Query 042598
Match_columns 503
No_of_seqs 569 out of 2995
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 13:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.1E-34 2.8E-38 283.6 24.8 210 250-466 7-226 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.2E-33 4.1E-38 282.3 25.3 212 217-428 8-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.4E-28 4.7E-33 254.5 37.8 372 94-483 114-580 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.8E-28 6.3E-33 253.5 33.7 370 95-482 82-545 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4.8E-21 1.6E-25 186.9 37.6 318 110-444 48-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.6E-21 2.3E-25 185.9 38.3 352 110-482 14-368 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1E-19 3.6E-24 180.9 36.3 304 129-450 24-362 (450)
8 3spa_A Mtrpol, DNA-directed RN 99.8 6.6E-21 2.3E-25 195.7 13.3 151 308-463 125-285 (1134)
9 2y4t_A DNAJ homolog subfamily 99.8 2.2E-18 7.4E-23 171.4 30.6 283 161-460 24-339 (450)
10 3spa_A Mtrpol, DNA-directed RN 99.8 6.7E-21 2.3E-25 195.6 10.8 161 232-404 126-305 (1134)
11 3ieg_A DNAJ homolog subfamily 99.8 3.9E-16 1.3E-20 149.6 37.8 302 130-445 2-336 (359)
12 2gw1_A Mitochondrial precursor 99.8 1.2E-17 4E-22 168.9 27.5 322 109-445 20-445 (514)
13 2gw1_A Mitochondrial precursor 99.8 5.9E-17 2E-21 163.7 30.1 301 131-445 6-402 (514)
14 3hym_B Cell division cycle pro 99.8 5.6E-16 1.9E-20 146.8 31.2 270 162-444 21-299 (330)
15 3hym_B Cell division cycle pro 99.8 2.9E-16 9.8E-21 148.9 29.2 294 126-432 17-322 (330)
16 1fch_A Peroxisomal targeting s 99.8 3E-16 1E-20 151.4 26.6 285 143-440 37-355 (368)
17 3ieg_A DNAJ homolog subfamily 99.7 2.8E-15 9.4E-20 143.7 31.5 268 162-445 2-302 (359)
18 3fp2_A TPR repeat-containing p 99.7 3.7E-15 1.3E-19 151.5 33.2 253 178-445 217-492 (537)
19 4eqf_A PEX5-related protein; a 99.7 3.3E-16 1.1E-20 151.2 23.5 266 162-440 64-352 (365)
20 3cv0_A Peroxisome targeting si 99.7 4.3E-15 1.5E-19 140.5 27.6 264 163-441 21-312 (327)
21 3fp2_A TPR repeat-containing p 99.7 1E-14 3.5E-19 148.2 31.6 322 110-445 40-458 (537)
22 1fch_A Peroxisomal targeting s 99.7 2.5E-15 8.6E-20 144.9 23.9 261 173-444 35-314 (368)
23 1b89_A Protein (clathrin heavy 99.7 7.9E-17 2.7E-21 153.9 12.1 288 99-436 8-303 (449)
24 3mkr_A Coatomer subunit epsilo 99.7 1.3E-14 4.5E-19 135.0 26.1 251 171-445 7-265 (291)
25 4eqf_A PEX5-related protein; a 99.7 2.8E-15 9.6E-20 144.6 22.2 265 130-405 64-352 (365)
26 3cv0_A Peroxisome targeting si 99.7 2.1E-14 7.3E-19 135.7 26.2 263 132-406 22-312 (327)
27 1b89_A Protein (clathrin heavy 99.7 5.2E-16 1.8E-20 148.3 13.8 240 143-428 15-254 (449)
28 3mkr_A Coatomer subunit epsilo 99.6 3.6E-13 1.2E-17 125.3 28.3 269 141-436 9-286 (291)
29 2xm6_A Protein corresponding t 99.6 2.2E-11 7.6E-16 122.3 43.2 274 144-445 128-433 (490)
30 2xm6_A Protein corresponding t 99.6 1.1E-11 3.7E-16 124.6 39.8 341 108-483 56-433 (490)
31 2ooe_A Cleavage stimulation fa 99.6 4.1E-11 1.4E-15 121.6 39.6 183 251-445 256-455 (530)
32 3uq3_A Heat shock protein STI1 99.6 2.6E-12 8.9E-17 116.7 26.3 224 163-408 5-235 (258)
33 3uq3_A Heat shock protein STI1 99.5 2E-12 6.8E-17 117.5 24.3 227 199-445 5-237 (258)
34 1ouv_A Conserved hypothetical 99.5 3.8E-11 1.3E-15 110.4 31.8 223 199-445 6-252 (273)
35 2vq2_A PILW, putative fimbrial 99.5 8.9E-12 3E-16 110.6 26.3 95 312-407 115-209 (225)
36 2ho1_A Type 4 fimbrial biogene 99.5 8.9E-12 3.1E-16 113.0 26.4 59 165-225 39-97 (252)
37 2pl2_A Hypothetical conserved 99.5 2.7E-12 9.2E-17 113.9 22.0 210 197-442 3-212 (217)
38 2ho1_A Type 4 fimbrial biogene 99.5 9.4E-12 3.2E-16 112.9 26.0 200 200-409 38-238 (252)
39 2vq2_A PILW, putative fimbrial 99.5 8.8E-12 3E-16 110.6 25.3 203 162-374 7-211 (225)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.8E-13 1.3E-17 123.8 16.8 220 177-408 19-243 (275)
41 2pl2_A Hypothetical conserved 99.5 4.7E-12 1.6E-16 112.4 23.1 211 160-407 2-212 (217)
42 1xi4_A Clathrin heavy chain; a 99.5 1.5E-10 5.3E-15 123.4 36.3 303 94-444 950-1309(1630)
43 1ouv_A Conserved hypothetical 99.5 1.4E-10 4.9E-15 106.5 31.5 224 162-410 5-252 (273)
44 3u4t_A TPR repeat-containing p 99.5 1.2E-11 4.2E-16 113.4 24.2 233 164-409 4-250 (272)
45 2q7f_A YRRB protein; TPR, prot 99.4 1E-11 3.6E-16 111.7 21.0 94 312-407 127-220 (243)
46 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.4E-12 1.5E-16 116.5 18.7 243 144-403 18-269 (275)
47 3u4t_A TPR repeat-containing p 99.4 2.6E-11 8.8E-16 111.3 23.8 237 199-445 3-251 (272)
48 2q7f_A YRRB protein; TPR, prot 99.4 1.2E-11 4E-16 111.3 20.7 201 162-374 22-222 (243)
49 4a1s_A PINS, partner of inscut 99.4 1.6E-12 5.6E-17 127.1 16.2 273 169-444 54-372 (411)
50 2ooe_A Cleavage stimulation fa 99.4 3.2E-10 1.1E-14 115.0 33.2 374 96-482 12-454 (530)
51 4g1t_A Interferon-induced prot 99.4 1.2E-10 4.1E-15 116.1 29.4 323 110-445 66-460 (472)
52 4g1t_A Interferon-induced prot 99.4 1E-09 3.5E-14 109.4 35.5 311 126-445 46-402 (472)
53 3ro2_A PINS homolog, G-protein 99.4 6.2E-12 2.1E-16 118.8 18.2 277 165-444 7-332 (338)
54 3sf4_A G-protein-signaling mod 99.4 7E-12 2.4E-16 122.1 19.1 280 162-444 8-336 (406)
55 2h6f_A Protein farnesyltransfe 99.4 8.7E-11 3E-15 113.1 25.3 230 163-406 97-344 (382)
56 1xi4_A Clathrin heavy chain; a 99.4 5.5E-10 1.9E-14 119.3 32.0 280 110-435 1064-1375(1630)
57 2h6f_A Protein farnesyltransfe 99.4 1.1E-10 3.7E-15 112.4 24.1 234 199-445 97-349 (382)
58 3sf4_A G-protein-signaling mod 99.3 5.8E-11 2E-15 115.6 20.3 297 128-431 6-363 (406)
59 3nf1_A KLC 1, kinesin light ch 99.3 6.5E-12 2.2E-16 117.5 13.0 240 163-444 27-307 (311)
60 2ond_A Cleavage stimulation fa 99.3 1.4E-09 4.9E-14 101.9 28.3 184 250-444 81-270 (308)
61 4a1s_A PINS, partner of inscut 99.3 1.4E-10 4.9E-15 113.3 22.0 270 133-409 50-372 (411)
62 2ond_A Cleavage stimulation fa 99.3 3E-09 1E-13 99.6 30.2 217 180-409 33-270 (308)
63 3ulq_A Response regulator aspa 99.3 4.2E-10 1.4E-14 109.0 23.4 290 142-444 23-368 (383)
64 3ro2_A PINS homolog, G-protein 99.3 1.9E-10 6.5E-15 108.5 20.1 270 133-409 7-332 (338)
65 4abn_A Tetratricopeptide repea 99.3 2.3E-10 7.7E-15 114.1 20.7 212 216-439 85-316 (474)
66 3vtx_A MAMA; tetratricopeptide 99.2 1.4E-09 4.6E-14 93.4 21.3 166 162-338 4-169 (184)
67 3vtx_A MAMA; tetratricopeptide 99.2 3.4E-09 1.2E-13 90.8 22.7 175 267-454 4-178 (184)
68 4abn_A Tetratricopeptide repea 99.2 5.6E-10 1.9E-14 111.3 20.1 215 179-406 84-318 (474)
69 3nf1_A KLC 1, kinesin light ch 99.2 8.2E-10 2.8E-14 103.1 19.3 243 129-408 25-306 (311)
70 3q15_A PSP28, response regulat 99.2 2.4E-08 8.2E-13 96.4 28.4 304 129-443 8-364 (378)
71 1hz4_A MALT regulatory protein 99.2 2.2E-08 7.6E-13 96.3 28.1 270 167-444 18-322 (373)
72 3as5_A MAMA; tetratricopeptide 99.2 4E-09 1.4E-13 90.0 19.7 162 166-373 11-172 (186)
73 3e4b_A ALGK; tetratricopeptide 99.2 1.2E-08 4.2E-13 100.9 25.9 340 112-486 55-425 (452)
74 3e4b_A ALGK; tetratricopeptide 99.2 4.1E-09 1.4E-13 104.3 22.4 310 109-446 17-353 (452)
75 3as5_A MAMA; tetratricopeptide 99.1 6.7E-09 2.3E-13 88.5 20.8 165 234-409 9-173 (186)
76 1hz4_A MALT regulatory protein 99.1 4.4E-08 1.5E-12 94.2 28.4 264 138-408 21-321 (373)
77 3edt_B KLC 2, kinesin light ch 99.1 7.3E-10 2.5E-14 101.7 12.4 231 210-444 12-281 (283)
78 3ulq_A Response regulator aspa 99.1 2.4E-08 8.1E-13 96.6 22.7 230 169-408 109-367 (383)
79 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.7E-14 100.6 12.5 232 173-408 11-280 (283)
80 3q15_A PSP28, response regulat 99.0 1.1E-07 3.7E-12 91.8 24.3 231 168-408 106-364 (378)
81 2fo7_A Synthetic consensus TPR 99.0 4.3E-08 1.5E-12 78.4 17.8 131 312-445 3-133 (136)
82 4gyw_A UDP-N-acetylglucosamine 99.0 2.7E-08 9.4E-13 103.4 20.3 163 200-373 10-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.0 2.8E-08 9.6E-13 103.3 19.5 165 162-338 8-173 (723)
84 1qqe_A Vesicular transport pro 98.9 4.5E-08 1.5E-12 90.8 18.3 193 242-443 46-268 (292)
85 4i17_A Hypothetical protein; T 98.9 1.8E-07 6.3E-12 83.0 21.2 195 161-374 5-209 (228)
86 4i17_A Hypothetical protein; T 98.9 1.6E-07 5.4E-12 83.4 20.0 155 266-431 5-169 (228)
87 4e6h_A MRNA 3'-END-processing 98.9 9.9E-06 3.4E-10 83.3 33.9 187 291-482 359-570 (679)
88 3mv2_B Coatomer subunit epsilo 98.9 8.1E-07 2.8E-11 81.4 23.0 179 218-409 85-282 (310)
89 2fo7_A Synthetic consensus TPR 98.8 1.5E-07 5.2E-12 75.2 16.3 129 165-303 3-131 (136)
90 1qqe_A Vesicular transport pro 98.8 3.4E-07 1.2E-11 84.8 19.6 206 178-408 32-268 (292)
91 3mv2_B Coatomer subunit epsilo 98.8 1.8E-06 6.1E-11 79.1 23.1 242 173-445 23-283 (310)
92 2ifu_A Gamma-SNAP; membrane fu 98.7 1.5E-07 5.3E-12 87.8 14.5 229 176-437 4-254 (307)
93 3qky_A Outer membrane assembly 98.7 1.1E-06 3.7E-11 79.8 19.8 101 198-305 14-127 (261)
94 3urz_A Uncharacterized protein 98.7 8.3E-07 2.8E-11 77.6 17.6 170 165-347 6-192 (208)
95 4e6h_A MRNA 3'-END-processing 98.7 3.1E-05 1.1E-09 79.6 31.7 314 128-444 63-463 (679)
96 3qky_A Outer membrane assembly 98.7 1.1E-06 3.7E-11 79.8 17.6 101 231-339 13-126 (261)
97 3urz_A Uncharacterized protein 98.6 2E-06 6.8E-11 75.1 17.1 136 274-422 60-197 (208)
98 3rjv_A Putative SEL1 repeat pr 98.6 6.4E-06 2.2E-10 72.1 19.5 177 251-446 4-199 (212)
99 2yhc_A BAMD, UPF0169 lipoprote 98.6 7.6E-06 2.6E-10 72.4 20.0 166 269-445 5-214 (225)
100 2pzi_A Probable serine/threoni 98.6 1.3E-06 4.3E-11 91.1 16.9 173 210-395 402-583 (681)
101 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4E-06 1.4E-10 73.2 17.5 129 312-446 8-152 (213)
102 3dra_A Protein farnesyltransfe 98.5 5.6E-05 1.9E-09 69.7 25.6 220 178-408 48-286 (306)
103 2r5s_A Uncharacterized protein 98.5 1.7E-06 5.9E-11 73.3 14.3 79 294-373 93-172 (176)
104 2pzi_A Probable serine/threoni 98.5 1.1E-06 3.7E-11 91.6 15.6 173 174-360 402-583 (681)
105 2ifu_A Gamma-SNAP; membrane fu 98.5 1.4E-06 4.6E-11 81.4 14.9 199 212-442 4-222 (307)
106 2r5s_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 73.8 13.7 160 166-336 9-170 (176)
107 3u3w_A Transcriptional activat 98.5 1.8E-05 6.2E-10 73.0 22.3 162 275-443 82-265 (293)
108 2yhc_A BAMD, UPF0169 lipoprote 98.5 1E-05 3.5E-10 71.5 19.7 184 163-375 4-214 (225)
109 3qou_A Protein YBBN; thioredox 98.5 4.7E-06 1.6E-10 76.8 17.9 163 162-335 116-280 (287)
110 2vsy_A XCC0866; transferase, g 98.5 3.3E-06 1.1E-10 86.1 18.3 154 176-340 2-158 (568)
111 2vsy_A XCC0866; transferase, g 98.5 2.8E-06 9.6E-11 86.6 17.5 152 144-305 2-158 (568)
112 3rjv_A Putative SEL1 repeat pr 98.5 1.9E-05 6.5E-10 69.1 20.4 179 218-410 5-198 (212)
113 3dra_A Protein farnesyltransfe 98.5 6.1E-05 2.1E-09 69.5 24.5 226 211-444 45-287 (306)
114 3qou_A Protein YBBN; thioredox 98.5 4.8E-06 1.6E-10 76.8 17.2 164 266-442 115-282 (287)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.8E-05 6.1E-10 69.0 19.3 128 133-263 8-151 (213)
116 3u3w_A Transcriptional activat 98.5 6.4E-05 2.2E-09 69.3 23.8 130 126-261 41-183 (293)
117 1na0_A Designed protein CTPR3; 98.4 9.4E-06 3.2E-10 63.5 14.9 114 163-279 9-122 (125)
118 1a17_A Serine/threonine protei 98.4 1.3E-05 4.6E-10 66.4 16.2 131 310-443 13-145 (166)
119 4ga2_A E3 SUMO-protein ligase 98.4 5.7E-06 2E-10 67.9 13.4 135 291-429 13-148 (150)
120 2uy1_A Cleavage stimulation fa 98.4 0.0013 4.5E-08 65.3 32.4 322 97-443 15-412 (493)
121 2qfc_A PLCR protein; TPR, HTH, 98.4 7.2E-05 2.5E-09 69.0 21.5 166 164-336 76-263 (293)
122 3gw4_A Uncharacterized protein 98.3 7.7E-06 2.6E-10 70.6 13.7 156 211-373 4-175 (203)
123 1na0_A Designed protein CTPR3; 98.3 2.1E-05 7.1E-10 61.4 15.1 114 310-426 9-122 (125)
124 2qfc_A PLCR protein; TPR, HTH, 98.3 4.6E-05 1.6E-09 70.3 19.6 168 269-443 76-265 (293)
125 2lni_A Stress-induced-phosphop 98.3 1.5E-05 5.3E-10 63.2 13.9 119 161-282 14-132 (133)
126 4ga2_A E3 SUMO-protein ligase 98.3 3.9E-06 1.3E-10 68.9 10.5 141 139-283 5-149 (150)
127 3gw4_A Uncharacterized protein 98.3 7.2E-06 2.5E-10 70.8 12.6 156 174-338 3-175 (203)
128 2vyi_A SGTA protein; chaperone 98.3 2.3E-05 7.8E-10 61.8 14.7 119 162-283 11-129 (131)
129 2c2l_A CHIP, carboxy terminus 98.3 7.7E-06 2.6E-10 75.1 13.2 193 162-373 3-198 (281)
130 1a17_A Serine/threonine protei 98.3 3.5E-05 1.2E-09 63.9 16.1 129 163-301 13-143 (166)
131 2vyi_A SGTA protein; chaperone 98.3 2.7E-05 9.2E-10 61.4 14.5 121 308-431 10-130 (131)
132 4f3v_A ESX-1 secretion system 98.3 1.9E-05 6.6E-10 71.3 14.8 195 211-419 18-245 (282)
133 3q7a_A Farnesyltransferase alp 98.3 0.00069 2.4E-08 63.2 25.5 181 174-360 65-257 (349)
134 2lni_A Stress-induced-phosphop 98.2 2.6E-05 8.9E-10 61.8 13.5 119 308-429 14-132 (133)
135 1p5q_A FKBP52, FK506-binding p 98.2 3.3E-05 1.1E-09 72.8 15.9 133 309-443 146-293 (336)
136 4gco_A Protein STI-1; structur 98.2 4.3E-05 1.5E-09 60.5 13.9 97 164-262 14-110 (126)
137 2e2e_A Formate-dependent nitri 98.2 1.6E-05 5.4E-10 67.2 11.9 122 321-445 21-145 (177)
138 4gco_A Protein STI-1; structur 98.2 7.2E-05 2.5E-09 59.2 14.9 96 312-409 15-110 (126)
139 3q7a_A Farnesyltransferase alp 98.2 0.00085 2.9E-08 62.6 24.0 224 210-444 65-331 (349)
140 2c2l_A CHIP, carboxy terminus 98.2 1.3E-05 4.5E-10 73.5 11.6 194 232-444 3-199 (281)
141 2e2e_A Formate-dependent nitri 98.1 2E-05 6.8E-10 66.5 11.7 119 212-339 23-144 (177)
142 3gyz_A Chaperone protein IPGC; 98.1 7.6E-05 2.6E-09 61.1 14.7 98 346-445 37-134 (151)
143 3gyz_A Chaperone protein IPGC; 98.1 3.6E-05 1.2E-09 63.1 11.8 104 162-269 35-138 (151)
144 1elw_A TPR1-domain of HOP; HOP 98.1 0.00011 3.8E-09 56.5 14.2 98 163-262 4-101 (118)
145 1p5q_A FKBP52, FK506-binding p 98.1 8.5E-05 2.9E-09 70.0 15.2 129 162-301 146-291 (336)
146 1elw_A TPR1-domain of HOP; HOP 98.0 0.00033 1.1E-08 53.7 16.0 98 310-409 4-101 (118)
147 2uy1_A Cleavage stimulation fa 98.0 0.0018 6.1E-08 64.3 24.8 306 127-441 11-380 (493)
148 2vgx_A Chaperone SYCD; alterna 98.0 3.4E-05 1.2E-09 63.0 10.3 97 346-444 22-118 (148)
149 1elr_A TPR2A-domain of HOP; HO 98.0 0.00013 4.4E-09 57.3 13.5 110 311-423 5-120 (131)
150 4f3v_A ESX-1 secretion system 98.0 6.2E-05 2.1E-09 68.0 12.5 186 175-374 18-237 (282)
151 4gcn_A Protein STI-1; structur 98.0 0.00012 4.3E-09 57.8 12.9 105 311-418 9-119 (127)
152 2kck_A TPR repeat; tetratricop 98.0 0.00014 4.7E-09 55.4 12.8 98 309-408 5-105 (112)
153 3upv_A Heat shock protein STI1 98.0 0.00024 8.2E-09 55.8 14.5 96 311-408 5-100 (126)
154 3upv_A Heat shock protein STI1 98.0 0.00019 6.6E-09 56.4 13.8 98 163-262 4-101 (126)
155 2vgx_A Chaperone SYCD; alterna 98.0 8.8E-05 3E-09 60.5 12.0 99 162-262 20-118 (148)
156 2dba_A Smooth muscle cell asso 98.0 0.00022 7.6E-09 57.5 14.5 99 161-262 26-128 (148)
157 3ro3_A PINS homolog, G-protein 98.0 6E-05 2.1E-09 61.8 11.2 135 310-444 9-158 (164)
158 4b4t_Q 26S proteasome regulato 98.0 0.00042 1.4E-08 67.5 18.8 165 236-407 58-243 (434)
159 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00016 5.6E-09 62.1 14.1 134 310-445 38-187 (198)
160 3q49_B STIP1 homology and U bo 98.0 0.00018 6.3E-09 57.3 13.4 100 161-262 7-106 (137)
161 2kck_A TPR repeat; tetratricop 97.9 6E-05 2.1E-09 57.5 10.0 99 162-262 5-106 (112)
162 1elr_A TPR2A-domain of HOP; HO 97.9 9.3E-05 3.2E-09 58.2 11.4 111 163-277 4-121 (131)
163 2dba_A Smooth muscle cell asso 97.9 0.00041 1.4E-08 55.9 15.5 99 308-409 26-128 (148)
164 3q49_B STIP1 homology and U bo 97.9 0.00028 9.5E-09 56.2 14.3 99 344-444 8-106 (137)
165 2xcb_A PCRH, regulatory protei 97.9 0.00013 4.4E-09 59.0 12.1 99 162-262 17-115 (142)
166 2xcb_A PCRH, regulatory protei 97.9 0.0002 6.7E-09 57.8 13.0 95 348-444 21-115 (142)
167 4b4t_Q 26S proteasome regulato 97.9 0.00095 3.2E-08 65.0 20.4 194 242-443 13-244 (434)
168 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00015 5.1E-09 60.2 12.3 99 162-262 10-108 (164)
169 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00024 8.2E-09 58.9 13.3 100 308-409 9-108 (164)
170 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00025 8.5E-09 60.9 13.7 120 163-283 38-171 (198)
171 3dss_A Geranylgeranyl transfer 97.8 0.026 8.7E-07 52.3 26.8 185 249-445 90-305 (331)
172 2xev_A YBGF; tetratricopeptide 97.7 0.00065 2.2E-08 53.3 13.3 93 167-262 6-105 (129)
173 4gcn_A Protein STI-1; structur 97.7 0.00055 1.9E-08 54.0 12.4 105 164-272 9-120 (127)
174 1hxi_A PEX5, peroxisome target 97.7 0.00027 9.3E-09 55.3 10.4 95 166-262 20-114 (121)
175 3ro3_A PINS homolog, G-protein 97.7 0.00036 1.2E-08 56.9 11.6 132 235-373 11-157 (164)
176 2xev_A YBGF; tetratricopeptide 97.7 0.0017 5.7E-08 50.9 14.7 94 315-409 7-105 (129)
177 1hxi_A PEX5, peroxisome target 97.7 0.00046 1.6E-08 53.9 11.1 93 313-407 20-112 (121)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00049 1.7E-08 67.8 13.7 134 309-444 267-415 (457)
