Query 042598
Match_columns 503
No_of_seqs 569 out of 2995
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.1E-58 8.9E-63 483.8 46.3 359 94-461 434-800 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.2E-58 1.8E-62 481.5 44.9 356 111-482 422-783 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.7E-55 3.8E-60 460.8 37.2 361 98-481 88-454 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-53 2.8E-58 446.7 38.3 366 92-480 118-521 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 9.9E-52 2.1E-56 442.5 37.8 368 87-480 243-616 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.4E-51 9.6E-56 437.5 36.4 368 88-480 143-516 (857)
7 PRK11788 tetratricopeptide rep 99.9 9.8E-21 2.1E-25 186.1 35.3 299 140-451 44-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 9.6E-19 2.1E-23 190.8 42.0 318 109-444 513-832 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-18 2.7E-23 189.9 41.5 335 108-460 478-814 (899)
10 PRK11788 tetratricopeptide rep 99.9 9.3E-19 2E-23 172.1 34.9 297 171-482 43-347 (389)
11 PRK15174 Vi polysaccharide exp 99.8 3E-14 6.6E-19 147.5 41.3 319 110-445 57-382 (656)
12 PRK15174 Vi polysaccharide exp 99.8 1.5E-14 3.3E-19 149.7 38.1 299 133-445 44-348 (656)
13 KOG4422 Uncharacterized conser 99.7 1E-13 2.2E-18 126.6 30.3 328 110-461 130-479 (625)
14 TIGR00990 3a0801s09 mitochondr 99.7 2.1E-12 4.5E-17 134.1 41.8 320 109-445 141-538 (615)
15 TIGR00990 3a0801s09 mitochondr 99.6 5.2E-12 1.1E-16 131.2 40.7 298 134-445 130-497 (615)
16 PRK10049 pgaA outer membrane p 99.6 1.1E-11 2.3E-16 131.4 43.0 349 111-482 65-456 (765)
17 PRK11447 cellulose synthase su 99.6 3.5E-12 7.5E-17 141.3 40.6 319 111-444 285-700 (1157)
18 KOG4422 Uncharacterized conser 99.6 1.1E-12 2.4E-17 119.8 30.0 320 128-461 204-569 (625)
19 PRK14574 hmsH outer membrane p 99.6 1E-11 2.2E-16 129.5 38.9 341 100-451 39-484 (822)
20 PRK11447 cellulose synthase su 99.6 2.1E-11 4.6E-16 135.1 40.7 323 110-449 366-746 (1157)
21 PRK10049 pgaA outer membrane p 99.6 1.8E-11 4E-16 129.6 37.9 374 95-482 13-422 (765)
22 KOG4626 O-linked N-acetylgluco 99.6 3.9E-12 8.5E-17 121.4 28.2 317 111-450 132-489 (966)
23 PRK10747 putative protoheme IX 99.6 2.7E-11 5.8E-16 118.5 33.3 282 144-443 97-389 (398)
24 TIGR00540 hemY_coli hemY prote 99.5 1.7E-10 3.8E-15 113.4 33.3 297 134-443 85-398 (409)
25 PF13429 TPR_15: Tetratricopep 99.5 3E-13 6.5E-18 126.2 12.4 259 169-442 14-275 (280)
26 KOG4626 O-linked N-acetylgluco 99.5 6.1E-11 1.3E-15 113.5 26.5 304 132-454 219-536 (966)
27 PF13041 PPR_2: PPR repeat fam 99.5 1.6E-13 3.5E-18 90.6 6.0 50 308-357 1-50 (50)
28 PRK09782 bacteriophage N4 rece 99.4 3.6E-09 7.7E-14 113.0 40.9 262 162-442 476-738 (987)
29 PRK14574 hmsH outer membrane p 99.4 2.4E-09 5.3E-14 111.9 37.8 337 139-491 42-454 (822)
30 PRK09782 bacteriophage N4 rece 99.4 1.1E-08 2.4E-13 109.3 42.0 316 111-445 359-707 (987)
31 PF13041 PPR_2: PPR repeat fam 99.4 9.2E-13 2E-17 86.9 6.6 50 231-280 1-50 (50)
32 COG2956 Predicted N-acetylgluc 99.4 1.3E-09 2.8E-14 96.8 28.1 294 145-447 49-350 (389)
33 COG2956 Predicted N-acetylgluc 99.4 2.3E-09 4.9E-14 95.3 29.6 290 176-482 48-347 (389)
34 PF13429 TPR_15: Tetratricopep 99.4 4.7E-12 1E-16 118.2 13.8 264 129-407 7-275 (280)
35 PRK10747 putative protoheme IX 99.4 3.4E-09 7.3E-14 103.7 34.1 291 98-408 87-389 (398)
36 KOG4318 Bicoid mRNA stability 99.4 6.9E-11 1.5E-15 117.4 20.2 256 150-430 12-286 (1088)
37 COG3071 HemY Uncharacterized e 99.4 4.6E-08 1E-12 89.7 36.1 290 144-449 97-395 (400)
38 KOG1126 DNA-binding cell divis 99.3 5.9E-10 1.3E-14 108.1 25.1 284 147-450 335-626 (638)
39 TIGR00540 hemY_coli hemY prote 99.3 2.2E-08 4.7E-13 98.6 34.3 295 97-407 86-397 (409)
40 KOG4318 Bicoid mRNA stability 99.3 3.3E-10 7.1E-15 112.7 19.4 247 117-395 12-286 (1088)
41 TIGR02521 type_IV_pilW type IV 99.3 7E-09 1.5E-13 93.7 26.6 197 163-370 31-228 (234)
42 TIGR02521 type_IV_pilW type IV 99.2 9.5E-09 2.1E-13 92.8 26.5 199 234-443 32-231 (234)
43 KOG1126 DNA-binding cell divis 99.2 4.4E-09 9.5E-14 102.2 24.5 276 111-409 335-620 (638)
44 KOG2003 TPR repeat-containing 99.2 4.4E-09 9.6E-14 97.3 23.3 312 172-500 428-742 (840)
45 KOG2076 RNA polymerase III tra 99.2 6.6E-08 1.4E-12 97.2 33.2 317 111-442 155-510 (895)
46 KOG2076 RNA polymerase III tra 99.2 2.5E-07 5.3E-12 93.2 34.7 324 115-443 191-554 (895)
47 PRK12370 invasion protein regu 99.2 2E-08 4.4E-13 102.7 27.8 265 161-445 254-536 (553)
48 KOG1155 Anaphase-promoting com 99.2 2.2E-07 4.7E-12 86.8 31.4 252 175-443 239-494 (559)
49 KOG1155 Anaphase-promoting com 99.2 7.2E-08 1.6E-12 89.9 28.1 269 158-442 257-534 (559)
50 KOG1840 Kinesin light chain [C 99.2 7.8E-09 1.7E-13 101.2 22.8 242 200-442 200-477 (508)
51 PF12569 NARP1: NMDA receptor- 99.1 2.6E-07 5.6E-12 91.7 31.9 290 137-443 10-333 (517)
52 KOG2002 TPR-containing nuclear 99.1 9.1E-08 2E-12 96.9 28.6 317 126-447 447-801 (1018)
53 COG3071 HemY Uncharacterized e 99.1 2.9E-06 6.2E-11 78.2 33.8 291 98-408 87-389 (400)
54 PRK12370 invasion protein regu 99.1 8.4E-08 1.8E-12 98.2 26.7 233 197-444 254-502 (553)
55 KOG2002 TPR-containing nuclear 99.1 8.8E-07 1.9E-11 90.0 31.7 296 150-455 439-756 (1018)
56 KOG1129 TPR repeat-containing 99.0 1E-07 2.2E-12 85.1 20.6 228 205-445 229-459 (478)
57 KOG1840 Kinesin light chain [C 99.0 1.2E-07 2.6E-12 93.0 23.1 244 164-407 200-477 (508)
58 KOG1129 TPR repeat-containing 99.0 7E-08 1.5E-12 86.0 18.8 234 166-414 226-461 (478)
59 KOG0495 HAT repeat protein [RN 99.0 7.4E-07 1.6E-11 86.7 27.0 300 125-440 473-778 (913)
60 PF12569 NARP1: NMDA receptor- 99.0 9.8E-07 2.1E-11 87.7 28.5 265 170-450 11-297 (517)
61 KOG1915 Cell cycle control pro 99.0 1.1E-05 2.4E-10 75.9 32.9 348 128-495 171-548 (677)
62 KOG2003 TPR repeat-containing 98.9 6.5E-07 1.4E-11 83.3 23.1 359 111-478 253-685 (840)
63 KOG0495 HAT repeat protein [RN 98.9 2.6E-05 5.6E-10 76.3 34.2 315 114-444 425-748 (913)
64 PF12854 PPR_1: PPR repeat 98.9 1.7E-09 3.6E-14 64.1 3.8 34 304-337 1-34 (34)
65 cd05804 StaR_like StaR_like; a 98.9 2.8E-05 6E-10 75.4 34.5 264 170-444 50-336 (355)
66 PRK11189 lipoprotein NlpI; Pro 98.9 8.6E-06 1.9E-10 76.4 29.1 94 201-303 66-160 (296)
67 PF12854 PPR_1: PPR repeat 98.9 3.8E-09 8.1E-14 62.6 4.0 32 410-441 2-33 (34)
68 PRK11189 lipoprotein NlpI; Pro 98.8 6.8E-06 1.5E-10 77.1 26.8 225 213-454 40-274 (296)
69 KOG0547 Translocase of outer m 98.8 5.1E-06 1.1E-10 78.4 25.1 343 135-485 119-535 (606)
70 KOG0547 Translocase of outer m 98.8 2.3E-05 5E-10 74.1 29.3 153 245-408 338-490 (606)
71 KOG1173 Anaphase-promoting com 98.8 2.6E-05 5.6E-10 75.1 28.9 263 162-442 243-516 (611)
72 KOG1173 Anaphase-promoting com 98.8 2.2E-05 4.9E-10 75.5 28.0 283 127-425 240-532 (611)
73 cd05804 StaR_like StaR_like; a 98.7 6.9E-05 1.5E-09 72.7 31.6 272 163-445 6-294 (355)
74 KOG1174 Anaphase-promoting com 98.7 3.4E-05 7.3E-10 71.5 26.8 270 159-445 228-501 (564)
75 PF04733 Coatomer_E: Coatomer 98.7 1.3E-06 2.8E-11 80.9 17.6 248 174-444 12-265 (290)
76 KOG1174 Anaphase-promoting com 98.6 0.00022 4.8E-09 66.2 29.9 321 95-449 195-522 (564)
77 COG3063 PilF Tfp pilus assembl 98.6 6.1E-05 1.3E-09 64.6 24.0 24 235-258 71-94 (250)
78 KOG1070 rRNA processing protei 98.6 1.4E-05 3E-10 84.3 23.8 226 231-469 1456-1690(1710)
79 KOG1915 Cell cycle control pro 98.6 0.00019 4.2E-09 67.8 27.7 267 163-444 73-351 (677)
80 KOG1914 mRNA cleavage and poly 98.6 0.0002 4.4E-09 68.8 27.8 362 96-462 19-484 (656)
81 COG3063 PilF Tfp pilus assembl 98.6 0.00016 3.5E-09 62.0 24.6 197 165-373 37-235 (250)
82 PF04733 Coatomer_E: Coatomer 98.5 5.4E-06 1.2E-10 76.7 16.8 150 209-373 112-264 (290)
83 KOG2047 mRNA splicing factor [ 98.5 0.0011 2.3E-08 65.3 31.6 330 111-447 102-509 (835)
84 PF10037 MRP-S27: Mitochondria 98.4 6.7E-07 1.5E-11 85.7 8.1 157 340-498 61-219 (429)
85 TIGR00756 PPR pentatricopeptid 98.4 4.5E-07 9.6E-12 54.5 4.5 35 311-345 1-35 (35)
86 KOG4162 Predicted calmodulin-b 98.4 0.0018 3.9E-08 65.1 31.4 314 125-445 317-784 (799)
87 KOG1128 Uncharacterized conser 98.4 0.00017 3.8E-09 71.7 23.4 214 203-444 402-616 (777)
88 KOG4340 Uncharacterized conser 98.4 8.7E-05 1.9E-09 65.9 19.2 291 132-440 11-335 (459)
89 KOG2047 mRNA splicing factor [ 98.4 0.0027 5.9E-08 62.6 30.9 297 125-446 75-418 (835)
90 KOG1128 Uncharacterized conser 98.4 0.00021 4.5E-09 71.2 23.3 214 136-374 403-616 (777)
91 KOG1070 rRNA processing protei 98.3 0.00062 1.3E-08 72.5 27.6 240 179-434 1441-1690(1710)
92 KOG1156 N-terminal acetyltrans 98.3 0.004 8.7E-08 61.5 33.3 277 162-446 142-470 (700)
93 PRK04841 transcriptional regul 98.3 0.0008 1.7E-08 74.0 30.8 293 144-443 387-719 (903)
94 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.7E-11 52.5 4.5 33 417-449 2-34 (35)
95 KOG1156 N-terminal acetyltrans 98.3 0.0043 9.3E-08 61.3 30.5 159 112-274 24-185 (700)
96 KOG0985 Vesicle coat protein c 98.3 0.0014 3E-08 67.7 27.8 119 94-225 949-1074(1666)
97 PF13812 PPR_3: Pentatricopept 98.3 1.3E-06 2.9E-11 52.0 4.2 33 311-343 2-34 (34)
98 KOG3785 Uncharacterized conser 98.3 0.0009 1.9E-08 61.1 23.6 207 237-454 289-498 (557)
99 TIGR03302 OM_YfiO outer membra 98.3 0.00015 3.3E-09 65.7 19.4 184 161-374 31-232 (235)
100 TIGR03302 OM_YfiO outer membra 98.2 0.00025 5.5E-09 64.2 20.4 193 197-409 31-232 (235)
101 KOG2376 Signal recognition par 98.2 0.0043 9.4E-08 60.6 28.8 123 97-227 13-138 (652)
102 PF13812 PPR_3: Pentatricopept 98.2 1.8E-06 3.9E-11 51.4 4.2 33 416-448 2-34 (34)
103 PLN02789 farnesyltranstransfer 98.2 0.0026 5.6E-08 59.9 27.1 209 144-357 50-267 (320)
104 COG5010 TadD Flp pilus assembl 98.2 0.00041 8.9E-09 60.9 19.9 158 167-335 70-227 (257)
105 KOG2376 Signal recognition par 98.2 0.0068 1.5E-07 59.3 32.3 296 138-440 84-516 (652)
106 PLN02789 farnesyltranstransfer 98.2 0.002 4.3E-08 60.6 26.1 143 165-319 39-185 (320)
107 PRK04841 transcriptional regul 98.2 0.0043 9.4E-08 68.3 32.1 264 172-443 383-681 (903)
108 KOG4340 Uncharacterized conser 98.2 0.00096 2.1E-08 59.5 21.2 311 111-440 26-371 (459)
109 PF01535 PPR: PPR repeat; Int 98.2 2.9E-06 6.2E-11 49.3 3.7 31 311-341 1-31 (31)
110 KOG1125 TPR repeat-containing 98.2 0.00062 1.4E-08 66.1 21.3 253 173-437 295-564 (579)
111 PRK14720 transcript cleavage f 98.1 0.0016 3.4E-08 68.6 25.1 151 234-426 117-268 (906)
112 KOG0985 Vesicle coat protein c 98.1 0.0081 1.8E-07 62.3 29.0 207 161-403 982-1189(1666)
113 COG5010 TadD Flp pilus assembl 98.1 0.00043 9.3E-09 60.7 17.4 158 135-302 70-229 (257)
114 KOG3081 Vesicle coat complex C 98.1 0.0019 4E-08 56.9 21.1 177 112-303 90-270 (299)
115 PRK10370 formate-dependent nit 98.1 0.00087 1.9E-08 58.6 19.5 158 170-348 23-181 (198)
116 PRK14720 transcript cleavage f 98.1 0.00086 1.9E-08 70.5 21.9 225 161-447 29-255 (906)
117 KOG3616 Selective LIM binding 98.1 0.00065 1.4E-08 67.6 19.7 48 135-182 561-608 (1636)
118 PRK10370 formate-dependent nit 98.0 0.00033 7.2E-09 61.2 15.9 120 323-445 52-174 (198)
119 KOG3081 Vesicle coat complex C 98.0 0.0079 1.7E-07 53.1 23.9 154 237-408 112-270 (299)
120 PF08579 RPM2: Mitochondrial r 98.0 9.9E-05 2.1E-09 55.8 10.6 73 355-427 35-116 (120)
121 KOG3617 WD40 and TPR repeat-co 98.0 0.0004 8.7E-09 69.9 17.5 239 162-442 725-994 (1416)
122 PF01535 PPR: PPR repeat; Int 98.0 6.1E-06 1.3E-10 47.9 3.2 29 417-445 2-30 (31)
123 KOG1914 mRNA cleavage and poly 98.0 0.007 1.5E-07 58.6 24.4 344 128-482 17-464 (656)
124 PRK15179 Vi polysaccharide bio 98.0 0.0058 1.3E-07 63.7 25.9 134 196-339 83-217 (694)
125 PF08579 RPM2: Mitochondrial r 98.0 0.00017 3.7E-09 54.6 10.7 81 312-392 27-116 (120)
126 PF10037 MRP-S27: Mitochondria 98.0 0.00018 3.9E-09 69.4 13.8 132 185-323 50-186 (429)
127 KOG3616 Selective LIM binding 98.0 0.0014 3.1E-08 65.3 19.9 194 170-404 739-932 (1636)
128 KOG1125 TPR repeat-containing 97.9 0.001 2.2E-08 64.8 18.4 221 209-443 295-526 (579)
129 KOG3785 Uncharacterized conser 97.9 0.016 3.5E-07 53.2 25.3 313 109-441 71-454 (557)
130 COG4783 Putative Zn-dependent 97.9 0.0064 1.4E-07 58.3 23.1 249 106-390 214-472 (484)
131 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0004 8.6E-09 66.7 15.4 122 314-442 173-295 (395)
132 PRK15359 type III secretion sy 97.9 0.00094 2E-08 55.1 15.8 100 313-416 27-126 (144)
133 KOG3617 WD40 and TPR repeat-co 97.9 0.0072 1.6E-07 61.4 24.2 262 131-437 757-1057(1416)
134 COG4783 Putative Zn-dependent 97.9 0.015 3.3E-07 55.8 24.8 217 178-427 252-474 (484)
135 PF09976 TPR_21: Tetratricopep 97.9 0.00067 1.5E-08 56.1 14.3 127 312-441 14-144 (145)
136 PF06239 ECSIT: Evolutionarily 97.8 0.0005 1.1E-08 58.9 12.8 56 265-322 44-99 (228)
137 PRK15359 type III secretion sy 97.8 0.0012 2.6E-08 54.5 15.0 103 163-269 24-126 (144)
138 PRK15179 Vi polysaccharide bio 97.8 0.0051 1.1E-07 64.0 22.2 193 148-360 73-270 (694)
139 TIGR02552 LcrH_SycD type III s 97.8 0.0011 2.3E-08 54.2 13.5 107 162-272 16-122 (135)
140 KOG3060 Uncharacterized conser 97.8 0.025 5.4E-07 49.7 21.9 188 176-374 25-220 (289)
141 KOG2053 Mitochondrial inherita 97.7 0.037 8E-07 57.0 25.8 198 174-375 54-256 (932)
142 TIGR02552 LcrH_SycD type III s 97.7 0.0027 5.8E-08 51.7 15.3 94 236-338 20-113 (135)
143 PF06239 ECSIT: Evolutionarily 97.7 0.00076 1.7E-08 57.8 11.7 105 307-430 44-153 (228)
144 KOG4162 Predicted calmodulin-b 97.7 0.022 4.9E-07 57.6 23.4 242 194-442 318-574 (799)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0013 2.9E-08 63.2 14.7 128 131-261 169-296 (395)
146 PF04840 Vps16_C: Vps16, C-ter 97.7 0.046 9.9E-07 51.4 24.5 80 316-405 183-262 (319)
147 KOG2053 Mitochondrial inherita 97.6 0.11 2.4E-06 53.7 30.5 221 108-340 22-256 (932)
148 KOG0624 dsRNA-activated protei 97.6 0.052 1.1E-06 49.8 28.0 289 140-445 47-371 (504)
149 KOG3060 Uncharacterized conser 97.6 0.044 9.6E-07 48.2 20.9 186 110-303 27-219 (289)
150 cd00189 TPR Tetratricopeptide 97.6 0.0014 3.1E-08 48.9 10.9 94 166-261 3-96 (100)
151 KOG0548 Molecular co-chaperone 97.5 0.11 2.3E-06 50.8 26.7 320 106-444 13-421 (539)
152 PF09976 TPR_21: Tetratricopep 97.5 0.01 2.2E-07 49.0 15.8 115 212-335 24-143 (145)
153 PF05843 Suf: Suppressor of fo 97.5 0.0023 4.9E-08 59.4 12.9 127 133-261 3-135 (280)
154 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0041 8.9E-08 49.2 12.8 95 348-444 5-105 (119)
155 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.007 1.5E-07 47.8 13.5 100 164-263 3-106 (119)
156 cd00189 TPR Tetratricopeptide 97.4 0.0042 9.1E-08 46.2 11.6 88 353-442 8-95 (100)
157 PF05843 Suf: Suppressor of fo 97.3 0.0053 1.1E-07 57.0 13.7 131 311-444 2-136 (280)
158 KOG0624 dsRNA-activated protei 97.3 0.13 2.9E-06 47.2 24.4 126 140-269 115-257 (504)
159 PF04840 Vps16_C: Vps16, C-ter 97.3 0.16 3.4E-06 47.9 24.4 82 349-440 181-262 (319)
160 PF12921 ATP13: Mitochondrial 97.2 0.005 1.1E-07 49.0 10.5 82 130-211 1-100 (126)
161 PRK02603 photosystem I assembl 97.2 0.023 5E-07 48.5 15.2 91 309-400 34-126 (172)
162 PF12895 Apc3: Anaphase-promot 97.2 0.0011 2.4E-08 48.9 5.9 47 324-370 3-50 (84)
163 PF12895 Apc3: Anaphase-promot 97.2 0.0011 2.4E-08 48.9 5.8 82 176-258 2-83 (84)
164 PRK02603 photosystem I assembl 97.1 0.031 6.6E-07 47.7 15.2 118 162-283 34-166 (172)
165 PRK10153 DNA-binding transcrip 97.1 0.047 1E-06 55.1 18.3 146 304-455 331-491 (517)
166 PF14938 SNAP: Soluble NSF att 97.1 0.057 1.2E-06 50.3 17.4 96 312-407 157-264 (282)
167 PF12688 TPR_5: Tetratrico pep 97.0 0.038 8.3E-07 43.6 13.5 104 317-426 8-117 (120)
168 PF14938 SNAP: Soluble NSF att 97.0 0.094 2E-06 48.8 18.1 126 314-440 118-262 (282)
169 KOG1127 TPR repeat-containing 97.0 0.19 4.1E-06 52.8 20.9 126 132-260 493-657 (1238)
170 PLN03088 SGT1, suppressor of 96.9 0.02 4.4E-07 55.1 13.6 101 171-275 10-110 (356)
171 PLN03088 SGT1, suppressor of 96.9 0.024 5.2E-07 54.6 14.1 101 318-422 10-110 (356)
172 PRK10866 outer membrane biogen 96.9 0.24 5.2E-06 44.8 19.7 56 316-371 181-238 (243)
173 CHL00033 ycf3 photosystem I as 96.9 0.035 7.6E-07 47.2 13.5 97 308-405 33-138 (168)
174 CHL00033 ycf3 photosystem I as 96.9 0.017 3.7E-07 49.1 11.5 62 200-261 36-100 (168)
175 KOG0548 Molecular co-chaperone 96.8 0.18 4E-06 49.2 18.8 167 204-373 229-420 (539)
176 KOG2041 WD40 repeat protein [G 96.8 0.25 5.4E-06 49.8 20.0 239 128-409 689-952 (1189)
177 PF14559 TPR_19: Tetratricopep 96.7 0.0052 1.1E-07 43.0 5.8 50 175-226 3-52 (68)
178 PRK10153 DNA-binding transcrip 96.7 0.17 3.6E-06 51.3 18.4 142 228-373 332-481 (517)
179 PF03704 BTAD: Bacterial trans 96.7 0.075 1.6E-06 43.9 13.6 73 382-455 64-141 (146)
180 PF13170 DUF4003: Protein of u 96.7 0.13 2.9E-06 47.8 16.3 153 326-480 78-248 (297)
181 PRK15363 pathogenicity island 96.7 0.055 1.2E-06 44.4 11.9 95 313-409 38-132 (157)
182 PRK15363 pathogenicity island 96.5 0.09 1.9E-06 43.2 12.4 95 165-262 37-132 (157)
183 COG4700 Uncharacterized protei 96.5 0.44 9.6E-06 40.0 16.1 130 308-441 87-219 (251)
184 PF14559 TPR_19: Tetratricopep 96.4 0.011 2.5E-07 41.3 6.2 25 383-407 28-52 (68)
185 PF12921 ATP13: Mitochondrial 96.4 0.041 9E-07 43.8 9.9 102 162-283 1-103 (126)
186 KOG2796 Uncharacterized conser 96.4 0.2 4.4E-06 44.4 14.6 135 310-445 177-316 (366)
187 PF12688 TPR_5: Tetratrico pep 96.4 0.2 4.3E-06 39.5 13.2 106 169-279 7-117 (120)
188 PF13432 TPR_16: Tetratricopep 96.4 0.019 4.2E-07 39.7 6.9 57 387-444 4-60 (65)
189 KOG1127 TPR repeat-containing 96.3 0.58 1.3E-05 49.3 19.5 30 309-338 595-624 (1238)
190 PRK10803 tol-pal system protei 96.3 0.083 1.8E-06 48.2 12.6 96 312-409 145-246 (263)
191 PF13432 TPR_16: Tetratricopep 96.3 0.026 5.6E-07 39.1 7.3 55 207-261 5-59 (65)
192 COG3898 Uncharacterized membra 96.3 1 2.2E-05 42.5 31.6 314 110-448 68-396 (531)
193 PRK10866 outer membrane biogen 96.3 0.82 1.8E-05 41.4 23.8 58 205-262 38-98 (243)
194 PRK10803 tol-pal system protei 96.3 0.085 1.8E-06 48.2 12.2 97 163-262 143-246 (263)
195 KOG0553 TPR repeat-containing 96.1 0.12 2.5E-06 46.9 11.7 96 320-420 91-187 (304)
196 PF13414 TPR_11: TPR repeat; P 96.1 0.032 6.9E-07 39.1 6.8 63 380-443 3-66 (69)
197 KOG1538 Uncharacterized conser 96.1 1 2.2E-05 45.2 18.8 92 344-446 746-848 (1081)
198 PF03704 BTAD: Bacterial trans 96.1 0.036 7.8E-07 45.8 8.2 70 201-270 64-138 (146)
199 PF08631 SPO22: Meiosis protei 96.0 1.3 2.8E-05 41.1 27.0 167 269-442 85-273 (278)
200 PF13170 DUF4003: Protein of u 96.0 0.4 8.6E-06 44.7 15.5 135 249-386 78-223 (297)
201 KOG3941 Intermediate in Toll s 96.0 0.065 1.4E-06 47.9 9.6 117 293-430 52-173 (406)
202 KOG3941 Intermediate in Toll s 96.0 0.06 1.3E-06 48.1 9.3 91 265-360 64-173 (406)
203 PF09205 DUF1955: Domain of un 96.0 0.6 1.3E-05 36.9 13.5 68 379-447 85-152 (161)
204 PF13281 DUF4071: Domain of un 95.9 1.4 3.1E-05 42.1 18.9 121 323-445 195-335 (374)
205 PF13414 TPR_11: TPR repeat; P 95.8 0.042 9.1E-07 38.5 6.6 59 163-224 3-63 (69)
206 PF13525 YfiO: Outer membrane 95.8 1.2 2.6E-05 39.1 19.6 58 170-227 12-70 (203)
207 PF09205 DUF1955: Domain of un 95.7 0.46 1E-05 37.5 12.0 135 111-265 18-152 (161)
208 smart00299 CLH Clathrin heavy 95.7 0.91 2E-05 37.0 15.3 114 291-427 23-137 (140)
209 PF13371 TPR_9: Tetratricopept 95.7 0.055 1.2E-06 38.3 6.8 57 388-445 3-59 (73)
210 PF04053 Coatomer_WDAD: Coatom 95.6 0.35 7.6E-06 47.8 14.2 152 144-335 274-427 (443)
211 KOG2796 Uncharacterized conser 95.6 0.5 1.1E-05 42.0 13.3 123 293-420 195-324 (366)
212 COG4235 Cytochrome c biogenesi 95.6 0.88 1.9E-05 41.5 15.3 117 229-353 152-268 (287)
213 smart00299 CLH Clathrin heavy 95.6 1 2.3E-05 36.7 15.0 128 236-392 10-137 (140)
214 COG5107 RNA14 Pre-mRNA 3'-end 95.6 0.76 1.7E-05 44.1 15.2 147 269-428 398-548 (660)
215 PF13525 YfiO: Outer membrane 95.5 1.6 3.4E-05 38.3 18.4 57 206-262 12-71 (203)
216 PF13424 TPR_12: Tetratricopep 95.5 0.047 1E-06 39.4 5.9 63 311-373 6-74 (78)
217 COG4700 Uncharacterized protei 95.4 1.4 3.1E-05 37.1 14.9 146 340-489 84-233 (251)
218 KOG0553 TPR repeat-containing 95.3 0.24 5.3E-06 44.9 10.7 102 172-277 90-191 (304)
219 COG4235 Cytochrome c biogenesi 95.2 0.41 9E-06 43.6 11.9 113 307-423 153-268 (287)
220 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.32 6.9E-06 47.1 11.8 66 307-374 72-141 (453)
221 PF13424 TPR_12: Tetratricopep 95.2 0.054 1.2E-06 39.0 5.4 61 382-442 7-73 (78)
222 PF10300 DUF3808: Protein of u 95.0 3.3 7.3E-05 41.6 19.1 182 112-302 174-374 (468)
223 COG5107 RNA14 Pre-mRNA 3'-end 94.9 3.9 8.4E-05 39.6 20.0 147 233-392 397-547 (660)
224 PF07035 Mic1: Colon cancer-as 94.8 2 4.4E-05 35.9 15.6 138 293-445 12-150 (167)
225 KOG1920 IkappaB kinase complex 94.8 4.1 9E-05 44.2 19.4 102 320-441 949-1052(1265)
226 PF13371 TPR_9: Tetratricopept 94.8 0.22 4.8E-06 35.2 7.7 55 208-262 4-58 (73)
227 KOG2280 Vacuolar assembly/sort 94.7 6.1 0.00013 40.8 22.9 300 125-441 426-770 (829)
228 PF10300 DUF3808: Protein of u 94.5 1.8 3.9E-05 43.5 15.7 164 236-407 191-374 (468)
229 COG1729 Uncharacterized protei 94.4 0.82 1.8E-05 41.1 11.5 101 312-415 144-248 (262)
230 KOG2280 Vacuolar assembly/sort 94.3 7.6 0.00016 40.1 22.8 306 110-440 452-795 (829)
231 KOG1130 Predicted G-alpha GTPa 94.2 0.71 1.5E-05 43.8 11.0 134 310-443 195-343 (639)
232 PF07035 Mic1: Colon cancer-as 94.0 3.2 6.9E-05 34.8 16.0 137 114-262 13-149 (167)
233 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 1.9 4.1E-05 42.0 13.9 65 160-227 72-140 (453)
234 COG3629 DnrI DNA-binding trans 93.9 0.49 1.1E-05 43.2 9.4 81 381-462 154-239 (280)
235 PF07079 DUF1347: Protein of u 93.9 6.6 0.00014 38.1 24.3 274 142-444 17-327 (549)
236 KOG1538 Uncharacterized conser 93.8 2.7 5.8E-05 42.4 14.8 192 125-340 629-847 (1081)
237 PF04053 Coatomer_WDAD: Coatom 93.6 4.4 9.5E-05 40.2 16.3 154 173-369 271-426 (443)
238 KOG1130 Predicted G-alpha GTPa 93.5 0.81 1.8E-05 43.4 10.1 96 346-441 196-301 (639)
239 KOG1585 Protein required for f 93.3 5.5 0.00012 35.3 15.6 205 201-438 33-250 (308)
240 PF13929 mRNA_stabil: mRNA sta 93.3 6.4 0.00014 36.0 21.4 126 313-445 134-264 (292)
241 PF13281 DUF4071: Domain of un 93.2 8.3 0.00018 37.0 20.5 71 208-278 150-227 (374)
242 COG3118 Thioredoxin domain-con 93.1 6.6 0.00014 36.0 14.9 50 309-359 235-286 (304)
243 KOG2114 Vacuolar assembly/sort 93.0 2.1 4.6E-05 44.5 13.0 177 165-371 336-516 (933)
244 KOG1920 IkappaB kinase complex 93.0 15 0.00033 40.1 19.5 112 312-443 910-1027(1265)
245 KOG2041 WD40 repeat protein [G 92.9 13 0.00027 38.3 24.0 55 135-189 764-822 (1189)
246 PRK15331 chaperone protein Sic 92.9 1.4 3E-05 36.6 9.6 88 319-408 46-133 (165)
247 PF04184 ST7: ST7 protein; In 92.8 11 0.00024 37.3 18.0 138 349-489 263-425 (539)
248 PRK15331 chaperone protein Sic 92.7 5.1 0.00011 33.3 12.6 91 351-443 43-133 (165)
249 COG3629 DnrI DNA-binding trans 92.5 1.6 3.5E-05 39.9 10.5 78 200-277 154-236 (280)
250 PF08631 SPO22: Meiosis protei 92.4 9.2 0.0002 35.4 24.4 16 390-405 256-271 (278)
251 KOG0543 FKBP-type peptidyl-pro 92.3 3.2 6.9E-05 39.6 12.4 126 171-303 216-354 (397)
252 KOG0550 Molecular chaperone (D 92.2 12 0.00025 36.1 17.6 146 291-445 185-351 (486)
253 KOG2114 Vacuolar assembly/sort 92.0 6.5 0.00014 41.1 15.0 248 130-409 333-590 (933)
254 PF13512 TPR_18: Tetratricopep 92.0 2.2 4.8E-05 34.5 9.6 74 319-392 19-94 (142)
255 COG1729 Uncharacterized protei 91.8 4.5 9.7E-05 36.5 12.2 98 346-444 143-244 (262)
256 PF10602 RPN7: 26S proteasome 91.6 2.9 6.2E-05 35.7 10.6 95 311-407 37-140 (177)
257 KOG0543 FKBP-type peptidyl-pro 91.2 1.3 2.9E-05 42.0 8.7 69 311-382 258-326 (397)
258 KOG2610 Uncharacterized conser 90.8 14 0.0003 34.5 14.5 150 246-404 116-271 (491)
259 KOG2297 Predicted translation 90.4 14 0.00031 33.9 17.8 22 414-435 320-341 (412)
260 PF13176 TPR_7: Tetratricopept 90.4 0.71 1.5E-05 27.3 4.2 26 417-442 1-26 (36)
261 KOG2610 Uncharacterized conser 90.4 5.2 0.00011 37.2 11.3 151 175-335 115-272 (491)
262 KOG4555 TPR repeat-containing 90.3 6.7 0.00015 31.1 10.3 90 319-410 52-145 (175)
263 KOG4570 Uncharacterized conser 90.2 2 4.2E-05 39.4 8.4 50 324-373 114-163 (418)
264 COG1747 Uncharacterized N-term 90.1 21 0.00046 35.4 20.1 50 395-444 184-234 (711)
265 KOG1550 Extracellular protein 89.9 26 0.00057 36.1 18.6 185 249-447 228-429 (552)
266 KOG1586 Protein required for f 89.5 15 0.00031 32.6 13.6 19 208-226 23-41 (288)
267 KOG4570 Uncharacterized conser 89.4 2.2 4.8E-05 39.1 8.1 105 303-409 57-164 (418)
268 PF13512 TPR_18: Tetratricopep 89.1 11 0.00023 30.6 11.9 79 346-427 12-94 (142)
269 PF13428 TPR_14: Tetratricopep 89.1 1.4 2.9E-05 27.5 4.9 28 165-192 3-30 (44)
270 PF13176 TPR_7: Tetratricopept 88.5 1 2.2E-05 26.6 3.9 24 313-336 2-25 (36)
271 PF10602 RPN7: 26S proteasome 88.2 5.8 0.00013 33.9 9.7 60 165-225 38-99 (177)
272 KOG4555 TPR repeat-containing 88.0 12 0.00026 29.8 11.1 51 173-225 53-103 (175)
273 PF11207 DUF2989: Protein of u 87.9 6.3 0.00014 34.0 9.5 72 292-364 123-197 (203)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 87.9 3 6.6E-05 31.0 6.5 29 161-189 40-68 (103)
275 COG0457 NrfG FOG: TPR repeat [ 87.7 18 0.00038 31.4 30.0 203 233-445 59-266 (291)
276 PF13428 TPR_14: Tetratricopep 87.6 2.1 4.6E-05 26.6 5.2 27 236-262 4-30 (44)
277 PF04184 ST7: ST7 protein; In 87.6 18 0.00038 35.9 13.3 60 385-444 264-324 (539)
278 COG4105 ComL DNA uptake lipopr 87.0 23 0.00049 31.9 23.7 71 209-280 44-118 (254)
279 KOG1585 Protein required for f 86.7 23 0.00049 31.7 16.6 206 130-368 30-250 (308)
280 PF02284 COX5A: Cytochrome c o 86.2 9.1 0.0002 28.9 8.3 30 161-190 43-72 (108)
281 COG3898 Uncharacterized membra 85.9 34 0.00073 32.9 30.3 286 103-409 92-392 (531)
282 COG2909 MalT ATP-dependent tra 85.7 54 0.0012 35.0 20.6 205 239-449 419-652 (894)
283 PF00637 Clathrin: Region in C 85.6 0.37 8E-06 39.5 1.0 54 316-369 13-66 (143)
284 PRK11906 transcriptional regul 85.5 40 0.00086 33.3 17.3 167 234-405 252-432 (458)
285 PRK09687 putative lyase; Provi 85.4 31 0.00067 32.0 28.9 237 197-459 35-276 (280)
286 PF09613 HrpB1_HrpK: Bacterial 85.4 19 0.0004 29.9 10.7 49 321-373 21-72 (160)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 84.8 7.9 0.00017 28.8 7.4 46 328-373 25-70 (103)
288 PF00637 Clathrin: Region in C 84.4 0.3 6.5E-06 40.1 -0.0 87 350-443 12-98 (143)
289 PF02284 COX5A: Cytochrome c o 83.7 6.3 0.00014 29.7 6.5 44 330-373 30-73 (108)
290 COG4649 Uncharacterized protei 83.4 26 0.00056 29.5 14.1 137 311-448 60-200 (221)
291 PF13374 TPR_10: Tetratricopep 83.2 3.3 7.2E-05 24.9 4.5 28 416-443 3-30 (42)
292 COG0457 NrfG FOG: TPR repeat [ 83.0 30 0.00064 29.9 27.8 202 199-409 59-265 (291)
293 KOG1550 Extracellular protein 82.8 63 0.0014 33.4 21.5 250 179-445 228-505 (552)
294 KOG0276 Vesicle coat complex C 82.7 16 0.00035 36.9 10.8 44 211-259 649-692 (794)
295 KOG1941 Acetylcholine receptor 82.4 46 0.001 31.6 13.2 135 238-372 127-273 (518)
296 COG3118 Thioredoxin domain-con 81.9 43 0.00092 30.9 17.7 164 148-324 120-286 (304)
297 PRK09687 putative lyase; Provi 81.7 44 0.00096 31.0 29.5 219 129-373 35-262 (280)
298 KOG1941 Acetylcholine receptor 81.6 16 0.00035 34.5 9.7 202 132-335 44-271 (518)
299 PF13374 TPR_10: Tetratricopep 81.6 3.4 7.3E-05 24.9 4.1 26 312-337 4-29 (42)
300 PF00515 TPR_1: Tetratricopept 81.3 4.9 0.00011 23.0 4.5 29 416-444 2-30 (34)
301 KOG0550 Molecular chaperone (D 80.8 57 0.0012 31.6 17.0 86 320-409 259-350 (486)
302 PF11207 DUF2989: Protein of u 80.4 18 0.00038 31.3 9.0 74 326-400 122-198 (203)
303 KOG2066 Vacuolar assembly/sort 80.0 85 0.0018 33.1 19.5 100 138-245 363-467 (846)
304 COG4105 ComL DNA uptake lipopr 79.8 46 0.001 30.0 19.9 169 266-444 33-233 (254)
305 PF02259 FAT: FAT domain; Int 79.6 59 0.0013 31.1 21.9 67 308-374 144-213 (352)
306 PRK11906 transcriptional regul 78.9 39 0.00086 33.3 11.9 159 132-300 252-432 (458)
307 PF02259 FAT: FAT domain; Int 78.3 64 0.0014 30.8 23.7 193 137-339 4-213 (352)
308 KOG2066 Vacuolar assembly/sort 78.0 98 0.0021 32.7 23.7 126 130-261 391-533 (846)
309 PF00515 TPR_1: Tetratricopept 77.7 8.2 0.00018 22.0 4.7 28 164-191 2-29 (34)
310 PHA02875 ankyrin repeat protei 76.9 80 0.0017 31.1 15.7 45 332-380 183-230 (413)
311 PF13934 ELYS: Nuclear pore co 76.8 44 0.00095 29.8 11.0 106 134-247 79-186 (226)
312 PRK15180 Vi polysaccharide bio 76.7 42 0.00091 33.1 11.2 122 321-446 300-422 (831)
313 TIGR02561 HrpB1_HrpK type III 76.7 40 0.00088 27.6 12.9 48 175-227 22-72 (153)
314 COG1747 Uncharacterized N-term 76.2 89 0.0019 31.3 21.4 164 231-409 64-234 (711)
315 PF09613 HrpB1_HrpK: Bacterial 76.1 44 0.00096 27.8 13.4 49 174-227 21-72 (160)
316 PF07719 TPR_2: Tetratricopept 75.6 10 0.00022 21.5 4.7 27 165-191 3-29 (34)
317 PF13431 TPR_17: Tetratricopep 75.6 5.1 0.00011 23.3 3.2 24 412-435 10-33 (34)
318 PF07719 TPR_2: Tetratricopept 75.6 9.1 0.0002 21.6 4.5 29 416-444 2-30 (34)
319 PF11838 ERAP1_C: ERAP1-like C 75.2 75 0.0016 30.0 16.5 85 361-448 146-235 (324)
320 COG4649 Uncharacterized protei 74.6 52 0.0011 27.8 13.8 63 163-227 59-122 (221)
321 PF07079 DUF1347: Protein of u 74.4 93 0.002 30.7 30.8 209 233-455 298-530 (549)
322 PF04097 Nic96: Nup93/Nic96; 74.2 1.2E+02 0.0026 31.9 15.3 88 317-409 265-356 (613)
323 PF13181 TPR_8: Tetratricopept 73.5 11 0.00023 21.4 4.4 27 417-443 3-29 (34)
324 COG5159 RPN6 26S proteasome re 73.4 75 0.0016 29.2 11.3 138 318-455 11-169 (421)
325 COG5187 RPN7 26S proteasome re 73.0 77 0.0017 29.2 15.3 97 309-407 114-219 (412)
326 PF07163 Pex26: Pex26 protein; 72.9 51 0.0011 30.2 10.1 87 315-403 88-181 (309)
327 COG4455 ImpE Protein of avirul 72.7 28 0.00061 30.5 8.1 56 204-259 6-61 (273)
328 KOG0276 Vesicle coat complex C 72.3 46 0.001 33.9 10.6 100 320-440 647-746 (794)
329 TIGR03504 FimV_Cterm FimV C-te 72.2 7.8 0.00017 24.2 3.6 25 421-445 5-29 (44)
330 PF06552 TOM20_plant: Plant sp 72.1 37 0.0008 28.8 8.6 77 290-376 50-138 (186)
331 COG4455 ImpE Protein of avirul 71.4 34 0.00073 30.1 8.3 77 312-389 3-81 (273)
332 COG2909 MalT ATP-dependent tra 71.3 1.5E+02 0.0033 31.9 28.8 221 210-440 426-684 (894)
333 KOG4648 Uncharacterized conser 71.1 17 0.00038 34.0 7.0 54 318-373 105-159 (536)
334 PF14689 SPOB_a: Sensor_kinase 70.9 10 0.00022 25.8 4.3 45 397-443 7-51 (62)
335 KOG2396 HAT (Half-A-TPR) repea 70.5 1.2E+02 0.0026 30.3 22.0 99 341-443 455-558 (568)
336 PF13431 TPR_17: Tetratricopep 70.4 5.3 0.00012 23.2 2.5 21 198-218 12-32 (34)
337 KOG4234 TPR repeat-containing 70.4 72 0.0016 27.7 10.8 124 355-487 105-234 (271)
338 PF13174 TPR_6: Tetratricopept 70.3 10 0.00022 21.2 3.7 25 168-192 5-29 (33)
339 KOG1586 Protein required for f 70.2 81 0.0017 28.2 14.4 27 351-377 160-186 (288)
340 PF07721 TPR_4: Tetratricopept 69.7 6.5 0.00014 21.1 2.6 19 168-186 6-24 (26)
341 KOG4648 Uncharacterized conser 69.6 12 0.00027 34.9 5.7 80 353-442 105-185 (536)
342 KOG0991 Replication factor C, 69.1 85 0.0018 28.0 11.6 37 412-449 236-272 (333)
343 PF13762 MNE1: Mitochondrial s 69.1 62 0.0014 26.4 10.6 80 313-392 42-127 (145)
344 COG3947 Response regulator con 68.6 99 0.0022 28.6 14.9 58 384-442 283-340 (361)
345 PF10579 Rapsyn_N: Rapsyn N-te 68.3 21 0.00047 25.5 5.5 46 322-367 18-65 (80)
346 COG5159 RPN6 26S proteasome re 67.6 1E+02 0.0022 28.4 11.0 127 243-372 13-152 (421)
347 PF10579 Rapsyn_N: Rapsyn N-te 67.4 20 0.00043 25.7 5.2 46 392-437 18-65 (80)
348 KOG4077 Cytochrome c oxidase, 67.4 32 0.00069 27.2 6.7 35 157-191 78-112 (149)
349 TIGR03504 FimV_Cterm FimV C-te 66.2 17 0.00037 22.7 4.2 25 239-263 5-29 (44)
350 TIGR02561 HrpB1_HrpK type III 66.1 73 0.0016 26.1 11.7 51 211-263 22-74 (153)
351 TIGR02508 type_III_yscG type I 65.4 57 0.0012 24.7 7.7 78 291-375 21-98 (115)
352 PF13181 TPR_8: Tetratricopept 64.7 17 0.00037 20.5 4.0 27 312-338 3-29 (34)
353 PF07163 Pex26: Pex26 protein; 64.5 69 0.0015 29.4 9.2 85 137-222 89-181 (309)
354 PF10366 Vps39_1: Vacuolar sor 63.9 54 0.0012 25.3 7.6 27 235-261 41-67 (108)
355 PF10366 Vps39_1: Vacuolar sor 62.8 69 0.0015 24.7 8.7 28 311-338 40-67 (108)
356 PF04097 Nic96: Nup93/Nic96; 62.5 2.1E+02 0.0045 30.1 16.9 78 291-373 274-355 (613)
357 PF11838 ERAP1_C: ERAP1-like C 62.2 1.4E+02 0.0031 28.1 22.2 147 291-442 146-302 (324)
358 PF11848 DUF3368: Domain of un 61.8 35 0.00075 21.7 5.2 34 243-276 12-45 (48)
359 PF13929 mRNA_stabil: mRNA sta 61.8 1.3E+02 0.0029 27.7 18.7 131 291-421 144-284 (292)
360 KOG2063 Vacuolar assembly/sort 61.4 2.5E+02 0.0054 30.7 18.0 117 165-281 506-639 (877)
361 PF14689 SPOB_a: Sensor_kinase 61.4 22 0.00047 24.1 4.5 25 201-225 25-49 (62)
362 PF14669 Asp_Glu_race_2: Putat 61.3 1.1E+02 0.0023 26.4 16.5 180 194-404 3-205 (233)
363 PF11848 DUF3368: Domain of un 61.0 33 0.00071 21.8 5.0 30 323-352 15-44 (48)
364 COG3947 Response regulator con 60.5 1.4E+02 0.0031 27.6 16.9 60 161-223 120-190 (361)
365 PF11846 DUF3366: Domain of un 58.3 50 0.0011 28.5 7.5 33 229-261 140-172 (193)
366 PHA02875 ankyrin repeat protei 58.0 2E+02 0.0042 28.3 16.0 107 297-416 117-231 (413)
367 PF11663 Toxin_YhaV: Toxin wit 57.9 11 0.00023 30.1 2.7 32 392-425 107-138 (140)
368 KOG4077 Cytochrome c oxidase, 57.9 78 0.0017 25.1 7.3 43 331-373 70-112 (149)
369 COG2178 Predicted RNA-binding 57.3 1.3E+02 0.0028 26.0 11.0 19 426-444 132-150 (204)
370 PF11846 DUF3366: Domain of un 56.9 48 0.001 28.6 7.1 53 175-227 120-172 (193)
371 PF10345 Cohesin_load: Cohesin 55.1 2.8E+02 0.006 29.2 27.6 170 113-283 39-238 (608)
372 KOG0686 COP9 signalosome, subu 55.0 2.1E+02 0.0046 27.9 12.7 15 395-409 319-333 (466)
373 PF13762 MNE1: Mitochondrial s 54.7 1.2E+02 0.0026 24.9 12.4 98 335-432 27-132 (145)
374 COG5108 RPO41 Mitochondrial DN 54.2 94 0.002 32.2 9.1 90 315-407 33-130 (1117)
375 COG5187 RPN7 26S proteasome re 53.6 1.9E+02 0.004 26.8 13.8 98 344-443 114-220 (412)
376 KOG2908 26S proteasome regulat 53.3 1.8E+02 0.0039 27.5 10.1 85 314-398 79-175 (380)
377 TIGR02508 type_III_yscG type I 53.0 99 0.0021 23.5 7.4 51 389-445 48-98 (115)
378 KOG2582 COP9 signalosome, subu 52.7 2.2E+02 0.0047 27.3 15.7 57 389-445 286-346 (422)
379 PF11817 Foie-gras_1: Foie gra 52.2 65 0.0014 29.2 7.4 23 168-190 183-205 (247)
380 PF10345 Cohesin_load: Cohesin 51.7 3.1E+02 0.0068 28.8 29.3 196 129-336 28-251 (608)
381 PRK10564 maltose regulon perip 51.1 31 0.00066 31.9 4.9 45 308-352 254-299 (303)
382 KOG2659 LisH motif-containing 50.8 1.8E+02 0.0039 25.8 9.7 62 129-190 24-91 (228)
383 TIGR01503 MthylAspMut_E methyl 50.8 57 0.0012 32.2 6.9 162 323-494 67-251 (480)
384 PRK10564 maltose regulon perip 50.6 33 0.00071 31.8 5.0 45 229-273 252-297 (303)
385 PRK15180 Vi polysaccharide bio 50.4 1E+02 0.0022 30.6 8.4 55 244-306 334-388 (831)
386 KOG1498 26S proteasome regulat 49.7 2.5E+02 0.0055 27.2 18.4 102 314-422 135-255 (439)
387 COG2976 Uncharacterized protei 49.7 1.7E+02 0.0038 25.3 13.2 88 169-263 95-189 (207)
388 smart00028 TPR Tetratricopepti 49.0 28 0.00062 18.3 3.2 28 417-444 3-30 (34)
389 PRK11619 lytic murein transgly 48.7 3.6E+02 0.0077 28.6 30.7 97 116-216 84-180 (644)
390 PF04762 IKI3: IKI3 family; I 48.0 4.4E+02 0.0095 29.4 18.0 30 310-339 812-843 (928)
391 KOG4567 GTPase-activating prot 47.8 1.8E+02 0.0038 27.2 9.0 44 330-373 263-306 (370)
392 KOG4279 Serine/threonine prote 47.2 3.6E+02 0.0078 28.7 11.9 185 250-445 180-396 (1226)
393 KOG2063 Vacuolar assembly/sort 46.4 4.4E+02 0.0094 29.0 21.0 119 235-358 506-639 (877)
394 PF11663 Toxin_YhaV: Toxin wit 46.3 22 0.00047 28.4 2.8 29 324-354 109-137 (140)
395 PF07575 Nucleopor_Nup85: Nup8 46.1 3.7E+02 0.0079 28.0 21.8 96 309-408 371-466 (566)
396 COG4785 NlpI Lipoprotein NlpI, 45.7 2.2E+02 0.0047 25.3 16.6 28 346-373 238-265 (297)
397 PF09868 DUF2095: Uncharacteri 45.6 81 0.0018 24.3 5.5 25 386-410 67-91 (128)
398 PHA03100 ankyrin repeat protei 45.2 3.2E+02 0.007 27.4 12.1 247 168-439 37-304 (480)
399 PF06552 TOM20_plant: Plant sp 45.1 1.8E+02 0.004 24.8 8.2 90 313-410 31-137 (186)
400 PF12926 MOZART2: Mitotic-spin 44.9 1.2E+02 0.0027 22.2 7.9 42 366-407 29-70 (88)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 44.9 1.6E+02 0.0034 23.4 7.8 42 363-404 81-123 (126)
402 COG2178 Predicted RNA-binding 44.8 2.1E+02 0.0045 24.8 8.6 98 164-261 30-149 (204)
403 PF04762 IKI3: IKI3 family; I 44.0 5E+02 0.011 29.0 14.7 109 234-370 813-926 (928)
404 PRK13342 recombination factor 43.7 3.3E+02 0.0072 26.9 19.0 47 313-359 230-279 (413)
405 PRK08691 DNA polymerase III su 43.4 3.3E+02 0.0072 29.0 11.5 47 326-374 180-227 (709)
406 KOG2908 26S proteasome regulat 42.2 3.1E+02 0.0067 26.1 12.4 79 203-281 79-169 (380)
407 KOG4521 Nuclear pore complex, 41.5 5.7E+02 0.012 28.9 13.2 156 172-333 929-1125(1480)
408 PRK09857 putative transposase; 41.5 2E+02 0.0044 26.8 9.0 24 350-373 211-234 (292)
409 PF09454 Vps23_core: Vps23 cor 41.0 48 0.001 22.8 3.5 32 344-375 7-38 (65)
410 PRK09857 putative transposase; 39.9 2.1E+02 0.0044 26.8 8.7 66 383-449 209-274 (292)
411 PF11768 DUF3312: Protein of u 39.6 3.8E+02 0.0083 27.4 10.7 93 312-407 410-505 (545)
412 PF11123 DNA_Packaging_2: DNA 39.5 1.2E+02 0.0025 21.4 5.1 32 178-211 12-43 (82)
413 PRK11639 zinc uptake transcrip 39.5 1.9E+02 0.0041 24.4 7.7 67 148-216 11-77 (169)
414 KOG2659 LisH motif-containing 39.2 2.8E+02 0.0061 24.7 9.1 97 307-405 23-128 (228)
415 COG0735 Fur Fe2+/Zn2+ uptake r 39.0 1.9E+02 0.004 23.7 7.4 60 334-394 10-69 (145)
416 PF02847 MA3: MA3 domain; Int 38.3 1.3E+02 0.0029 23.0 6.3 61 314-376 6-68 (113)
417 KOG0687 26S proteasome regulat 38.0 3.6E+02 0.0077 25.6 19.3 95 311-407 105-208 (393)
418 cd07229 Pat_TGL3_like Triacylg 37.8 1.8E+02 0.0038 28.5 8.1 132 296-432 100-254 (391)
419 smart00386 HAT HAT (Half-A-TPR 37.2 72 0.0016 17.3 3.6 28 177-206 1-28 (33)
420 COG5108 RPO41 Mitochondrial DN 37.1 2.7E+02 0.0058 29.1 9.3 77 204-280 33-115 (1117)
421 PF10963 DUF2765: Protein of u 37.0 1.3E+02 0.0028 21.9 5.3 62 125-191 10-71 (83)
422 PF09454 Vps23_core: Vps23 cor 36.9 98 0.0021 21.3 4.5 48 379-427 7-54 (65)
423 TIGR03581 EF_0839 conserved hy 35.9 1.1E+02 0.0025 26.7 5.7 82 326-407 137-235 (236)
424 COG2976 Uncharacterized protei 35.9 2.9E+02 0.0064 24.0 17.7 129 310-445 54-189 (207)
425 PF09477 Type_III_YscG: Bacter 35.6 2.1E+02 0.0045 22.1 8.2 77 291-374 22-98 (116)
426 KOG2396 HAT (Half-A-TPR) repea 35.5 4.8E+02 0.011 26.4 19.0 92 272-373 464-558 (568)
427 PRK14951 DNA polymerase III su 34.9 5.6E+02 0.012 27.0 11.7 45 327-373 186-231 (618)
428 COG2256 MGS1 ATPase related to 34.7 4.5E+02 0.0098 25.8 14.8 45 231-275 244-291 (436)
429 COG4003 Uncharacterized protei 34.6 1.5E+02 0.0032 21.4 5.1 25 386-410 37-61 (98)
430 PF09868 DUF2095: Uncharacteri 34.6 1.7E+02 0.0036 22.7 5.7 36 238-274 66-101 (128)
431 PF09670 Cas_Cas02710: CRISPR- 34.5 4.5E+02 0.0097 25.7 12.3 54 320-374 141-198 (379)
432 PHA02798 ankyrin-like protein; 34.0 3.3E+02 0.0072 27.6 10.0 120 328-450 87-214 (489)
433 KOG4567 GTPase-activating prot 33.6 2.7E+02 0.0059 26.1 8.0 59 364-427 262-320 (370)
434 PF12862 Apc5: Anaphase-promot 33.3 2E+02 0.0043 21.2 7.0 23 239-261 47-69 (94)
435 KOG3807 Predicted membrane pro 33.2 2.8E+02 0.006 26.2 8.1 104 326-440 232-336 (556)
436 cd00245 Glm_e Coenzyme B12-dep 32.9 74 0.0016 31.3 4.7 158 289-454 25-206 (428)
437 KOG2297 Predicted translation 32.7 4.2E+02 0.0092 24.9 17.5 71 322-402 267-343 (412)
438 PF11817 Foie-gras_1: Foie gra 32.5 3.8E+02 0.0082 24.2 9.7 57 204-260 183-245 (247)
439 KOG0687 26S proteasome regulat 32.2 4.5E+02 0.0097 25.0 19.3 94 201-303 106-209 (393)
440 PRK14956 DNA polymerase III su 32.1 5.5E+02 0.012 26.0 13.4 36 379-414 247-282 (484)
441 PRK07003 DNA polymerase III su 32.0 5.6E+02 0.012 27.8 11.0 46 326-373 180-226 (830)
442 PF04034 DUF367: Domain of unk 31.8 2.6E+02 0.0057 22.2 6.8 58 131-188 66-124 (127)
443 PF02607 B12-binding_2: B12 bi 31.7 94 0.002 22.0 4.2 39 245-283 13-51 (79)
444 cd08819 CARD_MDA5_2 Caspase ac 31.2 2.2E+02 0.0047 21.0 7.1 13 324-336 50-62 (88)
445 PRK07764 DNA polymerase III su 30.7 4.1E+02 0.0089 29.1 10.3 81 183-266 185-280 (824)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 30.6 2.8E+02 0.006 22.0 9.4 44 180-224 80-124 (126)
447 PF09670 Cas_Cas02710: CRISPR- 30.5 5.2E+02 0.011 25.2 13.3 53 210-262 142-198 (379)
448 COG4003 Uncharacterized protei 30.4 2.1E+02 0.0046 20.6 5.4 31 238-269 36-66 (98)
449 PF10475 DUF2450: Protein of u 30.4 4.5E+02 0.0098 24.5 12.5 25 237-261 131-155 (291)
450 PRK11639 zinc uptake transcrip 30.3 2.9E+02 0.0062 23.3 7.4 62 336-398 17-78 (169)
451 PRK14956 DNA polymerase III su 30.2 6E+02 0.013 25.8 11.3 84 184-269 187-284 (484)
452 PF12796 Ank_2: Ankyrin repeat 30.1 1.4E+02 0.0031 21.4 5.1 11 439-449 76-86 (89)
453 PF08424 NRDE-2: NRDE-2, neces 29.8 4.9E+02 0.011 24.7 14.6 158 180-341 3-185 (321)
454 KOG4507 Uncharacterized conser 29.7 2.5E+02 0.0054 28.9 7.6 27 312-338 678-704 (886)
455 TIGR01503 MthylAspMut_E methyl 29.7 3.7E+02 0.008 26.8 8.7 150 214-377 69-244 (480)
456 PRK14963 DNA polymerase III su 28.8 6.5E+02 0.014 25.8 11.0 46 292-339 178-224 (504)
457 PRK06645 DNA polymerase III su 28.8 6.5E+02 0.014 25.8 11.5 46 326-373 189-235 (507)
458 PF04034 DUF367: Domain of unk 28.3 3.1E+02 0.0067 21.9 7.7 59 199-259 66-125 (127)
459 PF08870 DUF1832: Domain of un 28.1 1.5E+02 0.0033 23.1 4.9 21 327-347 6-28 (113)
460 PF08314 Sec39: Secretory path 27.9 7.9E+02 0.017 26.5 16.6 88 197-284 430-529 (715)
461 PHA02989 ankyrin repeat protei 27.8 3.5E+02 0.0077 27.4 9.0 17 329-345 87-103 (494)
462 KOG0991 Replication factor C, 27.8 4.6E+02 0.0099 23.7 12.8 80 194-277 189-281 (333)
463 KOG0890 Protein kinase of the 27.5 1.3E+03 0.028 28.8 24.3 117 135-257 1424-1542(2382)
464 PF02847 MA3: MA3 domain; Int 27.3 2.8E+02 0.0061 21.1 7.0 60 349-410 6-67 (113)
465 cd07153 Fur_like Ferric uptake 26.9 1.5E+02 0.0032 22.9 4.8 42 319-360 9-50 (116)
466 PF07575 Nucleopor_Nup85: Nup8 26.7 1.5E+02 0.0033 30.8 6.2 61 198-259 404-464 (566)
467 PF12793 SgrR_N: Sugar transpo 26.7 3.1E+02 0.0068 21.4 7.4 61 342-404 16-94 (115)
468 cd08819 CARD_MDA5_2 Caspase ac 26.4 2.7E+02 0.0058 20.5 7.1 65 365-435 22-86 (88)
469 PRK14963 DNA polymerase III su 26.4 7.1E+02 0.015 25.5 12.6 98 326-449 177-275 (504)
470 PRK14136 recX recombination re 26.4 5.5E+02 0.012 24.1 13.2 108 94-224 159-266 (309)
471 PF04090 RNA_pol_I_TF: RNA pol 26.4 4.4E+02 0.0095 23.0 9.9 30 310-339 41-70 (199)
472 PF04910 Tcf25: Transcriptiona 26.2 6.1E+02 0.013 24.6 16.7 57 205-261 109-167 (360)
473 PF14669 Asp_Glu_race_2: Putat 26.1 4.4E+02 0.0095 22.9 14.4 68 383-453 135-216 (233)
474 PF13934 ELYS: Nuclear pore co 26.0 4.7E+02 0.01 23.3 11.2 107 312-429 78-186 (226)
475 KOG0159 Cytochrome P450 CYP11/ 25.9 7.2E+02 0.016 25.4 12.1 79 291-374 282-360 (519)
476 PF02841 GBP_C: Guanylate-bind 25.5 2.1E+02 0.0045 26.8 6.3 66 225-300 21-87 (297)
477 PRK09462 fur ferric uptake reg 25.4 3.8E+02 0.0081 21.9 7.2 60 336-396 8-68 (148)
478 COG0735 Fur Fe2+/Zn2+ uptake r 25.3 3.8E+02 0.0082 21.9 7.6 66 148-215 6-71 (145)
479 PRK14970 DNA polymerase III su 25.2 6.2E+02 0.013 24.4 10.2 84 327-413 170-267 (367)
480 PLN03025 replication factor C 25.1 5.9E+02 0.013 24.0 14.1 36 233-269 225-260 (319)
481 cd07153 Fur_like Ferric uptake 24.8 2.2E+02 0.0047 21.9 5.5 47 169-216 6-52 (116)
482 PRK07764 DNA polymerase III su 24.6 4.4E+02 0.0096 28.9 9.2 46 326-373 181-227 (824)
483 PF01475 FUR: Ferric uptake re 24.6 1.2E+02 0.0027 23.6 4.0 43 317-359 14-56 (120)
484 PRK14958 DNA polymerase III su 24.5 7.8E+02 0.017 25.2 12.3 85 293-380 182-280 (509)
485 KOG4234 TPR repeat-containing 24.4 4.9E+02 0.011 22.9 9.9 94 318-416 103-202 (271)
486 KOG1258 mRNA processing protei 24.2 8.1E+02 0.018 25.3 24.7 316 111-436 61-421 (577)
487 KOG1524 WD40 repeat-containing 24.1 2.4E+02 0.0052 28.5 6.3 24 347-370 575-598 (737)
488 PF02607 B12-binding_2: B12 bi 23.9 1.7E+02 0.0037 20.6 4.4 37 322-358 13-49 (79)
489 PF01475 FUR: Ferric uptake re 23.9 1.6E+02 0.0035 22.9 4.6 44 388-431 15-58 (120)
490 PF12926 MOZART2: Mitotic-spin 23.8 3E+02 0.0065 20.2 7.9 43 254-303 29-71 (88)
491 KOG4279 Serine/threonine prote 23.7 8.6E+02 0.019 26.1 10.3 115 148-268 180-320 (1226)
492 PRK13456 DNA protection protei 23.7 2.7E+02 0.0058 23.9 5.9 95 60-155 65-163 (186)
493 PF12968 DUF3856: Domain of Un 23.6 2.1E+02 0.0046 22.6 4.8 28 319-346 109-141 (144)
494 PRK14958 DNA polymerase III su 23.6 8.1E+02 0.018 25.1 12.0 82 184-268 185-280 (509)
495 KOG0292 Vesicle coat complex C 23.5 5.7E+02 0.012 28.0 9.2 130 173-339 653-782 (1202)
496 COG0001 HemL Glutamate-1-semia 23.4 88 0.0019 30.8 3.4 202 145-373 185-427 (432)
497 PF15297 CKAP2_C: Cytoskeleton 23.4 5.4E+02 0.012 24.7 8.3 84 382-467 105-192 (353)
498 PRK09462 fur ferric uptake reg 23.3 4.1E+02 0.0089 21.6 7.5 63 369-432 6-69 (148)
499 PRK07003 DNA polymerase III su 23.3 9.9E+02 0.022 26.1 15.4 84 181-267 182-279 (830)
500 PF03745 DUF309: Domain of unk 22.6 2.6E+02 0.0055 19.0 5.6 47 391-437 10-61 (62)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.1e-58 Score=483.79 Aligned_cols=359 Identities=17% Similarity=0.205 Sum_probs=332.7
Q ss_pred CCCHHHHHHHHccCCch--hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc---cCCCCHHHHHH
Q 042598 94 TPTPSLVQSTLNFSPEA--GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN---KEVLGPKTLAS 168 (503)
Q Consensus 94 ~p~~~~~~~~l~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~ 168 (503)
.|+..+++.++..+... .+.|.++|+.|.+ .|+.||..+|+.+|.+|++.|++++|.+++++| |..||..+|++
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 48888888888764433 7789999999998 899999999999999999999999999999887 45789999999
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc---CCCCCHHHHHHHHHHHHh
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN---EIFPDDKICDLLIKGWCV 245 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~p~~~~~~~li~~~~~ 245 (503)
+|.+|++.|++++|.++|++|.+. |+.||..+||.||.+|++.|++++|.++|++|.. ++.||..+|+++|.+|++
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999887 9999999999999999999999999999999953 688999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR 325 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 325 (503)
.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|+ +++|.++|++|.+.|+.||..+|+++|.+|++.|+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-------~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-------WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999988 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
+++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhc
Q 042598 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLK 461 (503)
Q Consensus 406 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 461 (503)
|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.2e-58 Score=481.51 Aligned_cols=356 Identities=15% Similarity=0.222 Sum_probs=335.2
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc---cCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN---KEVLGPKTLASCIDRLVRAGRPTQVLGFFE 187 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 187 (503)
...|+.+|+.|.. ||..+|+.+|.+|++.|+++.|..++.+| |..||..+|++||.+|++.|++++|.++|+
T Consensus 422 ~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~ 496 (1060)
T PLN03218 422 VKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496 (1060)
T ss_pred HHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4566666666653 89999999999999999999999998877 678999999999999999999999999999
Q ss_pred HhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCC
Q 042598 188 RMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR--GGF 264 (503)
Q Consensus 188 ~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~ 264 (503)
+|.+. |+.||..+|+.||.+|++.|++++|.++|++|.. ++.||..+|+.||.+|++.|++++|.++|++|.. .|+
T Consensus 497 eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 497 EMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 99987 9999999999999999999999999999999976 8999999999999999999999999999999986 689
Q ss_pred CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 042598 265 ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (503)
.||..+|+++|++|++.|+ +++|.++|+.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 576 ~PD~vTynaLI~ay~k~G~-------ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQ-------VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042598 345 ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424 (503)
Q Consensus 345 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 424 (503)
..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+++|++++|.++|++|.+.|+.||..+|++||.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHHH
Q 042598 425 WCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
|++.|++++|.++|++|.+.|+.||..||+.++..|.+. +..+.+..++++|.+.
