194 GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEA 252
G++ D ++++ KL NG ++L+ +E I + + +++ + G +
Sbjct: 106 GYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQT 165
Query: 253 KRLAREMYRGGFELGTV--AYNCILDC-VSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN 309
RL EM R + +YN +L+ VS C K A V DM +P
Sbjct: 166 TRLMLEM-RNVYSCEPTFKSYNVVLEILVSGNCHKV--------AANVFYDMLSRKIPPT 216
Query: 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMID 369
+ TF V++ C + + A+ L M + GC PN + LI SL + RV E ++++
Sbjct: 217 LFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 276
Query: 370 RMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429
M G + + + + LC +RI +A + +M G PD TY LM C
Sbjct: 277 EMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIG 336
Query: 430 RVDKANALF 438
RVD A LF
Sbjct: 337 RVDAAKDLF 345
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 11/276 (3%)
Query: 161 LGPKTLA-SC-IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYA 218
L P T+ +C I + R + + F M R G K D + ++ LCE +A
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK-GCKPDVYTFNSLISGLCEVDEIKHA 513
Query: 219 EKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDC 277
L++D +E + + + LI + G++ EA++L EM G L + YN +
Sbjct: 514 LWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSL--- 570
Query: 278 VSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMG 337
+ LCR + + S EK+L D P N+ N+LI+ LC+ E+A++ M
Sbjct: 571 IKGLCRAGEVDKARSLFEKMLRD---GHAPSNISC-NILINGLCRSGMVEEAVEFQKEMV 626
Query: 338 EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIE 397
G P+ TF LI L +A R+ +G M ++++ G + ++ LC +
Sbjct: 627 LRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVY 686
Query: 398 QAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDK 433
A + ++ DG P+ T+ +L+ +D+
Sbjct: 687 DACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 16/287 (5%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI 229
I L + R + L E M G D ++ V+ LC+ + A K+V
Sbjct: 259 IHSLSKCNRVNEALQLLEEMFL-MGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG 317
Query: 230 F-PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
F PDD L+ G C G++D AK L + + V +N ++ R D
Sbjct: 318 FAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLDD-- 371
Query: 289 RLDSEAEKVLLDM--EYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346
A+ VL DM Y VP +V T+N LI K A+++ + M GC PN
Sbjct: 372 -----AKAVLSDMVTSYGIVP-DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVY 425
Query: 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM 406
++ +L+ + ++ E +++ M + G + ++ C RI +A+ +F +M
Sbjct: 426 SYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM 485
Query: 407 KTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
G PD T++ L++ C + + A L + + GV Y
Sbjct: 486 PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 123/327 (37%), Gaps = 50/327 (15%)
Query: 120 WLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE---VLGPKTLASCIDRLVRA 176
W + H+ + G +FK I L+ K+ V S + +A
Sbjct: 100 WTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKA 159
Query: 177 GRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT-ANEIFPDDKI 235
G P Q M Y + S +V+E L A + D + +I P
Sbjct: 160 GFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFT 219
Query: 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAE 295
+++K +C ++D A L R+M + + C
Sbjct: 220 FGVVMKAFCAVNEIDSALSLLRDMTK---------HGC---------------------- 248
Query: 296 KVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSL 355
VP +V + LI +L K R +A++L M GC P+ TF +I L
Sbjct: 249 ----------VPNSV-IYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 356 YQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS 415
+ R+ E +M++RM G+A Y + LC I R++ A +F ++ P+
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEI 353
Query: 416 ETYDLLMTKWCAHNRVDKANALFDEAV 442
++ L+ + H R+D A A+ + V
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMV 380
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 42/214 (19%)
Query: 142 GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS 201
G K+ + + + +V L T S I L RAG + FE+M RD
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD--------- 593
Query: 202 LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261
G+A P + C++LI G C G ++EA +EM
Sbjct: 594 -----------GHA---------------PSNISCNILINGLCRSGMVEEAVEFQKEMVL 627
Query: 262 GGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321
G V +N +++ + + R +D + ++ G+P + TFN L+S LC
Sbjct: 628 RGSTPDIVTFNSLINGLCRAGRIEDGLTM-------FRKLQAEGIPPDTVTFNTLMSWLC 680
Query: 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSL 355
K DA L E G PN T+ +L++S+
Sbjct: 681 KGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 36/195 (18%)
Query: 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346
P + + E NG + + + VLI L + +L +M + G E+
Sbjct: 88 PLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKES 147
Query: 347 TFLVLIKSLYQAARVGEGDEMIDRMKSA---------------------GYAIGKKDYYE 385
F+ +++ +A G+ ++ M++ + + +Y+
Sbjct: 148 LFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYD 207
Query: 386 FLTR---------------LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430
L+R C + I+ A+S+ M G P+S Y L+ NR
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNR 267
Query: 431 VDKANALFDEAVRNG 445
V++A L +E G
Sbjct: 268 VNEALQLLEEMFLMG 282
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 140/348 (40%), Gaps = 48/348 (13%)
Query: 96 TPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLV 155
+ +LV+ L G F W + +F+H+ E+ + G K F + DFL+
Sbjct: 67 SSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLI 126
Query: 156 DNKEV----LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCE 211
+ +E + K RA P++ F RM ++G K D L ++ LC+
Sbjct: 127 EAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMV-EFGIKPCVDDLDQLLHSLCD 185
Query: 212 NGYASYAEKLV-KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVA 270
+ ++A++ K I P K +L++GW A+++ EM +
Sbjct: 186 KKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEM---------LE 236
Query: 271 YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAI 330
NC++D ++ +N L+ LCK +
Sbjct: 237 RNCVVDLLA---------------------------------YNALLDALCKSGDVDGGY 263
Query: 331 KLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL 390
K+F MG G P+ +F + I + A V +++DRMK + + L
Sbjct: 264 KMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTL 323
Query: 391 CGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALF 438
C E+++ A + ++M G NPD+ TY+ +M C H V++A L
Sbjct: 324 CKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLL 371
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%)
Query: 305 GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEG 364
G+ + +T+++L+ +IR + A K+F M E C + + L+ +L ++ V G
Sbjct: 203 GIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGG 262
Query: 365 DEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424
+M M + G + F+ C + A V ++MK P+ T++ ++
Sbjct: 263 YKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKT 322
Query: 425 WCAHNRVDKANALFDEAVRNG 445
C + +VD A L DE ++ G
Sbjct: 323 LCKNEKVDDAYLLLDEMIQKG 343
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 11/196 (5%)
Query: 290 LDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFL 349
L SEA + M G+ V+ + L+ +LC + A + F + +G P+ T+
Sbjct: 153 LPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYS 212
Query: 350 VLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409
+L++ + ++ D M + Y L LC ++ +F++M
Sbjct: 213 ILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNL 272
Query: 410 GHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR-----------NGVEVKPKEYRVDPR 458
G PD+ ++ + + +C V A + D R + ++ K +VD
Sbjct: 273 GLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDA 332
Query: 459 YLKKPIAVKKGKKRET 474
YL ++KG +T
Sbjct: 333 YLLLDEMIQKGANPDT 348
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 2/152 (1%)
Query: 302 EYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARV 361
EYN + + F ++ + +A + F RM E+G P L+ SL V
Sbjct: 130 EYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHV 189
Query: 362 GEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLL 421
E + K G K Y + I A VF++M D Y+ L
Sbjct: 190 NHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNAL 249
Query: 422 MTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
+ C VD +F E G +KP Y
Sbjct: 250 LDALCKSGDVDGGYKMFQEMGNLG--LKPDAY 279
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 154/348 (44%), Gaps = 32/348 (9%)
Query: 135 SFFTDYF--GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERD 192
S ++F GR++D I+ +++ + L + +D + +AG P + FE + +
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI-KA 545
Query: 193 YGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDE 251
F D S +++ L + G+A+ +L + D + +++I G+C GK+++
Sbjct: 546 RRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNK 605
Query: 252 AKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEK--------------- 296
A +L EM GFE V Y ++D ++K+ R + + L EA+
Sbjct: 606 AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID 665
Query: 297 -------------VLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
+L ++ G+ N+ T+N L+ L K +A+ F M E C P
Sbjct: 666 GFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTP 725
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
N+ T+ +LI L + + + M+ G Y ++ L I +A ++F
Sbjct: 726 NQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALF 785
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPK 451
++ K +G PDS Y+ ++ NR A +LF+E R G+ + K
Sbjct: 786 DRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNK 833
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 135/336 (40%), Gaps = 38/336 (11%)
Query: 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA-N 227
CID + G+ FF +E + G K D+ + ++ LC+ A ++ + N
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN 302
Query: 228 EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDP 287
P + +I G+ GK DEA L G +AYNCIL C+ K+ + +
Sbjct: 303 RRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEA 362
Query: 288 FRLDSEAEK----------VLLDM-----------------EYNGVPRNVETFNVLISNL 320
++ E +K +L+DM + G+ NV T N+++ L
Sbjct: 363 LKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380
CK ++ ++A +F M C P+E TF LI L + RV + ++ ++M +
Sbjct: 423 CKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNS 482
Query: 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
Y + R E +++ M +PD + + M +K A+F+
Sbjct: 483 IVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE- 541
Query: 441 AVRNGVEVKPKEYRVDPRYLKKPI--AVKKGKKRET 474
E+K + + D R I +K G ET
Sbjct: 542 ------EIKARRFVPDARSYSILIHGLIKAGFANET 571
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 144/350 (41%), Gaps = 46/350 (13%)
Query: 163 PKTLA-SCIDRLVR-AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEK 220
P +A +CI +R G+ + L FE M++D + + ++++ LC G A +
Sbjct: 341 PSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA--PNLSTYNILIDMLCRAGKLDTAFE 398
Query: 221 LVKDTANE--IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCV 278
L +D+ + +FP+ + ++++ C KLDEA + EM + + ++D +
Sbjct: 399 L-RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGL 457
Query: 279 SKLCRKKDPFR-----LDSE-----------------------AEKVLLDMEYNGVPRNV 310
K+ R D ++ LDS+ K+ DM ++
Sbjct: 458 GKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDL 517
Query: 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370
+ N + + K E +F + P+ ++ +LI L +A E E+
Sbjct: 518 QLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYS 577
Query: 371 MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430
MK G + + Y + C ++ +A + E+MKT G P TY ++ +R
Sbjct: 578 MKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDR 637
Query: 431 VDKANALFDEAVRNGVEVKPKEY-----------RVDPRYLKKPIAVKKG 469
+D+A LF+EA +E+ Y R+D YL ++KG
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/277 (18%), Positives = 108/277 (38%), Gaps = 9/277 (3%)
Query: 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV 222
P+ + + RL R + ++ER +SL LV+ + C N + + + L
Sbjct: 65 PEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMAR-CRN-FDALDQILG 122
Query: 223 KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282
+ + P C ++ G KL E + + M + F AY ++ S +
Sbjct: 123 EMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVN 182
Query: 283 RKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH 342
L + +++ G V F LI K R + A+ L M
Sbjct: 183 HSDMMLTLFQQMQEL-------GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLD 235
Query: 343 PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSV 402
+ + V I S + +V + +++ G + Y + LC R+++A+ +
Sbjct: 236 ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEM 295
Query: 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFD 439
FE ++ + P + Y+ ++ + + + D+A +L +
Sbjct: 296 FEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 66/150 (44%)
Query: 306 VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGD 365
+P E++N L+ + + R + ++ M G P+ T + ++ +A ++ EG
Sbjct: 94 LPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGY 153
Query: 366 EMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425
+++ M+ + Y + + + +++F++M+ G+ P + L+ +
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213
Query: 426 CAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
RVD A +L DE + ++ Y V
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNV 243
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
Query: 270 AYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDA 329
+YN +L +++ CR D +++L +M G +V T ++ K + +
Sbjct: 100 SYNSLLLVMAR-CRNFDAL------DQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREG 152
Query: 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI---DRMKSAGYAIGKKDYYEF 386
+ M ++ P + + LI + + V D M+ +M+ GY +
Sbjct: 153 YDVVQMMRKFKFRPAFSAYTTLIGAF---SAVNHSDMMLTLFQQMQELGYEPTVHLFTTL 209
Query: 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
+ R++ A+S+ ++MK+ + D Y++ + + +VD A F E NG
Sbjct: 210 IRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG- 268
Query: 447 EVKPKE 452
+KP E
Sbjct: 269 -LKPDE 273
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 137/290 (47%), Gaps = 13/290 (4%)
Query: 154 LVDNKEVLG--PKTLA--SCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209
LVD +G P +A + ID L + R FF+ +ER G + + + +V L
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK-GIRPNVVTYTALVNGL 235
Query: 210 CENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT 268
C + S A +L+ D + I P+ L+ + +GK+ EAK L EM R +
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDI 295
Query: 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED 328
V Y+ + ++ LC R+D EA ++ M G +V ++N LI+ CK +R ED
Sbjct: 296 VTYSSL---INGLCLHD---RID-EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVED 348
Query: 329 AIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388
+KLF M + G N T+ LI+ +QA V + E +M G + Y L
Sbjct: 349 GMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLG 408
Query: 389 RLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALF 438
LC +E+A+ +FE M+ + D TY ++ C +V++A +LF
Sbjct: 409 GLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLF 458
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 117/304 (38%), Gaps = 44/304 (14%)
Query: 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-P 231
+V+ + V+ ++ME G + D + +V+ C S A ++ + P
Sbjct: 95 IVKLKKYDVVISLGKKMEV-LGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEP 153
Query: 232 DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLD 291
D L+ G+C ++ +A L +M G++ VAYN I+D + K R D F
Sbjct: 154 DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFF 213
Query: 292 SEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL------------------- 332
E E+ G+ NV T+ L++ LC R DA +L
Sbjct: 214 KEIER-------KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSAL 266
Query: 333 ----------------FYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY 376
F M P+ T+ LI L R+ E ++M D M S G
Sbjct: 267 LDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 326
Query: 377 AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436
Y + C +R+E M +F +M G ++ TY+ L+ + VDKA
Sbjct: 327 LADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQE 386
Query: 437 LFDE 440
F +
Sbjct: 387 FFSQ 390
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 26/226 (11%)
Query: 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG 305
D KL++A L +M + V +N +L + KL + L + ME G
Sbjct: 63 DIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKK-------MEVLG 115
Query: 306 VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGD 365
+ ++ TFN++I+ C + A+ + +M + G P+ T L+ + RV +
Sbjct: 116 IRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV 175
Query: 366 EMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425
++D+M GY Y + LC +R+ A F++++ G P+ TY L+
Sbjct: 176 SLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 235
Query: 426 CAHNRVDKA-------------------NALFDEAVRNGVEVKPKE 452
C +R A +AL D V+NG ++ KE
Sbjct: 236 CNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 127/266 (47%), Gaps = 9/266 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD-TANE 228
ID L ++ + L RME+D G D + ++ LC +G S A ++V T E
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEKD-GIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE 251
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
I+PD + LI +G++ EA+ EM R + V Y+ + + LC
Sbjct: 252 IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL---IYGLCMYS--- 305
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
RLD EAE++ M G +V T+++LI+ CK ++ E +KLF M + G N T+
Sbjct: 306 RLD-EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
+LI+ +A ++ +E+ RM G Y L LC +IE+A+ + M+
Sbjct: 365 TILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKA 434
+G + D TY++++ C V A