179 3dss_A Geranylgeranyl transfer 97.6 0.023 7.9E-07 52.6 23.7 184 215-409 90-304 (331)
180 3n71_A Histone lysine methyltr 97.6 0.00018 6.1E-09 71.1 9.7 131 208-338 318-463 (490)
181 1wao_1 Serine/threonine protei 97.6 0.00022 7.6E-09 70.6 10.0 122 315-439 11-134 (477)
182 3k9i_A BH0479 protein; putativ 97.6 0.00014 4.8E-09 56.5 6.4 84 359-443 4-89 (117)
183 3n71_A Histone lysine methyltr 97.6 0.00019 6.4E-09 70.9 8.8 125 242-373 318-463 (490)
184 1klx_A Cysteine rich protein B 97.5 0.0012 4.1E-08 52.9 11.6 112 324-446 9-128 (138)
185 3k9i_A BH0479 protein; putativ 97.4 0.0004 1.4E-08 53.8 7.8 82 291-373 6-89 (117)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0016 5.4E-08 64.1 13.8 121 162-283 267-400 (457)
187 1ihg_A Cyclophilin 40; ppiase 97.4 0.0015 5E-08 62.3 13.0 123 311-435 224-361 (370)
188 3rkv_A Putative peptidylprolyl 97.4 0.0018 6E-08 53.4 11.8 104 163-268 11-130 (162)
189 3rkv_A Putative peptidylprolyl 97.4 0.0027 9.1E-08 52.3 12.8 97 310-407 11-124 (162)
190 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00057 1.9E-08 64.4 9.5 113 311-443 180-292 (338)
191 2hr2_A Hypothetical protein; a 97.4 0.0026 9E-08 51.8 12.0 63 382-444 59-131 (159)
192 1ihg_A Cyclophilin 40; ppiase 97.4 0.0033 1.1E-07 59.9 14.7 119 164-283 224-356 (370)
193 1wao_1 Serine/threonine protei 97.3 0.00054 1.9E-08 67.8 9.0 109 172-283 15-125 (477)
194 2hr2_A Hypothetical protein; a 97.2 0.0048 1.6E-07 50.2 12.0 95 164-261 12-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0014 4.6E-08 61.7 9.1 129 164-303 180-327 (338)
196 1klx_A Cysteine rich protein B 97.1 0.028 9.6E-07 44.7 15.3 109 291-410 11-127 (138)
197 2kat_A Uncharacterized protein 97.0 0.0049 1.7E-07 47.2 9.9 80 180-261 2-81 (115)
198 2l6j_A TPR repeat-containing p 97.0 0.0031 1.1E-07 47.7 8.3 61 164-226 5-65 (111)
199 1na3_A Designed protein CTPR2; 97.0 0.0071 2.4E-07 43.7 9.9 59 165-225 11-69 (91)
200 2l6j_A TPR repeat-containing p 96.9 0.0076 2.6E-07 45.4 10.3 87 198-286 3-96 (111)
201 1na3_A Designed protein CTPR2; 96.9 0.0088 3E-07 43.1 10.0 82 198-280 8-89 (91)
202 2kat_A Uncharacterized protein 96.9 0.0065 2.2E-07 46.5 9.6 63 380-443 19-81 (115)
203 1dce_A Protein (RAB geranylger 96.7 0.12 4.1E-06 52.0 20.0 138 249-395 89-241 (567)
204 3ma5_A Tetratricopeptide repea 96.7 0.0083 2.8E-07 44.7 8.6 65 308-373 5-69 (100)
205 1dce_A Protein (RAB geranylger 96.7 0.056 1.9E-06 54.5 17.1 172 179-362 45-243 (567)
206 3ma5_A Tetratricopeptide repea 96.6 0.011 3.9E-07 43.9 8.7 62 345-407 7-68 (100)
207 1wy6_A Hypothetical protein ST 96.3 0.16 5.4E-06 39.4 13.1 135 111-265 23-157 (172)
208 1zu2_A Mitochondrial import re 96.3 0.021 7.1E-07 46.4 8.6 100 174-277 13-133 (158)
209 3ly7_A Transcriptional activat 96.2 0.083 2.8E-06 49.3 13.8 144 307-456 191-349 (372)
210 3mkq_A Coatomer beta'-subunit; 96.2 0.18 6.2E-06 53.2 18.2 154 208-406 608-762 (814)
211 3qww_A SET and MYND domain-con 96.1 0.0056 1.9E-07 59.3 5.7 86 246-338 311-410 (433)
212 3qwp_A SET and MYND domain-con 96.0 0.012 4.1E-07 57.1 7.5 93 239-338 293-399 (429)
213 3qwp_A SET and MYND domain-con 96.0 0.033 1.1E-06 54.0 10.3 92 352-443 294-399 (429)
214 1zu2_A Mitochondrial import re 95.9 0.03 1E-06 45.4 8.2 94 323-421 15-130 (158)
215 3mkq_A Coatomer beta'-subunit; 95.8 0.28 9.7E-06 51.7 17.7 153 142-337 610-763 (814)
216 3qww_A SET and MYND domain-con 95.7 0.0063 2.2E-07 59.0 3.9 83 291-373 314-410 (433)
217 3ly7_A Transcriptional activat 95.7 0.26 8.9E-06 46.0 14.4 74 307-384 274-347 (372)
218 1wy6_A Hypothetical protein ST 95.3 0.78 2.7E-05 35.6 15.4 46 176-225 20-65 (172)
219 3mkq_B Coatomer subunit alpha; 95.2 0.61 2.1E-05 38.3 13.6 82 309-405 33-114 (177)
220 2kc7_A BFR218_protein; tetratr 95.2 0.16 5.5E-06 37.0 9.6 56 318-374 8-64 (99)
221 3u64_A Protein TP_0956; tetrat 95.2 0.9 3.1E-05 40.7 15.5 115 269-385 155-282 (301)
222 2kc7_A BFR218_protein; tetratr 95.0 0.095 3.2E-06 38.3 7.6 55 171-227 8-63 (99)
223 3mkq_B Coatomer subunit alpha; 94.9 1.4 4.6E-05 36.3 16.6 27 199-225 34-60 (177)
224 3bee_A Putative YFRE protein; 94.3 0.37 1.3E-05 35.0 9.2 66 379-445 5-73 (93)
225 1pc2_A Mitochondria fission pr 94.2 0.65 2.2E-05 37.1 11.0 81 291-373 14-99 (152)
226 2v5f_A Prolyl 4-hydroxylase su 93.6 0.42 1.4E-05 35.5 8.7 65 380-444 5-75 (104)
227 1pc2_A Mitochondria fission pr 93.6 0.92 3.1E-05 36.3 10.9 85 326-414 14-103 (152)
228 3u64_A Protein TP_0956; tetrat 93.6 1.3 4.4E-05 39.7 12.8 110 309-420 153-282 (301)
229 2v5f_A Prolyl 4-hydroxylase su 93.1 0.88 3E-05 33.6 9.8 29 233-261 46-74 (104)
230 3bee_A Putative YFRE protein; 92.6 1.7 5.7E-05 31.4 10.4 63 162-226 5-70 (93)
231 4gns_B Protein CSD3, chitin bi 92.6 1.3 4.6E-05 45.6 13.2 53 388-441 345-397 (754)
232 4h7y_A Dual specificity protei 91.9 2.1 7.1E-05 34.0 10.4 54 394-448 74-127 (161)
233 4h7y_A Dual specificity protei 91.2 3.5 0.00012 32.7 11.0 114 160-276 10-136 (161)
234 2ff4_A Probable regulatory pro 89.8 1.3 4.3E-05 42.1 9.2 79 383-462 174-257 (388)
235 1nzn_A CGI-135 protein, fissio 89.5 3.6 0.00012 31.6 9.7 83 360-444 16-103 (126)
236 1v54_E Cytochrome C oxidase po 89.1 1.3 4.4E-05 32.2 6.4 32 160-191 42-73 (109)
237 1nzn_A CGI-135 protein, fissio 88.4 1.9 6.6E-05 33.1 7.5 81 327-409 18-103 (126)
238 2ff4_A Probable regulatory pro 88.3 1.7 5.9E-05 41.1 9.0 69 202-270 174-247 (388)
239 4fhn_B Nucleoporin NUP120; pro 88.1 3.3 0.00011 45.5 12.2 52 322-373 995-1049(1139)
240 4fhn_B Nucleoporin NUP120; pro 88.0 8.4 0.00029 42.3 15.4 50 312-363 940-989 (1139)
241 3lvg_A Clathrin heavy chain 1; 87.6 3.2E-05 1.1E-09 73.5 -23.5 120 308-440 197-316 (624)
242 1v54_E Cytochrome C oxidase po 86.3 6 0.0002 28.8 8.4 62 326-388 26-87 (109)
243 1qsa_A Protein (soluble lytic 86.2 30 0.001 34.8 26.2 98 116-217 57-154 (618)
244 3txn_A 26S proteasome regulato 85.1 25 0.00087 33.0 15.6 93 315-407 104-208 (394)
245 2y69_E Cytochrome C oxidase su 84.0 3.1 0.00011 32.1 6.4 47 158-206 83-129 (152)
246 3lvg_A Clathrin heavy chain 1; 82.9 0.00076 2.6E-08 64.4 -16.7 235 131-407 83-318 (624)
247 3ltm_A Alpha-REP4; protein eng 82.3 21 0.00071 29.8 19.6 111 129-248 31-141 (211)
248 4gns_B Protein CSD3, chitin bi 82.2 10 0.00036 39.1 11.7 129 235-371 250-397 (754)
249 3eiq_C Programmed cell death p 82.2 32 0.0011 31.9 14.0 115 382-497 219-336 (358)
250 4b4t_P 26S proteasome regulato 82.1 37 0.0013 32.6 22.1 204 235-445 139-387 (445)
251 2y69_E Cytochrome C oxidase su 81.7 14 0.00049 28.5 9.2 60 328-388 71-130 (152)
252 3lpz_A GET4 (YOR164C homolog); 78.6 40 0.0014 30.8 21.5 81 308-407 134-214 (336)
253 4b4t_R RPN7, 26S proteasome re 77.5 26 0.00089 33.5 12.4 116 291-408 110-236 (429)
254 3ltm_A Alpha-REP4; protein eng 75.9 33 0.0011 28.5 18.9 112 160-283 30-141 (211)
255 4b4t_R RPN7, 26S proteasome re 75.4 43 0.0015 31.9 13.3 98 164-261 132-236 (429)
256 1wdy_A 2-5A-dependent ribonucl 75.2 7 0.00024 34.4 7.3 122 317-450 152-281 (285)
257 3o48_A Mitochondria fission 1 74.3 19 0.00064 27.8 8.2 46 328-373 61-106 (134)
258 1k1a_A B-cell lymphoma 3-encod 74.0 9.6 0.00033 32.6 7.7 186 240-451 13-212 (241)
259 3ffl_A Anaphase-promoting comp 72.7 36 0.0012 27.4 10.1 57 317-373 27-91 (167)
260 1y8m_A FIS1; mitochondria, unk 72.1 33 0.0011 26.8 10.1 21 353-373 85-105 (144)
261 1wdy_A 2-5A-dependent ribonucl 71.8 12 0.0004 32.9 7.9 92 351-451 151-249 (285)
262 4b4t_P 26S proteasome regulato 71.4 73 0.0025 30.5 22.1 96 313-408 140-246 (445)
263 4ady_A RPN2, 26S proteasome re 69.9 1.2E+02 0.004 32.2 16.3 214 136-359 495-720 (963)
264 3ltj_A Alpharep-4; protein eng 69.7 45 0.0015 27.4 19.5 50 161-215 57-106 (201)
265 2p58_C Putative type III secre 69.6 27 0.00092 25.4 7.4 77 291-375 23-99 (116)
266 3o48_A Mitochondria fission 1 69.5 36 0.0012 26.2 10.0 70 340-409 35-107 (134)
267 3esl_A Checkpoint serine/threo 69.4 31 0.001 28.8 9.0 53 361-413 95-148 (202)
268 3ffl_A Anaphase-promoting comp 68.0 46 0.0016 26.8 9.8 28 233-260 122-149 (167)
269 3eu9_A Huntingtin-interacting 68.0 7.3 0.00025 33.2 5.5 13 209-221 49-61 (240)
270 2wpv_A GET4, UPF0363 protein Y 67.6 71 0.0024 28.8 22.9 166 207-407 41-215 (312)
271 3kea_A K1L; tropism, ANK repea 66.9 20 0.00069 31.8 8.4 44 403-455 211-254 (285)
272 2uwj_G Type III export protein 64.8 26 0.00089 25.4 6.5 77 291-375 22-98 (115)
273 2p58_C Putative type III secre 64.3 32 0.0011 25.0 6.9 50 390-445 50-99 (116)
274 3ltj_A Alpharep-4; protein eng 63.6 60 0.0021 26.6 20.7 153 161-337 26-178 (201)
275 3txn_A 26S proteasome regulato 63.5 98 0.0034 29.0 25.0 291 132-446 20-345 (394)
276 3kea_A K1L; tropism, ANK repea 62.3 16 0.00054 32.5 6.7 121 319-452 101-225 (285)
277 3esl_A Checkpoint serine/threo 61.7 65 0.0022 26.9 9.6 56 324-379 93-149 (202)
278 2uwj_G Type III export protein 61.5 31 0.0011 25.0 6.4 50 390-445 49-98 (115)
279 2nsz_A Programmed cell death p 60.1 48 0.0016 25.4 8.2 65 202-266 10-76 (129)
280 4fke_A Aminopeptidase N; zinc 59.1 1.8E+02 0.0061 30.9 15.0 164 272-445 690-861 (909)
281 1zbp_A Hypothetical protein VP 57.8 33 0.0011 30.2 7.5 56 207-262 5-60 (273)
282 3l6a_A Eukaryotic translation 57.6 1.2E+02 0.0041 28.1 12.2 25 166-190 15-39 (364)
283 4g8k_A 2-5A-dependent ribonucl 57.1 55 0.0019 29.6 9.7 103 332-450 221-329 (337)
284 1y8m_A FIS1; mitochondria, unk 57.0 68 0.0023 25.1 12.2 71 342-414 36-109 (144)
285 1zbp_A Hypothetical protein VP 55.4 45 0.0015 29.3 7.9 116 318-444 5-129 (273)
286 2wpv_A GET4, UPF0363 protein Y 54.3 1.2E+02 0.0042 27.2 15.3 150 272-443 37-216 (312)
287 4a1g_A Mitotic checkpoint seri 54.1 80 0.0027 25.0 9.2 51 398-448 83-134 (152)
288 4gq2_M Nucleoporin NUP120; bet 53.1 2E+02 0.007 30.6 14.3 107 169-281 816-949 (950)
289 2wvi_A Mitotic checkpoint seri 52.3 90 0.0031 25.0 8.7 51 399-449 79-130 (164)
290 2ion_A PDCD4, programmed cell 52.2 42 0.0015 26.6 6.8 64 202-265 12-77 (152)
291 1k1a_A B-cell lymphoma 3-encod 50.2 50 0.0017 27.8 7.7 18 173-190 16-33 (241)
292 3t8k_A Uncharacterized protein 48.2 47 0.0016 27.1 6.9 129 320-453 13-152 (186)
293 2wvi_A Mitotic checkpoint seri 46.9 96 0.0033 24.9 8.1 52 293-344 78-130 (164)
294 4a1g_A Mitotic checkpoint seri 45.8 1.1E+02 0.0038 24.2 9.6 54 361-414 81-135 (152)
295 3jxi_A Vanilloid receptor-rela 45.6 12 0.00042 32.4 3.0 28 240-267 9-36 (260)
296 3t8k_A Uncharacterized protein 45.5 73 0.0025 25.9 7.7 56 210-267 14-69 (186)
297 1ug3_A EIF4GI, eukaryotic prot 45.1 1.1E+02 0.0038 27.9 9.5 25 166-190 14-38 (339)
298 3eiq_C Programmed cell death p 45.0 1.9E+02 0.0064 26.7 14.0 64 313-377 220-285 (358)
299 3jxi_A Vanilloid receptor-rela 43.4 27 0.00094 30.1 5.0 55 170-225 9-72 (260)
300 3hra_A Ankyrin repeat family p 43.0 32 0.0011 28.2 5.1 14 210-223 13-26 (201)
301 2zu6_B Programmed cell death p 42.5 73 0.0025 28.7 7.6 64 313-377 169-234 (307)
302 3eu9_A Huntingtin-interacting 41.6 39 0.0013 28.4 5.6 47 209-256 16-62 (240)
303 2d2s_A Exocyst complex compone 41.0 1.7E+02 0.0058 25.0 9.5 88 317-407 25-118 (235)
304 2d2s_A Exocyst complex compone 40.9 1.7E+02 0.0059 25.0 9.7 89 351-442 24-118 (235)
305 3b7b_A Euchromatic histone-lys 40.3 47 0.0016 28.0 6.0 16 427-442 219-234 (237)
306 3aji_A 26S proteasome non-ATPa 39.5 64 0.0022 26.9 6.7 26 422-451 176-201 (231)
307 3hra_A Ankyrin repeat family p 39.3 36 0.0012 27.8 4.9 19 140-158 11-29 (201)
308 3utm_A Tankyrase-1; tankyrase, 39.1 55 0.0019 29.5 6.6 79 138-223 28-112 (351)
309 3lpz_A GET4 (YOR164C homolog); 38.2 2.3E+02 0.0079 25.8 18.6 149 272-443 39-215 (336)
310 2rfa_A Transient receptor pote 38.1 1.1E+02 0.0039 25.4 8.1 23 319-341 160-182 (232)
311 3aji_A 26S proteasome non-ATPa 37.5 51 0.0017 27.6 5.7 19 206-224 10-28 (231)
312 3twe_A Alpha4H; unknown functi 37.4 19 0.00064 17.9 1.5 22 472-493 3-24 (27)
313 3utm_A Tankyrase-1; tankyrase, 37.3 2E+02 0.0067 25.6 10.1 254 168-452 26-310 (351)
314 2rfa_A Transient receptor pote 36.5 98 0.0033 25.8 7.4 22 355-376 161-182 (232)
315 4aez_C MAD3, mitotic spindle c 35.9 77 0.0026 26.9 6.1 51 293-343 132-183 (223)
316 1bpo_A Protein (clathrin); cla 35.5 3.1E+02 0.01 26.3 10.9 59 145-205 343-401 (494)
317 4fke_A Aminopeptidase N; zinc 35.4 4.2E+02 0.015 28.0 16.2 155 237-407 690-858 (909)
318 4b4t_S RPN3, 26S proteasome re 34.9 1.5E+02 0.0051 28.9 8.7 65 163-227 231-298 (523)
319 1n11_A Ankyrin; clathrin, BAND 33.2 81 0.0028 29.7 6.9 22 426-451 352-373 (437)
320 4g8k_A 2-5A-dependent ribonucl 32.8 1.2E+02 0.0041 27.2 7.8 10 405-414 319-328 (337)
321 2ion_A PDCD4, programmed cell 32.3 1E+02 0.0034 24.4 6.0 64 313-377 12-77 (152)
322 2yru_A Steroid receptor RNA ac 32.1 83 0.0028 23.6 5.1 42 332-373 48-89 (118)
323 1wgl_A TOLL-interacting protei 31.6 65 0.0022 20.7 3.9 47 291-344 9-57 (59)
324 4aez_C MAD3, mitotic spindle c 31.1 1.4E+02 0.0046 25.4 6.9 52 397-448 131-183 (223)
325 2nsz_A Programmed cell death p 30.9 1.7E+02 0.006 22.1 8.9 65 271-343 10-76 (129)
326 1wty_A Hypothetical protein TT 30.4 1.4E+02 0.0048 22.2 6.4 31 249-281 4-34 (119)
327 4b4t_S RPN3, 26S proteasome re 30.1 4E+02 0.014 26.0 12.0 65 268-339 231-299 (523)
328 3twr_A Tankyrase-2; ankyrin re 30.0 62 0.0021 25.3 4.7 125 314-451 9-137 (165)
329 2r9g_A AAA ATPase, central reg 29.8 2.4E+02 0.0082 23.4 8.7 42 238-280 16-60 (204)
330 1wty_A Hypothetical protein TT 29.8 1.7E+02 0.0059 21.7 6.9 11 384-394 57-67 (119)
331 3ctd_A Putative ATPase, AAA fa 29.6 2.5E+02 0.0085 23.5 9.3 49 234-282 33-84 (213)
332 2yru_A Steroid receptor RNA ac 29.5 81 0.0028 23.7 4.7 45 295-339 46-90 (118)
333 3f3f_C Nucleoporin NUP85; stru 29.4 1.7E+02 0.0059 28.8 8.2 49 234-284 517-565 (570)
334 2fe3_A Peroxide operon regulat 29.1 1.8E+02 0.0061 22.5 7.1 37 394-430 35-71 (145)
335 3rjo_A Endoplasmic reticulum a 27.7 3.8E+02 0.013 25.1 23.5 163 269-444 198-369 (419)
336 2r9g_A AAA ATPase, central reg 27.6 2.6E+02 0.009 23.2 9.6 61 316-377 17-85 (204)
337 1ug3_A EIF4GI, eukaryotic prot 27.5 1.3E+02 0.0045 27.4 6.9 64 201-264 13-77 (339)
338 3ljn_A Hypothetical protein; a 27.3 1.1E+02 0.0038 27.8 6.5 83 352-440 177-266 (364)
339 3bge_A Predicted ATPase; struc 27.2 2.7E+02 0.0091 23.1 7.8 45 316-360 10-57 (201)
340 2qx5_A Nucleoporin NIC96; mRNA 27.1 3.3E+02 0.011 27.6 10.1 21 316-336 300-320 (661)
341 2xig_A Ferric uptake regulatio 26.7 2.3E+02 0.0077 22.1 7.8 58 336-394 18-75 (150)
342 2b7e_A PRE-mRNA processing pro 26.7 45 0.0015 21.5 2.4 29 327-355 3-31 (59)
343 2fe3_A Peroxide operon regulat 26.6 2.2E+02 0.0076 21.9 7.3 66 148-215 7-72 (145)
344 3eyy_A Putative iron uptake re 26.3 1.6E+02 0.0056 22.7 6.4 57 336-394 10-66 (145)
345 1n11_A Ankyrin; clathrin, BAND 25.8 1.6E+02 0.0055 27.5 7.6 13 403-415 360-372 (437)
346 1mzb_A Ferric uptake regulatio 25.1 1.8E+02 0.0061 22.2 6.3 60 334-394 7-67 (136)
347 2fu4_A Ferric uptake regulatio 24.8 1.6E+02 0.0056 19.8 6.6 32 397-428 34-65 (83)
348 3bge_A Predicted ATPase; struc 24.6 3E+02 0.01 22.8 9.6 46 237-282 8-56 (201)
349 3qye_A TBC1 domain family memb 24.5 3.8E+02 0.013 24.1 9.5 47 331-377 209-255 (331)
350 3ljn_A Hypothetical protein; a 23.5 1.5E+02 0.005 27.0 6.6 124 317-451 88-240 (364)
351 2f6m_A Suppressor protein STP2 23.1 96 0.0033 20.4 3.5 42 384-426 6-47 (65)
352 2w57_A Ferric uptake regulatio 22.7 2E+02 0.0067 22.4 6.2 60 336-396 8-68 (150)
353 2ijq_A Hypothetical protein; s 22.1 3E+02 0.01 21.9 8.4 61 383-444 36-104 (161)
354 1yii_A Annexin A5, annexin V, 22.0 4.3E+02 0.015 23.7 17.8 191 236-442 76-291 (320)
355 3b7b_A Euchromatic histone-lys 21.8 72 0.0025 26.8 3.8 18 390-407 217-234 (237)
356 2keb_A DNA polymerase subunit 21.3 2.3E+02 0.008 20.3 7.4 32 329-360 28-59 (101)
357 4ets_A Ferric uptake regulatio 21.2 2.2E+02 0.0076 22.5 6.3 68 326-394 13-83 (162)
358 2qq8_A TBC1 domain family memb 21.1 53 0.0018 30.0 2.8 44 332-375 215-258 (334)
359 2xig_A Ferric uptake regulatio 20.3 3.1E+02 0.01 21.3 8.4 65 149-215 13-77 (150)
360 3ctd_A Putative ATPase, AAA fa 20.1 3.9E+02 0.013 22.4 8.6 67 311-377 33-107 (213)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.1e-34 Score=283.56 Aligned_cols=210 Identities=18% Similarity=0.166 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---
Q 042598 250 DEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR--- 325 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 325 (503)
..+..+.+++.+.+.... ..+++.+|++|++.|+ +++|.++|++|.+.|+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~-------~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~ 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD-------VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh