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~---G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK---DDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999998888863 4455566666666543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-55 Score=460.76 Aligned_cols=361 Identities=15% Similarity=0.181 Sum_probs=282.3
Q ss_pred HHHHHHHccC--CchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc---cCCCCHHHHHHHHHH
Q 042598 98 SLVQSTLNFS--PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN---KEVLGPKTLASCIDR 172 (503)
Q Consensus 98 ~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~ 172 (503)
..++.++... ...++.|+++|++|....++.||..+|+.++.+|++.++++.+.+++..+ |..||..+||.|+.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3445544322 22367788888888764557788888888888888888876666655543 667788888888888
Q ss_pred HHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHH
Q 042598 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDE 251 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~ 251 (503)
|+++|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+ +..||..||+.++.+|++.|+.+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 8888888888888888863 6888888888888888888888888888855 777888888888888888888888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 042598 252 AKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIK 331 (503)
Q Consensus 252 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (503)
+.+++..+.+.|+.+|..+||+||++|+++|+ +++|.++|++|.. +|.++||+||.+|++.|++++|++
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-------~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD-------IEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCC-------HHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHH
Confidence 88888888888888888888888888888877 7788888888864 678888888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 042598 332 LFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGH 411 (503)
Q Consensus 332 l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (503)
+|++|.+.|+.||..||++++.+|++.|++++|.++++.|.+.|+.||..+|++||++|+++|++++|.++|++|.
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---- 387 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---- 387 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888876
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHH
Q 042598 412 NPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMAR 481 (503)
Q Consensus 412 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (503)
.||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+. +..+.+.+++++|.+
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS---GLSEQGWEIFQSMSE 454 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC---CcHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888887777764 344455556666654
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-53 Score=446.66 Aligned_cols=366 Identities=17% Similarity=0.178 Sum_probs=315.1
Q ss_pred CCCCCHHHHHHHHccCCch--hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHH
Q 042598 92 HVTPTPSLVQSTLNFSPEA--GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASC 169 (503)
Q Consensus 92 ~~~p~~~~~~~~l~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 169 (503)
.+.|+..+++.++..+... .+.|.+++..|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+||++
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~l 195 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-RNLASWGTI 195 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHH
Confidence 3568999999999765543 6789999999999 89999999999999999999999999999999986 899999999
Q ss_pred HHHHHHcCChhHHHHHHHHhHHhcCCCCC-----------------------------------HHhHHHHHHHHHhCCC
Q 042598 170 IDRLVRAGRPTQVLGFFERMERDYGFKRD-----------------------------------KDSLRLVVEKLCENGY 214 (503)
Q Consensus 170 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~-----------------------------------~~~~~~ll~~~~~~g~ 214 (503)
|.+|++.|++++|+++|++|.+. |+.|| ..+||+||++|++.|+
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 99999999999999999999765 55554 4556777888888888
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHH
Q 042598 215 ASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEA 294 (503)
Q Consensus 215 ~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a 294 (503)
+++|.++|++|.. +|..+||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|+ +++|
T Consensus 275 ~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~-------~~~a 344 (697)
T PLN03081 275 IEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL-------LEHA 344 (697)
T ss_pred HHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc-------hHHH
Confidence 8888888888875 78888999999999999999999999999888889999999999999998887 7888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 295 EKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 295 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
.+++..|.+.|+.+|..+||++|++|++.|++++|.++|++|.+ ||..||++||.+|++.|+.++|.++|++|.+.
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999998888888999999999999999999999999988853 68888999999999999999999999999888
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccc
Q 042598 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT-DGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEY 453 (503)
Q Consensus 375 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 453 (503)
|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.|+..+|+.+|.+|++.|++++|.+++++| ++.|+..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHH
Confidence 8999999999999999999999999999998874 688899889999999999999999998887765 678888888
Q ss_pred cchHHHhcCchhhhcccccccHHHHHH
Q 042598 454 RVDPRYLKKPIAVKKGKKRETLPEKMA 480 (503)
Q Consensus 454 ~~l~~~~~~~~~~~~~~~~~~l~~~~~ 480 (503)
+.++..|... +..+.++.+.+++.
T Consensus 498 ~~Ll~a~~~~---g~~~~a~~~~~~l~ 521 (697)
T PLN03081 498 AALLTACRIH---KNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHc---CCcHHHHHHHHHHh
Confidence 8888888754 33444444555543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-52 Score=442.49 Aligned_cols=368 Identities=16% Similarity=0.111 Sum_probs=319.1
Q ss_pred hcccCCCCCCHHHHHHHHccCC--chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc---cCCC
Q 042598 87 HLIFSHVTPTPSLVQSTLNFSP--EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN---KEVL 161 (503)
Q Consensus 87 ~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~ 161 (503)
.+......|+..+|+.++.... ...++|+++|+.|.. .|+.||..||+.++.+|++.|+++.+.+++..+ |..|
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 3344445678888888886543 337899999999998 899999999999999999999998777776654 7889
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-CCCCCHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLI 240 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~p~~~~~~~li 240 (503)
|..+||+||.+|+++|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.. ++.||..||+.+|
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 999999999999999999999999999974 7999999999999999999999999999966 8999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 320 (503)
.+|++.|++++|.++++.|.+.|+.++..+||+||++|++.|+ +++|.++|++|.+ +|.++||+||.+|
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-------~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-------IDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-------HHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 8999999999986 7999999999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 042598 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAM 400 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 400 (503)
+++|+.++|+++|++|.. ++.||..||+.+|.+|++.|+++.+.+++..+.+.|+.+|..++|+||++|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5999999999999999999999999999999999998888877777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHH
Q 042598 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMA 480 (503)
Q Consensus 401 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 480 (503)
++|++| .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+. +..+.+.+++++|.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---g~v~ea~~~f~~M~ 616 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS---GMVTQGLEYFHSME 616 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc---ChHHHHHHHHHHHH
Confidence 777765 4677777777777777777777777777777777777777777777666653 33444555555555
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-51 Score=437.48 Aligned_cols=368 Identities=15% Similarity=0.115 Sum_probs=335.8
Q ss_pred cccCCCCCCHHHHHHHHccCCc--hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHH---HHhccCCCC
Q 042598 88 LIFSHVTPTPSLVQSTLNFSPE--AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDF---LVDNKEVLG 162 (503)
Q Consensus 88 ~~~~~~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~ 162 (503)
+......|+..+|+.++..... ..+.|+++|+.|.. .|+.||..||+.++++|++.+++..+.++ +.+.|..+|
T Consensus 143 ~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred HHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 3334456788888888865433 37899999999998 79999999999999999999988655554 455688899
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIK 241 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~p~~~~~~~li~ 241 (503)
..+||+||.+|+++|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.. ++.||..||+.+|.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999984 7999999999999999999999999999976 89999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 321 (503)
+|++.|+++.|.+++..|.+.|+.||..+||+||++|++.|+ +++|.++|++|.. ||.++||+||.+|+
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-------~~~A~~vf~~m~~----~d~~s~n~li~~~~ 365 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS-------WGEAEKVFSRMET----KDAVSWTAMISGYE 365 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC-------HHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 8999999999975 89999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMS 401 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (503)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.||++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHH
Q 042598 402 VFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMA 480 (503)
Q Consensus 402 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 480 (503)
+|++|. .+|..+|+++|.+|++.|+.++|+++|++|.+ ++.||..||..++.+|.+.+ ..+..+++...+.
T Consensus 446 vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g---~l~~~~~i~~~~~ 516 (857)
T PLN03077 446 VFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG---ALMCGKEIHAHVL 516 (857)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc---hHHHhHHHHHHHH
Confidence 999998 57899999999999999999999999999986 69999999999999888743 3333444444433
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=9.8e-21 Score=186.10 Aligned_cols=299 Identities=14% Similarity=0.065 Sum_probs=250.5
Q ss_pred HHhcCCChHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC---HHhHHHHHHHHHhCCC
Q 042598 140 YFGRRKDFKAIHDFLVDNK-E-VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD---KDSLRLVVEKLCENGY 214 (503)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~---~~~~~~ll~~~~~~g~ 214 (503)
.+...|++++|...+.++- . +.+..++..+...|.+.|++++|..+++.+... +..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4566789999999999873 2 345678999999999999999999999999874 22111 3568889999999999
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCCCCCCCc
Q 042598 215 ASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG----TVAYNCILDCVSKLCRKKDPFRL 290 (503)
Q Consensus 215 ~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~~~~~ 290 (503)
+++|+.+|+++.+....+..+++.++..+.+.|++++|.+.++.+.+.+-.++ ...+..+...+.+.|+
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------- 195 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD------- 195 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC-------
Confidence 99999999999776556788999999999999999999999999988653332 1245567777788887
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
.++|.+.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|...|++++|.+.++.
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999988754 3356678888999999999999999999998764333356788999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCc
Q 042598 371 MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA---HNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 371 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~ 447 (503)
+.+. .|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.+++
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9885 466677788999999999999999999998875 7999999999988775 56899999999999999988
Q ss_pred cCcc
Q 042598 448 VKPK 451 (503)
Q Consensus 448 p~~~ 451 (503)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 8887
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=9.6e-19 Score=190.84 Aligned_cols=318 Identities=9% Similarity=0.025 Sum_probs=209.0
Q ss_pred chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 042598 109 EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLVRAGRPTQVLGFF 186 (503)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f 186 (503)
+..+.|..+++.+.. . .+.+..++..+...+.+.|+.+++..++.++ ..+.+...+..+...|.+.|++++|.+++
T Consensus 513 g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLT-I-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHH-h-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 346677777777765 2 2345667777777777777777777777765 22345566677777777777777777777
Q ss_pred HHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 042598 187 ERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266 (503)
Q Consensus 187 ~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 266 (503)
+.+.+ ..+.+...|..+..+|.+.|++++|...|+.+....+.+...+..+...+...|++++|..+|+++.+.. +.
T Consensus 591 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 591 NEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 77765 3345666777777777777777777777777755444456667777777777777777777777776542 33
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 042598 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346 (503)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (503)
+..++..+...+...|+ +++|.++++.+.+.+ +.+...+..+...|.+.|++++|.+.|+++...+ |+..
T Consensus 668 ~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKR-------TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 45667777777777766 667777777776654 2455566666677777777777777777766643 3445
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 347 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
++..+..++.+.|++++|.+.++.+.+.. +.+...++.+...|...|+.++|.+.|+++.+.. +.+...++.+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55666666667777777777776666632 3355666666666666677777777776666542 345556666666666
Q ss_pred hcCChHHHHHHHHHHHHC
Q 042598 427 AHNRVDKANALFDEAVRN 444 (503)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~ 444 (503)
..|+ ++|+.+++++.+.
T Consensus 816 ~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL 832 (899)
T ss_pred hcCc-HHHHHHHHHHHhh
Confidence 6666 5566666655554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=1.3e-18 Score=189.93 Aligned_cols=335 Identities=10% Similarity=-0.001 Sum_probs=259.9
Q ss_pred CchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 042598 108 PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGF 185 (503)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 185 (503)
.+..+.|...|+.+.+. .+.+...+..+...+...|++++|...++++- .+.+..++..+...+.+.|+.++|..+
T Consensus 478 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 478 KGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34467888888887752 23455667777888888888888888887762 234677888888888888999999998
Q ss_pred HHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042598 186 FERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFE 265 (503)
Q Consensus 186 f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 265 (503)
|+++.+. .+.+...+..+...|.+.|++++|..+++.+....+.+..+|..+..+|...|++++|...|+++.+.. +
T Consensus 556 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 632 (899)
T TIGR02917 556 LEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-P 632 (899)
T ss_pred HHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 8888763 234567778888888889999999999888877666778888888888888899999999988887653 3
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 042598 266 LGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345 (503)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (503)
.+...+..+..++.+.|+ .++|...|+.+.+.. +.+..+|..+...+...|++++|.++++.+.+.+ ..+.
T Consensus 633 ~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 633 DSALALLLLADAYAVMKN-------YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred CChHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 456678888888888887 788888888887654 3457788888888888999999999998887765 3466
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (503)
..+..+...+...|++++|.+.++.+.+.+ |+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 777788888888899999999998888753 455677778888888899999998888887653 55777888888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCccCcccccchHHHh
Q 042598 426 CAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYL 460 (503)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 460 (503)
...|++++|.++|+++.+... .++..+..+...+
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~ 814 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLY 814 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 888999999999988887652 3444444443333
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=9.3e-19 Score=172.07 Aligned_cols=297 Identities=11% Similarity=0.068 Sum_probs=236.7
Q ss_pred HHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCC-CC---CHHHHHHHHHHHHhc
Q 042598 171 DRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI-FP---DDKICDLLIKGWCVD 246 (503)
Q Consensus 171 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~p---~~~~~~~li~~~~~~ 246 (503)
..+...|++++|+..|+++.+. .+.+..++..+...+...|++++|..+++.+.... .+ ...++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3467889999999999999974 22355689999999999999999999999986631 11 135688899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHc
Q 042598 247 GKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN----VETFNVLISNLCK 322 (503)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~ 322 (503)
|++++|..+|+++.+.. ..+..+++.++..+.+.|+ +++|.+.++.+.+.+..++ ...|..+...+.+
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKD-------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999998753 4567889999999999998 8999999999987653322 2245677788899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSV 402 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (503)
.|++++|..+|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|++.|++++|.+.
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998753 2245677888899999999999999999998854333346788999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHHH
Q 042598 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++.........+....+..+++++.++
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9999876 577778899999999999999999999999876 488888876655544321123344444555555544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=3e-14 Score=147.52 Aligned_cols=319 Identities=11% Similarity=0.044 Sum_probs=244.0
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLGFFE 187 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~ 187 (503)
....|+.+++.... .. +-+...+..+..++...|++++|...+++.-. +.+...+..+...+...|++++|+..|+
T Consensus 57 ~~~~A~~l~~~~l~-~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 57 ETDVGLTLLSDRVL-TA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred CcchhHHHhHHHHH-hC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36678888777775 22 23344555555666779999999999988622 3467788888899999999999999999
Q ss_pred HhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 042598 188 RMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG 267 (503)
Q Consensus 188 ~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 267 (503)
+..+. -+.+...+..+...+...|++++|...++.+....+.+...+..+ ..+...|++++|...++.+.+..-.++
T Consensus 135 ~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 135 QAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 98863 233567788889999999999999999988755333344444443 347888999999999999877643344
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH----HHHHHHHHHHcCCCC
Q 042598 268 TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED----AIKLFYRMGEWGCHP 343 (503)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p 343 (503)
...+..+..++.+.|+ .++|...++...+.. +.+...+..+...|...|++++ |+..|++..+.. +.
T Consensus 212 ~~~~~~l~~~l~~~g~-------~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 212 QESAGLAVDTLCAVGK-------YQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred hhHHHHHHHHHHHCCC-------HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 4555666677888888 889999999988765 3467788888899999999986 799999888753 22
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 042598 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET-YDLLM 422 (503)
Q Consensus 344 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li 422 (503)
+...+..+...+...|++++|...++...+.. +-+...+..+...|.+.|++++|...++.+.+. .|+... +..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHH
Confidence 56788888899999999999999999988853 224556777888899999999999999998865 455433 34456
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC
Q 042598 423 TKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.++...|+.++|...|++..+..
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 77889999999999999988764
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=1.5e-14 Score=149.74 Aligned_cols=299 Identities=13% Similarity=0.052 Sum_probs=240.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhc-c-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHH
Q 042598 133 TLSFFTDYFGRRKDFKAIHDFLVDN-K-EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLC 210 (503)
Q Consensus 133 ~~~~ll~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~ 210 (503)
-...++..+.+.|++++|..++... . .+-+...+..+..++...|++++|++.|+++.+. -+.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 3456677788899999999998765 2 2345667777778888899999999999999864 2335677888889999
Q ss_pred hCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCc
Q 042598 211 ENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRL 290 (503)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~ 290 (503)
+.|++++|...+++.....+.+...+..+...+...|++++|...++.+....-. +...+..+ ..+.+.|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~------- 192 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR------- 192 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC-------
Confidence 9999999999999987655566788899999999999999999999988765322 23333333 34677777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH----HHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGE----GDE 366 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~----a~~ 366 (503)
+++|...++.+......++...+..+...+.+.|++++|+..|++..+.+ .-+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 89999999998775433445555666788999999999999999998764 2356777888899999999986 899
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 367 MIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 367 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.++.+.+.. +.+...+..+...+.+.|++++|...+++..+.. +-+...+..+..+|.+.|++++|...|+++.+.+
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999998843 2356788899999999999999999999998763 3355678888899999999999999999998864
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1e-13 Score=126.57 Aligned_cols=328 Identities=14% Similarity=0.202 Sum_probs=247.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--hcCCChH-HHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYF--GRRKDFK-AIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLG 184 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~-~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 184 (503)
..+++.-+++.|.. .|+..+...--.+++.- -...++. .-|+.|..|.. ..+..+| +.|++.+ -
T Consensus 130 EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd--L 198 (625)
T KOG4422|consen 130 EVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD--L 198 (625)
T ss_pred ccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH--H
Confidence 36788889999988 78877777665555443 3333332 22444444422 1233344 3344433 4
Q ss_pred HHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042598 185 FFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 185 ~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 263 (503)
+|+... .+..+|.+||.++|+-...+.|.+++++-.. ..+.+..+||.+|.+-.-. ...++..+|....
T Consensus 199 ~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 199 LFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK 268 (625)
T ss_pred HHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh
Confidence 555444 3678999999999999999999999999865 7889999999999876644 3388999999999
Q ss_pred CCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH-HHHHHHHHHHc---
Q 042598 264 FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED-AIKLFYRMGEW--- 339 (503)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~--- 339 (503)
+.||..|+|+++.+..+.|+.+++ ...|.+++.+|++-|+.|...+|..+|..+++.++..+ |..+..++...
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~a---r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDA---RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHH---HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 999999999999999999986644 56788999999999999999999999999999998855 45555555432
Q ss_pred -CCCC----CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 340 -GCHP----NETTFLVLIKSLYQAARVGEGDEMIDRMKSAG----YAIGK---KDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 340 -g~~p----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
.++| |..-|...|..|.+..+.+.|.++........ +.|+. .-|..+....|.....+.-..+|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333 45667888999999999999999998776531 22332 346668888899999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhc
Q 042598 408 TDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLK 461 (503)
Q Consensus 408 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 461 (503)
-.-+-|+..+...++.+....|.++-.-+++..|+..|..-+...-.-++..+.
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 777889999999999999999999999999999999885444443333333333
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.68 E-value=2.1e-12 Score=134.13 Aligned_cols=320 Identities=11% Similarity=-0.018 Sum_probs=214.3
Q ss_pred chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 042598 109 EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK-E-VLGPKTLASCIDRLVRAGRPTQVLGFF 186 (503)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~f 186 (503)
.....|+..|+...+ +.|+...|..+..+|.+.|++++|...+.+.- . +.+...|..+..+|...|++++|+.-|
T Consensus 141 ~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 336788888888765 35677888888889999999999988887652 2 335678888888999999999887765
Q ss_pred HHhHHhcCC---------------------------CCC----HHhHHHH---------------------------HHH
Q 042598 187 ERMERDYGF---------------------------KRD----KDSLRLV---------------------------VEK 208 (503)
Q Consensus 187 ~~m~~~~~~---------------------------~~~----~~~~~~l---------------------------l~~ 208 (503)
.......+. .|. ....... +..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 443221000 000 0000000 000
Q ss_pred H------HhCCChhHHHHHHHHHhc-C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 042598 209 L------CENGYASYAEKLVKDTAN-E-IFP-DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG-TVAYNCILDCV 278 (503)
Q Consensus 209 ~------~~~g~~~~a~~~~~~~~~-~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~ 278 (503)
+ ...+++++|.+.|+.... + ..| +...|+.+...+...|++++|+..|++..+. .|+ ...|..+...+
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Confidence 0 112567788888887754 2 223 3456777777777888888888888887764 344 45677777777
Q ss_pred HhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 042598 279 SKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358 (503)
Q Consensus 279 ~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 358 (503)
...|+ +++|...|+...+.. +.+...|..+...|...|++++|+..|++..+.. ..+...+..+...+.+.
T Consensus 376 ~~~g~-------~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 376 LELGD-------PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHCCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHC
Confidence 77777 778888888776643 2456677778888888888888888888877653 22456666677777888
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------H-HHHHHHHHHHHhcCC
Q 042598 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD-------S-ETYDLLMTKWCAHNR 430 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~-~~~~~li~~~~~~g~ 430 (503)
|++++|...++...+. .+-+...++.+...+...|++++|.+.|++..+. .|+ . ..++.....+...|+
T Consensus 447 g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 447 GSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhh
Confidence 8888888888887763 2334567777788888888888888888877654 221 1 112222333444688
Q ss_pred hHHHHHHHHHHHHCC
Q 042598 431 VDKANALFDEAVRNG 445 (503)
Q Consensus 431 ~~~A~~~~~~m~~~g 445 (503)
+++|.+++++..+..
T Consensus 524 ~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 524 FIEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888877654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=5.2e-12 Score=131.17 Aligned_cols=298 Identities=13% Similarity=0.017 Sum_probs=232.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhc-cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCC-CHHhHHHHHHHHHh
Q 042598 134 LSFFTDYFGRRKDFKAIHDFLVDN-KEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKR-DKDSLRLVVEKLCE 211 (503)
Q Consensus 134 ~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~~~~~~ll~~~~~ 211 (503)
+...-..+.+.|++++|...+.+. ...|+...|..+..+|.+.|++++|++.++...+. .| +...|..+-.+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 445566778899999999999875 45678889999999999999999999999998863 44 56788889999999
Q ss_pred CCChhHHHHHHHHHhc--C---------------------------CCC----CHHHHHHH-------------------
Q 042598 212 NGYASYAEKLVKDTAN--E---------------------------IFP----DDKICDLL------------------- 239 (503)
Q Consensus 212 ~g~~~~a~~~~~~~~~--~---------------------------~~p----~~~~~~~l------------------- 239 (503)
.|++++|+.-|..... + ..| ........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999875543211 0 000 00000000
Q ss_pred --------HHHH------HhcCCHHHHHHHHHHHHHCC-CCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 240 --------IKGW------CVDGKLDEAKRLAREMYRGG-FEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 240 --------i~~~------~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
+..+ ...+++++|.+.|++..+.+ ..| +...++.+...+...|+ +++|...|+...+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~-------~~eA~~~~~kal~ 359 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK-------HLEALADLSKSIE 359 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH
Confidence 0000 12357889999999998765 233 35577888888888888 8999999999876
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHH
Q 042598 304 NGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383 (503)
Q Consensus 304 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 383 (503)
.. +.+...|..+...+...|++++|+..|++..+.. .-+..+|..+...+...|++++|...|++.++.. +.+...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 53 2345688888899999999999999999987763 2356888889999999999999999999998853 2356777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
..+...+.+.|++++|+..|++..+. .+-+...|+.+...+...|++++|.+.|++..+..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 88888999999999999999998865 24457889999999999999999999999988765
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=1.1e-11 Score=131.39 Aligned_cols=349 Identities=10% Similarity=-0.026 Sum_probs=206.3
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFER 188 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 188 (503)
...|..+++...+. -+.+...+..+..++...|+.++|...+++.- .+.+.. +..+...+...|+.++|+..+++
T Consensus 65 ~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 65 WQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555554431 12233444455555555566665555555441 122334 55555555556666666666655
Q ss_pred hHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh-----cCCH---HHHHH
Q 042598 189 MERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDD------KICDLLIKGWCV-----DGKL---DEAKR 254 (503)
Q Consensus 189 m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~------~~~~~li~~~~~-----~g~~---~~a~~ 254 (503)
+.+. .+.+...+..+..++...|..+.|++.++.... .|+. .....++..... .+++ ++|++
T Consensus 142 al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 142 ALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 5542 112333344445555555555555555554332 1221 011111111111 1122 55666
Q ss_pred HHHHHHHC-CCCcCHH-HHH----HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC-CC-hhhHHHHHHHHHccCCH
Q 042598 255 LAREMYRG-GFELGTV-AYN----CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP-RN-VETFNVLISNLCKIRRS 326 (503)
Q Consensus 255 ~~~~m~~~-g~~~~~~-~~~----~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~ 326 (503)
.++.+.+. .-.|+.. .+. ..+.++...|+ .++|+..|+.+.+.+.+ |+ ...+ +...|...|++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~-------~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~ 288 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDR-------YKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQP 288 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCc
Confidence 66666643 1223221 111 11233445566 78999999999887532 32 2223 46789999999
Q ss_pred HHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHH
Q 042598 327 EDAIKLFYRMGEWGCHP---NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY-----------AIG---KKDYYEFLTR 389 (503)
Q Consensus 327 ~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~~~---~~~~~~li~~ 389 (503)
++|+.+|+++.+..... .......+..++...|++++|.++++.+.+..- .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 99999999987643111 134566677788999999999999999987421 123 2345667788
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccc--hHHHhcCchhhh
Q 042598 390 LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV--DPRYLKKPIAVK 467 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~~~~~ 467 (503)
+...|+.++|+++++++... .+-+...+..+...+...|++++|++.+++..+.. |+...+.. ...+... +
T Consensus 369 l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~----~ 441 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDL----Q 441 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHh----C
Confidence 88999999999999999865 35577889999999999999999999999998865 66544433 2333333 3
Q ss_pred cccccccHHHHHHHH
Q 042598 468 KGKKRETLPEKMARK 482 (503)
Q Consensus 468 ~~~~~~~l~~~~~~~ 482 (503)
..+.++.++++....
T Consensus 442 ~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 442 EWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHHh
Confidence 455555555555543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.64 E-value=3.5e-12 Score=141.32 Aligned_cols=319 Identities=11% Similarity=0.034 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc-CCCC---HHHHH------------HHHHHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK-EVLG---PKTLA------------SCIDRLV 174 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~---~~~~~------------~li~~~~ 174 (503)
.+.|+..|+...+. .+.+...+..+..++.+.|++++|...+++.- ..|+ ...|. .....+.
T Consensus 285 ~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 285 GGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 55667777666651 12356667777777777777777777776542 1221 11121 1133455
Q ss_pred HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH--------------
Q 042598 175 RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI-------------- 240 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li-------------- 240 (503)
+.|++++|++.|++..+. .+.+...+..+...+...|++++|++.|++..+..+.+...+..+.
T Consensus 363 ~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 677777777777777653 1234555666677777777777777777766442222233322222
Q ss_pred ----------------------------HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHH
Q 042598 241 ----------------------------KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDS 292 (503)
Q Consensus 241 ----------------------------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~ 292 (503)
..+...|++++|++.|++..+.. +-+...+..+...|.+.|+ .+
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~-------~~ 512 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ-------RS 512 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-------HH
Confidence 22334566666666666665532 1134445555566666665 56
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--------------------------------
Q 042598 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG-------------------------------- 340 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------------------- 340 (503)
+|...+++..+... .+...+..+...+...|+.++|+..++.+....
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 66666666554321 122222222222333344444433333221100
Q ss_pred -------CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 042598 341 -------CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNP 413 (503)
Q Consensus 341 -------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 413 (503)
...+...+..+...+.+.|++++|.+.|+.+.+.. +.+...+..+...|...|+.++|.+.++...+.. +.
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~ 669 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-ND 669 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CC
Confidence 11222334444555555666666666666655532 2234555556666666666666666666555331 12
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 414 DSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
+...+..+..++...|++++|.++++++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 3344445555556666666666666665543
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.1e-12 Score=119.85 Aligned_cols=320 Identities=12% Similarity=0.108 Sum_probs=230.8
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHhccC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHH
Q 042598 128 SHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE---VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRL 204 (503)
Q Consensus 128 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ 204 (503)
+-+..+|..+|..+|+....+.|.+++++.+. +.+..+||.+|.+-.-.. -.++..+|... .+.||..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-km~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-KMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh-hcCCchHhHHH
Confidence 45778999999999999999999999988743 568889999987654322 26788899887 89999999999
Q ss_pred HHHHHHhCCChhHH----HHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCc----CHHH
Q 042598 205 VVEKLCENGYASYA----EKLVKDTAN-EIFPDDKICDLLIKGWCVDGKLDE-AKRLAREMYR----GGFEL----GTVA 270 (503)
Q Consensus 205 ll~~~~~~g~~~~a----~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~~----~~~~ 270 (503)
++++..+.|+++.| .+++.+|+. |+.|...+|..+|..+++.++..+ +..++.++.. ..++| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999988765 566777877 999999999999999999888644 5555555443 22332 4566
Q ss_pred HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----CCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 042598 271 YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----GVPRN---VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343 (503)
Q Consensus 271 ~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (503)
|...++.|.+..+ .+-|.++..-+... -+.++ ..-|..+....|+....+..+..|+.|.-.-+-|
T Consensus 359 F~~AM~Ic~~l~d-------~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 359 FQSAMSICSSLRD-------LELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred HHHHHHHHHHhhh-------HHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 7888888887766 55666665544321 12233 2345667788899999999999999999888889
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--------------------CHHHHHH-H
Q 042598 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE--------------------RIEQAMS-V 402 (503)
Q Consensus 344 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--------------------~~~~A~~-~ 402 (503)
+..+...++++....|.++-.-++|..++..|...+...-.-++..+|+.. ++.++.+ -
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998886555555555555555533 1111111 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-ccCcccccchHHHhc
Q 042598 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV-EVKPKEYRVDPRYLK 461 (503)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~ 461 (503)
-..|.+. .......+.....+.+.|..++|.+++..+.+.+- -|.....+.+.....
T Consensus 512 ~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 512 PIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 1233333 34455667777788899999999999999866643 233344444444433
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=1e-11 Score=129.51 Aligned_cols=341 Identities=11% Similarity=0.014 Sum_probs=188.8
Q ss_pred HHHHHccCCchhHHHHHHHHHHhhCCCCCCCH--HHHHHHHHHHhcCCChHHHHHHHHhccCCCC--HHHHHHHHHHHHH
Q 042598 100 VQSTLNFSPEAGRAILGFNHWLTQNANFSHTD--ETLSFFTDYFGRRKDFKAIHDFLVDNKEVLG--PKTLASCIDRLVR 175 (503)
Q Consensus 100 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~li~~~~~ 175 (503)
...++....+....|+..|+...+. .|+. ..+ .++..++..|+.++|...+++...+-+ ......+...|..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 3333333333344556655555541 1221 122 555555555666666666665542112 2222222445555
Q ss_pred cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042598 176 AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRL 255 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 255 (503)
.|++++|+++|+++.+. .+-+...+..++..+.+.++.++|++.++++.... |+...+-.++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-cchHHHHHHHHHHHhcchHHHHHHH
Confidence 56666666666666553 12233444455555666666666666666554421 3333343333333333444446666
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCC------------------------------------------------
Q 042598 256 AREMYRGGFELGTVAYNCILDCVSKLCRKKDP------------------------------------------------ 287 (503)
Q Consensus 256 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~------------------------------------------------ 287 (503)
++++.+.. +-+...+..++.+..+.|-...+
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 66665542 11222222222222222211100
Q ss_pred ----------------------------------CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 042598 288 ----------------------------------FRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLF 333 (503)
Q Consensus 288 ----------------------------------~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (503)
.+...++.+.|+.+...|.+....+-.++.++|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0114566666666666665545556667778888888888888888
Q ss_pred HHHHHcC-----CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHHHccC
Q 042598 334 YRMGEWG-----CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY-----------AIG--K-KDYYEFLTRLCGIE 394 (503)
Q Consensus 334 ~~m~~~g-----~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~~~--~-~~~~~li~~~~~~g 394 (503)
+++.... ..++......|..++...+++++|..+++.+.+.-. .|| - ..+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 8875532 122334456778888888888888888888876211 122 1 23444566677788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcc
Q 042598 395 RIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPK 451 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 451 (503)
++.+|++.++++.... +-|......+...+...|.+.+|++.++..... .|+..
T Consensus 431 dl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 431 DLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccH
Confidence 8888888888887552 567778888888888888888888888666554 35443
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.59 E-value=2.1e-11 Score=135.13 Aligned_cols=323 Identities=12% Similarity=0.056 Sum_probs=202.9
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK-E-VLGPKTLASCIDRLVRAGRPTQVLGFFE 187 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~f~ 187 (503)
..+.|...|+.+.+. .+.+...+..+..++...|++++|.+.+++.- . +.+...+..+...|. .++.++|+.+++
T Consensus 366 ~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 366 NLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 366788888888762 23456677778888899999999999888752 2 234445554444442 234444544444
Q ss_pred HhHHhcC-------CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042598 188 RMERDYG-------FKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMY 260 (503)
Q Consensus 188 ~m~~~~~-------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 260 (503)
.+..... .......+..+...+...|++++|++.|++.....+-+...+..+...|.+.|++++|...++++.
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3322100 000011223333444445555555555554433222233444444445555555555555555444
Q ss_pred HC----------------------------------CCCcCHH---------HHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 042598 261 RG----------------------------------GFELGTV---------AYNCILDCVSKLCRKKDPFRLDSEAEKV 297 (503)
Q Consensus 261 ~~----------------------------------g~~~~~~---------~~~~li~~~~~~g~~~~~~~~~~~a~~~ 297 (503)
+. ...++.. .+..+.+.+...|+ .++|.++
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~-------~~eA~~~ 595 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK-------EAEAEAL 595 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC-------HHHHHHH
Confidence 32 1111110 11123344555555 6778877
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCC
Q 042598 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA 377 (503)
Q Consensus 298 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (503)
++. .+.+...+..+...|.+.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.++.+.+.. .
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 762 24566677888999999999999999999998863 2357888899999999999999999999887632 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCccC
Q 042598 378 IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGH--NP---DSETYDLLMTKWCAHNRVDKANALFDEAVR-NGVEVK 449 (503)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~ 449 (503)
.+......+...+...|+.++|.++++++....- .| +...+..+...+...|+.++|+..|++... .|+.|+
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 3455667778888999999999999999886421 12 234666677889999999999999998864 355443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.58 E-value=1.8e-11 Score=129.63 Aligned_cols=374 Identities=10% Similarity=0.017 Sum_probs=252.8
Q ss_pred CCHHHHHHHHc--cCCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc-c-CCCCHHHHHHHH
Q 042598 95 PTPSLVQSTLN--FSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN-K-EVLGPKTLASCI 170 (503)
Q Consensus 95 p~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li 170 (503)
.++..+...+. .-.+....|++++..... .-..+...+..+..++.+.|++++|..++++. . .+.+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34555544442 233446788888888764 12455667899999999999999999999885 2 244677888999
Q ss_pred HHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 042598 171 DRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLD 250 (503)
Q Consensus 171 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 250 (503)
..+...|++++|+..+++..+. .+.+.. +..+..++...|+.++|+..+++.....+.+...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999874 233455 8888889999999999999999997766566777777888888899999
Q ss_pred HHHHHHHHHHHCCCCcCH------HHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHhC-CCCCChh-hH----HHHH
Q 042598 251 EAKRLAREMYRGGFELGT------VAYNCILDCVSKLCRKKD-PFRLDSEAEKVLLDMEYN-GVPRNVE-TF----NVLI 317 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~-~~~~~~~a~~~~~~m~~~-g~~~~~~-~~----~~li 317 (503)
+|++.++.... .|+. .....++......+.... .....++|.+.++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99998886653 3331 112222222221111000 000126788888888753 1123221 11 1113
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcc
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCH-PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI---GKKDYYEFLTRLCGI 393 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~ 393 (503)
.++...|++++|+..|+++.+.+.. |+. .-..+...|...|++++|...|+.+.+..-.. .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 4556779999999999999887532 432 22225678999999999999999988743111 134566677788999
Q ss_pred CCHHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCccccc-chHH
Q 042598 394 ERIEQAMSVFEKMKTDG-----------HNPD---SETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYR-VDPR 458 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~ 458 (503)
|++++|.++++.+.+.. -.|+ ...+..+...+...|+.++|+++++++.... |+..... .+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 99999999999998651 1123 2345667788999999999999999998764 4443222 2222
Q ss_pred HhcCchhhhcccccccHHHHHHHH
Q 042598 459 YLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
.+. ..+..+.++..+++....
T Consensus 402 l~~---~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 402 VLQ---ARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHH---hcCCHHHHHHHHHHHHhh
Confidence 222 233445566666655554
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=3.9e-12 Score=121.43 Aligned_cols=317 Identities=11% Similarity=0.010 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc-cCCCCHH-------------------------
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN-KEVLGPK------------------------- 164 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~------------------------- 164 (503)
...|+.+++.+.+ .. +-....|..+..++.+.|+.+.|.+.+.+. ...|+..
T Consensus 132 ~~~al~~y~~aie-l~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 132 LQDALALYRAAIE-LK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHHHh-cC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 4566666666654 11 123456666666777777776666655432 2222211
Q ss_pred ----------HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCH
Q 042598 165 ----------TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDD 233 (503)
Q Consensus 165 ----------~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~ 233 (503)
.|+.|-..+-..|+...|++-|++..+ +.|+ ...|-.|-..|...+.+++|+..|.+...--+-..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 123333333344555555555555442 2333 24455555556666666666666655544333345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhh
Q 042598 234 KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVET 312 (503)
Q Consensus 234 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 312 (503)
..+..+...|-..|++|.|+..|++..+. .|+ ...|+.|.+++-..|+ +.+|++.+........ --...
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~-------V~ea~~cYnkaL~l~p-~hada 356 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGS-------VTEAVDCYNKALRLCP-NHADA 356 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccc-------hHHHHHHHHHHHHhCC-ccHHH
Confidence 56666666666778888888888877763 555 5688888888888887 7888888887765431 23457
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK-KDYYEFLTRL 390 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~ 390 (503)
.+.+..+|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...|++.++ +.|+- ..|+.+-..|
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH
Confidence 78888999999999999999988776 3444 36678888889999999999999999887 66764 6788888899
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc
Q 042598 391 CGIERIEQAMSVFEKMKTDGHNPDS-ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (503)
-..|+++.|.+.+...... .|.. ..++.|...|-..|++.+|+.-|++.++.. ||.
T Consensus 433 ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk--PDf 489 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK--PDF 489 (966)
T ss_pred HHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC--CCC
Confidence 9999999999999888764 5544 578899999999999999999999988754 553
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=2.7e-11 Score=118.45 Aligned_cols=282 Identities=10% Similarity=0.054 Sum_probs=216.3
Q ss_pred CCChHHHHHHHHhccCCC-CHHHHHHH-HHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHH--HHHHHHHhCCChhHHH
Q 042598 144 RKDFKAIHDFLVDNKEVL-GPKTLASC-IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLR--LVVEKLCENGYASYAE 219 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~-~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~ 219 (503)
.|++++|.+.+.+..... ++..+-.+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999999988764432 33333333 33447899999999999999864 56654443 3356888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-------HHHHHHHHHHhcCCCCCCCCcHH
Q 042598 220 KLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTV-------AYNCILDCVSKLCRKKDPFRLDS 292 (503)
Q Consensus 220 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-------~~~~li~~~~~~g~~~~~~~~~~ 292 (503)
..++++.+..+-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+ .+
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~-------~~ 246 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG-------SE 246 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC-------HH
Confidence 99999988766778899999999999999999999999999987553321 22233332222221 34
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...
T Consensus 247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHH
Confidence 555566555332 2357778889999999999999999999998874 445422 23444456699999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 373 SAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 373 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
+. .+-|.....++-..+.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 322 k~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 74 3446677889999999999999999999999975 79999999999999999999999999998754
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.7e-10 Score=113.38 Aligned_cols=297 Identities=10% Similarity=0.034 Sum_probs=210.9
Q ss_pred HHHHHHHH--hcCCChHHHHHHHHhccC-CCCHHH-HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHH--hHHHHHH
Q 042598 134 LSFFTDYF--GRRKDFKAIHDFLVDNKE-VLGPKT-LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD--SLRLVVE 207 (503)
Q Consensus 134 ~~~ll~~~--~~~~~~~~a~~~~~~~~~-~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~--~~~~ll~ 207 (503)
...+..+. ...|+++.|.+.+.+... .|++.. +-.....+.+.|+.+.|.+.|++..+. .|+.. .--....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHH
Confidence 33444433 457999999999987643 344333 334456677889999999999998764 35543 3333577
Q ss_pred HHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH---HhcCCC
Q 042598 208 KLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCV---SKLCRK 284 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~ 284 (503)
.+...|+++.|...++.+.+.-+-+...+..+...+...|++++|.+++..+.+.+...+......-..++ ...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~- 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM- 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 88899999999999999988666677889999999999999999999999999987543332212222222 22122
Q ss_pred CCCCCcHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHh
Q 042598 285 KDPFRLDSEAEKVLLDMEYNGV---PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT---FLVLIKSLYQA 358 (503)
Q Consensus 285 ~~~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~li~~~~~~ 358 (503)
.++..+.+..+..... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........
T Consensus 241 ------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 241 ------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred ------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCC
Confidence 1112223333333211 1378889999999999999999999999998863 44332 11122222345
Q ss_pred CCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042598 359 ARVGEGDEMIDRMKSAGYAIGK--KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
++.+.+.+.++...+.. +-|. ....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77888888888877742 2233 56668888999999999999999953333347999999999999999999999999
Q ss_pred HHHHHHH
Q 042598 437 LFDEAVR 443 (503)
Q Consensus 437 ~~~~m~~ 443 (503)
++++-..
T Consensus 392 ~~~~~l~ 398 (409)
T TIGR00540 392 MRQDSLG 398 (409)
T ss_pred HHHHHHH
Confidence 9998644
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=3e-13 Score=126.23 Aligned_cols=259 Identities=18% Similarity=0.134 Sum_probs=85.6
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKR-DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG 247 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 247 (503)
+-..+.+.|++++|+++++..... ...| |..-|..+.......++.+.|++.++++...-.-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 345555666666666666443321 1112 333344444445556666666666666644222244445555555 5666
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCCH
Q 042598 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN-GVPRNVETFNVLISNLCKIRRS 326 (503)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~ 326 (503)
++++|.+++.+..+. .++...+..++..+.+.++ .+++.++++..... ..+.+...|..+...+.+.|+.
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGD-------YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp ----------------------------H-HHHTT--------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhH-------HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 677776666655443 2344555566666666665 66666666665532 2234566666777777777777
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 327 EDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 327 ~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
++|++.|++..+. .| |......++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 7777777777664 34 35566667777777777777777776666642 34445566677777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 406 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
..+.. +.|..+...+..++...|+.++|.++.++..
T Consensus 240 ~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 240 ALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccccc-ccccccccccccccccccccccccccccccc
Confidence 66531 3466666677777777777777777766544
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.47 E-value=6.1e-11 Score=113.46 Aligned_cols=304 Identities=12% Similarity=-0.003 Sum_probs=231.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhc-cCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHH
Q 042598 132 ETLSFFTDYFGRRKDFKAIHDFLVDN-KEVLG-PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEK 208 (503)
Q Consensus 132 ~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~ 208 (503)
..|+.+-..+...|+...+...+++. ...|+ ...|-.|-..|-..+.+++|+..|...... .|+ .+.+..+...
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---rpn~A~a~gNla~i 295 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL---RPNHAVAHGNLACI 295 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc---CCcchhhccceEEE
Confidence 45666666677788888888777765 34443 568889999999999999999999887743 554 5778888888
Q ss_pred HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCC
Q 042598 209 LCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288 (503)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 288 (503)
|-+.|++|.|+..|++..+.-+--...|+.|..++-..|++.+|.+.|.+..... .--....+.|-+.|...|.
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~----- 369 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGK----- 369 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcc-----
Confidence 9999999999999999866444446789999999999999999999999988753 2235678899999999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhHHHH
Q 042598 289 RLDSEAEKVLLDMEYNGVPRN-VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE-TTFLVLIKSLYQAARVGEGDE 366 (503)
Q Consensus 289 ~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~ 366 (503)
+++|..+|....+- .|. ...+|.+...|-+.|++++|+..|++... +.|+- ..|+.+-..|-..|+++.|.+
T Consensus 370 --~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 370 --IEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred --chHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 55666666554432 122 34788999999999999999999999877 67774 789999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc---CC----hHHHHHH
Q 042598 367 MIDRMKSAGYAIG-KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS-ETYDLLMTKWCAH---NR----VDKANAL 437 (503)
Q Consensus 367 ~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~---g~----~~~A~~~ 437 (503)
.+...+. +.|. ...++.|...|-..|++.+|+.-+++..+. +||. ..|..++.++--- -+ +++..++
T Consensus 444 ~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 444 CYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred HHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999887 4454 467888999999999999999999998864 6765 3455555443221 12 2344444
Q ss_pred HHHHHHCCCccCccccc
Q 042598 438 FDEAVRNGVEVKPKEYR 454 (503)
Q Consensus 438 ~~~m~~~g~~p~~~~~~ 454 (503)
.++-.+...-|+..-+.
T Consensus 520 vrdql~~~rlpsvhP~h 536 (966)
T KOG4626|consen 520 VRDQLEKNRLPSVHPHH 536 (966)
T ss_pred HHHHHhhhcCCccCccc
Confidence 44444444445554433
No 27
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.6e-13 Score=90.61 Aligned_cols=50 Identities=40% Similarity=0.670 Sum_probs=44.1
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 357 (503)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999988999999999999988864
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=3.6e-09 Score=113.01 Aligned_cols=262 Identities=9% Similarity=-0.069 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...|..+..++.. ++.++|+..|.+.... .|+......+...+.+.|++++|...|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHH
Confidence 44555555555554 5666666655555543 354433333333344666666666666665332 233334445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 321 (503)
.+.+.|++++|.+.+++..+.+ ..+...+..+.....+.|+ .++|...+++..+.. |+...|..+...+.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr-------~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~ 620 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ-------PELALNDLTRSLNIA--PSANAYVARATIYR 620 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 6666666666666666666543 1122222222223333355 566666666665443 44556666666666
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMS 401 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (503)
+.|++++|+..|++..+.. +-+...++.+..++...|+.++|.+.++...+.. +-+...+..+..++...|++++|+.
T Consensus 621 ~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666666666665542 1133455555556666666666666666666532 2244556666666666666666666
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 402 VFEKMKTDGHNPDS-ETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 402 ~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
.|++..+. .|+. .+.........+..+++.|.+-++.-.
T Consensus 699 ~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 699 YARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 66666643 3433 333333344444445555555444443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.43 E-value=2.4e-09 Score=111.95 Aligned_cols=337 Identities=14% Similarity=0.097 Sum_probs=222.2
Q ss_pred HHHhcCCChHHHHHHHHhcc-CCCCH--HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh
Q 042598 139 DYFGRRKDFKAIHDFLVDNK-EVLGP--KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215 (503)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~ 215 (503)
-...+.|+++.|.+.|.+.- ..|+. .++ .++..+...|+.++|+..+++... ...........+...|...|++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCH
Confidence 34568899999999998873 34443 344 888889999999999999999873 1222333334445688899999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHH
Q 042598 216 SYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAE 295 (503)
Q Consensus 216 ~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~ 295 (503)
++|+++|+++.+..+-+...+..++..+...++.++|++.++++... .|+...+..+ +|...+... ..+|.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l--ayL~~~~~~-----~~~AL 189 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL--SYLNRATDR-----NYDAL 189 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH--HHHHHhcch-----HHHHH
Confidence 99999999998766666777888899999999999999999999875 5665556333 444433211 44588
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH-------------------------------------------
Q 042598 296 KVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL------------------------------------------- 332 (503)
Q Consensus 296 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l------------------------------------------- 332 (503)
+.++++.+.. +-+...+..++.+..+.|-...|+++
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 8888887764 22444445555555555443333332
Q ss_pred -----HHHHHHc-CCCCCH-H----HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 042598 333 -----FYRMGEW-GCHPNE-T----TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMS 401 (503)
Q Consensus 333 -----~~~m~~~-g~~p~~-~----t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (503)
++.+... +-.|.. . ...-.+-++...+++.++.+.|+.+...|.+....+-..+.++|...++.++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 2332221 112321 1 1122345667788888888888888888776666677888888888889999999
Q ss_pred HHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------ccCc--ccccch-HHHhcC
Q 042598 402 VFEKMKTDG-----HNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV-----------EVKP--KEYRVD-PRYLKK 462 (503)
Q Consensus 402 ~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~~~~~l-~~~~~~ 462 (503)
+++++.... ..++......|.-+|...+++++|..+++++.+.-. .|++ ..+..+ ..++.
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~- 427 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV- 427 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH-
Confidence 988886432 122444457788888888999999999888887311 1121 111111 12112
Q ss_pred chhhhcccccccHHHHHHHHHHhhhhhhh
Q 042598 463 PIAVKKGKKRETLPEKMARKRRRLKQIRL 491 (503)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~l~ki~~ 491 (503)
+.+....+++.++++....++-..++.
T Consensus 428 --~~gdl~~Ae~~le~l~~~aP~n~~l~~ 454 (822)
T PRK14574 428 --ALNDLPTAQKKLEDLSSTAPANQNLRI 454 (822)
T ss_pred --HcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345566677777777766655555443
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.41 E-value=1.1e-08 Score=109.32 Aligned_cols=316 Identities=11% Similarity=-0.006 Sum_probs=226.8
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC-----CCCHHHHHHHHHHHHHcCC---hhHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE-----VLGPKTLASCIDRLVRAGR---PTQV 182 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~~~~g~---~~~A 182 (503)
++.+.++.....+.+ -+....-.+--...+.|+.++|..+++..-. ..+....+-|+..|.+.+. ..++
T Consensus 359 ~~~~~~~~~~y~~~~---~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 359 AEALRLARLLYQQEP---ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred hHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 445545444333312 2455555555556778899999999886522 2345566678888888766 3333
Q ss_pred HHH----------------------HHHhHHhcCC-CC--CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHH
Q 042598 183 LGF----------------------FERMERDYGF-KR--DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICD 237 (503)
Q Consensus 183 ~~~----------------------f~~m~~~~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~ 237 (503)
+.+ .+......+. ++ +...|..+-.++.. ++.++|+..+.+..... |+.....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQHR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHHH
Confidence 333 2222221122 23 56777777777776 88889999887765433 5554443
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLI 317 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 317 (503)
.+...+...|++++|...|+++... .|+...+..+...+.+.|+ .++|...++.....+ +.+...+..+.
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd-------~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN-------GAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 4455556899999999999998654 4455556666777888888 889999999988754 22333333333
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIE 397 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 397 (503)
....+.|++++|+..|++..+. .|+...|..+...+.+.|+.++|...++...+.. +-+...++.+...+...|+.+
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4445669999999999999875 5678889999999999999999999999999853 235567777888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 398 QAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+|+..+++..+.. +-+...+..+..++...|++++|+..|++..+..
T Consensus 661 eAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 661 QSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999988752 4466789999999999999999999999998765
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=9.2e-13 Score=86.95 Aligned_cols=50 Identities=34% Similarity=0.652 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 042598 231 PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280 (503)
Q Consensus 231 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 280 (503)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998875
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.3e-09 Score=96.80 Aligned_cols=294 Identities=12% Similarity=0.068 Sum_probs=191.1
Q ss_pred CChHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC--HHhHHHHHHHHHhCCChhHHHH
Q 042598 145 KDFKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD--KDSLRLVVEKLCENGYASYAEK 220 (503)
Q Consensus 145 ~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~ 220 (503)
.+.++|.++|.++-. +-+..+--+|-+.|-+.|.++.|+++...+.+..+..-+ ....-.|-.-|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 566788888877733 234445567888888889999999998888875121111 1334456677788888999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 042598 221 LVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLD 300 (503)
Q Consensus 221 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~ 300 (503)
+|..+.+.-.--......|+..|-...+|++|+++-+++.+.|-.+..+ -+...||.......+...++.|..++..
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9888866333445567778888888889999998888888765333211 1223344332222222337778888777
Q ss_pred HHhCCCCCChhhHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC
Q 042598 301 MEYNGVPRNVETFN-VLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG 379 (503)
Q Consensus 301 m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 379 (503)
..+.+ |+.+--+ .+-+.+...|+++.|++.++...+.+..--..+...|..+|...|+.+++...+..+.+....++
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 66543 3333333 34466778888888888888888876555567777888888888888888888888777533333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCc
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA---HNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~ 447 (503)
.-..+-+.-....-.+.|...+.+-..+ +|+...+..||..-.. .|...+-+.+++.|...-++
T Consensus 284 --~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 284 --AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred --HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 3334444444444455565555544443 6888888888876543 34466667777777766543
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.3e-09 Score=95.25 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=209.0
Q ss_pred cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCH
Q 042598 176 AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPD------DKICDLLIKGWCVDGKL 249 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~ 249 (503)
..+.++|.++|-+|.+. -+-+..+.-+|-+.|-+.|.+|.|+++.+.+.+. || .....-|-.-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 56788999999999863 2223445556778888899999999999887552 32 23344577788888999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCC
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN----VETFNVLISNLCKIRR 325 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~ 325 (503)
|.|+++|..+.+.| ..-......|+..|-+..+ +++|.++-.++...+-.+. ...|.-+...+....+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~tre-------W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATRE-------WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 99999999988765 3345567778888888777 7888888887777664443 2356667777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
.+.|..++.+..+.+-+ ++..-..+-......|+++.|.+.++.+.+.+...-..+...|..+|...|+.++...++..
T Consensus 196 ~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999888775422 22222345567778899999999999998876665667788888999999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHHH
Q 042598 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 406 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
+.+. .++...-..+-.--....-.+.|..++.+-+.. +|+...+..++.+-.....++.++.-..++.+|+..
T Consensus 275 ~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 275 AMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8875 445444555555444455566777766665554 488888888888777665666666666666666644
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=4.7e-12 Score=118.20 Aligned_cols=264 Identities=13% Similarity=0.090 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHhc-cC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHH
Q 042598 129 HTDETLSFFTDYFGRRKDFKAIHDFLVDN-KE---VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRL 204 (503)
Q Consensus 129 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ 204 (503)
|+...+ .+...+.+.|++++|++++.+. .. ..|...|..+...+...++.+.|++.++++... +. -+...+..
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~-~~~~~~~~ 83 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DK-ANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-cccccccc
Confidence 333444 4467778889999999999543 22 235666777777778889999999999999864 22 24556777
Q ss_pred HHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCC
Q 042598 205 VVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG-FELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 205 ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~ 283 (503)
++.. ...+++++|.++++..-+. .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccc-ccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 7776 7899999999988765332 2566778888899999999999999999987533 34577788888888999988
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH
Q 042598 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGE 363 (503)
Q Consensus 284 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 363 (503)
.++|++.++...+... .|....+.++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++
T Consensus 162 -------~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 162 -------PDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp -------HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHH
T ss_pred -------HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccc
Confidence 8899999998877542 357788889999999999999999998887763 4455677888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 364 GDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 364 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
|..+++...+.. +.|......+.+.+...|+.++|.++..+..
T Consensus 233 Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 233 ALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 999999988743 3477888889999999999999999887654
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=3.4e-09 Score=103.74 Aligned_cols=291 Identities=12% Similarity=0.026 Sum_probs=215.6
Q ss_pred HHHHHHHccCCchhHHHHHHHHHHhhCCCCCCCHHH-HHHHHHHHhcCCChHHHHHHHHhccC-CCCHHHHH--HHHHHH
Q 042598 98 SLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDET-LSFFTDYFGRRKDFKAIHDFLVDNKE-VLGPKTLA--SCIDRL 173 (503)
Q Consensus 98 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~--~li~~~ 173 (503)
.+...++....+.+..|.+......+. .+++.. |-....+..+.|+++.+.+.+.++.. .|+..... .....+
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 345555555555677777666654441 222333 33334555889999999999998744 45554333 335688
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHh
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDK--------ICDLLIKGWCV 245 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~--------~~~~li~~~~~ 245 (503)
...|+++.|++.++.+.+. -+-+...+..+...|.+.|++++|.+++..+.+....+.. +|..++.....