Sbjct: 425 NGMDADIVTYNIIIRGMCKAGEVADA 450
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 132/300 (44%), Gaps = 9/300 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T S ++ R R L F++M G+K + +++ LC++ A L+
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMV-GMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNR 211
Query: 225 TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ I PD + LI G C G+ +A R+ M + +N ++D K R
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
SEAE+ +M + ++ T+++LI LC R ++A ++F M GC P
Sbjct: 272 V-------SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFP 324
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
+ T+ +LI ++ +V G ++ M G Y + C ++ A +F
Sbjct: 325 DVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIF 384
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKP 463
+M G +P+ TY++L+ C + +++KA + + +NG++ Y + R + K
Sbjct: 385 RRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKA 444
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
M+ G+P N+ T N+L++ C+ + A+ +M + G P+ TF L+ + R
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDR 166
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
V + M D+M GY Y + LC ++++ A+ + +M+ DG PD TY+
Sbjct: 167 VYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226
Query: 421 LMTKWCAHNRVDKA-------------------NALFDEAVRNGVEVKPKEY 453
L++ C+ R A NAL D V+ G + +E+
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 7/200 (3%)
Query: 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307
K D L +M G N +L+C CR S A L M G
Sbjct: 96 KYDVVIYLWEQMQMLGIPHNLCTCNILLNC---FCRCSQL----SLALSFLGKMIKLGHE 148
Query: 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367
++ TF L++ C+ R DA+ +F +M G PN + +I L ++ +V ++
Sbjct: 149 PSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDL 208
Query: 368 IDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427
++RM+ G Y ++ LC R A + M PD T++ L+
Sbjct: 209 LNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVK 268
Query: 428 HNRVDKANALFDEAVRNGVE 447
RV +A ++E +R ++
Sbjct: 269 EGRVSEAEEFYEEMIRRSLD 288
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 141/303 (46%), Gaps = 10/303 (3%)
Query: 154 LVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENG 213
+VDN V G + +V + Q FF E D S ++++ CE G
Sbjct: 120 MVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFN--ENKSKVVLDVYSFGILIKGCCEAG 177
Query: 214 YASYA-EKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN 272
+ + L++ T P+ I LI G C G++++AK L EM + G Y
Sbjct: 178 EIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYT 237
Query: 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL 332
+++ + K KK F + + M+ +GV N+ T+N +++ LCK R++DA ++
Sbjct: 238 VLINGLFKNGVKKQGFEMYEK-------MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQV 290
Query: 333 FYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392
F M E G N T+ LI L + ++ E ++++D+MKS G Y + CG
Sbjct: 291 FDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCG 350
Query: 393 IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKE 452
+ ++ +A+S+ +K+ G +P TY++L++ +C A + E G++
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410
Query: 453 YRV 455
Y +
Sbjct: 411 YTI 413
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 123/279 (44%), Gaps = 9/279 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYA-EKLVKDTANE 228
ID + G + F M + G ++ + +++ L +NG E K +
Sbjct: 205 IDGCCKKGEIEKAKDLFFEMGK-LGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG 263
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
+FP+ + ++ C DG+ +A ++ EM G V YN + + LCR+
Sbjct: 264 VFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTL---IGGLCRE---M 317
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
+L+ EA KV+ M+ +G+ N+ T+N LI C + + A+ L + G P+ T+
Sbjct: 318 KLN-EANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTY 376
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
+L+ + +M+ M+ G K Y + + +E+A+ + M+
Sbjct: 377 NILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEE 436
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
G PD TY +L+ +C ++++A+ LF V E
Sbjct: 437 LGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCE 475
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 9/284 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T +++L + GR F+ M R+ G + + ++ LC + A K+V
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328
Query: 225 TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
++ I P+ + LI G+C GKL +A L R++ G V YN + VS CR
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNIL---VSGFCR 385
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
K D S A K++ +ME G+ + T+ +LI + E AI+L M E G P
Sbjct: 386 KGDT----SGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP 441
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
+ T+ VLI ++ E + M + Y + C +A+ +
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLL 501
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
++M+ P+ +Y ++ C + +A L ++ + +G++
Sbjct: 502 KEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGID 545
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 139/324 (42%), Gaps = 18/324 (5%)
Query: 160 VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAE 219
V +T I+ L + G Q +E+M+ D G + + V+ +LC++G A
Sbjct: 230 VANERTYTVLINGLFKNGVKKQGFEMYEKMQED-GVFPNLYTYNCVMNQLCKDGRTKDAF 288
Query: 220 KLVKDTANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILD-- 276
++ + + + + LI G C + KL+EA ++ +M G + YN ++D
Sbjct: 289 QVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGF 348
Query: 277 C-VSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYR 335
C V KL +A + D++ G+ ++ T+N+L+S C+ + A K+
Sbjct: 349 CGVGKL----------GKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 336 MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER 395
M E G P++ T+ +LI + ++ + + ++ M+ G Y + C +
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 396 IEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+ +A +F+ M P+ Y+ ++ +C +A L E + YR
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518
Query: 456 DPRYLKKPIAVKKGKKRETLPEKM 479
L K +K K+ E L EKM
Sbjct: 519 MIEVLCKE---RKSKEAERLVEKM 539
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
+ PD +LI G+C+ G+++EA RL + M E V YN + + C++ +
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM---ILGYCKEGSSY 495
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
R A K+L +ME + NV ++ +I LCK R+S++A +L +M + G P+ T+
Sbjct: 496 R----ALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPS-TSI 550
Query: 349 LVLI 352
L LI
Sbjct: 551 LSLI 554
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 7/160 (4%)
Query: 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372
+ V+I++ + + +I F M + G P F L+ + ++ + + K
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156
Query: 373 SAGYAIGKKDYYEF---LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429
S D Y F + C IE++ + ++ G +P+ Y L+ C
Sbjct: 157 SKVVL----DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKG 212
Query: 430 RVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKG 469
++KA LF E + G+ + Y V L K K+G
Sbjct: 213 EIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 129/270 (47%), Gaps = 12/270 (4%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA-NE 228
ID + G + F+RMERD G + D + +V LC +G S A +L++D +
Sbjct: 181 IDGSCKIGLVNDAVELFDRMERD-GVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 239
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
I P+ +I + +GK EA +L EM R + YN + ++ LC
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSL---INGLCMHG--- 293
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
R+D EA+++L M G +V T+N LI+ CK +R ++ KLF M + G + T+
Sbjct: 294 RVD-EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITY 352
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
+I+ +QA R E+ RM S + Y L LC R+E+A+ +FE M+
Sbjct: 353 NTIIQGYFQAGRPDAAQEIFSRMDSRP---NIRTYSILLYGLCMNWRVEKALVLFENMQK 409
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALF 438
D TY++++ C V+ A LF
Sbjct: 410 SEIELDITTYNIVIHGMCKIGNVEDAWDLF 439
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 12/292 (4%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T++S I+ + R + +ME + GF+ D +++ C+ G + A +L
Sbjct: 141 TVSSLINGFCQGNRVFDAIDLVSKME-EMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDR 199
Query: 225 TANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ D + + L+ G C G+ +A RL R+M + + ++D K
Sbjct: 200 MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVK--- 256
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
+ F SEA K+ +M V +V T+N LI+ LC R ++A ++ M GC P
Sbjct: 257 -EGKF---SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
+ T+ LI ++ RV EG ++ M G Y + R + A +F
Sbjct: 313 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 372
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+M + P+ TY +L+ C + RV+KA LF+ ++ +E+ Y +
Sbjct: 373 SRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 421
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 9/270 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI 229
I+ L R R L +M + +G++ D ++ ++ C+ A LV
Sbjct: 111 INCLCRCSRFVIALSVVGKMMK-FGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169
Query: 230 F-PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
F PD I + +I G C G +++A L M R G V YN + V+ LC
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSL---VAGLCCSGRW- 225
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
S+A +++ DM + NV TF +I K + +A+KL+ M P+ T+
Sbjct: 226 ---SDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTY 282
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
LI L RV E +M+D M + G Y + C +R+++ +F +M
Sbjct: 283 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 342
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALF 438
G D+ TY+ ++ + R D A +F
Sbjct: 343 RGLVGDTITYNTIIQGYFQAGRPDAAQEIF 372
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
ME G+ ++ ++N++I+ LC+ R A+ + +M ++G P+ T LI Q R
Sbjct: 95 MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
V + +++ +M+ G+ Y + C I + A+ +F++M+ DG D+ TY+
Sbjct: 155 VFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNS 214
Query: 421 LMTKWCAHNR-VDKANALFDEAVRNGV-EVKPKEYRVDPRYLKKPIAVKKGKKRET--LP 476
L+ C R D A + D +R+ V V +D + VK+GK E L
Sbjct: 215 LVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID-------VFVKEGKFSEAMKLY 267
Query: 477 EKMARK 482
E+M R+
Sbjct: 268 EEMTRR 273
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 47/283 (16%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + ID V+ G+ ++ + +E M R D + ++ LC +G A++++
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTRR-CVDPDVFTYNSLINGLCMHGRVDEAKQMLDL 304
Query: 225 TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ PD + LI G+C ++DE +L REM + G T+ YN I+ + R
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
A+++ M+ N+ T+++L+ LC R E A+ LF M +
Sbjct: 365 P-------DAAQEIFSRMDSRP---NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL 414
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
+ TT+ ++I +C I +E A +F
Sbjct: 415 DITTYNIVIHG-----------------------------------MCKIGNVEDAWDLF 439
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
+ G PD +Y +++ +C + DK++ L+ + +G+
Sbjct: 440 RSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 42/211 (19%)
Query: 270 AYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDA 329
+YN +++C+ + R F + A V+ M G +V T + LI+ C+ R DA
Sbjct: 106 SYNIVINCLCRCSR----FVI---ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDA 158
Query: 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389
I L +M E G P+ + +I + V + E+ DRM+ G Y +
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 218
Query: 390 LCGIER-----------------------------------IEQAMSVFEKMKTDGHNPD 414
LC R +AM ++E+M +PD
Sbjct: 219 LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPD 278
Query: 415 SETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
TY+ L+ C H RVD+A + D V G
Sbjct: 279 VFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 1/170 (0%)
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
K+ L+ E + ++ +P V+ F+ ++S + K + + I LF+ M G
Sbjct: 44 KRSSMNLEEEIDLFCKMIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHHMEVCGIGH 102
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
+ ++ ++I L + +R ++ +M GY + C R+ A+ +
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
KM+ G PD Y+ ++ C V+ A LFD R+GV Y
Sbjct: 163 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTY 212
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 170/393 (43%), Gaps = 57/393 (14%)
Query: 71 LLENL---EADPLPISQRLHLIFS----HVTPT---------PSLVQS--TLNFSPEAGR 112
LL NL E+D + + RL I S H +P+ PS V S +L+ P+
Sbjct: 48 LLRNLPEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSLDLDPKTA- 106
Query: 113 AILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEV-LGPKTLASCID 171
L F+HW++QN + H+ + + ++ L++N V + K I
Sbjct: 107 --LNFSHWISQNPRYKHSVYS-------------YASLLTLLINNGYVGVVFKIRLLMIK 151
Query: 172 RLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA-SYAEKLVKDTANEIF 230
G VL +M +D F+ +L++ C N S A + D +++
Sbjct: 152 SCDSVGDALYVLDLCRKMNKDERFEL---KYKLIIG--CYNTLLNSLARFGLVDEMKQVY 206
Query: 231 PD---DKIC------DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKL 281
+ DK+C + ++ G+C G ++EA + ++ G + Y + +
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSL---IMGY 263
Query: 282 CRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGC 341
C++KD LDS A KV +M G RN + LI LC RR ++A+ LF +M + C
Sbjct: 264 CQRKD---LDS-AFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDEC 319
Query: 342 HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMS 401
P T+ VLIKSL + R E ++ M+ G Y + LC + E+A
Sbjct: 320 FPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARE 379
Query: 402 VFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKA 434
+ +M G P+ TY+ L+ +C ++ A
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGYCKRGMIEDA 412
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 128/285 (44%), Gaps = 10/285 (3%)
Query: 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVK 223
+T I L + R ++ L + ME + G K + + ++++ LC A +L+
Sbjct: 324 RTYTVLIKSLCGSERKSEALNLVKEME-ETGIKPNIHTYTVLIDSLCSQCKFEKARELLG 382
Query: 224 DTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282
+ + P+ + LI G+C G +++A + M T YN + + C
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN---ELIKGYC 439
Query: 283 RKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH 342
+ +A VL M V +V T+N LI C+ + A +L M + G
Sbjct: 440 KSNV-----HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494
Query: 343 PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSV 402
P++ T+ +I SL ++ RV E ++ D ++ G Y + C ++++A +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
EKM + P+S T++ L+ CA ++ +A L ++ V+ G++
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ 599
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 115/278 (41%), Gaps = 18/278 (6%)
Query: 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDL 238
P L F + ++ +K S ++ L NGY +F KI L
Sbjct: 103 PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGV-----------VF---KIRLL 148
Query: 239 LIKGWCVDGKLDEAKRLAREMYRGG-FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
+IK G L R+M + FEL Y I+ C + L F L E ++V
Sbjct: 149 MIKSCDSVGDALYVLDLCRKMNKDERFEL---KYKLIIGCYNTLLNSLARFGLVDEMKQV 205
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
++M + V N+ T+N +++ CK+ E+A + ++ E G P+ T+ LI Q
Sbjct: 206 YMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQ 265
Query: 358 AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET 417
+ ++ + M G + Y + LC RI++AM +F KMK D P T
Sbjct: 266 RKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRT 325
Query: 418 YDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
Y +L+ C R +A L E G++ Y V
Sbjct: 326 YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 123/299 (41%), Gaps = 27/299 (9%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV-K 223
T S ID L ++ R + F+ +E+ G + +++ C+ G A ++ K
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQK-GVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 224 DTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ P+ + LI G C DGKL EA L +M + G + TV+ + IL + +L +
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ-PTVSTDTIL--IHRLLK 614
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
D S +++L +G + T+ I C+ R DA + +M E G P
Sbjct: 615 DGDFDHAYSRFQQML----SSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP 670
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL------------- 390
+ T+ LIK + +++ RM+ G + + + L
Sbjct: 671 DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEP 730
Query: 391 --CGIERI---EQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444
C + + + + + EKM P++++Y+ L+ C + A +FD RN
Sbjct: 731 ELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN 789
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 115/280 (41%), Gaps = 17/280 (6%)
Query: 205 VVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG 263
+++ C +G A +L+ + + PD +I C +++EA L + + G
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527
Query: 264 FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI 323
V Y ++D K ++D EA +L M N TFN LI LC
Sbjct: 528 VNPNVVMYTALIDGYCK------AGKVD-EAHLMLEKMLSKNCLPNSLTFNALIHGLCAD 580
Query: 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383
+ ++A L +M + G P +T +LI L + +M S+G Y
Sbjct: 581 GKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTY 640
Query: 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443
F+ C R+ A + KM+ +G +PD TY L+ + + + N FD R
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIK---GYGDLGQTNFAFDVLKR 697
Query: 444 ---NGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMA 480
G E P ++ +K + +K GK++ + PE A