Confidence 456667778887776654 3468999999999999 99999999999999999999999999999997765
Q ss_pred ------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 326 ------SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 326 ------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhh
Q 042598 400 MSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAV 466 (503)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 466 (503)
.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++.++......
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~ 226 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVAT 226 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcch
Confidence 9999999999999999999999999999999999999999999999999999999998888764433
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-33 Score=282.33 Aligned_cols=212 Identities=15% Similarity=0.157 Sum_probs=185.8
Q ss_pred HHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCC--CCcHH
Q 042598 217 YAEKLVKDTAN-EIFPD-DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDP--FRLDS 292 (503)
Q Consensus 217 ~a~~~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~--~~~~~ 292 (503)
.+..+.+++++ +.... ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+..... .+.++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34455555644 33333 3468889999999999999999999999999999999999999999988765432 23478
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
+|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042598 373 SAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428 (503)
Q Consensus 373 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (503)
+.|+.||..+|++||++|++.|++++|.+++++|.+.|..|+..||++++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.4e-28 Score=254.48 Aligned_cols=372 Identities=8% Similarity=-0.039 Sum_probs=266.8
Q ss_pred CCCHHHHHHHHcc--CCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCC-----------
Q 042598 94 TPTPSLVQSTLNF--SPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEV----------- 160 (503)
Q Consensus 94 ~p~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------- 160 (503)
.|+...+..+... ..+..+.|..+|+.+.. ..++..+++.++.+|.+.|++++|..+|++....
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 3555444443322 12236677888777643 2577888888888888888888888888753221
Q ss_pred -------CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcC---------------------------------------
Q 042598 161 -------LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYG--------------------------------------- 194 (503)
Q Consensus 161 -------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--------------------------------------- 194 (503)
.+..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 2477888888888888888888888888765410
Q ss_pred ------------------------------CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 042598 195 ------------------------------FKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWC 244 (503)
Q Consensus 195 ------------------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~ 244 (503)
..++..+|+.++.+|.+.|++++|.++|+++....+.+..+|+.++.+|.
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence 01456666667777777777777777777765433345666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 042598 245 VDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR 324 (503)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 324 (503)
+.|++++|.++++++.+.. ..+..+++.++.+|.+.|+ +++|.++|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK-------ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 7777777777777766432 3467788888888888887 788888888887643 246778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 042598 325 RSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
++++|+++|++|.+.+ ..+..+|+.++.+|.+.|++++|.++|+.+.+.. ..+..+|+.++..|.+.|++++|.++|+
T Consensus 422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888887754 3367888888888888888888888888888753 3367888888888888889999988888
Q ss_pred HHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHH
Q 042598 405 KMKTD----GHNPD--SETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEK 478 (503)
Q Consensus 405 ~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 478 (503)
++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+...+.. .+..+.+...+++
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH---KKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 88765 56777 6788888888888899999998888888765 2355666655444443 3344555555555
Q ss_pred HHHHH
Q 042598 479 MARKR 483 (503)
Q Consensus 479 ~~~~~ 483 (503)
+.+..
T Consensus 576 ~l~~~ 580 (597)
T 2xpi_A 576 SLAIS 580 (597)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 55443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-28 Score=253.50 Aligned_cols=370 Identities=8% Similarity=-0.044 Sum_probs=291.0
Q ss_pred CCHHHHHHHHccC--CchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc-CCCCHHHHHHHHH
Q 042598 95 PTPSLVQSTLNFS--PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK-EVLGPKTLASCID 171 (503)
Q Consensus 95 p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~ 171 (503)
++...+..++... .+..+.|+.+|+.+.+ ..|+..++..++.+|.+.|++++|..+++++. ..++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4455555555432 2347899999999874 35788999999999999999999999999873 4679999999999
Q ss_pred HHHHcCChhHHHHHHHHhHHhc--------------CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCC--------
Q 042598 172 RLVRAGRPTQVLGFFERMERDY--------------GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEI-------- 229 (503)
Q Consensus 172 ~~~~~g~~~~A~~~f~~m~~~~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------- 229 (503)
+|.+.|++++|+++|+++.... +...+..+|+.++.+|.+.|++++|+++|+++.+..
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 9999999999999999644321 223468999999999999999999999999873311
Q ss_pred ---------------------------------------------------------------CCCHHHHHHHHHHHHhc
Q 042598 230 ---------------------------------------------------------------FPDDKICDLLIKGWCVD 246 (503)
Q Consensus 230 ---------------------------------------------------------------~p~~~~~~~li~~~~~~ 246 (503)
.++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 15667777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH
Q 042598 247 GKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRS 326 (503)
Q Consensus 247 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 326 (503)
|++++|.++|+++.+.+ ..+..+++.++.+|.+.|+ .++|.++++++.+.. +.+..+|+.++.+|.+.|++
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGE-------KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTC-------HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 88888888888887654 3366778888888888877 778888888877543 35788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 042598 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM 406 (503)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 406 (503)
++|.++|+++.+.+ ..+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+.++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988753 2357789999999999999999999999988753 347788999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCccC--cccccchHHHhcCchhhhcccccccHHHHHH
Q 042598 407 KTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN----GVEVK--PKEYRVDPRYLKKPIAVKKGKKRETLPEKMA 480 (503)
Q Consensus 407 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 480 (503)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..+...+.. .+..+.+...++++.
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK---LKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---hcCHHHHHHHHHHHH
Confidence 8653 457889999999999999999999999999876 66676 4566665555443 234445555555555
Q ss_pred HH
Q 042598 481 RK 482 (503)
Q Consensus 481 ~~ 482 (503)
+.
T Consensus 544 ~~ 545 (597)
T 2xpi_A 544 LL 545 (597)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=4.8e-21 Score=186.89 Aligned_cols=318 Identities=12% Similarity=-0.020 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK-E-VLGPKTLASCIDRLVRAGRPTQVLGFFE 187 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~f~ 187 (503)
..+.|..+++...+ ..+.+..+|..+...+.+.|++++|...++++- . +.+...|..+..+|.+.|++++|++.|+
T Consensus 48 ~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 48 RLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35677777777665 234567778888888888888888888877652 2 3356677888888888888888888888
Q ss_pred HhHHhcCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 042598 188 RMERDYGFKRD-KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266 (503)
Q Consensus 188 ~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 266 (503)
++.+. .|+ ...+..+...+...|++++|.+.|+++....+.+..+|+.+...+...|++++|...|+++.+.+ +-
T Consensus 126 ~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 201 (388)
T 1w3b_A 126 SALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN 201 (388)
T ss_dssp HHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 87764 343 44566667777777888888888887765444556778888888888888888888888877643 23
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 042598 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346 (503)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (503)
+...+..+...+...|+ +++|...|.+..... +.+..+|+.+...|.+.|++++|++.|+++.+.+ +.+..
T Consensus 202 ~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARI-------FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp CHHHHHHHHHHHHTTTC-------TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred cHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH
Confidence 45677777777777776 667887777766543 2356777788888888888888888888887753 22456
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 347 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
+|..+...+.+.|++++|.+.++.+.+.. +.+..+++.+...+.+.|++++|.+.++++.+. .+.+..+|..+..+|.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHH
Confidence 77778888888888888888888887742 446677888888888888888888888887764 2345677888888888
Q ss_pred hcCChHHHHHHHHHHHHC
Q 042598 427 AHNRVDKANALFDEAVRN 444 (503)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~ 444 (503)
+.|++++|...|+++.+.
T Consensus 351 ~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 888888888888888764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=6.6e-21 Score=185.91 Aligned_cols=352 Identities=11% Similarity=-0.020 Sum_probs=287.4
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLVRAGRPTQVLGFFE 187 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 187 (503)
..+.|.+.+..+.+. .+.+...+..+...+...|+++++...++.. ..+.+..+|..+...|.+.|++++|++.|+
T Consensus 14 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 367888888887652 2345567777778889999999999988765 335688999999999999999999999999
Q ss_pred HhHHhcCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 042598 188 RMERDYGFKR-DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFEL 266 (503)
Q Consensus 188 ~m~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 266 (503)
++.+. .| +..+|..+..++.+.|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+.. +-
T Consensus 92 ~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 92 HALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99874 34 466899999999999999999999999866444456678888889999999999999999998753 33
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 042598 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346 (503)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (503)
+..+|..+...+.+.|+ +++|...|+++.+.+ +.+...|..+...+...|++++|+..|++..+.. +-+..
T Consensus 168 ~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGE-------IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp CHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 57889999999999998 899999999998754 2457789999999999999999999999988753 22578
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 347 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
++..+...+...|++++|.+.|+.+.+.. +.+..+|..+...|.+.|++++|.+.|+++.+. .+.+..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Confidence 89999999999999999999999999853 235678999999999999999999999999876 3668899999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHHHH
Q 042598 427 AHNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
+.|++++|.+.++++.+.. +.+..++..+...+.. .+..+.+...++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQ---QGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHT---TTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhh
Confidence 9999999999999998754 2234445444444443 23445555555655543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1e-19 Score=180.91 Aligned_cols=304 Identities=10% Similarity=-0.003 Sum_probs=255.3
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHH
Q 042598 129 HTDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVV 206 (503)
Q Consensus 129 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll 206 (503)
.+...+..+...+.+.|++++|..+++++- .+.+..+|..+..+|...|++++|+..|+++.+. .+.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 456778888899999999999999998763 3457899999999999999999999999999875 234678899999
Q ss_pred HHHHhCCChhHHHHHHHHHhcCCCCCH---HHHHHHHH------------HHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 042598 207 EKLCENGYASYAEKLVKDTANEIFPDD---KICDLLIK------------GWCVDGKLDEAKRLAREMYRGGFELGTVAY 271 (503)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~~~~p~~---~~~~~li~------------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 271 (503)
.+|.+.|++++|.+.|+++....+.+. ..+..++. .+...|++++|...|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999977544445 66666644 4889999999999999998753 4467889
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 042598 272 NCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN-ETTFLV 350 (503)
Q Consensus 272 ~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 350 (503)
..+..+|.+.|+ +++|.+.|+.+.+.. +.+..+|+.+...|...|++++|+..|+++.+. .|+ ...+..
T Consensus 181 ~~l~~~~~~~g~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 250 (450)
T 2y4t_A 181 ELRAECFIKEGE-------PRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 250 (450)
T ss_dssp HHHHHHHHHTTC-------GGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHCCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHH
Confidence 999999999999 778888888876543 357889999999999999999999999999875 343 344444
Q ss_pred H------------HHHHHHhCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 042598 351 L------------IKSLYQAARVGEGDEMIDRMKSAGYAIG-----KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNP 413 (503)
Q Consensus 351 l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 413 (503)
+ ...|...|++++|..+|+.+.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~ 327 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PD 327 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc
Confidence 4 78899999999999999999884 344 4578889999999999999999999988652 44
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc
Q 042598 414 DSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450 (503)
Q Consensus 414 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (503)
+...|..+..+|...|++++|...|+++.+.. |+.
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~ 362 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--END 362 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cch
Confidence 78999999999999999999999999999853 544
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=6.6e-21 Score=195.70 Aligned_cols=151 Identities=9% Similarity=-0.011 Sum_probs=130.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMG---EWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYY 384 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 384 (503)
--..|||++|++||+.|++++|.++|++|. ..|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345799999999999999999999998876 45899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC------cccccchH
Q 042598 385 EFLTRLCGIER-IEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK------PKEYRVDP 457 (503)
Q Consensus 385 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~ 457 (503)
++|+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+ ..|..++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 478999999999999999999999999877664 455555555 4566665 34445566
Q ss_pred HHhcCc
Q 042598 458 RYLKKP 463 (503)
Q Consensus 458 ~~~~~~ 463 (503)
..+.+.