T Consensus 164 l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 164 LARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999874 3446788999999999999999999999999763222222 33344444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR 325 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 325 (503)
..+.+...++++.+.+. .+.+......+...+...|+ .++|.+++++..+. ++|.. -.++.+....++
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~-------~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~ 309 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD-------HDTAQQIILDGLKR--QYDER--LVLLIPRLKTNN 309 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCC
Confidence 55666777777766432 24577788889999999998 88999999888763 34442 224555567799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
.+++++..++..+.. +-|...+..+-..|.+.+++++|.+.|+.+.+ ..|+...|..+...+.+.|+.++|.+++++
T Consensus 310 ~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 310 PEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998763 22556678889999999999999999999998 579999999999999999999999999997
Q ss_pred HHh
Q 042598 406 MKT 408 (503)
Q Consensus 406 m~~ 408 (503)
-..
T Consensus 387 ~l~ 389 (398)
T PRK10747 387 GLM 389 (398)
T ss_pred HHh
Confidence 653
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=6.9e-11 Score=117.44 Aligned_cols=256 Identities=17% Similarity=0.141 Sum_probs=126.6
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCC
Q 042598 150 IHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI 229 (503)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 229 (503)
.+...+..|..|+..||..+|..|+..|+.+.|- +|.-|+.+ ....+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC----------
Confidence 3444445566666666666666666666666666 66666554 44555566666666666666555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH----HCCCCcCHHHHHHHHHHHHhcCCCCCCC---------CcHHH
Q 042598 230 FPDDKICDLLIKGWCVDGKLDE---AKRLAREMY----RGGFELGTVAYNCILDCVSKLCRKKDPF---------RLDSE 293 (503)
Q Consensus 230 ~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~~~---------~~~~~ 293 (503)
.|...||..|..+|...||+.. +.+.+.... ..|+......+-..+.++-.. ..++. ++++.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~--lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHS--LPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCccc--chhHHHHHHHHHHHHHHHH
Confidence 3566666666666666666443 111111111 112111111111111111100 00000 11223
Q ss_pred HHHHHHHHHhCCCCCChhhHHH---HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 294 AEKVLLDMEYNGVPRNVETFNV---LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 294 a~~~~~~m~~~g~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
+.+++..+.. ..-++. +++-+..... ...++........-.|+..+|.+++.+-.-+|+++.|..++.+
T Consensus 158 llkll~~~Pv------sa~~~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKVPV------SAWNAPFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhCCc------ccccchHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 3333322221 111111 1222222111 1222222211111146677777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042598 371 MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430 (503)
Q Consensus 371 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (503)
|.+.|+..+..-|..|+-+ .|+...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777666666666544 66666666777777777777777777766666666444
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=4.6e-08 Score=89.70 Aligned_cols=290 Identities=10% Similarity=0.021 Sum_probs=220.8
Q ss_pred CCChHHHHHHHHhccCCCCHHHHH--HHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHH
Q 042598 144 RKDFKAIHDFLVDNKEVLGPKTLA--SCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKL 221 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 221 (503)
.|+|.+|+.++.+.....+..+.+ .-..+--..|+.+.+-+.+.+..+. .-.++...+-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999998764433444444 4445556789999999999998864 2345566777778889999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCCCCCCCCcHHHH
Q 042598 222 VKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT-------VAYNCILDCVSKLCRKKDPFRLDSEA 294 (503)
Q Consensus 222 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~~~~~~~~a 294 (503)
++++...-+.+.........+|.+.|++.....+...|.+.|.--|. .+|+.+++-....+. .+.-
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~-------~~gL 248 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG-------SEGL 248 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc-------chHH
Confidence 99987766678889999999999999999999999999999976654 345555554444333 2333
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 295 EKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 295 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
...+++.... ...+...-.+++.-+.+.|+.++|.++..+-.+.+..|+ ...+ -.+.+.++.+.-.+..+.-.+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh
Confidence 3344444321 224556667788889999999999999999988877776 2222 3456777877777777766553
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 375 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
..-+...+.+|-..|.+.+.|.+|.+.|+...+. .|+..+|+.+..+|.+.|+.++|.+++++-.-.-.+|+
T Consensus 324 -h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 324 -HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred -CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 2334478889999999999999999999977764 89999999999999999999999999998775444443
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=5.9e-10 Score=108.08 Aligned_cols=284 Identities=13% Similarity=-0.000 Sum_probs=210.3
Q ss_pred hHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCC-CCCHHhHHHHHHHHHhCCChhHHHHHH-
Q 042598 147 FKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGF-KRDKDSLRLVVEKLCENGYASYAEKLV- 222 (503)
Q Consensus 147 ~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~- 222 (503)
..+|...|.+... ..+..+...+-.+|...+++++|+++|+.+.+.... .-+...|.+.+--+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 3677777776532 234567778888999999999999999998876332 23567777776443221 122222
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 042598 223 KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDM 301 (503)
Q Consensus 223 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m 301 (503)
+++.+..+-...+|.++-++|.-.++.+.|++.|++..+. .| ...+|+.+-.-+..... +|.|...|...
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee-------~d~a~~~fr~A 481 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEE-------FDKAMKSFRKA 481 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHH-------HHhHHHHHHhh
Confidence 2222233456789999999999999999999999998874 45 56778777666666554 78899998877
Q ss_pred HhCCCCCChhhHHHH---HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCC
Q 042598 302 EYNGVPRNVETFNVL---ISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI 378 (503)
Q Consensus 302 ~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 378 (503)
.. .|...||+. .-.|.+.++++.|+-.|++..+-+.. +.+....+...+-+.|+.|+|+++++++.....+
T Consensus 482 l~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k- 555 (638)
T KOG1126|consen 482 LG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK- 555 (638)
T ss_pred hc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-
Confidence 65 677777774 56789999999999999998875422 5566777788888999999999999999886433
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc
Q 042598 379 GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450 (503)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (503)
|...-...+..+...++.++|++.++++++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+...+...
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 3333333456677788999999999999986 3445567888888999999999999999888877644433
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=2.2e-08 Score=98.60 Aligned_cols=295 Identities=11% Similarity=-0.007 Sum_probs=211.0
Q ss_pred HHHHHHHHccCCchhHHHHHHHHHHhhCCCCCCCHH-HHHHHHHHHhcCCChHHHHHHHHhcc-CCCCH--HHHHHHHHH
Q 042598 97 PSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDE-TLSFFTDYFGRRKDFKAIHDFLVDNK-EVLGP--KTLASCIDR 172 (503)
Q Consensus 97 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~~li~~ 172 (503)
..+...++....+.+..|.+......+ ..|+.. .+-....+....|+.+.+.+.+.+.- ..|+. .+.-.....
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 345666666666778888888877655 235443 34455677788899999999998752 22443 344445778
Q ss_pred HHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHH-HHHHHHH---HhcCC
Q 042598 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKIC-DLLIKGW---CVDGK 248 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~-~~li~~~---~~~g~ 248 (503)
+...|+++.|++.++.+.+. -+.+...+..+...+.+.|++++|.+++..+.+....+...+ ..-..++ ...+.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999975 234677889999999999999999999999977423343333 2222222 33333
Q ss_pred HHHHHHHHHHHHHCCC---CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHc
Q 042598 249 LDEAKRLAREMYRGGF---ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVET---FNVLISNLCK 322 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~ 322 (503)
.+++.+.+..+.+..- ..+...+..+...+...|+ .++|.+++++..+.. ||... ..........
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~-------~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD-------HDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC-------hHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcC
Confidence 3334445555554321 1377888889999999998 889999999988754 34332 1222233345
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNE---TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
.++.+.+.+.+++..+. .|+. ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|
T Consensus 312 ~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 67888899999887664 3443 455678889999999999999999655545679999999999999999999999
Q ss_pred HHHHHHHH
Q 042598 400 MSVFEKMK 407 (503)
Q Consensus 400 ~~~~~~m~ 407 (503)
.++|++-.
T Consensus 390 ~~~~~~~l 397 (409)
T TIGR00540 390 AAMRQDSL 397 (409)
T ss_pred HHHHHHHH
Confidence 99999754
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=3.3e-10 Score=112.74 Aligned_cols=247 Identities=12% Similarity=0.082 Sum_probs=175.3
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhc
Q 042598 117 FNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK---EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDY 193 (503)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 193 (503)
|...+.. .|+.|+..||..+|.-||..|+.+.|- +|.-|. .+.+..+++.++.+...+++.+.+.
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4444555 899999999999999999999998887 554442 2457778999999988888887765
Q ss_pred CCCCCHHhHHHHHHHHHhCCChhHH---HHHHHHHhc-----CC-----------------CCCHHHHHHHHHHHHhcCC
Q 042598 194 GFKRDKDSLRLVVEKLCENGYASYA---EKLVKDTAN-----EI-----------------FPDDKICDLLIKGWCVDGK 248 (503)
Q Consensus 194 ~~~~~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~~-----~~-----------------~p~~~~~~~li~~~~~~g~ 248 (503)
.|...+|..|+.+|...||+..- .+.+..+.. |+ .||. .+++.-....|.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHH
Confidence 47889999999999999987652 221111111 11 1222 123333444566
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH
Q 042598 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED 328 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 328 (503)
++.++++...+......-.... +++-+... ....+++.+......-.++..+|.+++..-.-+|+++.
T Consensus 155 waqllkll~~~Pvsa~~~p~~v---fLrqnv~~---------ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQV---FLRQNVVD---------NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHH---HHHHhccC---------CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhh
Confidence 6666666665543221111111 24433333 22344444333322114999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 042598 329 AIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER 395 (503)
Q Consensus 329 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 395 (503)
|..++.+|.+.|+..+..-|-.++-+ .++...+..+..-|.+.|+.|+..|+...+..+.++|.
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999998888888866 88889999999999999999999999999888888665
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=7e-09 Score=93.74 Aligned_cols=197 Identities=12% Similarity=0.008 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
...+..+...|...|++++|.+.|++..+. .+.+...+..+...+...|++++|.+.+++.....+.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 455666667777777777777777776643 123355666666667777777777777766654333445556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 321 (503)
+...|++++|.+.+++..+....+ ....+..+..++...|+ .++|.+.+.+..... +.+...+..+...+.
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-------FDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 666677777776666665432111 12233333334444444 444444444443321 112233444444444
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
..|++++|...+++..+. ...+...+..+...+...|+.++|..+.+.
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444444444333 112223333333344444444444444433
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=9.5e-09 Score=92.85 Aligned_cols=199 Identities=17% Similarity=0.092 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhH
Q 042598 234 KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETF 313 (503)
Q Consensus 234 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 313 (503)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+ .++|.+.++...+.. +.+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~-~~~~~~~ 102 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGE-------LEKAEDSFRRALTLN-PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhC-CCCHHHH
Confidence 344444445555555555555555544332 1223444444455555554 455555555444432 1233445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCH-PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
..+...|...|++++|.+.|++..+.... .....+..+...+...|++++|.+.+.+..+.. ..+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 55555566666666666666665543211 123345555566666677777777776666532 1234456666666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 393 IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.|++++|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777766654 234555566666666677777777776666554
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=4.4e-09 Score=102.17 Aligned_cols=276 Identities=13% Similarity=0.019 Sum_probs=215.9
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC-----CCCHHHHHHHHHHHHHcCChh-HHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE-----VLGPKTLASCIDRLVRAGRPT-QVLG 184 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~-~A~~ 184 (503)
.++|+..|..+.. .+.-+..+...+-++|-..++++++..+|+.... .-+.++|.+.+..+-+.-... -|..
T Consensus 335 ~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 6788888887543 3334557788888999999999999999987632 358889999988775543322 2333
Q ss_pred HHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042598 185 FFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGF 264 (503)
Q Consensus 185 ~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 264 (503)
+.+.+ +-.+.+|.++-++|.-+++.+.|++.|++...--+-..++|+.+-.-+.....+|.|...|+...
T Consensus 413 Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 413 LIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 33333 34679999999999999999999999998866444578999999999999999999999999876
Q ss_pred CcCHHHHHHHH---HHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 042598 265 ELGTVAYNCIL---DCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGC 341 (503)
Q Consensus 265 ~~~~~~~~~li---~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (503)
..|...||++- -.|.|.++ ++.|+-.|+...+-+ +.+.+....+...+.+.|+.|+|+++|++....+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek-------~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEK-------LEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred cCCchhhHHHHhhhhheeccch-------hhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 56777777754 34666666 889999998877655 35677777778889999999999999999877543
Q ss_pred CCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 342 HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG-KKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 342 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
+ |..+--.....+...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 555 k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 555 K-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred C-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3 555555566677889999999999999998 4555 467788888999999999999999888865
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=4.4e-09 Score=97.30 Aligned_cols=312 Identities=14% Similarity=0.096 Sum_probs=206.4
Q ss_pred HHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHH-HHh-CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 042598 172 RLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEK-LCE-NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL 249 (503)
Q Consensus 172 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~-~~~-~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 249 (503)
.|.++|+++.|++++.-+.++ .-+.-...-|.|-.. |.+ -.++.+|.++-+.......-|......--......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 356778888888888777664 111111122222222 222 23556666655544332222222222222333457999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHH
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDA 329 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 329 (503)
++|.+.|.+.....-.-....||+=+. +-+.|+ +++|++.|-.+..- +.-+..+...+.+.|-...+..+|
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt-~e~~~~-------ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLT-AEALGN-------LDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcC-------HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 999999999987654444445554433 233455 89999988765421 013566677778889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 330 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
++++-+.... +.-|......|...|-+.|+-.+|.+.+-+--+ -++.+..+..-|..-|....-+++|+..|++..-
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 9998766543 444678888999999999999999998866544 3566778888888888888899999999997664
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHHHHHhhhh
Q 042598 410 GHNPDSETYDLLMTKW-CAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARKRRRLKQ 488 (503)
Q Consensus 410 g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~k 488 (503)
+.|+..-|..+|..| .+.|++.+|+++|+...+. ++-|......+++.+...+..+..+.+..+ ++ .++-..++.
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~kl-ek-~eki~eir~ 730 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKL-EK-AEKIKEIRE 730 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHHH-HH-HHHHHHHHH
Confidence 589999999998755 5689999999999987654 566777777777777765433333332222 11 123344566
Q ss_pred hhhccccCchhh
Q 042598 489 IRLSFVKKPKRM 500 (503)
Q Consensus 489 i~~~~~~~~~~~ 500 (503)
.|.+-++.+|+.
T Consensus 731 qresd~~qgk~~ 742 (840)
T KOG2003|consen 731 QRESDIKQGKDG 742 (840)
T ss_pred HhhhhhhhccCC
Confidence 666777777764
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.24 E-value=6.6e-08 Score=97.17 Aligned_cols=317 Identities=10% Similarity=0.038 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLVRAGRPTQVLGFFER 188 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 188 (503)
...|..++..+.++ .+-....|..+-..|-..|+.+++....-.. -.+.|...|..+-....+.|.+++|.-.|.+
T Consensus 155 ~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44555555555542 1233445555555555555555554443322 1233445555555555555555555555555
Q ss_pred hHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042598 189 MERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDK-----ICDLLIKGWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 189 m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g 263 (503)
..+. -+++...+--=...|-+.|+...|.+.|.++-.-.+|... +--.++..+...++-+.|.+.++....
T Consensus 233 AI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s-- 308 (895)
T KOG2076|consen 233 AIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS-- 308 (895)
T ss_pred HHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--
Confidence 5442 1122222222334445555555555555555432222211 112234444444545555555554443
Q ss_pred CCcC---HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC---------------------------CChhhH
Q 042598 264 FELG---TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP---------------------------RNVETF 313 (503)
Q Consensus 264 ~~~~---~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~---------------------------~~~~~~ 313 (503)
..-+ ...+++++..|.+... .+.|.....++...... ++..++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q-------~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQ-------SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred hccccccccHHHHHHHHHHHhHH-------HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 1222 2234455555554433 44444444444331111 111111
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWG--CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC 391 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 391 (503)
..+ -++.+....+....+.....+.+ +.-+...|.-+..++.+.|++.+|..++..+......-+...|--+..+|-
T Consensus 382 rl~-icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLM-ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred hHh-hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 111 11122222222222222233332 222334455555666666666666666666655433334555555666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
..|..++|.+.|+...... +-+...--+|-..+-+.|+.++|.+.+..+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 6666666666666555431 2222333344455556666666666665554
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.19 E-value=2.5e-07 Score=93.18 Aligned_cols=324 Identities=11% Similarity=0.076 Sum_probs=207.2
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 042598 115 LGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERD 192 (503)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 192 (503)
-.+..|+...+-.+-|..-|..+-......|++++|.-.+.+.-. +++....--=+..|-+.|+...|..-|.++...
T Consensus 191 K~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 191 KALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 344445544233345667788888888888888888888876522 234444445567788889999999988888764
Q ss_pred cCCCC--CH----HhHHHHHHHHHhCCChhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042598 193 YGFKR--DK----DSLRLVVEKLCENGYASYAEKLVKDTAN--EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGF 264 (503)
Q Consensus 193 ~~~~~--~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 264 (503)
.| |. ...-.++..|...++.+.|.+.++.... +-.-+...+++++..+.+...++.|.....++.....
T Consensus 271 ---~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 271 ---DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 23 22 2223345666777777888888877644 4445667788888888888889999888888887555
Q ss_pred CcCHHHHHH------HHHHHHhcCCCCCC-------------CCcHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcc
Q 042598 265 ELGTVAYNC------ILDCVSKLCRKKDP-------------FRLDSEAEKVLLDMEYNG--VPRNVETFNVLISNLCKI 323 (503)
Q Consensus 265 ~~~~~~~~~------li~~~~~~g~~~~~-------------~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~ 323 (503)
.+|..-+.+ -.+.++..|+.... +...+..+.+...+.... +.-+...|.-+..+|...
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 555444310 00111111111000 011233344444444444 334566777888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 042598 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG-KKDYYEFLTRLCGIERIEQAMSV 402 (503)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 402 (503)
|++.+|+++|..+...-..-+...|-.+..+|-..|..++|.+.|+.++.. .|+ ...-..|-..+-+.|+.++|.+.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 999999999998887644446778888888888999999999999988873 333 33445566678888999999998
Q ss_pred HHHHHhCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 403 FEKMKTDG--------HNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 403 ~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
++.|..-+ ..|+...--.....+...|+.++=+.+..+|+.
T Consensus 506 L~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 506 LEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88876211 122223333344555666666665555555543
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=2e-08 Score=102.67 Aligned_cols=265 Identities=8% Similarity=-0.057 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHH-----cCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHH---------hCCChhHHHHHHHHH
Q 042598 161 LGPKTLASCIDRLVR-----AGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLC---------ENGYASYAEKLVKDT 225 (503)
Q Consensus 161 ~~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~ 225 (503)
.+...|...+.+-.. .++.++|++.|++..+. .|+ ...|..+..+|. ..+++++|...+++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 345555555554322 13356778888877653 454 344444444333 223466777777776
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC
Q 042598 226 ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG 305 (503)
Q Consensus 226 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g 305 (503)
....+-+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|+ .++|...++...+..
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~-------~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQ-------LEEALQTINECLKLD 402 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhcC
Confidence 55444566677777777777777777877777777653 2234566666677777777 677777777776654
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC-HHHH
Q 042598 306 VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG-KKDY 383 (503)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~ 383 (503)
.. +...+..++..+...|++++|+..+++..+.. .| +...+..+..++...|+.++|.+.+..+... .|+ ....
T Consensus 403 P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~ 478 (553)
T PRK12370 403 PT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAV 478 (553)
T ss_pred CC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHH
Confidence 22 22223333444555677777777777766542 23 2334555566666777777777777766542 222 2334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTD-GHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+.+...|+..| +.|...++.+.+. +..++...+ +-..|.-.|+-+.+..+ +++.+.|
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44445556655 4666666655532 112222222 33334445565555544 6666554
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.2e-07 Score=86.78 Aligned_cols=252 Identities=10% Similarity=0.052 Sum_probs=183.2
Q ss_pred HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCH-H
Q 042598 175 RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF---PDDKICDLLIKGWCVDGKL-D 250 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~-~ 250 (503)
...+.+++++=.+..... |+.-+...-+....+.-...++|.|+.+|+++.+..+ -|..+|+.++-.--....+ -
T Consensus 239 el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 334555555555555543 5554444444444455566777777777777765422 3556776666543332221 1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 042598 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAI 330 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 330 (503)
.|..+++- . +-...|+.++.+-|+-.++ .++|...|++..+.+. .....|+.|..-|....+...|+
T Consensus 318 LA~~v~~i---d--KyR~ETCCiIaNYYSlr~e-------HEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 318 LAQNVSNI---D--KYRPETCCIIANYYSLRSE-------HEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHHHHHHh---c--cCCccceeeehhHHHHHHh-------HHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHH
Confidence 22222221 1 2234456666666666555 8999999999887653 46778999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 042598 331 KLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (503)
+-|+..++-+ +-|-..|-.+-.+|.-.+...=|+-+|++..+.. +-|...|.+|-++|.+.++.++|.+-|......|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999998864 3477899999999999999999999999998843 3477899999999999999999999999998766
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 411 HNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 411 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
..+...+..|...|-+.++.++|...|++.++
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34668899999999999999999999888765
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.2e-08 Score=89.89 Aligned_cols=269 Identities=12% Similarity=0.070 Sum_probs=198.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCC-CCHHhHHHHHHHHHhCCChh-HHHHHHHHHhcCCCCCHHH
Q 042598 158 KEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFK-RDKDSLRLVVEKLCENGYAS-YAEKLVKDTANEIFPDDKI 235 (503)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~-~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~p~~~~ 235 (503)
|+..+...-+....+.-...+++.|+.+|+++.++.... -|..+|..++-.--.+..+. .|..+++ + .+--..|
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-i---dKyR~ET 332 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-I---DKYRPET 332 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-h---ccCCccc
Confidence 454444444445555667889999999999999862222 26688888874433322222 1222222 1 1133467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV 315 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (503)
+.++.+.|.-.++.++|...|+...+.+ +-....|+.+-+-|....+ ...|.+-++...+-. +.|-..|--
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKN-------t~AAi~sYRrAvdi~-p~DyRAWYG 403 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKN-------THAAIESYRRAVDIN-PRDYRAWYG 403 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcc-------cHHHHHHHHHHHhcC-chhHHHHhh
Confidence 8888899999999999999999998864 3346788888899998877 678888888777644 478899999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 394 (503)
+.++|.-.+...=|+-.|++..+. +| |...|.+|-.+|.+.++.++|.+.|+.....| ..+...+..|.+.|-+.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELK 480 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999998874 44 67899999999999999999999999999865 336688999999999999
Q ss_pred CHHHHHHHHHHHHh----CCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 395 RIEQAMSVFEKMKT----DGHNPD-S-ETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 395 ~~~~A~~~~~~m~~----~g~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
+.++|.+.|++-.+ .|..-+ . ..---|..-+.+.+++++|..+.....
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99999999887654 232222 1 111224556778888888877655543
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=7.8e-09 Score=101.16 Aligned_cols=242 Identities=19% Similarity=0.146 Sum_probs=178.6
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHhc------C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CC
Q 042598 200 DSLRLVVEKLCENGYASYAEKLVKDTAN------E-IFPDDKI-CDLLIKGWCVDGKLDEAKRLAREMYRG-----G-FE 265 (503)
Q Consensus 200 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~ 265 (503)
.+...+...|...|+++.|+.+++...+ | ..|...+ .+.+-..|...+++++|..+|+++..- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5566688999999999999999887532 1 2244333 334667888889999999999998852 2 12
Q ss_pred cC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHHc---C
Q 042598 266 LG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV-ETFNVLISNLCKIRRSEDAIKLFYRMGEW---G 340 (503)
Q Consensus 266 ~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g 340 (503)
|. ..+++.|-..|++.|++.++....+.|.+++....... .+.+ ..++.+...|+..+++++|..+++...+. -
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 45677777889999998877777788888887733221 1233 34667788899999999999999875432 1
Q ss_pred CCCC----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHH--
Q 042598 341 CHPN----ETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYA--I-GKKDYYEFLTRLCGIERIEQAMSVFEKMK-- 407 (503)
Q Consensus 341 ~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 407 (503)
..++ ..+++.|-..|...|++++|.++|+.+++. +.. + ....++.|-..|.+.++.++|.++|.+-.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 368999999999999999999999988763 111 2 23567778888999999999999988654
Q ss_pred --hCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 408 --TDG-HNPD-SETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 408 --~~g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
..| ..|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 223 1233 3689999999999999999999988765
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=2.6e-07 Score=91.73 Aligned_cols=290 Identities=14% Similarity=0.157 Sum_probs=200.1
Q ss_pred HHHHHhcCCChHHHHHHHHhcc-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHH-h--
Q 042598 137 FTDYFGRRKDFKAIHDFLVDNK-EVLGPK-TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLC-E-- 211 (503)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~-~-- 211 (503)
....+...|++++|++.+.+.. ...|.. ........+.+.|+.++|..+|..+.++ .|+...|...+..+. -
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhc
Confidence 3455678899999999998753 345544 5567778889999999999999999976 677777665555544 2
Q ss_pred ---CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCC
Q 042598 212 ---NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL-DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDP 287 (503)
Q Consensus 212 ---~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~ 287 (503)
..+.+...++|+++.... |.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|....+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K---- 158 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK---- 158 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH----
Confidence 225677788898886644 3322222222112211122 3455666677777754 355666555554333
Q ss_pred CCcHHHHHHHHHHHHh----CC----------CCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 042598 288 FRLDSEAEKVLLDMEY----NG----------VPRNVETF--NVLISNLCKIRRSEDAIKLFYRMGEWGCHPN-ETTFLV 350 (503)
Q Consensus 288 ~~~~~~a~~~~~~m~~----~g----------~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 350 (503)
..-..+++..... .+ -+|....| .-+.+.|-..|++++|+++.++.++. .|+ +..|..
T Consensus 159 ---~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~ 233 (517)
T PF12569_consen 159 ---AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMT 233 (517)
T ss_pred ---HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 3334444444332 11 12444344 55677888999999999999999886 455 577888
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH------H--HHHH
Q 042598 351 LIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET------Y--DLLM 422 (503)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~------~--~~li 422 (503)
-...+-+.|++++|.+.++...+... -|...-+-.+..+.++|++++|.+++....+.+..|-... | ....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 88899999999999999999998653 3677777788899999999999999999886654332222 2 3455
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 042598 423 TKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+|.+.|++..|+.-|....+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 789999999999887766654
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.13 E-value=9.1e-08 Score=96.90 Aligned_cols=317 Identities=12% Similarity=0.047 Sum_probs=222.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCC------CCHH------HHHHHHHHHHHcCChhHHHHHHHHhHHhc
Q 042598 126 NFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEV------LGPK------TLASCIDRLVRAGRPTQVLGFFERMERDY 193 (503)
Q Consensus 126 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~------~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 193 (503)
+-.+.....|.+....-..|+++.|+..|++.... +|.. +--.+...+-..++++.|.++|..+.+.
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 33366778888888888888888888887754211 1221 1122334445567788888888888764
Q ss_pred CCCCCH-HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHH
Q 042598 194 GFKRDK-DSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG-FELGTVAY 271 (503)
Q Consensus 194 ~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~ 271 (503)
.|.- ..|--+.......+...+|..++.+.......+...++.+-..+.+...+..|.+-|....+.- ..+|.+..
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 3443 2333333233345677888888888876656666677777778888888888888777665432 23577776
Q ss_pred HHHHHHHHhcCC-----CCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 042598 272 NCILDCVSKLCR-----KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346 (503)
Q Consensus 272 ~~li~~~~~~g~-----~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (503)
-+|-+.|.+.-. .+......++|.++|....+.. +.|...-|-+.-.++..|++.+|.++|.+..+... -+..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCc
Confidence 667665554311 1223345789999999888755 35777777788889999999999999999998754 2556
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042598 347 TFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425 (503)
Q Consensus 347 t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (503)
+|..+.++|...|++..|.++|+...+. .-.-+..+.+.|.+++.++|++.+|.+...........-..+-||..+...
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 7888999999999999999999988776 445677889999999999999999999887776543232345565444322
Q ss_pred ------------------HhcCChHHHHHHHHHHHHCCCc
Q 042598 426 ------------------CAHNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 426 ------------------~~~g~~~~A~~~~~~m~~~g~~ 447 (503)
...+..+.|.++|.+|...+-.
T Consensus 762 kla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 762 KLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1224567899999999888644
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=2.9e-06 Score=78.20 Aligned_cols=291 Identities=12% Similarity=0.029 Sum_probs=220.3
Q ss_pred HHHHHHHccCCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC---CCCHHHHHHHHHHHH
Q 042598 98 SLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE---VLGPKTLASCIDRLV 174 (503)
Q Consensus 98 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~ 174 (503)
.+-..++....+.+..|......-.+ .+-.| ...|-.-..+....|+.+.+-.++.+.-. .++..+.-+......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae-~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAE-HGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhh-cCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 44445555555567777777666555 33333 45566667778889999999999987743 345667777788889
Q ss_pred HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-CCCCC-------HHHHHHHHHHHHhc
Q 042598 175 RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-EIFPD-------DKICDLLIKGWCVD 246 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~p~-------~~~~~~li~~~~~~ 246 (503)
..|+.+.|..-.+++.+. -..+.........+|.+.|++.....+...+.+ ++.-| ..+|+.++.-....
T Consensus 165 ~~~d~~aA~~~v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 165 NRRDYPAARENVDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred hCCCchhHHHHHHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999988888763 345788899999999999999999999999976 54443 34677888877777
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH
Q 042598 247 GKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326 (503)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 326 (503)
+..+.-...++..... .+-+...-.+++.-+.++|+ .++|.++..+-.+++..++. ...-.+.+-++.
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~-------~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~ 310 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGD-------HDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDP 310 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHhccChhH----HHHHhhcCCCCc
Confidence 7777766666665543 34566677778888899988 78999999888877655552 122345667777
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 327 EDAIKLFYRMGEW-GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 327 ~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
+.-++..++-.+. +..| ..+.+|-.-|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+.|.+.|+.++|.+++++
T Consensus 311 ~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 7777777665443 4444 7778889999999999999999997766 679999999999999999999999999987
Q ss_pred HHh
Q 042598 406 MKT 408 (503)
Q Consensus 406 m~~ 408 (503)
-..
T Consensus 387 ~L~ 389 (400)
T COG3071 387 ALL 389 (400)
T ss_pred HHH
Confidence 663
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=8.4e-08 Score=98.18 Aligned_cols=233 Identities=13% Similarity=0.028 Sum_probs=168.1
Q ss_pred CCHHhHHHHHHHHHh-----CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHC
Q 042598 197 RDKDSLRLVVEKLCE-----NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV---------DGKLDEAKRLAREMYRG 262 (503)
Q Consensus 197 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~ 262 (503)
.+...|...+.+... .+..++|..+|++.....+-+...|..+..+|.. .+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 345566666666422 2346788999998866444455666665554442 24588999999999876
Q ss_pred CCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 042598 263 GFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH 342 (503)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 342 (503)
+ +-+...+..+-..+...|+ .++|...|++..+.+ +.+...|..+...|...|++++|+..+++..+.+
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-- 402 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSE-------YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-- 402 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 4 3356778788778888888 889999999988765 3456678888899999999999999999998864
Q ss_pred CCH-HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 042598 343 PNE-TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS-ETYDL 420 (503)
Q Consensus 343 p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 420 (503)
|+. ..+..++..+...|++++|.+.++++.+....-+...+..+...|...|+.++|...++++... .|+. ...+.
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~ 480 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNL 480 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHH
Confidence 432 2333445556778999999999999877432224455677788888999999999999987754 4443 44555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 042598 421 LMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
+...|+..| ++|...++.+.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHH
Confidence 666777777 5888878777664
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.06 E-value=8.8e-07 Score=89.99 Aligned_cols=296 Identities=14% Similarity=0.059 Sum_probs=182.7
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcC--CCCCH------HhHHHHHHHHHhCCChhHHHHH
Q 042598 150 IHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYG--FKRDK------DSLRLVVEKLCENGYASYAEKL 221 (503)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~------~~~~~ll~~~~~~g~~~~a~~~ 221 (503)
|.+++...+..+.+...|.+...+...|+++.|...|+....... ..+|. .+-..+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 333333333345566666666666666666666666665543200 11122 1112233344445566666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 042598 222 VKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDM 301 (503)
Q Consensus 222 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m 301 (503)
|..+.+..+--+..|--+.......+...+|...+.+..... .-+...++.+-+.+.+... +..|.+-|...
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~-------~~~a~k~f~~i 590 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE-------WKPAKKKFETI 590 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh-------hcccccHHHHH
Confidence 666544222222222222222222355666666666655432 3344444445555555544 34455544444
Q ss_pred HhC-CCCCChhhHHHHHHHHHc------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHH
Q 042598 302 EYN-GVPRNVETFNVLISNLCK------------IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368 (503)
Q Consensus 302 ~~~-g~~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 368 (503)
... -..+|..+.-+|-+.|.+ .+..++|+++|.+..... +-|...-|.+.-.++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 332 112566665555554432 245688999999988764 336777778888889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 042598 369 DRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK-TDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 369 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 447 (503)
.++.+... -+..+|-.+..+|..+|++-.|+++|+.-. +..-.-+..+.+.|..++-+.|.+.+|.+.+.........
T Consensus 670 sqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 670 SQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 99999643 345567788999999999999999999765 4444557788999999999999999999999888877655
Q ss_pred cCcccccc
Q 042598 448 VKPKEYRV 455 (503)
Q Consensus 448 p~~~~~~~ 455 (503)
-....|+.
T Consensus 749 ~~~v~FN~ 756 (1018)
T KOG2002|consen 749 NTSVKFNL 756 (1018)
T ss_pred cchHHhHH
Confidence 55566665
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1e-07 Score=85.05 Aligned_cols=228 Identities=16% Similarity=0.086 Sum_probs=135.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHhcCC
Q 042598 205 VVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN-CILDCVSKLCR 283 (503)
Q Consensus 205 ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~ 283 (503)
+-++|.+.|.+.+|.+.|+.-.. -.|-+.||-.|-+.|.+..+++.|+.+|.+-.+. -|-.+||- -+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~-q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLT-QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHh
Confidence 34444444444444444443322 1133444444555555555555555555544432 23333321 12222222233
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH
Q 042598 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGE 363 (503)
Q Consensus 284 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 363 (503)
.++|.++++...+.. +.++.....+..+|.-.++++-|+.+|+++..-|+. +...|+.+--+|.-.+++|-
T Consensus 306 -------~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 306 -------QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred -------HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 456666666555432 234445555556677778888888888888888766 66777777777888888888
Q ss_pred HHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 364 GDEMIDRMKSAGYAIGK--KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 364 a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
++.-|+.....--.|+. .+|..+-......|++..|.+-|+-....+ .-+...+|.|.-.-.+.|++++|..+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 88888877764333332 345555556667788888888888766542 335567777777777888888888888877
Q ss_pred HHCC
Q 042598 442 VRNG 445 (503)
Q Consensus 442 ~~~g 445 (503)
....
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 6644
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=1.2e-07 Score=93.00 Aligned_cols=244 Identities=15% Similarity=0.121 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHh----cCC-CCCHHh-HHHHHHHHHhCCChhHHHHHHHHHhc-------CCC
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERD----YGF-KRDKDS-LRLVVEKLCENGYASYAEKLVKDTAN-------EIF 230 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~ 230 (503)
.+...|...|...|+++.|+.+|+...+. +|. .|.+.+ .+.+-..|...+++++|..+|+++.. ...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35566899999999999999999886543 232 233333 34567788999999999999998722 122
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-cCH-HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHH
Q 042598 231 PD-DKICDLLIKGWCVDGKLDEAKRLAREMYR-----GGFE-LGT-VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDME 302 (503)
Q Consensus 231 p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-~~~-~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~ 302 (503)
|. ..+++.|-..|.+.|++++|...+++..+ .|.. +++ ..++.+...|+..++.+.+..++..+.+++....
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 35778888899999999999888877653 2222 222 2456667777777874444444444444444222
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHH--
Q 042598 303 YNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW----GC--HP-NETTFLVLIKSLYQAARVGEGDEMIDRMKS-- 373 (503)
Q Consensus 303 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~-- 373 (503)
.....--..+++.|-..|.+.|++++|.++|++.... +. .+ ....++.+-..|.+.+.+++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2111122468899999999999999999999987542 11 22 246678889999999999999999987544
Q ss_pred --cCCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 374 --AGYA-IG-KKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 374 --~g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
.|.. |+ ..+|..|...|...|+++.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2322 23 3678899999999999999999988665
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=7e-08 Score=85.99 Aligned_cols=234 Identities=12% Similarity=-0.010 Sum_probs=185.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 042598 166 LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV 245 (503)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 245 (503)
-+.+-.+|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-++|.+.++++.|+.+|.+-.+..+-|+....-+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 367889999999999999999887765 67888999999999999999999999998776654455444557788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR 325 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 325 (503)
.++.++|.++|+...+.. ..++.....+...|.-.++ .+.|...+.++...|+. +...|+.+--+|.-.++
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~-------PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNN-------PEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCC-------hHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 899999999999988753 3345555555555665555 78999999999999985 66777777777888899
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNE--TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (503)
+|-++.-|++....-..|+. ..|..+-......|++..|.+.|+...... .-+...+|.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 99999999887665444443 455566667778899999999999888754 235678888888889999999999999
Q ss_pred HHHHhCCCCCC
Q 042598 404 EKMKTDGHNPD 414 (503)
Q Consensus 404 ~~m~~~g~~p~ 414 (503)
+..... .|+
T Consensus 453 ~~A~s~--~P~ 461 (478)
T KOG1129|consen 453 NAAKSV--MPD 461 (478)
T ss_pred HHhhhh--Ccc
Confidence 987754 454
No 59
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.99 E-value=7.4e-07 Score=86.67 Aligned_cols=300 Identities=8% Similarity=-0.026 Sum_probs=149.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc---cC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH
Q 042598 125 ANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN---KE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK 199 (503)
Q Consensus 125 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~ 199 (503)
.|+..+...|-.=...|-+.|.+-.+..++... |. .--..+|+.--..|.+.+.++-|+.+|....+- +..+.
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchh
Confidence 677777777777777777777776655555432 32 122346777777777777777777777666652 23344
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 042598 200 DSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279 (503)
Q Consensus 200 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 279 (503)
..|......=-..|..+....+|++....++.....|-...+-+-..|++..|..++....+.. .-+...|-+-+..-.
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhh
Confidence 5555555444455555555555555554444444455444555555555555555555555432 113344444444444
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHh
Q 042598 280 KLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN-ETTFLVLIKSLYQA 358 (503)
Q Consensus 280 ~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~ 358 (503)
.... ++.|..+|......+ ++...|.--+..---.+..++|++++++..+. -|+ .-.|..+-..+-+.
T Consensus 630 en~e-------~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 630 ENDE-------LERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred cccc-------HHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 4433 455555555554432 44444444444444445555555555444432 222 22333333444444
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 042598 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALF 438 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 438 (503)
++++.|.+.|..-.+ .++-....|-.+.+.--+.|.+-.|..+++...-++ +.|...|-..|..=.+.|+.+.|..+.
T Consensus 699 ~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 455554444443222 111222334444444444444444444444443221 334444444444444444444444443
Q ss_pred HH
Q 042598 439 DE 440 (503)
Q Consensus 439 ~~ 440 (503)
.+
T Consensus 777 ak 778 (913)
T KOG0495|consen 777 AK 778 (913)
T ss_pred HH
Confidence 33
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=9.8e-07 Score=87.66 Aligned_cols=265 Identities=15% Similarity=0.062 Sum_probs=188.2
Q ss_pred HHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---
Q 042598 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVD--- 246 (503)
Q Consensus 170 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 246 (503)
...+...|++++|++.++.-.. .+.............+.+.|+.++|..++..+.+..+.|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 3456889999999999988664 33334556677888999999999999999999765544444455555555222
Q ss_pred --CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 042598 247 --GKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR 324 (503)
Q Consensus 247 --g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 324 (503)
.+.+...++|+++... -|.......+.-.+.. |+ ..-..+...+..+...|+| .+++.+-..|....
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~-g~-----~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLE-GD-----EFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCC-HH-----HHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 2577888899988764 2443333333222222 22 1134566677777788875 35666666677666
Q ss_pred CHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 042598 325 RSEDAIKLFYRMGEW----G----------CHPNE--TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG-KKDYYEFL 387 (503)
Q Consensus 325 ~~~~A~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li 387 (503)
+.+-..+++...... + -.|+. .++..+...|-..|++++|.++++..++. .|+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 666666666665432 1 12333 35566778888999999999999999984 455 67888889
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (503)
+.|-+.|++++|.+.++...+.. .-|...=+-.+..+.++|++++|.+++....+.+..|-.
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 99999999999999999998764 346667777888899999999999999999888864443
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.1e-05 Score=75.91 Aligned_cols=348 Identities=10% Similarity=0.066 Sum_probs=201.2
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHhccC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHH
Q 042598 128 SHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE-VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVV 206 (503)
Q Consensus 128 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll 206 (503)
.|+..+|.+.|+.=.+.++++.|..++++.-. .|++..|--....=-++|.+..|..+|+...+..| |...-..++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lf 247 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILF 247 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHH
Confidence 46666676666666666666666666666532 46666666666666666666666666666655322 222222233
Q ss_pred HHH----HhCCChhHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCcCHHHHH
Q 042598 207 EKL----CENGYASYAEKLVKDTANEIFPD--DKICDLLIKGWCVDGKLDEAKRL--------AREMYRGGFELGTVAYN 272 (503)
Q Consensus 207 ~~~----~~~g~~~~a~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~~~~~~~~ 272 (503)
.++ .++..++.|.-+|+-..+.++.+ ...|......=-+.|+-....++ |+.+++.+ .-|-.+|-
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWf 326 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHH
Confidence 333 34455666666666555544444 34454444444445554433332 33333322 33444555
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCh--hhHHHHHH--------HHHccCCHHHHHHHHHHHHHcCCC
Q 042598 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV--ETFNVLIS--------NLCKIRRSEDAIKLFYRMGEWGCH 342 (503)
Q Consensus 273 ~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~ 342 (503)
-.++.--..|+ .+...++|+.....- +|-. ..|.-.|. .=....+++.+.++|+...+. ++
T Consensus 327 dylrL~e~~g~-------~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 327 DYLRLEESVGD-------KDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred HHHHHHHhcCC-------HHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 55555555566 678888888877542 3311 12222221 113467888899999888772 33
Q ss_pred CCHHHHHHHHHHHH----HhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042598 343 PNETTFLVLIKSLY----QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETY 418 (503)
Q Consensus 343 p~~~t~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 418 (503)
-...||.-+=-.|+ +..++..|.+++...+ |..|-..+|...|..-.+.+.+|.+.++++...+.+ +-|..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 34566665444443 5677888888887765 567778888888888888888888888888888764 4466777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-ccCcccccchHHHhcCchhhhcccccccHHHHHHHHHHhhhhhhhcccc
Q 042598 419 DLLMTKWCAHNRVDKANALFDEAVRNGV-EVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARKRRRLKQIRLSFVK 495 (503)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ki~~~~~~ 495 (503)
.-....=...|+.+.|..+|.-.++... ......+...+.+-- ..+..+.+..+.++..+.....+ +..||.+
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi---~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI---EEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh---hcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 7666666677888888888877776532 111122222222221 23445556666666665544433 6655543
No 62
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=6.5e-07 Score=83.27 Aligned_cols=359 Identities=11% Similarity=0.030 Sum_probs=212.2
Q ss_pred hHHHHHHHHHHhhC-CCCCCC--HHHHHHHHHHHhcCCChHHHHHHHHhc-cCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 042598 111 GRAILGFNHWLTQN-ANFSHT--DETLSFFTDYFGRRKDFKAIHDFLVDN-KEVLGPKTLASCIDRLVRAGRPTQVLGFF 186 (503)
Q Consensus 111 ~~~a~~~~~~~~~~-~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f 186 (503)
...|+.+++....+ +.+.-+ ....+.+--.+.+.|+++.|...|+.+ ...|+..+--.|+-++...|+.++..+.|
T Consensus 253 fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf 332 (840)
T KOG2003|consen 253 FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAF 332 (840)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHH
Confidence 34666677666543 111111 122333334456778888887777654 44567666666666667778888888888
Q ss_pred HHhHHhcC-----------CCCCHHhHHHHH-----HHHHhCCChhHHHHHHHHHh---c-CCCCCHH---HH-------
Q 042598 187 ERMERDYG-----------FKRDKDSLRLVV-----EKLCENGYASYAEKLVKDTA---N-EIFPDDK---IC------- 236 (503)
Q Consensus 187 ~~m~~~~~-----------~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~---~-~~~p~~~---~~------- 236 (503)
.+|..-.| -.|+....|--| .-+-+.. -..|++.+-... . -+.||-. -|
T Consensus 333 ~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~ 411 (840)
T KOG2003|consen 333 QKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKA 411 (840)
T ss_pred HHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHH
Confidence 88765422 112333333222 1111111 112222221111 1 1222210 00
Q ss_pred -----------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH---------------------------
Q 042598 237 -----------DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCV--------------------------- 278 (503)
Q Consensus 237 -----------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--------------------------- 278 (503)
-.-..-+.+.|+++.|.+++.-..+..-+.-...-|.|-..+
T Consensus 412 s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~ 491 (840)
T KOG2003|consen 412 SQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA 491 (840)
T ss_pred hhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH
Confidence 011234678899999999988877654332222222222111
Q ss_pred --HhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 279 --SKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356 (503)
Q Consensus 279 --~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 356 (503)
...|+..-+-+.+++|.+.+.+.....-.-....||+=+ .+-..|+.++|++.|-++..- +.-+......+...|-
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye 569 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYE 569 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 122222223345788888888877632222222333322 356678999999999887543 2225667777888888
Q ss_pred HhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042598 357 QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
...+..+|.+++-+... -++-|.....-|.+.|-+.|+-..|++..-+--+. ++-|..|..=|..-|....-+++|+.
T Consensus 570 ~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 88888899988877655 34556778888999999999999999876544332 46677887778888888888999999
Q ss_pred HHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHH
Q 042598 437 LFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEK 478 (503)
Q Consensus 437 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 478 (503)
+|++.. -+.|+..-|.+++..|... .+..+.+.++...
T Consensus 648 y~ekaa--liqp~~~kwqlmiasc~rr--sgnyqka~d~yk~ 685 (840)
T KOG2003|consen 648 YFEKAA--LIQPNQSKWQLMIASCFRR--SGNYQKAFDLYKD 685 (840)
T ss_pred HHHHHH--hcCccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 998764 3679999999888777652 3333444444433
No 63
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.91 E-value=2.6e-05 Score=76.29 Aligned_cols=315 Identities=9% Similarity=-0.037 Sum_probs=142.9
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc-------cCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 042598 114 ILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN-------KEVLGPKTLASCIDRLVRAGRPTQVLGFF 186 (503)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~f 186 (503)
|..+++..++ .++-+...|.+....=-..|+++.+..++.+. |...+..-|-.=...|-+.|..-.+..+.
T Consensus 425 AkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 425 AKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence 3344444443 34444455544444444455554444444321 33444444444444455555555555444
Q ss_pred HHhHHhcCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042598 187 ERMERDYGFKR--DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGF 264 (503)
Q Consensus 187 ~~m~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 264 (503)
.....- |+.- -..+|+.-...|.+.+.++-|..+|....+-.+-+...|......=-..|..+....++++.+.. +
T Consensus 503 ~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~ 580 (913)
T KOG0495|consen 503 RAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-C 580 (913)
T ss_pred HHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-C
Confidence 444432 2211 12445555555555555555555555444433344444544444444445555555555555443 1
Q ss_pred CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 042598 265 ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (503)
+-....|-....-+-..|+ +..|..++....+... -+...|-+-+..-..+..++.|..+|.+... ..|+
T Consensus 581 pkae~lwlM~ake~w~agd-------v~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgT 650 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGD-------VPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGT 650 (913)
T ss_pred CcchhHHHHHHHHHHhcCC-------cHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCc
Confidence 2222333333333344444 4455555544444321 2444455555555555555555555555443 2344
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042598 345 ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424 (503)
Q Consensus 345 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 424 (503)
...|.--+..---.++.++|.+++++.++. +..-...|-.+-+.+-+.++++.|.+.|..-.+. ++-..-.|-.|...
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakl 728 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKL 728 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHH
Confidence 444444444444445555555555555441 1112234444444455555555555554443322 22223344444444
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 042598 425 WCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~ 444 (503)
=-+.|++-.|..++++..-.
T Consensus 729 eEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHhcchhhHHHHHHHHHhc
Confidence 44445555555555554443
No 64
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=1.7e-09 Score=64.11 Aligned_cols=34 Identities=38% Similarity=0.666 Sum_probs=27.2
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 304 NGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMG 337 (503)
Q Consensus 304 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (503)
+|+.||.+|||++|.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888773
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=2.8e-05 Score=75.42 Aligned_cols=264 Identities=14% Similarity=0.026 Sum_probs=161.3
Q ss_pred HHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHH----hCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 042598 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLC----ENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV 245 (503)
Q Consensus 170 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 245 (503)
...+...|++++|.+++++..+. .+.|...+.. ...+. ..+..+.+.+.++........+......+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH
Confidence 34556789999999999988764 2334444442 22222 24555556665554222222333455566678888
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC-CCCh--hhHHHHHHHHHc
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV-PRNV--ETFNVLISNLCK 322 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~ 322 (503)
.|++++|.+.+++..+.. +.+...+..+...+...|+ +++|...+++...... .++. ..|..+...+..
T Consensus 127 ~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~-------~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 127 AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR-------FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC-------HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 999999999999998864 3346677888888888888 8899999988776432 1232 345577888999
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHHhCCHhHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHccC
Q 042598 323 IRRSEDAIKLFYRMGEWGC-HPNETTF-L--VLIKSLYQAARVGEGDEM--IDRMKSAGY--AIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~li~~~~~~~~~~~a~~~--~~~m~~~g~--~~~~~~~~~li~~~~~~g 394 (503)
.|++++|..+|++...... .+..... + .++.-+...|..+.+.+. ......... ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 9999999999999864322 1222211 1 233333344443333332 111111111 111122235667778899
Q ss_pred CHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 395 RIEQAMSVFEKMKTDGHN---P-----DSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~---p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
+.++|.++++.+...... - .....-...-++...|+.++|.+.+.+....
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999988753222 0 1111222223456889999999999887754
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.86 E-value=8.6e-06 Score=76.38 Aligned_cols=94 Identities=13% Similarity=-0.132 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHH
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG-TVAYNCILDCVS 279 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~ 279 (503)
.|..+-..|...|+.++|...|++..+..+.+...|+.+...+...|++++|.+.|+...+. .|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444445555566666655555554433344555555555555566666666655555543 222 344444444555
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 280 KLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 280 ~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
..|+ .++|.+.|+...+
T Consensus 144 ~~g~-------~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGR-------YELAQDDLLAFYQ 160 (296)
T ss_pred HCCC-------HHHHHHHHHHHHH
Confidence 5554 4555555555444
No 67
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=3.8e-09 Score=62.59 Aligned_cols=32 Identities=47% Similarity=0.822 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 410 GHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 410 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.81 E-value=6.8e-06 Score=77.06 Aligned_cols=225 Identities=14% Similarity=0.016 Sum_probs=155.7
Q ss_pred CChhHHHHHHHHHhcC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCC
Q 042598 213 GYASYAEKLVKDTANE--IFPD--DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288 (503)
Q Consensus 213 g~~~~a~~~~~~~~~~--~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 288 (503)
+..+.++.-+.++... ..|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+-..+...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~----- 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN----- 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC-----
Confidence 4556666666666542 2222 3567788888999999999999999998863 3357899999999999998
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHH
Q 042598 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368 (503)
Q Consensus 289 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 368 (503)
+++|...|+...+.. +-+...|..+..++...|++++|++.|++..+. .|+..........+...++.++|.+.+
T Consensus 114 --~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 114 --FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred --HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999999988754 235678888888999999999999999998875 344322222222334567899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 369 DRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD---GH---NPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 369 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
...... ..++... ..++..+ .|+..++ +.++.+.+. .. +.....|..+...+.+.|++++|...|++..
T Consensus 189 ~~~~~~-~~~~~~~-~~~~~~~--lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEK-LDKEQWG-WNIVEFY--LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhh-CCccccH-HHHHHHH--ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776543 2333222 2333333 4455444 344444421 10 1133578899999999999999999999999
Q ss_pred HCCCccCccccc
Q 042598 443 RNGVEVKPKEYR 454 (503)
Q Consensus 443 ~~g~~p~~~~~~ 454 (503)
+.++ |+..-+.
T Consensus 264 ~~~~-~~~~e~~ 274 (296)
T PRK11189 264 ANNV-YNFVEHR 274 (296)
T ss_pred HhCC-chHHHHH
Confidence 8763 3444443
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.1e-06 Score=78.36 Aligned_cols=343 Identities=13% Similarity=0.065 Sum_probs=217.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHhc-cCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHh
Q 042598 135 SFFTDYFGRRKDFKAIHDFLVDN-KEVLG-PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCE 211 (503)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~ 211 (503)
-..-+-|-+.|.+++|.+++.+. ...|| +..|...-.+|...|+++++.+.-.+..+ +.|+ +..+.-=.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHHh
Confidence 34446678899999999999875 45677 88899999999999999998887776664 3554 3455556677788
Q ss_pred CCChhHHHH------HHHH-------------------------Hhc---CCCCCHHHHHHHHHHHHhc--------CC-
Q 042598 212 NGYASYAEK------LVKD-------------------------TAN---EIFPDDKICDLLIKGWCVD--------GK- 248 (503)
Q Consensus 212 ~g~~~~a~~------~~~~-------------------------~~~---~~~p~~~~~~~li~~~~~~--------g~- 248 (503)
.|++++|+. +++. ++. .+.|+....++....+... ++
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 888888754 3332 110 1224444333333332111 00
Q ss_pred ----HHHHHHHHHHHHHCCC---------------------CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 249 ----LDEAKRLAREMYRGGF---------------------ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 249 ----~~~a~~~~~~m~~~g~---------------------~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
..++.+.+..-...|. ..|... ..+..+++-.|-++-..+....|..-|+..+.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1112111111111110 011111 12222222222222222224566666666665
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHH
Q 042598 304 NGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383 (503)
Q Consensus 304 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 383 (503)
.... +...|--+-..|....+.++....|++..+.+.. |..+|..=.....-.+++++|..=|++.++.. +-+...|
T Consensus 355 l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred cCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 4432 2223666777899999999999999998876432 66777777777788899999999999988742 1245667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCccccc---chHHHh
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYR---VDPRYL 460 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~l~~~~ 460 (503)
..+..+.-+.+++++++..|++.+++ ++--+..|+-....+...+++++|.+.|+..++..-.-+....+ ++-.++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 77777777899999999999999876 56667899999999999999999999999988754221111111 122333
Q ss_pred cCchhhhcccccccHHHHHHHHHHh
Q 042598 461 KKPIAVKKGKKRETLPEKMARKRRR 485 (503)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~ 485 (503)
.-.+|.+....+..++.+..+-+++
T Consensus 511 l~~qwk~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 511 LVLQWKEDINQAENLLRKAIELDPK 535 (606)
T ss_pred hhhchhhhHHHHHHHHHHHHccCch
Confidence 3334777888888888877765544
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.3e-05 Score=74.08 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=76.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 042598 245 VDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR 324 (503)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 324 (503)
-.|+.-.|.+-|+..+...-.++. .|--+-.+|....+ .++..+.|+.....+. -|..+|..-.+.+.-.+
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~-------~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQ-------SEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhc-------cHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHH
Confidence 346666666666666654322222 14334444554444 3455555555544332 23334444444444445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 042598 325 RSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
++++|..=|++.+..... +...|..+-.+..+.++++++...|++.++ .++-....|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 566666666555543211 334444444444555566666666665555 233344555555555666666666666655
Q ss_pred HHHh
Q 042598 405 KMKT 408 (503)
Q Consensus 405 ~m~~ 408 (503)
...+
T Consensus 487 ~ai~ 490 (606)
T KOG0547|consen 487 KAIE 490 (606)
T ss_pred HHHh
Confidence 5443
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.6e-05 Score=75.12 Aligned_cols=263 Identities=15% Similarity=0.055 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+......-.+-+-..+++.+..++++...+. .++....+..=|.++.+.|+..+-..+=.++.+..+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 4444444445555555555555555555542 22333334444445555555554444444444444444555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC--CCC-CChhhHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN--GVP-RNVETFNVLI 317 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~--g~~-~~~~~~~~li 317 (503)
.|.-.|+..+|.+.|.+.... .|. ...|-..-..|+-.|. .++|...+...-+. |.. |. .| +-
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~E-------hdQAmaaY~tAarl~~G~hlP~--LY--lg 387 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGE-------HDQAMAAYFTAARLMPGCHLPS--LY--LG 387 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcch-------HHHHHHHHHHHHHhccCCcchH--HH--HH
Confidence 555555555555555554432 111 2234444444444433 33443333322211 110 11 11 11
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCC----CCHHHHHHHHHHH
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYA----IGKKDYYEFLTRL 390 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~----~~~~~~~~li~~~ 390 (503)
--|.+.+..+.|.+.|.+.... .| |...++-+--.....+.+.+|..+|+..+.. .+. --..+++.|-..|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 2344445555555555544332 22 3333333333334445555555555544321 000 1223344455555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 391 CGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
.+.+..++|+..+++.... .+.|..++.++.-.|...|+++.|.+.|.+.+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5555555555555554433 13445555555555555555555555555543
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.2e-05 Score=75.51 Aligned_cols=283 Identities=14% Similarity=0.005 Sum_probs=212.1
Q ss_pred CCCCHHHHHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHH
Q 042598 127 FSHTDETLSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRL 204 (503)
Q Consensus 127 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ 204 (503)
...+......-.+-|-...++.+...+.+.. ..++....+..=|.++...|+..+-..+=.+|.+. .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhh
Confidence 3344555555556667778888887777654 22456667777778999999998888888888874 3446788999
Q ss_pred HHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcC
Q 042598 205 VVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG--GFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 205 ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g 282 (503)
+---|.-.|+..+|.+.|.+...--.-=...|-.....|+-.|.-|+|+..|...-+. |.. -+..|.. --|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlg--mey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLG--MEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHH--HHHHHhc
Confidence 9888888899999999999864422233467888899999999999999999877653 211 1222322 3355555
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHH
Q 042598 283 RKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW--GCHP----NETTFLVLIKSLY 356 (503)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~li~~~~ 356 (503)
. .+-|.+.|.+..... +-|....+-+-......+.+.+|..+|+.-... .+.+ -..+++.|-.+|.
T Consensus 395 n-------~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 395 N-------LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred c-------HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 5 789999998766533 457788888888888899999999999987532 1221 2346888999999
Q ss_pred HhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042598 357 QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425 (503)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (503)
+.+.+++|...+++.+... .-+..++.++.-.|...|+++.|.+.|.+..- +.||-.+-..++..+
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999999999998853 45888999999999999999999999998875 488877766666633
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=6.9e-05 Score=72.67 Aligned_cols=272 Identities=10% Similarity=-0.059 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHH-hHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD-SLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
...|..+...+...|+.+.+.+.+....+......+.. ........+...|++++|.+++++.....+.|...+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 34556666677777888888777777665312222321 22222345678899999999999886655455555553 22
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHH
Q 042598 242 GWCV----DGKLDEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVL 316 (503)
Q Consensus 242 ~~~~----~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 316 (503)
.+.. .+..+.+.+.+.. ..+..|+ ......+...+...|+ +++|...+++..+.. +.+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~-------~~~A~~~~~~al~~~-p~~~~~~~~l 154 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ-------YDRAEEAARRALELN-PDDAWAVHAV 154 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 3333 3455555555544 2222343 3344455567777887 889999999988765 3456778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHH
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEWGC-HPNE--TTFLVLIKSLYQAARVGEGDEMIDRMKSAGY-AIGKKDY-Y--EFLTR 389 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~-~--~li~~ 389 (503)
...|...|++++|...+++..+... .|+. ..|..+...+...|++++|..+++....... .+..... + .++..
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 8999999999999999998876432 2332 3455778889999999999999999865322 1222211 1 23333
Q ss_pred HHccCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 390 LCGIERIEQAMSV--FEKMKTDGH--NPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 390 ~~~~g~~~~A~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+...|..+.+.++ ......... ............++...|+.++|..+++.+....
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4445544444333 221111100 1111222356677889999999999999987643
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.4e-05 Score=71.49 Aligned_cols=270 Identities=12% Similarity=0.005 Sum_probs=184.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHh-HHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHH
Q 042598 159 EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS-LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICD 237 (503)
Q Consensus 159 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~ 237 (503)
.+-|+.....+...+...|+.++|+..|++... +.|+..+ .....-.+.+.|+.++...+...+-....-....|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 356788888999999999999999999988764 2444322 222223346788888877777766543333444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLI 317 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 317 (503)
.-........+++.|+.+-++.++.. +-+...|-.--..+...|+ .++|.--|....... +-+...|.-++
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R-------~~~A~IaFR~Aq~La-p~rL~~Y~GL~ 375 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER-------HTQAVIAFRTAQMLA-PYRLEIYRGLF 375 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc-------hHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 44445556678888888888877542 1122333222234445555 778888887766533 24778999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HHhCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI-KSL-YQAARVGEGDEMIDRMKSAGYAIGK-KDYYEFLTRLCGIE 394 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~-~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g 394 (503)
..|.-.|++.+|.-+-++..+. ..-+..+.+.+- ..| -....-++|..+++.-.+ +.|+- ...+.+...+...|
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhC
Confidence 9999999999988776654332 122444444331 122 223345788888887666 44553 45677778888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 395 RIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
..+++..+++..... .||....+.|...+...+.+++|.+.|...+..+
T Consensus 453 ~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999999999988764 7999999999999999999999999999888765
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=1.3e-06 Score=80.87 Aligned_cols=248 Identities=11% Similarity=0.048 Sum_probs=128.0
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAK 253 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 253 (503)
.-.|.+..++.-.+ .... .-..+......+.+++...|+.+.++ .++..+-.|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 33466666654444 2211 11112334445556666666655432 3333333455555544444333323444444
Q ss_pred HHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 042598 254 RLAREMYRGGFELGTVAY-NCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL 332 (503)
Q Consensus 254 ~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 332 (503)
.-+++....+...+..++ ......+...|+ +++|.+++... .+.......+..|.+.++++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~-------~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGD-------YEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCH-------HHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCC-------HHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 444333322222122222 222223334444 66666665432 2444555667777777788888777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 333 FYRMGEWGCHPNETTFLVLIKSLYQ----AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++++..+
T Consensus 154 l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77776642 23 444445554443 2357778888877655 3456777777777777778888888887777665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHC
Q 042598 409 DGHNPDSETYDLLMTKWCAHNRV-DKANALFDEAVRN 444 (503)
Q Consensus 409 ~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 444 (503)
.+ +-|..+...+|.+....|+. +.+.+++.++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 42 33555666666666666666 5566677776653
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=0.00022 Score=66.23 Aligned_cols=321 Identities=10% Similarity=-0.018 Sum_probs=216.5
Q ss_pred CCHHHHHHHHccC-CchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHH---HHHHHH
Q 042598 95 PTPSLVQSTLNFS-PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPK---TLASCI 170 (503)
Q Consensus 95 p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~li 170 (503)
|....|..+...+ ......+.+.+-.+....-++-+......+.+.+...|+.+++...|++... .|+. ......