Sbjct: 698 MRDTGCE--PSQHTF-LSLIKHLLEMKYGKQKGSEPELCA 734
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 124/303 (40%), Gaps = 22/303 (7%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV-KDTANE 228
I RL++ G F++M G K D + ++ C G AE ++ K N
Sbjct: 609 IHRLLKDGDFDHAYSRFQQMLSS-GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFE------------LGTVAYNCILD 276
+ PD LIKG+ G+ + A + + M G E L + Y
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727
Query: 277 CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRM 336
+LC + D+ E +L M + V N +++ LI +C++ A K+F M
Sbjct: 728 SEPELCAMSNMMEFDTVVE-LLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHM 786
Query: 337 G-EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER 395
G P+E F L+ + + E +++D M G+ + + + + L +CG+ +
Sbjct: 787 QRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGH-LPQLESCKVL--ICGLYK 843
Query: 396 I---EQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKE 452
E+ SVF+ + G+ D + +++ V+ LF+ +NG + +
Sbjct: 844 KGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQT 903
Query: 453 YRV 455
Y +
Sbjct: 904 YSL 906
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 294 AEKVLLDMEYN-GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352
AEKV M+ N G+ + FN L+S CK+++ +A K+ M G P + VLI
Sbjct: 779 AEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLI 838
Query: 353 KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHN 412
LY+ G + + GY + + + + +E +F M+ +G
Sbjct: 839 CGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCK 898
Query: 413 PDSETYDLLM 422
S+TY LL+
Sbjct: 899 FSSQTYSLLI 908
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 44/314 (14%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + +D L + R + + + M+ + G ++++ LC+ G + KLV +
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSE-GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDN 282
Query: 225 T-ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
P++ + LI G C+ GKLD+A L M V Y +++ + K R
Sbjct: 283 MFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRR 342
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
D RL L ME G N ++VLIS L K ++E+A+ L+ +M E GC P
Sbjct: 343 ATDAVRL-------LSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKP 395
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAG-------YAIGKKDYYE----------- 385
N + VL+ L + + E E+++RM ++G Y+ K +++
Sbjct: 396 NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVW 455
Query: 386 -----------------FLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428
+ LCG+ R+++AM V+ KM T G PD+ Y ++ C
Sbjct: 456 KEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGI 515
Query: 429 NRVDKANALFDEAV 442
+D A L+ E +
Sbjct: 516 GSMDAALKLYHEML 529
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 131/286 (45%), Gaps = 11/286 (3%)
Query: 164 KTLASCIDRLVRAGRPTQVLGFFERM---ERDYGFKRDKDSLRLVVEKLCENGYASYAEK 220
K+ S ++ ++ G + L F++ + + + S LV++ LC+ + A +
Sbjct: 149 KSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIE 208
Query: 221 LVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279
+ + + PD L+ G C + ++DEA L EM G V YN ++D
Sbjct: 209 VFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLID--- 265
Query: 280 KLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339
LC+K D R+ K++ +M G N T+N LI LC + + A+ L RM
Sbjct: 266 GLCKKGDLTRV----TKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSS 321
Query: 340 GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399
C PN+ T+ LI L + R + ++ M+ GY + + Y ++ L + E+A
Sbjct: 322 KCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEA 381
Query: 400 MSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
MS++ KM G P+ Y +L+ C + ++A + + + +G
Sbjct: 382 MSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 143/333 (42%), Gaps = 17/333 (5%)
Query: 123 QNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLG----PKTLASCIDRLVRAGR 178
Q+ S + + D ++ D + LVDN + G T + I L G+
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGDLTRVTK-LVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFP-DDKICD 237
+ + ERM D + ++ L + A+ A +L+ + + I
Sbjct: 308 LDKAVSLLERMVSSKCIPNDV-TYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYS 366
Query: 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
+LI G +GK +EA L R+M G + V Y+ ++D LCR+ P +EA+++
Sbjct: 367 VLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVD---GLCREGKP----NEAKEI 419
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
L M +G N T++ L+ K E+A++++ M + GC N+ + VLI L
Sbjct: 420 LNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCG 479
Query: 358 AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD---GHNPD 414
RV E + +M + G Y + LCGI ++ A+ ++ +M PD
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPD 539
Query: 415 SETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
TY++L+ C + +A L + + G +
Sbjct: 540 VVTYNILLDGLCMQKDISRAVDLLNSMLDRGCD 572
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 139/369 (37%), Gaps = 59/369 (15%)
Query: 125 ANFSHTDETLSFFTDYFGRRKDFKAIHDFL----VDNKEVLGPKTLASCIDRLVRAGRPT 180
+F D TLS + + DF ++ L ++N+ ++ ++ +A P
Sbjct: 71 GSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVII-ERSFIVVFRAYGKAHLPD 129
Query: 181 QVLGFFERMERDYGFKRDKDSLRLVVEKLCENGY----ASYAEKLVKDTAN-EIFPDDKI 235
+ + F RM ++ KR S V+ + G + + +V N I P+
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLS 189
Query: 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAE 295
+L+IK C KL R A E++RG E RK P
Sbjct: 190 FNLVIKALC---KLRFVDR-AIEVFRGMPE-----------------RKCLP-------- 220
Query: 296 KVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSL 355
+ T+ L+ LCK R ++A+ L M GC P+ + VLI L
Sbjct: 221 -------------DGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGL 267
Query: 356 YQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS 415
+ + +++D M G + Y + LC ++++A+S+ E+M + P+
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 416 ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRE-- 473
TY L+ R A L G + Y V L K+GK E
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGL-----FKEGKAEEAM 382
Query: 474 TLPEKMARK 482
+L KMA K
Sbjct: 383 SLWRKMAEK 391
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 23/276 (8%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI 229
+D L R G+P + RM G + + +++ + G A ++ K+
Sbjct: 404 VDGLCREGKPNEAKEILNRMIAS-GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTG 462
Query: 230 FPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
+K C +LI G C G++ EA + +M G + TVAY+ I+ + +
Sbjct: 463 CSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAAL 522
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
+L E +L E P +V T+N+L+ LC + A+ L M + GC P+ T
Sbjct: 523 KLYHE---MLCQEEPKSQP-DVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITC 578
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
+ +L + KS G+ E + RL +R+ A ++ E M
Sbjct: 579 NTFLNTLSE--------------KSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLG 624
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444
P + T+ +++ + C + K NA D+ RN
Sbjct: 625 KYLAPKTSTWAMIVREIC---KPKKINAAIDKCWRN 657
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/470 (21%), Positives = 191/470 (40%), Gaps = 64/470 (13%)
Query: 23 SPQSTYFSRFSPTHYLNFLSKPFSSKPTSNPKTIDDPDQV-----IARSLSGELLEN--- 74
S +T + RF+ T + F K + + +QV +A+++S L+ +
Sbjct: 26 SSSATVWVRFNMTIRIINRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQL 85
Query: 75 -----LEADPLPISQRLHLIFSHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSH 129
L+ L +SQ +V+ LN AG F W + ++ H
Sbjct: 86 VLDSALDQSGLRVSQ-------------EVVEDVLNRFRNAGLLTYRFFQWSEKQRHYEH 132
Query: 130 TDETLSFFTDYFGRRKDFKAIHDFL--VDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFE 187
+ + + + +K + D + + K++L +T + + RA + + + F
Sbjct: 133 SVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIYAFN 192
Query: 188 RMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG 247
ME+ Y + + ++ LC++ A+++ ++ + PD K +L++GW +
Sbjct: 193 VMEK-YDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEP 251
Query: 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSK---------LCRKKDPF---------- 288
L +A+ + REM G V Y+ ++D + K + R DP
Sbjct: 252 NLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYS 311
Query: 289 ----------RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGE 338
RL+ EA L+ME +G+ +V FN LI CK R ++ ++ M
Sbjct: 312 VLVHTYGTENRLE-EAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKS 370
Query: 339 WGCHPNETTFLVLIKSLYQAARVGEGDEMIDRM-KSAGYAIGKKDYYEFLTRL-CGIERI 396
G PN + ++++ L + GE DE D K D Y + ++ C + +
Sbjct: 371 KGVTPNSKSCNIILRHLIER---GEKDEAFDVFRKMIKVCEPDADTYTMVIKMFCEKKEM 427
Query: 397 EQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
E A V++ M+ G P T+ +L+ C KA L +E + G+
Sbjct: 428 ETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGI 477
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 112/241 (46%), Gaps = 19/241 (7%)
Query: 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
++++ + K+DEA M + VA+N +L S LC+ K+ +A++V
Sbjct: 173 IVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLL---SALCKSKNV----RKAQEV 225
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
+M P + +T+++L+ K A ++F M + GCHP+ T+ +++ L +
Sbjct: 226 FENMRDRFTP-DSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCK 284
Query: 358 AARVGEGDEMIDRMKSAGYAIGKKD--YYEFLTRLCGIE-RIEQAMSVFEKMKTDGHNPD 414
A RV DE + ++S +I K Y L G E R+E+A+ F +M+ G D
Sbjct: 285 AGRV---DEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKAD 341
Query: 415 SETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRET 474
++ L+ +C NR+ + E GV K + R+L +++G+K E
Sbjct: 342 VAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHL-----IERGEKDEA 396
Query: 475 L 475
Sbjct: 397 F 397
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 177 GRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKI 235
R + + F MER G K D ++ C+ +++K+ ++ + P+ K
Sbjct: 321 NRLEEAVDTFLEMERS-GMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKS 379
Query: 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAE 295
C+++++ G+ DEA + R+M + E Y + + C KK+ A+
Sbjct: 380 CNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMV---IKMFCEKKEM----ETAD 431
Query: 296 KVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
KV M GV ++ TF+VLI+ LC+ R ++ A L M E G P+ TF
Sbjct: 432 KVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 146/338 (43%), Gaps = 14/338 (4%)
Query: 123 QNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPK----TLASCIDRLVRAGR 178
QN H T S + F RR L + LG + TL+S ++ + R
Sbjct: 108 QNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMK-LGYEPNIVTLSSLLNGYCHSKR 166
Query: 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV-KDTANEIFPDDKICD 237
++ + ++M G++ + + ++ L + AS A L+ + A PD
Sbjct: 167 ISEAVALVDQMFVT-GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
+++ G C G D A L +M +G E G + YN I+D + K D L E
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE---- 281
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
ME G+ NV T++ LIS LC R DA +L M E +P+ TF LI + +
Sbjct: 282 ---METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 358 AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET 417
++ E +++ D M Y + C +R+++A +FE M + PD T
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 398
Query: 418 YDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
Y+ L+ +C + RV++ +F E + G+ Y +
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 128/281 (45%), Gaps = 9/281 (3%)
Query: 168 SCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN 227
+ ID L + L F+ ME G + + + ++ LC G S A +L+ D
Sbjct: 261 TIIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 228 -EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKD 286
+I PD LI + +GKL EA++L EM + + V Y+ + ++ C
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL---INGFCMHD- 375
Query: 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346
RLD EA+++ M +V T+N LI CK +R E+ +++F M + G N
Sbjct: 376 --RLD-EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Query: 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM 406
T+ +LI+ L+QA E+ M S G Y L LC ++E+AM VFE +
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Query: 407 KTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
+ P TY++++ C +V+ LF GV+
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK 533
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 34/349 (9%)
Query: 154 LVDNKEVLGPK----TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209
LVD V G + T + I L + ++ + +RM G + D + +VV L
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDLVTYGVVVNGL 231
Query: 210 CENGYASYAEKLV-KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT 268
C+ G A L+ K ++ P I + +I G C +D+A L +EM G
Sbjct: 232 CKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 291
Query: 269 VAYNCILDCVSKLCRKKDPFRLDS----------------------------EAEKVLLD 300
V Y+ ++ C+ R D RL S EAEK+ +
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
M + ++ T++ LI+ C R ++A ++F M C P+ T+ LIK + R
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
V EG E+ M G Y + L + A +F++M +DG P+ TY+
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 421 LMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKG 469
L+ C + +++KA +F+ R+ +E Y + + K V+ G
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 146/336 (43%), Gaps = 38/336 (11%)
Query: 113 AILGFNHWLTQNANFSHTDETLSFFTDY---------------------FGRRKDFKAIH 151
+L +N + + H D+ L+ F + +GR D +
Sbjct: 255 GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLL 314
Query: 152 DFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD----SLRLVVE 207
+++ K T ++ ID V+ G+ + ++ M KR D + ++
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM-----VKRSIDPSIVTYSSLIN 369
Query: 208 KLCENGYASYAEKLVK-DTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
C + A+++ + + FPD + LIKG+C +++E + REM + G
Sbjct: 370 GFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 429
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326
TV YN + + L + D A+++ +M +GVP N+ T+N L+ LCK +
Sbjct: 430 NTVTYNIL---IQGLFQAGDC----DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
E A+ +F + P T+ ++I+ + +A +V +G ++ + G Y
Sbjct: 483 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTM 542
Query: 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLM 422
++ C E+A ++F++MK DG P+S Y+ L+
Sbjct: 543 ISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 109/241 (45%), Gaps = 19/241 (7%)
Query: 143 RRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSL 202
R + K + +F+V T + I + R + + F M + G + +
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR-GLVGNTVTY 434
Query: 203 RLVVEKLCENGYASYAEKLVKDTANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYR 261
++++ L + G A+++ K+ ++ P + + + L+ G C +GKL++A + + R
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494
Query: 262 GGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321
E YN +++ + K + +D + L ++ GV +V +N +IS C
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDL-------FCNLSLKGVKPDVVAYNTMISGFC 547
Query: 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGD-----EMIDRMKSAGY 376
+ E+A LF M E G PN + LI+ AR+ +GD E+I M+S G+
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIR-----ARLRDGDREASAELIKEMRSCGF 602
Query: 377 A 377
A
Sbjct: 603 A 603
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 7/200 (3%)
Query: 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307
KLD+A L EM + + ++ +L ++K+ + L + + + G+P
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL-------GIP 113
Query: 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367
N T+++LI+ C+ + A+ + +M + G PN T L+ + R+ E +
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173
Query: 368 IDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427
+D+M GY + + L + +AM++ ++M G PD TY +++ C
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK 233
Query: 428 HNRVDKANALFDEAVRNGVE 447
D A L ++ + +E
Sbjct: 234 RGDTDLAFNLLNKMEQGKLE 253
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 9/292 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T ++ ID L R G + F+ ME G K + +V LC+ G + L+KD
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 225 TAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ EI P+ ++L+ + +GKL EA L +EM G + YN ++D C
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMD---GYCM 345
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
+ RL SEA +L M N ++ TF LI C ++R +D +K+F + + G
Sbjct: 346 QN---RL-SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVA 401
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
N T+ +L++ Q+ ++ +E+ M S G Y L LC ++E+A+ +F
Sbjct: 402 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
E ++ + Y ++ C +V+ A LF GV+ Y V
Sbjct: 462 EDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 9/273 (3%)
Query: 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-P 231
+ R + VL F +++E + G + +L +++ C +A ++ + P
Sbjct: 98 IARTKQFNLVLDFCKQLELN-GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEP 156
Query: 232 DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLD 291
D + LIKG ++GK+ EA L M G + V YN I V+ +CR D
Sbjct: 157 DTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSI---VNGICRSGDT---- 209
Query: 292 SEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVL 351
S A +L ME V +V T++ +I +LC+ + AI LF M G + T+ L
Sbjct: 210 SLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSL 269
Query: 352 IKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGH 411
++ L +A + +G ++ M S + L ++++A ++++M T G
Sbjct: 270 VRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI 329
Query: 412 NPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444
+P+ TY+ LM +C NR+ +AN + D VRN
Sbjct: 330 SPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 137/313 (43%), Gaps = 9/313 (2%)