T Consensus 280 dl~s~d 285 (1134)
T 3spa_A 280 DVYAKD 285 (1134)
T ss_dssp HHHCCC
T ss_pred HHHccC
Confidence 666653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=2.2e-18 Score=171.36 Aligned_cols=283 Identities=12% Similarity=0.016 Sum_probs=233.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
.+...+..+...|.+.|++++|+.+|+.+.+. .+.+..+|..+..+|...|++++|+..|+++....+.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 46778999999999999999999999999874 3457899999999999999999999999998765556788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC-H---HHHHHHHH------------HHHhcCCCCCCCCcHHHHHHHHHHHHhC
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELG-T---VAYNCILD------------CVSKLCRKKDPFRLDSEAEKVLLDMEYN 304 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~li~------------~~~~~g~~~~~~~~~~~a~~~~~~m~~~ 304 (503)
..|.+.|++++|.+.|+++.+. .|+ . ..+..+.. .+.+.|+ +++|...|+.+.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-------YTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh
Confidence 9999999999999999999975 344 3 55555543 4778887 89999999998875
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 042598 305 GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYY 384 (503)
Q Consensus 305 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 384 (503)
. +.+...+..+...|.+.|++++|+++|+++.+.. ..+..++..+...|...|++++|...|+.+.+.. +.+...+.
T Consensus 173 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 249 (450)
T 2y4t_A 173 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFA 249 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHH
Confidence 4 3578889999999999999999999999998763 3467899999999999999999999999998743 22344444
Q ss_pred HH------------HHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 042598 385 EF------------LTRLCGIERIEQAMSVFEKMKTDGHNPD-----SETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 385 ~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 447 (503)
.+ ...|.+.|++++|.+.|+++.+. .|+ ...|..+...+.+.|++++|+..++++.+.. +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p 326 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-P 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 44 78899999999999999999874 455 4578889999999999999999999998764 1
Q ss_pred cCcccccchHHHh
Q 042598 448 VKPKEYRVDPRYL 460 (503)
Q Consensus 448 p~~~~~~~l~~~~ 460 (503)
.+...+..+...+
T Consensus 327 ~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 327 DNVNALKDRAEAY 339 (450)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 2344554443333
No 10
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=195.65 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCC
Q 042598 232 DDKICDLLIKGWCVDGKLDEAKRLAREMYR---GGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPR 308 (503)
Q Consensus 232 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~ 308 (503)
-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|+ +++|.++|++|.+.|+.|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-------~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-------FKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCC
Confidence 456889999999999999999999887764 4788999999999999999888 889999999999999999
Q ss_pred ChhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC------HH
Q 042598 309 NVETFNVLISNLCKIRR-SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG------KK 381 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~ 381 (503)
|++|||++|+++|+.|+ .++|.++|++|.+.|+.||..||++++.++.+.+- ++..+++ ..++.|+ ..
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv-~P~f~p~~~~~~~~~ 273 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKV-KPTFSLPPQLPPPVN 273 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGG-CCCCCCCCCCCCCCC
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHh-CcccCCCCCCccccc
Confidence 99999999999999887 47888999999999999999999988876655432 2222333 2245544 45
Q ss_pred HHHHHHHHHHccC---------CHHHHHHHHH
Q 042598 382 DYYEFLTRLCGIE---------RIEQAMSVFE 404 (503)
Q Consensus 382 ~~~~li~~~~~~g---------~~~~A~~~~~ 404 (503)
+...|.+.|.+.+ ..++-.++|+
T Consensus 274 t~~LL~dl~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp CCTTTHHHHCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred chHHHHHHHccCCCCcCccccCCHHHHHHHHH
Confidence 5566777777655 2355555555
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=3.9e-16 Score=149.65 Aligned_cols=302 Identities=9% Similarity=-0.032 Sum_probs=247.9
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHH
Q 042598 130 TDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVE 207 (503)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~ 207 (503)
+...+..+...+...|++++|...+++.- .+.+..++..+...|...|++++|+..|+.+.+. .+.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 34567777888899999999999998762 2457889999999999999999999999998875 2336788999999
Q ss_pred HHHhCCChhHHHHHHHHHhcCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 042598 208 KLCENGYASYAEKLVKDTANEIF---PDDKICDLL------------IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN 272 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~---p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 272 (503)
.+...|++++|...|++.....+ .+...+..+ ...+...|++++|.+.++++.+.. +.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 99999999999999999876443 345555555 578889999999999999998753 44678899
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH---
Q 042598 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFL--- 349 (503)
Q Consensus 273 ~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--- 349 (503)
.+...+...|+ +++|...++...+.. +.+...|..+...|...|++++|...|++..+... .+...+.
T Consensus 159 ~~~~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~ 229 (359)
T 3ieg_A 159 LRAECFIKEGE-------PRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHHTTC-------HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHCCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHH
Confidence 99999999988 899999999998764 35778899999999999999999999999887532 2333332
Q ss_pred ---------HHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 042598 350 ---------VLIKSLYQAARVGEGDEMIDRMKSAGYAIGK----KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE 416 (503)
Q Consensus 350 ---------~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (503)
.+...+.+.|++++|...++.+.+.... +. ..+..+...|.+.|++++|.+.+++..+.. +.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 307 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence 2366788999999999999999885422 22 235567788999999999999999998752 44788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+|..+...|...|++++|.+.|++..+..
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999764
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.2e-17 Score=168.86 Aligned_cols=322 Identities=9% Similarity=-0.043 Sum_probs=240.5
Q ss_pred chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 042598 109 EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFF 186 (503)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f 186 (503)
+..+.|+..|+.+.+ .. |+..+|..+..++.+.|++++|...+++.- .+.+..+|..+..+|.+.|++++|+..|
T Consensus 20 g~~~~A~~~~~~al~-~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 20 KKYDDAIKYYNWALE-LK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp SCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh-cC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 347889999999887 33 789999999999999999999999998762 2457789999999999999999999999
Q ss_pred HHhHHhcCCC----------------------------------------------------------------------
Q 042598 187 ERMERDYGFK---------------------------------------------------------------------- 196 (503)
Q Consensus 187 ~~m~~~~~~~---------------------------------------------------------------------- 196 (503)
+.+.+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 9887541100
Q ss_pred ------C-CHHhHHHHHHHHHh---CCChhHHHHHHHHHhc-----C--C-------CCCHHHHHHHHHHHHhcCCHHHH
Q 042598 197 ------R-DKDSLRLVVEKLCE---NGYASYAEKLVKDTAN-----E--I-------FPDDKICDLLIKGWCVDGKLDEA 252 (503)
Q Consensus 197 ------~-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~--~-------~p~~~~~~~li~~~~~~g~~~~a 252 (503)
| +...+......+.. .|++++|..+|+++.. . . +.+..++..+...+...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 0 02222223333333 7899999999988754 1 1 23456788888899999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 042598 253 KRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL 332 (503)
Q Consensus 253 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 332 (503)
...|+++.+.+ |+..++..+..++...|+ +++|.+.++...... +.+...|..+...|...|++++|+..
T Consensus 257 ~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 257 HEDIKKAIELF--PRVNSYIYMALIMADRND-------STEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHTSSC-------CTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHhhC--ccHHHHHHHHHHHHHCCC-------HHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999988764 337788888888998888 456666666666543 24566788888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-C
Q 042598 333 FYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG-H 411 (503)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 411 (503)
|++..+... .+..++..+...+...|++++|...++.+.+.. ..+...+..+...|.+.|++++|.+.++++.+.. -
T Consensus 327 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 888877532 255677778888888888888888888887742 2345677778888888888888888888776431 0
Q ss_pred CCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCC
Q 042598 412 NPD----SETYDLLMTKWCA---HNRVDKANALFDEAVRNG 445 (503)
Q Consensus 412 ~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g 445 (503)
.++ ...|..+...|.. .|++++|...++++.+..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 111 3378888888888 888888888888887754
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.9e-17 Score=163.69 Aligned_cols=301 Identities=11% Similarity=-0.045 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhc-cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHH
Q 042598 131 DETLSFFTDYFGRRKDFKAIHDFLVDN-KEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209 (503)
Q Consensus 131 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~ 209 (503)
...+......+.+.|++++|...+.++ ...|+...|..+..+|.+.|++++|++.|+++.+. .+.+...|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHH
Confidence 345666777888999999999999887 33579999999999999999999999999999875 234678999999999
Q ss_pred HhCCChhHHHHHHHHHhcCCCCC---------------------------------------------------------
Q 042598 210 CENGYASYAEKLVKDTANEIFPD--------------------------------------------------------- 232 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p~--------------------------------------------------------- 232 (503)
.+.|++++|...|+++....+++
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999874422211
Q ss_pred ----------------------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CcCHHHHHHH
Q 042598 233 ----------------------DKICDLLIKGWCV---DGKLDEAKRLAREMYR-----GGF--------ELGTVAYNCI 274 (503)
Q Consensus 233 ----------------------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l 274 (503)
...+......+.. .|++++|..+|+++.+ ..- ..+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2223333333333 7999999999999987 311 2235678888
Q ss_pred HHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 275 LDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKS 354 (503)
Q Consensus 275 i~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 354 (503)
...+...|+ +++|...|+...+.. |+...|..+...|...|++++|+..|+++.+.. ..+..++..+...
T Consensus 244 ~~~~~~~~~-------~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 244 GIFKFLKND-------PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHSSC-------HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHCCC-------HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 889999988 899999999988765 338889999999999999999999999998764 3366788999999
Q ss_pred HHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 042598 355 LYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKA 434 (503)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 434 (503)
+...|++++|...++.+.+.. ..+...+..+...|...|++++|.+.++++.+.. +.+...|..+...|...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999854 2356788899999999999999999999988652 44678899999999999999999
Q ss_pred HHHHHHHHHCC
Q 042598 435 NALFDEAVRNG 445 (503)
Q Consensus 435 ~~~~~~m~~~g 445 (503)
...++++.+..
T Consensus 392 ~~~~~~a~~~~ 402 (514)
T 2gw1_A 392 LKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=5.6e-16 Score=146.84 Aligned_cols=270 Identities=9% Similarity=-0.078 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...+...|++++|+++|+++.+. .+.+...+..++..+...|++++|..+++++....+.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 3444555555555556666666666655543 12233444445555555566666666665554433334455555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 042598 242 GWCVDG-KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320 (503)
Q Consensus 242 ~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 320 (503)
.+...| ++++|.+.|++..+.. +.+...+..+...+...|+ +++|.+.|+...+... .+...+..+...|
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 169 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESE-------HDQAMAAYFTAAQLMK-GCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHTT-TCSHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 555666 5666666666555432 2234455555555555555 5556665555544321 2334455555556
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHc
Q 042598 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG--------YAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~~~~~~~~~li~~~~~ 392 (503)
...|++++|...|++..+.. ..+..++..+...+...|++++|...++.+.+.. ...+...+..+...|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 66666666666666655542 2234555555666666666666666666555421 02223455556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 393 IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.|++++|.+.+++..+.. +.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 666666666666655432 234455666666666666666666666655543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.9e-16 Score=148.86 Aligned_cols=294 Identities=11% Similarity=-0.051 Sum_probs=242.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHH
Q 042598 126 NFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLR 203 (503)
Q Consensus 126 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~ 203 (503)
+.+.+...+......+...|++++|..++++.- .+.+...+..++..+...|++++|..+|+++.+. .+.+...|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHH
Confidence 344566677788888888999999999998762 2345667778889999999999999999999875 234678889
Q ss_pred HHHHHHHhCC-ChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 042598 204 LVVEKLCENG-YASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 204 ~ll~~~~~~g-~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 282 (503)
.+...+...| ++++|...|++.....+.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999877555678889999999999999999999999998764 234567777889999998
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHH
Q 042598 283 RKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG--------CHPNETTFLVLIKS 354 (503)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~li~~ 354 (503)
+ +++|.+.++...+.. +.+...|..+...|...|++++|...|++..+.. ...+..++..+...
T Consensus 174 ~-------~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 174 N-------SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp C-------HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred h-------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 8 899999999998765 3567889999999999999999999999987641 13345788999999
Q ss_pred HHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChH
Q 042598 355 LYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW-CAHNRVD 432 (503)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~ 432 (503)
+...|++++|...++.+.+.. ..+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998854 3367788999999999999999999999988652 34677888888877 4566543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3e-16 Score=151.40 Aligned_cols=285 Identities=10% Similarity=-0.033 Sum_probs=221.4
Q ss_pred cCCChHHHHH-HHHhc-cCC---C--CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh
Q 042598 143 RRKDFKAIHD-FLVDN-KEV---L--GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215 (503)
Q Consensus 143 ~~~~~~~a~~-~~~~~-~~~---~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~ 215 (503)
..+++++|.. .+.+. ... | +...+..+...|.+.|++++|+..|+++.+. .+.+..+|..+..+|...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCH
Confidence 3477888887 77644 111 1 3556888999999999999999999999874 345778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH---------------HHHHHHh
Q 042598 216 SYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNC---------------ILDCVSK 280 (503)
Q Consensus 216 ~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~ 280 (503)
++|...|++.....+.+..++..+...|...|++++|.+.++++.+..-. +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999987655567889999999999999999999999999986422 2222211 2333446
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Q 042598 281 LCRKKDPFRLDSEAEKVLLDMEYNGVP-RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA 359 (503)
Q Consensus 281 ~g~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~ 359 (503)
.|+ +++|...|+.+.+.... ++..+|..+...|.+.|++++|+..|+++.+.. ..+..++..+...+...|
T Consensus 194 ~~~-------~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 194 DSL-------FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGN 265 (368)
T ss_dssp HHH-------HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ccc-------HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcC
Confidence 666 88999999988775422 157889999999999999999999999988763 335788999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhc
Q 042598 360 RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD-----------SETYDLLMTKWCAH 428 (503)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~ 428 (503)
++++|...++.+.+.. +.+...+..+...|.+.|++++|...|++..+.. +.+ ..+|..+..+|...
T Consensus 266 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 266 QSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHh
Confidence 9999999999998853 3457788999999999999999999999887541 112 68899999999999
Q ss_pred CChHHHHHHHHH
Q 042598 429 NRVDKANALFDE 440 (503)
Q Consensus 429 g~~~~A~~~~~~ 440 (503)
|+.++|..++++
T Consensus 344 g~~~~A~~~~~~ 355 (368)
T 1fch_A 344 GQSDAYGAADAR 355 (368)
T ss_dssp TCGGGHHHHHTT
T ss_pred CChHhHHHhHHH
Confidence 999999888764
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=2.8e-15 Score=143.67 Aligned_cols=268 Identities=13% Similarity=0.006 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
|+..+..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|...|++.....+.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 4567888889999999999999999999874 23467899999999999999999999999987644457789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCc----CHHHHHHH------------HHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFEL----GTVAYNCI------------LDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG 305 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~l------------i~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g 305 (503)
.+...|++++|...|++..+. .| +...+..+ ...+...|+ +++|.+.++.+.+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD-------YTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhC
Confidence 999999999999999999875 34 34444444 467778887 899999999987654
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHH-
Q 042598 306 VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYY- 384 (503)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~- 384 (503)
+.+...+..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|.+.++.+.+... .+...+.
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 227 (359)
T 3ieg_A 151 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAH 227 (359)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHH
Confidence 3567889999999999999999999999998764 34678899999999999999999999999988532 2233332
Q ss_pred -----------HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 385 -----------EFLTRLCGIERIEQAMSVFEKMKTDGHNPD-S----ETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 385 -----------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.+...+.+.|++++|.+.+++..+. .|+ . ..|..+...|...|++++|...+++..+..
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2366688999999999999999875 344 3 235567789999999999999999998864
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=3.7e-15 Score=151.47 Aligned_cols=253 Identities=13% Similarity=0.003 Sum_probs=177.5
Q ss_pred ChhHHHHHHHHhHHhcCCCCC--------HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 042598 178 RPTQVLGFFERMERDYGFKRD--------KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL 249 (503)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~~~~--------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 249 (503)
++++|+.+|+++.+. .|+ ..++..+...+...|++++|...|++.... .|+..+|..+...+...|++
T Consensus 217 ~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhcCH
Confidence 556666666666543 333 224555666777788888888888877542 24567777778888888888
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHH
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDA 329 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 329 (503)
++|.+.++++.+.. +.+..++..+...+...|+ +++|.+.|+...+.. +.+...|..+...|...|++++|
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD-------YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888877653 3356677778888888777 778888888776643 23456777788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcc----------C
Q 042598 330 IKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG-----YAIGKKDYYEFLTRLCGI----------E 394 (503)
Q Consensus 330 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~----------g 394 (503)
+.+|+++.+.. ..+...+..+...+...|++++|.+.++.+.+.. .......+......|... |
T Consensus 364 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 88888877653 2345677777888888888888888888876632 111222244445566666 8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 395 RIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
++++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+..
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888877642 4456778888888888888888888888887754
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=3.3e-16 Score=151.16 Aligned_cols=266 Identities=11% Similarity=-0.049 Sum_probs=213.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...+.+.|++++|++.|+++.+. .+.+..+|..+...|...|++++|+..|++.....+.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4556888899999999999999999999874 24578899999999999999999999999987655567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC-----------HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC-CC
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELG-----------TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP-RN 309 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~-~~ 309 (503)
.|...|++++|...|+++.+.. |+ ..++..+...+.+.|+ +++|.+.|+++.+.... .+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSV-------LEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHH-------HHHHHHHHHHHHHHSCSSCC
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHhCcCccC
Confidence 9999999999999999998742 22 2233344667777777 89999999998875422 26
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 389 (503)
..+|..+...|...|++++|++.|++..+.. ..+..+|..+..+|...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 7899999999999999999999999998763 3367899999999999999999999999998853 3357889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 390 LCGIERIEQAMSVFEKMKTDG---HN--------PDSETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g---~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
|.+.|++++|.+.|++..+.. .. .+...|..+..++...|+.+.+..+.++
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999887531 01 1367899999999999999988776554
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=4.3e-15 Score=140.48 Aligned_cols=264 Identities=11% Similarity=-0.012 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
...+..+...+...|++++|+.+|+++.+. .+.+...|..+..++...|++++|...|++.....+.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 345667777888899999999999988764 234677888888899999999999999998866555677888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH--------------HH-HHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTVAYNCI--------------LD-CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~ 307 (503)
|...|++++|.+.++++.+..- .+...+..+ .. .+...|+ +++|.+.+++..+.. +
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~~~~-~ 169 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-------YRECRTLLHAALEMN-P 169 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHH-------HHHHHHHHHHHHHHS-T
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-------HHHHHHHHHHHHhhC-C
Confidence 9999999999999999887531 122222222 11 2445555 889999999987654 2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
.+...+..+...|...|++++|.+.|+++.+.. ..+..++..+...+...|++++|.+.++.+.+.. +.+...+..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 477889999999999999999999999998764 3357889999999999999999999999998853 34678899999
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNP-------------DSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
..|...|++++|.+.+++..+. .| +...|..+..+|.+.|++++|..++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999988764 33 3678999999999999999999888754
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=1e-14 Score=148.23 Aligned_cols=322 Identities=11% Similarity=0.002 Sum_probs=242.6
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFE 187 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 187 (503)
..+.|+..|+.+.+. .+.+..++..+..++.+.|++++|...+++.- .+.+..++..+...|...|++++|++.|+
T Consensus 40 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 40 NFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp CCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 367889999988762 24578889999999999999999999998762 24578899999999999999999999997
Q ss_pred HhHHhcC-----------------------------------CCCCHH------------------------------hH
Q 042598 188 RMERDYG-----------------------------------FKRDKD------------------------------SL 202 (503)
Q Consensus 188 ~m~~~~~-----------------------------------~~~~~~------------------------------~~ 202 (503)
.+..... ..|+.. ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 5422100 001111 11
Q ss_pred HHHHHHHHh--------CCChhHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 042598 203 RLVVEKLCE--------NGYASYAEKLVKDTANEIFPDD-------KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG 267 (503)
Q Consensus 203 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 267 (503)
..+...+.. .|++++|..+|+++....+.+. .++..+...+...|++++|...|++..+. .|+
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~ 275 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPT 275 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCC
Confidence 111111111 1477888888888866443333 35667777888899999999999999875 566
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 042598 268 TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT 347 (503)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (503)
..++..+...+...|+ +++|.+.|+...+.. +.+..+|..+...|...|++++|+..|++..+... -+..+
T Consensus 276 ~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~ 346 (537)
T 3fp2_A 276 PNSYIFLALTLADKEN-------SQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYP 346 (537)
T ss_dssp HHHHHHHHHHTCCSSC-------CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHH
T ss_pred chHHHHHHHHHHHhcC-------HHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 7788888888888888 789999999887654 24677899999999999999999999999987642 24678
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHH
Q 042598 348 FLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDG-----HNPDSETYDLLM 422 (503)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li 422 (503)
+..+...+...|++++|.++++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.. .......+..+.