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-ANPDNVEAMDLYA 273 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-CChhhhhhHHHHH
Confidence 3444444444332 1223455566666666567788889999999999999999999999987643 2322 222223
Q ss_pred HHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 042598 171 DRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLD 250 (503)
Q Consensus 171 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 250 (503)
..+.+.|+.++...+-..+-.. .+.+...|-.-........+++.|+.+-++..+.-..+...|-.=-..+...|+.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH
Confidence 3356788888888877777642 22344445555555667788999998888775544455566655556677889999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHH-ccCCHHH
Q 042598 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLI-SNLC-KIRRSED 328 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~ 328 (503)
+|.-.|+..+... +-+...|.-|+.+|...|+.+++ .-.|..+++.|.. +..+.+.+- ..+. .-..-++
T Consensus 352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA---~~~An~~~~~~~~-----sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEA---NALANWTIRLFQN-----SARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHH---HHHHHHHHHHhhc-----chhhhhhhcceeeccCchhHHH
Confidence 9999999887642 34788999999999999984432 2233344444432 333433331 1222 1223477
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 329 AIKLFYRMGEWGCHPNE-TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 329 A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
|..++++-.. +.|+- -..+.+...|...|..+++..+++.... ..||....+.|-+.+...+.+.+|++.|....
T Consensus 423 AKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8888887655 35553 4556677888999999999999998887 57899999999999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 408 TDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 408 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
+. .|+ -+.+++=++.|.+..-.||
T Consensus 499 r~--dP~----------------~~~sl~Gl~~lEK~~~~~D 522 (564)
T KOG1174|consen 499 RQ--DPK----------------SKRTLRGLRLLEKSDDESD 522 (564)
T ss_pred hc--Ccc----------------chHHHHHHHHHHhccCCCC
Confidence 54 443 2455555666666544444
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.63 E-value=6.1e-05 Score=64.58 Aligned_cols=24 Identities=17% Similarity=-0.040 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 042598 235 ICDLLIKGWCVDGKLDEAKRLARE 258 (503)
Q Consensus 235 ~~~~li~~~~~~g~~~~a~~~~~~ 258 (503)
+|..+-..|-+.|+.+.|.+-|++
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHH
Confidence 333333333333333333333333
No 78
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=1.4e-05 Score=84.32 Aligned_cols=226 Identities=11% Similarity=0.090 Sum_probs=174.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcC---HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC
Q 042598 231 PDDKICDLLIKGWCVDGKLDEAKRLAREMYRG-GFELG---TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV 306 (503)
Q Consensus 231 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~---~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~ 306 (503)
-+...|-..|......++.++|.++.++.... ++.-. ...|.++++.-..-|. -+...++|++..+..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~-------eesl~kVFeRAcqyc- 1527 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT-------EESLKKVFERACQYC- 1527 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc-------HHHHHHHHHHHHHhc-
Confidence 34577888889999999999999999988753 22211 2345555555444453 567888998887631
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC---HHHH
Q 042598 307 PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG---KKDY 383 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~ 383 (503)
-.-..|..|...|.+.+..++|-++|+.|.+. +.-....|...+..+.+.++-+.|..++++..+. .|. ....
T Consensus 1528 -d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1528 -DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFI 1603 (1710)
T ss_pred -chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHH
Confidence 23457889999999999999999999999876 2246678889999999999999999999998884 333 4455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc--ccccchHHHhc
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP--KEYRVDPRYLK 461 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~ 461 (503)
.-.+..-.++|+.+.+..+|+..... .+.-...|+..|..=.++|+.+.+..+|++....++.|-. ..|...+.|-+
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 56677778899999999999998855 3557789999999999999999999999999999987765 45566777777
Q ss_pred Cchhhhcc
Q 042598 462 KPIAVKKG 469 (503)
Q Consensus 462 ~~~~~~~~ 469 (503)
..++++..
T Consensus 1683 ~~Gde~~v 1690 (1710)
T KOG1070|consen 1683 SHGDEKNV 1690 (1710)
T ss_pred hcCchhhH
Confidence 65444443
No 79
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=0.00019 Score=67.79 Aligned_cols=267 Identities=12% Similarity=0.033 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
...|--....=...+++..|..+|+.... +-..+...|--.+.+=.++..+..|..+++....-++.-...|.-.+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33343333333445666677777777665 3345666666666666677777777777776655443334455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK 322 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 322 (503)
=-..|++..|.++|+...+ ..||...|++.|+.=.+... ++.|..+++...-. .|++.+|--....=.+
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyke-------ieraR~IYerfV~~--HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKE-------IERARSIYERFVLV--HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhH-------HHHHHHHHHHHhee--cccHHHHHHHHHHHHh
Confidence 5666778888888877665 47788888887777666655 67777777776543 2777777777777777
Q ss_pred cCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCC---
Q 042598 323 IRRSEDAIKLFYRMGEW-GC-HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG--KKDYYEFLTRLCGIER--- 395 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~-g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~--- 395 (503)
+|....|..+|....+. |- .-+...|++...-=.+...++.|..+|+..++. ++-+ ...|..++..--+-|+
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhh
Confidence 78887777777766553 21 112233444444344566777788888877773 2222 3444444443333444
Q ss_pred HHHHHHH-----HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 396 IEQAMSV-----FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 396 ~~~A~~~-----~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
++++.-- ++.+.+.+ +-|-.+|--.+..-...|+.+...++|++.+..
T Consensus 299 IEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 3333321 33333332 446677777777777778888888888887754
No 80
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=0.0002 Score=68.76 Aligned_cols=362 Identities=10% Similarity=0.088 Sum_probs=210.9
Q ss_pred CHHHHHHHHcc-CCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC-CCCHHHHHHHHHHH
Q 042598 96 TPSLVQSTLNF-SPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE-VLGPKTLASCIDRL 173 (503)
Q Consensus 96 ~~~~~~~~l~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~ 173 (503)
+...|..+++- ..+..+.+...++.+.. -++.+...|..-|..-.+.++++.+..+|.++-. ..+...|..-|+--
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 56777777753 33456788888888875 4666778899999999999999999999998743 46788888777533
Q ss_pred HH-cCChhH----HHHHHHHhHHhcCCCCC-HHhHHHHHHH---------HHhCCChhHHHHHHHHHhcC-C------CC
Q 042598 174 VR-AGRPTQ----VLGFFERMERDYGFKRD-KDSLRLVVEK---------LCENGYASYAEKLVKDTANE-I------FP 231 (503)
Q Consensus 174 ~~-~g~~~~----A~~~f~~m~~~~~~~~~-~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~-~------~p 231 (503)
-+ .|+... ..+.|+-..+.-|+.+- -..|+..+.- |.++.+++...++++++... + -.
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 22 233332 33445554443354332 2335544432 33444566666677665321 0 01
Q ss_pred CHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHH--CCCCcCHHH---------------HHHHH------------
Q 042598 232 DDKICDLLIKGW-------CVDGKLDEAKRLAREMYR--GGFELGTVA---------------YNCIL------------ 275 (503)
Q Consensus 232 ~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~g~~~~~~~---------------~~~li------------ 275 (503)
|-..|..=|+.. -+...+..|.++++++.. .|+.....+ |-.+|
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 111121111111 112234445555554442 222111111 21111
Q ss_pred -------------------------------------HHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 042598 276 -------------------------------------DCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLIS 318 (503)
Q Consensus 276 -------------------------------------~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 318 (503)
+.+...|+..++...-+++.++++.....-...+..+|..+.+
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~ 336 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD 336 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222334444444444555555555443222223333333322
Q ss_pred HHH---ccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 042598 319 NLC---KIRRSEDAIKLFYRMGEW-GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI-GKKDYYEFLTRLCGI 393 (503)
Q Consensus 319 ~~~---~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 393 (503)
-=- .-...+...+.++++... .+.|+ .+|...|....+..-+..|..+|.++.+.+..+ ++..+++++.-||.
T Consensus 337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 111 111355566667666544 34444 678888998889999999999999999987766 88899999998886
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc--ccccchHHHhcC
Q 042598 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP--KEYRVDPRYLKK 462 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~ 462 (503)
++.+-|.++|+--.++ +.-+..--...+.-+...|+-..|..+|++.+..++.++. ..|..++.+-..
T Consensus 415 kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 5788999999865433 1223344456777778888888899999999888666554 456556665554
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.55 E-value=0.00016 Score=62.04 Aligned_cols=197 Identities=11% Similarity=-0.010 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKR-DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGW 243 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~ 243 (503)
+...|--.|...|+...|.+-+++..+. .| +..+|..+...|.+.|..+.|.+-|++..+--+-+..+.|..-.-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 4456677899999999999999998864 44 4577888889999999999999999988765556778888888889
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 042598 244 CVDGKLDEAKRLAREMYRGGFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK 322 (503)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 322 (503)
|..|.+++|.+.|++....-.-+ -..+|..+.-+..+.|+ .+.|++.|.+-.+... -...+.-.+.....+
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-------~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~ 185 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-------FDQAEEYLKRALELDP-QFPPALLELARLHYK 185 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-------chhHHHHHHHHHHhCc-CCChHHHHHHHHHHh
Confidence 99999999999999888643222 24567777777777777 6677777777665432 223455566677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.|++-.|...++.....+. ++....-..|..--..|+.+.+-++=..+.+
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888888888877766654 6777777777777777777777766666655
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=5.4e-06 Score=76.73 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=71.9
Q ss_pred HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--cCCCCC
Q 042598 209 LCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK--LCRKKD 286 (503)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~ 286 (503)
+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .|.
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~--- 180 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGG--- 180 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTT---
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCc---
Confidence 34456666665555432 33445555556666666666666666666543 222 233333333332 122
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-hHHH
Q 042598 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARV-GEGD 365 (503)
Q Consensus 287 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~-~~a~ 365 (503)
+.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+. -|..|...++.+....|+. +.+.
T Consensus 181 --e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 181 --EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp --TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred --hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHH
Confidence 1144566666665442 234555555555566666666666666655443321 1334444555555555555 4455
Q ss_pred HHHHHHHH
Q 042598 366 EMIDRMKS 373 (503)
Q Consensus 366 ~~~~~m~~ 373 (503)
+++.++..
T Consensus 257 ~~l~qL~~ 264 (290)
T PF04733_consen 257 RYLSQLKQ 264 (290)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 55555544
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.50 E-value=0.0011 Score=65.26 Aligned_cols=330 Identities=11% Similarity=0.133 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcC---CChHHHHHHHHhccC------------CCCHHHHHHHHHHHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRR---KDFKAIHDFLVDNKE------------VLGPKTLASCIDRLVR 175 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~------------~~~~~~~~~li~~~~~ 175 (503)
++.-+.+.+.|.++..+..+..++...+.++-.. +-|+-...++++.+. +.++..-+..|..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5666777888887777777888888777765221 112333333333322 1344556677788888
Q ss_pred cCChhHHHHHHHHhHHhc-----CCCCCHHhHHHHHHHHHhCCChhH---HHHHHHHHhcCCCCCH--HHHHHHHHHHHh
Q 042598 176 AGRPTQVLGFFERMERDY-----GFKRDKDSLRLVVEKLCENGYASY---AEKLVKDTANEIFPDD--KICDLLIKGWCV 245 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~p~~--~~~~~li~~~~~ 245 (503)
.+++++|-+.+.....+. .-+-+-..|+-+.+..++.-+.-. ...+++.+.. ..+|. ..|++|.+.|.+
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~-rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR-RFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc-cCcHHHHHHHHHHHHHHHH
Confidence 999999988888776431 112344566666666666544333 2333333322 22443 579999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC----------------CCCCCCcHHHHHHHHHHHHhCC----
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR----------------KKDPFRLDSEAEKVLLDMEYNG---- 305 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------~~~~~~~~~~a~~~~~~m~~~g---- 305 (503)
.|.+++|..+|++.... ..++.-|+.+.++|+.-.. .++ ...++-...-|+.+...+
T Consensus 261 ~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed-~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED-DVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred hhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh-hhhHHHHHHHHHHHHhccchHH
Confidence 99999999999998764 4456667777777764311 000 001222233333332221
Q ss_pred -------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 306 -------VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN------ETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 306 -------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
-+-++..|..-+. +..|+..+-...|.+.... +.|- ...|..+...|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 1223444444333 2346777888888887664 3332 2457788888899999999999999988
Q ss_pred HcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----------CCCC------CHHHHHHHHHHHHhcCChH
Q 042598 373 SAGYAIG---KKDYYEFLTRLCGIERIEQAMSVFEKMKTD-----------GHNP------DSETYDLLMTKWCAHNRVD 432 (503)
Q Consensus 373 ~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~p------~~~~~~~li~~~~~~g~~~ 432 (503)
+...+-- ..+|....++-.+..+++.|+++.+..... +.++ +...|...++---..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7543321 345666666667778888998888765421 1111 2334666666666677888
Q ss_pred HHHHHHHHHHHCCCc
Q 042598 433 KANALFDEAVRNGVE 447 (503)
Q Consensus 433 ~A~~~~~~m~~~g~~ 447 (503)
....+|+++.+..+.
T Consensus 495 stk~vYdriidLria 509 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888876643
No 84
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.43 E-value=6.7e-07 Score=85.75 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=102.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 042598 340 GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET 417 (503)
Q Consensus 340 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (503)
+...+...+..+++.+....+++++..++...... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34446667777777777777777777777777664 2223344556788888888888888888877777788888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHHHHHhhhhhhhccccCc
Q 042598 418 YDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARKRRRLKQIRLSFVKKP 497 (503)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ki~~~~~~~~ 497 (503)
+|.||+.+.+.|++..|.++.-+|...+...++.|+...+..|.+- ....+.......+-......-+++|.+|+..|
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~~EE~kvrv~~Lrn~ 218 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY--SKEPKPFDDLEPKPDLDWEEERKVRVKYLRNP 218 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh--hcccccccccCCCCCCCchheEEeeeeeecCC
Confidence 8888888888888888888888877777666777776644444442 11111111111111122444566777777765
Q ss_pred h
Q 042598 498 K 498 (503)
Q Consensus 498 ~ 498 (503)
.
T Consensus 219 ~ 219 (429)
T PF10037_consen 219 Y 219 (429)
T ss_pred c
Confidence 4
No 85
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.42 E-value=4.5e-07 Score=54.52 Aligned_cols=35 Identities=46% Similarity=0.731 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (503)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37888999999999999999999999888888873
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.41 E-value=0.0018 Score=65.14 Aligned_cols=314 Identities=11% Similarity=0.053 Sum_probs=174.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhH
Q 042598 125 ANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSL 202 (503)
Q Consensus 125 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~ 202 (503)
..+..|...|..+.-++.++|+++.+-+.|++.- .......|+.+-..|..+|....|+.+.+.-... .-.|+..+-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchH
Confidence 4566788899999999999999999999988762 2345678888888999999988898888876533 111433332
Q ss_pred HHHHH-HHH-hCCChhHHHHH--------------------------------------------------HHHHhc--C
Q 042598 203 RLVVE-KLC-ENGYASYAEKL--------------------------------------------------VKDTAN--E 228 (503)
Q Consensus 203 ~~ll~-~~~-~~g~~~~a~~~--------------------------------------------------~~~~~~--~ 228 (503)
-.++. .|. +-+.+++++.+ +++..+ .
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 22222 222 22333333322 222211 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH--------
Q 042598 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLD-------- 300 (503)
Q Consensus 229 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~-------- 300 (503)
-.|++..| +---|+..++++.|.+...+..+.+-.-+...|..|.-.+...++..++...++.|..-|.+
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 12333333 22334556778888888888877655566677776666666666644444333333332222
Q ss_pred -----------------------HH-------------h----CCC----------------------------------
Q 042598 301 -----------------------ME-------------Y----NGV---------------------------------- 306 (503)
Q Consensus 301 -----------------------m~-------------~----~g~---------------------------------- 306 (503)
.+ . .|.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 00 0 000
Q ss_pred C-------CC------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 307 P-------RN------VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 307 ~-------~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
+ |+ ...|......+.+.+..++|...+.+.... ..-....|...-..+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0 00 011222223333344444444333333221 111223333333444555666666666666655
Q ss_pred cCCCCC-HHHHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 374 AGYAIG-KKDYYEFLTRLCGIERIEQAMS--VFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 374 ~g~~~~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+.|+ +...+++..++.+.|+-..|.. ++.++.+.+ +-+...|-.+-..+-+.|+.++|-+.|....+..
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 3333 3456667777777776666666 777777654 4466777777777777777777777777666553
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00017 Score=71.68 Aligned_cols=214 Identities=13% Similarity=0.075 Sum_probs=159.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 042598 203 RLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 203 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 282 (503)
..+...+...|-...|..+|+++. .|.-+|.+|+..|+.++|..+..+..+ -+||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~- 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP- 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh-
Confidence 445667778888888888888753 477888899999998899888887776 367888777776655443
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHh
Q 042598 283 RKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVG 362 (503)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 362 (503)
..+++|.++++....+ .-..+-....++++++++.+.|+.-.+.+ .--..||-..-.+..+.+++.
T Consensus 471 ------s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 471 ------SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred ------HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 3377888888765432 11111112234788899999888755432 224467777777888889999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 363 EGDEMIDRMKSAGYAIG-KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 363 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
.|.+.|..... ..|| ...||.+-.+|.+.|+-.+|...+++..+.. .-+...|...+....+-|.+++|++.+.++
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999988877 3444 5789999999999999999999999988776 556677888888888999999999999888
Q ss_pred HHC
Q 042598 442 VRN 444 (503)
Q Consensus 442 ~~~ 444 (503)
.+.
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 765
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=8.7e-05 Score=65.89 Aligned_cols=291 Identities=12% Similarity=0.072 Sum_probs=179.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHH-HHHH
Q 042598 132 ETLSFFTDYFGRRKDFKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRL-VVEK 208 (503)
Q Consensus 132 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~-ll~~ 208 (503)
.-+.+++..+.+..+++.|.+++...+. +.+....+.|-.+|-+..++..|-..++++... .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHH
Confidence 3455666666677788888888765543 236677888888888888899999999888764 455554432 2345
Q ss_pred HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCC
Q 042598 209 LCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWC--VDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKD 286 (503)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (503)
+-+.+.+.+|+++...|.+. ++...-..-+.+-. ..+++..+..+.++....| +..+.+..--...+.|+
T Consensus 88 LY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq--- 159 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ--- 159 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc---
Confidence 56788888888888887653 22222222222222 3577778888887765433 23333333333345555
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-------------CH------H-
Q 042598 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP-------------NE------T- 346 (503)
Q Consensus 287 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------------~~------~- 346 (503)
.+.|.+-|+...+-+---....||.-+..| +.|+++.|+++..++++.|++- |. .
T Consensus 160 ----yEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 160 ----YEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ----HHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 788888888766543334556777766544 5688899999999999888763 11 0
Q ss_pred -HHHHHHHH-------HHHhCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 042598 347 -TFLVLIKS-------LYQAARVGEGDEMIDRMKSA-GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET 417 (503)
Q Consensus 347 -t~~~li~~-------~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (503)
.-+.++.+ +.+.++++.|.+-+-.|--. .-..|+.|...+.-+=. .|++.+..+-++-+.+.. +-...|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHH
Confidence 11223332 35677777777777666332 23345555544322211 233333333333333321 334578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 042598 418 YDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
|..++-.||++.-++.|-.++-+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 99999999999999999888765
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.37 E-value=0.0027 Score=62.58 Aligned_cols=297 Identities=10% Similarity=0.082 Sum_probs=179.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHH
Q 042598 125 ANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRL 204 (503)
Q Consensus 125 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ 204 (503)
.+..|+...|..+=+++ +.++-++.+|+ ..|-.-+....+.|++......|+.......+......|..
T Consensus 75 k~~~~T~~~~~~vn~c~------er~lv~mHkmp-----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~l 143 (835)
T KOG2047|consen 75 KHLCPTDPAYESVNNCF------ERCLVFMHKMP-----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDL 143 (835)
T ss_pred hccCCCChHHHHHHHHH------HHHHHHHhcCC-----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHH
Confidence 34456666665554433 34444444443 46777777788899999999999887764344445567888
Q ss_pred HHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCcCHHHHHHHHHHH
Q 042598 205 VVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG------FELGTVAYNCILDCV 278 (503)
Q Consensus 205 ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~ 278 (503)
.+.-.-..|-++-+..+++...+ .+...-+--|..++..+++++|-+.+....... .+.+...|.-+-+..
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk---~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLK---VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHh---cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 88888888999899999888765 444557778888999999999999888876431 133445566666666
Q ss_pred HhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 279 SKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN--VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356 (503)
Q Consensus 279 ~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 356 (503)
++.-+... --....++..+... -+| ...|++|.+-|.+.|++++|.++|++-... ..+..-|+.+.++|+
T Consensus 221 s~~p~~~~----slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 221 SQNPDKVQ----SLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HhCcchhc----ccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 65533211 11233334333322 133 357899999999999999999999887654 223444555555554
Q ss_pred HhCC----------------------HhHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHH
Q 042598 357 QAAR----------------------VGEGDEMIDRMKSAGY-----------AIGKKDYYEFLTRLCGIERIEQAMSVF 403 (503)
Q Consensus 357 ~~~~----------------------~~~a~~~~~~m~~~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (503)
.-.. ++-...-|+.+...+. ..++..|..-+.. ..|+..+-...+
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHH
Confidence 3221 1122222333222110 1122223222222 234555666666
Q ss_pred HHHHhCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 042598 404 EKMKTDGHNPD------SETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446 (503)
Q Consensus 404 ~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 446 (503)
.+.... +.|- ...|..+..-|-..|+.+.|..+|++..+-.+
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 666543 2221 23577777777788888888888877765443
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00021 Score=71.19 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=133.0
Q ss_pred HHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh
Q 042598 136 FFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215 (503)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~ 215 (503)
.+...+...|-...|..++++. ..|.-+|.+|...|+..+|..+..+-.++ +||...|..+.+...+..-+
T Consensus 403 ~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChHHH
Confidence 3445555666666666666543 34667777777777777777766665544 57777777777777776777
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHH
Q 042598 216 SYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAE 295 (503)
Q Consensus 216 ~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~ 295 (503)
++|.++++....+ .-..+-......++++++.+-|+.-.+.. ..-..+|-.+-.+..+.++ +..|.
T Consensus 474 EkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek-------~q~av 539 (777)
T KOG1128|consen 474 EKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK-------EQAAV 539 (777)
T ss_pred HHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh-------hHHHH
Confidence 7777777664322 00011111122567777777777654432 2234455555555556655 66777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 296 KVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 296 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|..-+....+.|.+++|.+.+.++.+.
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7776655432 235567888888888888888888888877776633 3444555555567778888888877777653
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.34 E-value=0.00062 Score=72.52 Aligned_cols=240 Identities=12% Similarity=0.009 Sum_probs=178.9
Q ss_pred hhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 042598 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPD-----DKICDLLIKGWCVDGKLDEAK 253 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~ 253 (503)
.+.|.+.-..+... +.+...|-..|.-..+.++.++|.+++++....+.+. ...|.++++.-...|.-+...
T Consensus 1441 pesaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 33444444444432 4456778888888899999999999999886654332 346777777777778888999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 042598 254 RLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLF 333 (503)
Q Consensus 254 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (503)
++|++..+.. -.-.+|..|...|.+.++ .++|-++++.|.+.-- -....|...+..+.++++-+.|.+++
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek-------~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEK-------NDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHH
Confidence 9999998752 224578889999999887 7899999999987521 46678999999999999999999999
Q ss_pred HHHHHcCCCCC---HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 042598 334 YRMGEWGCHPN---ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 334 ~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (503)
.+..+. -|- .......+..-.+.|+.+.+..+|+.....- +--...|+..|++-.+.|+.+.+..+|+.....+
T Consensus 1588 ~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1588 KRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 987764 343 2233334445568899999999999988742 3356789999999999999999999999999887
Q ss_pred CCCCH--HHHHHHHHHHHhcCChHHH
Q 042598 411 HNPDS--ETYDLLMTKWCAHNRVDKA 434 (503)
Q Consensus 411 ~~p~~--~~~~~li~~~~~~g~~~~A 434 (503)
+.|-. ..|...+.-=-.+|+-+.+
T Consensus 1665 l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1665 LSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CChhHhHHHHHHHHHHHHhcCchhhH
Confidence 76643 3455555544455654433
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.34 E-value=0.004 Score=61.51 Aligned_cols=277 Identities=16% Similarity=0.107 Sum_probs=176.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHH------HHHHhCCChhHHHHHHHHHhcCCCCCHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVV------EKLCENGYASYAEKLVKDTANEIFPDDKI 235 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~p~~~~ 235 (503)
....|..+..++.-.|+...|..+.++..+.....|+...|.-.. ....+.|.+++|.+.+..-...+.-....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~ 221 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAF 221 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHH
Confidence 445677888888888999999999998887522346666654433 33457788888888877665544333344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHHhcCCCC----------------------------C
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCIL-DCVSKLCRKK----------------------------D 286 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~----------------------------~ 286 (503)
-.+-...+.+.+++++|..+|..+... .||..-|...+ .++++..+.. .
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN 299 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC
Confidence 455667778889999999999999876 56665554433 3333211100 0
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH----HcCC----------CCCH--HHHHH
Q 042598 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMG----EWGC----------HPNE--TTFLV 350 (503)
Q Consensus 287 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~----------~p~~--~t~~~ 350 (503)
.....+..-+++..+.+.|+++ ++..+..-|-.-...+-..++.-.+. ..|. .|+. .|+-.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 0011223334444455555542 23333333332222221122222221 1111 3444 34556
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042598 351 LIKSLYQAARVGEGDEMIDRMKSAGYAIGK-KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429 (503)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (503)
++..+-+.|+++.|..+++.... ..|+. ..|..=.+.+...|++++|..++++..+.. .+|...=.--..-..+++
T Consensus 377 laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 78888999999999999998876 34554 456666688999999999999999988654 456555445666677899
Q ss_pred ChHHHHHHHHHHHHCCC
Q 042598 430 RVDKANALFDEAVRNGV 446 (503)
Q Consensus 430 ~~~~A~~~~~~m~~~g~ 446 (503)
+.++|.++.....+.|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 99999999999998885
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.34 E-value=0.0008 Score=74.02 Aligned_cols=293 Identities=11% Similarity=-0.000 Sum_probs=166.3
Q ss_pred CCChHHHHHHHHhccC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCC-----CCCH--HhHHHHHHHHHhCC
Q 042598 144 RKDFKAIHDFLVDNKE---VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGF-----KRDK--DSLRLVVEKLCENG 213 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~--~~~~~ll~~~~~~g 213 (503)
.|+++.+..++...+. ..++.........+...|++++|..+++.......- .+.. .....+-..+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4455555555544421 112222333444556788999999988877543111 0111 11222334456899
Q ss_pred ChhHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCC
Q 042598 214 YASYAEKLVKDTANEIFP-D----DKICDLLIKGWCVDGKLDEAKRLAREMYRG----GF-ELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 214 ~~~~a~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~ 283 (503)
++++|...+++....... + ....+.+...+...|++++|...+++.... |- .....++..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 999999999886442211 1 134456666777899999999999887742 11 1112344555667777888
Q ss_pred CCCCCCcHHHHHHHHHHHHh----CCCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHH
Q 042598 284 KKDPFRLDSEAEKVLLDMEY----NGVP---RNVETFNVLISNLCKIRRSEDAIKLFYRMGEW--GCHPN--ETTFLVLI 352 (503)
Q Consensus 284 ~~~~~~~~~~a~~~~~~m~~----~g~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~li 352 (503)
+++|...+++... .+.. .....+..+...+...|++++|...+++.... ...+. ..++..+.
T Consensus 547 -------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 547 -------LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred -------HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 6677766665432 2211 12334555566677789999999999887542 11122 33444556
Q ss_pred HHHHHhCCHhHHHHHHHHHHHc--CCCCCHH--H--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 042598 353 KSLYQAARVGEGDEMIDRMKSA--GYAIGKK--D--YYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS---ETYDLLMT 423 (503)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~ 423 (503)
......|+.++|.+.+...... ....... . ....+..+...|+.+.|.+++............ ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 6778899999999998887542 1111100 0 011123344467777777776654432111110 11334555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 042598 424 KWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 424 ~~~~~g~~~~A~~~~~~m~~ 443 (503)
++...|+.++|...+++...
T Consensus 700 ~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66677777777777776654
No 94
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.2e-06 Score=52.51 Aligned_cols=33 Identities=36% Similarity=0.676 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777676665
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.30 E-value=0.0043 Score=61.31 Aligned_cols=159 Identities=7% Similarity=-0.097 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 042598 112 RAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLVRAGRPTQVLGFFERM 189 (503)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 189 (503)
+..+.+.+.+.+ +++-...|....--.+...|+-++|...+... +...+.++|..+--.+-...++++|++.|...
T Consensus 24 kkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 24 KKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344444444444 22222333333333344456667776666532 22346677777777777777888888888877
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCH
Q 042598 190 ERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG-FELGT 268 (503)
Q Consensus 190 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~ 268 (503)
... -+-|...|.-+--.=++.|+++.....-..+-....-....|.....++.-.|+...|..+.++..+.. ..|+.
T Consensus 102 l~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 102 LKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred Hhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCH
Confidence 642 123445565555555666666666555555444333445667777777777788888888888777654 24555
Q ss_pred HHHHHH
Q 042598 269 VAYNCI 274 (503)
Q Consensus 269 ~~~~~l 274 (503)
..|.-.
T Consensus 180 ~~~e~s 185 (700)
T KOG1156|consen 180 EDYEHS 185 (700)
T ss_pred HHHHHH
Confidence 555433
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0014 Score=67.70 Aligned_cols=119 Identities=17% Similarity=0.086 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHccCCchhHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHH-----HH
Q 042598 94 TPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANF--SHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPK-----TL 166 (503)
Q Consensus 94 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 166 (503)
+-++.+|..+|....... .++.+...+ .++ ..|+...+..++++...+-..+..+++++.-..++++ ..
T Consensus 949 R~D~~LW~~VL~e~n~~r---RqLiDqVv~-tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYR---RQLIDQVVQ-TALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred ccChHHHHHHHhccChHH---HHHHHHHHH-hcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 457888888885433222 345555544 232 4577888899999999999999999999875544433 33
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
|.||-.-.+. +..+..+..+++..- -.|+ +...+...+-+++|..+|++.
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdny--Da~~------ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNY--DAPD------IAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccC--Cchh------HHHHHhhhhHHHHHHHHHHHh
Confidence 4444443333 333444444444320 1122 223344455566666666543
No 97
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.28 E-value=1.3e-06 Score=52.00 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (503)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888777776
No 98
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0009 Score=61.08 Aligned_cols=207 Identities=12% Similarity=0.067 Sum_probs=140.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChh-hHHH
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE-TFNV 315 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ 315 (503)
-.++-.|.+.+++.+|..+..++.- ..|-......+ .+...|+.-...+.+.-|.+.|+-.-+.+..-|.+ --.+
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 3466678899999999998876531 12222222222 23344554444455778888888777766554433 3456
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccC
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY-YEFLTRLCGIE 394 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g 394 (503)
|...+.-..++++++-+++.+...=..-|..-|| +..+.+..|++.+|+++|-.+....++ |..+| ..|.++|.+++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 6677777788999999988887754444555554 678999999999999999887665554 44455 45678899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCccCccccc
Q 042598 395 RIEQAMSVFEKMKTDGHNPDSETYDLL-MTKWCAHNRVDKANALFDEAVRNGVEVKPKEYR 454 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 454 (503)
..+.|+.++-.+.. +.+..+.-.+ ..-|-+.+++--|-+.|+++...+ |++..|.
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWe 498 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWE 498 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccC
Confidence 99999998877652 2233443334 457888899888888888887654 6666664
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=0.00015 Score=65.67 Aligned_cols=184 Identities=11% Similarity=-0.042 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCH---
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK----DSLRLVVEKLCENGYASYAEKLVKDTANEIFPDD--- 233 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~--- 233 (503)
.....+-.+...+...|++++|...|+++... .|+. ..+..+..++.+.|++++|...++++.+..+.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 45667778888888999999999999988764 3332 4667778888899999999999998865322222
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC
Q 042598 234 KICDLLIKGWCVD--------GKLDEAKRLAREMYRGGFELGT-VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN 304 (503)
Q Consensus 234 ~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~ 304 (503)
.++..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... .. . .....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~-------------~---~~~~~-- 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY-------------L---RNRLA-- 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH-------------H---HHHHH--
Confidence 2344444455443 7788999999998865 3443 222221111 10 0 00000
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 305 GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG--CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 305 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
.....+...|.+.|++++|+..|++..+.. .......+..+..++.+.|++++|..+++.+...
T Consensus 167 ------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 ------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112245567889999999999999987752 1223567888999999999999999998888764
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.25 E-value=0.00025 Score=64.21 Aligned_cols=193 Identities=10% Similarity=-0.050 Sum_probs=128.1
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCH-HHH
Q 042598 197 RDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDD---KICDLLIKGWCVDGKLDEAKRLAREMYRGGFE-LGT-VAY 271 (503)
Q Consensus 197 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-~~~ 271 (503)
.....+..+...+.+.|++++|...|+++....+.+. .++..+..++...|++++|...++++.+..-. +.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4566777888889999999999999999866433332 46778889999999999999999999875311 111 234
Q ss_pred HHHHHHHHhc-CCCCCCCCcHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042598 272 NCILDCVSKL-CRKKDPFRLDSEAEKVLLDMEYNGVPRNV-ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFL 349 (503)
Q Consensus 272 ~~li~~~~~~-g~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 349 (503)
..+-.++.+. +......+..++|.+.|+.+.... |+. ..+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444444443 111001122678888888887643 332 22222211100 000 000 1112
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 350 VLIKSLYQAARVGEGDEMIDRMKSAG--YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
.+...+.+.|++++|...++...+.. -......+..+...+.+.|+.++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567899999999999999998852 1234578889999999999999999999988754
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0043 Score=60.63 Aligned_cols=123 Identities=10% Similarity=0.068 Sum_probs=81.9
Q ss_pred HHHHHHHHccCC-chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHH--
Q 042598 97 PSLVQSTLNFSP-EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRL-- 173 (503)
Q Consensus 97 ~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~-- 173 (503)
..++..+-.... ...+.|++..+.+.. +.+-|...+..=+-++...+.+++|+.+++..+......+|. +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~ 89 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCE 89 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHH
Confidence 455555544332 236778887777775 335666778888888888999999998877665311111111 23344
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
-+.+..++|+..++.... .|..+...=...+-+.|++++|+++|+.+.+
T Consensus 90 Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 478899999988884432 2444666666778889999999999998844
No 102
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=1.8e-06 Score=51.42 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 416 ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466677777777777777777777777666665
No 103
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.0026 Score=59.89 Aligned_cols=209 Identities=9% Similarity=-0.053 Sum_probs=136.2
Q ss_pred CCChHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHcC-ChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh--hHH
Q 042598 144 RKDFKAIHDFLVDNK-E-VLGPKTLASCIDRLVRAG-RPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA--SYA 218 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~-~-~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~--~~a 218 (503)
.+..++|..+..+.- . +-+..+|+.--..+...| ++++++..++.+.+. -+.+..+|+.---.+.+.|.. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhhHHH
Confidence 345566666665542 1 224456665555566666 578999999998864 233455676554445555653 677
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 042598 219 EKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVL 298 (503)
Q Consensus 219 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~ 298 (503)
+.+++.+.+.-..|..+|+...-.+.+.|+++++++.++++.+.+.. +...|+.....+.+.+....-....+++.+..
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 88888887766678899999999999999999999999999987633 55566665555555432111112245566666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042598 299 LDMEYNGVPRNVETFNVLISNLCKI----RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357 (503)
Q Consensus 299 ~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 357 (503)
....... +-|...|+-+...+... +...+|.+.+.+..+.++ .+......|+..|+.
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 5665543 35788898888888773 344668888777665432 255666777777764
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00041 Score=60.87 Aligned_cols=158 Identities=16% Similarity=0.081 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 042598 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVD 246 (503)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 246 (503)
..+-..+.-.|+-+.+..+...... ...-|....+.......+.|++..|+..|.+....-++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4445555666666666666665443 23345556666777777777777777777777666667777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH
Q 042598 247 GKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326 (503)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 326 (503)
|++++|..-|.+..+.-. -+...+|.+.-.|.-.|+ .+.|+.++..-...+. .|...-..+.-.....|++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd-------~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGD-------LEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCC-------HHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence 777777777777666421 133444555555555566 5677777666655432 3555556666666667777
Q ss_pred HHHHHHHHH
Q 042598 327 EDAIKLFYR 335 (503)
Q Consensus 327 ~~A~~l~~~ 335 (503)
++|.++-..
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 777666544
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0068 Score=59.30 Aligned_cols=296 Identities=15% Similarity=0.119 Sum_probs=174.5
Q ss_pred HHHH--hcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCC-------------------
Q 042598 138 TDYF--GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFK------------------- 196 (503)
Q Consensus 138 l~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~------------------- 196 (503)
=++| -+.+..++|...+.-.. +.|..+...-...+-+.|++++|+++|+.+.++ +..
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhH
Confidence 3455 46788899999888332 234446666667788999999999999999765 111
Q ss_pred ------C--CHHhHHHHH---HHHHhCCChhHHHHHHHHH--------hcCCCC------CHHH-HHHHHHHHHhcCCHH
Q 042598 197 ------R--DKDSLRLVV---EKLCENGYASYAEKLVKDT--------ANEIFP------DDKI-CDLLIKGWCVDGKLD 250 (503)
Q Consensus 197 ------~--~~~~~~~ll---~~~~~~g~~~~a~~~~~~~--------~~~~~p------~~~~-~~~li~~~~~~g~~~ 250 (503)
| ...+|..+. -.+...|++.+|+++++.. ..+..- +..+ -.-|...+-..|+-+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 0 012333333 3456789999999999986 111111 1111 122445566789999
Q ss_pred HHHHHHHHHHHCCCCcCHHH----HHHHH-----------------------------------------------HHHH
Q 042598 251 EAKRLAREMYRGGFELGTVA----YNCIL-----------------------------------------------DCVS 279 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~----~~~li-----------------------------------------------~~~~ 279 (503)
+|.++|....+.. .+|... -|.|+ ..|.
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988765 233211 11111 1111
Q ss_pred hcCC------------CCCCC-------------CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 042598 280 KLCR------------KKDPF-------------RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFY 334 (503)
Q Consensus 280 ~~g~------------~~~~~-------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 334 (503)
..++ ....+ ....++.+++...-+........+--+++......|+++.|++++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1100 00000 0012233333333222211223445566677778888888888888
Q ss_pred --------HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHccCCHHHHH
Q 042598 335 --------RMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAIGKK----DYYEFLTRLCGIERIEQAM 400 (503)
Q Consensus 335 --------~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~----~~~~li~~~~~~g~~~~A~ 400 (503)
.+.+.+..|-. ...+...+.+.++-+.|..++....+. .-.+... ++..+...-.+.|+.++|.
T Consensus 401 ~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 55555555543 444666677777777777777766552 1112222 2333333445578999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 401 SVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 401 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
.+++++.+.. ++|..+...++.+|++. +.+.|..+-+.
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999988753 67888888899999886 66777766554
No 106
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.002 Score=60.63 Aligned_cols=143 Identities=10% Similarity=-0.065 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCC-ChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENG-YASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
+++.+-..+...++.++|+.+.+++.+. .|+ ..+|+.--.++...| ++++++..++++...-+.+..+|+.--..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 3444444555667778888888877753 343 334554444444555 45677777766655444555556554444
Q ss_pred HHhcCCH--HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 042598 243 WCVDGKL--DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN 319 (503)
Q Consensus 243 ~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 319 (503)
+.+.|+. ++++.+++++.+.. .-+..+|+...-.+.+.|+ ++++.+.++++.+.+. .|...|+.....
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~-------~~eeL~~~~~~I~~d~-~N~sAW~~R~~v 185 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGG-------WEDELEYCHQLLEEDV-RNNSAWNQRYFV 185 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHCC-CchhHHHHHHHH
Confidence 4444442 44555555555432 2234455544444444444 4555555555555432 344445444333
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.18 E-value=0.0043 Score=68.31 Aligned_cols=264 Identities=12% Similarity=0.022 Sum_probs=160.2
Q ss_pred HHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCC-------CCH--HHHHHHHHH
Q 042598 172 RLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-------PDD--KICDLLIKG 242 (503)
Q Consensus 172 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------p~~--~~~~~li~~ 242 (503)
.....|+++.+..+++.+... ....+..........+...|++++|..++........ +.. .....+-..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345567888877777776432 1112222333444555678999999999887643211 111 122223344
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----CCC-CChhhH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGT----VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----GVP-RNVETF 313 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~ 313 (503)
+...|++++|...+++....--..+. ...+.+...+...|+ +++|...+.+.... |.. ....++
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~-------~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE-------LARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 56789999999999987763111121 234555556667777 77777777666532 111 112345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCC--CHHH
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEW----GCH--P-NETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAI--GKKD 382 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~--~~~~ 382 (503)
+.+...+...|++++|...+++..+. |.. + ....+..+...+...|++++|...+.+.... ...+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 56667788899999999999886542 221 1 2233445556677889999999999887653 1112 2334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHH-----HHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMKTDGH-NPDSETY-----DLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
+..+...+...|+.++|.+.+++.....- ......+ ...+..+...|+.+.|..++.....
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 44466677889999999999888753210 1111111 1122445668999999998777544
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00096 Score=59.48 Aligned_cols=311 Identities=15% Similarity=0.062 Sum_probs=199.9
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC-CCCHHHHHH-HHHHHHHcCChhHHHHHHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE-VLGPKTLAS-CIDRLVRAGRPTQVLGFFER 188 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~-li~~~~~~g~~~~A~~~f~~ 188 (503)
..+|.++...-.++ -+.+....+.+-.+|-+..++..|-+.+++.+. .|...-|.. -...+-+.+.+.+|+++...
T Consensus 26 y~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 26 YADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45666666555441 123677788888888999999999999998865 344444432 23456678999999999988
Q ss_pred hHHhcCCCCCHHhHHHHHHHH--HhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 042598 189 MERDYGFKRDKDSLRLVVEKL--CENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266 (503)
Q Consensus 189 m~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 266 (503)
|... ++...-..-+.+- -..+++..+..++++.... -+..+.+...-..-+.|+++.|.+-|+...+-|---
T Consensus 104 ~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 104 LLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred hcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8752 3322222222222 3567888888888887642 233344444444457899999999999988754333
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC-------------CChh---------------hHHHHHH
Q 042598 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP-------------RNVE---------------TFNVLIS 318 (503)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~-------------~~~~---------------~~~~li~ 318 (503)
....||..+..|.+ |+ .+.|.+...++.++|+. +|+. .+|.-..
T Consensus 178 pllAYniALaHy~~-~q-------yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 178 PLLAYNLALAHYSS-RQ-------YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred chhHHHHHHHHHhh-hh-------HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 45778888877665 45 78999999999998754 2211 1222233
Q ss_pred HHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 042598 319 NLCKIRRSEDAIKLFYRMGEW-GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIE 397 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 397 (503)
.+.+.|+++.|.+-+..|--. ....|.+|...+.-. -..+++.++.+-++.+.+.. +....||..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHh
Confidence 456778999999988888432 234577777655422 13455667777777777753 245689999999999999999
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc-CChHHHHHHHHH
Q 042598 398 QAMSVFEKMKTDGH-NPDSETYDLLMTKWCAH-NRVDKANALFDE 440 (503)
Q Consensus 398 ~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~ 440 (503)
.|..++.+-...-+ -.+...|+ |+.++.-. -..++|++-++.
T Consensus 328 lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 328 LAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHH
Confidence 99998876432211 11333343 33444332 345555554443
No 109
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.15 E-value=2.9e-06 Score=49.28 Aligned_cols=31 Identities=42% Similarity=0.687 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGC 341 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (503)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00062 Score=66.12 Aligned_cols=253 Identities=12% Similarity=0.044 Sum_probs=180.9
Q ss_pred HHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042598 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEA 252 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 252 (503)
+.+.|++.+|.-.|+...++ -+-+...|-.|-......++-..|+..+.+..+--+-|....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 46789999999999988764 2335788988888889999999999999888775556778888899999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----CCCCCCcHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHccCCH
Q 042598 253 KRLAREMYRGGFELGTVAYNCILDCVSKLCR-----KKDPFRLDSEAEKVLLDMEY-NGVPRNVETFNVLISNLCKIRRS 326 (503)
Q Consensus 253 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~ 326 (503)
...++.......+ |..+..+ ...++ .......+.+..++|-++.. .+..+|..++..|--.|.-.|.+
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHhCcc-----chhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999887654211 0000000 00000 00011224566666766654 45447777888888889999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHH
Q 042598 327 EDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK-KDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 327 ~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
++|.+.|+..... +| |..+||.|-..++...+.++|..-|.+.++ +.|+- .....|.-.|...|.+++|.+.|-
T Consensus 447 draiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 447 DRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999998874 45 568899999999999999999999999998 45553 233335567888999999999876
Q ss_pred HHH---hCC------CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 042598 405 KMK---TDG------HNPDSETYDLLMTKWCAHNRVDKANAL 437 (503)
Q Consensus 405 ~m~---~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~ 437 (503)
... +.+ ..++...|.+|=.++.-.++.|.+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 544 221 122345787777777777777655443
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.0016 Score=68.62 Aligned_cols=151 Identities=7% Similarity=0.057 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhH
Q 042598 234 KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETF 313 (503)
Q Consensus 234 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 313 (503)
..+-.+..+|-+.|+.+++..+|+++.+.. .-|..+.|.+...|... + +++|++++......
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d-------L~KA~~m~~KAV~~--------- 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D-------KEKAITYLKKAIYR--------- 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h-------HHHHHHHHHHHHHH---------
Confidence 345556666666677777777777766654 33556666666666665 4 56666665544331
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~ 392 (503)
|...+++.++.++|.++.... |+.. +.-.++.+.+... |..--..++-.+...|-.
T Consensus 179 ------~i~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 179 ------FIKKKQYVGIEEIWSKLVHYN--SDDF---------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred ------HHhhhcchHHHHHHHHHHhcC--cccc---------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 444556666666666665532 2211 1112222222222 222233455555666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 393 IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 777777777777777653 335555666666665
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0081 Score=62.35 Aligned_cols=207 Identities=11% Similarity=0.147 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcC-CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYG-FKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~l 239 (503)
.|+.-.+..+.++..++-+.+-+++++++.-... +.-+...-|.||-...+ -+...+.+..+++.+-..|++
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~i------ 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDI------ 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhH------
Confidence 4666667777777777777777777777754301 11122223333333333 344455666666554323332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN 319 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 319 (503)
...+...+-+++|..+|++. ..+....+.||+--.. ++.|.+.-+... ....|..+..+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i~~----------ldRA~efAe~~n------~p~vWsqlakA 1113 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENIGS----------LDRAYEFAERCN------EPAVWSQLAKA 1113 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHhhh----------HHHHHHHHHhhC------ChHHHHHHHHH
Confidence 33445566788888888764 4456666667655433 556666555543 33578888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
-.+.|.+.+|++-|-+. -|...|.-++..+.+.|.+++-.+++...++..-+|.+. +.||-+|++.+++.+.
T Consensus 1114 QL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHH
Confidence 88888888888777543 256778888888888888888888888777766666554 5677788888887776
Q ss_pred HHHH
Q 042598 400 MSVF 403 (503)
Q Consensus 400 ~~~~ 403 (503)
++++
T Consensus 1186 E~fi 1189 (1666)
T KOG0985|consen 1186 EEFI 1189 (1666)
T ss_pred HHHh
Confidence 6653
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00043 Score=60.75 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=127.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhC
Q 042598 135 SFFTDYFGRRKDFKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCEN 212 (503)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~ 212 (503)
...-..+.-.|+-+....++.+... ..|....+..+....+.|++..|+..|.+... .-++|...|+.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 4455566666777777777766533 45677888899999999999999999999886 5678899999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHH
Q 042598 213 GYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDS 292 (503)
Q Consensus 213 g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~ 292 (503)
|+++.|..-|.+..+-..-+...+|.|.-.|.-.|+.+.|..++......+ .-|..+-..+.-.....|+ ++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~-------~~ 219 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGD-------FR 219 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCC-------hH
Confidence 999999999998877555667788999999999999999999999988765 3466777778888888888 77
Q ss_pred HHHHHHHHHH
Q 042598 293 EAEKVLLDME 302 (503)
Q Consensus 293 ~a~~~~~~m~ 302 (503)
+|+++...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 8887765443
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0019 Score=56.91 Aligned_cols=177 Identities=11% Similarity=0.059 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 042598 112 RAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMER 191 (503)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 191 (503)
+..-++.+|+.. .....+......-...|...+++++|.+.+.. + -+......=+..+.+..+++-|.+..+.|.+
T Consensus 90 ~~~~~l~E~~a~-~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 90 SILASLYELVAD-STDGSNLIDLLLAAIIYMHDGDFDEALKALHL-G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHHh-hccchhHHHHHHhhHHhhcCCChHHHHHHHhc-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445567888887 34444445555556678999999999999987 3 2555555556677888999999999999997
Q ss_pred hcCCCCCHHhHHHHHHHHHh----CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 042598 192 DYGFKRDKDSLRLVVEKLCE----NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG 267 (503)
Q Consensus 192 ~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 267 (503)
- -+..+.+.|..++.+ .+.+.+|.-+|++|.++..|+..+.+-+..++...|++++|..++++..... .-+
T Consensus 166 i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 166 I----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred c----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 4 466777777777654 4678999999999999999999999999999999999999999999998765 335
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 268 TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
..+...+|-+-...|+. .+...+.+.++..
T Consensus 241 petL~Nliv~a~~~Gkd------~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKD------AEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCC------hHHHHHHHHHHHh
Confidence 66666666666666663 2334555555554
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.09 E-value=0.00087 Score=58.56 Aligned_cols=158 Identities=10% Similarity=0.078 Sum_probs=112.6
Q ss_pred HHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 042598 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL 249 (503)
Q Consensus 170 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 249 (503)
+..|...|+++.+....+.+.. |. ..+...++.+++...++.....-+.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 4567888888776544433221 11 0122356667777777776666667888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCV-SKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSED 328 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 328 (503)
++|...|++..+.. .-+...+..+..++ ...|+.. .++|.+++++..+.+. .+...+..+...+.+.|++++
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~-----~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHM-----TPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHH
Confidence 99999999888764 33566777777764 5656521 4789999998887663 477788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 042598 329 AIKLFYRMGEWGCHPNETTF 348 (503)
Q Consensus 329 A~~l~~~m~~~g~~p~~~t~ 348 (503)
|+..|+++.+.. .|+..-+
T Consensus 163 Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 163 AIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHhhC-CCCccHH
Confidence 999999988763 4454444
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.06 E-value=0.00086 Score=70.49 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHh-HHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS-LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~l 239 (503)
.+...+..|+..|...+++++|.++.+.-.+. .|+... |-.+-..+.+.++.+++..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh----------------hh
Confidence 35567777788777788888888777755543 344322 22222245555554444333 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN 319 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 319 (503)
+.......++..+..++..|.+.+ -+...+-.+..+|-+.|+ .+++..+++++.+.. +-|....|.+...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~-------~~ka~~~yer~L~~D-~~n~~aLNn~AY~ 159 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNE-------NKKLKGVWERLVKAD-RDNPEIVKKLATS 159 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 333334444444444444454432 233456666777777766 667777777777665 4567777777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
|... +.++|++++.+.... +...+++.++.++|.++.... |+ +++.-
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f 206 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFF 206 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHH
Confidence 7777 777777777665443 555667777777777776632 22 23333
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 042598 400 MSVFEKMKTD-GHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 400 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 447 (503)
.++.+.+... |...-..++-.+...|-..++++++..+++..++..-+
T Consensus 207 ~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 207 LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 3333444322 34455677788888999999999999999999987533
No 117
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.06 E-value=0.00065 Score=67.62 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHH
Q 042598 135 SFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQV 182 (503)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 182 (503)
...|.+|.....|+++..+.+-.+.+.-...-.+.+.++...|+-++|
T Consensus 561 e~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka 608 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKA 608 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhh
Confidence 456777878888888888777665532222333444444445554444
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.04 E-value=0.00033 Score=61.19 Aligned_cols=120 Identities=9% Similarity=0.009 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCC--HHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR-LCGIER--IEQA 399 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A 399 (503)
.++.++++..+++..+.+ ..|...|..+...|...|++++|...|+...+.. .-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655543 3356666667777777777777777777766643 2244555555554 345555 4777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 400 MSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.+++++..+.+ +-+...+..+...+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777776652 3355666667777777777777777777776654
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0079 Score=53.07 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHH
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVL 316 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 316 (503)
..-...|+..|++++|++.... |...+....+. ..+.+..+ ++-|++.++.|.+- -+..|.+-+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~V--qI~lk~~r-------~d~A~~~lk~mq~i---ded~tLtQL 175 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHL----GENLEAAALNV--QILLKMHR-------FDLAEKELKKMQQI---DEDATLTQL 175 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHH--HHHHHHHH-------HHHHHHHHHHHHcc---chHHHHHHH
Confidence 3344456677777777776654 11222222222 22333333 56777777777652 344555545
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 317 ISNLCK----IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 317 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
.+++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++........ +..+...+|-+-..
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 444433 45567777777777554 5667777777777777777777777777777765433 23333333333223
Q ss_pred cC-CHHHHHHHHHHHHh
Q 042598 393 IE-RIEQAMSVFEKMKT 408 (503)
Q Consensus 393 ~g-~~~~A~~~~~~m~~ 408 (503)
.| +.+...+.+.+++.
T Consensus 254 ~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKL 270 (299)
T ss_pred hCCChHHHHHHHHHHHh
Confidence 33 33444455555553
No 120
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.04 E-value=9.9e-05 Score=55.84 Aligned_cols=73 Identities=14% Similarity=0.329 Sum_probs=34.5
Q ss_pred HHHhCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042598 355 LYQAARVGEGDEMIDRMKSAGY-AIGKKDYYEFLTRLCGIE--------RIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425 (503)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (503)
|...+++.....+|+.+++.|+ .|+..+|+.++++.++.. ++-+.+.++++|...+++|+..||+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444 344444444444433321 2334455555666555666666666666555
Q ss_pred Hh
Q 042598 426 CA 427 (503)
Q Consensus 426 ~~ 427 (503)
.+
T Consensus 115 lk 116 (120)
T PF08579_consen 115 LK 116 (120)
T ss_pred HH
Confidence 43
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.0004 Score=69.92 Aligned_cols=239 Identities=15% Similarity=0.067 Sum_probs=125.5
Q ss_pred CHHHHHHHHH--HHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc--C-------C-
Q 042598 162 GPKTLASCID--RLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN--E-------I- 229 (503)
Q Consensus 162 ~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-------~- 229 (503)
|..|-.++++ .|...|+.+.|.+-.+-++ +...|..|.+.|.+..+.|-|.-.+-.|.. + .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4455555543 3455566666655554443 335566666666666666655555554422 1 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC
Q 042598 230 FPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN 309 (503)
Q Consensus 230 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~ 309 (503)
.++ .+=..+...-...|.+++|+.+|++.++. ..|=..|-..|. +++|.++-+.-.+-. =
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~-------w~eA~eiAE~~DRiH---L 857 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGM-------WSEAFEIAETKDRIH---L 857 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhccc-------HHHHHHHHhhcccee---h
Confidence 121 11122222233556677777777665542 222223333444 555555543221110 1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMG----------EWG---------CHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~----------~~g---------~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
-.||.....-+-..++.+.|++.|++-. .+. -.-|...|..--...-..|++|.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1234444444444555555555554321 110 011333344444444566777777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 371 MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 371 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
.++ |.++++..|-.|+.++|-++-++- -|....-.|...|-..|++.+|..+|-+..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 554 566777777888888888776653 355556667778888888888877776543
No 122
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.01 E-value=6.1e-06 Score=47.86 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.007 Score=58.62 Aligned_cols=344 Identities=14% Similarity=0.147 Sum_probs=184.0
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHhc-c-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHH
Q 042598 128 SHTDETLSFFTDYFGRRKDFKAIHDFLVDN-K-EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLV 205 (503)
Q Consensus 128 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~l 205 (503)
+-|..+|+.+|+-+... ..+++.+.++++ + ++..+..|..-|.+-.+..+++..+++|.+.... ..+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHHH
Confidence 56889999999988776 889999999987 3 3557889999999999999999999999998875 4567778777
Q ss_pred HHHHHh-CCChhHH----HHHHHHHhcCCCCCH---HHHHHHH---HH------HHhcCCHHHHHHHHHHHHHCCCCc--
Q 042598 206 VEKLCE-NGYASYA----EKLVKDTANEIFPDD---KICDLLI---KG------WCVDGKLDEAKRLAREMYRGGFEL-- 266 (503)
Q Consensus 206 l~~~~~-~g~~~~a----~~~~~~~~~~~~p~~---~~~~~li---~~------~~~~g~~~~a~~~~~~m~~~g~~~-- 266 (503)
|+---+ .|+...+ .+-|+-....+..|. ..|+..+ .+ |....+++...++|+++...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764433 2333332 222332222222232 2333333 22 333345566777788777532111
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh--CCCCCChhh---------------HHHHHH-------
Q 042598 267 ----GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY--NGVPRNVET---------------FNVLIS------- 318 (503)
Q Consensus 267 ----~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~---------------~~~li~------- 318 (503)
|-..|-.=|+-.....-..+-...+..|.++++++.. +|...+..+ |-..|.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 1111211111111000000000113344444444432 122211111 211111
Q ss_pred ---------------------HH---------------------HccCC-------HHHHHHHHHHHHHcCCCCCHHHHH
Q 042598 319 ---------------------NL---------------------CKIRR-------SEDAIKLFYRMGEWGCHPNETTFL 349 (503)
Q Consensus 319 ---------------------~~---------------------~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~ 349 (503)
.+ ...|+ .+++..+++...+.-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111 122333333222211111222222
Q ss_pred HHHHHHHHhC---CHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 042598 350 VLIKSLYQAA---RVGEGDEMIDRMKSA-GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNP-DSETYDLLMTK 424 (503)
Q Consensus 350 ~li~~~~~~~---~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~ 424 (503)
.+...--..- ..+...+++++++.. .+.|+ .+|..+|+.-.+..-+..|..+|.+..+.+..+ ++.++++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 2221111111 234455555555553 33333 467888888888889999999999999888777 78889999998
Q ss_pred HHhcCChHHHHHHHHHHHHCCCccCccccc-chHHHhcCchhhhcccccccHHHHHHHH
Q 042598 425 WCAHNRVDKANALFDEAVRNGVEVKPKEYR-VDPRYLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
||. ++.+-|..+|+-=++.- +|...|. ..+.++..- +....+..+.|+..++
T Consensus 412 ~cs-kD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~l---Ndd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHL---NDDNNARALFERVLTS 464 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHh---CcchhHHHHHHHHHhc
Confidence 886 67799999998754431 2333333 345555542 2333344455554444
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.0058 Score=63.66 Aligned_cols=134 Identities=7% Similarity=-0.005 Sum_probs=81.0
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHH
Q 042598 196 KRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG-TVAYNCI 274 (503)
Q Consensus 196 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l 274 (503)
..++..+-.|.....+.|..++|+.+++....-.+-+......+...+.+.+++++|+..+++.... .|+ ......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 3446666666666666677777766666665544444555666666666666666666666666654 333 3444555
Q ss_pred HHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 275 LDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 275 i~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
-.++.+.|+ +++|..+|++....+ +-+..++...-.++...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~-------~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQ-------SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcc-------hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555556665 566666666666522 233556666666666666666666666666543
No 125
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.96 E-value=0.00017 Score=54.61 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=69.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhC--------CHhHHHHHHHHHHHcCCCCCHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGC-HPNETTFLVLIKSLYQAA--------RVGEGDEMIDRMKSAGYAIGKKD 382 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~ 382 (503)
|-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556677777999999999999999999 999999999999987654 24467899999999999999999
Q ss_pred HHHHHHHHHc
Q 042598 383 YYEFLTRLCG 392 (503)
Q Consensus 383 ~~~li~~~~~ 392 (503)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 126
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.96 E-value=0.00018 Score=69.39 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=76.1
Q ss_pred HHHHhHHhcC--CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042598 185 FFERMERDYG--FKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN---EIFPDDKICDLLIKGWCVDGKLDEAKRLAREM 259 (503)
Q Consensus 185 ~f~~m~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 259 (503)
++..|.+.++ ...+......+++.+....+++.+..++-+... ....-..|..++|+.|.+.|..++++.++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444444322 234555566666666666666666666655533 11122233446666666666666666666666
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 042598 260 YRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI 323 (503)
Q Consensus 260 ~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 323 (503)
...|+-||..++|.||+.+.+.|+ +..|.++...|..++...+..|+.-.+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~-------~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGN-------YKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhccc-------HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666 566666666666555555555555555554443
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.96 E-value=0.0014 Score=65.26 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=134.0
Q ss_pred HHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 042598 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL 249 (503)
Q Consensus 170 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 249 (503)
|.+-.....+.+|+.+++.+..+ +.-..-|..+..-|+..|+++.|+++|.+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccH
Confidence 34445667788888888888764 233344677778888999999999888653 2466678889999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHH
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDA 329 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 329 (503)
+.|.++-.+.. |-......|-+-..-+-+.|+ +.+|++++-.+.. ||. -|..|-+.|..++.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgk-------f~eaeqlyiti~~----p~~-----aiqmydk~~~~ddm 869 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGK-------FAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDM 869 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc-------hhhhhheeEEccC----chH-----HHHHHHhhCcchHH
Confidence 99988876654 323344555555555555666 6677777754443 443 46788888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 042598 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 330 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
+++..+-.... -..|-..+..-+-..|++..|++-|-+..+ |.+-+.+|-..+.|++|.++-+
T Consensus 870 irlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 870 IRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence 88877643221 124555666777788899888887765433 6677788888888888887754
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.001 Score=64.76 Aligned_cols=221 Identities=13% Similarity=-0.012 Sum_probs=165.8
Q ss_pred HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCC
Q 042598 209 LCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF 288 (503)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~ 288 (503)
+.+.|++.+|.-.|+.....-+-+...|--|--.....++-..|+..+.+..+.. .-+....-+|.-.|...|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~----- 368 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL----- 368 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh-----
Confidence 4688999999999998877666778899999999999999999999999988753 2345667777777777765
Q ss_pred CcHHHHHHHHHHHHhCCCC--------CChhhHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhC
Q 042598 289 RLDSEAEKVLLDMEYNGVP--------RNVETFNVLISNLCKIRRSEDAIKLFYRMGE-WGCHPNETTFLVLIKSLYQAA 359 (503)
Q Consensus 289 ~~~~~a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~~ 359 (503)
-.+|.+.++.......+ .+...-+. ..+.......+..++|-++.. .+..+|...+..|--.|.-.|
T Consensus 369 --q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 369 --QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred --HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 56888888887653311 01110000 122233345567777777754 454566667777777788899
Q ss_pred CHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 042598 360 RVGEGDEMIDRMKSAGYAI-GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS-ETYDLLMTKWCAHNRVDKANAL 437 (503)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~ 437 (503)
+++.|...|+.++. ++| |..+||-|-..++...+.++|+.-|.+..+. +|+. .++--|.-+|...|.+++|.+.