Query: 142 GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS 201
G+ + + D +V+N T S ++ + R+G + L +ME + K D +
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME-ERNVKADVFT 230
Query: 202 LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMY 260
+++ LC +G A L K+ + + + L++G C GK ++ L ++M
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290
Query: 261 RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320
+ +N +LD K + + EA ++ +M G+ N+ T+N L+
Sbjct: 291 SREIVPNVITFNVLLDVFVKEGKLQ-------EANELYKEMITRGISPNIITYNTLMDGY 343
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380
C R +A + M C P+ TF LIK RV +G ++ + G
Sbjct: 344 CMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403
Query: 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
Y + C +I+ A +F++M + G PD TY +L+ C + +++KA +F++
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463
Query: 441 AVRNGVEVKPKEY 453
++ +++ Y
Sbjct: 464 LQKSKMDLGIVMY 476
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 9/236 (3%)
Query: 143 RRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSL 202
R + + D +V NK T S I R + F + + G + +
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISK-RGLVANAVTY 406
Query: 203 RLVVEKLCENGYASYAEKLVKD-TANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261
++V+ C++G AE+L ++ ++ + PD +L+ G C +GKL++A + ++ +
Sbjct: 407 SILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK 466
Query: 262 GGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321
+LG V Y I++ + K + +D + L + GV NV T+ V+IS LC
Sbjct: 467 SKMDLGIVMYTTIIEGMCKGGKVEDAWNL-------FCSLPCKGVKPNVMTYTVMISGLC 519
Query: 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA 377
K +A L +M E G PN+ T+ LI++ + + ++I+ MKS G++
Sbjct: 520 KKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFS 575
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 7/183 (3%)
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
+E NG+ N+ T N++I+ C+ ++ A + ++ + G P+ TTF LIK L+ +
Sbjct: 114 LELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGK 173
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
V E ++DRM G Y + +C A+ + KM+ D TY
Sbjct: 174 VSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYST 233
Query: 421 LMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKK-------PIAVKKGKKRE 473
++ C +D A +LF E G++ Y R L K + +K RE
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 474 TLP 476
+P
Sbjct: 294 IVP 296
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 12/218 (5%)
Query: 256 AREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV 315
+++ G N +++C + C+ + + + K+ G + TFN
Sbjct: 111 CKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKL-------GYEPDTTTFNT 163
Query: 316 LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375
LI L + +A+ L RM E GC P+ T+ ++ + ++ +++ +M+
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN 223
Query: 376 YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN 435
Y + LC I+ A+S+F++M+T G TY+ L+ C + +
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283
Query: 436 ALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRE 473
L + V E+ P + + VK+GK +E
Sbjct: 284 LLLKDMVSR--EIVPNVITFNVLL---DVFVKEGKLQE 316
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 162/406 (39%), Gaps = 54/406 (13%)
Query: 120 WLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKT---LASCIDRLVRA 176
+ +Q NF H+ + GR + F I D L ++ P T I A
Sbjct: 73 YASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEA 132
Query: 177 GRPTQVLGFFERM-----------------------------------ERDYGFKRDKDS 201
P +VL F +M R +G + S
Sbjct: 133 KLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRS 192
Query: 202 LRLVVEKLCENGYASYAEKLV-KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMY 260
L+++ C N S A +L K ++ PD +LI+G+C G+++ A L +M
Sbjct: 193 YNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDML 252
Query: 261 RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320
GF ++Y +L+ LCRK EA K+L M+ G ++ +N +I
Sbjct: 253 NKGFVPDRLSYTTLLN---SLCRKTQL----REAYKLLCRMKLKGCNPDLVHYNTMILGF 305
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380
C+ R+ DA K+ M GC PN ++ LI L EG + ++ M S G++
Sbjct: 306 CREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHF 365
Query: 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
+ C ++E+A V E + +G S+T+++++ C + +K ++
Sbjct: 366 SVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLED 425
Query: 441 AVRNGVEVKPKEYRVDPRYLKKPIAVKKG-KKRETLPEKMARKRRR 485
AV+ +E D R + I + + + K AR+RRR
Sbjct: 426 AVK-------EEITGDTRIVDVGIGLGSYLSSKLQMKRKNARERRR 464
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 14/282 (4%)
Query: 141 FGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD 200
F + F + DF D + K + + LV + F++ M R+ G
Sbjct: 103 FDSLRVFHKMKDFDCDPSQ----KAYVTVLAILVEENQLNLAFKFYKNM-REIGLPPTVA 157
Query: 201 SLRLVVEKLCEN-GYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLARE 258
SL ++++ LC N G K+ + PD LI G C G++DEAK+L E
Sbjct: 158 SLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTE 217
Query: 259 MYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLIS 318
M V Y + ++ LC K+ EA + L +M+ G+ NV T++ L+
Sbjct: 218 MVEKDCAPTVVTYTSL---INGLCGSKNV----DEAMRYLEEMKSKGIEPNVFTYSSLMD 270
Query: 319 NLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI 378
LCK RS A++LF M GC PN T+ LI L + ++ E E++DRM G
Sbjct: 271 GLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKP 330
Query: 379 GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
Y + ++ C I + +A + ++M G P+ T+++
Sbjct: 331 DAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNI 372
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 154/358 (43%), Gaps = 16/358 (4%)
Query: 96 TPSLVQSTLNFSPEAGRAILGFNHWLTQNAN-FSHTDETLSFFTDYFGRRKDFKAIHDFL 154
TPS V + + +++ F+ + AN + H + + FKA D +
Sbjct: 15 TPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLI 74
Query: 155 VDNKE---VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCE 211
V K V+ L S R RP L F +M +D+ + + V+ L E
Sbjct: 75 VRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKM-KDFDCDPSQKAYVTVLAILVE 133
Query: 212 NGYASYAEKLVKDTANEIF--PDDKICDLLIKGWC-VDGKLDEAKRLAREMYRGGFELGT 268
+ A K K+ EI P ++LIK C DG +D ++ EM + G + +
Sbjct: 134 ENQLNLAFKFYKNM-REIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDS 192
Query: 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED 328
Y + +S LCR F EA+K+ +M V T+ LI+ LC + ++
Sbjct: 193 YTYGTL---ISGLCR----FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDE 245
Query: 329 AIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388
A++ M G PN T+ L+ L + R + E+ + M + G Y +T
Sbjct: 246 AMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLIT 305
Query: 389 RLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
LC ++I++A+ + ++M G PD+ Y +++ +CA ++ +A DE + G+
Sbjct: 306 GLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGI 363
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 87/196 (44%), Gaps = 8/196 (4%)
Query: 255 LAREMYRGGFELG---TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE 311
LA + Y+ E+G TVA +L + LCR K+ L+M G +
Sbjct: 139 LAFKFYKNMREIGLPPTVASLNVL--IKALCRNDGTV---DAGLKIFLEMPKRGCDPDSY 193
Query: 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRM 371
T+ LIS LC+ R ++A KLF M E C P T+ LI L + V E ++ M
Sbjct: 194 TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM 253
Query: 372 KSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRV 431
KS G Y + LC R QAM +FE M G P+ TY L+T C ++
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 432 DKANALFDEAVRNGVE 447
+A L D G++
Sbjct: 314 QEAVELLDRMNLQGLK 329
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 3/207 (1%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLC-ENGYASYAEKLVK 223
T +S +D L + GR Q + FE M G + + + ++ LC E E L +
Sbjct: 264 TYSSLMDGLCKDGRSLQAMELFEMM-MARGCRPNMVTYTTLITGLCKEQKIQEAVELLDR 322
Query: 224 DTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ PD + +I G+C K EA EM GG + +N + +++ R
Sbjct: 323 MNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVR 382
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
S A + L M G+ VET L+ LCK + A++L + GC P
Sbjct: 383 GLCA-NYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIP 441
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDR 370
++ T+ +LI VGE + + R
Sbjct: 442 SKGTWKLLIGHTLDKTIVGEASDTLLR 468
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 127/317 (40%), Gaps = 56/317 (17%)
Query: 153 FLVDNKEVLGPKTLASCIDRLVRA-----GRPTQVLGFFERMERDYGFKRDKDSLRLVVE 207
F + +E+ P T+AS ++ L++A G L F M + G D + ++
Sbjct: 143 FYKNMREIGLPPTVAS-LNVLIKALCRNDGTVDAGLKIFLEMPKR-GCDPDSYTYGTLIS 200
Query: 208 KLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
LC G A+KL + + P LI G C +DEA R EM G E
Sbjct: 201 GLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEP 260
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326
Y+ ++D LC KD L +A ++ M G N+ T+ LI+ LCK ++
Sbjct: 261 NVFTYSSLMD---GLC--KDGRSL--QAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEG----DEMI------DR------ 370
++A++L RM G P+ + +I ++ E DEMI +R
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 371 -------------------------MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405
M+S G ++ + + LC ++A+ + ++
Sbjct: 374 VKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDE 433
Query: 406 MKTDGHNPDSETYDLLM 422
+ TDG P T+ LL+
Sbjct: 434 IVTDGCIPSKGTWKLLI 450
>sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200
OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1
Length = 523
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 106/471 (22%), Positives = 196/471 (41%), Gaps = 47/471 (9%)
Query: 17 PPHRFISPQSTYFSRFS--PTHYLNFLSKPFSSKPTSNPKTIDDPDQVIARSLSGELLEN 74
PP + SRF TH+L+ L P N DD D+ A + + +
Sbjct: 33 PPETPNHKNNITLSRFHFLGTHFLHSLGAPDKFPNRFN----DDKDKQSALDVHNIIKHH 88
Query: 75 LEADPLPISQRLHLIFSHVTPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETL 134
+ P I + L + T LV +N + + + + + + +
Sbjct: 89 RGSSPEKIKRILDK--CGIDLTEELVLEVVNRNRSDWKPAYILSQLVVKQSVHLSSSMLY 146
Query: 135 SFFTDYFGRRKDFKAIH---DFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMER 191
+ D G+ + F+ H D + + KT ++R A + + +G FER +
Sbjct: 147 NEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFER-RK 205
Query: 192 DYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDE 251
++G D + ++ LC + +AE L E D K ++++ GWCV G + E
Sbjct: 206 EFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNMILNGWCVLGNVHE 265
Query: 252 AKRLAREMYRGGFELGTVAYNCILDCVS---KLCRKKDPFR-----------------LD 291
AKR +++ V+Y +++ ++ KL + + +R +D
Sbjct: 266 AKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVID 325
Query: 292 S--------EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG--C 341
+ EA +V ++ G NV T+N L+ +LCKIRR+E +L M G C
Sbjct: 326 ALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSC 385
Query: 342 HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL-CGIERIEQAM 400
PN+ TF L+K + R + D +++RM + D Y + RL ++ E+
Sbjct: 386 SPNDVTFSYLLK---YSQRSKDVDIVLERMAKNKCEM-TSDLYNLMFRLYVQWDKEEKVR 441
Query: 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPK 451
++ +M+ G PD TY + + ++ +A + F E + G+ +P+
Sbjct: 442 EIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPR 492
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 147/342 (42%), Gaps = 14/342 (4%)
Query: 141 FGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD 200
G+ + I + L + V T I +AG L +RM D
Sbjct: 150 LGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS----VSPDVV 205
Query: 201 SLRLVVEKLCENGYASYA-EKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREM 259
+ ++ LC++G A E L + + +PD +LI+ C D + A +L EM
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM 265
Query: 260 YRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN 319
G V YN + V+ +C++ RLD EA K L DM +G NV T N+++ +
Sbjct: 266 RDRGCTPDVVTYNVL---VNGICKEG---RLD-EAIKFLNDMPSSGCQPNVITHNIILRS 318
Query: 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG 379
+C R DA KL M G P+ TF +LI L + +G +++++M G
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFD 439
Y L C +++++A+ E+M + G PD TY+ ++T C +V+ A + +
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438
Query: 440 EAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMAR 481
+ G Y L K A K GK + L E A+
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAK--AGKTGKAIKLLDEMRAK 478
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 124/257 (48%), Gaps = 8/257 (3%)
Query: 191 RDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT-ANEIFPDDKICDLLIKGWCVDGKL 249
RD G D + ++V +C+ G A K + D ++ P+ +++++ C G+
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325
Query: 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN 309
+A++L +M R GF V +N + ++ LCRK L A +L M +G N
Sbjct: 326 MDAEKLLADMLRKGFSPSVVTFNIL---INFLCRKG----LLGRAIDILEKMPQHGCQPN 378
Query: 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMID 369
++N L+ CK ++ + AI+ RM GC+P+ T+ ++ +L + +V + E+++
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438
Query: 370 RMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429
++ S G + Y + L + +A+ + ++M+ PD+ TY L+
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498
Query: 430 RVDKANALFDEAVRNGV 446
+VD+A F E R G+
Sbjct: 499 KVDEAIKFFHEFERMGI 515
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 143/333 (42%), Gaps = 13/333 (3%)
Query: 116 GFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFL---VDNKEVLGPKTLASCIDR 172
G H+ + N++F+ D + R + + FL V + V + I
Sbjct: 87 GNGHYSSVNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRG 146
Query: 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPD 232
R G+ + E +E G D + +++ C+ G + A ++ + + PD
Sbjct: 147 FCRLGKTRKAAKILEILEGS-GAVPDVITYNVMISGYCKAGEINNALSVLDRMS--VSPD 203
Query: 233 DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDS 292
+ +++ C GKL +A + M + + Y +++ CR
Sbjct: 204 VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEAT---CRDSGV----G 256
Query: 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352
A K+L +M G +V T+NVL++ +CK R ++AIK M GC PN T +++
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIIL 316
Query: 353 KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHN 412
+S+ R + ++++ M G++ + + LC + +A+ + EKM G
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 413 PDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
P+S +Y+ L+ +C ++D+A + V G
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 130/269 (48%), Gaps = 15/269 (5%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI 229
++ + + GR + + F M G + + + +++ +C G AEKL+ D +
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Query: 230 F-PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
F P ++LI C G L A + +M + G + +++YN +L C++K
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH---GFCKEKKMD 396
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
R A + L M G ++ T+N +++ LCK + EDA+++ ++ GC P T+
Sbjct: 397 R----AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER---IEQAMSVFEK 405
+I L +A + G+ +++D M++ K D + + + G+ R +++A+ F +
Sbjct: 453 NTVIDGLAKAGKTGKAIKLLDEMRAKDL---KPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKA 434
+ G P++ T++ +M C + D+A
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRA 538
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 30/235 (12%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYA-EKLVKDTANE 228
I+ L R G + + E+M + +G + + S ++ C+ A E L + +
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQ-HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
+PD + ++ C DGK+++A + ++ G + YN ++D ++K +
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469
Query: 289 RL-----------DS-----------------EAEKVLLDMEYNGVPRNVETFNVLISNL 320
+L D+ EA K + E G+ N TFN ++ L
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375
CK R+++ AI M GC PNET++ +LI+ L E E+++ + + G
Sbjct: 530 CKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Query: 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352
E K L +M Y+G ++ LI C++ ++ A K+ + G P+ T+ V+I
Sbjct: 120 EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMI 179
Query: 353 KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHN 412
+A + ++DRM + + Y L LC +++QAM V ++M
Sbjct: 180 SGYCKAGEINNALSVLDRMSVSPDVV---TYNTILRSLCDSGKLKQAMEVLDRMLQRDCY 236
Query: 413 PDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
PD TY +L+ C + V A L DE G Y V
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 8/263 (3%)
Query: 194 GFKRDKDSLRLVVEKLCENGYASYA-EKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEA 252
GF + +++ LC G A + L K + P+ + L+ G+C + K+D A
Sbjct: 339 GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRA 398
Query: 253 KRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVET 312
M G V YN +L + K + +D A ++L + G + T
Sbjct: 399 IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVED-------AVEILNQLSSKGCSPVLIT 451
Query: 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372
+N +I L K ++ AIKL M P+ T+ L+ L + +V E + +
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 373 SAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVD 432
G + + LC + ++A+ M G P+ +Y +L+
Sbjct: 512 RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAK 571
Query: 433 KANALFDEAVRNGVEVKPKEYRV 455
+A L +E G+ K +V
Sbjct: 572 EALELLNELCNKGLMKKSSAEQV 594
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 160/385 (41%), Gaps = 46/385 (11%)
Query: 99 LVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK 158
+V LN +G A++ F W + + + S GRRK F + D L
Sbjct: 119 IVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMV 178
Query: 159 -EVLGP--KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215
E + P + L +D VR + + FE E +G K +S ++ LCE +
Sbjct: 179 CEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESE-SFGVKCSTESFNALLRCLCERSHV 237
Query: 216 SYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCIL 275