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 8889999999999999999999998853 3456788889999999999999999999877531 111223344555
Q ss_pred HHHHhc----------CChHHHHHHHHHHHHCC
Q 042598 423 TKWCAH----------NRVDKANALFDEAVRNG 445 (503)
Q Consensus 423 ~~~~~~----------g~~~~A~~~~~~m~~~g 445 (503)
..|... |++++|...|++..+..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 677777 99999999999998864
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=2.5e-15 Score=144.87 Aligned_cols=261 Identities=9% Similarity=-0.087 Sum_probs=205.7
Q ss_pred HHHcCChhHHHH-HHHHhHHhcCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 042598 173 LVRAGRPTQVLG-FFERMERDYGFKR--DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL 249 (503)
Q Consensus 173 ~~~~g~~~~A~~-~f~~m~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 249 (503)
+.-.|++++|++ .|++......-.| +...+..+...+.+.|++++|...|+++....+.+..+|..+...|...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 344578899988 8876553211112 3566888999999999999999999999876667888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHH--------------
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV-------------- 315 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-------------- 315 (503)
++|...|+++.+.+ +.+..++..+...|...|+ .++|.+.|+.+...... +...+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESL-------QRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSTT-TGGGCC---------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHH
Confidence 99999999998764 4467899999999999998 89999999999876532 2222221
Q ss_pred -HHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 042598 316 -LISNLCKIRRSEDAIKLFYRMGEWGCH-PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393 (503)
Q Consensus 316 -li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 393 (503)
.+..+...|++++|+.+|+++.+.... ++..++..+...+...|++++|...++.+.+.. +.+...+..+...|...
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHc
Confidence 244445899999999999999876322 157889999999999999999999999998853 34578899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|...|+++.+.
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999988652 456789999999999999999999999999875
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=7.9e-17 Score=153.95 Aligned_cols=288 Identities=10% Similarity=0.045 Sum_probs=135.7
Q ss_pred HHHHHHccCCchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 042598 99 LVQSTLNFSPEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGR 178 (503)
Q Consensus 99 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~ 178 (503)
.+..+|....+ .+.|.++++.+.. +.+|..+..++.+.|++++|.+.+.+. +|..+|..++..+...|+
T Consensus 8 a~~~ll~~~~~-ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 8 AVQVLIEHIGN-LDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccC-HHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCC
Confidence 34444443332 5677888777733 359999999999999999999999875 577899999999999999
Q ss_pred hhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042598 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLARE 258 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 258 (503)
+++|++.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..
T Consensus 77 ~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp -----------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999977766653 5667889999999999999999988885 27778999999999999999999999997
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 259 MYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 259 m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
+ ..|..+.+++.+.|+ +++|.+.+... .++.+|..++.+|+..|+++.|......+.
T Consensus 148 a---------~n~~~LA~~L~~Lg~-------yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~- 204 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGE-------YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV- 204 (449)
T ss_dssp T---------TCHHHHHHHHHTTTC-------HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-
T ss_pred h---------hhHHHHHHHHHHhcc-------HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-
Confidence 6 379999999999999 89999999887 378999999999999999999966555432
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCC---
Q 042598 339 WGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG--IERIEQAMSVFEKMKTDGHNP--- 413 (503)
Q Consensus 339 ~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p--- 413 (503)
+ +..-...++..|.+.|.+++|..+++...... .-....|+-|-.+|++ -|++.+.++.|.. +..++|
T Consensus 205 --~--~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~ 277 (449)
T 1b89_A 205 --V--HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLR 277 (449)
T ss_dssp --T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHH
T ss_pred --h--CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHH
Confidence 2 33445578999999999999999999887654 4456778888777877 4556666665542 222333
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHH
Q 042598 414 ---DSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 414 ---~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
+...|..+.-.|...|+++.|..
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 45679999999999999999875
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.3e-14 Score=135.03 Aligned_cols=251 Identities=11% Similarity=0.020 Sum_probs=163.5
Q ss_pred HHHHHcCChhHHHHHHHHhHHhcCCCCCH--HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 042598 171 DRLVRAGRPTQVLGFFERMERDYGFKRDK--DSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGK 248 (503)
Q Consensus 171 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 248 (503)
.-....|+++.|+..++.... ..|+. .....+..+|...|+++.|+..++. .-.|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCc
Confidence 334556777777777766542 23332 3445566777777777777765533 234566677777777777777
Q ss_pred HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 042598 249 LDEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSE 327 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 327 (503)
.++|++.++++...+..|+ ...+..+...+...|+ +++|.+.++. +.+...+..+...|.+.|+++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~-------~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN-------PDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC-------HHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 7777777777776654453 4445555566777777 6777777765 356667777777777777788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 042598 328 DAIKLFYRMGEWGCHPNETTFLVLI----KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVF 403 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~li----~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (503)
+|...|+++.+.. |+.. ...+. ..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|
T Consensus 148 ~A~~~l~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8877777777653 4432 22222 2223347777788888777775 3456677777777777788888888877
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC
Q 042598 404 EKMKTDGHNPDSETYDLLMTKWCAHNRVDK-ANALFDEAVRNG 445 (503)
Q Consensus 404 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g 445 (503)
++..+.. +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 224 ~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 224 QEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7766542 3466677777777777777755 467777776644
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=2.8e-15 Score=144.58 Aligned_cols=265 Identities=11% Similarity=-0.087 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHH
Q 042598 130 TDETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVE 207 (503)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~ 207 (503)
+...+..+...+.+.|++++|...+++.- .+.+..+|..+...|.+.|++++|++.|++..+. .+.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 34457778888999999999999998762 2457889999999999999999999999999875 2346889999999
Q ss_pred HHHhCCChhHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHH
Q 042598 208 KLCENGYASYAEKLVKDTANEIFP----------DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFE-LGTVAYNCILD 276 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~ 276 (503)
+|...|++++|+..|+++....+. ....+..+...+...|++++|.+.|+++.+..-. .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999987542111 1234455688999999999999999999886322 26889999999
Q ss_pred HHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 277 CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356 (503)
Q Consensus 277 ~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 356 (503)
.|.+.|+ +++|.+.|++..+.. +.+..+|+.+..+|.+.|++++|+..|++..+.. +.+..++..+..+|.
T Consensus 222 ~~~~~g~-------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 222 LFHLSGE-------FNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHCCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 9999998 899999999987754 3468899999999999999999999999998863 235788999999999
Q ss_pred HhCCHhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 357 QAARVGEGDEMIDRMKSAGYA-----------IGKKDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~g~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
..|++++|...|+++.+..-. .+...|..+..++...|+.+.+.++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999998874211 1357889999999999999999887654
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.1e-14 Score=135.67 Aligned_cols=263 Identities=8% Similarity=-0.081 Sum_probs=211.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHH
Q 042598 132 ETLSFFTDYFGRRKDFKAIHDFLVDNK--EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209 (503)
Q Consensus 132 ~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~ 209 (503)
..+-.....+...|++++|..++++.- .+.+...+..+...|...|++++|.+.|+++.+. .+.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHH
Confidence 345566677788899999999988762 2447788899999999999999999999998874 234678889999999
Q ss_pred HhCCChhHHHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 042598 210 CENGYASYAEKLVKDTANEIFPDDKICDLL--------------IK-GWCVDGKLDEAKRLAREMYRGGFELGTVAYNCI 274 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 274 (503)
...|++++|.+.+++.....+.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 999999999999998865333333333333 22 3777899999999999998764 3467889999
Q ss_pred HHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 275 LDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKS 354 (503)
Q Consensus 275 i~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 354 (503)
...|.+.|+ +++|.+.++...+.. +.+...|..+...|...|++++|...|++..+.. ..+..++..+...
T Consensus 179 a~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 179 GVLYNLSNN-------YDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhcc-------HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 999999988 899999999987654 3467889999999999999999999999988764 3367889999999
Q ss_pred HHHhCCHhHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 042598 355 LYQAARVGEGDEMIDRMKSAGYAI-----------GKKDYYEFLTRLCGIERIEQAMSVFEKM 406 (503)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 406 (503)
+...|++++|.+.++.+.+..... +...+..+...|.+.|+.++|..++++.
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999998753221 4678889999999999999999988743
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=5.2e-16 Score=148.30 Aligned_cols=240 Identities=10% Similarity=0.065 Sum_probs=108.1
Q ss_pred cCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHH
Q 042598 143 RRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLV 222 (503)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 222 (503)
+.|++++|.+++++++ ++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~~---~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5677899999999884 3469999999999999999999999642 57779999999999999999999977
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHH
Q 042598 223 KDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDME 302 (503)
Q Consensus 223 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~ 302 (503)
+...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|+ +++|...|..+
T Consensus 85 ~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~-------yeeA~~~Y~~a- 148 (449)
T 1b89_A 85 QMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM-------YDAAKLLYNNV- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------C-------TTTHHHHHHHT-
T ss_pred HHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHh-
Confidence 766553 4667889999999999999999998885 4777899999999999998 77999999866
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHH
Q 042598 303 YNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKD 382 (503)
Q Consensus 303 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 382 (503)
..|..++.++.+.|++++|++.++++ -+..||..++.+|...|+++.|...... +......
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 48999999999999999999999988 2789999999999999999999554443 3334444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (503)
...++..|.+.|++++|..+++...... +-....|+-|-..|++-
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 5679999999999999999999988553 45667788887777765
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=3.6e-13 Score=125.28 Aligned_cols=269 Identities=10% Similarity=0.029 Sum_probs=183.9
Q ss_pred HhcCCChHHHHHHHHhccC-CCCH--HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhH
Q 042598 141 FGRRKDFKAIHDFLVDNKE-VLGP--KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASY 217 (503)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 217 (503)
.-..|++.+|...+++... .|+. ...-.+..+|...|+++.|+..++.. -.|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHH
Confidence 3446788888887766432 2322 24455677888888888888765442 24566777788888888888888
Q ss_pred HHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHH
Q 042598 218 AEKLVKDTAN-EIFP-DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAE 295 (503)
Q Consensus 218 a~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~ 295 (503)
|++.++++.. +..| +...+..+...+...|++++|++.+++ ..+...+..+...|.+.|+ .++|.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~-------~~~A~ 150 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR-------LDLAR 150 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC-------HHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC-------HHHHH
Confidence 8888888744 4334 455566666788888888888888876 3566778888888888887 78888
Q ss_pred HHHHHHHhCCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 296 KVLLDMEYNGVPRNVETF---NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 296 ~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887653 443211 22334444568888888888888776 34567788888888888888888888888887
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042598 373 SAGYAIGKKDYYEFLTRLCGIERIEQ-AMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 373 ~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
+.. +-+..++..++..+...|+.++ +.++++++.+. .|+... +.....+.+.++++..
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 743 3366777888888888888865 56788877764 454332 2233444445555443
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=2.2e-11 Score=122.25 Aligned_cols=274 Identities=14% Similarity=0.053 Sum_probs=118.9
Q ss_pred CCChHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHh----CCCh
Q 042598 144 RKDFKAIHDFLVDNKEVLGPKTLASCIDRLVR----AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCE----NGYA 215 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~----~g~~ 215 (503)
.+++++|..++++.-..-+...+..|-..|.. .++.++|++.|++..+. .+...+..+-..|.. .++.
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCcCH
Confidence 34444444444443222334444444444443 34444444444444432 234444444444444 4444
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCCCCC
Q 042598 216 SYAEKLVKDTANEIFPDDKICDLLIKGWCV----DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK----LCRKKDP 287 (503)
Q Consensus 216 ~~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~~ 287 (503)
++|.++|++..+. .+...+..+...|.. .+++++|.+.|++..+.| +...+..+-..|.. .++
T Consensus 204 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d---- 274 (490)
T 2xm6_A 204 AISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKE---- 274 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCC----
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCC----
Confidence 4444444444321 123334444444443 344444444444444432 22233333333333 222
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC---
Q 042598 288 FRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI-----RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA--- 359 (503)
Q Consensus 288 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~--- 359 (503)
.++|.+.|+...+.| +...+..+-..|... ++.++|+..|++..+.| +...+..+...|...|
T Consensus 275 ---~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 275 ---PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp ---HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred ---HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 444555554444332 223334444444443 45555555555544433 2233334444443333
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 042598 360 RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG----IERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA----HNRV 431 (503)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 431 (503)
+.++|.+.|+...+.| +...+..+-..|.. .++.++|.+.|++..+.| +...+..|...|.. .++.
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 4445555555544432 33444444444444 455555555555554432 34444444444444 4555
Q ss_pred HHHHHHHHHHHHCC
Q 042598 432 DKANALFDEAVRNG 445 (503)
Q Consensus 432 ~~A~~~~~~m~~~g 445 (503)
++|...|++..+.|
T Consensus 420 ~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555555444
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=1.1e-11 Score=124.56 Aligned_cols=341 Identities=9% Similarity=0.003 Sum_probs=269.3
Q ss_pred CchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhc----CCChHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCh
Q 042598 108 PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGR----RKDFKAIHDFLVDNKEVLGPKTLASCIDRLVR----AGRP 179 (503)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 179 (503)
....+.|+.+|+...+ . -+...+..+-..|.. .++.++|..++++.-...+...+..|-..|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAE-Q---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 4457789999999887 3 357788888888887 89999999999987555688888899999988 8899
Q ss_pred hHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHh----CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 042598 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLCE----NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV----DGKLDE 251 (503)
Q Consensus 180 ~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 251 (503)
++|++.|++..+. -+...+..+-..|.. .++.++|.++|++..+. .+...+..+...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 9999999998875 467888888888887 88999999999988653 467888888888888 899999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----c
Q 042598 252 AKRLAREMYRGGFELGTVAYNCILDCVSK----LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK----I 323 (503)
Q Consensus 252 a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 323 (503)
|.+.|++..+.| +...+..+...|.. .++ .++|.+.|+...+.| +...+..+-..|.. .
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~-------~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~ 272 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD-------YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGA 272 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-------HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC-------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCC
Confidence 999999999875 56677777777775 333 899999999988754 45667777777777 8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---C
Q 042598 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA-----ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE---R 395 (503)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~ 395 (503)
++.++|+.+|++..+.| +...+..+...|... ++.++|...++...+.| +...+..+-..|...| +
T Consensus 273 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 99999999999998765 556777788888877 89999999999999865 4567777888887766 8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCccCcccc-cchHHHhcCchhhhccc
Q 042598 396 IEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA----HNRVDKANALFDEAVRNGVEVKPKEY-RVDPRYLKKPIAVKKGK 470 (503)
Q Consensus 396 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~~~ 470 (503)
.++|.++|++..+. .+...+..|-..|.. .++.++|.+.|++..+.|. +..+ ++-..+....+..+..+
T Consensus 347 ~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~---~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL---SAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCCCCCHH
Confidence 89999999999986 367888889999988 8999999999999999873 3333 33233333212234444
Q ss_pred ccccHHHHHHHHH
Q 042598 471 KRETLPEKMARKR 483 (503)
Q Consensus 471 ~~~~l~~~~~~~~ 483 (503)
.+....++..+..
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 4445444444443
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=4.1e-11 Score=121.60 Aligned_cols=183 Identities=9% Similarity=0.019 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-------cCCCCCCCCcHH-------HHHHHHHHHHhCCCCCChhhHHHH
Q 042598 251 EAKRLAREMYRGGFELGTVAYNCILDCVSK-------LCRKKDPFRLDS-------EAEKVLLDMEYNGVPRNVETFNVL 316 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~~~~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~l 316 (503)
++..+|++..... +-+...|......+.+ .|+ ++ +|..+|++..+.-.+.+...|..+
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~-------~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGD-------MNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccc-------hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 4555666655431 2245566666666654 455 44 889999988763234568899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcc
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEWGCHPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR-LCGI 393 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~ 393 (503)
+..+.+.|++++|..+|++..+. .|+ ...|...+..+.+.|++++|.++|+...+.. ..+...|...... +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 99999999999999999999884 454 2578888888889999999999999998852 1223333332222 3468
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999999999887652 3468899999999999999999999999999875
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.6e-12 Score=116.71 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc---CCCCC----HHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN---EIFPD----DKI 235 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~p~----~~~ 235 (503)
...+..+...+...|++++|+..|++..+. . .+...|..+..+|...|++++|...+++... ...++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 456777778888888888888888888776 3 6777888888888888888888888887643 11122 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNV 315 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 315 (503)
|..+...|...|++++|...|++..+. .|+. ..+.+.|+ +++|...++...... +.+...|..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~-------~~~a~~~~~~~~~~~-~~~~~~~~~ 144 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRN-------AEKELKKAEAEAYVN-PEKAEEARL 144 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHH-------HHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhH-------HHHHHHHHHHHHHcC-cchHHHHHH
Confidence 777888888888888888888887763 3442 23444454 667777777766543 134456666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 042598 316 LISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER 395 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 395 (503)
+...|...|++++|+..|++..+.. ..+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh
Confidence 6777777777777777777766643 2245666666667777777777777777666642 2235556666666666666
Q ss_pred HHHHHHHHHHHHh
Q 042598 396 IEQAMSVFEKMKT 408 (503)
Q Consensus 396 ~~~A~~~~~~m~~ 408 (503)
+++|.+.|++..+
T Consensus 223 ~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 223 YASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2e-12 Score=117.52 Aligned_cols=227 Identities=12% Similarity=0.009 Sum_probs=191.6
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGF--ELG----TVAYN 272 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 272 (503)
...|..+...+...|++++|..+|++..+.. .+..+|..+...|...|++++|.+.+++..+..- .++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4567888889999999999999999986633 8889999999999999999999999999886421 112 57889
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLI 352 (503)
Q Consensus 273 ~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 352 (503)
.+...|.+.|+ +++|.+.|+...... |+ ...+.+.|++++|...++++.... ..+...+..+.
T Consensus 84 ~l~~~~~~~~~-------~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 146 (258)
T 3uq3_A 84 RIGNAYHKLGD-------LKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHTTC-------HHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHH
T ss_pred HHHHHHHHccc-------HHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHH
Confidence 99999999988 899999999988743 44 245677789999999999998753 22457788889
Q ss_pred HHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 042598 353 KSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVD 432 (503)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 432 (503)
..+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|.+.|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999998854 3467889999999999999999999999998753 446788999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 042598 433 KANALFDEAVRNG 445 (503)
Q Consensus 433 ~A~~~~~~m~~~g 445 (503)
+|.+.+++..+..
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
No 34
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=3.8e-11 Score=110.44 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=139.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV----DGKLDEAKRLAREMYRGGFELGTVAYNCI 274 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 274 (503)
..++..+-..|...|++++|+..|++..+ .-+...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444455555555555555555555443 1233445555555555 566666666666655544 44555555
Q ss_pred HHHHHh----cCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 042598 275 LDCVSK----LCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK----IRRSEDAIKLFYRMGEWGCHPNET 346 (503)
Q Consensus 275 i~~~~~----~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ 346 (503)
-..|.. .++ .++|.+.|+...+.+ +...+..+...|.. .+++++|+..|++..+.+ +..
T Consensus 81 g~~~~~g~~~~~~-------~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 81 GNLYYSGQGVSQN-------TNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHTSSSCCC-------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHhCCCCcccC-------HHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 555555 444 566666666665543 45556666666666 677777777777766654 445
Q ss_pred HHHHHHHHHHH----hCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042598 347 TFLVLIKSLYQ----AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG----IERIEQAMSVFEKMKTDGHNPDSETY 418 (503)
Q Consensus 347 t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 418 (503)
.+..+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGC 221 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHH
Confidence 56666666666 677777777777776653 45566666677777 777777777777777653 25666
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 042598 419 DLLMTKWCA----HNRVDKANALFDEAVRNG 445 (503)
Q Consensus 419 ~~li~~~~~----~g~~~~A~~~~~~m~~~g 445 (503)
..+...|.. .+++++|.+.|++..+.|
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 667777777 777888888887777766
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=8.9e-12 Score=110.58 Aligned_cols=95 Identities=12% Similarity=-0.040 Sum_probs=39.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC 391 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 391 (503)
.|..+...|...|++++|+..|+++.+.. ..+...+..+...+...|++++|.+.++.+.+.....+...+..+...+.
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK 193 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444443321 11233444444444444444444444444443211123333333444444
Q ss_pred ccCCHHHHHHHHHHHH
Q 042598 392 GIERIEQAMSVFEKMK 407 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~ 407 (503)
..|+.+.|..+++.+.