T Consensus 445 efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999988 344 5678999999999999999999999999875 7765 3555677889999999999988
Q ss_pred HHHHHH
Q 042598 438 FDEAVR 443 (503)
Q Consensus 438 ~~~m~~ 443 (503)
|-+.+.
T Consensus 521 lL~AL~ 526 (579)
T KOG1125|consen 521 LLEALS 526 (579)
T ss_pred HHHHHH
Confidence 876554
No 129
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.016 Score=53.19 Aligned_cols=313 Identities=8% Similarity=-0.004 Sum_probs=169.4
Q ss_pred chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCC--------------CHH----------
Q 042598 109 EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVL--------------GPK---------- 164 (503)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~---------- 164 (503)
+.-+.|+..+..+.. .. .++...+-.+...+--.|.+.+|..+..+....| |..
T Consensus 71 gdY~~Al~~Y~~~~~-~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMN-KD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred ccHHHHHHHHHHHhc-cC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 346788888888776 22 2444444444444444566666666655543210 111
Q ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHH-HHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHH
Q 042598 165 ----TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVV-EKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239 (503)
Q Consensus 165 ----~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~l 239 (503)
---+|....-....+++|++++...... .|+-...|.-+ -+|.+.+.++-+.++++-..+.++-+....|..
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 1112222222234577888888887754 45544555433 356677778888887776655554455555544
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--------------------------CcC-----HHHHHHHHHHHHhcCCCCCCC
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGF--------------------------ELG-----TVAYNCILDCVSKLCRKKDPF 288 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~--------------------------~~~-----~~~~~~li~~~~~~g~~~~~~ 288 (503)
.....+.=+-..|++-..++.+.+- -|. +..--.|+-.|.+.++
T Consensus 226 acn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d----- 300 (557)
T KOG3785|consen 226 ACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND----- 300 (557)
T ss_pred HHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc-----
Confidence 4433333221222222222222110 000 1111223333455555
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccC-------CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHh
Q 042598 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNL--CKIR-------RSEDAIKLFYRMGEWGCHPNET-TFLVLIKSLYQA 358 (503)
Q Consensus 289 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g-------~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~ 358 (503)
+.+|..+..++. |. ..|.-++.+. +..| ...-|.+.|+-.-+.+..-|.. --.++..++.-.
T Consensus 301 --VqeA~~L~Kdl~-----Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 301 --VQEAISLCKDLD-----PT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred --HHHHHHHHhhcC-----CC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 667776666553 22 1223333322 1222 2344555565554444443332 233455566666
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHH
Q 042598 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLL-MTKWCAHNRVDKANAL 437 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~ 437 (503)
.++++.+.+++.+..--..-|...|| +..+++..|+..+|+++|-.+..-.+ .|..+|.++ ..+|.++|..+.|.++
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 77888888888777754444555555 67899999999999999987764333 356677654 5688999999999877
Q ss_pred HHHH
Q 042598 438 FDEA 441 (503)
Q Consensus 438 ~~~m 441 (503)
+-++
T Consensus 451 ~lk~ 454 (557)
T KOG3785|consen 451 MLKT 454 (557)
T ss_pred HHhc
Confidence 6554
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.0064 Score=58.28 Aligned_cols=249 Identities=10% Similarity=-0.007 Sum_probs=161.5
Q ss_pred cCCchhHHHHHHHHHHhh--CCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccC-----CCCHHHHHHHHHHHHHcCC
Q 042598 106 FSPEAGRAILGFNHWLTQ--NANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE-----VLGPKTLASCIDRLVRAGR 178 (503)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~~~~g~ 178 (503)
..+..++.-.++|+.+.. ..+-.|..+-.+. =.-..++..+....+.++. .++...+...+........
T Consensus 214 raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Plp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~ 289 (484)
T COG4783 214 RAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH----PLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALP 289 (484)
T ss_pred HcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC----CCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhcccc
Confidence 344446666778888873 2333444432211 1123455666666776643 3566666666665544433
Q ss_pred hhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042598 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLARE 258 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 258 (503)
-..+-.++..-.+. .-...-|..-+ .+...|+.++|+..++.+....+-|...+......+.+.++.++|.+.++.
T Consensus 290 ~~~~~~~~~~~~~~---~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~k 365 (484)
T COG4783 290 NQQAADLLAKRSKR---GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKK 365 (484)
T ss_pred ccchHHHHHHHhCc---cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33333333322211 12233344444 455788999999999998777767777778888899999999999999999
Q ss_pred HHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 259 MYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMG 337 (503)
Q Consensus 259 m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (503)
+... .|+ ....-.+-.+|.+.|+ ..+|..++++..... +-|...|..+-.+|...|+..++..-..+
T Consensus 366 al~l--~P~~~~l~~~~a~all~~g~-------~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-- 433 (484)
T COG4783 366 ALAL--DPNSPLLQLNLAQALLKGGK-------PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-- 433 (484)
T ss_pred HHhc--CCCccHHHHHHHHHHHhcCC-------hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH--
Confidence 8875 555 5566667788888888 678888888877654 46888999999999999988887665543
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 042598 338 EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG--YAIGKKDYYEFLTRL 390 (503)
Q Consensus 338 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~ 390 (503)
++...|++++|...+....+.. ..|+..-+...|+..
T Consensus 434 ----------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 434 ----------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred ----------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 4566788888888888777642 234444455554443
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.0004 Score=66.71 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=93.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 393 (503)
.+++..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++++..+. .+-+......-.+.|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 445566666788999999999988764 543 344677777778888888888888763 234566666677778889
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 394 ERIEQAMSVFEKMKTDGHNP-DSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
++.+.|+++.+++.+. .| +..+|..|..+|.+.|++++|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999988875 45 44689999999999999999988887654
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00094 Score=55.11 Aligned_cols=100 Identities=8% Similarity=-0.132 Sum_probs=74.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
+......+...|++++|...|+...... ..+...|..+..++...|++++|...|+...+.. ..+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 5556677778888888888888877653 2366777778888888888888888888888743 3456777777778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH
Q 042598 393 IERIEQAMSVFEKMKTDGHNPDSE 416 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~~ 416 (503)
.|+.++|...|+...+. .|+..
T Consensus 105 ~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCh
Confidence 88888888888887764 45443
No 133
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.0072 Score=61.37 Aligned_cols=262 Identities=11% Similarity=0.059 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhccC------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC
Q 042598 131 DETLSFFTDYFGRRKDFKAIHDFLVDNKE------------VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD 198 (503)
Q Consensus 131 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~ 198 (503)
...|..+.++|.+.++++-|.-.+-.|+. .++ ..-.-+...-...|.+++|+.+|.+.+.
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 55666666666666655544444433322 111 1111112223445666677776666553
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG--------------- 263 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------- 263 (503)
|..|=+.|...|.|++|.++-+.-.+ +. =..||..-...+...+|.+.|++.|++-....
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 23344456667777777777654222 11 12356666666667778888887776432110
Q ss_pred ----CCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 264 ----FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 264 ----~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
-..|...|...-..+-..|+ ++.|+.+|...+ -|-+++...|-.|+.++|-++-++-
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~Ge-------mdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es--- 964 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGE-------MDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES--- 964 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccc-------hHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc---
Confidence 01112222222222222233 555666554433 3566667777777777777665542
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC--C------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 042598 340 GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG--Y------AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGH 411 (503)
Q Consensus 340 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 411 (503)
| |......+.+.|-+.|++.+|..+|.+...-. + ..+...+|. .......+.-.|.++|++.- .
T Consensus 965 g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl--al~s~~~d~v~aArYyEe~g---~ 1036 (1416)
T KOG3617|consen 965 G---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL--ALMSGGSDLVSAARYYEELG---G 1036 (1416)
T ss_pred c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--HhhcCchhHHHHHHHHHHcc---h
Confidence 2 55566678888888888888888887765310 0 011112221 11122223444445554432 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHH
Q 042598 412 NPDSETYDLLMTKWCAHNRVDKANAL 437 (503)
Q Consensus 412 ~p~~~~~~~li~~~~~~g~~~~A~~~ 437 (503)
-+..-+..|.++|.+.+|+++
T Consensus 1037 -----~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1037 -----YAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred -----hhhHHHHHHHhhcchHHHHHH
Confidence 123345567788888887766
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.015 Score=55.77 Aligned_cols=217 Identities=14% Similarity=0.027 Sum_probs=148.6
Q ss_pred ChhHHHHHHHHhHHhcC-CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042598 178 RPTQVLGFFERMERDYG-FKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLA 256 (503)
Q Consensus 178 ~~~~A~~~f~~m~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 256 (503)
++.++...-+.++...+ -.|+...+...+.+......-..+..++.+..+. .-...-|..-+.. -..|++++|+..+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~aa~YG~A~~~-~~~~~~d~A~~~l 329 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR-GGLAAQYGRALQT-YLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc-cchHHHHHHHHHH-HHhcccchHHHHH
Confidence 34455555555554212 2456666666776655554444444444333321 1222334444443 4679999999999
Q ss_pred HHHHHCCCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHH
Q 042598 257 REMYRGGFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN-VETFNVLISNLCKIRRSEDAIKLFY 334 (503)
Q Consensus 257 ~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~ 334 (503)
+.+... .| |........+.+.+.++ ..+|.+.++.+.... |+ ...+-.+-++|.+.|++.+|+.+++
T Consensus 330 ~~L~~~--~P~N~~~~~~~~~i~~~~nk-------~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 330 QPLIAA--QPDNPYYLELAGDILLEANK-------AKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 999876 45 45556667778888888 789999999988753 55 5667778899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 042598 335 RMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD 414 (503)
Q Consensus 335 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (503)
...... +-|...|..|..+|...|+..++..-..+ +|...|+++.|...+....+. .+.+
T Consensus 399 ~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~ 458 (484)
T COG4783 399 RYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLG 458 (484)
T ss_pred HHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCC
Confidence 987764 45889999999999999998887765544 466788999999998887765 2445
Q ss_pred HHHH---HHHHHHHHh
Q 042598 415 SETY---DLLMTKWCA 427 (503)
Q Consensus 415 ~~~~---~~li~~~~~ 427 (503)
..+| ...|.....
T Consensus 459 ~~~~aR~dari~~~~~ 474 (484)
T COG4783 459 FPDWARADARIDQLRQ 474 (484)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5444 455555443
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00067 Score=56.15 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=93.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP--NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK--KDYYEFL 387 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li 387 (503)
.|..++..+ ..++...+...++.+.+..-.- .....-.+...+...|++++|...|+.+......++. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455555555 4889999999999998863221 1233344557888999999999999999996633322 2444577
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
..+...|++++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8888999999999999875543 334556777888999999999999999864
No 136
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.84 E-value=0.0005 Score=58.86 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=40.7
Q ss_pred CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 042598 265 ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK 322 (503)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 322 (503)
..|-.+|..+|+.|.+.. ....+.++-....+..|.+-|+..|..+|+.||+.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~--~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRD--VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcC--CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 557778888888887653 12224577777778888888888888888888887654
No 137
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.83 E-value=0.0012 Score=54.46 Aligned_cols=103 Identities=7% Similarity=-0.146 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
+..+..+...+...|++++|...|+..... -+.+...|..+-.++...|++++|...|+......+.+...+..+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 334555677788899999999999988753 234677888888889999999999999998877666778888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTV 269 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~ 269 (503)
+...|+.++|...|+...+. .|+..
T Consensus 102 l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 99999999999999998874 45443
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.80 E-value=0.0051 Score=64.04 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=146.6
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHh
Q 042598 148 KAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENGYASYAEKLVKDTA 226 (503)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 226 (503)
.++.++.++.. .++..+-.|.....+.|..++|+.+++...+. .|| ......+...+.+.+++++|+..+++..
T Consensus 73 ~~~~~~~~~~~--~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 73 PELLDYVRRYP--HTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred HHHHHHHHhcc--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 34444444443 46889999999999999999999999999864 665 4567788899999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC
Q 042598 227 NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV 306 (503)
Q Consensus 227 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~ 306 (503)
..-+-+....+.+-.++.+.|++++|..+|++....+ .-+..++..+-.++-+.|+ .++|...|+...+..-
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~-------~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGA-------LWRARDVLQAGLDAIG 219 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhC
Confidence 8777778888899999999999999999999999843 3447888888999999998 8899999998875421
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCC
Q 042598 307 PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG----CHPNETTFLVLIKSLYQAAR 360 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~li~~~~~~~~ 360 (503)
+...-|+..+ ++...-...++++.-++ ..........+|..+.+...
T Consensus 220 -~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (694)
T PRK15179 220 -DGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRN 270 (694)
T ss_pred -cchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCc
Confidence 3445555544 34445566777775443 33334555666666655543
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.76 E-value=0.0011 Score=54.18 Aligned_cols=107 Identities=10% Similarity=-0.120 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+......+...+...|++++|.+.|+..... .+.+...|..+...+...|++++|..+++......+.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 4455666777888899999999999888763 24467788888888889999999999998876655567788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTVAYN 272 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 272 (503)
.|...|++++|...|+...+. .|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 899999999999999988874 45544433
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.025 Score=49.69 Aligned_cols=188 Identities=15% Similarity=0.079 Sum_probs=125.1
Q ss_pred cCChhHHHHHHHHhHHhc--C-CCCCHH-hHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 042598 176 AGRPTQVLGFFERMERDY--G-FKRDKD-SLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDE 251 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~--~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 251 (503)
..+.++.++++.++.... | ..++.. .|..++-+....|+.+.|..+++.+...++-+...--.-.--+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 345777888877776431 3 445553 467777888899999999999999877663332222111122345689999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 042598 252 AKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIK 331 (503)
Q Consensus 252 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (503)
|+++|+.+.+.+ +.|.+++.-=+...-..|+. .+|.+-+.+..+. +.-|...|--+-..|...|++++|.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~-------l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN-------LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 999999998876 55677776655555555652 3444444443332 13688899999999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHH---hCCHhHHHHHHHHHHHc
Q 042598 332 LFYRMGEWGCHPNE-TTFLVLIKSLYQ---AARVGEGDEMIDRMKSA 374 (503)
Q Consensus 332 l~~~m~~~g~~p~~-~t~~~li~~~~~---~~~~~~a~~~~~~m~~~ 374 (503)
.++++.-. .|.. ..+..+...+.- ..+++-+.++|....+.
T Consensus 176 ClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 176 CLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99998774 4543 444444444433 34566788888888774
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.72 E-value=0.037 Score=57.03 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=91.4
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAK 253 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 253 (503)
.+.|+.++|..+++..... +.. |..|...+-.+|.+.|+.++|..+|+...... |+..-...+..+|.+.+++.+-.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~-P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGL-KGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY-PSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccC-CCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665543 111 56666666666666777777776666654322 44555556666666666655433
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCC-C--cHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCCHHHH
Q 042598 254 RLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPF-R--LDSEAEKVLLDMEYNG-VPRNVETFNVLISNLCKIRRSEDA 329 (503)
Q Consensus 254 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~-~--~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A 329 (503)
++=-+|-+ .+.-+.+.+=++++.+...-...+.. . .+.-|++.++.+.+.+ -.-+..-.-.-....-..|++++|
T Consensus 131 kaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 33333332 12334444445555444432221111 0 1223444444444322 101111111112223344555555
Q ss_pred HHHH-HHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC
Q 042598 330 IKLF-YRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375 (503)
Q Consensus 330 ~~l~-~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 375 (503)
++++ ....+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 5555 223332222233333344445555555555555555555543
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.71 E-value=0.0027 Score=51.74 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV 315 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (503)
...+...+...|++++|.+.++.....+ ..+...+..+...+.+.|+ .++|...++.....+ +.+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKE-------YEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcC-CCChHHHHH
Confidence 3344444445555555555555544432 2234444444444444444 445555554444332 223344444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
+...|...|+.++|+..|++..+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555444
No 143
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.70 E-value=0.00076 Score=57.78 Aligned_cols=105 Identities=16% Similarity=0.247 Sum_probs=73.2
Q ss_pred CCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH
Q 042598 307 PRNVETFNVLISNLCKI-----RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK 381 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 381 (503)
..|-.+|..+|+.|.+. |.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-
Confidence 37888899999888754 7788888888889999999999999999887643 221 1111
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (503)
.+-++.-.|-+ +-+-|++++++|...|+-||..|+..|+..+.+.+.
T Consensus 107 ~fQ~~F~hyp~--Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYPR--QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCcH--HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111112222 556677888888888888888888888888877665
No 144
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.68 E-value=0.022 Score=57.59 Aligned_cols=242 Identities=11% Similarity=0.019 Sum_probs=154.3
Q ss_pred CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHH
Q 042598 194 GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG-TVAYN 272 (503)
Q Consensus 194 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~ 272 (503)
.+..|...|..+.-+....|+++.+.+.|++......-....|+.+-..|...|.-..|..++++-....-.|+ ...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34568888888888999999999999999988776667778899999999999998899999887665432243 33333
Q ss_pred HHHHHHHhc-CCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHHc-
Q 042598 273 CILDCVSKL-CRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI-----------RRSEDAIKLFYRMGEW- 339 (503)
Q Consensus 273 ~li~~~~~~-g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~- 339 (503)
..-..|.+. +..++ -++-|.++.+......-......|-.+--+|... ....++++.+++..+.
T Consensus 398 masklc~e~l~~~ee---gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 398 MASKLCIERLKLVEE---GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHhchhhhhh---HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 333333322 22111 1233333333221111113334454444444332 1235678888887665
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHHHH
Q 042598 340 GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK-TDGHNPDSETY 418 (503)
Q Consensus 340 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~ 418 (503)
+-.|+..-|.++ -|+..++++.|.+...+..+.+-.-+...|..+.-.+.-.+++.+|+.+.+... +.|. |....
T Consensus 475 ~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~ 550 (799)
T KOG4162|consen 475 PTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLM 550 (799)
T ss_pred CCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhc
Confidence 455665555544 356788999999999999998767788999999999999999999999988665 3322 22222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 042598 419 DLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
..-+..=..-|+.++|+.....+.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHH
Confidence 222222223556666665555544
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.68 E-value=0.0013 Score=63.17 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHH
Q 042598 131 DETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLC 210 (503)
Q Consensus 131 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~ 210 (503)
.+....+++.+...++++.|..+++++... ++.+...++..+...++-.+|.+++++..+. .+.|....+.-...+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL 245 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345566777788889999999999987542 3445666888888889999999999988863 3457777777788899
Q ss_pred hCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 211 ENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
+.++.+.|+.+.++..+-.+-+-.+|..|..+|...|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999998775555567999999999999999999999988764
No 146
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.046 Score=51.43 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=34.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER 395 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 395 (503)
.|.-+...|+...|.++-.+.. .||..-|-..+.+++..+++++-.++-.. +-++.-|-.+++.|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444444444444444433331 24444444555555555555444433211 1122344444555555555
Q ss_pred HHHHHHHHHH
Q 042598 396 IEQAMSVFEK 405 (503)
Q Consensus 396 ~~~A~~~~~~ 405 (503)
..+|..++..
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555544443
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.63 E-value=0.11 Score=53.73 Aligned_cols=221 Identities=14% Similarity=-0.030 Sum_probs=142.7
Q ss_pred CchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--hcCCChHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHH
Q 042598 108 PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYF--GRRKDFKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVL 183 (503)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 183 (503)
.+..+.|++-...+.++.+-.+ |..+++++ .|.|..++|+.+++.... .-|..+...+-.+|.+.|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 4457888888888777444333 44444444 678899999988876522 238889999999999999999999
Q ss_pred HHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHH-----HHH
Q 042598 184 GFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG-KLDEAKR-----LAR 257 (503)
Q Consensus 184 ~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~-----~~~ 257 (503)
.+|+..... .|+......+..+|++.+.+.+-.+.--++.+..+.+...+=++++.+...- ..+.+.. +-+
T Consensus 98 ~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999999865 6888888889999999988876554444444445556667767777666542 2333332 233
Q ss_pred HHHHCCCCcCH--H-HHHHHHHHHHhcCCCCCCCCcHHHHHHHHH-HHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 042598 258 EMYRGGFELGT--V-AYNCILDCVSKLCRKKDPFRLDSEAEKVLL-DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLF 333 (503)
Q Consensus 258 ~m~~~g~~~~~--~-~~~~li~~~~~~g~~~~~~~~~~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (503)
+|.+.-+.-+. . .--..+....-.+. +..++|++++. ...+.-.+-+...-|--+..+...+++.+..++-
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~-----~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQ-----GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 34433222220 0 01111111112222 23667777773 3333333345555566778888899999999999
Q ss_pred HHHHHcC
Q 042598 334 YRMGEWG 340 (503)
Q Consensus 334 ~~m~~~g 340 (503)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 9988876
No 148
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.62 E-value=0.052 Score=49.79 Aligned_cols=289 Identities=12% Similarity=0.030 Sum_probs=152.5
Q ss_pred HHhcCCChHHHHHHHHhccCCCCHHHHHHHH---HHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHH-HHHHHHhCCCh
Q 042598 140 YFGRRKDFKAIHDFLVDNKEVLGPKTLASCI---DRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRL-VVEKLCENGYA 215 (503)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~-ll~~~~~~g~~ 215 (503)
.+...|++..|+..+...- ..|+..|.++. ..|...|+...|+.=|+...+. +||-..-.. --..+.+.|.+
T Consensus 47 ~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccH
Confidence 3344455555555544331 12334443332 3455556666665555555533 454322111 11234456666
Q ss_pred hHHHHHHHHHhcCCC-------------CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 042598 216 SYAEKLVKDTANEIF-------------PDDKIC--DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280 (503)
Q Consensus 216 ~~a~~~~~~~~~~~~-------------p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 280 (503)
+.|..=|+.+.+.-+ +....| ...+..+...|+...|+.....+.+-. ..|...|..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 666666655532111 111111 224445556677777777777777643 4566677777777777
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHH-----
Q 042598 281 LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF----LVL----- 351 (503)
Q Consensus 281 ~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~l----- 351 (503)
.|+ +..|..-+....+.. .-+..++--+-..+...|+.+.++...++..+ +.||...+ -.|
T Consensus 202 ~~e-------~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 202 EGE-------PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred cCc-------HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence 766 444443333332221 13444445555666677777777777776655 34554221 111
Q ss_pred ----HHHHHHhCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 042598 352 ----IKSLYQAARVGEGDEMIDRMKSAGYAIG---KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD-SETYDLLMT 423 (503)
Q Consensus 352 ----i~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~ 423 (503)
+......+++.++.+-.+...+...... ...+..+..+|...|++.+|++.-.+..+. .|| +.++.--..
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHH
Confidence 1122344555566666665555322211 123444556666777888888877777753 444 666666667
Q ss_pred HHHhcCChHHHHHHHHHHHHCC
Q 042598 424 KWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 424 ~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+|.-...++.|+.-|+...+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777777666543
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.044 Score=48.18 Aligned_cols=186 Identities=9% Similarity=-0.008 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHhhC--CC-CCCCHHH-HHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCChhHHH
Q 042598 110 AGRAILGFNHWLTQN--AN-FSHTDET-LSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLVRAGRPTQVL 183 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~--~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~ 183 (503)
+++..++++..+... .| ..++..+ |..+.-+...+++.+.|...++.. .++.+..+-..=.-.+-..|.+++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 356666766666532 33 4555543 455555556667777666666653 22222222222222345567888888
Q ss_pred HHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042598 184 GFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 184 ~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 263 (503)
++++.+.+. -+.|.+++--=+...-..|+--+|++-+.+..+.+.-|...|.-+-..|...|++++|.-.++++.-.
T Consensus 107 e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 107 EYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred HHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 888888764 24455666555555556677777777777777777778888888888888888888888888888753
Q ss_pred CCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 264 FEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 264 ~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
.| +...+..+-+.+.-.|..+. ++.+.+.|.+-.+
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN----~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAEN----LELARKYYERALK 219 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHH
Confidence 34 34444555555444443221 5566666666554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.0014 Score=48.86 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 042598 166 LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV 245 (503)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 245 (503)
+..+...+...|++++|...|+...+. ...+...+..+...+...|++++|.+.|+........+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 455667778888899999988887753 223446777788888888889999988888766444555678888888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 042598 246 DGKLDEAKRLAREMYR 261 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~ 261 (503)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8999999888887764
No 151
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.11 Score=50.76 Aligned_cols=320 Identities=9% Similarity=-0.042 Sum_probs=183.4
Q ss_pred cCCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc-cCCCC-HHHHHHHHHHHHHcCChhHHH
Q 042598 106 FSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN-KEVLG-PKTLASCIDRLVRAGRPTQVL 183 (503)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~ 183 (503)
.+.+..+.|...|..... .. +++..-|+.-..+|+..|++++|..=-.+. ...|+ ...|+-.-.++.-.|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~-l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIM-LS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHc-cC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 345567888888888775 33 347778899999999999998876655443 33444 568888888888999999999
Q ss_pred HHHHHhHHhcCCCC-CHHhHHHHHHHHHhCCChhHHHHHHH------HHhc----CCCCCHHHHHHHHHHHHhc------
Q 042598 184 GFFERMERDYGFKR-DKDSLRLVVEKLCENGYASYAEKLVK------DTAN----EIFPDDKICDLLIKGWCVD------ 246 (503)
Q Consensus 184 ~~f~~m~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~------~~~~----~~~p~~~~~~~li~~~~~~------ 246 (503)
.-|.+=.+. .| |...++-+..++.... .+.+.|. .+.. ........|..++..+-+.
T Consensus 91 ~ay~~GL~~---d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 91 LAYSEGLEK---DPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHhhc---CCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999886653 34 4566777777662110 0111111 1110 0001112333333333221
Q ss_pred -CCHHHHHHHHHHHHHC--------C-------CCc------------CH----------HHHHHHHHHHHhcCCCCCCC
Q 042598 247 -GKLDEAKRLAREMYRG--------G-------FEL------------GT----------VAYNCILDCVSKLCRKKDPF 288 (503)
Q Consensus 247 -g~~~~a~~~~~~m~~~--------g-------~~~------------~~----------~~~~~li~~~~~~g~~~~~~ 288 (503)
++.+...+....+... | ..| |. .-...+.++..+..+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~----- 239 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD----- 239 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh-----
Confidence 0111111111111110 0 011 00 011222233333222
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHHhCCH
Q 042598 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT-------FLVLIKSLYQAARV 361 (503)
Q Consensus 289 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~li~~~~~~~~~ 361 (503)
++.|.+-+....+.. -++.-++..-.+|...|.+.++...-..-.+.|-. ...- +..+-.+|.+.+++
T Consensus 240 --f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 240 --FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred --HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 455555555544433 34555566667788888877776666665555422 1122 22233456667788
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH-------------------------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 042598 362 GEGDEMIDRMKSAGYAIGKKDYY-------------------------EFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE 416 (503)
Q Consensus 362 ~~a~~~~~~m~~~g~~~~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (503)
+.+...|++.......|+...-. .=-..+.+.|++..|++.|.++++.. +-|..
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 88888888776654444332211 11234667889999999999988774 55778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.|..-.-+|.+.|.+..|+.-.+..++.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 8988888999999998888877766665
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.49 E-value=0.01 Score=49.02 Aligned_cols=115 Identities=15% Similarity=0.043 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCCCC
Q 042598 212 NGYASYAEKLVKDTANEIFPDD---KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT--VAYNCILDCVSKLCRKKD 286 (503)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~ 286 (503)
.++...+...++.+....+.+. ...-.+-..+...|++++|...|++.....-.++. ...-.|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~--- 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ--- 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 5555555555555544322221 12222334455556666666666655554311111 112223333444444
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 042598 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYR 335 (503)
Q Consensus 287 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 335 (503)
+++|...++...... .....+....+.|.+.|+.++|...|++
T Consensus 101 ----~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 ----YDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred ----HHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555553322111 2223344444555555555555555543
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0023 Score=59.39 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhccCC--CCHHHHHHHHHHHHH-cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHH
Q 042598 133 TLSFFTDYFGRRKDFKAIHDFLVDNKEV--LGPKTLASCIDRLVR-AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209 (503)
Q Consensus 133 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~ 209 (503)
+|..+++.+-|.+..+.|..+|.+.... .+..+|-.....-.+ .++.+.|.++|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 3444444444444444444444443211 122222222222112 23333355555544442 223334444444444
Q ss_pred HhCCChhHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 210 CENGYASYAEKLVKDTANEIFPDD---KICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
.+.|+.+.|..+|+.....+.++. ..|...+..=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555544433322211 2444444444444444444444444443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.46 E-value=0.0041 Score=49.18 Aligned_cols=95 Identities=9% Similarity=0.068 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 042598 348 FLVLIKSLYQAARVGEGDEMIDRMKSAGY--AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD----SETYDLL 421 (503)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l 421 (503)
+......+.+.|++++|.+.+..+.+..- ......+..+...+.+.|++++|.+.|+.+... .|+ ...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHHH
Confidence 33444444555555555555555544211 011233444555555555555555555555432 122 2344445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 042598 422 MTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
..++.+.|+.++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.40 E-value=0.007 Score=47.83 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCC-CCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCC---CCCHHHHHHH
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGF-KRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI---FPDDKICDLL 239 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~p~~~~~~~l 239 (503)
.++-.+...+.+.|++++|.+.|+.+.+...- ......+..+..++.+.|+++.|...|+.+.... ......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667777888899999999999998865211 1123566778888999999999999999875422 1224567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g 263 (503)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888889999999999999988763
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0042 Score=46.22 Aligned_cols=88 Identities=15% Similarity=0.239 Sum_probs=38.0
Q ss_pred HHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 042598 353 KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVD 432 (503)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 432 (503)
..+...|++++|...++.+.+.. ..+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33344444444444444443321 1112333334444444445555555554444331 222234444445555555555
Q ss_pred HHHHHHHHHH
Q 042598 433 KANALFDEAV 442 (503)
Q Consensus 433 ~A~~~~~~m~ 442 (503)
+|...+.+..
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.0053 Score=56.97 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWG-CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 389 (503)
.+|-.++...-+.+..+.|..+|.+..+.+ +..+.....+.|. +...++.+.|..+|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999999988653 2333333344443 22356677799999998874 55677888889999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 390 LCGIERIEQAMSVFEKMKTDGHNPDS---ETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
+.+.|+.+.|..+|+..... +.++. ..|...+.-=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998865 33332 48898988888999999999999888874
No 158
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.31 E-value=0.13 Score=47.24 Aligned_cols=126 Identities=7% Similarity=-0.018 Sum_probs=92.0
Q ss_pred HHhcCCChHHHHHHHHhc-cCCCC----HH----------H--HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhH
Q 042598 140 YFGRRKDFKAIHDFLVDN-KEVLG----PK----------T--LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSL 202 (503)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~-~~~~~----~~----------~--~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~ 202 (503)
.+.+.|++++|..=|+.. ...|+ .. . ....+..+...|+...|+.....+.+ -.+-|...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHH
Confidence 456788888888777654 11221 11 1 22334556668999999999999886 345688888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 042598 203 RLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTV 269 (503)
Q Consensus 203 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 269 (503)
..-..+|...|.+..|+.=++...+--.-+..++--+-..+-..|+.+.++...++..+. .||..
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 888999999999999988777765544466677777777788889999999999988874 66654
No 159
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.31 E-value=0.16 Score=47.89 Aligned_cols=82 Identities=7% Similarity=0.098 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042598 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428 (503)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (503)
+..|.-|...|+...|.++-.+. + .|+...|...|.+|+..|+|++-.++... +..+.-|...+.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344444445544444443322 1 24555555555555555555554444321 11234455555555555
Q ss_pred CChHHHHHHHHH
Q 042598 429 NRVDKANALFDE 440 (503)
Q Consensus 429 g~~~~A~~~~~~ 440 (503)
|+..+|..+...
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555555444
No 160
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.23 E-value=0.005 Score=49.00 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHhc-c-----------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 042598 130 TDETLSFFTDYFGRRKDFKAIHDFLVDN-K-----------------EVLGPKTLASCIDRLVRAGRPTQVLGFFERMER 191 (503)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~-----------------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 191 (503)
|..++..+|.++++.|+++.+..+++.. | ..|+..+..+++.+|+.+|++..|+++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4678889999999999999888888653 1 136677777777777777777777777777777
Q ss_pred hcCCCCCHHhHHHHHHHHHh
Q 042598 192 DYGFKRDKDSLRLVVEKLCE 211 (503)
Q Consensus 192 ~~~~~~~~~~~~~ll~~~~~ 211 (503)
.|+++.+...|..|+.-...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 77777677777777765443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.20 E-value=0.023 Score=48.52 Aligned_cols=91 Identities=4% Similarity=-0.120 Sum_probs=65.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEF 386 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 386 (503)
....+..+...|...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+..+.. .-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777788889999999999998876543332 3577778888889999999999998888742 2245556666
Q ss_pred HHHHHccCCHHHHH
Q 042598 387 LTRLCGIERIEQAM 400 (503)
Q Consensus 387 i~~~~~~g~~~~A~ 400 (503)
...|...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766644433
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.0011 Score=48.94 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 324 RRSEDAIKLFYRMGEWGC-HPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 324 g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
|++++|+.+|+++.+... .++...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444455555554444321 11222233344444445555555444444
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.16 E-value=0.0011 Score=48.87 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=52.9
Q ss_pred cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042598 176 AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRL 255 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 255 (503)
.|+++.|+.+|+++.+.....++...+..+..+|.+.|++++|..+++....+. .+....-.+..+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 577888888888887751111134455557888888888888888887721111 2233444556777888888888888
Q ss_pred HHH
Q 042598 256 ARE 258 (503)
Q Consensus 256 ~~~ 258 (503)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 775
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.13 E-value=0.031 Score=47.73 Aligned_cols=118 Identities=12% Similarity=-0.038 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
....+..+...|...|++++|...|++..+...-.++ ...+..+...+.+.|++++|...+++.....+-+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3445566666667777777777777766543011111 345666667777777777777777766553333455555555
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 241 KGWCVDGK--------------LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 241 ~~~~~~g~--------------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
..+...|+ +++|.+++++.... .|+ .|..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 56655554 34555555555432 222 24445555444443
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.047 Score=55.13 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=102.5
Q ss_pred CCCCCChhhHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhC--------CHhHHHHHHH
Q 042598 304 NGVPRNVETFNVLISNLCKIR-----RSEDAIKLFYRMGEWGCHPN-ETTFLVLIKSLYQAA--------RVGEGDEMID 369 (503)
Q Consensus 304 ~g~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~--------~~~~a~~~~~ 369 (503)
.+.+.|...|...+.|..... ..++|.++|++..+. .|+ ...|..+..++.... ++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344678889999998865432 367899999999885 455 344444433332221 2233444444
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 370 RMKSA-GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 370 ~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
..... ....+...|.++.-.....|++++|...+++..+. .|+...|..+...|...|+.++|.+.+++....+ |
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--P 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 43332 23345567777766666789999999999999986 5788999999999999999999999999988765 6
Q ss_pred Ccccccc
Q 042598 449 KPKEYRV 455 (503)
Q Consensus 449 ~~~~~~~ 455 (503)
...||..
T Consensus 485 ~~pt~~~ 491 (517)
T PRK10153 485 GENTLYW 491 (517)
T ss_pred CCchHHH
Confidence 6556654
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.05 E-value=0.057 Score=50.27 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=51.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCCC--HH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCH-----PNE-TTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAIG--KK 381 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~--~~ 381 (503)
.+..+...+.+.|++++|.++|++....-.. .+. ..|...+-++...|+...|.+.++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4455666777788888888888877654221 122 12223333555667777777777776653 23322 23
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHHH
Q 042598 382 DYYEFLTRLCG--IERIEQAMSVFEKMK 407 (503)
Q Consensus 382 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 407 (503)
....||.+|-. ...++.|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 44445555543 334555555555444
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.038 Score=43.55 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=70.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEWGCHPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG----KKDYYEFLTRL 390 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~ 390 (503)
-.++-..|+.++|+.+|++..+.|.... ...+..+-+++...|++++|..+++...... |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 4456678889999999998888776654 3456667788888899999999998877642 22 22222233466
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 391 CGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
...|+.++|++.+-.... ++...|.--|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 778888888888766552 34445655555554
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.094 Score=48.84 Aligned_cols=126 Identities=14% Similarity=0.148 Sum_probs=73.6
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCC-----CCHH
Q 042598 314 NVLISNLCKI-RRSEDAIKLFYRMGE----WGCHPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA-----IGKK 381 (503)
Q Consensus 314 ~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----~~~~ 381 (503)
..+...|-.. |++++|++.|++..+ .| .+. ..++..+...+.+.|++++|.++|+++...-.. .+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 3344566666 889999998887644 23 221 355677788889999999999999988775332 1221
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhc--CChHHHHHHHHH
Q 042598 382 -DYYEFLTRLCGIERIEQAMSVFEKMKTD--GHNPD--SETYDLLMTKWCAH--NRVDKANALFDE 440 (503)
Q Consensus 382 -~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~~~~~--g~~~~A~~~~~~ 440 (503)
.|-..+-++...|+...|.+.|++.... ++..+ ......||.+|-.. ..+++|..-|+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 2233344555678999999999988754 22222 23455566666442 224444444444
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.95 E-value=0.19 Score=52.79 Aligned_cols=126 Identities=16% Similarity=0.068 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHcCChhHHHHH------------------------
Q 042598 132 ETLSFFTDYFGRRKDFKAIHDFLVDNK-E-VLGPKTLASCIDRLVRAGRPTQVLGF------------------------ 185 (503)
Q Consensus 132 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~------------------------ 185 (503)
..|..+-..|+...+...|...|.+.- . ..|...+....+.|++..+++.|..+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 456666666665555566666665542 1 23445555666666666666666555
Q ss_pred ------------HHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 042598 186 ------------FERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDD-KICDLLIKGWCVDGKLDEA 252 (503)
Q Consensus 186 ------------f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a 252 (503)
|+.... --+.|...|..+..+|.+.|.+..|.++|.+...- .|+. ..---.--.-+..|.++++
T Consensus 573 Lea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-rP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-RPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-CcHhHHHHHHHHHHHHHhhhHHHH
Confidence 322221 11235566666777777777777777777654331 1221 1111122233455666666
Q ss_pred HHHHHHHH
Q 042598 253 KRLAREMY 260 (503)
Q Consensus 253 ~~~~~~m~ 260 (503)
+..+....
T Consensus 650 ld~l~~ii 657 (1238)
T KOG1127|consen 650 LDALGLII 657 (1238)
T ss_pred HHHHHHHH
Confidence 66666554
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.93 E-value=0.02 Score=55.15 Aligned_cols=101 Identities=6% Similarity=-0.143 Sum_probs=69.6
Q ss_pred HHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 042598 171 DRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLD 250 (503)
Q Consensus 171 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 250 (503)
..+...|++++|++.|++..+. -..+...|..+..+|.+.|++++|+..++......+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4455677888888888877753 22345667777777788888888888887776544456677777777888888888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHH
Q 042598 251 EAKRLAREMYRGGFELGTVAYNCIL 275 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~~~~li 275 (503)
+|...|++..+. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 888888887764 44443333333
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.93 E-value=0.024 Score=54.61 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=73.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIE 397 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 397 (503)
..+...|++++|+++|++..+.+- -+...|..+..+|...|++++|...++.+++.. ..+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 345567888888888888877532 256677777788888888888888888887743 235567777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Q 042598 398 QAMSVFEKMKTDGHNPDSETYDLLM 422 (503)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~li 422 (503)
+|...|++..+. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 888888888764 45544444443
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.92 E-value=0.24 Score=44.82 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=34.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGEW--GCHPNETTFLVLIKSLYQAARVGEGDEMIDRM 371 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 371 (503)
+..-|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344566667777777777766654 33334455556666777777777666665544
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.90 E-value=0.035 Score=47.17 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=66.8
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP--NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYE 385 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 385 (503)
.....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++...+.. +.....+..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 345667777788888899999999999887653222 23577888888899999999999998888742 223344555
Q ss_pred HHHHHH-------ccCCHHHHHHHHHH
Q 042598 386 FLTRLC-------GIERIEQAMSVFEK 405 (503)
Q Consensus 386 li~~~~-------~~g~~~~A~~~~~~ 405 (503)
+...|. ..|+++.|...+++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 555555 66666655544443
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.89 E-value=0.017 Score=49.10 Aligned_cols=62 Identities=10% Similarity=-0.168 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 200 DSLRLVVEKLCENGYASYAEKLVKDTANEI-FP--DDKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 200 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
..|..+...+...|++++|+..|+...... .+ ...+|..+-..+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455555556666655555543211 11 123555555666666666666666666554
No 175
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.18 Score=49.15 Aligned_cols=167 Identities=10% Similarity=-0.032 Sum_probs=86.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 204 LVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 204 ~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
.+.++.-+..+++.|++-+.....-- -+..-++..-.+|...|.+.++...-+...+.|.. ...-|+.+-.++.+.|.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 34455556667777777776654422 44445566667778888888777777776666532 23344445445444443
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCCCChhhH-------------------------HHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 284 KKDPFRLDSEAEKVLLDMEYNGVPRNVETF-------------------------NVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 284 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-------------------------~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
.....+..+.+...|.+....-..||..+- -.-.+.+.+.|++..|+..|.++++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 322222355666666554332211221110 0012234445555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 339 WGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 339 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.. +-|...|..-.-+|.+.|.+..|..--+..++
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 43 22445555555555555555555555444444
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.25 Score=49.78 Aligned_cols=239 Identities=14% Similarity=0.156 Sum_probs=147.9
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHH------------HHHHHHHHcCChhHHHHHHHHhHHhcCC
Q 042598 128 SHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLA------------SCIDRLVRAGRPTQVLGFFERMERDYGF 195 (503)
Q Consensus 128 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~f~~m~~~~~~ 195 (503)
.|.+..|..+.......-.++.|...|.+.+.-+...... +=|.+| -|++++|+++|-+|..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 4777788877777666667777777777665433332211 112222 47788888888777654
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 042598 196 KRDKDSLRLVVEKLCENGYASYAEKLVKDTANE--IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNC 273 (503)
Q Consensus 196 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 273 (503)
| ..|..+.+.|++-.+.++++.=..+ ..--...|+.+-..++....|++|.+.|..-.. . ..
T Consensus 764 --D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 764 --D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred --h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 2 3456667777777766666532111 112245788888888888888888888875321 1 22
Q ss_pred HHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 274 ILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIK 353 (503)
Q Consensus 274 li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 353 (503)
.++++.+... +++.+.+-..+ +-|....-.|.+.+...|.-++|.+.|-+-.. | ...+.
T Consensus 828 ~~ecly~le~-------f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~ 886 (1189)
T KOG2041|consen 828 QIECLYRLEL-------FGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVH 886 (1189)
T ss_pred HHHHHHHHHh-------hhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHH
Confidence 4556665543 34444444333 34666777888999999999999888765421 2 34567
Q ss_pred HHHHhCCHhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 354 SLYQAARVGEGDEMIDRMKSAGYA-----------IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
+|...+++.+|.++-+...-..+. -+.. ..--|..+.+.|+.-+|.+++.+|.++
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 788888888888776543211110 0111 112456778888888888888888754
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0052 Score=43.04 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=25.9
Q ss_pred HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHh
Q 042598 175 RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA 226 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 226 (503)
..|++++|+++|+.+.+. .+-+...+..+..+|.+.|++++|..+++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555666666555543 12244455555555555555555555555543
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.69 E-value=0.17 Score=51.28 Aligned_cols=142 Identities=9% Similarity=-0.021 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCC-CCcHHHHHHHHHH
Q 042598 228 EIFPDDKICDLLIKGWCVDG-----KLDEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDP-FRLDSEAEKVLLD 300 (503)
Q Consensus 228 ~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~-~~~~~~a~~~~~~ 300 (503)
....|...|...+.+..... +.+.|..+|++..+. .|| ...|..+..++.....+... ...+..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44567788888888765432 367889999988875 565 34444443333322211100 0012233333332
Q ss_pred HHhC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 301 MEYN-GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 301 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.... ..+.+...|.++.-.+...|++++|...|++..+.+ |+...|..+...+...|+.++|.+.+++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2221 122344556655555555677777777777766643 5666677777777777777777777776665
No 179
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.69 E-value=0.075 Score=43.86 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=51.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCccCcccccc
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR-----NGVEVKPKEYRV 455 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 455 (503)
+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.++|+++.+ .|+.|++.+-.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 45556777788899999999999888652 55777899999999999999999999888753 488888876543
No 180
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.68 E-value=0.13 Score=47.79 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--hC----CHhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccCC-
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ--AA----RVGEGDEMIDRMKSAGY---AIGKKDYYEFLTRLCGIER- 395 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--~~----~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 395 (503)
+++.+.+++.|.+.|++-+..+|-+....... .. ....+..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45678888999999999888887664333322 22 34578999999998632 2455666666554 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCccCcccccch-HHHhcCchhhh
Q 042598 396 ---IEQAMSVFEKMKTDGHNPDSE-TYDLLMTKWCAHNR---VDKANALFDEAVRNGVEVKPKEYRVD-PRYLKKPIAVK 467 (503)
Q Consensus 396 ---~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~~~ 467 (503)
.+.++.+|+.+.+.|+..+-. -+.+-|-++..... +..+.++++.+.+.|+++....|..+ +.++...+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 456778888888888766443 44444444443322 45788999999999999998888864 33333332324
Q ss_pred cccccccHHHHHH
Q 042598 468 KGKKRETLPEKMA 480 (503)
Q Consensus 468 ~~~~~~~l~~~~~ 480 (503)
..+...++.+...
T Consensus 236 ~~~~i~ev~~~L~ 248 (297)
T PF13170_consen 236 IVEEIKEVIDELK 248 (297)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444433
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.65 E-value=0.055 Score=44.44 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=70.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
.-.+-.-+...|++++|..+|+-+...+.. +..-|..|-.+|-..|++++|...|........ -|...+-.+-.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 334445567788999999999888764322 445566677777788889999999988887653 456677777888888
Q ss_pred cCCHHHHHHHHHHHHhC
Q 042598 393 IERIEQAMSVFEKMKTD 409 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~~~ 409 (503)
.|+.+.|.+-|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888876643
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.53 E-value=0.09 Score=43.20 Aligned_cols=95 Identities=11% Similarity=-0.130 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGW 243 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~ 243 (503)
..-.+-..+...|++++|.++|+.+..- .|. ..-|-.|--++-..|++++|+..|.....--+-|...+-.+-.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344555667899999999999988753 444 455666777777889999999999987664456778888899999
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042598 244 CVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~ 262 (503)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.46 E-value=0.44 Score=40.04 Aligned_cols=130 Identities=14% Similarity=0.151 Sum_probs=93.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC---CCCCHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG---YAIGKKDYY 384 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~ 384 (503)
|++..--.+..+..+.|+..||...|++...--+.-|....-.+..+....++...|...++.+-+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 67777777888888899999999999887654455567777788888888888888888888877742 2333 334
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 385 EFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
.+.+.|...|+..+|+.-|+..... -|+...-.-.-..+.+.|+.++|..-+.+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 5567788888888888888888865 566654444445566777766665444443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.45 E-value=0.011 Score=41.27 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=10.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
...+..+|.+.|++++|.++++.+.
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 185
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.45 E-value=0.041 Score=43.81 Aligned_cols=102 Identities=14% Similarity=0.249 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
|..++.++|.++++.|+++....+.+..- |+..+... ..+. -.-.....|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~---------~~~~--------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKK---------KEGD--------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCcc---------ccCc--------cCCCCCCCCCHHHHHHHHH
Confidence 34566667777777777766666664432 33322100 0000 0001246689999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcCC
Q 042598 242 GWCVDGKLDEAKRLAREMYR-GGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~ 283 (503)
+|+..|++..|+++.+...+ .+++.+..+|..|+.-.....+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999888664 5777788899999887776655
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.2 Score=44.37 Aligned_cols=135 Identities=6% Similarity=0.009 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT- 388 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~- 388 (503)
..+.+.++..+...|.+.-.++++++.++..-+-+......+.+.-.+.|+.+.|...|+...+..-+.|..+++.++.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3566778888888888999999999999887667788888899999999999999999998887644555555555443
Q ss_pred ----HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 389 ----RLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 389 ----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.|...+++.+|...|.+..... ..|...-|.-.-+..-.|+..+|++..+.|++..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3556788999999998888653 3455555544444555689999999999999875
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.37 E-value=0.2 Score=39.53 Aligned_cols=106 Identities=15% Similarity=0.110 Sum_probs=66.4
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCCC--HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCC---CHHHHHHHHHHH
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRD--KDSLRLVVEKLCENGYASYAEKLVKDTANEIFP---DDKICDLLIKGW 243 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p---~~~~~~~li~~~ 243 (503)
+-.++-..|+.++|+.+|++.... |...+ ...+-.+-+.+...|++++|+.++++.....+- +......+--++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344566678888888888888775 55433 245556667788888888888888877543321 222222233456
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 042598 244 CVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279 (503)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 279 (503)
...|+.++|++.+-.... ++...|.--|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 677888888887766553 23335555555554
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.37 E-value=0.019 Score=39.68 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=38.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 387 LTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
...+.+.|++++|.+.|++..+.. +-+...|..+..++...|++++|..+|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666777777777777777653 335566667777777777777777777777654
No 189
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.34 E-value=0.58 Score=49.35 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=16.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
|...|..+..+|...|++..|+++|.+...
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 445555555555555555555555555443
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.33 E-value=0.083 Score=48.25 Aligned_cols=96 Identities=13% Similarity=0.128 Sum_probs=59.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhCCHhHHHHHHHHHHHcC--CCCCHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE----TTFLVLIKSLYQAARVGEGDEMIDRMKSAG--YAIGKKDYYE 385 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ 385 (503)
.|+..+..+.+.|++++|...|+.+.+.- |+. ..+..+..+|...|++++|...|+.+.+.- -......+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 44444444455677888888887777642 332 355566677777777777777777776631 1112233334
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 042598 386 FLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
+...+...|+.++|.++|++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566677777777777776654
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.32 E-value=0.026 Score=39.05 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=30.3
Q ss_pred HHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 207 EKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
..+.+.|++++|++.|+.+.+..+-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555666666666655554434455555555566666666666666665543
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.29 E-value=1 Score=42.49 Aligned_cols=314 Identities=13% Similarity=0.070 Sum_probs=196.7
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--hcCCChHHHHHHHHhccC--CCCHHHHHHHHHHHH--HcCChhHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYF--GRRKDFKAIHDFLVDNKE--VLGPKTLASCIDRLV--RAGRPTQVL 183 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~--~~g~~~~A~ 183 (503)
.+..+...|+.-.+..| |..+-..+ +-.|+...+.++-.+.+. ..|....-.|+.+-+ -.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 35566777777665444 33333333 456788888888776642 346666666665543 479999999
Q ss_pred HHHHHhHHhcCCCCCHHh--HHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 184 GFFERMERDYGFKRDKDS--LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 184 ~~f~~m~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
+-|+.|... |.... ...|.-.--+.|..+.|..+-+......+-=...+.+.+...|..|+|+.|+++.+.-+.
T Consensus 141 ~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 141 KKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999863 33322 122222334678888888887776554444457788999999999999999999998765
Q ss_pred CC-CCcCHH--HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHccCCHHHHHHHHHHHH
Q 042598 262 GG-FELGTV--AYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV-LISNLCKIRRSEDAIKLFYRMG 337 (503)
Q Consensus 262 ~g-~~~~~~--~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 337 (503)
.. +.+++. .-..|+.+-... ..++ ....|...-.+- ..+.||.+---. -..++.+.|+..++-.+++.+-
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s--~lda--dp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMS--LLDA--DPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHH--HhcC--ChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 43 344432 223344332211 1110 023344333322 234566554333 3467899999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 042598 338 EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIG-KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS 415 (503)
Q Consensus 338 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 415 (503)
+....|+ .. ..|.+...-|.+..-++...+. .++|| ...-..+..+-...|++..|..--+..... .|..
T Consensus 291 K~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre 362 (531)
T COG3898 291 KAEPHPD--IA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE 362 (531)
T ss_pred hcCCChH--HH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh
Confidence 8654554 33 2233333334455555555443 34554 456666778888889998888776666543 6888
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCcc
Q 042598 416 ETYDLLMTKWCA-HNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 416 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p 448 (503)
..|..|...-.. .|+-.++...+-+..+.--.|
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 888877775544 499999988888877654334
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.29 E-value=0.82 Score=41.37 Aligned_cols=58 Identities=14% Similarity=-0.006 Sum_probs=36.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 205 VVEKLCENGYASYAEKLVKDTANEIFPDDKIC---DLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 205 ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
....+.+.|++++|.+.|+++....+-+.... -.+..++-+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33345567777777777777755333222222 34556677778888888888877764
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.25 E-value=0.085 Score=48.18 Aligned_cols=97 Identities=9% Similarity=0.021 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCC---CHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK----DSLRLVVEKLCENGYASYAEKLVKDTANEIFP---DDKI 235 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p---~~~~ 235 (503)
...|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+-..|...|++++|...|+.+.+..+- ....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 345666666667789999999999999986 3443 57788889999999999999999999654332 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
+-.+...+...|+.++|..+|+++.+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555677788899999999999998875
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.12 Score=46.86 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG-KKDYYEFLTRLCGIERIEQ 398 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 398 (503)
..+.+++++|+..|.+.++.. .-|.+-|..=..+|++.|.++.|.+=.+..+. +.|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 345666667777776666642 12445555556666666766666666555554 2232 2456666666666667777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 042598 399 AMSVFEKMKTDGHNPDSETYDL 420 (503)
Q Consensus 399 A~~~~~~m~~~g~~p~~~~~~~ 420 (503)
|.+.|++..+ +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7666666655 3565555543
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.07 E-value=0.032 Score=39.12 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN-RVDKANALFDEAVR 443 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 443 (503)
...|..+-..+...|++++|+..|++..+.. +-+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555566666666666666666665542 224455666666666666 56666666665544
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.06 E-value=1 Score=45.21 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-------
Q 042598 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE------- 416 (503)
Q Consensus 344 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------- 416 (503)
+..+...+..-+-+...+..|-++|..|-. ...+++.....++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 345555555555666777888888887744 245677778888999999888877653 45443
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 042598 417 ----TYDLLMTKWCAHNRVDKANALFDEAVRNGV 446 (503)
Q Consensus 417 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 446 (503)
-|...=.+|.++|+-.+|..+++++....+
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 244555788899999999999998876543
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.05 E-value=0.036 Score=45.80 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHH
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR-----GGFELGTVA 270 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 270 (503)
....++..+...|++++|..+.+.+...-+-|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344556666778888888887777665556777888888888888888888888777653 477776654
No 199
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.02 E-value=1.3 Score=41.12 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042598 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTF 348 (503)
Q Consensus 269 ~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 348 (503)
.++..++.+|...+..+. .++|.++++.+..... -...++-.-+..+.+.++.+++.+++.+|...- .-....+
T Consensus 85 ~iL~~La~~~l~~~~~~~----~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~ 158 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYES----VEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHcCCChHH----HHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchH
Confidence 466677777777665432 6778888888865432 224445455677777999999999999998862 2133455
Q ss_pred HHHHHHH---HHhCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHH---HHccC------CHHHHHHHHHHHHh-CCCCC
Q 042598 349 LVLIKSL---YQAARVGEGDEMIDRMKSAGYAIGKK--DYYEFLTR---LCGIE------RIEQAMSVFEKMKT-DGHNP 413 (503)
Q Consensus 349 ~~li~~~---~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~---~~~~g------~~~~A~~~~~~m~~-~g~~p 413 (503)
..++..+ ... ..+.+...+..+....+.+... .=..++.. ..+.+ +++...++++...+ .+.+.
T Consensus 159 ~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l 237 (278)
T PF08631_consen 159 DSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL 237 (278)
T ss_pred HHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 5555554 333 3456667777776665665553 11111111 11211 25555556664332 22233
Q ss_pred CHHHHHHH-------HHHHHhcCChHHHHHHHHHHH
Q 042598 414 DSETYDLL-------MTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 414 ~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~ 442 (503)
+..+-.++ ...+.+.+++++|.+.|+-..
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44332222 233557789999999988544
No 200
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.01 E-value=0.4 Score=44.67 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHccCC
Q 042598 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV---PRNVETFNVLISNLCKIRR 325 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~ 325 (503)
+++.+.+++.|.+.|+.-+..+|-+..-.... .+..+....+..|..+|+.|++... .++...+.+++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 56778899999999999998877664444433 2333333457788899999987532 2556666666654 3333
Q ss_pred ----HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCC--HhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042598 326 ----SEDAIKLFYRMGEWGCHPNE--TTFLVLIKSLYQAAR--VGEGDEMIDRMKSAGYAIGKKDYYEF 386 (503)
Q Consensus 326 ----~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~l 386 (503)
.+.+..+|+.+.+.|+..+. .....++..+..... +..+.++++.+.+.|+++....|..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 35677788888887776543 233333333222211 44677888888888888777776654
No 201
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.01 E-value=0.065 Score=47.85 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHH
Q 042598 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKI-----RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 367 (503)
..++.|.... +-+.|-.+|-+++..+... +.++-....++.|.+.|+.-|..+|+.||..+-+..-
T Consensus 52 ~~e~~F~aa~--~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------- 122 (406)
T KOG3941|consen 52 HVEKQFEAAE--PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------- 122 (406)
T ss_pred chhhhhhccC--cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------
Confidence 3445554443 2246788888888887643 6677788888899999999999999999987643221
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042598 368 IDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430 (503)
Q Consensus 368 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (503)
.|. ..|-.+.-.|-+ +-+-+++++++|..+|+.||..+-..|++++.+.|.
T Consensus 123 ---------iP~-nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 ---------IPQ-NVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ---------ccH-HHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111 111111112222 223455566666666666666666666666655543
No 202
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.99 E-value=0.06 Score=48.08 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=68.8
Q ss_pred CcCHHHHHHHHHHHHhc---CCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC----------------C
Q 042598 265 ELGTVAYNCILDCVSKL---CRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR----------------R 325 (503)
Q Consensus 265 ~~~~~~~~~li~~~~~~---g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~ 325 (503)
+-|-..|-+.+..+... |+ ..++-....+..|.+-|+..|..+|+.||+.+-+.. +
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R-----~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q 138 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGR-----THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ 138 (406)
T ss_pred cccHHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh
Confidence 34555566666555442 22 336777778888999999999999999999876543 2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~ 360 (503)
-+-+++++++|...|+.||..+=..|+.++.+.+-
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 24588999999999999999999999999887764
No 203
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.96 E-value=0.6 Score=36.86 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 042598 379 GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 447 (503)
+...+...++.+...|+-|.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++++.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33455667778888999999999999987533 688888889999999999999999999999999974
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.94 E-value=1.4 Score=42.12 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=67.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------hCCHhHHHHHHHHHHHcCCCCCHHH---HHHHHHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ---------AARVGEGDEMIDRMKSAGYAIGKKD---YYEFLTRL 390 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~ 390 (503)
.|+.++|++++..+......++..||..+...|-. ....++|...|.+.-+ +.+|... +.+|+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHc
Confidence 67778888888776555556677777766655522 1124556666655443 2233322 22222222
Q ss_pred HccC-CHHHHHHHH---HH-HHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 391 CGIE-RIEQAMSVF---EK-MKTDGH---NPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 391 ~~~g-~~~~A~~~~---~~-m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+... .-.+..++- .. ..+.|. ..|--.+.+++.++.-.|+.++|.+.+++|....
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2211 111222222 21 223332 2344456788899999999999999999998764
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.84 E-value=0.042 Score=38.46 Aligned_cols=59 Identities=8% Similarity=0.020 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCC-CHHhHHHHHHHHHhCC-ChhHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKR-DKDSLRLVVEKLCENG-YASYAEKLVKD 224 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~~~~~~ll~~~~~~g-~~~~a~~~~~~ 224 (503)
..+|..+-..+...|++++|+..|++..+. .| +...|..+-.+|.+.| ++++|++.+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344444455555555555555555554442 12 2334444444444444 34444444443
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.82 E-value=1.2 Score=39.11 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=35.4
Q ss_pred HHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 170 IDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 170 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
...+...|++++|.+.|+.+...+...+- ....-.+..++-+.|+++.|...++++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456677788888888877765332221 23445566777777777777777777644
No 207
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.73 E-value=0.46 Score=37.47 Aligned_cols=135 Identities=11% Similarity=0.130 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERME 190 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 190 (503)
.+++.++...... ..+..-||-+|--....-+-+.+.+.++..|.-.|... +|+.......+-.+-
T Consensus 18 V~qGveii~k~v~----Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~----------C~NlKrVi~C~~~~n 83 (161)
T PF09205_consen 18 VKQGVEIIEKTVN----SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK----------CGNLKRVIECYAKRN 83 (161)
T ss_dssp HHHHHHHHHHHHH----HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-----------S-THHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----cCCccccceeeeecchhhchhHHHHHHHHHhhhcCchh----------hcchHHHHHHHHHhc
Confidence 3455555555544 13344455555444444445556666666554333322 233333333332221
Q ss_pred HhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042598 191 RDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFE 265 (503)
Q Consensus 191 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 265 (503)
.+..-.+..++.+...|+-|.-.+++.++.+.-.++....-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 84 ------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 ------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 234445667778888999999999999887656688888899999999999999999999999998864
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.71 E-value=0.91 Score=37.00 Aligned_cols=114 Identities=16% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
......+++.+...+. .+...+|.+|..|++.+ .++.++.+.. ..+......++..|.+.+.++++..++..
T Consensus 23 ~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 23 LEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5566666666665552 55666777777776543 3333344332 12333444566666666666666666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042598 371 MKSAGYAIGKKDYYEFLTRLCGI-ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427 (503)
Q Consensus 371 m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (503)
+.. |...++.+... ++.+.|.+++.+ .-+...|..++..+..
T Consensus 95 ~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 95 DGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred hcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 422 22223333333 566666666554 1245566666655543
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.67 E-value=0.055 Score=38.34 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=36.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
..|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34566667777777777666542 3344556666666677777777777777766544
No 210
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.63 E-value=0.35 Score=47.81 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHH
Q 042598 144 RKDFKAIHDFLVDNKE--VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKL 221 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 221 (503)
.++++++..++..... .....-.+.++.-+-+.|..+.|+++-.+-..+ .....+.|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHH
Confidence 4666666655542211 112455667777777777777777665554332 3445667777777666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 042598 222 VKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDM 301 (503)
Q Consensus 222 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m 301 (503)
.++. .+...|..|-+...+.|+++-|++.|.+..+ |..|+-.|.-.|+ .+...++.+..