S A+ + I D +++I GW G+++E +++ +EM GF ++Y+ ++
Sbjct: 238 SAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLI 297
Query: 276 DCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYR 335
+ + + R D ++ ++++ G + +N +I N R +++++ + R
Sbjct: 298 EGLGRTGRINDSV-------EIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRR 350
Query: 336 MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS---------------------- 373
M + C PN T+ L+ L + +V + E+ + M S
Sbjct: 351 MLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGP 410
Query: 374 -------------AGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
AG I + Y L RL + ++V+++M+ G+ D E Y+
Sbjct: 411 PHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEY 470
Query: 421 LMTKWCAHNRVDKANALFDEAVRNG 445
++ C ++ A + +EA+R G
Sbjct: 471 IVDGLCIIGHLENAVLVMEEAMRKG 495
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 114/266 (42%), Gaps = 9/266 (3%)
Query: 182 VLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLI 240
++ FF+ R+ G +D S +++ L S+ ++K E + PD + + +
Sbjct: 134 MVTFFDWAVREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAM 193
Query: 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLD 300
+ + A L E G + T ++N +L C LC R A K + +
Sbjct: 194 DSFVRVHYVRRAIELFEESESFGVKCSTESFNALLRC---LCE-----RSHVSAAKSVFN 245
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
+ +P + ++N++IS K+ E+ K+ M E G P+ ++ LI+ L + R
Sbjct: 246 AKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGR 305
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
+ + E+ D +K G Y + +++M + +M + P+ ETY
Sbjct: 306 INDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSK 365
Query: 421 LMTKWCAHNRVDKANALFDEAVRNGV 446
L++ +V A +F+E + GV
Sbjct: 366 LVSGLIKGRKVSDALEIFEEMLSRGV 391
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 9/282 (3%)
Query: 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA 226
++ ID L + L F M+ + G + D + ++ LC G S A +L+ D
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMD-NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302
Query: 227 N-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKK 285
+I P+ + LI + +GKL EA++L EM + + V YN + ++ C
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL---INGFCMHD 359
Query: 286 DPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345
RLD EA+++ M +V T+N LI+ CK ++ D ++LF M G N
Sbjct: 360 ---RLD-EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNT 415
Query: 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405
T+ LI +QA+ + +M S G Y L LC ++E+AM VFE
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475
Query: 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
++ PD TY+++ C +V+ LF GV+
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK 517
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 151/353 (42%), Gaps = 14/353 (3%)
Query: 123 QNANFSHTDETLSFFTDYFGRRKDFKAIHDF-LVDNKEVLGPK----TLASCIDRLVRAG 177
Q + +T++F T G + KA LV+ V G + T + I+ L + G
Sbjct: 160 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 219
Query: 178 RPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKIC 236
P L +ME+ + D V++ LC+ + A L + N+ I PD
Sbjct: 220 EPDLALNLLNKMEKG-KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEK 296
LI C G+ +A RL +M V +N ++D +K + EAEK
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL-------IEAEK 331
Query: 297 VLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356
+ +M + N+ T+N LI+ C R ++A ++F M C P+ T+ LI
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391
Query: 357 QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE 416
+A +V +G E+ M G Y + + A VF++M +DG +P+
Sbjct: 392 KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIM 451
Query: 417 TYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKG 469
TY+ L+ C + +++KA +F+ ++ +E Y + + K V+ G
Sbjct: 452 TYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDG 504
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 136/326 (41%), Gaps = 46/326 (14%)
Query: 127 FSHTDETLSFFTDY---------------------FGRRKDFKAIHDFLVDNKEVLGPKT 165
+ H D+ L+ FT+ +GR D + +++ K T
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT 312
Query: 166 LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT 225
S ID + G+ + F+ M +R D +V NG+ + ++L D
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEM-----IQRSIDP-NIVTYNSLINGFCMH-DRL--DE 363
Query: 226 ANEIF---------PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILD 276
A +IF PD + LI G+C K+ + L R+M R G TV Y +
Sbjct: 364 AQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL-- 421
Query: 277 CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRM 336
+ + D A+ V M +GV N+ T+N L+ LCK + E A+ +F +
Sbjct: 422 -IHGFFQASDC----DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 337 GEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERI 396
+ P+ T+ ++ + + +A +V +G ++ + G Y ++ C
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 397 EQAMSVFEKMKTDGHNPDSETYDLLM 422
E+A ++F KMK DG PDS TY+ L+
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLI 562
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 7/199 (3%)
Query: 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307
K D +M G YN +++C LCR+ S A +L M G
Sbjct: 80 KFDLVISFGEKMEILGVSHNLYTYNIMINC---LCRRSQL----SFALAILGKMMKLGYG 132
Query: 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367
++ T N L++ C R +A+ L +M E G P+ TF L+ L+Q + E +
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192
Query: 368 IDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427
++RM G Y + LC + A+++ KM+ D Y ++ C
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252
Query: 428 HNRVDKANALFDEAVRNGV 446
+ VD A LF E G+
Sbjct: 253 YRHVDDALNLFTEMDNKGI 271
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307
KLDEA L EM + V ++ +L ++K+ +K D + S EK ME GV
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKM-KKFD--LVISFGEK----MEILGVS 97
Query: 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367
N+ T+N++I+ LC+ + A+ + +M + G P+ T L+ R+ E +
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVAL 157
Query: 368 IDRMKSAGYAIGKKDYYEFLTRLCGI---ERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424
+D+M GY + D F T + G+ + +A+++ E+M G PD TY ++
Sbjct: 158 VDQMVEMGY---QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214
Query: 425 WCAHNRVDKANALFDEAVRNGVEVKPKEY 453
C D A L ++ + +E Y
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIY 243
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 7/206 (3%)
Query: 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEK 296
+++I C +L A + +M + G+ V N +L+ C R+ SEA
Sbjct: 104 NIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLN---GFCHGN---RI-SEAVA 156
Query: 297 VLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356
++ M G + TF L+ L + ++ +A+ L RM GC P+ T+ +I L
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 216
Query: 357 QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE 416
+ ++++M+ Y + LC ++ A+++F +M G PD
Sbjct: 217 KRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVF 276
Query: 417 TYDLLMTKWCAHNRVDKANALFDEAV 442
TY L++ C + R A+ L + +
Sbjct: 277 TYSSLISCLCNYGRWSDASRLLSDML 302
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239
T + GFF+ D D+ ++V +++ +G + P+ + L
Sbjct: 420 TLIHGFFQ--------ASDCDNAQMVFKQMVSDG---------------VHPNIMTYNTL 456
Query: 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLL 299
+ G C +GKL++A + + + E YN + + + K + +D + L
Sbjct: 457 LDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL-------FC 509
Query: 300 DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA 359
+ GV +V +N +IS CK E+A LF +M E G P+ T+ LI++ +
Sbjct: 510 SLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDG 569
Query: 360 RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399
E+I M+S +A G Y +T + R+++
Sbjct: 570 DKAASAELIKEMRSCRFA-GDASTYGLVTDMLHDGRLDKG 608
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 132/292 (45%), Gaps = 9/292 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T S ++ R + F+++ GFK + + ++ LC+N + ++A +L
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQI-LGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQ 213
Query: 225 TA-NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
N P+ + L+ G C G+ +A L R+M + E + + ++D K+ +
Sbjct: 214 MGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK 273
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
+ E V++ M V +V T+ LI+ LC ++A ++FY M GC+P
Sbjct: 274 LMEA----KELYNVMIQMS---VYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYP 326
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
NE + LI ++ RV +G ++ M G Y + C + R + A VF
Sbjct: 327 NEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVF 386
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+M + PD TY++L+ C + +V+KA +F+ + +++ Y +
Sbjct: 387 NQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTI 438
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 120/284 (42%), Gaps = 9/284 (3%)
Query: 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-P 231
+ + R V+ FE+M+ G + +V+ +C + A + F P
Sbjct: 93 IAKMNRYDVVISLFEQMQ-ILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEP 151
Query: 232 DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLD 291
D L+ G+C ++++A L ++ GF+ V Y ++ C LC+ +
Sbjct: 152 DLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRC---LCKNRHL---- 204
Query: 292 SEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVL 351
+ A ++ M NG NV T+N L++ LC+I R DA L M + PN TF L
Sbjct: 205 NHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTAL 264
Query: 352 IKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGH 411
I + + ++ E E+ + M Y + LC +++A +F M+ +G
Sbjct: 265 IDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGC 324
Query: 412 NPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
P+ Y L+ +C RV+ +F E + GV Y V
Sbjct: 325 YPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTV 368
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 7/218 (3%)
Query: 228 EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDP 287
++PD LI G C+ G LDEA+++ M R G V Y + + C+ K
Sbjct: 288 SVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL---IHGFCKSK-- 342
Query: 288 FRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT 347
R++ + K+ +M GV N T+ VLI C + R + A ++F +M P+ T
Sbjct: 343 -RVE-DGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRT 400
Query: 348 FLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407
+ VL+ L +V + + + M+ I Y + +C + ++E A +F +
Sbjct: 401 YNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLF 460
Query: 408 TDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
+ G P+ TY +++ +C + +A++LF + +G
Sbjct: 461 SKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDG 498
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 9/255 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + ID V+ G+ + + M + + D + ++ LC G A ++
Sbjct: 260 TFTALIDAFVKVGKLMEAKELYNVMIQMSVYP-DVFTYGSLINGLCMYGLLDEARQMFYL 318
Query: 225 TA-NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
N +P++ I LI G+C ++++ ++ EM + G T+ Y + + C
Sbjct: 319 MERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVL---IQGYCL 375
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
P A++V M P ++ T+NVL+ LC + E A+ +F M +
Sbjct: 376 VGRP----DVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDI 431
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
N T+ ++I+ + + +V + ++ + S G Y ++ C I +A S+F
Sbjct: 432 NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLF 491
Query: 404 EKMKTDGHNPDSETY 418
+KMK DG P+ Y
Sbjct: 492 KKMKEDGFLPNESVY 506
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%)
Query: 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372
F L+S + K+ R + I LF +M G P T +++ + +++ + +M
Sbjct: 86 FTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMM 145
Query: 373 SAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVD 432
G+ + L C RIE A+++F+++ G P+ TY L+ C + ++
Sbjct: 146 KLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLN 205
Query: 433 KANALFDEAVRNG 445
A LF++ NG
Sbjct: 206 HAVELFNQMGTNG 218
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 55/136 (40%)
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
DA+ LF RM P+ F L+ + + R + ++M+ G
Sbjct: 65 NDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIV 124
Query: 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
+ +C + +A KM G PD T+ L+ +C NR++ A ALFD+ + G
Sbjct: 125 MHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGF 184
Query: 447 EVKPKEYRVDPRYLKK 462
+ Y R L K
Sbjct: 185 KPNVVTYTTLIRCLCK 200
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 8/247 (3%)
Query: 202 LRLVVEKLCENGYASYAEKLVKDTANEIFP-DDKICDLLIKGWCVDGKLDEAKRLAREMY 260
L ++ LC++G S A +L N+ F D + + L+ G C GKLDEA R+ +E+
Sbjct: 486 LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL 545
Query: 261 RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320
G + V+YN + +S C KK +LD EA L +M G+ + T+++LI L
Sbjct: 546 GRGCVMDRVSYNTL---ISGCCGKK---KLD-EAFMFLDEMVKRGLKPDNYTYSILICGL 598
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380
+ + E+AI+ + G P+ T+ V+I +A R EG E D M S
Sbjct: 599 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 658
Query: 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
Y + C R+ A+ + E MK G +P+S TY L+ +RV++A LF+E
Sbjct: 659 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 718
Query: 441 AVRNGVE 447
G+E
Sbjct: 719 MRMEGLE 725
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 15/298 (5%)
Query: 162 GPKTLASCIDRLVRAGRPTQVLG-FFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEK 220
G L + I L + G+ ++ L +F+ + + GF D + ++ LCE G A +
Sbjct: 482 GGGLLTTLISGLCKHGKHSKALELWFQFLNK--GFVVDTRTSNALLHGLCEAGKLDEAFR 539
Query: 221 LVKDTANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279
+ K+ D++ + LI G C KLDEA EM + G + Y+ IL C
Sbjct: 540 IQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYS-ILIC-- 596
Query: 280 KLCRKKDPFRLDSEAEKVLL--DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMG 337
F ++ E + D + NG+ +V T++V+I CK R+E+ + F M
Sbjct: 597 ------GLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM 650
Query: 338 EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIE 397
PN + LI++ ++ R+ E+ + MK G + Y + + I R+E
Sbjct: 651 SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 710
Query: 398 QAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+A +FE+M+ +G P+ Y L+ + ++ K L E V Y V
Sbjct: 711 EAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTV 768
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%)
Query: 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352
EA K+ ME GV NV TFN +I L R ++A +M E G P T+ +L+
Sbjct: 291 EAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILV 350
Query: 353 KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHN 412
K L +A R+G+ ++ M G+ Y + + +A+ + + M + G +
Sbjct: 351 KGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLS 410
Query: 413 PDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
S TY+ L+ +C + + D A L E + G V +
Sbjct: 411 LTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSF 451
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 94/215 (43%), Gaps = 14/215 (6%)
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
+ PD + I +C GK++EA +L +M G V +N ++D + R + F
Sbjct: 269 VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAF 328
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
+ M G+ + T+++L+ L + +R DA + M + G PN +
Sbjct: 329 MFKEK-------MVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVY 381
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
LI S +A + + E+ D M S G ++ Y + C + + A + ++M +
Sbjct: 382 NNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 441
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443
G N + ++ ++ C+H +FD A+R
Sbjct: 442 IGFNVNQGSFTSVICLLCSH-------LMFDSALR 469
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 129/325 (39%), Gaps = 12/325 (3%)
Query: 130 TDETLSFFTDYFGRRKDFKAIHDF-LVDNKEVLGPKTLASCI-DRLVRAGRPTQVLGFFE 187
+D + + F R + A+ F ++ NK + KT + + LVRA + F+
Sbjct: 204 SDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD 263
Query: 188 RMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV-KDTANEIFPDDKICDLLIKGWCVD 246
+ + G D + C+ G A KL K + P+ + +I G +
Sbjct: 264 VVCK--GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMC 321
Query: 247 GKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV 306
G+ DEA +M G E + Y+ ++ +++ R D + VL +M G
Sbjct: 322 GRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYF-------VLKEMTKKGF 374
Query: 307 PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDE 366
P NV +N LI + + AI++ M G +T+ LIK + + +
Sbjct: 375 PPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAER 434
Query: 367 MIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426
++ M S G+ + + + + LC + A+ +M +P L++ C
Sbjct: 435 LLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLC 494
Query: 427 AHNRVDKANALFDEAVRNGVEVKPK 451
H + KA L+ + + G V +
Sbjct: 495 KHGKHSKALELWFQFLNKGFVVDTR 519
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 13/291 (4%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERM-ERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVK 223
T + ID L GR + F E+M ER G + + ++V+ L A ++K
Sbjct: 310 TFNTVIDGLGMCGRYDEAFMFKEKMVER--GMEPTLITYSILVKGLTRAKRIGDAYFVLK 367
Query: 224 DTANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282
+ + FP + I + LI + G L++A + M G L + YN + + C
Sbjct: 368 EMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTL---IKGYC 424
Query: 283 RKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH 342
+ AE++L +M G N +F +I LC + A++ M
Sbjct: 425 KNGQA----DNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480
Query: 343 PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSV 402