T Consensus 194 ~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 194 ALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHH
Confidence 4444444444444443
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=8.9e-12 Score=113.01 Aligned_cols=59 Identities=7% Similarity=-0.074 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
.|..+...|...|++++|++.|+++.+. .+.+...+..+...|...|++++|.+.|++.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444444432 1123333444444444444444444444433
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=2.7e-12 Score=113.91 Aligned_cols=210 Identities=10% Similarity=-0.013 Sum_probs=131.7
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 042598 197 RDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILD 276 (503)
Q Consensus 197 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 276 (503)
++...+..+-..+.+.|++++|+..|++.....+.+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445555555566666666666666666554444455556666666666666666666666655432 112334444433
Q ss_pred HHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 277 CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356 (503)
Q Consensus 277 ~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 356 (503)
++.+.+... .+ .+...|++++|+..|++..+... -+...+..+...+.
T Consensus 82 ~~~~~~~~~----------------------~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 82 AYVALYRQA----------------------ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHTC----------------------SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHhhhhh----------------------hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 333321100 00 01123899999999999887532 25678888888999
Q ss_pred HhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042598 357 QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
..|++++|...|++..+.. .+...+..+...|...|++++|...|++..+.. +-+...+..+...+...|++++|.+
T Consensus 130 ~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 130 LLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------
T ss_pred HcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999877 688889999999999999999999999988652 4467888889999999999999999
Q ss_pred HHHHHH
Q 042598 437 LFDEAV 442 (503)
Q Consensus 437 ~~~~m~ 442 (503)
.|++..
T Consensus 207 ~~~~~~ 212 (217)
T 2pl2_A 207 AAALEH 212 (217)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 887754
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=9.4e-12 Score=112.87 Aligned_cols=200 Identities=13% Similarity=0.029 Sum_probs=114.8
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 042598 200 DSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279 (503)
Q Consensus 200 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 279 (503)
..|..+...+...|++++|.+.|++.....+.+...+..+...|...|++++|.+.++++.+.. ..+..++..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 4455555566666666666666666544333445556666666666666666666666655532 224455556666666
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 042598 280 KLCRKKDPFRLDSEAEKVLLDMEYNGVPR-NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358 (503)
Q Consensus 280 ~~g~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 358 (503)
..|+ +++|.+.|+.+...+..| +...|..+...|...|++++|...|++..+.. ..+...+..+...+...
T Consensus 117 ~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 117 EQKR-------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HTTC-------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHhH-------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 6655 566666666655422222 34455556666666666666666666655542 12355556666666666
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 359 ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
|++++|...++.+.+.. ..+...+..+...+...|+.++|.+.++++.+.
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666665532 234455555666666666666666666666543
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=8.8e-12 Score=110.63 Aligned_cols=203 Identities=11% Similarity=-0.059 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...|...|++++|++.|+.+.+. .+.+...|..+...|...|++++|.+.+++.....+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4567788888888999999999999888764 23457788888888999999999999998886644557788888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 042598 242 GWCVD-GKLDEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN 319 (503)
Q Consensus 242 ~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 319 (503)
.+... |++++|...++++.+.+..|+ ...+..+..++.+.|+ +++|.+.|+.+.+.. +.+...|..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 156 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-------FGLAEAYLKRSLAAQ-PQFPPAFKELART 156 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC-CCCchHHHHHHHH
Confidence 99999 999999999999887433343 5678888888888888 888999988887643 2357788888899
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
|.+.|++++|..+|++..+.....+...+..+...+...|+.+++..+++.+.+.
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999877543246677777788888999999999999888763
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=3.8e-13 Score=123.75 Aligned_cols=220 Identities=10% Similarity=-0.056 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHhHHhcCCC--CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042598 177 GRPTQVLGFFERMERDYGFK--RDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKR 254 (503)
Q Consensus 177 g~~~~A~~~f~~m~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 254 (503)
|++++|++.|+++.+..... .+..+|..+...+...|++++|...|++.....+.+..+|..+...|...|++++|..
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 44455555555544320000 1233444444445555555555555544433222334444445555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 042598 255 LAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFY 334 (503)
Q Consensus 255 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 334 (503)
.|++..+.. +.+..++..+..+|.+.|+ +++|.+.|+.+.+.. |+...+...+..+...|++++|...|+
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGR-------DKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555444421 1123344444444444444 444444444443321 222222222223333444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 335 RMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA---IGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 335 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
+..... .++...+ .++..+...++.++|.+.+..+.+.... .+...+..+...|.+.|++++|...|++..+
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 443321 1122222 2333334444444444444443321100 0123444455555555555555555555553
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=4.7e-12 Score=112.35 Aligned_cols=211 Identities=13% Similarity=-0.023 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHH
Q 042598 160 VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239 (503)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~l 239 (503)
+++...+..+...+.+.|++++|+..|++..+. -+.+...|..+-..+.+.|++++|+..|++.....+.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 356778899999999999999999999998863 344678899999999999999999999999876445566777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN 319 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 319 (503)
...+...+. . ..+ .+...|+ +++|...|+...+.. +.+...|..+-..
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~-------~~~A~~~~~~al~~~-P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGY-------LEQALSVLKDAERVN-PRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHH-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccC-------HHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 777665420 0 011 1122355 889999999887754 2467788999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 399 (503)
|...|++++|+..|++..+.+ .+...+..+..++...|++++|...|+.+.+.. +-+...+..+...+...|++++|
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------
T ss_pred HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHH
Confidence 999999999999999998887 688899999999999999999999999998853 33667888899999999999999
Q ss_pred HHHHHHHH
Q 042598 400 MSVFEKMK 407 (503)
Q Consensus 400 ~~~~~~m~ 407 (503)
.+.|++..
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99988754
No 42
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=1.5e-10 Score=123.42 Aligned_cols=303 Identities=13% Similarity=0.093 Sum_probs=154.8
Q ss_pred CCCHHHHHHHHccCCchhHHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCC-----HHHHH
Q 042598 94 TPTPSLVQSTLNFSPEAGRAILGFNHWLTQN-ANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLG-----PKTLA 167 (503)
Q Consensus 94 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 167 (503)
+-++.+|..+|....... .++.+|...- ..-..++.-....+++|...|+..++.+++++.-..++ ....+
T Consensus 950 r~d~~lW~~vl~~~n~~R---R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqn 1026 (1630)
T 1xi4_A 950 RKDPELWGSVLLESNPYR---RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQN 1026 (1630)
T ss_pred hcCHHHHHHHhcCCcHHH---HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHH
Confidence 356777887776544332 2344554320 11235566667788888888888888888887643332 23333
Q ss_pred HHHH---------------------------HHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHH
Q 042598 168 SCID---------------------------RLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEK 220 (503)
Q Consensus 168 ~li~---------------------------~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 220 (503)
.|+. .+...|.+++|..+|++... .....+.++. ..|++++|.+
T Consensus 1027 lLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE 1097 (1630)
T 1xi4_A 1027 LLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYE 1097 (1630)
T ss_pred HHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHH
Confidence 3433 33445666666666655321 1111111111 3333444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 042598 221 LVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLD 300 (503)
Q Consensus 221 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~ 300 (503)
+.++. -+..+|..+..++.+.|++++|.+.|.+. -|...|..++.++.+.|+ +++|.+.+..
T Consensus 1098 ~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGk-------yEEAIeyL~m 1159 (1630)
T 1xi4_A 1098 FAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN-------WEELVKYLQM 1159 (1630)
T ss_pred HHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCC-------HHHHHHHHHH
Confidence 33322 22445555555555555555555555432 244455555555555555 4555555544
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH
Q 042598 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK 380 (503)
Q Consensus 301 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 380 (503)
..+.. ++....+.++.+|++.+++++..... + .++...|..+...|...|++++|..+|..+
T Consensus 1160 Ark~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1160 ARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred HHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 33322 22222233555555555554322221 1 223344444555555555555555555543
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC------------------------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042598 381 KDYYEFLTRLCGIERIEQAMSVFEKMKTD------------------------GHNPDSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------g~~p~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
..|..+...|++.|++++|.+.+++.... ++..+...+..++..|.+.|.+++|+.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 24555555555555555555544433210 122355566788888888999999998
Q ss_pred HHHHHHHC
Q 042598 437 LFDEAVRN 444 (503)
Q Consensus 437 ~~~~m~~~ 444 (503)
+++..+..
T Consensus 1302 LlE~aL~L 1309 (1630)
T 1xi4_A 1302 MLEAALGL 1309 (1630)
T ss_pred HHHHHhcc
Confidence 88766543
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.4e-10 Score=106.53 Aligned_cols=224 Identities=10% Similarity=-0.004 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHh----CCChhHHHHHHHHHhcCCCCCHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCE----NGYASYAEKLVKDTANEIFPDDKICD 237 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~p~~~~~~ 237 (503)
+..++..+-..|...|++++|++.|++..+. -+...+..+-..|.. .+++++|...|++..+. -+...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 5667777777888888888888888887762 456777777788888 88888888888887552 2677778
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCCCCCCCcHHHHHHHHHHHHhCCCCCC
Q 042598 238 LLIKGWCV----DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK----LCRKKDPFRLDSEAEKVLLDMEYNGVPRN 309 (503)
Q Consensus 238 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~~~~~~~~a~~~~~~m~~~g~~~~ 309 (503)
.+...|.. .+++++|++.|++..+.+ +...+..+-..|.. .++ .++|.+.|+...+.+ +
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~-------~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRD-------FKKAVEYFTKACDLN---D 145 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-------HHHHHHHHHHHHHTT---C
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccC-------HHHHHHHHHHHHhcC---c
Confidence 88888888 888888888888888765 66777777777777 555 788888888887754 5
Q ss_pred hhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHcCCCCCHH
Q 042598 310 VETFNVLISNLCK----IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ----AARVGEGDEMIDRMKSAGYAIGKK 381 (503)
Q Consensus 310 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~ 381 (503)
...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.++...+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 5667777777777 888999999998887764 45677778888888 889999999998888854 366
Q ss_pred HHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 042598 382 DYYEFLTRLCG----IERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 382 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 410 (503)
.+..+...|.+ .++.++|.+.|++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777888888 889999999998887653
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.2e-11 Score=113.43 Aligned_cols=233 Identities=9% Similarity=-0.075 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCC----HHHHHHH
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPD----DKICDLL 239 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~----~~~~~~l 239 (503)
..+......+...|++++|+..|++..+. .+.+...+..+...|...|++++|+..+++... ..++ ...|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 34445556667777777777777777653 122344666677777777777777777777654 1122 2336667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN 319 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 319 (503)
...+...|++++|.+.|++..+.. +.+..++..+...|...|+ +++|.+.|++..+.. +.+...|..+...
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-------FPLAIQYMEKQIRPT-TTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-------HHHHHHHHGGGCCSS-CCCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-------HHHHHHHHHHHhhcC-CCcHHHHHHHHHH
Confidence 777777777777777777766542 2234566666666666666 666666666655442 2344455555523
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHc-CCCCC------HHHHHHHHHH
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR---VGEGDEMIDRMKSA-GYAIG------KKDYYEFLTR 389 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~-g~~~~------~~~~~~li~~ 389 (503)
+...+++++|++.|++..+.. +.+...+..+...+...|+ +++|...++++.+. .-.|+ ...|..+...
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 333346777777776666542 1134555555566666665 56666666665553 11122 1345555555
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 042598 390 LCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~ 409 (503)
|...|++++|.+.|++..+.
T Consensus 231 ~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666665543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=1e-11 Score=111.72 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=36.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC 391 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 391 (503)
.|..+...|.+.|++++|+.+|+++.+.. ..+...+..+...+...|++++|...++.+.+.. ..+..++..+...|.
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYA 204 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 33333444444444444444444433321 1123333334444444444444444444433321 112333333344444
Q ss_pred ccCCHHHHHHHHHHHH
Q 042598 392 GIERIEQAMSVFEKMK 407 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~ 407 (503)
..|++++|.+.+++..
T Consensus 205 ~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 205 YKENREKALEMLDKAI 220 (243)
T ss_dssp HTTCTTHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 4444444444444333
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=4.4e-12 Score=116.54 Aligned_cols=243 Identities=8% Similarity=-0.078 Sum_probs=160.5
Q ss_pred CCChHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhH
Q 042598 144 RKDFKAIHDFLVDNKEV------LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASY 217 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 217 (503)
.+++++|...+++.-.. .+..++..+...|...|++++|++.|++..+. .+.+..+|..+...|...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHH
Confidence 35566666666654221 23556777777888888888888888887764 22356777888888888888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 042598 218 AEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297 (503)
Q Consensus 218 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~ 297 (503)
|...|++.....+.+..++..+...|...|++++|...|+++.+. .|+.......+..+...|+ .++|...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~-------~~~A~~~ 166 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLD-------EKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC-------HHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcC-------HHHHHHH
Confidence 888888776544456677888888888888888888888888764 3444444444455555566 7788888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 298 LLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH--P-NETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 298 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
+....... +++...| .++..+...++.++|++.+++..+.... | +..++..+...+...|++++|...|+.+.+.
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 86665532 2333334 3666777778888888888877554211 1 1467777888888888888888888888774
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 042598 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVF 403 (503)
Q Consensus 375 g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 403 (503)
.|+. +.....++...|++++|.+-+
T Consensus 245 --~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred --Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 3422 222344556667777776655
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=2.6e-11 Score=111.28 Aligned_cols=237 Identities=11% Similarity=0.013 Sum_probs=188.3
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG--TVAYNCILD 276 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~ 276 (503)
...+......+...|++++|+..|++..+..+.+...+..+...|...|++++|++.+++..+.+-.++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556677889999999999999998765555666899999999999999999999999998442222 345888999
Q ss_pred HHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 277 CVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLY 356 (503)
Q Consensus 277 ~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 356 (503)
.+...|+ +++|.+.|+...+.. +.+...|..+...|...|++++|+..|++..+.. .-+...+..+...+.
T Consensus 83 ~~~~~~~-------~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 83 ILMKKGQ-------DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHTTC-------HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHccc-------HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 9999988 899999999988754 2466789999999999999999999999987762 234566666663555
Q ss_pred HhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHH
Q 042598 357 QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIER---IEQAMSVFEKMKTDG-HNPD------SETYDLLMTKWC 426 (503)
Q Consensus 357 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~ 426 (503)
..+++++|.+.++.+.+.. +.+...+..+...+...|+ .++|...+++..+.. -.|+ ...|..+...|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 6679999999999998853 2346777778888888888 888888888777431 1233 257888999999
Q ss_pred hcCChHHHHHHHHHHHHCC
Q 042598 427 AHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~g 445 (503)
..|++++|.+.|++..+..
T Consensus 233 ~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD 251 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999998865
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.2e-11 Score=111.35 Aligned_cols=201 Identities=13% Similarity=-0.002 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
....|..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|+..|++.....+.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 4456666677777777777877777777652 23356777777777777888888887777765544456677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 321 (503)
.|...|++++|.+.++++.+.. ..+...+..+...+.+.|+ .++|.+.++...+.. +.+...|..+...|.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ-------PKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 7788888888888888777643 3356677777777777777 777888777776543 235667777888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
+.|++++|+..|++..+.. ..+..++..+...+...|++++|.+.++++.+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888888888877653 235677778888888888888888888888774
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1.6e-12 Score=127.15 Aligned_cols=273 Identities=12% Similarity=0.008 Sum_probs=165.7
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCCC-H----HhHHHHHHHHHhCCChhHHHHHHHHHhc-----C-CCCCHHHHH
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRD-K----DSLRLVVEKLCENGYASYAEKLVKDTAN-----E-IFPDDKICD 237 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~-~~p~~~~~~ 237 (503)
+...+...|++++|+..|++..+. .|+ . ..|..+...|...|++++|...+++... + ......++.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334445555555555555555543 121 1 2444555555555555555555554321 0 111234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCC----------CCCCCCcHHHHHHHHHHHH
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRG----GF-ELGTVAYNCILDCVSKLCR----------KKDPFRLDSEAEKVLLDME 302 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~----------~~~~~~~~~~a~~~~~~m~ 302 (503)
.+...|...|++++|...+++..+. +- .....++..+...|...|+ ..++...+++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5555566666666666666555432 10 1123355555555555555 1111111334444443322
Q ss_pred hC----C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 303 YN----G-VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGC-HPN----ETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 303 ~~----g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
+. + .......|..+...|...|++++|+..|++..+... ..+ ..++..+...+...|++++|.+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 10 1 112345788888999999999999999998765311 112 2377888899999999999999999887
Q ss_pred HcCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 373 SAGY--A---IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD----GH-NPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 373 ~~g~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
+... . ....++..+...|...|++++|.+.+++..+. +. .....+|..+...|...|++++|.+++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6411 1 12467888889999999999999999987643 10 1113478888999999999999999999987
Q ss_pred HC
Q 042598 443 RN 444 (503)
Q Consensus 443 ~~ 444 (503)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 50
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=3.2e-10 Score=114.98 Aligned_cols=374 Identities=9% Similarity=0.044 Sum_probs=247.0
Q ss_pred CHHHHHHHHccC-CchhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc-cCCCCHHHHHHHHHHH
Q 042598 96 TPSLVQSTLNFS-PEAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN-KEVLGPKTLASCIDRL 173 (503)
Q Consensus 96 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~ 173 (503)
+..++..++... .+..+.|..+|+.+.+ -++.+...|...+..+.+.|++++|..++++. ...|+...|...+...
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 345555554421 2347788999999886 34567788999999999999999999999886 3357888888777533
Q ss_pred -HHcCChhHHHH----HHHHhHHhcCCCC-CHHhHHHHHHHHHh---------CCChhHHHHHHHHHhcCCCCC---HHH
Q 042598 174 -VRAGRPTQVLG----FFERMERDYGFKR-DKDSLRLVVEKLCE---------NGYASYAEKLVKDTANEIFPD---DKI 235 (503)
Q Consensus 174 -~~~g~~~~A~~----~f~~m~~~~~~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~p~---~~~ 235 (503)
...|+.+.|.+ +|+......|..| +...|...+....+ .|+++.|..+|++... . |+ ...
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~-P~~~~~~~ 167 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N-PMINIEQL 167 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S-CCTTHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c-hhhhHHHH
Confidence 45688877765 7777765445543 56778887776654 6889999999998866 2 33 234
Q ss_pred HHHHHHHHH-------------hcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHHhcCC-C
Q 042598 236 CDLLIKGWC-------------VDGKLDEAKRLAREMY------RGG---FELG--------TVAYNCILDCVSKLCR-K 284 (503)
Q Consensus 236 ~~~li~~~~-------------~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~~~g~-~ 284 (503)
|........ +.++++.|..++.++. +.. +.|+ ...|...+...-..+. .
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 443333211 2345667777776633 111 2333 2345554433222111 0
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHH
Q 042598 285 KDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK-------IRRSE-------DAIKLFYRMGEWGCHPNETTFLV 350 (503)
Q Consensus 285 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~t~~~ 350 (503)
++.......+..+|++..... +.+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 010001236667787776542 3567788888888775 79987 89999999876322335788888
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHh
Q 042598 351 LIKSLYQAARVGEGDEMIDRMKSAGYAIG--KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMT-KWCA 427 (503)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~ 427 (503)
++..+.+.|++++|..+|+.+.+. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|..... .+..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHH
Confidence 999999999999999999999984 454 2578889999999999999999999998752 223333333222 2346
Q ss_pred cCChHHHHHHHHHHHHCCCccC-cccccchHHHhcCchhhhcccccccHHHHHHHH
Q 042598 428 HNRVDKANALFDEAVRNGVEVK-PKEYRVDPRYLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 428 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
.|+.++|..+|++..+.. |+ +..+..+...... .+..+.+..++++....
T Consensus 404 ~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~---~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTT---TTCHHHHHHHHHHHHHS
T ss_pred cCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHh---CCCHhhHHHHHHHHHhc
Confidence 899999999999988754 43 3444444444443 34455566666666553
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.2e-10 Score=116.10 Aligned_cols=323 Identities=11% Similarity=-0.011 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHHhh-------CCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhcc-------C---CCCHHHHHHHHHH
Q 042598 110 AGRAILGFNHWLTQ-------NANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNK-------E---VLGPKTLASCIDR 172 (503)
Q Consensus 110 ~~~~a~~~~~~~~~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~---~~~~~~~~~li~~ 172 (503)
..+.|++.|+...+ .........+|+.+..+|...|++++|...+++.- . .....+++.+..+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 35677777766532 01123346789999999999999999988877541 1 1245677766666
Q ss_pred HHHc--CChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHH---HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 042598 173 LVRA--GRPTQVLGFFERMERDYGFKRD-KDSLRLVVEK---LCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVD 246 (503)
Q Consensus 173 ~~~~--g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 246 (503)
+... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|++.+++...-.+.+..++..+...+...