T Consensus 341 a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~-------~~~L~kl~~~a 399 (443)
T PF04053_consen 341 AKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGD-------REKLSKLAKIA 399 (443)
T ss_dssp CCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT--------HHHHHHHHHHH
T ss_pred HHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCC-------HHHHHHHHHHH
Confidence 5433 3556777777777777777777777776432 3444444555555 44555555444
Q ss_pred HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 042598 302 EYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYR 335 (503)
Q Consensus 302 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 335 (503)
...| -+|....++...|+.++..+++.+
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4433 255555566666777777766654
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.5 Score=42.03 Aligned_cols=123 Identities=8% Similarity=-0.002 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHhCCHhHHHHH
Q 042598 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI-----KSLYQAARVGEGDEM 367 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-----~~~~~~~~~~~a~~~ 367 (503)
-...++.++.+...+-+......+.+.-.+.|+.+.|...|++..+..-..|..+++.++ ..+.-.+++..|...
T Consensus 195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 334444444444434455555555555566666666666665554443333433333332 223344555566666
Q ss_pred HHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042598 368 IDRMKSAGYAIGKKDYY--EFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420 (503)
Q Consensus 368 ~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 420 (503)
+.++....- -|....| +|+..| .|+..+|.+.++.|.+. .|...+-++
T Consensus 275 ~~~i~~~D~-~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 275 FTEILRMDP-RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred HhhccccCC-CchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 655554321 1222222 233333 34667777777776654 455444443
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.88 Score=41.49 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCC
Q 042598 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPR 308 (503)
Q Consensus 229 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~ 308 (503)
.+-|...|-.|-.+|.+.|+.+.|..-|....+.. ..+...+..+-.++....+. .+-.++..+|++...... -
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~----~~ta~a~~ll~~al~~D~-~ 225 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQ----QMTAKARALLRQALALDP-A 225 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCC----cccHHHHHHHHHHHhcCC-c
Confidence 44578899999999999999999999999988742 33455566666665554432 225788999999887642 4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIK 353 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 353 (503)
|+.+-.-+-..+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 56666667788899999999999999998863 34444455554
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.56 E-value=1 Score=36.66 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV 315 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (503)
...+|..+...+.......+++.+...| ..+...++.++..|++... .+..+.+.. ..+......
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~--------~~ll~~l~~------~~~~yd~~~ 74 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP--------QKEIERLDN------KSNHYDIEK 74 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH--------HHHHHHHHh------ccccCCHHH
Confidence 3456777777778888888888888776 3677788888888887543 344444432 134455566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
++..|.+.+.++++.-++.++.. .......++. +.++++.|.+++..- -+...|..++..+..
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~---~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIE---HLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHH---cccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 78888888888888888877633 1122222322 227777777777641 255677777666543
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.55 E-value=0.76 Score=44.12 Aligned_cols=147 Identities=12% Similarity=0.175 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 042598 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG-VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT 347 (503)
Q Consensus 269 ~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (503)
.+|...|++..+... ++.|..+|-...+.| +.+++..++++|..+|. |+..-|..+|+--... -||...
T Consensus 398 ~v~C~~~N~v~r~~G-------l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~ 467 (660)
T COG5107 398 FVFCVHLNYVLRKRG-------LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTL 467 (660)
T ss_pred hHHHHHHHHHHHHhh-------HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchH
Confidence 345556666555443 788999999888887 55888899999987774 6777888888753332 234433
Q ss_pred H-HHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042598 348 F-LVLIKSLYQAARVGEGDEMIDRMKSAGYAIG--KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424 (503)
Q Consensus 348 ~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 424 (503)
| +-.+.-+...++-+.|..+|+..+.. +..+ ...|.-+|+--..-|++..|..+=+.|.+. -|...+-....+-
T Consensus 468 y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sr 544 (660)
T COG5107 468 YKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHH
Confidence 3 44566667888888999999865552 2323 467888888888889888888887777764 5655555555555
Q ss_pred HHhc
Q 042598 425 WCAH 428 (503)
Q Consensus 425 ~~~~ 428 (503)
|.-.
T Consensus 545 y~ik 548 (660)
T COG5107 545 YAIK 548 (660)
T ss_pred Hhhh
Confidence 5443
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.50 E-value=1.6 Score=38.33 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=37.9
Q ss_pred HHHHHhCCChhHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 206 VEKLCENGYASYAEKLVKDTANEIF---PDDKICDLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 206 l~~~~~~g~~~~a~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
...+.+.|++++|.+.|+.+....+ --....-.+..++-+.|+++.|...+++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3446678888888888888865322 12234556777888888888888888887753
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.47 E-value=0.047 Score=39.35 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEW----GC-HPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777888888888777776432 21 122 35666677777777777777777776543
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.39 E-value=1.4 Score=37.13 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHH
Q 042598 340 GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNP---DSE 416 (503)
Q Consensus 340 g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 416 (503)
.+.|+...-..|..+....|+..+|...|++...--+.-|....-.+.++....++...|...++++.+.. | .+.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd 161 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPD 161 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCC
Confidence 35688888888999999999999999999999885566788888888899999999999999999988652 3 223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhc-CchhhhcccccccHHHHHHHHHHhhhhh
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLK-KPIAVKKGKKRETLPEKMARKRRRLKQI 489 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l~ki 489 (503)
+.-.+...|...|...+|..-|+.....- |++..-...-..+. .++..++.....++.+...+..+..+|-
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh 233 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYRKH 233 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45567788999999999999999988753 44433222222233 2334455555556666655554444433
No 218
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.30 E-value=0.24 Score=44.87 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=79.0
Q ss_pred HHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 042598 172 RLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDE 251 (503)
Q Consensus 172 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 251 (503)
-..+.+++++|+..|.+..+- .+.|.+-|..=..+|++.|.++.|++=.+....--+-...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 356789999999999998852 234566777788899999999999877666544333345789999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHH
Q 042598 252 AKRLAREMYRGGFELGTVAYNCILDC 277 (503)
Q Consensus 252 a~~~~~~m~~~g~~~~~~~~~~li~~ 277 (503)
|.+.|.+..+ +.|+-.+|-.=+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9999998776 57887776554443
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.41 Score=43.55 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=72.8
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---CCHhHHHHHHHHHHHcCCCCCHHHH
Q 042598 307 PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA---ARVGEGDEMIDRMKSAGYAIGKKDY 383 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~~~ 383 (503)
+-|...|-.|-.+|...|+.+.|..-|.+..+.. .++...+..+..++... .+-.++.++|+++.+.. .-|+..-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4577788888888888888888888888776641 12334444444444332 23456778888877742 2345555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMT 423 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 423 (503)
..|...+...|++.+|...|+.|.+. -|....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 55666777788888888888888765 344444555554
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.17 E-value=0.32 Score=47.15 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 307 PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE----TTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|.+.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356778999999999999999999999998875 4664 45899999999999999999999999885
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.16 E-value=0.054 Score=39.02 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=28.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKTD----GH-NPD-SETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555444321 10 111 2345555555566666666666655543
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.00 E-value=3.3 Score=41.57 Aligned_cols=182 Identities=10% Similarity=0.015 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCC---------HHHHHHHHHHHHH----cCC
Q 042598 112 RAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLG---------PKTLASCIDRLVR----AGR 178 (503)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~li~~~~~----~g~ 178 (503)
.....+|+.+.. =+ +..+..++...+=.||-+...+.+.+.-...+ .-.|+.++..++. ...
T Consensus 174 ~~G~G~f~L~lS--lL---Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 174 YFGFGLFNLVLS--LL---PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHH--hC---CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 344556666654 11 23445566666666777777766665422111 1245555544443 456
Q ss_pred hhHHHHHHHHhHHhcCCCCCHHhHHHHH-HHHHhCCChhHHHHHHHHHhc---CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 042598 179 PTQVLGFFERMERDYGFKRDKDSLRLVV-EKLCENGYASYAEKLVKDTAN---EI-FPDDKICDLLIKGWCVDGKLDEAK 253 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~a~ 253 (503)
.+.|.++++.+.++ -|+...|...- +.+...|++++|++.|+.... .. +.....+--+.-.+.-.++|++|.
T Consensus 249 ~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 249 LEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 78899999999986 68877775544 445678999999999997532 11 122334445666677889999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHH-HhcCCCCCCCCcHHHHHHHHHHHH
Q 042598 254 RLAREMYRGGFELGTVAYNCILDCV-SKLCRKKDPFRLDSEAEKVLLDME 302 (503)
Q Consensus 254 ~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~~~~~~~~a~~~~~~m~ 302 (503)
+.|..+.+.. ..+..+|.-+..+| ...|+...+....++|.++|.+..
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999999753 33444454444433 334443222222366677776654
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.93 E-value=3.9 Score=39.57 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChh
Q 042598 233 DKICDLLIKGWCVDGKLDEAKRLAREMYRGG-FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE 311 (503)
Q Consensus 233 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 311 (503)
...|...|++..+..-++.|..+|-++.+.| +.+++.+++++|..++. |+ ..-|.++|+--... -||..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d-------~~ta~~ifelGl~~--f~d~~ 466 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GD-------RATAYNIFELGLLK--FPDST 466 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CC-------cchHHHHHHHHHHh--CCCch
Confidence 4567788888888888999999999999999 67899999999999987 44 45777888653332 24544
Q ss_pred hH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 312 TF-NVLISNLCKIRRSEDAIKLFYRMGEWGCHPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388 (503)
Q Consensus 312 ~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 388 (503)
.| +-.+..+..-++-+.|..+|+.-.+. +.-+ ...|..+|.--+.-|++..+..+-+.+.+ +.|...+...+..
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~S 543 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTS 543 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHH
Confidence 44 55677778889999999999965443 2223 47899999999999999999988888877 4555555555555
Q ss_pred HHHc
Q 042598 389 RLCG 392 (503)
Q Consensus 389 ~~~~ 392 (503)
.|+-
T Consensus 544 ry~i 547 (660)
T COG5107 544 RYAI 547 (660)
T ss_pred HHhh
Confidence 5554
No 224
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.83 E-value=2 Score=35.93 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
-..+.+..+.+.|++++...|..+|+.+.+.|++.. +..+...++-+|.......+-.+. +....+.++=-+|.
T Consensus 12 vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 12 VLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence 345566667788899999999999999999998654 455666777778777665553333 23344444444444
Q ss_pred Hc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 373 SA-GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 373 ~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+. + ..+..+++.+...|++-+|.++.+.... .+......++.+-.+.+|...-..+|+-..+.+
T Consensus 86 kRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 86 KRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 42 1 1466778889999999999999887642 222333557777777788776666666666544
No 225
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.81 E-value=4.1 Score=44.20 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=57.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK--DYYEFLTRLCGIERIE 397 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~ 397 (503)
+...+++++|--.|+..-+. .-.+.+|-.+|++.+|..+..++... -+.. +-..|+.-+...++.-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 33455666665555543221 23456666777777777776665431 1221 2245666667777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 398 QAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
+|-++..+.... ..-.+..|++...|++|+.+...-
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 777777666532 223445566666777777665443
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.80 E-value=0.22 Score=35.15 Aligned_cols=55 Identities=9% Similarity=-0.092 Sum_probs=30.3
Q ss_pred HHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 208 KLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
.|.+.+++++|.++++.+..-.+.+...|...-..+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555554433344455555555555666666666666655543
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=6.1 Score=40.75 Aligned_cols=300 Identities=12% Similarity=0.089 Sum_probs=166.6
Q ss_pred CCCCCCHHHHHH-----HHHHHhcCCChHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCC-C
Q 042598 125 ANFSHTDETLSF-----FTDYFGRRKDFKAIHDFLVDNKEV--LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGF-K 196 (503)
Q Consensus 125 ~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~ 196 (503)
-|++.+..-|.. +|+-+...+.+..|.++-.-++.+ .+..+|......+.+..+.. =..+.+.+.++.+. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccC
Confidence 566666666644 344555666777777776655542 12567777777777664322 22344444443222 2
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-C--C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 042598 197 RDKDSLRLVVEKLCENGYASYAEKLVKDTAN-E--I--FPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAY 271 (503)
Q Consensus 197 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~--~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 271 (503)
.+..+|..+..-.-..|+.+.|..+++.=.+ + + -.+..-+...+.-+...|+.+....++-.|...- +...|
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 4567788888888899999999998875322 1 1 1233446677788888888888888877776421 11111
Q ss_pred HH----------HHHHHHhcCCCCCCCC-----cHHHHHH--HHHHHHh----CCCCCChhhHHHHHHHHHccCC-----
Q 042598 272 NC----------ILDCVSKLCRKKDPFR-----LDSEAEK--VLLDMEY----NGVPRNVETFNVLISNLCKIRR----- 325 (503)
Q Consensus 272 ~~----------li~~~~~~g~~~~~~~-----~~~~a~~--~~~~m~~----~g~~~~~~~~~~li~~~~~~g~----- 325 (503)
.. +-.-+++..+.....+ ...++.. .++.... .|..|+. ...-++|.+...
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 11 1111222111000000 0001111 1111000 1111222 222333433322
Q ss_pred -----HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 326 -----SEDAIKLFYRMGEW-GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 326 -----~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
..+-+.+++.+... |......|.+--+.-+...|+-.+|.++-.+.+ .||...|..=+.+++..++|++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 11122333333332 444444556666666777888888877766542 47888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 400 MSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
+++-+.++ .+.-|.-.+.+|.+.|+.++|.+++.+.
T Consensus 735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 88777665 2445666888888888888888877653
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.47 E-value=1.8 Score=43.48 Aligned_cols=164 Identities=18% Similarity=0.078 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC-----HHHHHHHHHHHHhc--CCCCCCCCcHHHHHHHHHHHHhCCCC
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGG-FELG-----TVAYNCILDCVSKL--CRKKDPFRLDSEAEKVLLDMEYNGVP 307 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~-----~~~~~~li~~~~~~--g~~~~~~~~~~~a~~~~~~m~~~g~~ 307 (503)
+..+++..+-.||-+.+++.+.+..+.+ +.-. ..+|..++..++-. +. ...+.|.++++.+..+ -
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~-----~~~~~a~~lL~~~~~~--y 263 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGED-----VPLEEAEELLEEMLKR--Y 263 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccC-----CCHHHHHHHHHHHHHh--C
Confidence 4456777777899999999988876533 2211 13344444444443 22 3378899999998864 3
Q ss_pred CChhhHHHHH-HHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHH
Q 042598 308 RNVETFNVLI-SNLCKIRRSEDAIKLFYRMGEWG---CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383 (503)
Q Consensus 308 ~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 383 (503)
|+...|...- ..+...|++++|++.|++..... -+.....+--+...+.-..++++|.+.|..+.+.. ..+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 7777776554 44566899999999999765321 11223444556667788899999999999998853 2344444
Q ss_pred HHHHHH-HHccCCH-------HHHHHHHHHHH
Q 042598 384 YEFLTR-LCGIERI-------EQAMSVFEKMK 407 (503)
Q Consensus 384 ~~li~~-~~~~g~~-------~~A~~~~~~m~ 407 (503)
.-+..+ +...|+. ++|.++|.+..
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 443333 3346777 88888888765
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=0.82 Score=41.13 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=73.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGC--HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAI-GKKDYYEFL 387 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~-~~~~~~~li 387 (503)
.|+.-+.. .+.|++.+|...|...++... .-....+-.|..++...|++++|..+|..+.+. +-.| -....--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57776664 456779999999999887631 112345556889999999999999999988885 2122 235666677
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDS 415 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 415 (503)
....+.|+.++|..+|++..+. -|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 7788899999999999998865 4543
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=7.6 Score=40.13 Aligned_cols=306 Identities=13% Similarity=0.076 Sum_probs=172.8
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCh--HHHHHHHH-hccCC-CCHHHHHHHHHHHHHcCChhHHHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDF--KAIHDFLV-DNKEV-LGPKTLASCIDRLVRAGRPTQVLGF 185 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~-~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 185 (503)
.-..|.++-.|+....+. - ...|.....-+.+..+. +++.+.++ +.+.+ .....|..+...-..+|+.+-|..+
T Consensus 452 ~Y~vaIQva~~l~~p~~~-~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kL 529 (829)
T KOG2280|consen 452 LYSVAIQVAKLLNLPESQ-G-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKL 529 (829)
T ss_pred hhHHHHHHHHHhCCcccc-c-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHH
Confidence 355778888888752211 1 55666666666554333 34444443 33331 3445677777777889999999988
Q ss_pred HHHhHHhcCC----CCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCC-----------CC-HHHHHHHHH--------
Q 042598 186 FERMERDYGF----KRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF-----------PD-DKICDLLIK-------- 241 (503)
Q Consensus 186 f~~m~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------p~-~~~~~~li~-------- 241 (503)
.+.=... +. -.+..-+...+.-+.+.|+.+....++-.+.+... |. ...|.-+++
T Consensus 530 le~E~~~-~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~ 608 (829)
T KOG2280|consen 530 LELEPRS-GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLY 608 (829)
T ss_pred HhcCCCc-cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhh
Confidence 7643221 10 01223455666777888888887777766543211 11 122222222
Q ss_pred HHHhcCCHHHHHHHHH--HHH----HCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHH---HHHHHHHHHh-CCCCCChh
Q 042598 242 GWCVDGKLDEAKRLAR--EMY----RGGFELGTVAYNCILDCVSKLCRKKDPFRLDSE---AEKVLLDMEY-NGVPRNVE 311 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~--~m~----~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~---a~~~~~~m~~-~g~~~~~~ 311 (503)
.+-+.++-.++..-|. ... ..|..|+. ...-+.+.+.....-.....++ -.++...+.. .|..-...
T Consensus 609 d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dl 685 (829)
T KOG2280|consen 609 DFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDL 685 (829)
T ss_pred hhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 0111111111111111 000 01222222 2233344443221110011111 2222333322 23333444
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC 391 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 391 (503)
+.+--+.-+..-|+..+|.++-.+.+ .||...|-.=+.+++..+++++-+++-+..+ .+.-|.-++..|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 55666677788899999988877764 5788888888999999999988766655433 2455778889999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
+.|+.++|.+++-.... .. -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 99999999999876442 11 577899999999998876544
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.15 E-value=0.71 Score=43.78 Aligned_cols=134 Identities=11% Similarity=0.044 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHH----HHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CC-CCC
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRM----GEWGCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GY-AIG 379 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~ 379 (503)
...|..+-+.|.-.|+++.|+..-+.= ++.|-+.. ...+..+-.++.-.|+++.|.+.|+..... |- ...
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 345667777777788999988765432 23343322 356777888888999999999998865432 21 123
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKT----D-GHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
......|-..|.-...++.|+.++..=.. . ...-....+.+|-.+|...|..++|+.+.+.-++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455567777777788888887654221 1 1133567788999999999999998877665544
No 232
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.02 E-value=3.2 Score=34.81 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=89.8
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhc
Q 042598 114 ILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDY 193 (503)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 193 (503)
.+++.+.+.+ .++.++...|..+++.+.+.|++...+.++.-.-...+...-..|++. . +....+.++=-+|..+
T Consensus 13 llEYirSl~~-~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~-~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 13 LLEYIRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSL-G--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHh-H--ccChHHHHHHHHHHHH-
Confidence 3566666666 789999999999999999999999998888655444444444333332 2 2333444444444432
Q ss_pred CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 194 GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 194 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
=...+..++..+...|++-+|+++.+..... +......++.+-.+.+|...=..+|+-..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~---~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV---DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc---ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1124677888899999999999999876442 2223345677777777766655555555543
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.99 E-value=1.9 Score=41.99 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 160 VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK----DSLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
+.+...|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+-.+|...|+.++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999997754 5664 3588899999999999999999988755
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.94 E-value=0.49 Score=43.19 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCccCcccccc
Q 042598 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR-----NGVEVKPKEYRV 455 (503)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 455 (503)
.++..++..+..+|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|+..|+.+.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456777888888888888888888888663 55778888999999999998888888887765 488888877776
Q ss_pred hHHHhcC
Q 042598 456 DPRYLKK 462 (503)
Q Consensus 456 l~~~~~~ 462 (503)
......+
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 6555443
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.93 E-value=6.6 Score=38.14 Aligned_cols=274 Identities=10% Similarity=0.074 Sum_probs=145.8
Q ss_pred hcCCChHHHHHHHHhccC--CCC------HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHH--Hh
Q 042598 142 GRRKDFKAIHDFLVDNKE--VLG------PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL--CE 211 (503)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~--~~ 211 (503)
-+.+++.++..+|.+.-. ..+ ....+.++++|... +.+..........+..| ...|-.+..++ -+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG----KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHH
Confidence 456777788777766511 112 22345667777654 35555555555655433 22344444433 46
Q ss_pred CCChhHHHHHHHHHhcCCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHH
Q 042598 212 NGYASYAEKLVKDTANEIF---------------PDDKICDLLIKGWCVDGKLDEAKRLAREMYRG----GFELGTVAYN 272 (503)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~---------------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~ 272 (503)
.+.+++|.+.+..-.+.+. +|-..=++.++.+...|.+.++..++++|... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 7788888877765533211 23333356788888999999999999988754 3447899999
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042598 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN-VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVL 351 (503)
Q Consensus 273 ~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 351 (503)
.++-+++++ .|-++.+.. .-| ..-|.-||-.|.+.=+.-++ -.=..+.|-...+..+
T Consensus 172 ~~vlmlsrS---------------YfLEl~e~~-s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~i 229 (549)
T PF07079_consen 172 RAVLMLSRS---------------YFLELKESM-SSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTI 229 (549)
T ss_pred HHHHHHhHH---------------HHHHHHHhc-ccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHH
Confidence 988887775 222222110 011 11344555555543211111 1011233444444444
Q ss_pred HHHHHHh--CCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHH
Q 042598 352 IKSLYQA--ARVGEGDEMIDRMKSAGYAIGKK-DYYEFLTRLCGIERIEQAMSVFEKMKTDGHN----PDSETYDLLMTK 424 (503)
Q Consensus 352 i~~~~~~--~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~ 424 (503)
+....-. .+..--.++++.-...-+.|+-. ....++..+.+ +.+++..+-+.+....+. -=..+|..++..
T Consensus 230 mqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 230 MQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred HHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4433221 11222233333333334455543 23344444554 555555555544432211 123567788888
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 042598 425 WCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~ 444 (503)
.++.++..+|.+.+.-+.-.
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhc
Confidence 88888888888887766543
No 236
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.85 E-value=2.7 Score=42.42 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=105.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCC-CHHHHHH-----HHHHHHHcCChhHHHHHHHHhHHhcCCCCC
Q 042598 125 ANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVL-GPKTLAS-----CIDRLVRAGRPTQVLGFFERMERDYGFKRD 198 (503)
Q Consensus 125 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~-----li~~~~~~g~~~~A~~~f~~m~~~~~~~~~ 198 (503)
.|-.|+.... ...|+-.|.+.+|-++|.+.|... -.+.|+- ...-|...|..++-..+.++-.+. ..|
T Consensus 629 rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W---Ar~ 702 (1081)
T KOG1538|consen 629 RGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW---ARN 702 (1081)
T ss_pred cCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH---hhh
Confidence 6666776543 345667789999999999988742 1122221 122333344433332222221110 011
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHH---------HhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKD---------TANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT 268 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~---------~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 268 (503)
+.-=.+....+...|+.++|..+.-+ +..+ -..+..+...+-..+.+...+..|-++|..|-+
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------- 775 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------- 775 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------
Confidence 11111233444556666666554321 1111 123455666666666677778889999988754
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE-----------TFNVLISNLCKIRRSEDAIKLFYRMG 337 (503)
Q Consensus 269 ~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (503)
...+++.....++ +++|..+-+...+- .+|+. -+...=.+|.++|+-.+|..+++++.
T Consensus 776 --~ksiVqlHve~~~-------W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQR-------WDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred --HHHHhhheeeccc-------chHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 2345667777777 55666655554432 12321 23344568889999999999999886
Q ss_pred HcC
Q 042598 338 EWG 340 (503)
Q Consensus 338 ~~g 340 (503)
...
T Consensus 845 nna 847 (1081)
T KOG1538|consen 845 NNA 847 (1081)
T ss_pred hhh
Confidence 543
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=4.4 Score=40.23 Aligned_cols=154 Identities=19% Similarity=0.136 Sum_probs=77.0
Q ss_pred HHHcCChhHHHHHHH--HhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 042598 173 LVRAGRPTQVLGFFE--RMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLD 250 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~--~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 250 (503)
..-.|+++++.++.+ ++... -...-.+.++.-+-+.|..+.|+++..+-. .-.+...+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~----i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN----IPKDQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhccc----CChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHH
Confidence 344666666555543 22211 123446666777777777777766654321 1223344566777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 042598 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAI 330 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 330 (503)
.|.++-++ ..+...|..|-+...+.|+ ++-|++.|.... -|..++-.|.-.|+.+.-.
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~-------~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGN-------IELAEECYQKAK---------DFSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTB-------HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCC-------HHHHHHHHHhhc---------CccccHHHHHHhCCHHHHH
Confidence 66665443 2355567777776666666 666666665443 2455555566666665555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 042598 331 KLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMID 369 (503)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 369 (503)
++.+.....| -++....++.-.|++++..+++.
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555544443 13444455555566666555544
No 238
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.47 E-value=0.81 Score=43.40 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH----hCC-CCCCH
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKS----AGYA-IGKKDYYEFLTRLCGIERIEQAMSVFEKMK----TDG-HNPDS 415 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g-~~p~~ 415 (503)
..|..|-..|.-.|+++.|...++.-.. -|-. .....+..+-.++.-.|+++.|.+.|+.-. +.| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 5677777778888999999988875433 1222 233567778888888999999999887543 222 12334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 416 ETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
.+.-+|-++|.-..++++|+.++.+=
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55667888888888899998887653
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=5.5 Score=35.32 Aligned_cols=205 Identities=11% Similarity=0.040 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 280 (503)
.|.--..+|-...++++|...+.+..++..-|...|.+ ...++.|.-+.++|.+. .--+..|+--...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 34444556666667777666655544322222222211 22344444555555432 1123345555566666
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHH
Q 042598 281 LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGE---WGC--HPNETTFLVLIKSL 355 (503)
Q Consensus 281 ~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~~li~~~ 355 (503)
+|..+.+-..+++|-++ ..+-++++|+++|++-.. .+- .--..-|..+-..+
T Consensus 104 ~GspdtAAmaleKAak~-----------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA-----------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred hCCcchHHHHHHHHHHH-----------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 66633221112222221 123345555555554322 111 11112344444555
Q ss_pred HHhCCHhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh
Q 042598 356 YQAARVGEGDEMIDRMKSA----GYAIGK-KDYYEFLTRLCGIERIEQAMSVFEKMKTD---GHNPDSETYDLLMTKWCA 427 (503)
Q Consensus 356 ~~~~~~~~a~~~~~~m~~~----g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~ 427 (503)
.+...+++|-..+.+-... .--++. ..|...|-.|...+++..|.+.+++--+. .-.-+..+...|+.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 6666666665554432211 111222 33555555666667888888888873322 22335677788888874
Q ss_pred cCChHHHHHHH
Q 042598 428 HNRVDKANALF 438 (503)
Q Consensus 428 ~g~~~~A~~~~ 438 (503)
.|+.+++..++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 46777766553
No 240
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.28 E-value=6.4 Score=35.99 Aligned_cols=126 Identities=13% Similarity=0.181 Sum_probs=90.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-hC-CHhHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGE-WGCHPNETTFLVLIKSLYQ-AA-RVGEGDEMIDRMKSA-GYAIGKKDYYEFLT 388 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~-~~-~~~~a~~~~~~m~~~-g~~~~~~~~~~li~ 388 (503)
|..++. ++..+.+|+.+|+.... +.+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...+|+
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 444442 34556788888884432 3456677888888877765 22 334445555555554 56788889999999
Q ss_pred HHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 389 RLCGIERIEQAMSVFEKMKTD-GHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.+++.+++..-.++++.-... +..-|...|..+|......|+..-. +.+...|
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~----~kiI~~G 264 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM----RKIIDDG 264 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH----HHHhhCC
Confidence 999999999999999987744 5567889999999999999997655 4555555
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.20 E-value=8.3 Score=37.03 Aligned_cols=71 Identities=8% Similarity=-0.083 Sum_probs=34.4
Q ss_pred HHHhCCChhHHHHHHHHHhcC----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 042598 208 KLCENGYASYAEKLVKDTANE----IFPDDKICDLLIKGWCV---DGKLDEAKRLAREMYRGGFELGTVAYNCILDCV 278 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~----~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 278 (503)
.|....+++..+++++.+..- +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+...|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555566666666555431 11111111122223334 566667777666654444455555555554443
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=6.6 Score=35.96 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhC
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEW--GCHPNETTFLVLIKSLYQAA 359 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~~ 359 (503)
|...--.+...|...|+.++|++.+-.+... |.. |...-..++..+.-.|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 3333444455566666666666666555433 222 3344444554444444
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=2.1 Score=44.48 Aligned_cols=177 Identities=15% Similarity=0.176 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHH----HhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL----CENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
....-++.+.+...++.|+.+-+.-. .|......+...| .+.|++++|...|-+-..-+.|.. +|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HH
Confidence 44556677777777777776655422 3444444444444 367788888777766554444433 45
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 320 (503)
.-|.....+.+-..+++.+.+.|+. +...-+.|+.+|.+.++ .+...++.+... .|.- ..-....+..+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd-------~~kL~efI~~~~-~g~~--~fd~e~al~Il 473 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD-------VEKLTEFISKCD-KGEW--FFDVETALEIL 473 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc-------hHHHHHHHhcCC-Ccce--eeeHHHHHHHH
Confidence 5556666666777777777777754 44556677888888776 444444443322 1110 11244556666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 042598 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRM 371 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m 371 (503)
.+.+-.++|..+-.+... +......++. ..+++++|.++++.+
T Consensus 474 r~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 474 RKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 666666666655544322 3344444443 567788887777654
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.95 E-value=15 Score=40.15 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=70.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI----KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
.|+-.++.--++|.+.+|+.++ .|+...+..+. ..+.....+++|--+|+..-+ ..--+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl 972 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKAL 972 (1265)
T ss_pred ccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHH
Confidence 3444444444555555555554 45665555444 444567778888777765432 12346
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSET--YDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+|..+|+|.+|+.+-.+|.. ..|... -..|+.-+...++.-+|-++..+...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 788889999999999888863 222222 25677788888888888777776553
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.92 E-value=13 Score=38.31 Aligned_cols=55 Identities=2% Similarity=0.014 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHh
Q 042598 135 SFFTDYFGRRKDFKAIHDFLVDNKEVLG----PKTLASCIDRLVRAGRPTQVLGFFERM 189 (503)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m 189 (503)
...|..+.+.|++-.+.++++.-|...| ...|+.+-..++....+++|.+.|..-
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556777888899888888876443222 346777777777777777777766543
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=92.86 E-value=1.4 Score=36.61 Aligned_cols=88 Identities=9% Similarity=-0.010 Sum_probs=65.4
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 042598 319 NLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQ 398 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 398 (503)
-+...|++++|..+|+-+...+.. |..-+..|..+|-..+++++|...|......+. -|...+-..-.+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 345789999999999988765432 444556677777778899999999988776543 344445556778888999999
Q ss_pred HHHHHHHHHh
Q 042598 399 AMSVFEKMKT 408 (503)
Q Consensus 399 A~~~~~~m~~ 408 (503)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999888775
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.78 E-value=11 Score=37.25 Aligned_cols=138 Identities=14% Similarity=0.029 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 042598 349 LVLIKSLYQAARVGEGDEMIDRMKSAG-YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS--ETYDLLMTKW 425 (503)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~ 425 (503)
..+..++-+.|+.++|.+.+.+|.+.. ..-+......|+.++...+.+.++..++.+..+... |.. ..|+..+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 345555566677777777777776532 112233455567777777777777777766543322 222 3344433322
Q ss_pred HhcCC---------------hHHHHHHHHHHHHCCCccCccccc-------chHHHhcCchhhhcccccccHHHHHHHHH
Q 042598 426 CAHNR---------------VDKANALFDEAVRNGVEVKPKEYR-------VDPRYLKKPIAVKKGKKRETLPEKMARKR 483 (503)
Q Consensus 426 ~~~g~---------------~~~A~~~~~~m~~~g~~p~~~~~~-------~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 483 (503)
...|+ -..|.+.+.+..+.+ |...-|- .-..++.+.++.+++..+..-++...+..
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN--PHVp~YLLe~K~LilPPehilkrGDSEAiaYAf~hL~hWk~ve 419 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN--PHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRVE 419 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC--CCCchhhhccCCCCCChHHhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 22222 122445566655544 2222221 12344555556777666666666665555
Q ss_pred Hhhhhh
Q 042598 484 RRLKQI 489 (503)
Q Consensus 484 ~~l~ki 489 (503)
..|.-+
T Consensus 420 GAL~lL 425 (539)
T PF04184_consen 420 GALNLL 425 (539)
T ss_pred hHHHHH
Confidence 444433
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=92.67 E-value=5.1 Score=33.33 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=69.0
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042598 351 LIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430 (503)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (503)
...-+...|++++|..+|..+.-.+. .+..-+..|..++-..+++++|...|......+ .-|+..+-..-.+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 33445689999999999998877543 244455666667777899999999998766443 2355555667788999999
Q ss_pred hHHHHHHHHHHHH
Q 042598 431 VDKANALFDEAVR 443 (503)
Q Consensus 431 ~~~A~~~~~~m~~ 443 (503)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988877
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.46 E-value=1.6 Score=39.87 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHH
Q 042598 200 DSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR-----GGFELGTVAYNCI 274 (503)
Q Consensus 200 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~l 274 (503)
.++..++..+...|+++.+...++++..--+-|...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667788888889999999999888776677888999999999999999999999988875 5888887776666
Q ss_pred HHH
Q 042598 275 LDC 277 (503)
Q Consensus 275 i~~ 277 (503)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.37 E-value=9.2 Score=35.44 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=10.5
Q ss_pred HHccCCHHHHHHHHHH
Q 042598 390 LCGIERIEQAMSVFEK 405 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~ 405 (503)
+.+.+++++|.++|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3456677777777763
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=3.2 Score=39.60 Aligned_cols=126 Identities=13% Similarity=-0.035 Sum_probs=90.2
Q ss_pred HHHHHcCChhHHHHHHHHhHHhcC----CC---------CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHH
Q 042598 171 DRLVRAGRPTQVLGFFERMERDYG----FK---------RDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICD 237 (503)
Q Consensus 171 ~~~~~~g~~~~A~~~f~~m~~~~~----~~---------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~ 237 (503)
+.|.+.|++..|..-|+....... .. .-..+++.+.-+|.+.+.+..|++.-.....--++|+...-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 457888999988888877543211 11 12356778888999999999999999988776668888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
---.+|...|+++.|+..|+.+.+. .|+...-+.=|..|.+.-+ +..+...++|..|-.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~-----~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIR-----EYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhh
Confidence 8889999999999999999999984 6665555444444443322 113445667777654
No 252
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=12 Score=36.08 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------------HHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNL--CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI-------------KSL 355 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-------------~~~ 355 (503)
.++|.++-.+..+.. ....+...+++. .-+++.+.|...|++-... .|+...-.++- .-.
T Consensus 185 ~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred chhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 445555544444321 122333334333 3456777888888776653 35543332221 122
Q ss_pred HHhCCHhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH--HHHHhcC
Q 042598 356 YQAARVGEGDEMIDRMKSA---GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET-YDLLM--TKWCAHN 429 (503)
Q Consensus 356 ~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li--~~~~~~g 429 (503)
.+.|++..|.+.|.+.+.. .++++...|........+.|+..+|+.--++..+ .|..- +.-+. .++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHH
Confidence 5678888888888887763 4456666777777777788888888887776663 34322 22222 3444567
Q ss_pred ChHHHHHHHHHHHHCC
Q 042598 430 RVDKANALFDEAVRNG 445 (503)
Q Consensus 430 ~~~~A~~~~~~m~~~g 445 (503)
+|++|.+-|+...+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7888888777776654
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=6.5 Score=41.13 Aligned_cols=248 Identities=10% Similarity=0.070 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHH----HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHH
Q 042598 130 TDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRL----VRAGRPTQVLGFFERMERDYGFKRDKDSLRLV 205 (503)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~l 205 (503)
.......-|..+.+...++-|..+.+..+. |......++..| -+.|++++|..-|-+-.. -+.| ..+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~V 403 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEV 403 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHH
Confidence 344556667777777777888888776664 555555555554 468999999877765442 2333 235
Q ss_pred HHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCC
Q 042598 206 VEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFE-LGTVAYNCILDCVSKLCRK 284 (503)
Q Consensus 206 l~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~ 284 (503)
|.-|.+.....+--.+++.+-+.-..+...-..|+.+|.+.++.++-.++.+.-. .|.. -|. ...+..+.+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~sny- 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNY- 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhCh-
Confidence 6667777777777778888866444677777889999999999999888877644 3321 233 334444444433
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHH
Q 042598 285 KDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEG 364 (503)
Q Consensus 285 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a 364 (503)
.++|..+-.... .+......+ +-..+++++|++++..|.-...-+...+|...+- ....++-
T Consensus 479 ------l~~a~~LA~k~~-----~he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t 540 (933)
T KOG2114|consen 479 ------LDEAELLATKFK-----KHEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEET 540 (933)
T ss_pred ------HHHHHHHHHHhc-----cCHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHH
Confidence 556655543332 233333333 4457889999999988743333334445544332 2345555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-----HHHccCCHHHHHHHHHHHHhC
Q 042598 365 DEMIDRMKSAGYAIGKKDYYEFLT-----RLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 365 ~~~~~~m~~~g~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~ 409 (503)
..++-+.......++....-..+. .+.-.+++..-..+++.|.+.
T Consensus 541 ~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 541 MKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred HHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 555555544333333322222222 122344666666666656654
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.02 E-value=2.2 Score=34.53 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=48.9
Q ss_pred HHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 319 NLCKIRRSEDAIKLFYRMGEWG--CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
...+.|++++|.+.|+.+...- -.-....--.++.+|.+.+++++|...+++.++..-.....-|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3456788888888888887651 1123355566788888888888888888888875433233445555555554
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.82 E-value=4.5 Score=36.54 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CC-CCCHHHHHHH
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGY--AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD-GH-NPDSETYDLL 421 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~~~~~l 421 (503)
..|+.-+.. .+.|++.+|..-|...++..- ......+.-|...+...|++++|..+|..+.+. +- +.-+..+--|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 367777765 578889999999999988521 223345666889999999999999999998854 21 2233667778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 042598 422 MTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.....+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88889999999999999999876
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.59 E-value=2.9 Score=35.73 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCHhHHHHHHHHHHHc---CCCCCH----H
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE--TTFLVLIKSLYQAARVGEGDEMIDRMKSA---GYAIGK----K 381 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~----~ 381 (503)
..+..+...|++.|+.++|++.|.++.+....+.. ..+-.+|..+.-.+++..+.....+.... |-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778888999999999999999999887555443 45677888888899999888888777653 222222 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
.|..+. +...+++..|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 222222 223567888877776654
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=1.3 Score=42.01 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKD 382 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 382 (503)
.+++.+.-+|.+.+++.+|++.-.+....+ .+|.-..-.=-.+|...|+++.|+..|+.+++ +.|+...
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka 326 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKA 326 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHH
Confidence 355666667777777777777777766653 33555555556677777777777777777776 3444433
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=14 Score=34.48 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHc
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN---GVPRNVETFNVLISNLCK 322 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~ 322 (503)
.|+..+|-..++++.+. .+.|...++-.=++|.-.|+ .+.-...++.+... +++--...-....-++..
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~-------~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGN-------QIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccc-------hhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 45555555555555543 34455555555556666555 33333344433321 111111122222333445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA---GYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
.|-+++|.+.-++..+-+ +.|...-.++...+-..|+..++.++..+-... +.-.-...|-...-.+...+.++.|
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 566666666555544432 223333344444444555566665554443321 0001111222222333344566666
Q ss_pred HHHHH
Q 042598 400 MSVFE 404 (503)
Q Consensus 400 ~~~~~ 404 (503)
+++|+
T Consensus 267 leIyD 271 (491)
T KOG2610|consen 267 LEIYD 271 (491)
T ss_pred HHHHH
Confidence 66665
No 259
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=90.44 E-value=14 Score=33.93 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHH
Q 042598 414 DSETYDLLMTKWCAHNRVDKAN 435 (503)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~A~ 435 (503)
...+|.-|+.+++..|+.+..+
T Consensus 320 hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHH
Confidence 3457888999999999877654
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.41 E-value=0.71 Score=27.32 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=5.2 Score=37.20 Aligned_cols=151 Identities=11% Similarity=0.068 Sum_probs=85.9
Q ss_pred HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHH----HHHHHHhcCCHH
Q 042598 175 RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDL----LIKGWCVDGKLD 250 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~ 250 (503)
-.|+..+|-..++++.+ ..+.|...++-.=.+|.-.|+.+.-...++++...-.+|...|.- .--++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45777777777787776 455677777777778888888877777777775544455433332 222334668888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHccCCHH
Q 042598 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP---RNVETFNVLISNLCKIRRSE 327 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~ 327 (503)
+|++.-++..+-+ +-|...-.++...+--.|+ +.++.++...-...--. .-..-|=-..-.+...+.++
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r-------~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGR-------HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcch-------hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 8888777766543 3355555555555555555 44555444332211000 00011111122344557788
Q ss_pred HHHHHHHH
Q 042598 328 DAIKLFYR 335 (503)
Q Consensus 328 ~A~~l~~~ 335 (503)
.|+++|+.
T Consensus 265 ~aleIyD~ 272 (491)
T KOG2610|consen 265 KALEIYDR 272 (491)
T ss_pred HHHHHHHH
Confidence 88888864
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.32 E-value=6.7 Score=31.12 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=64.6
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHHccC
Q 042598 319 NLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIGKKD---YYEFLTRLCGIE 394 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~---~~~li~~~~~~g 394 (503)
+.+..|+.+.|++.|.+.... ..-....||.-..++.-.|+.++|++=+++..+. |-. +... |..--..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456788999999999887764 2336688888888888889999998888888775 332 3322 333333466678
Q ss_pred CHHHHHHHHHHHHhCC
Q 042598 395 RIEQAMSVFEKMKTDG 410 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g 410 (503)
+.+.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888887777665
No 263
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=2 Score=39.45 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
-++++++.++..=+..|+-||..|++.+|+.+.+.+++.+|..+.-.|..
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666555544
No 264
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.06 E-value=21 Score=35.38 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 395 RIEQAMSVFEKMK-TDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 395 ~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
+.|....+..++. ..|...-.+.+.-+-.-|....++++|+++++...+.
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 4444444444443 2233334444555555555555666666665555443
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.86 E-value=26 Score=36.14 Aligned_cols=185 Identities=20% Similarity=0.108 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--cCCCCCCCCcHHHHHHHHHHHHh-------CCCCCChhhHHHHHHH
Q 042598 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSK--LCRKKDPFRLDSEAEKVLLDMEY-------NGVPRNVETFNVLISN 319 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~ 319 (503)
...|.++++...+.|. ...-..+..+|.. .|.. +..+.|...|....+ .| +....+-+-..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~----~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~ 297 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVT----QDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRL 297 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhcccccc----ccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHH
Confidence 4567777777777662 2222222222222 2222 226777777777655 44 33355556666
Q ss_pred HHccC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 042598 320 LCKIR-----RSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ-AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC-- 391 (503)
Q Consensus 320 ~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-- 391 (503)
|.+.. +.+.|+.+|.+..+.| .|+...+...+.-... ..+...|.++|....+.|.. ....+.+++...+
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLG 375 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCC
Confidence 66543 6677999999988877 3466555444443333 35678999999999988753 2222222222222
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 447 (503)
-..+.+.|..++....+.| .|-..--...+..+.. +.++.+.-.+..+.+.|.+
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 2448899999999999887 3332222233444444 7888888888888877754
No 266
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.46 E-value=15 Score=32.58 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=12.4
Q ss_pred HHHhCCChhHHHHHHHHHh
Q 042598 208 KLCENGYASYAEKLVKDTA 226 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~ 226 (503)
.++-.+.+++|-++|.+..
T Consensus 23 lfgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA 41 (288)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 3455567778877777643
No 267
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.36 E-value=2.2 Score=39.13 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=77.9
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC
Q 042598 303 YNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW---GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG 379 (503)
Q Consensus 303 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 379 (503)
..|.+....+....+..-....++++++.++-+++.. -..|+... ..++.-|.+ =+.++++.++..=++.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 4566667777777777777788899999998888654 22333222 223333332 356788888888888899999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999988877743
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.11 E-value=11 Score=30.64 Aligned_cols=79 Identities=9% Similarity=0.110 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS--ETYDLL 421 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l 421 (503)
..|..-. ...+.|++++|.+.|+.+... .-.-....--.++.+|.+.|++++|...+++..+. .|+. +-|-..
T Consensus 12 ~ly~~a~-~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~Y 88 (142)
T PF13512_consen 12 ELYQEAQ-EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHHH
Confidence 3444433 345788999999999988875 11233455666888899999999999999988875 3322 345555
Q ss_pred HHHHHh
Q 042598 422 MTKWCA 427 (503)
Q Consensus 422 i~~~~~ 427 (503)
+.|++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.11 E-value=1.4 Score=27.49 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHh
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERD 192 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~ 192 (503)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777777654
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.52 E-value=1 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=14.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRM 336 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m 336 (503)
|+.|-..|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.19 E-value=5.8 Score=33.86 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC--HHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD--KDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
.+..+...|.+.|+.+.|++.|.++.+. ...+. ...+-.+|......+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4445555555555555555555555542 11111 122334444444444444444444433
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.96 E-value=12 Score=29.76 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=24.2
Q ss_pred HHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
.+..|+.+.|++.|.+... -.+-....||.-..++.-.|+.++|++=+++.
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 3445555555555554443 12223444555555555555555554444443
No 273
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.90 E-value=6.3 Score=33.98 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHhCCHhHH
Q 042598 292 SEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW---GCHPNETTFLVLIKSLYQAARVGEG 364 (503)
Q Consensus 292 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~a 364 (503)
++|.+.|-.+...+.--|......+.. |....+.++++.++.+..+. +-.+|...+.+|.+.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 466666666665544333333333333 33345666666666555432 2355566666666666666666555
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.85 E-value=3 Score=30.97 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERM 189 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m 189 (503)
|++.+..+.+.+|-+.+++..|.++|+.+
T Consensus 40 P~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 40 PEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333333333333333343333333
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.69 E-value=18 Score=31.38 Aligned_cols=203 Identities=17% Similarity=0.084 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChh
Q 042598 233 DKICDLLIKGWCVDGKLDEAKRLAREMYRG-GFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE 311 (503)
Q Consensus 233 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 311 (503)
...+......+...+++..+...+...... ........+......+...++ ...+.+.+.......... ..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~ 130 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK-------YEEALELLEKALALDPDP-DL 130 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHcCCCCc-ch
Confidence 344445555555555555555555554431 112223333333333433333 445555555554422211 11
Q ss_pred hHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 312 TFNVLIS-NLCKIRRSEDAIKLFYRMGEWGC--HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388 (503)
Q Consensus 312 ~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 388 (503)
....... .+...|++++|...|.+...... ......+......+...++.+.+...+....+.........+..+-.
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence 1122222 56677777777777777644211 11233333444445667777777777777766321113556666667
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 389 RLCGIERIEQAMSVFEKMKTDGHNPD-SETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.+...++.+.|...+...... .|+ ...+..+...+...|..+++...+.+..+..
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777778888877777654 333 3444444444446666777777777766554
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.62 E-value=2.1 Score=26.56 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
+..+-..|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555543
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.60 E-value=18 Score=35.89 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=47.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 385 EFLTRLCGIERIEQAMSVFEKMKTDG-HNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.+..+.-+.|+.++|.+.|++|.+.. ..-+......||.++...+.+.++..++.+-.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 35556667899999999999998542 1123457788999999999999999999987544
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.01 E-value=23 Score=31.91 Aligned_cols=71 Identities=15% Similarity=0.038 Sum_probs=42.7
Q ss_pred HHhCCChhHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHh
Q 042598 209 LCENGYASYAEKLVKDTANEIF---PDDKICDLLIKGWCVDGKLDEAKRLAREMYRG-GFELGTVAYNCILDCVSK 280 (503)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~ 280 (503)
-.+.|++++|.+.|+.+.+..+ -...+.-.++.++-+.+++++|+...++.... +-.|| .-|..-|.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~ 118 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSY 118 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHH
Confidence 3467777777777777755322 23345555666777778888888887776653 33333 234444444443
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.74 E-value=23 Score=31.66 Aligned_cols=206 Identities=14% Similarity=0.073 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHH
Q 042598 130 TDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVE 207 (503)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~ 207 (503)
-...|.-...+|....+++++...+.+.. ...+...|.+ ...++.|.-+.++|.+. .--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl---sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL---SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh---HHHHHHHHHHHH
Confidence 34566666777888889988888776642 2223322222 23355666666666643 112345677778
Q ss_pred HHHhCCChhHHHHHHHHHhc---CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 042598 208 KLCENGYASYAEKLVKDTAN---EIFPDD--KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~---~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 282 (503)
.|.++|..+.|-..+++..+ .+.|+. ..|.--+......++...|.+++. .+-+.+.+..
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g---------------k~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG---------------KCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH---------------HhhhHhhhhH
Confidence 89999999888777776533 333432 223222222222333333333322 2223333333
Q ss_pred CCCCCCCcHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH
Q 042598 283 RKKDPFRLDSEAEKVLLDMEYN----GVPRNV-ETFNVLISNLCKIRRSEDAIKLFYRMGEW---GCHPNETTFLVLIKS 354 (503)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~m~~~----g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~ 354 (503)
+ +++|-..|..-... .--++. ..|-+.|-.|.-..++..|...++.--+. .-.-+..+...|+.+
T Consensus 165 k-------f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 165 K-------FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred H-------hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 3 33333333221110 000111 22344445556667777888877764332 122245667777776
Q ss_pred HHHhCCHhHHHHHH
Q 042598 355 LYQAARVGEGDEMI 368 (503)
Q Consensus 355 ~~~~~~~~~a~~~~ 368 (503)
| ..|+.+++..+.
T Consensus 238 y-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVL 250 (308)
T ss_pred h-ccCCHHHHHHHH
Confidence 5 566666655444
No 280
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.17 E-value=9.1 Score=28.86 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERME 190 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 190 (503)
|++.+..+.+.+|-|.+++..|.++|+.++
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 281
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.92 E-value=34 Score=32.85 Aligned_cols=286 Identities=12% Similarity=0.037 Sum_probs=178.9
Q ss_pred HHccCCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH--hcCCChHHHHHHHHhccCCCCHHH--HHHHHHHHHHcCC
Q 042598 103 TLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYF--GRRKDFKAIHDFLVDNKEVLGPKT--LASCIDRLVRAGR 178 (503)
Q Consensus 103 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 178 (503)
+|..-......|...-....+ -+..|...+..++.+- .-.|+.+.+..-|+.|-..|.... ...|.-.--+.|+
T Consensus 92 liAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 92 LIAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhccc
Confidence 333333444455444433332 2445666666666543 346999999999998865343332 2334444457899
Q ss_pred hhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc--CCCCCHH--HHHHHHHHHHh---cCCHHH
Q 042598 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN--EIFPDDK--ICDLLIKGWCV---DGKLDE 251 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~p~~~--~~~~li~~~~~---~g~~~~ 251 (503)
.+.|++.-+..-.. -..-...+.+.+...|..|+|+.|+++++.-+. -+.+++. .-..|+.+-+. ..+...
T Consensus 170 reaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 170 REAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred HHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 99888887776643 222457889999999999999999999998654 3445542 22233333221 234555
Q ss_pred HHHHHHHHHHCCCCcCHHH-HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 042598 252 AKRLAREMYRGGFELGTVA-YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAI 330 (503)
Q Consensus 252 a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 330 (503)
|...-.+..+ +.||.+- -..--.++.+.|+ +.++-++++.+-+....|++. . +..+.+.|+ -++
T Consensus 248 Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~-------~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~ 312 (531)
T COG3898 248 ARDDALEANK--LAPDLVPAAVVAARALFRDGN-------LRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TAL 312 (531)
T ss_pred HHHHHHHHhh--cCCccchHHHHHHHHHHhccc-------hhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHH
Confidence 6655554443 4566332 2233466778887 778888888888765545543 2 223455554 344
Q ss_pred HHHHHHHHc-CCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 042598 331 KLFYRMGEW-GCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG-IERIEQAMSVFEKMK 407 (503)
Q Consensus 331 ~l~~~m~~~-g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 407 (503)
+-+++..+. ..+|| ...-..+..+....|++..|..--+.... ..|....|-.|.+.-.- .|+-.++..++.+..
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 444443321 24454 45666778888889999888776666555 57888888888877554 599999999998887
Q ss_pred hC
Q 042598 408 TD 409 (503)
Q Consensus 408 ~~ 409 (503)
+.
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 65
No 282
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.69 E-value=54 Score=35.04 Aligned_cols=205 Identities=14% Similarity=0.052 Sum_probs=108.5
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHHCCCC----cCH---HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh----CC
Q 042598 239 LIKGWC--VDGKLDEAKRLAREMYRGGFE----LGT---VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY----NG 305 (503)
Q Consensus 239 li~~~~--~~g~~~~a~~~~~~m~~~g~~----~~~---~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~----~g 305 (503)
++.++. -..++++|..+..++...=-. +.. ..++.|- +-...++. .+++|+++-+.... .-
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~-a~val~~~-----~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALR-AQVALNRG-----DPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHH-HHHHHhcC-----CHHHHHHHHHHHHHhccccc
Confidence 344443 347799999998887753212 121 2333332 22222221 16677666655443 22
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHhCC--HhHHHHHHHHHHHc--CC
Q 042598 306 VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI-----KSLYQAAR--VGEGDEMIDRMKSA--GY 376 (503)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-----~~~~~~~~--~~~a~~~~~~m~~~--g~ 376 (503)
....++.+.++..+..-.|++++|..+.++..+..-.-+...|.... ..+-..|. ..+....|...... +-
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 33567777888888888999999999887765542222333332221 22344552 33333334433332 10
Q ss_pred ----CCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 377 ----AIGKKDYYEFLTRLCG-IERIEQAMSVFEKMKTDGHNPDSETY--DLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 377 ----~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
.+-..++..+..++.+ .+...+|..-++--......|-.... ..|+..+...|+.++|...++++......+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 1223455555566555 22233333333333322222222222 2567788889999999999999987755443
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.57 E-value=0.37 Score=39.51 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=29.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMID 369 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 369 (503)
+|..+.+.+..+....+++.+...+..-+....+.++..|++.+..+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555556666666666666655444455555666666666655555555554
No 284
>PRK11906 transcriptional regulator; Provisional
Probab=85.51 E-value=40 Score=33.31 Aligned_cols=167 Identities=10% Similarity=0.028 Sum_probs=92.8
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHH-HCCCCcC-HHHHHHHHHHHHhc---CCCCCCCCcHHHHHHHHHHH
Q 042598 234 KIC--DLLIKGWCVD-----GKLDEAKRLAREMY-RGGFELG-TVAYNCILDCVSKL---CRKKDPFRLDSEAEKVLLDM 301 (503)
Q Consensus 234 ~~~--~~li~~~~~~-----g~~~~a~~~~~~m~-~~g~~~~-~~~~~~li~~~~~~---g~~~~~~~~~~~a~~~~~~m 301 (503)
..| ..++.+.... -..+.|+.+|.+.. ...+.|+ ...|..+-.++... |... ......+|.+.-+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rA 330 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYV 330 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 445 5566665552 23567888888887 2234555 33444443333321 1111 223345566666655
Q ss_pred HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCC
Q 042598 302 EYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE-TTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIG 379 (503)
Q Consensus 302 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~ 379 (503)
.+.+. -|......+-.+....++.+.|..+|++.... .||. .+|...-..+.-.|+.++|.+.+++..+. -...-
T Consensus 331 veld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 331 SDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 55442 46666666666667777788888888877664 3443 34444444455678888888888776552 12222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
....-..|+.|+.. .+++|.+++-+
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 33444455566654 36666666543
No 285
>PRK09687 putative lyase; Provisional
Probab=85.40 E-value=31 Score=31.98 Aligned_cols=237 Identities=11% Similarity=-0.003 Sum_probs=124.2
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCcCHHHHH
Q 042598 197 RDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL----DEAKRLAREMYRGGFELGTVAYN 272 (503)
Q Consensus 197 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~~~ 272 (503)
+|.......+.++...|..+-...+..-+.. +|...-...+.+++..|+. +++...+..+... .+|..+-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 4555555555555555543322222222222 3444445555566666652 3566666655322 45666666
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352 (503)
Q Consensus 273 ~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 352 (503)
..+.+++..+..... ....+...+..... .++..+--..+.++++.|+ ++++..+..+.+. +|...-...+
T Consensus 110 ~A~~aLG~~~~~~~~--~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 110 SAINATGHRCKKNPL--YSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHhcccccccc--cchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 666666665432110 01233333333322 1344555566677777665 4566666666553 3444445555
Q ss_pred HHHHHhC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 042598 353 KSLYQAA-RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRV 431 (503)
Q Consensus 353 ~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 431 (503)
.++.+.+ .-+.+...+..+.. .++..+-...+.++++.|+ ..|...+-+..+. ++ ..-..+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH
Confidence 5555542 13355555555554 3466666777778888777 4555555555543 22 234577777777774
Q ss_pred HHHHHHHHHHHHCCCccCcccccchHHH
Q 042598 432 DKANALFDEAVRNGVEVKPKEYRVDPRY 459 (503)
Q Consensus 432 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 459 (503)
+|...+..+.+.. +|...-...+..
T Consensus 252 -~a~p~L~~l~~~~--~d~~v~~~a~~a 276 (280)
T PRK09687 252 -TLLPVLDTLLYKF--DDNEIITKAIDK 276 (280)
T ss_pred -hHHHHHHHHHhhC--CChhHHHHHHHH
Confidence 6777777777643 344444333333
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.39 E-value=19 Score=29.95 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=23.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 321 CKIRRSEDAIKLFYRMGEWGCHPNE---TTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.+.++.+++..++..|.-- .|.. .++...+ +...|++.+|..+|+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc
Confidence 3445555666665555442 3332 2222222 3455556666666655544
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.82 E-value=7.9 Score=28.84 Aligned_cols=46 Identities=4% Similarity=0.109 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 328 DAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
++.+-++.+...+..|+.....+.+++|.+.+++..|.++++-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444555555666666666666666666666666666665553
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.40 E-value=0.3 Score=40.07 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042598 350 VLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429 (503)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (503)
.++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcc
Confidence 3567777788899999999999987766788999999999999988889888887221 133456788888889
Q ss_pred ChHHHHHHHHHHHH
Q 042598 430 RVDKANALFDEAVR 443 (503)
Q Consensus 430 ~~~~A~~~~~~m~~ 443 (503)
.+++|..++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 99999888887543
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.69 E-value=6.3 Score=29.69 Aligned_cols=44 Identities=5% Similarity=0.095 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 330 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.+-++.+....+.|+.....+.+.+|.+.+++..|.++++-++.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444445566666666666666666666666666665554
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.42 E-value=26 Score=29.51 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH-HHHHHH-
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET-TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK-DYYEFL- 387 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li- 387 (503)
..|..-++ .++.+..++|+.-|..+.+.|..--.+ .-..+.......|+-..|...|+++-..--.|-.. -...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 456788899999999998876542221 12223344567888889999999887754344332 111121
Q ss_pred -HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 388 -TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 388 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
-.+...|.+++.....+.+...|-+.-...-.+|--+-.+.|++.+|...|..+....-.|
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2345688888888888877655433344445667777778999999999998887654334
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.20 E-value=3.3 Score=24.94 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 416 ETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888777654
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.02 E-value=30 Score=29.86 Aligned_cols=202 Identities=17% Similarity=0.051 Sum_probs=105.7
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTAN--EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILD 276 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 276 (503)
...+......+...+.+..+...+..... ........+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34445555555555555555555554433 2223334444455555555555566666655554322221 11111111
Q ss_pred -HHHhcCCCCCCCCcHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 277 -CVSKLCRKKDPFRLDSEAEKVLLDMEYNGV--PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIK 353 (503)
Q Consensus 277 -~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 353 (503)
.+...|+ .+.+...+........ ......+......+...++.+++...+.+............+..+-.
T Consensus 138 ~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
T COG0457 138 GALYELGD-------YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210 (291)
T ss_pred HHHHHcCC-------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence 4444454 5566666655533111 01222333333335566777777777777766421113566666777
Q ss_pred HHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 354 SLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 354 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
.+...++++.+...+......... ....+..+...+...|..+.+...+......
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777788888888777763211 2333444444444666788888877777654
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.79 E-value=63 Score=33.44 Aligned_cols=250 Identities=14% Similarity=0.058 Sum_probs=130.1
Q ss_pred hhHHHHHHHHhHHhcCCCCCHHhHHHH----HHH-HHhCCChhHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcC-
Q 042598 179 PTQVLGFFERMERDYGFKRDKDSLRLV----VEK-LCENGYASYAEKLVKDTANE-----IFPDDKICDLLIKGWCVDG- 247 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~~~~~~~~l----l~~-~~~~g~~~~a~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g- 247 (503)
...|.+.|+...+. -+...-..+ ..+ ++...+.+.|+.+|+...+. ..-+....+-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~----g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhh----cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 45677777777664 222222222 223 45667888888888877441 0013334555666666543
Q ss_pred ----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--
Q 042598 248 ----KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC-- 321 (503)
Q Consensus 248 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-- 321 (503)
+.+.|..+|...-+.| .|+....-..+..... ..+....|.+.|..--..|.. +..-+-+++....
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~------~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGT------KERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLG 375 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCC------ccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCC
Confidence 5677888888888877 3454443333322222 112267888888888777742 3333322222222
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hc----cC
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL---CG----IE 394 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~----~g 394 (503)
...+.+.|..++++..+.| .|-..--...+..+.. +.++.+.-.+..+.+.|.+-....-..++... .. ..