P LI L + + + E+ + + G+ + + L LC ++++A +
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 540
Query: 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
+++ G D +Y+ L++ C ++D+A DE V+ G +KP Y
Sbjct: 541 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG--LKPDNY 589
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 15/225 (6%)
Query: 234 KICDLLIKGWCVDGKLDEAKRLAREMY-----RGGFELGTVAYNCILDCVSKLCRKKDPF 288
K+ DLLI+ +C K D LA +++ +G F T N +L + L R + F
Sbjct: 202 KMSDLLIEVYCTQFKRDGC-YLALDVFPVLANKGMFPSKTTC-NILL---TSLVRANE-F 255
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
+ EA D+ GV +V F I+ CK + E+A+KLF +M E G PN TF
Sbjct: 256 QKCCEA----FDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTF 311
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
+I L R E ++M G Y + L +RI A V ++M
Sbjct: 312 NTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTK 371
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453
G P+ Y+ L+ + ++KA + D V G+ + Y
Sbjct: 372 KGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTY 416
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 7/192 (3%)
Query: 227 NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKD 286
N + PD ++I G C + +E + EM + TV YN + + CR
Sbjct: 617 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL---IRAYCRSG- 672
Query: 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346
RL S A ++ DM++ G+ N T+ LI + I R E+A LF M G PN
Sbjct: 673 --RL-SMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVF 729
Query: 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM 406
+ LI + ++ + + ++ M S K Y + + +A + +M
Sbjct: 730 HYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEM 789
Query: 407 KTDGHNPDSETY 418
+ G PDS TY
Sbjct: 790 REKGIVPDSITY 801
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 181/447 (40%), Gaps = 36/447 (8%)
Query: 34 PTHYLNFLSKPFSSKPTSNPKTIDDPDQVIARSLSGELLENLEADPLPISQRLHLIFSHV 93
P + F+SK S+P + + ++ L+ L + ++P L H
Sbjct: 6 PKLHALFVSK---SQPVLRAAKVTNEERSTKSKLARSLARAVNSNPWSDELESSLSSLHP 62
Query: 94 TPTPS--LVQSTLNF--SPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKA 149
+ T S V TL P G L F W++ N FSH +++ ++ GR ++
Sbjct: 63 SQTISRTTVLQTLRLIKVPADG---LRFFDWVS-NKGFSHKEQSFFLMLEFLGRARNLNV 118
Query: 150 IHDFLVD-----NKEV-LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLR 203
+FL N V L + S I AG + + F+ M + G +
Sbjct: 119 ARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTM-KQMGISPSVLTFN 177
Query: 204 LVVEKLCENGYASYAEKLVKDTANE--IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261
++ L + G A L + + PD + LI G+C + +DEA R+ ++M
Sbjct: 178 SLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237
Query: 262 GGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDM--EYNGVPRNVETFNVLISN 319
V YN I+D LCR A VL M + V NV ++ L+
Sbjct: 238 YHCNPDVVTYNTIID---GLCRAGKV----KIAHNVLSGMLKKATDVHPNVVSYTTLVRG 290
Query: 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYA 377
C + ++A+ +F+ M G PN T+ LIK L +A R E +++ A +A
Sbjct: 291 YCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFA 350
Query: 378 IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANAL 437
+ + C ++ AM VF++M +PDS +Y +L+ C N D+A L
Sbjct: 351 PDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETL 410
Query: 438 FDEAVRNGV-----EVKPKEYRVDPRY 459
F+E V E KP +P +
Sbjct: 411 FNELFEKEVLLGKDECKPLAAAYNPMF 437
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 10/239 (4%)
Query: 207 EKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
E LC NG AEK+ + D LI G C +GK A L M R F
Sbjct: 438 EYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYELLVLMLRREFVP 497
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326
Y ++D + K+ L + + +L Y V TF+ +++ L K + +
Sbjct: 498 DLETYELLIDGLLKIGEA----LLAHDTLQRMLRSSYLPVA---TTFHSVLAELAKRKFA 550
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
++ L M E N +++ L+ +A+ + ++ + GY + + E
Sbjct: 551 NESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYDNGYLVKME---EL 607
Query: 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
L LC ++ A ++ D +T + ++ C H R +A +L++E V G
Sbjct: 608 LGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYNELVELG 666
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368
+++T N +I LCK +R +A L+ + E G H + +VL +L A + E +
Sbjct: 635 DIDTCNTVIEGLCKHKRHSEAFSLYNELVELGNHQQLSCHVVLRNALEAAGKWEELQFVS 694
Query: 369 DRMKS 373
RM +
Sbjct: 695 KRMAT 699
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 30/329 (9%)
Query: 132 ETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPK----TLASCIDRLVRAGRPTQVLGFFE 187
+T S G+R+D ++ L+ E LG K T CI L RAG+ + +
Sbjct: 224 QTYSSLMVGLGKRRDIDSVMG-LLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILK 282
Query: 188 RMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF---------PDDKICDL 238
RM+ D G D + ++++ LC A KL D A E+F PD
Sbjct: 283 RMD-DEGCGPDVVTYTVLIDALCT------ARKL--DCAKEVFEKMKTGRHKPDRVTYIT 333
Query: 239 LIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVL 298
L+ + + LD K+ EM + G V + ++D LC+ + EA L
Sbjct: 334 LLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVD---ALCKAGNF----GEAFDTL 386
Query: 299 LDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358
M G+ N+ T+N LI L ++ R +DA++LF M G P T++V I ++
Sbjct: 387 DVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKS 446
Query: 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETY 418
E ++MK+ G A L L R +A +F +K G PDS TY
Sbjct: 447 GDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTY 506
Query: 419 DLLMTKWCAHNRVDKANALFDEAVRNGVE 447
+++M + +D+A L E + NG E
Sbjct: 507 NMMMKCYSKVGEIDEAIKLLSEMMENGCE 535
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 134/313 (42%), Gaps = 17/313 (5%)
Query: 156 DNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215
D +L P SC V R FE+ +D G + + L++ L E
Sbjct: 747 DGDSILVPIIRYSCKHNNVSGART-----LFEKFTKDLGVQPKLPTYNLLIGGLLEADMI 801
Query: 216 SYAEKL---VKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN 272
A+ + VK T PD + L+ + GK+DE L +EM E T+ +N
Sbjct: 802 EIAQDVFLQVKSTG--CIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHN 859
Query: 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL 332
++ + K D L + ++ D +++ P T+ LI L K R +A +L
Sbjct: 860 IVISGLVKAGNVDDALDLYYD---LMSDRDFS--PTAC-TYGPLIDGLSKSGRLYEAKQL 913
Query: 333 FYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392
F M ++GC PN + +LI +A + RM G K Y + LC
Sbjct: 914 FEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCM 973
Query: 393 IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKE 452
+ R+++ + F+++K G NPD Y+L++ +R+++A LF+E ++ + P
Sbjct: 974 VGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNE-MKTSRGITPDL 1032
Query: 453 YRVDPRYLKKPIA 465
Y + L IA
Sbjct: 1033 YTYNSLILNLGIA 1045
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 7/207 (3%)
Query: 239 LIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVL 298
+ K V G L +A R+M GF L +YN ++ + K R +EA +V
Sbjct: 159 IFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLK-------SRFCTEAMEVY 211
Query: 299 LDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358
M G +++T++ L+ L K R + + L M G PN TF + I+ L +A
Sbjct: 212 RRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRA 271
Query: 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETY 418
++ E E++ RM G Y + LC +++ A VFEKMKT H PD TY
Sbjct: 272 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Query: 419 DLLMTKWCAHNRVDKANALFDEAVRNG 445
L+ ++ + +D + E ++G
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 9/277 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENG-YASYAEKLVK 223
T + I L+R R L F ME G K + + ++ ++G S E K
Sbjct: 400 TYNTLICGLLRVHRLDDALELFGNME-SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458
Query: 224 DTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
I P+ C+ + G+ EAK++ + G +V YN ++ C SK+
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
EA K+L +M NG +V N LI+ L K R ++A K+F RM E P
Sbjct: 519 I-------DEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
T+ L+ L + ++ E E+ + M G + LC + + A+ +
Sbjct: 572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKML 631
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
KM G PD TY+ ++ + +V +A F +
Sbjct: 632 FKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ 668
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 136/325 (41%), Gaps = 20/325 (6%)
Query: 130 TDETLSFFTDYFGRRKD-FKAIHDFLVDNKEVLGPKTLA--SCIDRLVRAGRPTQVLGFF 186
T T F DY+G+ D A+ F + + P +A + + L +AGR + F
Sbjct: 432 TAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF 491
Query: 187 ERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA-NEIFPDDKICDLLIKGWCV 245
+ +D G D + ++++ + G A KL+ + N PD + + LI
Sbjct: 492 YGL-KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYK 550
Query: 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG 305
++DEA ++ M + V YN +L + K + + EA ++ M G
Sbjct: 551 ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQ-------EAIELFEGMVQKG 603
Query: 306 VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGD 365
P N TFN L LCK A+K+ ++M + GC P+ T+ +I L + +V E
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAM 663
Query: 366 EMIDRMKSAGYAIGKKDYYEFLTRLCGIER---IEQAMSVFEK-MKTDGHNPDSETYDLL 421
+MK Y D+ T L G+ + IE A + + P + ++ L
Sbjct: 664 CFFHQMKKLVYP----DFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDL 719
Query: 422 MTKWCAHNRVDKANALFDEAVRNGV 446
+ A +D A + + V NG+
Sbjct: 720 IGSILAEAGIDNAVSFSERLVANGI 744
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 119/261 (45%), Gaps = 17/261 (6%)
Query: 154 LVDNKEVLGPK----TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209
L N E LG K T ID ++G L FE+M+ G + + + L
Sbjct: 420 LFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK-GIAPNIVACNASLYSL 478
Query: 210 CENGYASYAEKL---VKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
+ G A+++ +KD + PD ++++K + G++DEA +L EM G E
Sbjct: 479 AKAGRDREAKQIFYGLKDIG--LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP 536
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326
+ N +++ + K R+D EA K+ + M+ + V T+N L++ L K +
Sbjct: 537 DVIVVNSLINTLYK------ADRVD-EAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKI 589
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
++AI+LF M + GC PN TF L L + V +M+ +M G Y
Sbjct: 590 QEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTI 649
Query: 387 LTRLCGIERIEQAMSVFEKMK 407
+ L ++++AM F +MK
Sbjct: 650 IFGLVKNGQVKEAMCFFHQMK 670
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 108/258 (41%), Gaps = 43/258 (16%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T ID L ++GR + FE M DYG + + +++ + G A A L K
Sbjct: 893 TYGPLIDGLSKSGRLYEAKQLFEGM-LDYGCRPNCAIYNILINGFGKAGEADAACALFKR 951
Query: 225 TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
E + PD K +L+ C+ G++DE +E+ G V YN I++ + K R
Sbjct: 952 MVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHR 1011
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
++ L +E + G+ ++ T+N LI NL E+A K++ + G P
Sbjct: 1012 LEEALVLFNEMKTS------RGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
N TF LI+ GY++ K E A +V+
Sbjct: 1066 NVFTFNALIR---------------------GYSLSGKP--------------EHAYAVY 1090
Query: 404 EKMKTDGHNPDSETYDLL 421
+ M T G +P++ TY+ L
Sbjct: 1091 QTMVTGGFSPNTGTYEQL 1108
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 128/337 (37%), Gaps = 47/337 (13%)
Query: 121 LTQNANFSHTDETLSFFTDYF---GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAG 177
+ N N HT ET ++ + G+ ++ + D + T + L G
Sbjct: 108 VAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKG 167
Query: 178 RPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-PDDKIC 236
Q +M R++GF + S ++ L ++ + + A ++ + E F P +
Sbjct: 168 GLKQAPYALRKM-REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTY 226
Query: 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEK 296
L+ G +D L +EM G + + C+ L R +EA +
Sbjct: 227 SSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTI---CIRVLGRAGKI----NEAYE 279
Query: 297 VLLDMEYNGVPRNVETFNVLISNLCKIR-------------------------------- 324
+L M+ G +V T+ VLI LC R
Sbjct: 280 ILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFS 339
Query: 325 --RSEDAIKLFYRMGEWGCH-PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK 381
R D++K F+ E H P+ TF +L+ +L +A GE + +D M+ G
Sbjct: 340 DNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLH 399
Query: 382 DYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETY 418
Y + L + R++ A+ +F M++ G P + TY
Sbjct: 400 TYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 147/341 (43%), Gaps = 14/341 (4%)
Query: 122 TQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEV---LGPKTLASCIDRLVRAGR 178
+Q F+H + T S D R K F A+ L K + + R+
Sbjct: 80 SQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDL 139
Query: 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF--PDDKIC 236
+V+ F ++ K +++ + L ++G + + KL+ + + P+ I
Sbjct: 140 HDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIF 199
Query: 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAE 295
++L+K C +G ++ A + EM R G ++ Y+ ++DC+ R K EA
Sbjct: 200 NILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSK-------EAV 252
Query: 296 KVLLDM-EYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKS 354
++ DM G+ + TFNV+I+ C+ E A K+ M + GC+PN + L+
Sbjct: 253 ELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNG 312
Query: 355 LYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD 414
+ ++ E + D +K G + Y + C ++AM + +MK D
Sbjct: 313 FCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRAD 372
Query: 415 SETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+ TY++++ + R ++A + D+ GV + YR+
Sbjct: 373 TLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRI 413
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 14/282 (4%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV-- 222
T ++ +D L R + + FE M G D + +++ C G A+K++
Sbjct: 234 TYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDF 293
Query: 223 --KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280
K+ N P+ L+ G+C GK+ EAK+ E+ + G +L TV Y +++C
Sbjct: 294 MKKNGCN---PNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNC--- 347
Query: 281 LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG 340
CR + EA K+L +M+ + + T+NV++ L RSE+A+++ + G G
Sbjct: 348 FCRNGET----DEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEG 403
Query: 341 CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAM 400
H N+ ++ +++ +L + + + + M G + E + RLC E +
Sbjct: 404 VHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGV 463
Query: 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAV 442
V G P +++ ++ C ++ L D V
Sbjct: 464 RVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLV 505
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 101/233 (43%), Gaps = 9/233 (3%)
Query: 142 GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS 201
G + K I DF+ N ++ ++ + G+ + F+ +++ G K D
Sbjct: 282 GEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKT-GLKLDTVG 340
Query: 202 LRLVVEKLCENGYASYAEKLVKDT-ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMY 260
++ C NG A KL+ + A+ D +++++G +G+ +EA ++ +
Sbjct: 341 YTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWG 400
Query: 261 RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320
G L +Y IL+ LC + +A K L M G+ + T+N L+ L
Sbjct: 401 SEGVHLNKGSYRIILN---ALCCNGEL----EKAVKFLSVMSERGIWPHHATWNELVVRL 453
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373
C+ +E +++ G P ++ +++S+ + ++ E++D + S
Sbjct: 454 CESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLVS 506
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 136/334 (40%), Gaps = 30/334 (8%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + I L R R ++ + +RM G + D + +VV LC+ G A L+K
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVK-GCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246
Query: 225 T-ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+I P I + +I C +++A L EM G V YN ++ C+ R
Sbjct: 247 MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 306
Query: 284 KKDPFRLDS----------------------------EAEKVLLDMEYNGVPRNVETFNV 315
D RL S EAEK+ +M + ++ T++
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 366
Query: 316 LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375
LI+ C R ++A +F M C PN T+ LIK +A RV EG E+ M G
Sbjct: 367 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426
Query: 376 YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN 435
Y + + A VF++M +DG PD TY +L+ C + +V+ A
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486
Query: 436 ALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKG 469
+F+ R+ +E Y + + K V+ G
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG 520
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 122/287 (42%), Gaps = 9/287 (3%)
Query: 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKL 221
G + ID L L F M+ + G + + + ++ LC G S A +L
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTEMD-NKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 222 VKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280
+ D +I P+ LI + +GKL EA++L EM + + Y+ + ++
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL---ING 370
Query: 281 LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG 340
C RLD L + + P NV T+N LI CK +R ++ ++LF M + G
Sbjct: 371 FCMHD---RLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426
Query: 341 CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAM 400
N T+ LI +QA + +M S G Y L LC ++E A+
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486
Query: 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
VFE ++ PD TY++++ C +V+ LF GV+
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 146/336 (43%), Gaps = 38/336 (11%)
Query: 113 AILGFNHWLTQNANFSHTDETLSFFTDY---------------------FGRRKDFKAIH 151