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred HHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 6665 4689999999998865 454 4444444433 45678888898888877553345566666665555544
Q ss_pred ----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 042598 247 ----GKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCK 322 (503)
Q Consensus 247 ----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 322 (503)
|++++|.+.+++..... +.+..++..+...|.+.|+ .++|...+....+.. +-+..+|..+...|..
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE-------PDKAIELLKKALEYI-PNNAYLHCQIGCCYRA 293 (472)
T ss_dssp C------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc-------hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 67889999999887653 4456788889999999988 889999998887643 2345566666555532
Q ss_pred c-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH--
Q 042598 323 I-------------------RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK-- 381 (503)
Q Consensus 323 ~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-- 381 (503)
. +..++|...|++..+.+ ..+..++..+...+...|++++|.+.|++..+....+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 23567788888776653 2245677888899999999999999999998854332221
Q ss_pred HHHHHHH-HHHccCCHHHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 042598 382 DYYEFLT-RLCGIERIEQAMSVFEKMKTDG-----------------------HNPDSETYDLLMTKWCAHNRVDKANAL 437 (503)
Q Consensus 382 ~~~~li~-~~~~~g~~~~A~~~~~~m~~~g-----------------------~~p~~~~~~~li~~~~~~g~~~~A~~~ 437 (503)
.+..+.. .+...|+.++|+..|++..+.. -+.+..+|..|...|...|++++|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222222 2346789999999888776531 122345666666677777777777777
Q ss_pred HHHHHHCC
Q 042598 438 FDEAVRNG 445 (503)
Q Consensus 438 ~~~m~~~g 445 (503)
|++.++.|
T Consensus 453 y~kALe~~ 460 (472)
T 4g1t_A 453 SERGLESG 460 (472)
T ss_dssp --------
T ss_pred HHHHHhcC
Confidence 77766654
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1e-09 Score=109.35 Aligned_cols=311 Identities=11% Similarity=-0.009 Sum_probs=215.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCChHHHHHHHHhc--------c---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhc-
Q 042598 126 NFSHTDETLSFFTDYFGRRKDFKAIHDFLVDN--------K---EVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDY- 193 (503)
Q Consensus 126 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~---~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~- 193 (503)
+.......|+.+-..+...|+.++|.+.+++. + ......+|+.+...|...|++++|+..|++..+..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 33445678999999999999999999888754 1 12346789999999999999999999998875420
Q ss_pred --C--CC-CCHHhHHHHHHHHHh--CCChhHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC
Q 042598 194 --G--FK-RDKDSLRLVVEKLCE--NGYASYAEKLVKDTANEIFPDDKICDLLIKG---WCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 194 --~--~~-~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g 263 (503)
. .. ....+++.+-.++.. .+++++|++.|++....-+-+...+..+..+ +...++.++|++.+++..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 11 134556555555554 4578999999998865333344555544444 445678889999999887653
Q ss_pred CCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 042598 264 FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343 (503)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (503)
+.+..++..+...+...+... +..++|.+.+++..... +.+...+..+...|...|++++|+..|++..+... -
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~---~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 279 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEG---EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-N 279 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T
T ss_pred -CcchHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-C
Confidence 334566666666666655432 22668899888876644 35677889999999999999999999999887532 2
Q ss_pred CHHHHHHHHHHHHH-------------------hCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 042598 344 NETTFLVLIKSLYQ-------------------AARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFE 404 (503)
Q Consensus 344 ~~~t~~~li~~~~~-------------------~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 404 (503)
+..++..+..+|.. .+..++|...++...+.. ..+...+..+...|...|++++|.+.|+
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 45566655555432 223567788888777643 2345677888999999999999999999
Q ss_pred HHHhCCCCCCHHH----HHHHHH-HHHhcCChHHHHHHHHHHHHCC
Q 042598 405 KMKTDGHNPDSET----YDLLMT-KWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 405 ~m~~~g~~p~~~~----~~~li~-~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+..+. .|+... +..+.. .+...|+.++|+..|++..+..
T Consensus 359 kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 359 KEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 98875 344332 222222 3457799999999999887653
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=6.2e-12 Score=118.80 Aligned_cols=277 Identities=13% Similarity=0.008 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-----HHhHHHHHHHHHhCCChhHHHHHHHHHhc-----CCC-CCH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-----KDSLRLVVEKLCENGYASYAEKLVKDTAN-----EIF-PDD 233 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~-p~~ 233 (503)
.+......+...|++++|+..|++..+. .|+ ...+..+...|...|++++|.+.+++... +.. ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3444456677788888888888887764 222 35677777778888888888887776522 111 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCC-------------CCCCCCcHHHHH
Q 042598 234 KICDLLIKGWCVDGKLDEAKRLAREMYRG----GFEL-GTVAYNCILDCVSKLCR-------------KKDPFRLDSEAE 295 (503)
Q Consensus 234 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~-------------~~~~~~~~~~a~ 295 (503)
.++..+...|...|++++|...+++..+. +-.+ ...++..+...|...|+ ...+...+++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56777777888888888888888776542 1111 13366677777777766 111111134555
Q ss_pred HHHHHHHhC----C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHH
Q 042598 296 KVLLDMEYN----G-VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW----GCHP-NETTFLVLIKSLYQAARVGEGD 365 (503)
Q Consensus 296 ~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~ 365 (503)
+.+++.... + .......+..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555443221 1 1122457888889999999999999999987643 1111 1247888889999999999999
Q ss_pred HHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHH
Q 042598 366 EMIDRMKSAGY-AIG----KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGH-NPD----SETYDLLMTKWCAHNRVDKAN 435 (503)
Q Consensus 366 ~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~ 435 (503)
..+++..+... ..+ ..++..+...|...|++++|.+.+++..+..- ..+ ..++..+...|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 99998876311 111 45778888999999999999999998764310 111 347788999999999999999
Q ss_pred HHHHHHHHC
Q 042598 436 ALFDEAVRN 444 (503)
Q Consensus 436 ~~~~~m~~~ 444 (503)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998875
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=7e-12 Score=122.14 Aligned_cols=280 Identities=13% Similarity=-0.018 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCC-C----HHhHHHHHHHHHhCCChhHHHHHHHHHhc-----CCCC
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKR-D----KDSLRLVVEKLCENGYASYAEKLVKDTAN-----EIFP 231 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~p 231 (503)
....+......+...|++++|+..|++..+. .| + ..+|..+...|...|++++|...+++... +..|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4445556666677777777777777777664 22 2 24566677777777777777777776421 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCC-------------CCCCCCcHH
Q 042598 232 -DDKICDLLIKGWCVDGKLDEAKRLAREMYRG----GFE-LGTVAYNCILDCVSKLCR-------------KKDPFRLDS 292 (503)
Q Consensus 232 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~-------------~~~~~~~~~ 292 (503)
...++..+...|...|++++|...+++..+. +-. ....++..+...|...|+ ...+...++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2345666777777778888887777766542 100 013366666666766666 111111134
Q ss_pred HHHHHHHHHHh----CCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHhCCHh
Q 042598 293 EAEKVLLDMEY----NGV-PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG-CHPN----ETTFLVLIKSLYQAARVG 362 (503)
Q Consensus 293 ~a~~~~~~m~~----~g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~li~~~~~~~~~~ 362 (503)
+|.+.+.+... .+. +....+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 45544444322 111 1224578888899999999999999999876531 0112 247888889999999999
Q ss_pred HHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChH
Q 042598 363 EGDEMIDRMKSAGY-AIG----KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGH-NPD----SETYDLLMTKWCAHNRVD 432 (503)
Q Consensus 363 ~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~ 432 (503)
+|...+++..+... ..+ ..++..+...|...|++++|.+.+++..+..- ..+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998876311 111 45778889999999999999999998764310 112 557888899999999999
Q ss_pred HHHHHHHHHHHC
Q 042598 433 KANALFDEAVRN 444 (503)
Q Consensus 433 ~A~~~~~~m~~~ 444 (503)
+|.+.+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=8.7e-11 Score=113.08 Aligned_cols=230 Identities=8% Similarity=-0.070 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCC-hhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGY-ASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
...|+.+...+.+.|++++|++.|++..+. -+-+...|+.+-.++...|+ +++|+..|++.....+-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 345555666666667777777777766653 12245566666666666665 667766666665544445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 321 (503)
++...|++++|+..|+++.+.. .-+...|..+..++.+.|+ +++|...|+.+.+... .+...|+.+..+|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~-------~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL-------WDNELQYVDQLLKEDV-RNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-------CTTHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 6666666666666666666542 2245556666666666665 4456666665554432 34556666666666
Q ss_pred c-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHhC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 042598 322 K-IRRSEDA-----IKLFYRMGEWGCHPNETTFLVLIKSLYQAA--RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393 (503)
Q Consensus 322 ~-~g~~~~A-----~~l~~~m~~~g~~p~~~t~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 393 (503)
+ .|..++| ++.|++..+... -+...|..+...+...| ++++|.+.+..+ + ....+...+..+.+.|.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHH
Confidence 6 4443555 355555554321 13445555555555555 456666666555 2 2223345555566666554
Q ss_pred C---------CHHHHHHHHHHH
Q 042598 394 E---------RIEQAMSVFEKM 406 (503)
Q Consensus 394 g---------~~~~A~~~~~~m 406 (503)
| ..++|.++++++
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHH
Confidence 2 246666666666
No 56
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.39 E-value=5.5e-10 Score=119.27 Aligned_cols=280 Identities=10% Similarity=0.060 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 042598 110 AGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERM 189 (503)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 189 (503)
..++|..+|+.... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++.|.+.
T Consensus 1064 lyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 35677777766421 1222333333 4456666666666542 4666677777777777777777776442
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 042598 190 ERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTV 269 (503)
Q Consensus 190 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 269 (503)
-|...|.-++.+|.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+. + .++..
T Consensus 1132 -------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a 1196 (1630)
T 1xi4_A 1132 -------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNA 1196 (1630)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH
Confidence 355666667777777777777777776543322 22222333666666666655433221 1 23344
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----------
Q 042598 270 AYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW---------- 339 (503)
Q Consensus 270 ~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------- 339 (503)
.|..+-+.|...|+ +++|...|... ..|..+...|++.|++++|.+.+++....
T Consensus 1197 d~~~iGd~le~eg~-------YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKM-------YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455555555555 55666666542 25555666666666666665555443110
Q ss_pred --------------CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHH
Q 042598 340 --------------GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG--IERIEQAMSVF 403 (503)
Q Consensus 340 --------------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~ 403 (503)
++.-+...+..++..|.+.|.+++|..+++...... .-....|+-+...|++ -+++.++.+.|
T Consensus 1261 ve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 122244556677777888888888888887665432 2233456556666655 44555666665
Q ss_pred HHHHhCCCCC------CHHHHHHHHHHHHhcCChHHHH
Q 042598 404 EKMKTDGHNP------DSETYDLLMTKWCAHNRVDKAN 435 (503)
Q Consensus 404 ~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~ 435 (503)
..-.. ++| +...|..++..|.+.|+++.|.
T Consensus 1340 ~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1340 WSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 53221 233 4567999999999999999887
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=1.1e-10 Score=112.39 Aligned_cols=234 Identities=9% Similarity=0.001 Sum_probs=192.6
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGK-LDEAKRLAREMYRGGFELGTVAYNCILDC 277 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 277 (503)
...|+.+-..+.+.|++++|+..|++.....+-+...|+.+...+...|+ +++|+..|++..+.. .-+...|..+-.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45677777888999999999999999876555678899999999999997 999999999999853 3367889999999
Q ss_pred HHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042598 278 VSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ 357 (503)
Q Consensus 278 ~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 357 (503)
+.+.|+ +++|...|+...+.. +.+...|..+..++.+.|++++|+..|+++.+.... +...|+.+..++..
T Consensus 176 ~~~~g~-------~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 176 VEWLRD-------PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHTC-------CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHccC-------HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 999998 678888888887754 357889999999999999999999999999987533 67889999999988
Q ss_pred -hCCHhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042598 358 -AARVGEG-----DEMIDRMKSAGYAIGKKDYYEFLTRLCGIE--RIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429 (503)
Q Consensus 358 -~~~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (503)
.|..++| .+.++..++.. .-+...|+.+...+...| +.++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 6665887 48888888743 235678888888898888 689999999998 33 3556788889999998874
Q ss_pred ---------ChHHHHHHHHHH-HHCC
Q 042598 430 ---------RVDKANALFDEA-VRNG 445 (503)
Q Consensus 430 ---------~~~~A~~~~~~m-~~~g 445 (503)
..++|+++|+++ .+..
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC
Confidence 258999999998 5543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=5.8e-11 Score=115.57 Aligned_cols=297 Identities=11% Similarity=-0.037 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHhccC-CC-C----HHHHHHHHHHHHHcCChhHHHHHHHHhHHhc---CCCC-
Q 042598 128 SHTDETLSFFTDYFGRRKDFKAIHDFLVDNKE-VL-G----PKTLASCIDRLVRAGRPTQVLGFFERMERDY---GFKR- 197 (503)
Q Consensus 128 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~- 197 (503)
......+......+...|++++|...+++.-. .| + ..++..+...|...|++++|+..|++..+.. +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34566677777888999999999999987521 22 3 3578888999999999999999998865421 1111
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 042598 198 DKDSLRLVVEKLCENGYASYAEKLVKDTANE--IFPD----DKICDLLIKGWCVDGK--------------------LDE 251 (503)
Q Consensus 198 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~--------------------~~~ 251 (503)
...++..+...|...|++++|...+++...- -..+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2457888889999999999999999876331 0012 4578888999999999 999
Q ss_pred HHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHH
Q 042598 252 AKRLAREMYRG----GFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----GVP-RNVETFNVLISNLC 321 (503)
Q Consensus 252 a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~ 321 (503)
|.+.+.+..+. +..+ ...++..+...|...|+ +++|.+.+++..+. +.. ....+|..+...|.
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99998876642 2122 24578888888999988 77888888776532 111 11347888899999
Q ss_pred ccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 042598 322 KIRRSEDAIKLFYRMGEW----GCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY-AIG----KKDYYEFLTRLC 391 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~ 391 (503)
..|++++|...|++..+. +..+. ..++..+...+...|++++|.+.++...+..- ..+ ..++..+...|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999987643 11111 46788889999999999999999998876411 112 457788889999
Q ss_pred ccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCh
Q 042598 392 GIERIEQAMSVFEKMKTD----GHNP-DSETYDLLMTKWCAHNRV 431 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~ 431 (503)
..|++++|.+.+++..+. |..+ ...++..+...+...|+.
T Consensus 319 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999999999999986632 1111 234556666666666654
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=6.5e-12 Score=117.53 Aligned_cols=240 Identities=13% Similarity=0.060 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhc------CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDY------GFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKIC 236 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~ 236 (503)
..++..+...|...|++++|+.+|+++.+.. .......++..+...|...|++++|...+++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------ 94 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND------------ 94 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH------------
Confidence 4456666666666666666666666655410 0111233444555555555555555555544
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC-----
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYRG------GF-ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----- 304 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----- 304 (503)
..+. +- .....++..+...|...|+ +++|.+.|++..+.
T Consensus 95 ----------------------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 95 ----------------------ALAIREKTLGKDHPAVAATLNNLAVLYGKRGK-------YKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp ----------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc-------HHHHHHHHHHHHHHHHHhc
Confidence 3321 11 1123344455555555554 44444444443321
Q ss_pred --CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-
Q 042598 305 --GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW------GCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSA- 374 (503)
Q Consensus 305 --g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~- 374 (503)
..+.....+..+...|...|++++|+++|++..+. +..| ...++..+...+...|++++|.+.++++.+.
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11234567888889999999999999999998764 2233 2457888899999999999999999998863
Q ss_pred ------CCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 375 ------GYAIGK-------KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 375 ------g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
...+.. ..+..+...+...+.+.+|...++...... +.+..+|..+...|.+.|++++|.++|++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111111 223333344445566666777777666431 335577889999999999999999999988
Q ss_pred HHC
Q 042598 442 VRN 444 (503)
Q Consensus 442 ~~~ 444 (503)
.+.
T Consensus 305 l~l 307 (311)
T 3nf1_A 305 MRS 307 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=1.4e-09 Score=101.86 Aligned_cols=184 Identities=8% Similarity=0.032 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHccCCHH
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN-VE-TFNVLISNLCKIRRSE 327 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~ 327 (503)
++|..+|++..+.-.+-+...|..+...+.+.|+ +++|.++|++..+. .|+ .. .|..+...+.+.|+++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMK-------YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHH
Confidence 4444444444431001123344444444444444 44444444444432 121 11 4555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 042598 328 DAIKLFYRMGEWGCHPNETTFLVLIKSLY-QAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM 406 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 406 (503)
+|..+|++..+.+. .+...|........ ..|+.++|.++|+...+.. +-+...|..++..+.+.|+.++|..+|++.
T Consensus 152 ~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 152 SGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555554321 12233322222211 2466666666666665531 124555666666666666666666666666
Q ss_pred HhCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 407 KTDG-HNP--DSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 407 ~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 230 l~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6542 233 3456666666666666666666666666654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=1.4e-10 Score=113.28 Aligned_cols=270 Identities=12% Similarity=-0.027 Sum_probs=198.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhcc-CCC-CH----HHHHHHHHHHHHcCChhHHHHHHHHhHHhc---C-CCCCHHhH
Q 042598 133 TLSFFTDYFGRRKDFKAIHDFLVDNK-EVL-GP----KTLASCIDRLVRAGRPTQVLGFFERMERDY---G-FKRDKDSL 202 (503)
Q Consensus 133 ~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~-~~~~~~~~ 202 (503)
.+..+...+...|++++|...+++.- ..| +. .++..+...|...|++++|++.|++..+.. + ......++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34445567788899999999887652 122 33 478888889999999999999998876431 1 12234678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 042598 203 RLVVEKLCENGYASYAEKLVKDTAN-----E-IFPDDKICDLLIKGWCVDGK-----------------LDEAKRLAREM 259 (503)
Q Consensus 203 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m 259 (503)
..+...|...|++++|...+++... + ......++..+...|...|+ +++|.+.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 8888899999999999999887633 1 11234578888889999999 99999998886
Q ss_pred HHC----CCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHccCCHHHH
Q 042598 260 YRG----GFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV-----PRNVETFNVLISNLCKIRRSEDA 329 (503)
Q Consensus 260 ~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~A 329 (503)
.+. +..+ ...++..+...|...|+ +++|.+.+++..+... ......|..+...|...|++++|
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGD-------FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 542 2112 23577888888999888 7788888777654210 01123788899999999999999
Q ss_pred HHHHHHHHHcC--C--C-CCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHH
Q 042598 330 IKLFYRMGEWG--C--H-PNETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYA-IGKKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 330 ~~l~~~m~~~g--~--~-p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A 399 (503)
...|++..+.. . . ....++..+...+...|++++|.+.+++..+. +.. ....++..+...|...|+.++|
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999876531 1 1 11467888889999999999999999988763 111 1135778889999999999999
Q ss_pred HHHHHHHHhC
Q 042598 400 MSVFEKMKTD 409 (503)
Q Consensus 400 ~~~~~~m~~~ 409 (503)
.+.+++..+.
T Consensus 363 ~~~~~~al~~ 372 (411)
T 4a1s_A 363 LKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=3e-09 Score=99.59 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=157.6
Q ss_pred hHHHHHHHHhHHhcCCCCCHHhHHHHHHHHH-------hCCCh-------hHHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Q 042598 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLC-------ENGYA-------SYAEKLVKDTANEIFP-DDKICDLLIKGWC 244 (503)
Q Consensus 180 ~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~p-~~~~~~~li~~~~ 244 (503)
++|+.+|++..+. .+.+...|..+...+. +.|++ ++|..+|++....+.| +...|..+...+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5777788877763 2345667777776665 35775 7888888887764444 4567888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcC-HH-HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-H
Q 042598 245 VDGKLDEAKRLAREMYRGGFELG-TV-AYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL-C 321 (503)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~ 321 (503)
+.|++++|.++|++..+. .|+ .. +|..+...+.+.|+ +++|.++|+...+... .+...|....... .