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 3346788888888888887 3332222233344444 77777777777777665542222111111111 11 22
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCC
Q 042598 395 RIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH----NRVDKANALFDEAVRNG 445 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g 445 (503)
+.+.+...+......| +......|-..|... .+.+.|...+....+.+
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 4555666666555432 333333333333322 23555555555555444
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.70 E-value=16 Score=36.88 Aligned_cols=44 Identities=16% Similarity=0.009 Sum_probs=21.1
Q ss_pred hCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042598 211 ENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREM 259 (503)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 259 (503)
+.|+.+.|.++..+. -+..-|..|-++....|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344444444444332 22334555555555555555555555443
No 295
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.41 E-value=46 Score=31.63 Aligned_cols=135 Identities=8% Similarity=-0.002 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC--CCh
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRGGFE-----LGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP--RNV 310 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~--~~~ 310 (503)
++-.++.-.+.++++++.|+...+.-.. ....+|..|-..|.+..+.+++.-...+|.++.+...-.++. -..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3455555556677777777765542111 123466677777777766443333333333333332211110 001
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMG----EWGCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
....-|--++-..|...+|.+.-++.. ..|-.+. ......+.+.|...|+.|.|+.-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122234456677788888877777643 3343322 2334556677888899998888777654
No 296
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.94 E-value=43 Score=30.91 Aligned_cols=164 Identities=14% Similarity=0.074 Sum_probs=79.9
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 148 KAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
+.+.+++++....+....+. -.......|+..+|..+|+..... ..-+...--.+..+|...|+++.|..++..+..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~-~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALA-EAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHHhcChHHHHHHH-HhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 35555555544332222222 222345567777777777766653 122334455566677777777777777776644
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC
Q 042598 228 EIFPD-DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG 305 (503)
Q Consensus 228 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g 305 (503)
...-+ ......-|..+.+.....+...+-.+.-. .| |...--.+-..+...|+ .++|.+.+-.+.++.
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~-------~e~Ale~Ll~~l~~d 266 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGR-------NEAALEHLLALLRRD 266 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhc
Confidence 32211 12222334444444444444444444333 33 44444555566666666 556655554444321
Q ss_pred -CCCChhhHHHHHHHHHccC
Q 042598 306 -VPRNVETFNVLISNLCKIR 324 (503)
Q Consensus 306 -~~~~~~~~~~li~~~~~~g 324 (503)
---|...-..++..+.--|
T Consensus 267 ~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 267 RGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred ccccCcHHHHHHHHHHHhcC
Confidence 1123344444555444444
No 297
>PRK09687 putative lyase; Provisional
Probab=81.67 E-value=44 Score=30.95 Aligned_cols=219 Identities=10% Similarity=0.010 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHhHHhcCCCCCHHhHHH
Q 042598 129 HTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRP----TQVLGFFERMERDYGFKRDKDSLRL 204 (503)
Q Consensus 129 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~f~~m~~~~~~~~~~~~~~~ 204 (503)
+|.......+.++...|. +++...+.+.-...|...-...+.++...|+. +++..++..+... .+|..+-..
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHH
Confidence 444444445555554443 22333333332234555555555566665553 3455555544222 355555555
Q ss_pred HHHHHHhCCCh-----hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 042598 205 VVEKLCENGYA-----SYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279 (503)
Q Consensus 205 ll~~~~~~g~~-----~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 279 (503)
.+.+++..+.- ..+...+..... .++..+-...+.++++.|+ +++...+-.+.+ .+|..+-...+.+++
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg 184 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 55555544321 112222211111 1234444445555555554 234444444433 233334444444444
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 042598 280 KLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA 359 (503)
Q Consensus 280 ~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 359 (503)
+.+.. ...+...+..+.. .+|..+-...+.++++.|+ ..|+..+-+..+.+. .....+.++...|
T Consensus 185 ~~~~~------~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig 249 (280)
T PRK09687 185 SNKYD------NPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELG 249 (280)
T ss_pred cCCCC------CHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcC
Confidence 43210 1233333333332 2344445555555555555 234444444333221 1223444444444
Q ss_pred CHhHHHHHHHHHHH
Q 042598 360 RVGEGDEMIDRMKS 373 (503)
Q Consensus 360 ~~~~a~~~~~~m~~ 373 (503)
.. +|...+..+.+
T Consensus 250 ~~-~a~p~L~~l~~ 262 (280)
T PRK09687 250 DK-TLLPVLDTLLY 262 (280)
T ss_pred CH-hHHHHHHHHHh
Confidence 42 34444444443
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.60 E-value=16 Score=34.52 Aligned_cols=202 Identities=10% Similarity=0.024 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHH-hccC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH---H
Q 042598 132 ETLSFFTDYFGRRKDFKAIHDFLV-DNKE-------VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK---D 200 (503)
Q Consensus 132 ~~~~~ll~~~~~~~~~~~a~~~~~-~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~---~ 200 (503)
.+|..+..+.++.|.+++++..-. .+.. ..-...|-.+-.++-+--++.+++.+-.+-....|..+.. .
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 345566666777777766554422 1110 0112345566666666666777776666555443443311 2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCHHH
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDTAN------EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR----GGFELGTVA 270 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~ 270 (503)
..-++-.++...+.++++++.|+..-+ .-.....+|..|-+.|.+..|+++|.-+..+..+ .|+.-=..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 233455667777889999999987632 1113346788999999999999998876655443 232211122
Q ss_pred HHHH-----HHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 042598 271 YNCI-----LDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYR 335 (503)
Q Consensus 271 ~~~l-----i~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 335 (503)
|..+ --++-..|+..++.+--++|.++--++-.+ ..-....-.+.+.|-..|+.|.|+.-|++
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr--a~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR--ALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 3222 234556677666555555666555444321 12234455677889999999998887765
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.57 E-value=3.4 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=14.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMG 337 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (503)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555566666666666666665543
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.29 E-value=4.9 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 416 ETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888888899999999988888764
No 301
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.81 E-value=57 Score=31.63 Aligned_cols=86 Identities=13% Similarity=-0.021 Sum_probs=55.9
Q ss_pred HHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH-HHHHHHH--HHHHcc
Q 042598 320 LCKIRRSEDAIKLFYRMGEW---GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK-KDYYEFL--TRLCGI 393 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li--~~~~~~ 393 (503)
..++|++.+|.+.|.+.+.. ++.|+...|........+.|+.++|..--++..+ .|. .....+. .++.-.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHH
Confidence 45778888888888877653 4556666677777777788888888777777665 222 2222222 233346
Q ss_pred CCHHHHHHHHHHHHhC
Q 042598 394 ERIEQAMSVFEKMKTD 409 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~ 409 (503)
++|++|.+-|++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6788888877776654
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.41 E-value=18 Score=31.33 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA---GYAIGKKDYYEFLTRLCGIERIEQAM 400 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~ 400 (503)
-++|.+.|-++...+..-+......|.. |....+.+++.+++....+. +-.+|...+..|+..|-+.|+.+.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3556666666666654434444433333 33455666666666666553 22456666666666666666666554
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.97 E-value=85 Score=33.12 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHhcCCChHHHHHHHHhcc-CCC---CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCC
Q 042598 138 TDYFGRRKDFKAIHDFLVDNK-EVL---GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENG 213 (503)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g 213 (503)
++-+.+.+.+++|++..+..+ ..+ -..++...|..+.-.|++++|-.+.-.|... +..-|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcccc
Confidence 345566777888888887763 333 3567888899999999999998888888753 6777777777777777
Q ss_pred ChhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHh
Q 042598 214 YASYAEKLVKDTANEI-FPDDKICDLLIKGWCV 245 (503)
Q Consensus 214 ~~~~a~~~~~~~~~~~-~p~~~~~~~li~~~~~ 245 (503)
+......+ +..+- ..+...|..++..|..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 66543333 33221 2355678888888876
No 304
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=79.82 E-value=46 Score=30.00 Aligned_cols=169 Identities=17% Similarity=0.085 Sum_probs=107.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCC
Q 042598 266 LGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV--PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW-GCH 342 (503)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~ 342 (503)
|-...|+.-+..+-+ |+ +++|.+.|+.+..+.. +-...+--.++.++.+.+++++|+...++.... +-.
T Consensus 33 p~~~LY~~g~~~L~~-gn-------~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQK-GN-------YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhc-CC-------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 444556666555443 66 8999999999986532 223445556778889999999999999998765 444
Q ss_pred CCHHHHHHHHHHHHHh-------CCHh---HHHHHHHHHHHc----CCCCCHHHH------------HHHHHHHHccCCH
Q 042598 343 PNETTFLVLIKSLYQA-------ARVG---EGDEMIDRMKSA----GYAIGKKDY------------YEFLTRLCGIERI 396 (503)
Q Consensus 343 p~~~t~~~li~~~~~~-------~~~~---~a~~~~~~m~~~----g~~~~~~~~------------~~li~~~~~~g~~ 396 (503)
|| .-|..-|.+.+.. ++.. +|..-|+++++. ...+|...- ..+.+-|.+.|.+
T Consensus 105 ~n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 105 PN-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CC-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 44 3344444444432 2223 344444444442 223343221 1244568889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 397 EQAMSVFEKMKTDGHNPDSET---YDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
..|..-+++|.+. .+-+..+ .-.+..+|-..|-.++|...-+-+..+
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999976 3333333 445667888999999988877665544
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.58 E-value=59 Score=31.05 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP---NETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
....+|..+...+.+.|+++.|...+.++...+... +......-.......|+.++|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445678888888999999999999888887644211 2233334455566778888888888887773
No 306
>PRK11906 transcriptional regulator; Provisional
Probab=78.87 E-value=39 Score=33.32 Aligned_cols=159 Identities=8% Similarity=-0.093 Sum_probs=98.1
Q ss_pred HHH--HHHHHHHhcCCC-----hHHHHHHHHhcc----CCCC-HHHHHHHHHHHHH---------cCChhHHHHHHHHhH
Q 042598 132 ETL--SFFTDYFGRRKD-----FKAIHDFLVDNK----EVLG-PKTLASCIDRLVR---------AGRPTQVLGFFERME 190 (503)
Q Consensus 132 ~~~--~~ll~~~~~~~~-----~~~a~~~~~~~~----~~~~-~~~~~~li~~~~~---------~g~~~~A~~~f~~m~ 190 (503)
..| ...+.+.....+ .+.|..+|.+.- ..|+ ...|..+-.++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 556666554332 357777887653 2332 3444444333322 223445666666555
Q ss_pred HhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHH
Q 042598 191 RDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG-GFELGTV 269 (503)
Q Consensus 191 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~ 269 (503)
+. -.-|......+-.+..-.++++.|..+|++...--+-...+|...--.+.-.|+.++|.+.+++..+. -...-..
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 42 23466777777777778888999999999876533333455555555566689999999999995543 2233345
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 042598 270 AYNCILDCVSKLCRKKDPFRLDSEAEKVLLD 300 (503)
Q Consensus 270 ~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~ 300 (503)
.....|+.|+..+ +++|.+++-.
T Consensus 410 ~~~~~~~~~~~~~--------~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP--------LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc--------hhhhHHHHhh
Confidence 5666777888764 5778877744
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.33 E-value=64 Score=30.78 Aligned_cols=193 Identities=13% Similarity=0.033 Sum_probs=97.5
Q ss_pred HHHHHhcCCChHHHHHHHHhccC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCC---CCCHHhHHHHHHHHHhC
Q 042598 137 FTDYFGRRKDFKAIHDFLVDNKE-VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGF---KRDKDSLRLVVEKLCEN 212 (503)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~~~~~~ll~~~~~~ 212 (503)
...+.-+.|+|+...+....... .++...+.++... +.|+.+++....+.......- .....+|......+.+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34566777888887776665543 2344555555443 778888877777666543100 01122333333333333
Q ss_pred CChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHhcC
Q 042598 213 GYASYAEKLVKDTANEIFPDDKICDLLIKGWCVD-----GKL---DEAKRLAREMYR--GGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 213 g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~---~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g 282 (503)
..+.+..++.+-..... .+......++..+... .++ +..+.+-..+.. ........++..+...+.+.|
T Consensus 82 q~L~Elee~~~~~~~~~-~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g 160 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLS-QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAG 160 (352)
T ss_pred hHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCC
Confidence 33333333222221100 0011112222222111 111 112221111211 112334567778888888888
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 283 RKKDPFRLDSEAEKVLLDMEYNGVPR---NVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
. ++.|...+..+...+... +....-.-.......|+.++|+..+++..+.
T Consensus 161 ~-------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 161 N-------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred C-------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8 778888888887643221 3334444566677788999999999888773
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.96 E-value=98 Score=32.70 Aligned_cols=126 Identities=7% Similarity=0.014 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHH
Q 042598 130 TDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209 (503)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~ 209 (503)
........|..+...|++++|-...-+|-. .+..-|.--+..++..++... ++.-++.. .-..+...|..++..|
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-n~~~eWe~~V~~f~e~~~l~~---Ia~~lPt~-~~rL~p~vYemvLve~ 465 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLG-NNAAEWELWVFKFAELDQLTD---IAPYLPTG-PPRLKPLVYEMVLVEF 465 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhc-chHHHHHHHHHHhccccccch---hhccCCCC-CcccCchHHHHHHHHH
Confidence 345667777777777888777666655521 355566666666666655443 33334432 1224567788777777
Q ss_pred HhCCChhHHHHHHHHHh----------cCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 210 CENGYASYAEKLVKDTA----------NEIF-------PDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~----------~~~~-------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
.. .+...-.++..+-. +... .+...-..|..-|...+++..|.+++-..++
T Consensus 466 L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 466 LA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 66 33332222222210 0011 1222334488888899999999998887663
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.70 E-value=8.2 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMER 191 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~ 191 (503)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666677777777777777776654
No 310
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.87 E-value=80 Score=31.11 Aligned_cols=45 Identities=4% Similarity=0.035 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCCCHHH---HHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH
Q 042598 332 LFYRMGEWGCHPNETT---FLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380 (503)
Q Consensus 332 l~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 380 (503)
+.+.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3344455565554322 123444344555543 44444555665554
No 311
>PF13934 ELYS: Nuclear pore complex assembly
Probab=76.78 E-value=44 Score=29.84 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=63.3
Q ss_pred HHHHHHHH--hcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHh
Q 042598 134 LSFFTDYF--GRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCE 211 (503)
Q Consensus 134 ~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~ 211 (503)
|...++++ -..+++++|.+.+-+-...++ --.-++..+...|+.+.|+.++..+.- ...+......++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLIPW--FPDKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HH
Confidence 33444444 344778888888855433222 223477778888999999999887652 22233344444444 66
Q ss_pred CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 042598 212 NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG 247 (503)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 247 (503)
++.+.+|..+-+...+... ...+..++..+....
T Consensus 153 ~~~v~EAf~~~R~~~~~~~--~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELR--RRLFEQLLEHCLEEC 186 (226)
T ss_pred cCCHHHHHHHHHhCchhhh--HHHHHHHHHHHHHHh
Confidence 7888888887776544211 345666666665443
No 312
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.72 E-value=42 Score=33.09 Aligned_cols=122 Identities=16% Similarity=0.090 Sum_probs=84.7
Q ss_pred HccCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 321 CKIRRSEDAI-KLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 321 ~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
...|+...|. +++..+....-.|+.+-..+.| ....|+++.+.+.+....+. +.....+-.++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3456666554 4555666655567776666655 46789999999988877653 345667888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 042598 400 MSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446 (503)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 446 (503)
...-+-|....++ +......-...--..|-++++...|++....+-
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9999988866554 333333223333455778999999988876543
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.65 E-value=40 Score=27.60 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=28.7
Q ss_pred HcCChhHHHHHHHHhHHhcCCCCCH---HhHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 175 RAGRPTQVLGFFERMERDYGFKRDK---DSLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
..++++++..+++.|.-- .|+. .++...+ +...|++++|..+|+++.+
T Consensus 22 ~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL---RPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHh---CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 366777777777776643 3432 3333333 4567777777777777655
No 314
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.23 E-value=89 Score=31.32 Aligned_cols=164 Identities=12% Similarity=0.070 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCh
Q 042598 231 PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV 310 (503)
Q Consensus 231 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 310 (503)
.|....-+++..+..+..+.-++.+..+|...| -+-..|-.++.+|...|. +.-..+++++.+..+ -|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n--------~~l~~lWer~ve~df-nDv 132 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGN--------EQLYSLWERLVEYDF-NDV 132 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCc--------hhhHHHHHHHHHhcc-hhH
Confidence 344455566666666666666677777776654 345566666677766644 455556665555432 233
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCCHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP------NETTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIGKKDY 383 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~ 383 (503)
+.-..+..-|-+ ++.+.+...|.+.... +.| -...|..++.. -..+.+....+...+.+. |..--...+
T Consensus 133 v~~ReLa~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~ 208 (711)
T COG1747 133 VIGRELADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLM 208 (711)
T ss_pred HHHHHHHHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHH
Confidence 333333333333 6666666666665443 111 11234444431 134455555555555543 444445555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
.-+-.-|....++++|++++..+.+.
T Consensus 209 qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 209 QDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHhccccCHHHHHHHHHHHhhh
Confidence 55666677777777777777766654
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.11 E-value=44 Score=27.78 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCH---HhHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDK---DSLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
.+.++.+++..+++.+..- .|.. .++... .+...|++++|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL---RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh---CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhc
Confidence 4556777777777777643 4443 233332 24667777777777777654
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=75.61 E-value=10 Score=21.46 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMER 191 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~ 191 (503)
.|..+-..|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666667777777777766654
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.58 E-value=5.1 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHH
Q 042598 412 NPDSETYDLLMTKWCAHNRVDKAN 435 (503)
Q Consensus 412 ~p~~~~~~~li~~~~~~g~~~~A~ 435 (503)
+-|...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345667777777777777777764
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=75.57 E-value=9.1 Score=21.65 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 416 ETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
..|..+-..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777888888888888888887654
No 319
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=75.17 E-value=75 Score=29.97 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=56.8
Q ss_pred HhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042598 361 VGEGDEMIDRMKSAGY----AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 361 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
.++|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... ..+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567888888777422 45666667777777888887766666666553 4577778889999988888888888
Q ss_pred HHHHHHHCC-Ccc
Q 042598 437 LFDEAVRNG-VEV 448 (503)
Q Consensus 437 ~~~~m~~~g-~~p 448 (503)
+++.....+ +++
T Consensus 223 ~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 223 LLDLLLSNDKVRS 235 (324)
T ss_dssp HHHHHHCTSTS-T
T ss_pred HHHHHcCCccccc
Confidence 888888754 443
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.58 E-value=52 Score=27.82 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHh-HHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDS-LRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
...|..-++ +++.+..++|+.-|..+.+. |..--... ---+-....+.|+...|...|+++..
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 334444443 34556666666666666654 33211111 11112233455666666666665543
No 321
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.44 E-value=93 Score=30.69 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-------HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC
Q 042598 233 DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN-------CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG 305 (503)
Q Consensus 233 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g 305 (503)
..++..++....+.++..+|.+.+.-+.-. .|+...-. .+-+..+. +.. ......+-..+++......
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~--DD~-~~Tklr~yL~lwe~~qs~D 372 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCE--DDE-SYTKLRDYLNLWEEIQSYD 372 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhc--chH-HHHHHHHHHHHHHHHHhhc
Confidence 457888888889999999998888877653 34332211 12222221 100 0000233444555555443
Q ss_pred CCCC-hhhHHH-HHHHHHccCC-HHHHHHHHHHHHHcCCCC-CHHHHHH----HHHHHHH---hCCHhHHHHHHHHHHHc
Q 042598 306 VPRN-VETFNV-LISNLCKIRR-SEDAIKLFYRMGEWGCHP-NETTFLV----LIKSLYQ---AARVGEGDEMIDRMKSA 374 (503)
Q Consensus 306 ~~~~-~~~~~~-li~~~~~~g~-~~~A~~l~~~m~~~g~~p-~~~t~~~----li~~~~~---~~~~~~a~~~~~~m~~~ 374 (503)
+... .+.|-. -..-+.+.|. -++|+++++...+- .+ |...-|. +=.+|.. ...+..-..+-+.+.+.
T Consensus 373 iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 373 IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3221 122211 1233555666 78899999988764 22 3332222 2233332 23344555555566667
Q ss_pred CCCCC----HHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 375 GYAIG----KKDYYEFLTR--LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 375 g~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
|+.|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|.-+.-++....++++|..++.. ++|
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~ 523 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPP 523 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCC
Confidence 87753 3456666665 4568999998876666555 589999999999999999999999999987 456
Q ss_pred Ccccccc
Q 042598 449 KPKEYRV 455 (503)
Q Consensus 449 ~~~~~~~ 455 (503)
+..+++.
T Consensus 524 n~~~~ds 530 (549)
T PF07079_consen 524 NERMRDS 530 (549)
T ss_pred chhhHHH
Confidence 6666653
No 322
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.24 E-value=1.2e+02 Score=31.88 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=43.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc---
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG-YAIGKKDYYEFLTRLCG--- 392 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~--- 392 (503)
...+.-.|+++.|++.+-+ ..+...|.+.+.+.+..|.-.+-.+... ..+.... -.+....+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556667888888888877 3344556777766665543332222211 3332211 11222567788888876
Q ss_pred cCCHHHHHHHHHHHHhC
Q 042598 393 IERIEQAMSVFEKMKTD 409 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~~~ 409 (503)
..+..+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 56788888888776643
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.53 E-value=11 Score=21.42 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777788888888888877665
No 324
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.35 E-value=75 Score=29.17 Aligned_cols=138 Identities=17% Similarity=0.105 Sum_probs=81.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCCCCHHHHHHH
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNET-------TFLVLIKSLYQAARVGEGDEMIDRMKSA----GYAIGKKDYYEF 386 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~l 386 (503)
+-..+.+++++|+..|.++...|+.-|.. |..-+...|...|+...--+......+. .-.-......++
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 34456778888888888888888776654 4445667777777766554444433221 112233456666
Q ss_pred HHHHHc-cCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHH----HHHHCCCccCcccccc
Q 042598 387 LTRLCG-IERIEQAMSVFEKMKTDGHNPD-----SETYDLLMTKWCAHNRVDKANALFD----EAVRNGVEVKPKEYRV 455 (503)
Q Consensus 387 i~~~~~-~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~ 455 (503)
|+.+.. ...++.-+++.....+...+-+ ...=.-+|..+.+.|.+.+|+.+.+ ++++.+-+|+..+...
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 766654 3456666665555443211111 1122457888999999999987655 4445555666555544
No 325
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.04 E-value=77 Score=29.15 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=64.7
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCCHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH---
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGE----WGCHPNETTFL-VLIKSLYQAARVGEGDEMIDRMKSAGYAIGK--- 380 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--- 380 (503)
....|..+..-||+.++.+.+.++.++..+ .|.+-|....- .|.-.|....-+++.++..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 456777788899999999999888876543 35665543222 2333445555577888888899998876554
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 381 -KDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 381 -~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
.+|..+-.+-.+ ++.+|-.++.+..
T Consensus 194 yK~Y~Gi~~m~~R--nFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRR--NFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHh
Confidence 345544444444 7888888877665
No 326
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.93 E-value=51 Score=30.16 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=60.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 315 VLISNLCKIRRSEDAIKLFYRMGE--WGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
.=|++++..+++.+++...-+--+ +.+.|.+.-..+ --|++.+....+.++-..-.+..-.-+...|..+++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347888999999988776555432 235554444443 4478999999888888887775333334458887777765
Q ss_pred -----cCCHHHHHHHH
Q 042598 393 -----IERIEQAMSVF 403 (503)
Q Consensus 393 -----~g~~~~A~~~~ 403 (503)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 68999998876
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.72 E-value=28 Score=30.53 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042598 204 LVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREM 259 (503)
Q Consensus 204 ~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 259 (503)
..++.+.+.+...+++...++-.+.-+-|..+-..++..+|-.|+|++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 34444555555555555544433333334444445555555555555555444433
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.33 E-value=46 Score=33.87 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=73.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
..+.|+++.|.++..+.. +..-|..|-++..+.+++..|.+.|..... |..|+-.+...|+-+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 356788888887776543 567888999999999999999998887655 45666777777887777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 400 MSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
..+-+...+.|. .|.-..+|...|+++++++++-+
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 777666666553 23445567778999998887755
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.20 E-value=7.8 Score=24.21 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=19.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 421 LMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5677888888888888888887654
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.10 E-value=37 Score=28.84 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHccC----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042598 290 LDSEAEKVLLDMEYNGVPRNV-ETFNVLISNLCKIR----R-------SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357 (503)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g----~-------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 357 (503)
++++|..-|++...-. |+- .++..+-.+|...+ + +++|.+.|++..+ ..|+..+|+.-+..+
T Consensus 50 miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~-- 123 (186)
T PF06552_consen 50 MIEDAISKFEEALKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA-- 123 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH--
Confidence 3455555555544422 332 34444444444332 2 3344444444444 467878887777665
Q ss_pred hCCHhHHHHHHHHHHHcCC
Q 042598 358 AARVGEGDEMIDRMKSAGY 376 (503)
Q Consensus 358 ~~~~~~a~~~~~~m~~~g~ 376 (503)
++|-+++.++.+.+.
T Consensus 124 ----~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ----AKAPELHMEIHKQGL 138 (186)
T ss_dssp ----HTHHHHHHHHHHSSS
T ss_pred ----HhhHHHHHHHHHHHh
Confidence 345666666666543
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.39 E-value=34 Score=30.06 Aligned_cols=77 Identities=17% Similarity=0.079 Sum_probs=55.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAIGKKDYYEFLTR 389 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~ 389 (503)
|.+..|+.+.+.+..++|+...++-++.. ..|..+-..++.-+|-.|++++|..-++..-+. ...+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888889999999888776653 235566677888999999999998888776653 233445667766654
No 332
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.31 E-value=1.5e+02 Score=31.86 Aligned_cols=221 Identities=12% Similarity=0.019 Sum_probs=111.3
Q ss_pred HhCCChhHHHHHHHHHhcCCCC-----CH---HHHHHHHHHH-HhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHH
Q 042598 210 CENGYASYAEKLVKDTANEIFP-----DD---KICDLLIKGW-CVDGKLDEAKRLAREMYRG----GFELGTVAYNCILD 276 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p-----~~---~~~~~li~~~-~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~ 276 (503)
....++++|..++.++....++ .. ..|+.+-... ...|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567888998888887542222 22 1344333222 2357888888887766542 22344555666666
Q ss_pred HHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhH---HHHH--HHHHccCC--HHHHHHHHHHHHHc--CCC----C
Q 042598 277 CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETF---NVLI--SNLCKIRR--SEDAIKLFYRMGEW--GCH----P 343 (503)
Q Consensus 277 ~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li--~~~~~~g~--~~~A~~l~~~m~~~--g~~----p 343 (503)
+..-.|+ +++|..+..+-.+..-.-|+..+ ..+. ..+...|+ .++.+..|...... .-+ +
T Consensus 506 a~~~~G~-------~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 506 AAHIRGE-------LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred HHHHhch-------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 6666677 66666666554432112233333 2222 22344553 23333334333222 111 2
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC----
Q 042598 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYAIGKKD--YYEFLTRLCGIERIEQAMSVFEKMKTDGHNP---- 413 (503)
Q Consensus 344 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---- 413 (503)
-..++..++.++.+ ++.+..-...-.+. ...+-... +..|+..+...|+.++|...++++......+
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 23455555555555 33322222221111 11122222 2367777888999999999988887543333
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHH
Q 042598 414 DSETYDLLMT--KWCAHNRVDKANALFDE 440 (503)
Q Consensus 414 ~~~~~~~li~--~~~~~g~~~~A~~~~~~ 440 (503)
+...-...+. -....|+.+++.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222 23456777777666555
No 333
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.14 E-value=17 Score=33.96 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=40.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
+-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|+.=....+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357888999999999987665 345 778888888888888888777665555443
No 334
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.86 E-value=10 Score=25.79 Aligned_cols=45 Identities=9% Similarity=0.133 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 397 EQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
+++.++++.+... .-|..-.-.+|.+|...|++++|.++++++.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444321 22444444566666666666666666666543
No 335
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=70.46 E-value=1.2e+02 Score=30.31 Aligned_cols=99 Identities=8% Similarity=0.133 Sum_probs=67.3
Q ss_pred CCCCHHHH-HHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHH-hCCCCCCH
Q 042598 341 CHPNETTF-LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL---CGIERIEQAMSVFEKMK-TDGHNPDS 415 (503)
Q Consensus 341 ~~p~~~t~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~-~~g~~p~~ 415 (503)
..|+..|+ +.++.-+...|-..+|..++..+... .+++...|..+|..- ..+| +..+.+.++.|. ..| .|+
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~ 530 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADS 530 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CCh
Confidence 34565555 35667777888888888888888774 346677777777653 2344 777778888776 445 677
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 416 ETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 416 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
..|--.+.-=...|..+.+-.++.+..+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 7777766666677887777777665543
No 336
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.39 E-value=5.3 Score=23.20 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=10.4
Q ss_pred CHHhHHHHHHHHHhCCChhHH
Q 042598 198 DKDSLRLVVEKLCENGYASYA 218 (503)
Q Consensus 198 ~~~~~~~ll~~~~~~g~~~~a 218 (503)
|...|+.+-..|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344455555555555555444
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.38 E-value=72 Score=27.69 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=65.0
Q ss_pred HHHhCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 042598 355 LYQAARVGEGDEMIDRMKSAGYAIG-----KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD-SETYDLLMTKWCAH 428 (503)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 428 (503)
+.+.|++++|..-|...++. +++. ...|..-..++.+.+.++.|++--.+..+. .|+ ......-..+|-+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHhh
Confidence 34566666666666666653 1111 123443444566667777777666665543 231 11122223467777
Q ss_pred CChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHHHHHhhh
Q 042598 429 NRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARKRRRLK 487 (503)
Q Consensus 429 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 487 (503)
..+++|++=|+.+.+.. |...-.. ..+..- ........+.|.+.|..+-+.+.
T Consensus 182 ek~eealeDyKki~E~d--Ps~~ear---~~i~rl-~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD--PSRREAR---EAIARL-PPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhHHHHHHHHHHHHHhC--cchHHHH---HHHHhc-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888887765 3332111 111111 12333455666667766655443
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.32 E-value=10 Score=21.24 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=17.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHh
Q 042598 168 SCIDRLVRAGRPTQVLGFFERMERD 192 (503)
Q Consensus 168 ~li~~~~~~g~~~~A~~~f~~m~~~ 192 (503)
.+..+|.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666777788888887777765
No 339
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.18 E-value=81 Score=28.16 Aligned_cols=27 Identities=4% Similarity=0.105 Sum_probs=16.1
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHcCCC
Q 042598 351 LIKSLYQAARVGEGDEMIDRMKSAGYA 377 (503)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (503)
+...-+..+++.+|..+|+++....+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333345566677777777776665443
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.66 E-value=6.5 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=9.2
Q ss_pred HHHHHHHHcCChhHHHHHH
Q 042598 168 SCIDRLVRAGRPTQVLGFF 186 (503)
Q Consensus 168 ~li~~~~~~g~~~~A~~~f 186 (503)
.+...+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444445555555555444
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.63 E-value=12 Score=34.89 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=53.6
Q ss_pred HHHHHhCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 042598 353 KSLYQAARVGEGDEMIDRMKSAGYAI-GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRV 431 (503)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 431 (503)
.-|.+.|.+++|...|..... +.| |.+++..-..+|.+..++..|+.=....... | ...+.+|.+.|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHH
Confidence 457899999999999987766 345 7788888888899988888776655554421 1 2345666665555
Q ss_pred HHHHHHHHHHH
Q 042598 432 DKANALFDEAV 442 (503)
Q Consensus 432 ~~A~~~~~~m~ 442 (503)
.+++....+..
T Consensus 175 R~~Lg~~~EAK 185 (536)
T KOG4648|consen 175 RESLGNNMEAK 185 (536)
T ss_pred HHHHhhHHHHH
Confidence 44444444443
No 342
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.11 E-value=85 Score=28.02 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 412 NPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 412 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
.|.+.....++..|.+ +++++|.+++.++.+.|+.|.
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 3445555555554443 456666666666666665553
No 343
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.08 E-value=62 Score=26.45 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWG-----CHPNETTFLVLIKSLYQAAR-VGEGDEMIDRMKSAGYAIGKKDYYEF 386 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~l 386 (503)
.|.++.-....+.....+.+++.+..-. -.-+..+|.+++.+.++..- .--+..+|+.+++.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555442110 01123344444444433333 22344444444444444444444444
Q ss_pred HHHHHc
Q 042598 387 LTRLCG 392 (503)
Q Consensus 387 i~~~~~ 392 (503)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 444433
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.55 E-value=99 Score=28.58 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=32.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
+.....|..+|.+.+|.++.+...... +.+...|-.|+..++..|+--.|..-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334455666666666666666555432 3344555566666666666555555554443
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.28 E-value=21 Score=25.50 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=25.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCHhHHHHH
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNE--TTFLVLIKSLYQAARVGEGDEM 367 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~ 367 (503)
..++.++|+..|....+.-..+.. .++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665554222221 4555666666666666655443
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.58 E-value=1e+02 Score=28.36 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHH-------HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTVA-------YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV 315 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~-------~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (503)
..+.+++++|+..|.++...|+..|..+ ...+...|...|+..+--..+....+.+.+.-. +..+-...+
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk---~k~~Kiirt 89 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK---PKITKIIRT 89 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---hhHHHHHHH
Confidence 3445666666666666666665555433 234455555555543211112222222222211 223334445
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 316 LISNLCKI-RRSEDAIKLFYRMGEWGCHPN-----ETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 316 li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
+|.-+-.. ..++..+.+.....+-..+-. ...=..++..+.+.|.+.+|..+...+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55544332 234445555444433211111 1122456777888888888877766543
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.42 E-value=20 Score=25.66 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=28.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPD--SETYDLLMTKWCAHNRVDKANAL 437 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 437 (503)
.....++|+..|....+.-..+. ..++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776665422221 14566677777777777776655
No 348
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.38 E-value=32 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=21.0
Q ss_pred ccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 042598 157 NKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMER 191 (503)
Q Consensus 157 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 191 (503)
+...|++.+..+-+.+|-+.+|+..|.++|+-++.
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666554
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.15 E-value=17 Score=22.67 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=17.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 042598 239 LIKGWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 239 li~~~~~~g~~~~a~~~~~~m~~~g 263 (503)
+-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567777777777777777777543
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.08 E-value=73 Score=26.15 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=33.6
Q ss_pred hCCChhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042598 211 ENGYASYAEKLVKDTAN--EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 211 ~~g~~~~a~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 263 (503)
..++.+++..+++.|.- --.+...++...+ +...|+|++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 47788888888887743 1123344444443 456788888888888887654
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.36 E-value=57 Score=24.67 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
.++|..+-+-+...+-. ...+--+-+..+...|++++|..+.+.+ ..||...|..+-. .+.|.-++...-+..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45666666655553311 2222222344567778888887777655 4677777766544 366666666666666
Q ss_pred HHHcC
Q 042598 371 MKSAG 375 (503)
Q Consensus 371 m~~~g 375 (503)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66554
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.66 E-value=17 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=16.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355555666666677777666666544
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.46 E-value=69 Score=29.37 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=54.8
Q ss_pred HHHHHhcCCChHHHHHHHHhc---cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHH---
Q 042598 137 FTDYFGRRKDFKAIHDFLVDN---KEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLC--- 210 (503)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~--- 210 (503)
=|.+++..++|.++..++.+. ..+..+.+...-|-.|.+.|.+..+.++-..-.+. .-..+..-|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHH
Confidence 357778888888887776554 22345566666677788888888887777666553 22223344666665554
Q ss_pred --hCCChhHHHHHH
Q 042598 211 --ENGYASYAEKLV 222 (503)
Q Consensus 211 --~~g~~~~a~~~~ 222 (503)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777777665
No 354
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.92 E-value=54 Score=25.25 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 235 ICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 235 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
-|..++.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 355
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.76 E-value=69 Score=24.68 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
.-|..++.-|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3688899999999999999999998876
No 356
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.46 E-value=2.1e+02 Score=30.13 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHh---CCHhHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG-CHPNETTFLVLIKSLYQA---ARVGEGDE 366 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~---~~~~~a~~ 366 (503)
++.|.+.+-+ ..+...|.+++-..+.-|.-.+-.+... ..+.... -.|...-+..||..|++. .+..+|.+
T Consensus 274 FE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~ 348 (613)
T PF04097_consen 274 FEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITDPREALQ 348 (613)
T ss_dssp HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HHHHHH
T ss_pred HHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHH
Confidence 6666666654 1122355666655555444332222221 2221110 111125677788777763 45666766
Q ss_pred HHHHHHH
Q 042598 367 MIDRMKS 373 (503)
Q Consensus 367 ~~~~m~~ 373 (503)
++-.+..
T Consensus 349 Y~~li~~ 355 (613)
T PF04097_consen 349 YLYLICL 355 (613)
T ss_dssp HHHGGGG
T ss_pred HHHHHHH
Confidence 6665544
No 357
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=62.16 E-value=1.4e+02 Score=28.07 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 042598 291 DSEAEKVLLDMEYNGV----PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDE 366 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 366 (503)
..+|.+.|......+. ..+...-..++....+.|..++-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 6788889988877422 345555666777778888876655555555543 367777889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 367 MIDRMKSAGYAIGKKDYYEFLTRLCGIER--IEQAMSVFE----KMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 367 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~----~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
+++.+...+..++... ..++.++...+. .+.+++++. .+.+. +..+......++..+...-..++-.+-+++
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 9999888542333333 344445543333 377777655 33322 233333555666655443333343444444
Q ss_pred HH
Q 042598 441 AV 442 (503)
Q Consensus 441 m~ 442 (503)
+.
T Consensus 301 f~ 302 (324)
T PF11838_consen 301 FF 302 (324)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 358
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.82 E-value=35 Score=21.73 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTVAYNCILD 276 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 276 (503)
..+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3467788888888999988888888888777764
No 359
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.78 E-value=1.3e+02 Score=27.73 Aligned_cols=131 Identities=9% Similarity=0.088 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 042598 291 DSEAEKVLLDMEY-NGVPRNVETFNVLISNLCKIR--RSEDAIKLFYRMGE-WGCHPNETTFLVLIKSLYQAARVGEGDE 366 (503)
Q Consensus 291 ~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~a~~ 366 (503)
+.+|.++|+.... ..+-.|..+...+++...... ....-.++.+-+.. .|-.++..+...+|..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 5566666663322 223356666666666655422 12222233333332 2467778888889999999999999999
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH-----HHhCCCCCCHHHHHHH
Q 042598 367 MIDRMKSA-GYAIGKKDYYEFLTRLCGIERIEQAMSVFEK-----MKTDGHNPDSETYDLL 421 (503)
Q Consensus 367 ~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~l 421 (503)
++...... +..-|..-|..+|+.....|+..-..+++++ +++.|+..+...-..|
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 88887765 5667888899999999999998877777653 2344455444444443
No 360
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.39 E-value=2.5e+02 Score=30.70 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcC-CCC-CHHhHHHHHHHHHhCCCh--hHHHHHHHHHhc-----C--CCCC-
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYG-FKR-DKDSLRLVVEKLCENGYA--SYAEKLVKDTAN-----E--IFPD- 232 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-~~~-~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~-----~--~~p~- 232 (503)
-|..|+..|...|+.++|+++|.+...... ... -...+.-++.-+.+.+.. +-.+++-+...+ + +.-+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 378999999999999999999999887310 000 112233355555555543 333333222211 0 0011
Q ss_pred -H---HHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 042598 233 -D---KICD-LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKL 281 (503)
Q Consensus 233 -~---~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 281 (503)
. .+.+ ..+-.|......+-+..+++.+....-..+....+.++.-|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 1 0111 13445667778888999999998776667788888888888764
No 361
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.38 E-value=22 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
-.-.+|.+|.+.|++++|.++++++
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334555555555555555555544
No 362
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.27 E-value=1.1e+02 Score=26.42 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=89.7
Q ss_pred CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042598 194 GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-----EIFP----DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGF 264 (503)
Q Consensus 194 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 264 (503)
|...|...+|.++..+.+..-...-...+-.++. +..+ |......=+..|-..|||.+.-.+|-.....--
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gce 82 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGCE 82 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhcC
Confidence 5566777777777666554332222222222221 2222 233344455666677777766666655443211
Q ss_pred CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 042598 265 ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (503)
.++ -+=..++ --|+.+..+.++ ...+-|.....+-++.-..+++-+.|-
T Consensus 83 ~~~-----dlq~~~~------------~va~~Ltkd~Kd----k~~vPFceFAetV~k~~q~~e~dK~~L---------- 131 (233)
T PF14669_consen 83 KFA-----DLQRFCA------------CVAEALTKDSKD----KPGVPFCEFAETVCKDPQNDEVDKTLL---------- 131 (233)
T ss_pred CHH-----HHHHHHH------------HHHHHHHhcccc----cCCCCHHHHHHHHhcCCccchhhhhhh----------
Confidence 111 1100010 023333333332 233455566666666555555433321
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 042598 345 ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA--------------IGKKDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 345 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
..+=.+++..|-+..++.++.++++.|.+..+. +-....|.....|.+.|.+|.|..+++
T Consensus 132 GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 132 GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 122245677778888888888888888764332 233445555555555666666655554
No 363
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.98 E-value=33 Score=21.83 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=14.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 352 (503)
.|-..++..++++|.+.|+.-+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344445555555555555544444444443
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.46 E-value=1.4e+02 Score=27.60 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHH------cC-----ChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHH
Q 042598 161 LGPKTLASCIDRLVR------AG-----RPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVK 223 (503)
Q Consensus 161 ~~~~~~~~li~~~~~------~g-----~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 223 (503)
.....|.+.+.++.. +| -..+|+++|.-+.++.| -.++-+-++.++....+..+|...+.
T Consensus 120 ~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkg---k~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 120 TAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKG---KEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred cchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcC---CcccHhHHHHHHccccchhhHHHHHH
Confidence 345566666666652 22 24578999998887622 33444566777777777777766554
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.32 E-value=50 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 229 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
..|+..+|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666666666666666666555554
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.96 E-value=2e+02 Score=28.35 Aligned_cols=107 Identities=8% Similarity=0.008 Sum_probs=50.5
Q ss_pred HHHHHHhCCCCCChhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 042598 297 VLLDMEYNGVPRNVET--FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN---ETTFLVLIKSLYQAARVGEGDEMIDRM 371 (503)
Q Consensus 297 ~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m 371 (503)
+++.+.+.|..++... -.+.+...+..|+.+-+..++ +.|..++ ..-.+.+. ..+..|+.+ +.+.+
T Consensus 117 iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~L 187 (413)
T PHA02875 117 IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKML 187 (413)
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHH
Confidence 3333444554443321 122334445567665444333 3444333 22233333 344556654 45556
Q ss_pred HHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 042598 372 KSAGYAIGKKD---YYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE 416 (503)
Q Consensus 372 ~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (503)
.+.|..++... ..+.+...+..|+.+- .+.+.+.|..++..
T Consensus 188 l~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n~~ 231 (413)
T PHA02875 188 LDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCNIM 231 (413)
T ss_pred HhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcchH
Confidence 66677665432 1234444455666543 44455667666643
No 367
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.92 E-value=11 Score=30.13 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=21.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (503)
..|.-.+|..+|++|.+.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34556677788888888877776 467776543
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.89 E-value=78 Score=25.10 Aligned_cols=43 Identities=7% Similarity=0.175 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 331 KLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
+-+..+...++.|+......-+.+|.+.+++..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444455666666666666666666666666666665554
No 369
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=57.32 E-value=1.3e+02 Score=26.01 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=15.4
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 042598 426 CAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~ 444 (503)
.+.|+++.|...++-|.+.
T Consensus 132 l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3678999999999988753
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.87 E-value=48 Score=28.62 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=35.1
Q ss_pred HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 175 RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
..++.+......+...+.....|+..+|..++.++...|+.++|.++..++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44554444444444444334468888888888888888888888887777655
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.10 E-value=2.8e+02 Score=29.20 Aligned_cols=170 Identities=11% Similarity=0.007 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhCCCCCCCHH--HHHHHHHHH-hcCCChHHHHHHHHhccC---CCCH-----HHHHHHHHHHHHcCChhH
Q 042598 113 AILGFNHWLTQNANFSHTDE--TLSFFTDYF-GRRKDFKAIHDFLVDNKE---VLGP-----KTLASCIDRLVRAGRPTQ 181 (503)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~-~~~~~~~~a~~~~~~~~~---~~~~-----~~~~~li~~~~~~g~~~~ 181 (503)
.|+.-++.+.++..+.|... ++-.+...+ ....+++.|...+.+.-. .++. .....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 55666666664455555443 333344444 467788999998886521 1221 12335566666666655
Q ss_pred HHHHHHHhHHhcCC---CCCHHhHHHH-HHHHHhCCChhHHHHHHHHHhc----CCCCCHHHHHHHHHHHHh--cCCHHH
Q 042598 182 VLGFFERMERDYGF---KRDKDSLRLV-VEKLCENGYASYAEKLVKDTAN----EIFPDDKICDLLIKGWCV--DGKLDE 251 (503)
Q Consensus 182 A~~~f~~m~~~~~~---~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~----~~~p~~~~~~~li~~~~~--~g~~~~ 251 (503)
|.+..++..+...- .+=...|..+ +..+...+++..|.+.++.+.. ...|-..++-.++.+... .+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888886654221 1122333333 3333344799999999988743 233445555566666553 455677
Q ss_pred HHHHHHHHHHCCC---------CcCHHHHHHHHHHHHhcCC
Q 042598 252 AKRLAREMYRGGF---------ELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 252 a~~~~~~m~~~g~---------~~~~~~~~~li~~~~~~g~ 283 (503)
+.+..+++..... .|-..+|..+++.++....
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~ 238 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQ 238 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 7777777643221 3356777888877665433
No 372
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.98 E-value=2.1e+02 Score=27.87 Aligned_cols=15 Identities=7% Similarity=0.370 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHhC
Q 042598 395 RIEQAMSVFEKMKTD 409 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~ 409 (503)
++...++++++++.+
T Consensus 319 ky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 319 KYASCLELLREIKPR 333 (466)
T ss_pred hHHHHHHHHHHhccc
Confidence 677777777766543
No 373
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.73 E-value=1.2e+02 Score=24.86 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=65.5
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHHHhCCHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCC-HHHHHHHHHHH
Q 042598 335 RMGEWGCHPNE--TTFLVLIKSLYQAARVGEGDEMIDRMKSAG-----YAIGKKDYYEFLTRLCGIER-IEQAMSVFEKM 406 (503)
Q Consensus 335 ~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 406 (503)
.|.+.+..++. ...++++......+++.....+++.+.... -..+...|++++.+.++... ---+..+|.-|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34555555554 345777777777788887777777664311 12455678888888876555 44566778888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChH
Q 042598 407 KTDGHNPDSETYDLLMTKWCAHNRVD 432 (503)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~~g~~~ 432 (503)
++.+.+.+..-|..+|.++.+....+
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 87777888888888888887753333
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.22 E-value=94 Score=32.18 Aligned_cols=90 Identities=9% Similarity=0.045 Sum_probs=62.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCHh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 042598 315 VLISNLCKIRRSEDAIKLFYRMGEW--GCHPNETTFLVLIKSLYQAARVG------EGDEMIDRMKSAGYAIGKKDYYEF 386 (503)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~~~~~~~~~l 386 (503)
+++.+|..+|++..+.++++..... |-+-=...||..|+...+.|.++ .+.+.++.. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7899999999999999999998764 43434567888888888988765 334444433 456688888888
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 042598 387 LTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~m~ 407 (503)
+.+-...-+-....-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 877665333334444454444
No 375
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.60 E-value=1.9e+02 Score=26.81 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHHHH----cCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---
Q 042598 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKS----AGYAIGKKDYYE-FLTRLCGIERIEQAMSVFEKMKTDGHNPDS--- 415 (503)
Q Consensus 344 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--- 415 (503)
-...+..+...|++.++.+.+.+...+..+ .|.+.|+...-+ |--.|....-+++-++..+.|.++|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 346677788999999999999888776544 377777654333 223355555678888889999998865443
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 416 -ETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 416 -~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+|.-+... ...++.+|-.++-+...
T Consensus 194 yK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKM--MRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHH--HHHhhHHHHHHHHHHhc
Confidence 234333222 22467777777766553
No 376
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.31 E-value=1.8e+02 Score=27.53 Aligned_cols=85 Identities=14% Similarity=0.303 Sum_probs=55.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHH--HHHHHHHhCCHhHHHHHHHHHHH-----cCCCCCHHH-
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEW---GCHPNETTFLV--LIKSLYQAARVGEGDEMIDRMKS-----AGYAIGKKD- 382 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~- 382 (503)
..++...-+.++.++|++.++++.+. --.|+.+.|.. +..++...|+..++.+++.+..+ .|+.+++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34455556667899999999998764 34567776654 45566678999999999988877 577775543
Q ss_pred HHHHHHHHHc-cCCHHH
Q 042598 383 YYEFLTRLCG-IERIEQ 398 (503)
Q Consensus 383 ~~~li~~~~~-~g~~~~ 398 (503)
|+.+-.-|.+ .|++..
T Consensus 159 fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 4444333333 444443
No 377
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.99 E-value=99 Score=23.46 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 389 RLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455666666666655542 566666655533 34455555555555555554
No 378
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.72 E-value=2.2e+02 Score=27.33 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=41.7
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHCC
Q 042598 389 RLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK----WCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g 445 (503)
.+.+-++..-|......|.++.+..-..||.+|=-. .++.+..++|.+..-+|.+.|
T Consensus 286 rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 286 RFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 355677888888888888877666666777776433 345577788888888888876
No 379
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.23 E-value=65 Score=29.19 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=15.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHhH
Q 042598 168 SCIDRLVRAGRPTQVLGFFERME 190 (503)
Q Consensus 168 ~li~~~~~~g~~~~A~~~f~~m~ 190 (503)
.+...|.+.|++++|.++|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45556666777777777776664
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.69 E-value=3.1e+02 Score=28.81 Aligned_cols=196 Identities=8% Similarity=-0.022 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHhccCCC--CHHHHHHHHHHHH-HcCChhHHHHHHHHhHHhcCCCCCH-----H
Q 042598 129 HTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVL--GPKTLASCIDRLV-RAGRPTQVLGFFERMERDYGFKRDK-----D 200 (503)
Q Consensus 129 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~~~~~~~~~-----~ 200 (503)
.+...|..+|..-.++ ...++.+....| +..++-.+...+. ...+++.|+..+++.... .-.++. .
T Consensus 28 ~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l-~~~~~~~d~k~~ 101 (608)
T PF10345_consen 28 EQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILL-CERHRLTDLKFR 101 (608)
T ss_pred hhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchHHHHHH
Confidence 4556677776654321 222222333333 3345556666665 678899999999876432 111222 1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHhc---C--CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHH
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDTAN---E--IFPDDKICDLL-IKGWCVDGKLDEAKRLAREMYRGG---FELGTVAY 271 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~--~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~ 271 (503)
+-..++..+.+.+... |...+++..+ . ..+-...|..+ +..+...++...|.+.++.+...- ..+-..++
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 2235566666666555 8888887533 1 11222333334 333334489999999998887532 24455666
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--ccCCHHHHHHHHHHH
Q 042598 272 NCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG---------VPRNVETFNVLISNLC--KIRRSEDAIKLFYRM 336 (503)
Q Consensus 272 ~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g---------~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m 336 (503)
-.++.+........ .+++.+..+.+.... ..|-..+|..+++.++ ..|+++.+...++++
T Consensus 181 ~~l~~~~l~l~~~~-----~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 181 ASLSEALLHLRRGS-----PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHhcCCC-----chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66776666544321 344555554442211 2345677877777654 567776776666555
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.11 E-value=31 Score=31.94 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=33.5
Q ss_pred CChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVE-TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352 (503)
Q Consensus 308 ~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 352 (503)
+|.. -||..|..-.+.|++++|+.+++|.++.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3443 45688888899999999999999999888775556655443
No 382
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.79 E-value=1.8e+02 Score=25.82 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCHHHHHH-HHHHHhcCCChHHHHHHHHhccCCC---CHHHHH--HHHHHHHHcCChhHHHHHHHHhH
Q 042598 129 HTDETLSF-FTDYFGRRKDFKAIHDFLVDNKEVL---GPKTLA--SCIDRLVRAGRPTQVLGFFERME 190 (503)
Q Consensus 129 ~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~--~li~~~~~~g~~~~A~~~f~~m~ 190 (503)
++..-++. +|+.+...|..+.|..+-.+.+..+ |...++ .-|......|++++|++..+.+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 33333333 3344444454455544445555433 333333 33455566666666666666554
No 383
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.76 E-value=57 Score=32.18 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc------CCC---CCHHHHHHHHHHHHc-
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA------GYA---IGKKDYYEFLTRLCG- 392 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~---~~~~~~~~li~~~~~- 392 (503)
-+.+++-.++++.+.+.| .+| ....-|++|.+.+++++|...+++-.+. |++ ....+...++...-.
T Consensus 67 ~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~P 143 (480)
T TIGR01503 67 VALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLP 143 (480)
T ss_pred CCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCC
Confidence 355788888888888875 233 3334568888999999998888877653 221 223344444444311
Q ss_pred ---cCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHH-------HHHHCCCccCcccccchHHH
Q 042598 393 ---IERIEQAMSVFEKMKTDGHN---PDSETYDLLMTKWCAHNRVDKANALFD-------EAVRNGVEVKPKEYRVDPRY 459 (503)
Q Consensus 393 ---~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~-------~m~~~g~~p~~~~~~~l~~~ 459 (503)
.+--.+|..+++-+...|+. -...+||. -|.+.=-.++++..|+ ...+.|+..+..+|..+...
T Consensus 144 vQvRHGtpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgt 220 (480)
T TIGR01503 144 LQIRHGTPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGT 220 (480)
T ss_pred eeccCCCCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCC
Confidence 12234566666666666542 23344442 2333333444444443 33456888788888765433
Q ss_pred hcCchhhhcccccccHHHHHHHHHHhhhhhhhccc
Q 042598 460 LKKPIAVKKGKKRETLPEKMARKRRRLKQIRLSFV 494 (503)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~ki~~~~~ 494 (503)
+. ......+..++|-+.-...+++.|.++|-
T Consensus 221 Lv----PPsisiav~ilE~Lla~eqGVksisvgy~ 251 (480)
T TIGR01503 221 LV----PPSISNAIGIIEGLLAAEQGVKNITVGYG 251 (480)
T ss_pred cc----ChHHHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 33 34455566666666666666666666653
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.61 E-value=33 Score=31.76 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 042598 229 IFPDDKI-CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNC 273 (503)
Q Consensus 229 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 273 (503)
+.||..+ |+..|..-.+.||+++|+.+++|.++.|+.--..+|-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4456554 56888888899999999999999998887654444433
No 385
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.43 E-value=1e+02 Score=30.59 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC
Q 042598 244 CVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV 306 (503)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~ 306 (503)
...|+++.+.+.+....+. +.....+...+++...+.|+ +++|..+-.-|....+
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r-------~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR-------WREALSTAEMMLSNEI 388 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh-------HHHHHHHHHHHhcccc
Confidence 3445555555555443321 12233444445555555544 4455555544444433
No 386
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=49.70 E-value=2.5e+02 Score=27.20 Aligned_cols=102 Identities=8% Similarity=0.046 Sum_probs=69.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHhCCHhHHHHHHHHHHHcCCC-CCH
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVL------------IKSLYQAARVGEGDEMIDRMKSAGYA-IGK 380 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~-~~~ 380 (503)
..+...+-..|++++|.+++.+.. ..||.++ ++.|...+++-.|.-+-+.+...-+. ||.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345567788999999999987753 3455544 56677778888887777776654332 443
Q ss_pred -----HHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 042598 381 -----KDYYEFLTRLCGIERIEQAMSVFEKMKTDG-HNPDSETYDLLM 422 (503)
Q Consensus 381 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li 422 (503)
.-|+.+|......+.+-.+.+.++..-..| +.-|..-|...+
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 358888888889999999999999887654 233333344333
No 387
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.67 E-value=1.7e+02 Score=25.31 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=61.8
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHH-----HHHHHhCCChhHHHHHHHHHhcCCCCCHH--HHHHHHH
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLV-----VEKLCENGYASYAEKLVKDTANEIFPDDK--ICDLLIK 241 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~l-----l~~~~~~g~~~~a~~~~~~~~~~~~p~~~--~~~~li~ 241 (503)
+...+..+|++++|+.-+++-... +....+..+ -....+.|.+|+|+.+++.... ++-. ....--+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---~~w~~~~~elrGD 167 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE---ESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---ccHHHHHHHHhhh
Confidence 345677889999999988877643 333344433 3566788999999999887655 2221 2333456
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 042598 242 GWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g 263 (503)
.+...|+-++|..-|.+....+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHcc
Confidence 7888899999999999888765
No 388
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=48.98 E-value=28 Score=18.28 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.|..+...+...|++++|...+++.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4666777788888888888888777653
No 389
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.65 E-value=3.6e+02 Score=28.61 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=50.1
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCC
Q 042598 116 GFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGF 195 (503)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 195 (503)
++-..+.+..+.+.....=...+..+++.+++..+..+...- +.+...-.....+....|+.++|.+....+-.. |
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-g- 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-G- 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-
Confidence 444444443444333333344555566666666666633221 245555556666666677766665555554432 2
Q ss_pred CCCHHhHHHHHHHHHhCCChh
Q 042598 196 KRDKDSLRLVVEKLCENGYAS 216 (503)
Q Consensus 196 ~~~~~~~~~ll~~~~~~g~~~ 216 (503)
......++.+++.+.+.|...
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCC
Confidence 223455666666666555443
No 390
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.00 E-value=4.4e+02 Score=29.45 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHccC--CHHHHHHHHHHHHHc
Q 042598 310 VETFNVLISNLCKIR--RSEDAIKLFYRMGEW 339 (503)
Q Consensus 310 ~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~ 339 (503)
..-...+|.+|++.+ ++++|+.+..++++.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344566777888877 788888888888765
No 391
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.80 E-value=1.8e+02 Score=27.24 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 330 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.++|+.|.+.++.|.-..|.-+--.+++.=.+.+...+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45667777777777776666666666666666777777777665
No 392
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.24 E-value=3.6e+02 Score=28.72 Aligned_cols=185 Identities=9% Similarity=0.034 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCh----------hhHHHHHHH
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV----------ETFNVLISN 319 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------~~~~~li~~ 319 (503)
++-...+.+|+++=-.|++.+-.++++..+...+..+ ++...++.+.++.- ||. ..|.-.++-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQd----Y~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNR 252 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQD----YDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNR 252 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccc----hHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcc
Confidence 3444567777766445655444444444333333221 66777777777652 432 123333333
Q ss_pred HHccCCHHHHHHHHHHHHHc--CCCCCHHHHHH-------HHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH---HHHHHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEW--GCHPNETTFLV-------LIKSLYQAARVGEGDEMIDRMKSAGYAIGKK---DYYEFL 387 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~-------li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li 387 (503)
--+-|+-++|++..-.|.+. .+.||..+... +-+.|...+..+.|.+.|++.-+ +.|+.. .+..|+
T Consensus 253 RNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL 330 (1226)
T KOG4279|consen 253 RNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLL 330 (1226)
T ss_pred cCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHH
Confidence 34557788888888777654 46677644321 22334556667778888877655 344443 233333
Q ss_pred HHHHccCCHHHHHHH------HHHHH-hCCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 388 TRLCGIERIEQAMSV------FEKMK-TDGHNPDSETYD---LLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~------~~~m~-~~g~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.+-++ .++.-.++ +..+. ++|.--....|. ..+.+-.-++++.+|.+.-+.|-+..
T Consensus 331 ~aaG~--~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 331 RAAGE--HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred HHhhh--hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC
Confidence 33332 12221111 11111 222111111121 22344455678888888877777654
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.42 E-value=4.4e+02 Score=28.97 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChh
Q 042598 235 ICDLLIKGWCVDGKLDEAKRLAREMYRGG---FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE 311 (503)
Q Consensus 235 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 311 (503)
-|..|+..|...|+.++|++++.+..+.. -.--..-+--+++.+.+.+... .+-+.+.-+........-...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~-----~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAEN-----LDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccc-----hhHHHHHhhhhhccCchhhee
Confidence 48889999999999999999999988732 1111223344666666665521 223333333222221110001
Q ss_pred hHH------------HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 042598 312 TFN------------VLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358 (503)
Q Consensus 312 ~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 358 (503)
.++ --+-.|......+-+..+++.+....-.++..-.+.++.-|+..
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 111 12345677788888999999998776666777777777777643
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.33 E-value=22 Score=28.43 Aligned_cols=29 Identities=31% Similarity=0.459 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKS 354 (503)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 354 (503)
|.-.+|..+|++|.+.|-.|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444566777777777777665 44555544
No 395
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.13 E-value=3.7e+02 Score=28.00 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=45.5
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 388 (503)
+...|..-+..+..+++.. ....+++...-...+...-..++..|.+.|..+.+.++.+.+-..-+ ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3445666555555444322 44444444443334566778888999999999999998887755322 2345666677
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 042598 389 RLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~ 408 (503)
.+.++|+.+.+-.+...+.+
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHH-----------------
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77888887776666555543
No 396
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=45.70 E-value=2.2e+02 Score=25.28 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.||--+..-+...|++++|..+|+-.+.
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3444455555555555555555555444
No 397
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.60 E-value=81 Score=24.33 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=16.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC
Q 042598 386 FLTRLCGIERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g 410 (503)
+|+.+.+|...++|+++++-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3455566777777777777777665
No 398
>PHA03100 ankyrin repeat protein; Provisional
Probab=45.17 E-value=3.2e+02 Score=27.41 Aligned_cols=247 Identities=12% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHH-----HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 168 SCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEK-----LCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 168 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
+.+...++.|+.+-+..+++.=. .+..........+.. .+..|..+-+.-+++.-..--..|....+.+..+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~g~---~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A 113 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDNGA---DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYA 113 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHcCC---CCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHH
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhH--HHHHH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTVAYN--CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETF--NVLIS 318 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~ 318 (503)
.. ....-.++++.+.+.|..++..... +.+...++.|. .-.++.+.+.+.|..++.... .+-+.
T Consensus 114 ~~---~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---------~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 114 IS---KKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNK---------IDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred Hh---cccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC---------ChHHHHHHHHHCCCCcccccCCCCCHHH
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 042598 319 NLCKIRRSEDAIKLFYRMGEWGCHPNETTF--------LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK--KDYYEFLT 388 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~ 388 (503)
..+..| -.++.+.+.+.|..++.... .+.+...+..|+ ...++.+.+.+.|..++. ..-.+-+.
T Consensus 182 ~A~~~~----~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~ 255 (480)
T PHA03100 182 IAVEKG----NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH 255 (480)
T ss_pred HHHHhC----CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHH
Q 042598 389 RLCGIERIEQAMSVFEKMKTDGHNPDSETYD--LLMTKWCAHNRVDKANALFD 439 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~ 439 (503)
..+..|+ .++++.+.+.|..++..... +-+...++.|+.+-+..+++
T Consensus 256 ~A~~~~~----~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 256 YAVYNNN----PEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred HHHHcCC----HHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 399
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=45.07 E-value=1.8e+02 Score=24.81 Aligned_cols=90 Identities=12% Similarity=0.150 Sum_probs=42.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHHhC----C-------HhHHHHHHHHHHHcC
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEW-----GCHPNE-TTFLVLIKSLYQAA----R-------VGEGDEMIDRMKSAG 375 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~-~t~~~li~~~~~~~----~-------~~~a~~~~~~m~~~g 375 (503)
|...+.-+.+.....++.+++++.+.+ .+.|+. .++..+-.++...+ + +++|.+.|+....