++ +N + N+ + ++ L+ FT+ +GR D +
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 314
Query: 152 DFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD----SLRLVVE 207
+++ K T ++ ID V+ G+ + ++ M KR D + ++
Sbjct: 315 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-----IKRSIDPDIFTYSSLIN 369
Query: 208 KLCENGYASYAEKLVK-DTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266
C + A+ + + + + FP+ + LIKG+C ++DE L REM + G
Sbjct: 370 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG 429
Query: 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326
TV Y ++ + R+ D A+ V M +GV ++ T+++L+ LC +
Sbjct: 430 NTVTYTTLIHGFFQ-ARECD------NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKV 482
Query: 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386
E A+ +F + P+ T+ ++I+ + +A +V +G ++ + G Y
Sbjct: 483 ETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 542
Query: 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLM 422
++ C E+A ++F +MK +G PDS TY+ L+
Sbjct: 543 MSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 7/199 (3%)
Query: 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307
K D L +M G Y+ +++C CR+ S A VL M G
Sbjct: 96 KFDLVISLGEQMQNLGISHNLYTYSILINC---FCRRSQL----SLALAVLAKMMKLGYE 148
Query: 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367
++ T N L++ C R DA+ L +M E G P+ TF LI L++ R E +
Sbjct: 149 PDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVAL 208
Query: 368 IDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427
+DRM G Y + LC I+ A+S+ +KM+ P Y+ ++ C
Sbjct: 209 VDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCN 268
Query: 428 HNRVDKANALFDEAVRNGV 446
+ V+ A LF E G+
Sbjct: 269 YKNVNDALNLFTEMDNKGI 287
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 7/205 (3%)
Query: 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
+LI +C +L A + +M + G+E V N +L+ R D L +
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ---- 176
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
+++M Y P + TFN LI L + R+ +A+ L RM GC P+ T+ +++ L +
Sbjct: 177 MVEMGYQ--PDSF-TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCK 233
Query: 358 AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET 417
+ ++ +M+ G Y + LC + + A+++F +M G P+ T
Sbjct: 234 RGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 293
Query: 418 YDLLMTKWCAHNRVDKANALFDEAV 442
Y+ L+ C + R A+ L + +
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMI 318
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/354 (19%), Positives = 143/354 (40%), Gaps = 30/354 (8%)
Query: 112 RAILGFNHWLTQNANFSHTDETLSFFT-DYFGRRKDFKAI-----HDFLVDNKEVLGPKT 165
R++LG T +FSH SF+ D+ G R D++ I +D +D+ L
Sbjct: 17 RSLLGKGKCGTAPPSFSHC----SFWVRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDM 72
Query: 166 LAS-----------CIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGY 214
+ S + + + + V+ E+M+ + G + + +++ C
Sbjct: 73 VKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQ 131
Query: 215 ASYAEKLVKDTANEIF-PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNC 273
S A ++ + PD + L+ G+C ++ +A L +M G++ + +N
Sbjct: 132 LSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT 191
Query: 274 ILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLF 333
++ + + R SEA ++ M G ++ T+ ++++ LCK + A+ L
Sbjct: 192 LIHGLFRHNRA-------SEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244
Query: 334 YRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393
+M + P + +I +L V + + M + G Y + LC
Sbjct: 245 KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 304
Query: 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
R A + M NP+ T+ L+ + ++ +A L+DE ++ ++
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239
T + GFF+ R+ D+ ++V +++ +G + PD +L
Sbjct: 436 TLIHGFFQ--------ARECDNAQIVFKQMVSDG---------------VLPDIMTYSIL 472
Query: 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLL 299
+ G C +GK++ A + + R E YN +++ + K + +D + L
Sbjct: 473 LDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDL-------FC 525
Query: 300 DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA 359
+ GV NV T+ ++S C+ E+A LF M E G P+ T+ LI++ +
Sbjct: 526 SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585
Query: 360 RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399
E+I M+S + +G +T + R++++
Sbjct: 586 DKAASAELIREMRSCRF-VGDASTIGLVTNMLHDGRLDKS 624
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 125/264 (47%), Gaps = 7/264 (2%)
Query: 186 FERMERD--YGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKG 242
FE +R YG+K S + ++ L + ++ E + K+ +I P+ +++I
Sbjct: 173 FEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINA 232
Query: 243 WCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDME 302
C GK+++A+ + +M G V+YN ++D KL ++ D+ VL +M
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADA----VLKEMV 288
Query: 303 YNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVG 362
N V N+ TFN+LI K ++K+F M + PN ++ LI L ++
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKIS 348
Query: 363 EGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLM 422
E M D+M SAG Y + C + +++A+ +F +K G P + Y++L+
Sbjct: 349 EAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLI 408
Query: 423 TKWCAHNRVDKANALFDEAVRNGV 446
+C ++D AL +E R G+
Sbjct: 409 DAYCKLGKIDDGFALKEEMEREGI 432
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 144/331 (43%), Gaps = 22/331 (6%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCE---NGYASYAEKL 221
T I+ L + G+ + E M + YG + S +++ C+ NG A+ +
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDM-KVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAV 283
Query: 222 VKDTA-NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280
+K+ N++ P+ ++LI G+ D L + ++ +EM + ++YN + ++
Sbjct: 284 LKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL---ING 340
Query: 281 LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG 340
LC SEA + M GV N+ T+N LI+ CK ++A+ +F + G
Sbjct: 341 LCNGGKI----SEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396
Query: 341 CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAM 400
P + +LI + + ++ +G + + M+ G Y + LC IE A
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAK 456
Query: 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYL 460
+F+++ + G PD T+ +LM +C KA L E + G++ PR+L
Sbjct: 457 KLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLK---------PRHL 506
Query: 461 KKPIAVKKGKKRETLPEKMARKRRRLKQIRL 491
I +K K L + + K+ RL
Sbjct: 507 TYNIVMKGYCKEGNLKAATNMRTQMEKERRL 537
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI 229
ID + G+ E MER+ G D + ++ LC NG A+KL ++
Sbjct: 408 IDAYCKLGKIDDGFALKEEMERE-GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Query: 230 FPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFR 289
PD +L++G+C G+ +A L +EM + G + + YN ++ K K
Sbjct: 467 LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATN 526
Query: 290 LDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFL 349
+ ++ EK + NV ++NVL+ + + EDA L M E G PN T+
Sbjct: 527 MRTQMEK------ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYE 580
Query: 350 VL 351
++
Sbjct: 581 IV 582
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 122/284 (42%), Gaps = 9/284 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
+ ++ ++ R G +V E M+R G K + ++ LC + AE+ +
Sbjct: 283 SYSTVVNGYCRFGELDKVWKLIEVMKRK-GLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 225 TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ I PD + LI G+C G + A + EM+ + Y I +S C+
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI---ISGFCQ 398
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
D EA K+ +M G+ + TF LI+ CK +DA ++ M + GC P
Sbjct: 399 IGDMV----EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 454
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
N T+ LI L + + +E++ M G Y + LC IE+A+ +
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447
+ + G N D+ TY LM +C +DKA + E + G++
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 558
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 120/281 (42%), Gaps = 9/281 (3%)
Query: 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT- 225
S I L R + + F M R G D +++ C+ G A K +
Sbjct: 320 GSIIGLLCRICKLAEAEEAFSEMIRQ-GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH 378
Query: 226 ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKK 285
+ +I PD +I G+C G + EA +L EM+ G E +V + +++ K K
Sbjct: 379 SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 438
Query: 286 DPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345
D FR+ + M G NV T+ LI LCK + A +L + M + G PN
Sbjct: 439 DAFRVHNH-------MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNI 491
Query: 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405
T+ ++ L ++ + E +++ ++AG Y + C +++A + ++
Sbjct: 492 FTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551
Query: 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
M G P T+++LM +C H ++ L + + G+
Sbjct: 552 MLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 592
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 133/321 (41%), Gaps = 12/321 (3%)
Query: 139 DYFGRRKDFKAIHDFLVD-NKEVLGPKTLA--SCIDRLVRAGRPTQVLGFFERMERDYGF 195
D F +R D +A F + + + P L + I + G + F M G
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK-GL 417
Query: 196 KRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKR 254
+ D + ++ C+ G+ A ++ P+ LI G C +G LD A
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477
Query: 255 LAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFN 314
L EM++ G + YN I V+ LC+ + EA K++ + E G+ + T+
Sbjct: 478 LLHEMWKIGLQPNIFTYNSI---VNGLCKSGNI----EEAVKLVGEFEAAGLNADTVTYT 530
Query: 315 VLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374
L+ CK + A ++ M G P TF VL+ + +G+++++ M +
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKA 434
G A + + + C ++ A ++++ M + G PD +TY+ L+ C + +A
Sbjct: 591 GIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA 650
Query: 435 NALFDEAVRNGVEVKPKEYRV 455
LF E G V Y V
Sbjct: 651 WFLFQEMKGKGFSVSVSTYSV 671
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 122/276 (44%), Gaps = 18/276 (6%)
Query: 205 VVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG 263
+++ LC+ G A +L+ + + P+ + ++ G C G ++EA +L E G
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 264 FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI 323
TV Y ++D C+ + +A+++L +M G+ + TFNVL++ C
Sbjct: 522 LNADTVTYTTLMD---AYCKSGEM----DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574
Query: 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383
ED KL M G PN TTF L+K + + M S G K Y
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634
Query: 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443
+ C +++A +F++MK G + TY +L+ + + +A +FD+ R
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694
Query: 444 NGVEVKPK--EYRVDPRYLKKPIAVKKGKKRETLPE 477
G+ + ++ D +Y KGK+ +T+ +
Sbjct: 695 EGLAADKEIFDFFSDTKY--------KGKRPDTIVD 722
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 125/306 (40%), Gaps = 13/306 (4%)
Query: 142 GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS 201
G KD +H+ ++ T + ID L + G M + G + + +
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK-IGLQPNIFT 493
Query: 202 LRLVVEKLCENGYASYAEKLVKD-TANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMY 260
+V LC++G A KLV + A + D L+ +C G++D+A+ + +EM
Sbjct: 494 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEML 553
Query: 261 RGGFELGTVAYNCILD--CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLIS 318
G + V +N +++ C+ + + EK+L M G+ N TFN L+
Sbjct: 554 GKGLQPTIVTFNVLMNGFCLHGMLE---------DGEKLLNWMLAKGIAPNATTFNSLVK 604
Query: 319 NLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI 378
C + A ++ M G P+ T+ L+K +A + E + MK G+++
Sbjct: 605 QYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSV 664
Query: 379 GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALF 438
Y + ++ +A VF++M+ +G D E +D R D
Sbjct: 665 SVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPI 724
Query: 439 DEAVRN 444
DE + N
Sbjct: 725 DEIIEN 730
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 12/212 (5%)
Query: 232 DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLD 291
D ++ D+ + G L EA+R+ +M G L + N L +SK C K
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKT------ 227
Query: 292 SEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVL 351
+ A V + GV NV ++N++I +C++ R ++A L M G P+ ++ +
Sbjct: 228 ATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTV 287
Query: 352 IKSLYQAARVGEGD---EMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
+ R GE D ++I+ MK G Y + LC I ++ +A F +M
Sbjct: 288 VNGY---CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR 344
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
G PD+ Y L+ +C + A+ F E
Sbjct: 345 QGILPDTVVYTTLIDGFCKRGDIRAASKFFYE 376
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 7/191 (3%)
Query: 257 REMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVL 316
RE G +YN ++ V +L R K EA +LL ME G +V +++ +
Sbjct: 235 REFPEVGVCWNVASYNIVIHFVCQLGRIK-------EAHHLLLLMELKGYTPDVISYSTV 287
Query: 317 ISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY 376
++ C+ + KL M G PN + +I L + ++ E +E M G
Sbjct: 288 VNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347
Query: 377 AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436
Y + C I A F +M + PD TY +++ +C + +A
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 407
Query: 437 LFDEAVRNGVE 447
LF E G+E
Sbjct: 408 LFHEMFCKGLE 418
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
Query: 288 FRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK-IRRSEDAIKLFYRMGEWGCHPNET 346
F L EA +V M G+ +V++ NV ++ L K ++ AI +F E G N
Sbjct: 188 FGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVA 247
Query: 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM 406
++ ++I + Q R+ E ++ M+ GY Y + C +++ + E M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 407 KTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446
K G P+S Y ++ C ++ +A F E +R G+
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 147/315 (46%), Gaps = 13/315 (4%)
Query: 142 GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS 201
GR + A+ + +V + T + ++ + + G L +ME + K D
Sbjct: 240 GRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH-IKPDVVI 298
Query: 202 LRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMY 260
++++LC++G+ S A+ L + + I P+ + +I G+C G+ +A+RL R+M
Sbjct: 299 YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMI 358
Query: 261 RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320
+ +N + +S ++ F EAEK+ +M + + + T+N +I
Sbjct: 359 EREINPDVLTFNAL---ISASVKEGKLF----EAEKLCDEMLHRCIFPDTVTYNSMIYGF 411
Query: 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380
CK R +DA +F M P+ TF +I +A RV EG +++ + G
Sbjct: 412 CKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANT 467
Query: 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440
Y + C ++ + A +F++M + G PD+ T ++L+ +C + ++++A LF+
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527
Query: 441 AVRNGVEVKPKEYRV 455
+ +++ Y +
Sbjct: 528 IQMSKIDLDTVAYNI 542
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 108/214 (50%), Gaps = 9/214 (4%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + ID RA R + + + R G + + ++ CE + A+ L ++
Sbjct: 434 TFNTIIDVYCRAKRVDEGMQLLREISR-RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQE 492
Query: 225 -TANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
++ + PD C++L+ G+C + KL+EA L + +L TVAYN I + +C+
Sbjct: 493 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNII---IHGMCK 549
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
++D EA + + +GV +V+T+NV+IS C DA LF++M + G P
Sbjct: 550 GS---KVD-EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 605
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA 377
+ +T+ LI+ +A + + E+I M+S G++
Sbjct: 606 DNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFS 639
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 34/331 (10%)
Query: 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA 226
++ IDRL + G + F M + G + + +++ C G S A++L++D
Sbjct: 300 SAIIDRLCKDGHHSDAQYLFSEM-LEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMI 358
Query: 227 N-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCIL---------- 275
EI PD + LI +GKL EA++L EM TV YN ++
Sbjct: 359 EREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFD 418
Query: 276 ------------------DCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLI 317
+ CR K R+D E ++L ++ G+ N T+N LI
Sbjct: 419 DAKHMFDLMASPDVVTFNTIIDVYCRAK---RVD-EGMQLLREISRRGLVANTTTYNTLI 474
Query: 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA 377
C++ A LF M G P+ T +L+ + ++ E E+ + ++ +
Sbjct: 475 HGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKID 534
Query: 378 IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANAL 437
+ Y + +C ++++A +F + G PD +TY+++++ +C + + AN L
Sbjct: 535 LDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVL 594
Query: 438 FDEAVRNGVEVKPKEYRVDPRYLKKPIAVKK 468
F + NG E Y R K + K
Sbjct: 595 FHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 7/215 (3%)
Query: 231 PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRL 290
PD + +I +C ++DE +L RE+ R G T YN + + C +
Sbjct: 430 PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL---IHGFCEVDNL--- 483
Query: 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLV 350
+ A+ + +M +GV + T N+L+ C+ + E+A++LF + + + +
Sbjct: 484 -NAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 542
Query: 351 LIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG 410
+I + + ++V E ++ + G + Y ++ CG I A +F KMK +G
Sbjct: 543 IIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNG 602
Query: 411 HNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445