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-- 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-- 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--
Confidence 444444444444444444444433221 256664 56666666655433 2 3344444444444
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 042598 376 YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 376 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 410 (503)
..|+..+|+.-+.+..+ |=++..++.+.+
T Consensus 109 ~~P~ne~Y~ksLe~~~k------ap~lh~e~~~~~ 137 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAAK------APELHMEIHKQG 137 (186)
T ss_dssp H-TT-HHHHHHHHHHHT------HHHHHHHHHHSS
T ss_pred cCCCcHHHHHHHHHHHh------hHHHHHHHHHHH
Confidence 46777777776666633 445555555443
No 400
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.86 E-value=1.2e+02 Score=22.16 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 366 EMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 366 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
++|+-....|+..|...|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556655556666666666666666555555555555555555
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.85 E-value=1.6e+02 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 042598 363 EGDEMIDRMKSAGYAIG-KKDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 363 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
.+.++|+.|...|+.-. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555544432 2344445555555555555555554
No 402
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.77 E-value=2.1e+02 Score=24.78 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhc-CCCCCHHhHHHHHH-HHHhCCChh--HHHHHHHHHhcCCCCCHH----H
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDY-GFKRDKDSLRLVVE-KLCENGYAS--YAEKLVKDTANEIFPDDK----I 235 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~~~~~~ll~-~~~~~g~~~--~a~~~~~~~~~~~~p~~~----~ 235 (503)
.-++...-...+.|++++|.+-++++.+.- .++.-...|..+.. +++..+.-+ +|..++.-+..+..|+.. .
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~ 109 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVP 109 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCC
Confidence 334444555566777887777777665420 11223344555555 566665443 455555555554434322 1
Q ss_pred HHHHHHHH--------------HhcCCHHHHHHHHHHHHH
Q 042598 236 CDLLIKGW--------------CVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 236 ~~~li~~~--------------~~~g~~~~a~~~~~~m~~ 261 (503)
+...|.+. .+.|+++.|.+.++-|.+
T Consensus 110 ~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 110 PIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11122222 234777777777777764
No 403
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.98 E-value=5e+02 Score=28.99 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChh
Q 042598 234 KICDLLIKGWCVDG--KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE 311 (503)
Q Consensus 234 ~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 311 (503)
.-...+|.+|++.+ ++++|+.+..++++. +...-...|...+- +.++.++|+....
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f----------LvDvn~Ly~~ALG-------- 870 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF----------LVDVNKLYDVALG-------- 870 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee----------eccHHHHHHHHhh--------
Confidence 34567888888887 899999999998875 22222222222222 1233333333221
Q ss_pred hHH---HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 312 TFN---VLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 312 ~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
+|+ +++-|-..+.++.|-+-.++++.+. .|+..-| -|+ ...+++++|++-+..
T Consensus 871 ~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry--~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 871 TYDLELALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRY--KID--DHLKRYEKALRHLSA 926 (928)
T ss_pred hcCHHHHHHHHHHhccChHHHHHHHHHHHhC--Chhheee--eHh--hhhCCHHHHHHHHHh
Confidence 121 2333444556777777777777663 3333222 223 245677777766544
No 404
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.73 E-value=3.3e+02 Score=26.88 Aligned_cols=47 Identities=26% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 042598 313 FNVLISNLCK---IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA 359 (503)
Q Consensus 313 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 359 (503)
+..+++++.+ .++.+.|+.++..|.+.|..|....-..++.++-..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4444555544 5789999999999999998887666555555554444
No 405
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=43.36 E-value=3.3e+02 Score=29.02 Aligned_cols=47 Identities=6% Similarity=0.077 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 326 SEDAIKLFYRM-GEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 326 ~~~A~~l~~~m-~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
.++....+... ...|+..+......++... .|++..+..+++++...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 45555555544 4457777777777776654 58888888888776653
No 406
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.19 E-value=3.1e+02 Score=26.07 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhcC----CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHH-H
Q 042598 203 RLVVEKLCENGYASYAEKLVKDTANE----IFPDDKICDL--LIKGWCVDGKLDEAKRLAREMYR-----GGFELGTV-A 270 (503)
Q Consensus 203 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~-~ 270 (503)
..++...-+.++.++|+++++++.+. -.|+.+.|.. +...+...||.+++.+++++.++ .|+++++. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444555666788888888877442 3466666543 45556677899999999888887 67777554 4
Q ss_pred HHHHHHHHHhc
Q 042598 271 YNCILDCVSKL 281 (503)
Q Consensus 271 ~~~li~~~~~~ 281 (503)
|..+-.-|.+.
T Consensus 159 fY~lssqYyk~ 169 (380)
T KOG2908|consen 159 FYSLSSQYYKK 169 (380)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 407
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.48 E-value=5.7e+02 Score=28.93 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=86.4
Q ss_pred HHHHcCChhHHHHHHHHhHHhc----------------------CCCCC-----HHhHHHHHHHHHhCCChhHHHHHHHH
Q 042598 172 RLVRAGRPTQVLGFFERMERDY----------------------GFKRD-----KDSLRLVVEKLCENGYASYAEKLVKD 224 (503)
Q Consensus 172 ~~~~~g~~~~A~~~f~~m~~~~----------------------~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~ 224 (503)
+|..+|...+|+..|.+....+ |-.|+ ..=|-.++..+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3666788888888887765421 11111 12245566666666666666655444
Q ss_pred HhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCCCCC-----CCcH
Q 042598 225 TANEIFPD----DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT----VAYNCILDCVSKLCRKKDP-----FRLD 291 (503)
Q Consensus 225 ~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~~-----~~~~ 291 (503)
..+.+.+| ..+++++.+.....|.+-+|...+-. .||. ....-++-.++.+|..+.- .++-
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 43333332 35677888888888888888766543 4553 3445566667777764321 1234
Q ss_pred HHHHH-HHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 042598 292 SEAEK-VLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLF 333 (503)
Q Consensus 292 ~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (503)
++.+. +++.-.+.........|+-+-..+...+++.+|-.+.
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 45555 3333222222222334555555566777777765554
No 408
>PRK09857 putative transposase; Provisional
Probab=41.45 E-value=2e+02 Score=26.82 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 350 VLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.++......++.++-.++++.+.+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~ 234 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAE 234 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHH
Confidence 344433444554444555544444
No 409
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.04 E-value=48 Score=22.79 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC
Q 042598 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375 (503)
Q Consensus 344 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 375 (503)
+...++.++..+++-.-++++...+.++.+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444444443
No 410
>PRK09857 putative transposase; Provisional
Probab=39.89 E-value=2.1e+02 Score=26.80 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
+..++.-....|+.++..++++.+.+. .+......-++..-+.+.|.-+++.++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445666776677777766654 233334445666667777777788999999999998655
No 411
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.58 E-value=3.8e+02 Score=27.38 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=52.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT---FLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 388 (503)
....++.-|.+.+++++|..++..|.-.- . .... .+.+.+...+..--++.+..++.+...=..|....-...+.
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~-~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ 487 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNT-M-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVL 487 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccc-c-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHH
Confidence 34567789999999999999999985432 1 2233 34445555555555666666666665433343333333333
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 042598 389 RLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~ 407 (503)
.|.. .=.+-|.++|..|.
T Consensus 488 ey~d-~V~~~aRRfFhhLL 505 (545)
T PF11768_consen 488 EYRD-PVSDLARRFFHHLL 505 (545)
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 3332 11233445555444
No 412
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.50 E-value=1.2e+02 Score=21.39 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHh
Q 042598 178 RPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCE 211 (503)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~ 211 (503)
+.+.|.+++..++. .-+.++..||++-..+.+
T Consensus 12 DtEmA~~mL~DLr~--dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRD--DEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcc--hhhcChHHHHHHHHHHHH
Confidence 44555666655553 334555666665554433
No 413
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.47 E-value=1.9e+02 Score=24.42 Aligned_cols=67 Identities=9% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChh
Q 042598 148 KAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYAS 216 (503)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~ 216 (503)
+.+.+++++.|...+..=. .++..+...++.-.|.++++.+.+. +...+..|..-.|..+.+.|-+.
T Consensus 11 ~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 4455566666665444322 3444444455666788888888776 55566666666667777776554
No 414
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.19 E-value=2.8e+02 Score=24.68 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=60.8
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH
Q 042598 307 PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP---NETTF--LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK 381 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 381 (503)
.++..-+|.||--|.-...+.+|-+.|.. +.|+.| |..++ ..-|......|++++|.+....+-..-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 35556677777666666666667666654 345554 33333 345667788999999999888775544444543
Q ss_pred HHHHHHH----HHHccCCHHHHHHHHHH
Q 042598 382 DYYEFLT----RLCGIERIEQAMSVFEK 405 (503)
Q Consensus 382 ~~~~li~----~~~~~g~~~~A~~~~~~ 405 (503)
.+-.|.. -..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333222 24567778888888764
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.02 E-value=1.9e+02 Score=23.72 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 042598 334 YRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 334 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 394 (503)
..+.+.|.+++..= ..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34445555544322 2345555555555666666666666555544444333344444444
No 416
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.34 E-value=1.3e+02 Score=22.98 Aligned_cols=61 Identities=3% Similarity=0.039 Sum_probs=31.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC--CHhHHHHHHHHHHHcCC
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA--RVGEGDEMIDRMKSAGY 376 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~g~ 376 (503)
..+|..|...|+.++|..-+.++.... -.......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 455667788888988888888763321 11223333444443332 22234455555555443
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.02 E-value=3.6e+02 Score=25.57 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHH-HHHHhCCHhHHHHHHHHHHHcCCCCCH----H
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGE----WGCHPNETTFLVLIK-SLYQAARVGEGDEMIDRMKSAGYAIGK----K 381 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~~~~----~ 381 (503)
..+-....-||+-|+-+.|++.+++-.+ -|.+-|..-+.+=+. .|....-+.+-.+..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566778999999999888876543 366777665544332 333444455666666666777766554 3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
+|-.+-.+-.+ ++.+|-.+|-+..
T Consensus 185 vY~Gly~msvR--~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLYCMSVR--NFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHc
Confidence 55555444444 7888888887665
No 418
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=37.79 E-value=1.8e+02 Score=28.51 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=72.6
Q ss_pred HHHHHHHhCCCCCChh---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--H--HHHHhCCHhHHHHHH
Q 042598 296 KVLLDMEYNGVPRNVE---TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI--K--SLYQAARVGEGDEMI 368 (503)
Q Consensus 296 ~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li--~--~~~~~~~~~~a~~~~ 368 (503)
-+++.+.+.|+.|+.+ +-.+++.++.-.+..++..+++.... .+...+...- . .+...+..+.-...+
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccchHHHHH
Confidence 4566778888888865 45667777776677777777765320 1111111100 0 001111112223344
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH----------------HhCCCCCCHHHHHHHHHHHHhcCChH
Q 042598 369 DRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM----------------KTDGHNPDSETYDLLMTKWCAHNRVD 432 (503)
Q Consensus 369 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------~~~g~~p~~~~~~~li~~~~~~g~~~ 432 (503)
+...+.|.-.|...+...++.+...-.+++|.+--... ...--.||+..|.++...++.-|-+.
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 44555566666666666666666655666666321111 11112689999999998888766554
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.15 E-value=72 Score=17.27 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHhHHhcCCCCCHHhHHHHH
Q 042598 177 GRPTQVLGFFERMERDYGFKRDKDSLRLVV 206 (503)
Q Consensus 177 g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll 206 (503)
|+.+.|..+|+.+... ..-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~--~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK--FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH--CCCChHHHHHHH
Confidence 3556667777776653 223444454443
No 420
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.13 E-value=2.7e+02 Score=29.13 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=52.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHH--HHHH-HHHHHHCCCCcCHHHHHHHHHH
Q 042598 204 LVVEKLCENGYASYAEKLVKDTAN---EIFPDDKICDLLIKGWCVDGKLDE--AKRL-AREMYRGGFELGTVAYNCILDC 277 (503)
Q Consensus 204 ~ll~~~~~~g~~~~a~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~--a~~~-~~~m~~~g~~~~~~~~~~li~~ 277 (503)
+|+.+|...|++..+.++++.+-. +-+.=...||..|+...+.|.++- ..+- -+.+.+.-+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 788889999999998888888743 333345567778888888887643 2222 2233445567778888877765
Q ss_pred HHh
Q 042598 278 VSK 280 (503)
Q Consensus 278 ~~~ 280 (503)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 421
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=36.96 E-value=1.3e+02 Score=21.89 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 042598 125 ANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMER 191 (503)
Q Consensus 125 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 191 (503)
..+.|+...|+.+++.....+.+.-++.++.+.-..-+-..+..++ ...+..|.++...+.+
T Consensus 10 ~~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~ll-----e~~PGaa~qia~~v~e 71 (83)
T PF10963_consen 10 FTFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELL-----EENPGAAMQIAGAVNE 71 (83)
T ss_pred EEeccCHHHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHH-----HHCCCHHHHHHHHHHH
Confidence 3467888888888888888888888888877664433334444444 1234446666665554
No 422
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.92 E-value=98 Score=21.29 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042598 379 GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427 (503)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (503)
+...++.+++.+++..-+++++..+.+....|. .+..+|---+..+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 334444445555544444555555555544442 344444444444444
No 423
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.93 E-value=1.1e+02 Score=26.71 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCH-------PNETTFLVLIKSLYQAA---------RVGEGDEMIDRMKSAGYA-IGKKDYYEFLT 388 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~-------p~~~t~~~li~~~~~~~---------~~~~a~~~~~~m~~~g~~-~~~~~~~~li~ 388 (503)
.+.|+.++..|--..++ -...-|..+..+|++.| +.+.-.++++..++.|++ .=...|+.+|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 45666666666443221 13456677777777766 334455566666666554 12245666665
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 042598 389 RLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~ 407 (503)
--...-+.++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 5555556666666666543
No 424
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.87 E-value=2.9e+02 Score=23.98 Aligned_cols=129 Identities=9% Similarity=0.125 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHH--
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFL--VLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYE-- 385 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-- 385 (503)
...|..++...- .+.. +......++....-.-.--++. .+...+...+++++|...++..... +....+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 345666665543 3333 5555566666543221112222 2345678899999999999887753 22233333
Q ss_pred ---HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 386 ---FLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 386 ---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
|.+.....|.+|+|+..++...+.+. .......--+.+...|+-++|..-|++.++.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44567778999999999987774321 22223444567889999999999999998876
No 425
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.63 E-value=2.1e+02 Score=22.11 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
.++|..+.+-+...+. -..++--+-+..+.+.|++++|+ .. -.....||...|-+|-. .+.|.-+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4566666666665432 12222223334556666666661 11 11223455555544432 356666666555555
Q ss_pred HHHc
Q 042598 371 MKSA 374 (503)
Q Consensus 371 m~~~ 374 (503)
+..+
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 5443
No 426
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.45 E-value=4.8e+02 Score=26.35 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--cCCHHHHHHHHHHHHHc-CCCCCHHHH
Q 042598 272 NCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK--IRRSEDAIKLFYRMGEW-GCHPNETTF 348 (503)
Q Consensus 272 ~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~-g~~p~~~t~ 348 (503)
+.+++.+.+.|. ..+|.+++..+...- +++...|.-||+.=.. .-+..-+..+|+.|... | .|...|
T Consensus 464 s~~l~~~~e~~~-------~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 464 SKYLDWAYESGG-------YKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred HHHHHHHHHhcc-------hHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 344555555544 556666666665432 3455566666543211 11255666667766554 5 455555
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 349 LVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.--+.-=...|..+.+-.++..+.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 5555555566776666666665554
No 427
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.95 E-value=5.6e+02 Score=27.00 Aligned_cols=45 Identities=7% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 327 EDAIKLFYR-MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 327 ~~A~~l~~~-m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
++..+.+.+ +.+.|+..+......++.. ..|++..+..+++++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia 231 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIA 231 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 444445544 3455777676666666653 45777777777765544
No 428
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.74 E-value=4.5e+02 Score=25.80 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 042598 231 PDDKICDLLIKGWCVD---GKLDEAKRLAREMYRGGFELGTVAYNCIL 275 (503)
Q Consensus 231 p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li 275 (503)
.+-..+..+|+++.+. .+.+.|+-.+.+|.+.|-.|.-..-..++
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4444555566666544 56777777777777777555444333333
No 429
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.64 E-value=1.5e+02 Score=21.35 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=15.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC
Q 042598 386 FLTRLCGIERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~m~~~g 410 (503)
+++.+.+|.-.++|+++++-|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555666666666666666555
No 430
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.59 E-value=1.7e+02 Score=22.71 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCI 274 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 274 (503)
++|+...++...++|+++++.|.+.| ..+...-+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35677778888889999999988887 4444433333
No 431
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.46 E-value=4.5e+02 Score=25.67 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=32.6
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HhCCHhHHHHHHHHHHHc
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNET--TFLVLIKSLY--QAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~--~~~~~~~a~~~~~~m~~~ 374 (503)
+.+.+++..|.++|+++... +.++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34677888888888887765 444443 3344444443 344566777777766553
No 432
>PHA02798 ankyrin-like protein; Provisional
Probab=33.96 E-value=3.3e+02 Score=27.58 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHHHHHHH
Q 042598 328 DAIKLFYRMGEWGCHPNET---TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKD--YYEFLTRLCGIERIEQAMSV 402 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~ 402 (503)
...++.+.+.+.|..+|.. -.+.+..+ +..+.. .-.++.+.+.+.|..++... ..+.+..+++.|. ..-.++
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a-~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~v 163 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLYCL-LSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIEI 163 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHHHH-HHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC-cchHHH
Confidence 3466777777777666543 22333333 333322 23456666667776654421 1223334444443 011233
Q ss_pred HHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc
Q 042598 403 FEKMKTDGHNPDSET---YDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450 (503)
Q Consensus 403 ~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (503)
.+.+.+.|..++... ..+.+..+.+.+--..-.++++.+.+.|..++.
T Consensus 164 v~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~ 214 (489)
T PHA02798 164 IKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK 214 (489)
T ss_pred HHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence 344455565554321 112233333322111123456666777765543
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.58 E-value=2.7e+02 Score=26.05 Aligned_cols=59 Identities=10% Similarity=0.225 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042598 364 GDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427 (503)
Q Consensus 364 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (503)
-.++|+.+.+.++.|.-..|.-+.-.+.++=.+.+.+.+|+.+.. |..-|..|+..||.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 367899999999999999999888889999999999999999884 33447778887774
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.25 E-value=2e+02 Score=21.25 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042598 239 LIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 239 li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
+.......|+.++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455667888888888887764
No 435
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.17 E-value=2.8e+02 Score=26.22 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
+.+|.++|++..+. -..+|+ +..+...--...+.+.+.....-...-..+.-+-.+.|+..+|.+.|++
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 406 MK-TDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 406 m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
+. +..+..-......||.+|....-+.++..++-+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 436
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=32.88 E-value=74 Score=31.32 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=96.8
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCC---CCHHHHHHHHHHH----
Q 042598 289 RLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW------GCH---PNETTFLVLIKSL---- 355 (503)
Q Consensus 289 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~---p~~~t~~~li~~~---- 355 (503)
..+++-.+.++.+.+.|. +|+ ...-++.|++.+++++|.+.+++-.+. |++ ....++..|+.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g~-~dv--l~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~Pl 101 (428)
T cd00245 25 PLLEEHIELLRTLQEEGA-ADV--LPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPV 101 (428)
T ss_pred CCHHHHHHHHHHHHhcCC-CCe--eccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCE
Confidence 447888888888888653 343 344578999999999999998886533 221 2334555555543
Q ss_pred -HHhCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHH-------HHHHhCCCCCCHHHHHHHHHH
Q 042598 356 -YQAARVGEGDEMIDRMKSAGYAIG---KKDYYEFLTRLCGIERIEQAMSVF-------EKMKTDGHNPDSETYDLLMTK 424 (503)
Q Consensus 356 -~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~-------~~m~~~g~~p~~~~~~~li~~ 424 (503)
.+.| -..+..+++.+...|+.-. ..+|+. -|.+.-.+++++.-| ....+.|++.|..+|.-+...
T Consensus 102 qvRhG-t~d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~ 177 (428)
T cd00245 102 QVRHG-TPDARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGT 177 (428)
T ss_pred eeccC-CccHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccC
Confidence 1122 2356777777777665422 233432 244443455555444 334467888787777765433
Q ss_pred HHhcCChHHHHHHHHHHHHCCCccCccccc
Q 042598 425 WCAHNRVDKANALFDEAVRNGVEVKPKEYR 454 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 454 (503)
++ ..-+..|..+++.+...|...+..++.
T Consensus 178 l~-pptla~aiaylea~la~glgV~~lS~~ 206 (428)
T cd00245 178 LV-PPSILIAIQILEALLAAEQGVKSISVG 206 (428)
T ss_pred cC-CcHHHHHHHHHHHHHHccCCCCEEEEE
Confidence 32 234677889999998888777775443
No 437
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.74 E-value=4.2e+02 Score=24.85 Aligned_cols=71 Identities=13% Similarity=0.247 Sum_probs=37.7
Q ss_pred ccCCHHHHHHHHH-HHHHcCCCCCH----HHHHHHHHHHHHhCCHhHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHccCC
Q 042598 322 KIRRSEDAIKLFY-RMGEWGCHPNE----TTFLVLIKSLYQAARVGEGDEMI-DRMKSAGYAIGKKDYYEFLTRLCGIER 395 (503)
Q Consensus 322 ~~g~~~~A~~l~~-~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~ 395 (503)
+...+++.....+ +|++.+ -|+. +.|..+|++- .+.+-.++. +..++ ...+|.-|+.++|..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCCh
Confidence 3344555555554 455554 3454 4566666543 232222222 11222 23468889999999998
Q ss_pred HHHHHHH
Q 042598 396 IEQAMSV 402 (503)
Q Consensus 396 ~~~A~~~ 402 (503)
.+..+-+
T Consensus 337 sEL~Ll~ 343 (412)
T KOG2297|consen 337 SELELLL 343 (412)
T ss_pred HHHHHHH
Confidence 8766543
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.49 E-value=3.8e+02 Score=24.22 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=39.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042598 204 LVVEKLCENGYASYAEKLVKDTAN-----E-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMY 260 (503)
Q Consensus 204 ~ll~~~~~~g~~~~a~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 260 (503)
.+..-|.+.|++++|.++|+.+.. + ..+...+...+..++.+.|+.+....+--+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 455678888999999999888732 2 22444556667777777788877776655543
No 439
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.16 E-value=4.5e+02 Score=24.96 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHH-----hcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCcC----HHH
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDT-----ANEIFPDDKICDLLIKGW-CVDGKLDEAKRLAREMYRGGFELG----TVA 270 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~~~----~~~ 270 (503)
.+-....-||+-|+-+.|++.+... .-|.+.|+..+.+-+..+ ....-+.+-++..+.+.+.|...+ ..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444556678888888887777654 225566666665544333 222334555555566666665554 245
Q ss_pred HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 271 YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 271 ~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
|..+-.+-.+. +.+|-.+|-+...
T Consensus 186 Y~Gly~msvR~---------Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLYCMSVRN---------FKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHh---------HHHHHHHHHHHcc
Confidence 65555554443 7788888877653
No 440
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.12 E-value=5.5e+02 Score=26.01 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 042598 379 GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD 414 (503)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (503)
+...+..+++.....+....|+.++++|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444455555555554445566666666666665443
No 441
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.96 E-value=5.6e+02 Score=27.82 Aligned_cols=46 Identities=9% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 326 SEDAIKLFYRMG-EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 326 ~~~A~~l~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.++..+.++++. ++|+.-+......+... ..|++..++.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 455666666653 45777677666665553 46888888888777654
No 442
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.81 E-value=2.6e+02 Score=22.22 Aligned_cols=58 Identities=7% Similarity=-0.062 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHH-HHHHHHHHcCChhHHHHHHHH
Q 042598 131 DETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLA-SCIDRLVRAGRPTQVLGFFER 188 (503)
Q Consensus 131 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~ 188 (503)
..+..++..++.-.|..++|.+++...+-..+-...| .++..|.++.+.++..++=++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455666677777788888888887776544444444 677888888777666655443
No 443
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.66 E-value=94 Score=21.95 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 245 VDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
-.|+.+.+.+++++..+.|..+.......+..+..+.|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468888999999999988888887777767766655544
No 444
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.19 E-value=2.2e+02 Score=21.01 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHHH
Q 042598 324 RRSEDAIKLFYRM 336 (503)
Q Consensus 324 g~~~~A~~l~~~m 336 (503)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 445
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.67 E-value=4.1e+02 Score=29.14 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCC---------------CCHHHHHHHHHHHHhcC
Q 042598 183 LGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIF---------------PDDKICDLLIKGWCVDG 247 (503)
Q Consensus 183 ~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------------p~~~~~~~li~~~~~~g 247 (503)
.+++.++.+..|+..+...+..++... .|+...++..++++..... .+......++++.. .+
T Consensus 185 ~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~ 261 (824)
T PRK07764 185 RGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA-AG 261 (824)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cC
Confidence 333444333335555555555444433 3566666666665432111 12222334555554 47
Q ss_pred CHHHHHHHHHHHHHCCCCc
Q 042598 248 KLDEAKRLAREMYRGGFEL 266 (503)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~~ 266 (503)
+...++.+++++.+.|..+
T Consensus 262 D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 262 DGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred CHHHHHHHHHHHHHcCCCH
Confidence 7888888888888877653
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.57 E-value=2.8e+02 Score=22.03 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=31.7
Q ss_pred hHHHHHHHHhHHhcCC-CCCHHhHHHHHHHHHhCCChhHHHHHHHH
Q 042598 180 TQVLGFFERMERDYGF-KRDKDSLRLVVEKLCENGYASYAEKLVKD 224 (503)
Q Consensus 180 ~~A~~~f~~m~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 224 (503)
+++.++|..|..+ |+ .--...|..-...+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3888888888887 55 33456677777777788888888888763
No 447
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.54 E-value=5.2e+02 Score=25.23 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=28.3
Q ss_pred HhCCChhHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 042598 210 CENGYASYAEKLVKDTANEIFPDDK--ICDLLIKGWC--VDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 262 (503)
.+.+++..|.++|+.+...+.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3566666666666666444333332 3344444443 235566777777765543
No 448
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.41 E-value=2.1e+02 Score=20.62 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRGGFELGTV 269 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 269 (503)
++++.+.++.-.++|+++++.|.+.| ..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 46777788888899999999999888 44444
No 449
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.35 E-value=4.5e+02 Score=24.46 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
...+......|++..|++++.+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3345555556666666666665543
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.29 E-value=2.9e+02 Score=23.29 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=41.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 042598 336 MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQ 398 (503)
Q Consensus 336 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 398 (503)
+.+.|++.+..-. .++..+...+..-.|.++++.+.+.+...+..|..-.++.+.+.|-+..
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556777665443 4555555556667788888888887777777776666777777776543
No 451
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.18 E-value=6e+02 Score=25.79 Aligned_cols=84 Identities=10% Similarity=0.182 Sum_probs=44.9
Q ss_pred HHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc----CC----------CCCHHHHHHHHHHHHhcCCH
Q 042598 184 GFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN----EI----------FPDDKICDLLIKGWCVDGKL 249 (503)
Q Consensus 184 ~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~----------~p~~~~~~~li~~~~~~g~~ 249 (503)
+.++.+.+..|+..+......++. ...|+...|+.++++... .+ ..+...+..++++....+..
T Consensus 187 ~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~ 264 (484)
T PRK14956 187 DYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNH 264 (484)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcH
Confidence 334444333355555555544443 234666666666665321 01 12333444555555544455
Q ss_pred HHHHHHHHHHHHCCCCcCHH
Q 042598 250 DEAKRLAREMYRGGFELGTV 269 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~ 269 (503)
..|+.++++|.+.|..|...
T Consensus 265 ~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 265 SKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHHHcCCCHHHH
Confidence 67888888888887765543
No 452
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.06 E-value=1.4e+02 Score=21.35 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.4
Q ss_pred HHHHHCCCccC
Q 042598 439 DEAVRNGVEVK 449 (503)
Q Consensus 439 ~~m~~~g~~p~ 449 (503)
+.+.+.|..++
T Consensus 76 ~~Ll~~g~~~~ 86 (89)
T PF12796_consen 76 KLLLEHGADVN 86 (89)
T ss_dssp HHHHHTTT-TT
T ss_pred HHHHHcCCCCC
Confidence 44444454443
No 453
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.78 E-value=4.9e+02 Score=24.66 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCC------------hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 042598 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGY------------ASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG 247 (503)
Q Consensus 180 ~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~------------~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 247 (503)
.+..++=+...++ +-|+.+|-.++..=-..-. .+.-+.++++..+..+-+...+-.+|..+.+..
T Consensus 3 ~r~~el~~~v~~~---P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 3 KRTAELNRRVREN---PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred hHHHHHHHHHHhC---cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCCCCCCCCcHHHHHHHHHHHHhCC----------CCCChhhHH
Q 042598 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSK---LCRKKDPFRLDSEAEKVLLDMEYNG----------VPRNVETFN 314 (503)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~~~~~~~~a~~~~~~m~~~g----------~~~~~~~~~ 314 (503)
+.++..+-++++.... .-+...|...|+.... ...+.+....+.++.+.+....... ..-=+..+.
T Consensus 80 ~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred CHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC
Q 042598 315 VLISNLCKIRRSEDAIKLFYRMGEWGC 341 (503)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (503)
-+.....++|..+.|+.+++.+.+-++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHHc
No 454
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.73 E-value=2.5e+02 Score=28.91 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=14.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
++-.+-++|.-..+++.|++.|++..+
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 444444555555555555555555444
No 455
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.65 E-value=3.7e+02 Score=26.84 Aligned_cols=150 Identities=18% Similarity=0.206 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC---cCHHHHHHHHHHHH-----
Q 042598 214 YASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG------GFE---LGTVAYNCILDCVS----- 279 (503)
Q Consensus 214 ~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~---~~~~~~~~li~~~~----- 279 (503)
.+++-.++++.+.+...+| ...+-|+.|.+.+++++|...+++-.+. |++ -...+...++...-
T Consensus 69 ~~~e~i~lL~~l~~~g~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQv 146 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQI 146 (480)
T ss_pred cHHHHHHHHHHHHHccCCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeec
Confidence 4555666666665533344 3344578888888888888888877653 221 22344444444331
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHH-------HHcCCCCCHHHHH
Q 042598 280 KLCRKKDPFRLDSEAEKVLLDMEYNGVPR---NVETFNVLISNLCKIRRSEDAIKLFYRM-------GEWGCHPNETTFL 349 (503)
Q Consensus 280 ~~g~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m-------~~~g~~p~~~t~~ 349 (503)
+.|. .++..+++-+...|+.- ..++||. -|.+.=-.++++..|+.+ .+.|+..|..+|.
T Consensus 147 RHGt--------pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FG 215 (480)
T TIGR01503 147 RHGT--------PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFG 215 (480)
T ss_pred cCCC--------CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccccc
Confidence 1222 36777777777776542 3455554 355555566666665532 4457777777776
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHH--cCCC
Q 042598 350 VLIKSLYQAARVGEGDEMIDRMKS--AGYA 377 (503)
Q Consensus 350 ~li~~~~~~~~~~~a~~~~~~m~~--~g~~ 377 (503)
.|...+ ---.+.-|..+++-+.. .|++
T Consensus 216 pLtgtL-vPPsisiav~ilE~Lla~eqGVk 244 (480)
T TIGR01503 216 PLTGTL-VPPSISNAIGIIEGLLAAEQGVK 244 (480)
T ss_pred CCCCCc-cChHHHHHHHHHHHHHHHHcCCe
Confidence 543221 11123445556655443 3554
No 456
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.82 E-value=6.5e+02 Score=25.76 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=24.1
Q ss_pred HHHHHHHHHH-HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 292 SEAEKVLLDM-EYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 292 ~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
++..+.+... .+.|+..+......++... .|++..|...++++...
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~ 224 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLAL 224 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhc
Confidence 3444444443 3446555555554444332 46777777777665443
No 457
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.78 E-value=6.5e+02 Score=25.77 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 326 SEDAIKLFYRM-GEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 326 ~~~A~~l~~~m-~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.++..+.++.. .+.|+..+......++.. ..|++..|...++++..
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 44555555544 445777676666665553 45788888888877654
No 458
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.34 E-value=3.1e+02 Score=21.87 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICD-LLIKGWCVDGKLDEAKRLAREM 259 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m 259 (503)
..+-.++..++.-.|..++|.++++..+-| ++=...| -+++.|.++.+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG--~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWG--HTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345566667777777777777777655432 1111222 3677777777766666655443
No 459
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=28.05 E-value=1.5e+02 Score=23.05 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHc-CCCC-CHHH
Q 042598 327 EDAIKLFYRMGEW-GCHP-NETT 347 (503)
Q Consensus 327 ~~A~~l~~~m~~~-g~~p-~~~t 347 (503)
+++.+.+.++... |+.| |...
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~ 28 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILC 28 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHH
Confidence 3455555555443 5665 4433
No 460
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=27.90 E-value=7.9e+02 Score=26.48 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHC-CC
Q 042598 197 RDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV-----------DGKLDEAKRLAREMYRG-GF 264 (503)
Q Consensus 197 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~-----------~g~~~~a~~~~~~m~~~-g~ 264 (503)
+.......++.++...|+++.|.+++..-...--+.......++.+... .|.++.|.++++-+... .-
T Consensus 430 ~~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~ 509 (715)
T PF08314_consen 430 SKDEIEEIFLEALLSSGRFSLAKSLYEESSSSPLSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPN 509 (715)
T ss_dssp -HHHHHHHHHHHHHHTT-HHHHHHHHHHTT---TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCc
Confidence 3456677888899999999999999987644423444555555554422 35577777777766543 00
Q ss_pred CcCHHHHHHHHHHHHhcCCC
Q 042598 265 ELGTVAYNCILDCVSKLCRK 284 (503)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~ 284 (503)
.+...-...||++.....++
T Consensus 510 ~~~~~~~~~Li~a~~~Ls~f 529 (715)
T PF08314_consen 510 SPRIQREKDLIKATHALSEF 529 (715)
T ss_dssp THHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHhC
Confidence 12344455666666665553
No 461
>PHA02989 ankyrin repeat protein; Provisional
Probab=27.78 E-value=3.5e+02 Score=27.42 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCCCCH
Q 042598 329 AIKLFYRMGEWGCHPNE 345 (503)
Q Consensus 329 A~~l~~~m~~~g~~p~~ 345 (503)
..++.+.+.+.|..+|.
T Consensus 87 ~~~iv~~Ll~~Gadin~ 103 (494)
T PHA02989 87 IKKIVKLLLKFGADINL 103 (494)
T ss_pred HHHHHHHHHHCCCCCCC
Confidence 34556666666655543
No 462
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.78 E-value=4.6e+02 Score=23.68 Aligned_cols=80 Identities=15% Similarity=0.280 Sum_probs=55.0
Q ss_pred CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcC-------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042598 194 GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE-------------IFPDDKICDLLIKGWCVDGKLDEAKRLAREMY 260 (503)
Q Consensus 194 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 260 (503)
++.-+..-..+++ +...|+...|+.-++.-..+ ..|.......|+..|. .+++++|.+++.++-
T Consensus 189 kv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 189 KVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELW 265 (333)
T ss_pred CCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 5555555555554 45678888888777754321 2377777777887765 568999999999999
Q ss_pred HCCCCcCHHHHHHHHHH
Q 042598 261 RGGFELGTVAYNCILDC 277 (503)
Q Consensus 261 ~~g~~~~~~~~~~li~~ 277 (503)
+.|+.|... .+++.+.
T Consensus 266 ~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 266 KLGYSPEDI-ITTLFRV 281 (333)
T ss_pred HcCCCHHHH-HHHHHHH
Confidence 999988654 3334443
No 463
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.46 E-value=1.3e+03 Score=28.75 Aligned_cols=117 Identities=9% Similarity=0.018 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCC
Q 042598 135 SFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENG 213 (503)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g 213 (503)
-.+...|+..++.+.+..+....-. +...++ -|-.....|++..|...|+.+.+. .|+ ...++-++......|
T Consensus 1424 fllq~lY~~i~dpDgV~Gv~~~r~a--~~sl~~-qil~~e~~g~~~da~~Cye~~~q~---~p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1424 FLLQNLYGSIHDPDGVEGVSARRFA--DPSLYQ-QILEHEASGNWADAAACYERLIQK---DPDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHhcCCcchhhhHHHHhhc--CccHHH-HHHHHHhhccHHHHHHHHHHhhcC---CCccccchhhHHHhhhccc
Confidence 3334488999999888777764221 222333 334456789999999999999854 555 667887887777788
Q ss_pred ChhHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 042598 214 YASYAEKLVKDTANEIFPDDKICDL-LIKGWCVDGKLDEAKRLAR 257 (503)
Q Consensus 214 ~~~~a~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~ 257 (503)
.++..+-..+.......+....+++ =+.+--+.++++.......
T Consensus 1498 ~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 8887777666554444444444443 3445567888888877766
No 464
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.28 E-value=2.8e+02 Score=21.10 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhCC
Q 042598 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI--ERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g 410 (503)
..++..|...++.++|...+.++... .-.......++...... ..-+.+..++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 34566777778888888887765321 11122333344444433 22334445555555444
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.93 E-value=1.5e+02 Score=22.91 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=21.1
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 042598 319 NLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~ 360 (503)
.+...+..-.|.++++++.+.+...+..|....+..+...|-
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 333334444455555555555544555555555555555543
No 466
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.70 E-value=1.5e+02 Score=30.80 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=22.6
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042598 198 DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREM 259 (503)
Q Consensus 198 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 259 (503)
+...-..++..|.+.|..+.|.++.+.+..... ...-|..-+..+.++|+.+.+..+-+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~-~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL-KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455666666666666666666665533111 1123444444555555554444443333
No 467
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=26.66 E-value=3.1e+02 Score=21.38 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCC------------------CCHHHHHHHHHHHHccCCHHHHHHHH
Q 042598 342 HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA------------------IGKKDYYEFLTRLCGIERIEQAMSVF 403 (503)
Q Consensus 342 ~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (503)
.|..+|..-+...++-. -..+..++++|.+.|.- .-...+...+..+...|+++.|.+++
T Consensus 16 ~~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll 93 (115)
T PF12793_consen 16 QPVEVTLDELAELLFCS--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLL 93 (115)
T ss_pred CCcceeHHHHHHHhCCC--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44455665555544333 24567777777776531 12344555666677777777777776
Q ss_pred H
Q 042598 404 E 404 (503)
Q Consensus 404 ~ 404 (503)
+
T Consensus 94 ~ 94 (115)
T PF12793_consen 94 D 94 (115)
T ss_pred H
Confidence 6
No 468
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.42 E-value=2.7e+02 Score=20.54 Aligned_cols=65 Identities=8% Similarity=0.119 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 042598 365 DEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN 435 (503)
Q Consensus 365 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 435 (503)
.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. + .|+ -|...+.++...|.-+-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r--g~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-Q--KEG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-c--CCc--HHHHHHHHHHHcCchhhhh
Confidence 445555555543 233333333222234566666666666665 3 232 3556666666666554443
No 469
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.41 E-value=7.1e+02 Score=25.46 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=50.4
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 042598 326 SEDAIKLFYRM-GEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 326 ~~~A~~l~~~m-~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
.++..+.+... .+.|+..+......++.. ..|++..+...++.+...+-..+.. ...
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~--------------------~V~ 234 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRK--------------------QVE 234 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHH--------------------HHH
Confidence 34555555543 345776666666655554 3477777777777655432111111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 405 KMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 405 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
++. | .+.......++.++ ..++.++|+.+++++...|..|.
T Consensus 235 ~~l--~-~~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 235 EAL--G-LPPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHH--C-CCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 111 1 12233333444544 33677777777777777775443
No 470
>PRK14136 recX recombination regulator RecX; Provisional
Probab=26.39 E-value=5.5e+02 Score=24.12 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHccCCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHH
Q 042598 94 TPTPSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRL 173 (503)
Q Consensus 94 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 173 (503)
.|...+++..|..+....+.-.++.+.+.+ .|+.++ .++.+++.+.+.+...|...-..++...
T Consensus 159 ~~~~~lk~kAL~lLSrReRSe~ELr~KL~k-kG~~ee---------------~IE~VIerLke~gYLDDeRFAesyVr~R 222 (309)
T PRK14136 159 RPARSLKGRALGYLSRREYSRAELARKLAP-YADESD---------------SVEPLLDALEREGWLSDARFAESLVHRR 222 (309)
T ss_pred ccHHHHHHHHHHHhhcccccHHHHHHHHHH-cCCCHH---------------HHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 355556666665555554555566666665 454331 2345666666666654544444444432
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHH
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKD 224 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 224 (503)
.+.+ .-..+-.++.++ |+..+. ....+..+ ....++.|..++++
T Consensus 223 --~~kk-Gp~rIrqELrQK-GId~eL--IEqALeei-eEDE~E~A~~L~eK 266 (309)
T PRK14136 223 --ASRV-GSARIVSELKRH-AVGDAL--VESVGAQL-RETEFERAQAVWRK 266 (309)
T ss_pred --hhch-hHHHHHHHHHHc-CCCHHH--HHHHHHhc-cHhHHHHHHHHHHH
Confidence 2222 234455666665 765332 22333322 22334445555543
No 471
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.36 E-value=4.4e+02 Score=22.99 Aligned_cols=30 Identities=10% Similarity=-0.027 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
....+.++..+...|+++.|.+.|.-+...
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 455677888888888888888888888765
No 472
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.18 E-value=6.1e+02 Score=24.57 Aligned_cols=57 Identities=12% Similarity=-0.050 Sum_probs=41.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHhcCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 042598 205 VVEKLCENGYASYAEKLVKDTANEIF-PDDKICDLLIKGWC-VDGKLDEAKRLAREMYR 261 (503)
Q Consensus 205 ll~~~~~~g~~~~a~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 261 (503)
-|..+.+.|.+..|+++.+-+-.--+ -|....-.+|+.|+ +.++++--+++++....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34567889999999999888765222 26666677888877 66778777888777654
No 473
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=26.12 E-value=4.4e+02 Score=22.91 Aligned_cols=68 Identities=6% Similarity=0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMKTDGH--------------NPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
--.++-.|-+.-+|.+..++++.|.+..+ .+--..-|.....|.+.|..|.|+.+++ +...-.
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii 211 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWII 211 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceee
Confidence 34566778888899999999998876522 2333457788889999999999999887 333434
Q ss_pred Ccccc
Q 042598 449 KPKEY 453 (503)
Q Consensus 449 ~~~~~ 453 (503)
+..+|
T Consensus 212 ~t~lW 216 (233)
T PF14669_consen 212 STPLW 216 (233)
T ss_pred cCCCC
Confidence 44444
No 474
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.99 E-value=4.7e+02 Score=23.27 Aligned_cols=107 Identities=8% Similarity=0.074 Sum_probs=65.9
Q ss_pred hHHHHHHHHHc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 312 TFNVLISNLCK--IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389 (503)
Q Consensus 312 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 389 (503)
.|...++||.. .+++++|++++-+- .+.|+-. .-++.++...|+.+.|..+++.+.-. ..+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 45566777654 57778888877322 2222222 24777888889999999998875332 1222333333334
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042598 390 LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (503)
..+|.+.+|+.+-+...+. -....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHh
Confidence 6678999999887766532 11457777887777544
No 475
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.86 E-value=7.2e+02 Score=25.35 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
++.+.+-++.=...|...+...+..+.. +..+.+.|...+-+|...|+..+..|....+. .-+++.+.-.++.++
T Consensus 282 Id~~l~~l~~~~~~~~~~~~~l~~~L~~---~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly--~LarnP~~Q~~L~~E 356 (519)
T KOG0159|consen 282 IDNALEELEKQDSAGSEYTGSLLELLLR---KELSRKDAKANVMDLLAAGVDTTSNTLLWALY--ELARNPEVQQRLREE 356 (519)
T ss_pred HHHHHHHHHhccccccchhHHHHHHHHH---ccCCHHHHHHHHHHHHHHhccchHHHHHHHHH--HHhcChHHHHHHHHH
Confidence 4555554443333332333344433332 34567888888899999998888777776664 445667777778888
Q ss_pred HHHc
Q 042598 371 MKSA 374 (503)
Q Consensus 371 m~~~ 374 (503)
+.+.
T Consensus 357 i~~~ 360 (519)
T KOG0159|consen 357 ILAV 360 (519)
T ss_pred HHhh
Confidence 7763
No 476
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=25.52 E-value=2.1e+02 Score=26.83 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=35.7
Q ss_pred HhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 042598 225 TANEIFPDD-KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLD 300 (503)
Q Consensus 225 ~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~ 300 (503)
+.+|..|++ .+|.++...=+.. -+++|...|......-+.....|...|...+-.+ ..+|..+|..
T Consensus 21 In~G~vP~iesa~~~~~e~e~~~-A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~---------~~~A~~~F~~ 87 (297)
T PF02841_consen 21 INSGSVPCIESAWQAVAEAENRA-AVEKAVEHYEEQMEQRVKLPTETLEELLELHEQC---------EKEALEVFMK 87 (297)
T ss_dssp HHTTS--BHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HhCCCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH---------HHHHHHHHHH
Confidence 445555665 3455555544332 3677777777644333233444566677776666 5577777764
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.38 E-value=3.8e+02 Score=21.88 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=33.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 042598 336 MGEWGCHPNETTFLVLIKSLYQA-ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERI 396 (503)
Q Consensus 336 m~~~g~~p~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 396 (503)
+.+.|.+.+..= ..++..+... +..-.|.++++.+.+.+...+..|..-.++.+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445566554432 2344444443 34556777777777666555665555555666665543
No 478
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.27 E-value=3.8e+02 Score=21.89 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=42.4
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh
Q 042598 148 KAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215 (503)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~ 215 (503)
.++...+++.|.+.+. --..++..+...++.-.|.++++++.+. +...+..|....++.+.+.|-+
T Consensus 6 ~~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 6 EDAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 4556666666665433 2345566667777778888888888876 5555566655566667766644
No 479
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.24 E-value=6.2e+02 Score=24.38 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=46.5
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCC------------HHHHHHHHHHHHc
Q 042598 327 EDAIKLFYR-MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIG------------KKDYYEFLTRLCG 392 (503)
Q Consensus 327 ~~A~~l~~~-m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~------------~~~~~~li~~~~~ 392 (503)
++....+.+ ..+.|+..+......++.. ..|+...+...++.+... +-..+ ....-.++++..
T Consensus 170 ~~l~~~l~~~~~~~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai~- 246 (367)
T PRK14970 170 KDIKEHLAGIAVKEGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLIL- 246 (367)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 444444443 4456776666666666653 347888888888876532 11111 111222344442
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 042598 393 IERIEQAMSVFEKMKTDGHNP 413 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p 413 (503)
.|+..+|..+++.+...|..|
T Consensus 247 ~~~~~~a~~~~~~l~~~~~~~ 267 (367)
T PRK14970 247 ENKIPELLLAFNEILRKGFDG 267 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 367777777777776665444
No 480
>PLN03025 replication factor C subunit; Provisional
Probab=25.08 E-value=5.9e+02 Score=24.02 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 042598 233 DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTV 269 (503)
Q Consensus 233 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 269 (503)
......+++... .+++++|...+.+|...|..|...
T Consensus 225 ~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 225 PLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 334445555554 588999999999999999877644
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.79 E-value=2.2e+02 Score=21.91 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChh
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYAS 216 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~ 216 (503)
++..+...+..-.|.++++.+.+. +...+..|..-.|+.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~-~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKK-GPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCEE
Confidence 444455555666677777777765 55556666666666676666543
No 482
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.60 E-value=4.4e+02 Score=28.91 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 326 SEDAIKLFYRM-GEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 326 ~~~A~~l~~~m-~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.++..+++.++ .++|+..+...+..++..+ .|++..++.+++++..
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia 227 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA 227 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh
Confidence 44555555554 4457777777666665543 4778888888887664
No 483
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.57 E-value=1.2e+02 Score=23.61 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=20.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA 359 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 359 (503)
+......+..-.|.++++.|.+.|...+..|.-.-|..+...|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3334444444455555555555555555555444455554444
No 484
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.53 E-value=7.8e+02 Score=25.24 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=48.9
Q ss_pred HHHHHHHH-HHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHHh
Q 042598 293 EAEKVLLD-MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGC-------------HPNETTFLVLIKSLYQA 358 (503)
Q Consensus 293 ~a~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~t~~~li~~~~~~ 358 (503)
+..+.+.. +...|+..+......++.. ..|++..|+.++++....|- .++......++.++ ..
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~ 258 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AA 258 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-Hc
Confidence 43444433 3445666666555555544 35889999999988765431 11222333344443 33
Q ss_pred CCHhHHHHHHHHHHHcCCCCCH
Q 042598 359 ARVGEGDEMIDRMKSAGYAIGK 380 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~~~~ 380 (503)
++.+.+..+++.+.+.|..+..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 6677777777777777665543
No 485
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.35 E-value=4.9e+02 Score=22.86 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=62.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHPN-----ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK-KDYYEFLTRLC 391 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~ 391 (503)
+-+.++|++++|..-|.+..+. +++. .+.|..-..++.+.+.++.|..-....++.+ |+- ...-.-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 3467889999999999988775 2222 2344444556778888888887777776633 321 11222234688
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHH
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDSE 416 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (503)
+...+++|++=|.++.+. .|...
T Consensus 180 k~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--CcchH
Confidence 888999999999988875 45443
No 486
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=24.18 E-value=8.1e+02 Score=25.34 Aligned_cols=316 Identities=10% Similarity=0.021 Sum_probs=164.7
Q ss_pred hHHHHHHHHHHhhCCCCCCCHH-HHHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHH-HcCChhHHHHHH
Q 042598 111 GRAILGFNHWLTQNANFSHTDE-TLSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLV-RAGRPTQVLGFF 186 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~-~~g~~~~A~~~f 186 (503)
.+.+...++.+.. . -|..+ -|......=.+.|..+.+..+|++. +.+.+...|...+..+. ..|+.+...+.|
T Consensus 61 ~~~~r~~y~~fL~--k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 61 VDALREVYDIFLS--K-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHh--h-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3444455555542 1 23333 2344444446778888899999876 55667777777665554 467788888888
Q ss_pred HHhHHhcCCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hc------CCHHHHHHHH
Q 042598 187 ERMERDYGFK-RDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWC---VD------GKLDEAKRLA 256 (503)
Q Consensus 187 ~~m~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~---~~------g~~~~a~~~~ 256 (503)
+.....-|.. .+...|...|.--..++++.....+++.+.+. ...-|+..-.-|. +. ...+++.++-
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 8887654432 35567888888778888899999999887541 1111222111111 11 1222222222
Q ss_pred HHHHHC---C-CCcCHHHHHH-----------------HHHHHHhcCC-CCCCCCcHHHHHHHHHHHHhC---CC----C
Q 042598 257 REMYRG---G-FELGTVAYNC-----------------ILDCVSKLCR-KKDPFRLDSEAEKVLLDMEYN---GV----P 307 (503)
Q Consensus 257 ~~m~~~---g-~~~~~~~~~~-----------------li~~~~~~g~-~~~~~~~~~~a~~~~~~m~~~---g~----~ 307 (503)
...... + .......... ++.-++..+. .........+....|++-..+ .+ +
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 221110 0 0000111111 1111110000 000000001111111111111 01 1
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
++..+|+..+.--...|+.+.+.-+|+...-- +.--...|-..+.-....|+.+-|..++....+--+ ++......+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHH
Confidence 35678888888888899999999888886432 111123333344444445888888877776665432 2222222222
Q ss_pred HHHHc-cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHH
Q 042598 388 TRLCG-IERIEQAMSVFEKMKTDGHNPDSE-TYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 388 ~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~ 436 (503)
..++. .|+++.|..+++...+. + |+.+ .-..-+....+.|+.+.+..
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 33333 67999999999998876 3 5543 22333455667888888873
No 487
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=24.09 E-value=2.4e+02 Score=28.51 Aligned_cols=24 Identities=0% Similarity=0.099 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 347 TFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 347 t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
-|..++.-|...+++++|.++...
T Consensus 575 py~~iL~e~~sssKWeqavRLCrf 598 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCRF 598 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHHh
Confidence 344455555555566666555543
No 488
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.94 E-value=1.7e+02 Score=20.55 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 358 (503)
..|+.+.+.+++++..+.|..|.......+..+....
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3466777777777777666666665555555554433
No 489
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.88 E-value=1.6e+02 Score=22.89 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=18.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRV 431 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 431 (503)
+.+...+..-.|.++++.|.+.|...+..|.---+..+...|-+
T Consensus 15 ~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 15 ELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 33333333444555555555444444444433344444444443
No 490
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.80 E-value=3e+02 Score=20.22 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 254 RLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 254 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
++|+-....|+..|..+|..+++...-.-- .+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVs-------P~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVS-------PDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCC-------HHHHHHHHHHHHc
Confidence 788888888888888888888877655433 5666777777754
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.71 E-value=8.6e+02 Score=26.14 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=67.6
Q ss_pred HHHHHHHHhccC------CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHH----------hHHHHHHHHHh
Q 042598 148 KAIHDFLVDNKE------VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD----------SLRLVVEKLCE 211 (503)
Q Consensus 148 ~~a~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~----------~~~~ll~~~~~ 211 (503)
++....+.+|.. .....+...++-.|-...+++..+++.+.++.- ||.. .|.-.++---+
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCC
Confidence 445555555522 345667777888888888888888888888764 4332 12222332234
Q ss_pred CCChhHHHHHHHHHhc---CCCCCHHH-----HHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 042598 212 NGYASYAEKLVKDTAN---EIFPDDKI-----CDL--LIKGWCVDGKLDEAKRLAREMYRGGFELGT 268 (503)
Q Consensus 212 ~g~~~~a~~~~~~~~~---~~~p~~~~-----~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 268 (503)
-|+-++|+.+.-.+.+ .+.||... |-- +-+.|...+..+.|.+.|++.-+ +.|+.
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~ 320 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLE 320 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchh
Confidence 5777778777666532 46676543 221 22334455666777777777654 34543
No 492
>PRK13456 DNA protection protein DPS; Provisional
Probab=23.69 E-value=2.7e+02 Score=23.92 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHhccCCCCCChhhhhhcccCCC--CCC-HHHHHHHHccCCchhHHHHHHHHHHhhCCCCCCCHHHHHH
Q 042598 60 DQVIARSLSGELLENLEADPLPISQRLHLIFSHV--TPT-PSLVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSF 136 (503)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (503)
...|+..|+..+....-.++..+..+..+.-.+. .|. +..+..+|...-..-+-|...++.+.+..+ .-|+.|+..
T Consensus 65 El~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l 143 (186)
T PRK13456 65 DRNHFEALVPRIYELGGKLPRDIREFHDISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDL 143 (186)
T ss_pred HHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHH
Confidence 3457888888888776555544443333222211 133 445666665544456778888888887555 568889888
Q ss_pred HHHHHhcCCCh-HHHHHHHH
Q 042598 137 FTDYFGRRKDF-KAIHDFLV 155 (503)
Q Consensus 137 ll~~~~~~~~~-~~a~~~~~ 155 (503)
+...+...-.. +...+++.
T Consensus 144 ~~~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 144 ALAILQEEIEHEAWFSELLG 163 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88877644333 33444443
No 493
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.63 E-value=2.1e+02 Score=22.59 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=15.8
Q ss_pred HHHccCCHHHHHHHHHH---HHH--cCCCCCHH
Q 042598 319 NLCKIRRSEDAIKLFYR---MGE--WGCHPNET 346 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~---m~~--~g~~p~~~ 346 (503)
++-..|+.++|+.-|+. |+. +|-.|+..
T Consensus 109 Al~~~Gr~~eA~~~fr~agEMiaERKGE~~~ke 141 (144)
T PF12968_consen 109 ALEGLGRKEEALKEFRMAGEMIAERKGEMPGKE 141 (144)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHH--S--TTHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 45667889999888864 433 35555543
No 494
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.56 E-value=8.1e+02 Score=25.11 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-C---C----------CCCHHHHHHHHHHHHhcCCH
Q 042598 184 GFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-E---I----------FPDDKICDLLIKGWCVDGKL 249 (503)
Q Consensus 184 ~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~---~----------~p~~~~~~~li~~~~~~g~~ 249 (503)
+.+..+.+..|+..+......++... .|+...|..++++... + + ..+......+++++. .|+.
T Consensus 185 ~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~ 261 (509)
T PRK14958 185 AHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAG 261 (509)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCH
Confidence 33333333336666665555554432 5777777777765421 1 1 133444445666655 4889
Q ss_pred HHHHHHHHHHHHCCCCcCH
Q 042598 250 DEAKRLAREMYRGGFELGT 268 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~ 268 (503)
+.++.++++|...|..+..
T Consensus 262 ~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 262 DRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 9999999999999987653
No 495
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.54 E-value=5.7e+02 Score=27.97 Aligned_cols=130 Identities=17% Similarity=0.138 Sum_probs=64.6
Q ss_pred HHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042598 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEA 252 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 252 (503)
+..+|+++.|++.-..+ -|..+|..|.......|+.+-|+..|+..++ |+.|--.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHH
Confidence 34556666665543332 2556677777777777777777777666544 33333334445666655
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 042598 253 KRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL 332 (503)
Q Consensus 253 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 332 (503)
.++......+ -|.. ....+++. .|+ +++-.+++..- |. .+. .|-+ -..+|.-++|.++
T Consensus 718 ~Km~~iae~r---~D~~--~~~qnalY-l~d-------v~ervkIl~n~---g~-~~l-aylt----a~~~G~~~~ae~l 775 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDAT--GQFQNALY-LGD-------VKERVKILENG---GQ-LPL-AYLT----AAAHGLEDQAEKL 775 (1202)
T ss_pred HHHHHHHHhh---hhhH--HHHHHHHH-hcc-------HHHHHHHHHhc---Cc-ccH-HHHH----HhhcCcHHHHHHH
Confidence 5544433321 1211 11111111 133 44444444332 21 111 2211 1346778889888
Q ss_pred HHHHHHc
Q 042598 333 FYRMGEW 339 (503)
Q Consensus 333 ~~~m~~~ 339 (503)
.++...+
T Consensus 776 ~ee~~~~ 782 (1202)
T KOG0292|consen 776 GEELEKQ 782 (1202)
T ss_pred HHhhccc
Confidence 8888664
No 496
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=23.43 E-value=88 Score=30.75 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred CChHHHHHHHHhccCC-----------------CCHHHHHHHHHHHHHcCC---hhHHHHHHHHh----HHhcCCCCCHH
Q 042598 145 KDFKAIHDFLVDNKEV-----------------LGPKTLASCIDRLVRAGR---PTQVLGFFERM----ERDYGFKRDKD 200 (503)
Q Consensus 145 ~~~~~a~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~---~~~A~~~f~~m----~~~~~~~~~~~ 200 (503)
+|++.+.+++++.+.. |...-...|-..+-+.|- +|+...-|+.. ...+|++||..
T Consensus 185 ND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt 264 (432)
T COG0001 185 NDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLT 264 (432)
T ss_pred CCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchh
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHhc-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDTAN-EIFPDDKICD----LLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCIL 275 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 275 (503)
++..+|.+=.-.|-+---.++.+...- +-.-..-|++ +|..++.....+.+...+|+.|.+.+
T Consensus 265 tlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~------------ 332 (432)
T COG0001 265 TLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALG------------ 332 (432)
T ss_pred hhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHH------------
Q ss_pred HHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-----------CHHHHHHHHHHHHHcCCCCC
Q 042598 276 DCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR-----------RSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 276 ~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~ 344 (503)
-.-+.-+-+...+.|++..+....+|+..+.... +.+...++|+.|.++|+-..
T Consensus 333 ---------------~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ 397 (432)
T COG0001 333 ---------------ERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLA 397 (432)
T ss_pred ---------------HHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccC
Q ss_pred HHHH-HHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 345 ETTF-LVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 345 ~~t~-~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
...| ...++.--...+++...+.+++..+
T Consensus 398 ps~~ea~flS~ahte~di~~~~~a~~~~~~ 427 (432)
T COG0001 398 PSQFEAGFLSTAHTEEDIDRTLEAADEAFK 427 (432)
T ss_pred CccccceeeecccCHHHHHHHHHHHHHHHH
No 497
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.40 E-value=5.4e+02 Score=24.66 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchH
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDS----ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDP 457 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 457 (503)
++.--+...-..---+++..++.++... -|+. .-|-.+.......|.++.++.+|++.+..|..|-...-.+++
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q ss_pred HHhcCchhhh
Q 042598 458 RYLKKPIAVK 467 (503)
Q Consensus 458 ~~~~~~~~~~ 467 (503)
..+......+
T Consensus 183 diL~~k~~eK 192 (353)
T PF15297_consen 183 DILKMKSQEK 192 (353)
T ss_pred HHHHhhhhhh
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.32 E-value=4.1e+02 Score=21.63 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 042598 369 DRMKSAGYAIGKKDYYEFLTRLCG-IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVD 432 (503)
Q Consensus 369 ~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 432 (503)
+.+.+.|+..+..-.. +++.+.. .+..-.|.++++.+.+.+...+..|.---+..+...|-+.
T Consensus 6 ~~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455668777665433 3444444 3567789999999998876667776666667777777543
No 499
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.31 E-value=9.9e+02 Score=26.05 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=47.0
Q ss_pred HHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc----C----------CCCCHHHHHHHHHHHHhc
Q 042598 181 QVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN----E----------IFPDDKICDLLIKGWCVD 246 (503)
Q Consensus 181 ~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~----------~~p~~~~~~~li~~~~~~ 246 (503)
+..+.++.+.+..|+.-+......+... ..|+..+|+.++++... . ...|...+..++.++. .
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~ 258 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-A 258 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-c
Confidence 3344444444333555555554444432 25666666666554311 0 1134444555666544 4
Q ss_pred CCHHHHHHHHHHHHHCCCCcC
Q 042598 247 GKLDEAKRLAREMYRGGFELG 267 (503)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~~~ 267 (503)
|+..+++.+++++...|+...
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 259 GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 889999999999998887544
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=22.64 E-value=2.6e+02 Score=18.97 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=23.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChHHHHHH
Q 042598 391 CGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW-----CAHNRVDKANAL 437 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~A~~~ 437 (503)
...|++-+|-++++++=...-.+....|..||... .+.|+.+.|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566666666666654321123444455555433 245666665544
Done!