H PD+ TY+ L+ +DK+ L E NG
Sbjct: 603 HEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG 637
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 154/435 (35%), Gaps = 105/435 (24%)
Query: 97 PSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVD 156
PSL Q T F E + G +H+ F D+ + FF DY R + F VD
Sbjct: 63 PSLTQVT--FEGEELKLKSG-SHY------FKSLDDAIDFF-DYMVRSRPFYTA----VD 108
Query: 157 NKEVLGPKTLASCIDRLVRAGRPTQVLGFFERME-------------------------- 190
+V+G VR RP + + +ME
Sbjct: 109 CNKVIGV---------FVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSF 159
Query: 191 --------RDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPD-----DKICD 237
GF+ D + ++ LC S A L F + D++ +
Sbjct: 160 SLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVE 219
Query: 238 L-----------LIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKD 286
+ LI G C++G++ EA L +M G + V Y I++ + K+ K
Sbjct: 220 IGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKS 279
Query: 287 PFRL----------------------------DSEAEKVLLDMEYNGVPRNVETFNVLIS 318
L S+A+ + +M G+ NV T+N +I
Sbjct: 280 ALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID 339
Query: 319 NLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI 378
C R DA +L M E +P+ TF LI + + ++ E +++ D M
Sbjct: 340 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFP 399
Query: 379 GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALF 438
Y + C R + A +F+ M + PD T++ ++ +C RVD+ L
Sbjct: 400 DTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLL 455
Query: 439 DEAVRNGVEVKPKEY 453
E R G+ Y
Sbjct: 456 REISRRGLVANTTTY 470
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 14/300 (4%)
Query: 157 NKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYAS 216
N+ GP C ++G+ + +ME + K D ++++ LC++G
Sbjct: 211 NEVTYGPVLKVMC-----KSGQTALAMELLRKME-ERKIKLDAVKYSIIIDGLCKDGSLD 264
Query: 217 YAEKLVKDTANEIFPDDKIC-DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCIL 275
A L + + F D I LI+G+C G+ D+ +L R+M + VA++ ++
Sbjct: 265 NAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALI 324
Query: 276 DCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYR 335
DC K + + EAE++ +M G+ + T+ LI CK + + A +
Sbjct: 325 DCFVKEGKLR-------EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDL 377
Query: 336 MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER 395
M GC PN TF +LI +A + +G E+ +M G Y + C + +
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437
Query: 396 IEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+E A +F++M + PD +Y +L+ C + +KA +F++ ++ +E+ Y +
Sbjct: 438 LEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI 497
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 126/287 (43%), Gaps = 9/287 (3%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-E 228
ID L + G F ME GFK D ++ C G KL++D +
Sbjct: 254 IDGLCKDGSLDNAFNLFNEMEIK-GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
I PD LI + +GKL EA+ L +EM + G TV Y ++D C++
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID---GFCKEN--- 366
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
+LD +A +L M G N+ TFN+LI+ CK +D ++LF +M G + T+
Sbjct: 367 QLD-KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTY 425
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
LI+ + ++ E+ M S Y L LC E+A+ +FEK++
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK 485
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
D Y++++ C ++VD A LF GV+ K Y +
Sbjct: 486 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 42/227 (18%)
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
+ D + LI+G+C GKL+ AK L +EM V+Y +LD LC +P
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLD---GLCDNGEP- 473
Query: 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348
+A ++ +E + + ++ +N++I +C + +DA LF + G P+ T+
Sbjct: 474 ---EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530
Query: 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408
++I L + + E D + F KM+
Sbjct: 531 NIMIGGLCKKGSLSEADLL-----------------------------------FRKMEE 555
Query: 409 DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
DGH+P+ TY++L+ K+ L +E R G V ++
Sbjct: 556 DGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKM 602
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%)
Query: 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360
ME G+ N+ T +++I+ C+ R+ A ++ + G P+ TF LI L R
Sbjct: 98 MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157
Query: 361 VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420
V E E++DRM G+ + LC ++ A+ + ++M G P+ TY
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217
Query: 421 LMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
++ C + A L + +++ +Y +
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSI 252
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 7/206 (3%)
Query: 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297
++I C KL A ++ + G+E TV ++ + ++ LC + SEA ++
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTL---INGLCLEGRV----SEALEL 164
Query: 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357
+ M G + T N L++ LC + DA+ L RM E G PNE T+ ++K + +
Sbjct: 165 VDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCK 224
Query: 358 AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET 417
+ + E++ +M+ + Y + LC ++ A ++F +M+ G D
Sbjct: 225 SGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIII 284
Query: 418 YDLLMTKWCAHNRVDKANALFDEAVR 443
Y L+ +C R D L + ++
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIK 310
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 141/355 (39%), Gaps = 65/355 (18%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T S + +G+P + +GF ++M D G + D + L+++ LC+NG A K+
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326
Query: 225 TA------------------------------------NEIFPDDKICDLLIKGWCVDGK 248
N I PD + +LI + GK
Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGK 386
Query: 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF-----RLD------------ 291
+D+A + +M + G V Y ++ + K R +D +D
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446
Query: 292 -----------SEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG 340
AE+++L+M G+ N FN +I + CK R ++ KLF M G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 341 CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAM 400
PN T+ LI A ++ E +++ M S G Y + C I R+E A+
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+F++M++ G +PD TY++++ R A L+ +G +++ Y +
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNI 621
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 19/297 (6%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + I L ++GR + +FE+M D G ++ LC AE+L+ +
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQM-IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILE 466
Query: 225 TANEIFPDDKIC------DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCV 278
D IC + +I C +G++ E+++L M R G + + YN +++
Sbjct: 467 -----MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521
Query: 279 SKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGE 338
L K D EA K+L M G+ N T++ LI+ CKI R EDA+ LF M
Sbjct: 522 C-LAGKMD------EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 339 WGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQ 398
G P+ T+ ++++ L+Q R E+ R+ +G I Y L LC + +
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634
Query: 399 AMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
A+ +F+ + ++ T+++++ R D+A LF NG+ YR+
Sbjct: 635 ALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRL 691
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 114/245 (46%), Gaps = 8/245 (3%)
Query: 205 VVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG 263
+++ C+ G +EKL + + P+ + LI G+C+ GK+DEA +L M G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541
Query: 264 FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI 323
+ TV Y+ +++ K+ R +D L E ME +GV ++ T+N+++ L +
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKE-------MESSGVSPDIITYNIILQGLFQT 594
Query: 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383
RR+ A +L+ R+ E G +T+ +++ L + + +M + + + +
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654
Query: 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443
+ L + R ++A +F ++G P+ TY L+ +++ + LF
Sbjct: 655 NIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMED 714
Query: 444 NGVEV 448
NG V
Sbjct: 715 NGCTV 719
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 41/304 (13%)
Query: 171 DRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF 230
D L+R GR + G R D +DS V + ++ + A+E+
Sbjct: 39 DELLRRGRGASIYGL-NRALADVA----RDSPAAAVSRY---------NRMARAGADEVT 84
Query: 231 PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRL 290
PD +LI C G+LD + + GF + +A+ +L LC K R
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLL---KGLCADK---RT 138
Query: 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGE---WGCHPNETT 347
+ VL M G NV ++N+L+ LC RS++A++L + M + G P+ +
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198
Query: 348 FLVLIKSLYQAARVGEGD---------EMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQ 398
+ +I ++ EGD EM+DR G Y + LC + +++
Sbjct: 199 YTTVINGFFK-----EGDSDKAYSTYHEMLDR----GILPDVVTYNSIIAALCKAQAMDK 249
Query: 399 AMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPR 458
AM V M +G PD TY+ ++ +C+ + +A + +GVE Y +
Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309
Query: 459 YLKK 462
YL K
Sbjct: 310 YLCK 313
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 115/265 (43%), Gaps = 14/265 (5%)
Query: 194 GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI--FPDDKICDLLIKGWCVDGKLDE 251
GF+ D + +++ LC + S A +V E+ P+ ++L+KG C + + E
Sbjct: 117 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQE 176
Query: 252 AKRLAREMY---RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPR 308
A L M GG V+Y + ++ ++ D +A +M G+
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTV---INGFFKEGDS----DKAYSTYHEMLDRGILP 229
Query: 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368
+V T+N +I+ LCK + + A+++ M + G P+ T+ ++ + + E +
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289
Query: 369 DRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428
+M+S G Y + LC R +A +F+ M G P+ TY L+ +
Sbjct: 290 KKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATK 349
Query: 429 NRVDKANALFDEAVRNGVEVKPKEY 453
+ + + L D VRNG+ P Y
Sbjct: 350 GALVEMHGLLDLMVRNGIH--PDHY 372
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 122/291 (41%), Gaps = 12/291 (4%)
Query: 154 LVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENG 213
++D L S ID + GR + FE M R G K + + ++ C G
Sbjct: 467 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAG 525
Query: 214 YASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN 272
A KL+ + + P+ LI G+C ++++A L +EM G + YN
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYN 585
Query: 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL 332
IL + + R + A+++ + + +G + T+N+++ LCK + ++DA+++
Sbjct: 586 IILQGLFQT-------RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQM 638
Query: 333 FYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392
F + TF ++I +L + R E ++ S G Y + G
Sbjct: 639 FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698
Query: 393 IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN---ALFDE 440
+E+ +F M+ +G DS + ++ + + +A ++ DE
Sbjct: 699 QGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 749
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 158/335 (47%), Gaps = 21/335 (6%)
Query: 98 SLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFK---AIHDFL 154
++ ++ +S + +A+ FN W+ + + F HT ET + D G+ +F+ A+ + +
Sbjct: 49 TVCEALTCYSNDWQKALEFFN-WVERESGFRHTTETFNRVIDILGKYFEFEISWALINRM 107
Query: 155 VDNKE-VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENG 213
+ N E V T R V A + + +++++ D+ RD+ S +V+ LCE+
Sbjct: 108 IGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLD-DFNL-RDETSFYNLVDALCEHK 165
Query: 214 YASYAEKLV--KDTANEIFP--DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTV 269
+ AE+L K+ F + KI +L+++GW G + K ++M G
Sbjct: 166 HVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLF 225
Query: 270 AYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDA 329
+Y+ +D +C+ P++ A K+ +M+ + +V +N +I + + E
Sbjct: 226 SYSIYMDI---MCKSGKPWK----AVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFG 278
Query: 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389
I++F M E GC PN T +IK L + R+ + M+D M G Y +R
Sbjct: 279 IRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFSR 338
Query: 390 LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424
L E+ + +S+F +M G P +TY +LM K
Sbjct: 339 L---EKPSEILSLFGRMIRSGVRPKMDTYVMLMRK 370
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 124/292 (42%), Gaps = 9/292 (3%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T S ID + GR + FFE M +D + D + ++ C+ G + ++
Sbjct: 299 TYNSMIDGFGKVGRLDDTVCFFEEM-KDMCCEPDVITYNALINCFCKFGKLPIGLEFYRE 357
Query: 225 T-ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
N + P+ L+ +C +G + +A + +M R G Y ++D K+
Sbjct: 358 MKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGN 417
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343
D FRL +E +V GV NV T+ LI LC R ++A +LF +M G P
Sbjct: 418 LSDAFRLGNEMLQV-------GVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 470
Query: 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403
N ++ LI +A + E+++ +K G Y F+ LC +E+IE A V
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM 530
Query: 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455
+MK G +S Y LM + + L DE +EV + V
Sbjct: 531 NEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCV 582
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 45/319 (14%)
Query: 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224
T + I+ + G+ L F+ M+ + G K + S +V+ C+ G A K D
Sbjct: 334 TYNALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVD 392
Query: 225 TAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283
+ P++ LI C G L +A RL EM + G E V Y ++D + R
Sbjct: 393 MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER 452
Query: 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN------------------------ 319
K EAE++ M+ GV N+ ++N LI
Sbjct: 453 MK-------EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 505
Query: 320 -----------LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368
LC + + E A + M E G N + L+ + +++ EG ++
Sbjct: 506 DLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLL 565
Query: 369 DRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD-GHNPDSETYDLLMTKWCA 427
D MK + + + LC + + +A+ F ++ D G ++ + ++ C
Sbjct: 566 DEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCK 625
Query: 428 HNRVDKANALFDEAVRNGV 446
N+V+ A LF++ V+ G+
Sbjct: 626 DNQVEAATTLFEQMVQKGL 644
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 33/217 (15%)
Query: 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288
I PD + I G C K++ AK + EM G + ++ Y ++D K +
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 562
Query: 289 RLDSEAEKVLLDMEYN-------------------------------GVPRNVETFNVLI 317
L E ++ LD+E G+ N F +I
Sbjct: 563 HLLDEMKE--LDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMI 620
Query: 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA 377
LCK + E A LF +M + G P+ T + L+ ++ V E + D+M G
Sbjct: 621 DGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMK 680
Query: 378 IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD 414
+ Y + L ++++A S E+M +G +PD
Sbjct: 681 LDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 57/140 (40%)
Query: 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373
N L+ K+ +++D + F M G P T+ ++I + + V + + MK
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKF 290
Query: 374 AGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDK 433
G Y + + R++ + FE+MK PD TY+ L+ +C ++
Sbjct: 291 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 350
Query: 434 ANALFDEAVRNGVEVKPKEY 453
+ E NG++ Y
Sbjct: 351 GLEFYREMKGNGLKPNVVSY 370
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 14/202 (6%)
Query: 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE- 228
+D ++G PT+ L + M ++ + + ++++ LC+N S A +N+
Sbjct: 549 MDAYFKSGNPTEGLHLLDEM-KELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607
Query: 229 -IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDP 287
+ + I +I G C D +++ A L +M + G AY ++D
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMD---------GN 658
Query: 288 FRLDSEAEKVLL--DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345
F+ + E + L M G+ ++ + L+ L + + A M G HP+E
Sbjct: 659 FKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 718
Query: 346 TTFLVLIKSLYQAARVGEGDEM 367
+ ++K Y+ + E E+
Sbjct: 719 VLCISVLKKHYELGCIDEAVEL 740
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM---I 368
F+ L S L + E+AI+ F +M + P + L L++ A++G+ D++
Sbjct: 194 VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL---LHRFAKLGKTDDVKRFF 250
Query: 369 DRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428
M AG Y + +C +E A +FE+MK G PD+ TY+ ++ +
Sbjct: 251 KDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKV 310
Query: 429 NRVDKANALFDE 440
R+D F+E
Sbjct: 311 GRLDDTVCFFEE 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,471,875
Number of Sequences: 539616
Number of extensions: 8432109
Number of successful extensions: 25971
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 21567
Number of HSP's gapped (non-prelim): 2015
length of query: 503
length of database: 191,569,459
effective HSP length: 122
effective length of query: 381
effective length of database: 125,736,307
effective search space: 47905532967
effective search space used: 47905532967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)