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG-------IKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 180 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 888888888888888874 443 33 78888888888877 7888888888876542 3344444333322 2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHHH
Q 042598 322 KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG-YAI--GKKDYYEFLTRLCGIERIEQ 398 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~ 398 (503)
..|+.++|..+|++..+.. .-+...|..++..+.+.|++++|..+|+...+.. +.| ....|..++..+.+.|+.+.
T Consensus 181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3688999999998887652 2256778888888888899999999999888852 344 45678888888888899999
Q ss_pred HHHHHHHHHhC
Q 042598 399 AMSVFEKMKTD 409 (503)
Q Consensus 399 A~~~~~~m~~~ 409 (503)
|..+++++.+.
T Consensus 260 a~~~~~~a~~~ 270 (308)
T 2ond_A 260 ILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888764
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=4.2e-10 Score=109.03 Aligned_cols=290 Identities=10% Similarity=-0.011 Sum_probs=201.0
Q ss_pred hcCCChHHHHHHHHhccC-----CCCH--HHHHHHHHH--HHHcCChhHHH-----------HHHHHhHHhcCCCCCHHh
Q 042598 142 GRRKDFKAIHDFLVDNKE-----VLGP--KTLASCIDR--LVRAGRPTQVL-----------GFFERMERDYGFKRDKDS 201 (503)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~-----~~~~--~~~~~li~~--~~~~g~~~~A~-----------~~f~~m~~~~~~~~~~~~ 201 (503)
.+.+++++|..++++... ..|. ..|-.++.. ..-.++.+.+. +.++.+... ..+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCchh
Confidence 456788888887766421 1233 333443322 12234444444 777777643 111111
Q ss_pred ------HHHHHHHHHhCCChhHHHHHHHHHhcC---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-
Q 042598 202 ------LRLVVEKLCENGYASYAEKLVKDTANE---IFP---DDKICDLLIKGWCVDGKLDEAKRLAREMYRG----GF- 264 (503)
Q Consensus 202 ------~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~- 264 (503)
+...-..+...|++++|...|++.... ... ...+|..+...|...|++++|...+.+..+. +-
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122445677899999999999987542 221 3467888999999999999999999987752 11
Q ss_pred Cc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 265 EL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----GVP-RNVETFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 265 ~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
.+ ...+++.+...|...|+ +++|.+.|+...+. +-. ....+|+.+...|...|++++|++.|++..+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQ-------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 24578888899999998 77888877766532 111 1234788899999999999999999998866
Q ss_pred c----CC-CCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHH
Q 042598 339 W----GC-HPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYAIGKKDYYEFLTRLCGIER---IEQAMSVFEKM 406 (503)
Q Consensus 339 ~----g~-~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m 406 (503)
. +. .-...++..+...+...|++++|.+.+++..+. +-......+..+-..|...|+ +++|..++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 2 33 334577888999999999999999999988763 111222345667888888999 78888888776
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 407 KTDGHNP-DSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 407 ~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
. ..+ ....+..+...|...|++++|.+.+++..+.
T Consensus 333 ~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 333 M---LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 223 3346778889999999999999999998764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=1.9e-10 Score=108.47 Aligned_cols=270 Identities=11% Similarity=-0.027 Sum_probs=198.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhcc-CCC-C----HHHHHHHHHHHHHcCChhHHHHHHHHhHHhc---CCC-CCHHhH
Q 042598 133 TLSFFTDYFGRRKDFKAIHDFLVDNK-EVL-G----PKTLASCIDRLVRAGRPTQVLGFFERMERDY---GFK-RDKDSL 202 (503)
Q Consensus 133 ~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~-~~~~~~ 202 (503)
.+......+...|++++|...+++.- ..| + ...+..+...|...|++++|++.|++..+.. +.. ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34444566788899999999988752 222 3 4678888999999999999999998865421 111 125678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 042598 203 RLVVEKLCENGYASYAEKLVKDTANE--IFPD----DKICDLLIKGWCVDGK--------------------LDEAKRLA 256 (503)
Q Consensus 203 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~ 256 (503)
..+...|...|++++|...+++...- -.++ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 88888999999999999999886331 1122 3478888899999999 99999998
Q ss_pred HHHHHC----CCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHccCCH
Q 042598 257 REMYRG----GFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----GV-PRNVETFNVLISNLCKIRRS 326 (503)
Q Consensus 257 ~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~ 326 (503)
++.... +..+ ...++..+...+...|+ +++|.+.+++..+. +. .....++..+...|...|++
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 876542 2111 24567788888888888 77888877776532 10 11234788889999999999
Q ss_pred HHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCH
Q 042598 327 EDAIKLFYRMGEW----GCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYA-IGKKDYYEFLTRLCGIERI 396 (503)
Q Consensus 327 ~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~ 396 (503)
++|...+++..+. +..+ ...++..+...+...|++++|...+++..+. +.. ....++..+...|.+.|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999999987643 1111 1467788889999999999999999988763 111 1134677889999999999
Q ss_pred HHHHHHHHHHHhC
Q 042598 397 EQAMSVFEKMKTD 409 (503)
Q Consensus 397 ~~A~~~~~~m~~~ 409 (503)
++|.+.+++..+.
T Consensus 320 ~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 320 DQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=2.3e-10 Score=114.15 Aligned_cols=212 Identities=10% Similarity=-0.052 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHH
Q 042598 216 SYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKL-DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEA 294 (503)
Q Consensus 216 ~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a 294 (503)
++++..+++.......+...+..+...|...|++ ++|++.|++..+.. +-+...|..+..+|.+.|+ +++|
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-------~~~A 156 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD-------VTSA 156 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-------HHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC-------HHHH
Confidence 3444444444333334555555666666666666 66666666655532 2235556666666666665 5666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-------
Q 042598 295 EKVLLDMEYNGVPRNVETFNVLISNLCKI---------RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA------- 358 (503)
Q Consensus 295 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~------- 358 (503)
.+.|+...+.. |+...|..+...|... |++++|++.|++..+.. .-+...|..+..+|...
T Consensus 157 ~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 157 HTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccc
Confidence 66666665543 4455666666666666 88888888888877753 22567777788888777
Q ss_pred -CCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 042598 359 -ARVGEGDEMIDRMKSAGYA--IGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN 435 (503)
Q Consensus 359 -~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 435 (503)
|++++|.+.|++..+.... -+...|..+...|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.
T Consensus 234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888774210 367778888888888888888888888877642 335567777888888888888887
Q ss_pred HHHH
Q 042598 436 ALFD 439 (503)
Q Consensus 436 ~~~~ 439 (503)
+.+.
T Consensus 313 ~~~~ 316 (474)
T 4abn_A 313 ESKG 316 (474)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 6543
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.25 E-value=1.4e-09 Score=93.37 Aligned_cols=166 Identities=10% Similarity=-0.006 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+..+|..+-..|.+.|++++|++.|++..+. -+-+...|..+..+|.+.|++++|...++........+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 5667777777777777777777777776654 12355667777777777777777777777765544455566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLC 321 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 321 (503)
.+...++++.+.+.+.+..+.. +-+...+..+..+|.+.|+ +++|.+.|+...+.. +.+...|..+...|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGE-------HDKAIEAYEKTISIK-PGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCC-------chhHHHHHHHHHHhc-chhhhHHHHHHHHHH
Confidence 6777777777777776665532 2234555555566666655 556666666555432 234455566666666
Q ss_pred ccCCHHHHHHHHHHHHH
Q 042598 322 KIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~ 338 (503)
+.|++++|++.|++..+
T Consensus 153 ~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHh
Confidence 66666666666666554
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=3.4e-09 Score=90.81 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 042598 267 GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNET 346 (503)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (503)
+..+|..+-..|.+.|+ +++|.+.|++..+.. +-+...|..+...|.+.|++++|+..+.+...... -+..
T Consensus 4 ~~~iy~~lG~~~~~~g~-------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGD-------FDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHH
T ss_pred HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHH
Confidence 56789999999999999 899999999987754 34778899999999999999999999999887643 2567
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 347 TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 347 t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
.+..+...+...++++.+.+.+....+.. +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHH
Confidence 77778888999999999999999988853 3467788889999999999999999999988753 457788999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCccCccccc
Q 042598 427 AHNRVDKANALFDEAVRNGVEVKPKEYR 454 (503)
Q Consensus 427 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 454 (503)
+.|++++|.+.|++.++.. |+...|+
T Consensus 153 ~~g~~~~A~~~~~~al~~~--p~~a~~~ 178 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKE--EKKAKYE 178 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTT--HHHHHHC
T ss_pred HCCCHHHHHHHHHHHHhCC--ccCHHHH
Confidence 9999999999999998854 5444443
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=5.6e-10 Score=111.27 Aligned_cols=215 Identities=11% Similarity=-0.014 Sum_probs=177.7
Q ss_pred hhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh-hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042598 179 PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA-SYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAR 257 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 257 (503)
++++++.+++.... ...+...|..+-..|...|++ ++|++.|++..+..+.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777776542 234778888888999999999 999999998866444568899999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc---------CCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-----
Q 042598 258 EMYRGGFELGTVAYNCILDCVSKL---------CRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI----- 323 (503)
Q Consensus 258 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----- 323 (503)
+..+. .|+...+..+...|... |+ +++|.+.|++..+.. +.+...|..+..+|...
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~-------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRH-------VMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHH-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhh-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 99876 57778888888888888 77 889999999987754 34678899999999998
Q ss_pred ---CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 042598 324 ---RRSEDAIKLFYRMGEWGCH--PNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQ 398 (503)
Q Consensus 324 ---g~~~~A~~l~~~m~~~g~~--p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 398 (503)
|++++|++.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885310 378899999999999999999999999998853 2355678888888999999999
Q ss_pred HHHHHHHH
Q 042598 399 AMSVFEKM 406 (503)
Q Consensus 399 A~~~~~~m 406 (503)
|.+.+.++
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 88765443
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=8.2e-10 Score=103.08 Aligned_cols=243 Identities=12% Similarity=-0.053 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHhccC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC
Q 042598 129 HTDETLSFFTDYFGRRKDFKAIHDFLVDNKE----------VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD 198 (503)
Q Consensus 129 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~ 198 (503)
.+..++..+...+...|++++|..++++.-. .....++..+...|...|++++|+..|++..+..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Confidence 3457788888999999999999998876521 2245678889999999999999999999877531
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CcCHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDTANE-IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG------GF-ELGTVA 270 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~ 270 (503)
+..... ......++..+...|...|++++|.+.+++..+. +. .....+
T Consensus 100 ------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 100 ------------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp ------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 000000 0011233444455555555555555555554432 11 223556
Q ss_pred HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 042598 271 YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN------G-VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW---- 339 (503)
Q Consensus 271 ~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 339 (503)
+..+...|...|+ +++|.+.|+..... + .+....++..+...|...|++++|.+.|+++.+.
T Consensus 156 ~~~la~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 156 LNNLALLCQNQGK-------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp HHHHHHHHHTTTC-------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 7888888999888 78888888877653 1 1234567888999999999999999999998753
Q ss_pred ---CCCCCH-------HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 340 ---GCHPNE-------TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 340 ---g~~p~~-------~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
...+.. ..+..+...+...+.+.++...+...... ...+..++..+...|.+.|++++|.+.|++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122222 12222333334455556666666665542 123457788899999999999999999998764
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=2.4e-08 Score=96.36 Aligned_cols=304 Identities=9% Similarity=-0.040 Sum_probs=202.5
Q ss_pred CCHHHHHHHHHHH--hcCCChHHHHHHHHhcc-----CCCCH--HHHHHHHHH--HHHcCChhHHH---------HHHHH
Q 042598 129 HTDETLSFFTDYF--GRRKDFKAIHDFLVDNK-----EVLGP--KTLASCIDR--LVRAGRPTQVL---------GFFER 188 (503)
Q Consensus 129 ~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~-----~~~~~--~~~~~li~~--~~~~g~~~~A~---------~~f~~ 188 (503)
|+..+-..+-..| .+.+++++|..++++.. ...|. ..|-.|+.. ..-.+..+.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444444444444 56788888888877541 11233 333444332 11123333333 66666
Q ss_pred hHHhcCCCCCH-H---hHHHHHHHHHhCCChhHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042598 189 MERDYGFKRDK-D---SLRLVVEKLCENGYASYAEKLVKDTANE--IFPD----DKICDLLIKGWCVDGKLDEAKRLARE 258 (503)
Q Consensus 189 m~~~~~~~~~~-~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 258 (503)
+... ....+. . .|...-..+...|++++|+..|++...- ..++ ..++..+...|...|++++|...+.+
T Consensus 88 i~~~-~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 88 IETP-QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHGG-GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Hhcc-CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 6532 101111 1 1222334567899999999999987542 1132 45788899999999999999999998
Q ss_pred HHHC----C-CCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHccCCHH
Q 042598 259 MYRG----G-FEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----GVP-RNVETFNVLISNLCKIRRSE 327 (503)
Q Consensus 259 m~~~----g-~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~ 327 (503)
..+. + ..+ ...+++.+..+|...|+ +++|.+.|....+. +.. ....+++.+...|...|+++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH-------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 7752 1 111 24578888889999988 77888777765531 111 12457888899999999999
Q ss_pred HHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHccCC---H
Q 042598 328 DAIKLFYRMGEW----GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY----AIGKKDYYEFLTRLCGIER---I 396 (503)
Q Consensus 328 ~A~~l~~~m~~~----g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~---~ 396 (503)
+|++.|++..+. +......++..+...+.+.|++++|...+++..+..- ......+..+-..|...|+ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999988761 2222367888899999999999999999999887421 2223456666677778888 7
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 397 EQAMSVFEKMKTDGHNPD-SETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
++|+..+++.. ..++ ...+..+...|...|++++|.+.|++..+
T Consensus 320 ~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888777632 2222 34667888899999999999999998765
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=2.2e-08 Score=96.32 Aligned_cols=270 Identities=12% Similarity=0.009 Sum_probs=187.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHhc--CCCCC----HHHH
Q 042598 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK----DSLRLVVEKLCENGYASYAEKLVKDTAN--EIFPD----DKIC 236 (503)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~p~----~~~~ 236 (503)
......+...|++++|...+++...... ..+. .+++.+...+...|++++|...+++... .-..+ ..++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344456678999999999988776411 1222 2456666778888999999998887632 00122 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC---
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYRG----GFE--L-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV--- 306 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~--- 306 (503)
..+...+...|++++|.+.+++..+. +.. | ...++..+...+...|+ +++|...+++......
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-------LDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHhhccC
Confidence 67778888999999999999987752 222 2 23466677788888888 8899999988764321
Q ss_pred -CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHhCCHhHHHHHHHHHHHcCCCC-
Q 042598 307 -PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN--ETTFL----VLIKSLYQAARVGEGDEMIDRMKSAGYAI- 378 (503)
Q Consensus 307 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~~- 378 (503)
.....+|..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++...+.....
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 11235677888889999999999999998865421111 11111 23344779999999999998876643221
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 379 --GKKDYYEFLTRLCGIERIEQAMSVFEKMKTD----GHNPDS-ETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 379 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
....+..+...+...|+.++|...+++..+. |..++. ..+..+..++...|+.++|...+++..+.
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1235667788899999999999999887532 222222 35666778889999999999999988754
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=4e-09 Score=89.97 Aligned_cols=162 Identities=17% Similarity=0.067 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 042598 166 LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV 245 (503)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 245 (503)
+..+...+...|++++|++.|+++.+. .+.+...+..+...+...|++++|...+++.....+.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 334444444555555555555444321 122344444444444444444444444444433222333444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR 325 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 325 (503)
.|++++|.+.++++.+. . +.+...+..+...|...|+
T Consensus 89 ~~~~~~A~~~~~~~~~~------------------------------------------~-~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA------------------------------------------N-PINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HTCHHHHHHHHHHHHHH------------------------------------------C-TTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHhc------------------------------------------C-cHhHHHHHHHHHHHHHcCc
Confidence 44444444444444332 1 1233444444445555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
+++|.++|++..+.. ..+..++..+...+...|++++|.+.++.+.+
T Consensus 126 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 126 FDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555544432 12344445555555555555555555555443
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.16 E-value=1.2e-08 Score=100.85 Aligned_cols=340 Identities=9% Similarity=0.000 Sum_probs=217.3
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCC-----ChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhH---HH
Q 042598 112 RAILGFNHWLTQNANFSHTDETLSFFTDYFGRRK-----DFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQ---VL 183 (503)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~ 183 (503)
..|+.+|+...+ . +...+..+-..+...+ +.++|..++++.-..-+...+..|...|...+..++ +.
T Consensus 55 ~~A~~~~~~A~~-~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 55 KQAEATYRAAAD-T----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHHh-C----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 677777777765 2 4445555555343333 667888888776433344577777777877665444 44
Q ss_pred HHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHH----HHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHH
Q 042598 184 GFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEK----LVKDTANEIFPDDKICDLLIKGWCVDG---KLDEAKRLA 256 (503)
Q Consensus 184 ~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~ 256 (503)
+.+...... .+...+..+...|...+.++++.. +++.... .+...+..+...|...| +.++|++.|
T Consensus 130 ~~~~~a~~~----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~ 202 (452)
T 3e4b_A 130 QQISQWQAA----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQM 202 (452)
T ss_dssp HHHHHHHHH----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHH
Confidence 444444432 245566777777777775554444 4443333 23337888888899999 999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--HccCCHHHHHHHH
Q 042598 257 REMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISN-L--CKIRRSEDAIKLF 333 (503)
Q Consensus 257 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~l~ 333 (503)
++..+.| .++...+..|-.+|... .. .....++|.+.|+... . -+...+..+-.. | ...++.++|++.|
T Consensus 203 ~~aa~~g-~~~a~~~~~Lg~~y~~g-~~--~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 203 EAGVSRG-TVTAQRVDSVARVLGDA-TL--GTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHTCG-GG--SSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHHhCC-CC--CCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 9999887 45555556666666543 10 0122889999999887 3 455666666666 4 5689999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhC-----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 042598 334 YRMGEWGCHPNETTFLVLIKSLYQAA-----RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG----IERIEQAMSVFE 404 (503)
Q Consensus 334 ~~m~~~g~~p~~~t~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 404 (503)
++..+.| +...+..+-..|. .| ++++|.+.|+... . -+...+..|-..|.. ..+.++|.++|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 9998877 6677777777776 56 9999999999887 3 356677777777766 449999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCccCcccccchHHHhcCchhhhcccccccHHHHHH
Q 042598 405 KMKTDGHNPDSETYDLLMTKWCA----HNRVDKANALFDEAVRNGVEVKPKEYRVDPRYLKKPIAVKKGKKRETLPEKMA 480 (503)
Q Consensus 405 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 480 (503)
...+.|. ......|-..|.. ..+.++|..+|+...+.|....... +..+......+....+..+.++..
T Consensus 347 ~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~----l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 347 TAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDL----ATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHH----HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHH----HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9988763 3445556666653 4589999999999999885322211 222222223455666777777776
Q ss_pred HHHHhh
Q 042598 481 RKRRRL 486 (503)
Q Consensus 481 ~~~~~l 486 (503)
+..+.+
T Consensus 420 ~~~~~~ 425 (452)
T 3e4b_A 420 AARGTL 425 (452)
T ss_dssp HHHHHC
T ss_pred Hhcccc
Confidence 665543
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.16 E-value=4.1e-09 Score=104.32 Aligned_cols=310 Identities=12% Similarity=0.053 Sum_probs=198.5
Q ss_pred chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCh---HHHHHHHHhccCCCCHHHHHHHHHHHHHcC-----Chh
Q 042598 109 EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDF---KAIHDFLVDNKEVLGPKTLASCIDRLVRAG-----RPT 180 (503)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 180 (503)
...+.|+.+|+...+ .|. ...+..+-..|...|+. ++|..++++.-.. ++..+..|-..+...| +.+
T Consensus 17 g~~~~A~~~~~~aa~-~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAE-LGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHH-HTC---CTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCHHHHHHHHHHHHH-CCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 447789999999887 453 23333444445556666 8999999887544 7777777777565555 778
Q ss_pred HHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhH---HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042598 181 QVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASY---AEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAR 257 (503)
Q Consensus 181 ~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 257 (503)
+|++.|++..+. | +...+..|-..|...+..++ +.+.+...... -+...+..+...|...+.++++.....
T Consensus 92 ~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 999999998874 3 33377778888877765544 44444444321 234566677777877775555444433
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----CCHHHHHHHH
Q 042598 258 EMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI----RRSEDAIKLF 333 (503)
Q Consensus 258 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~l~ 333 (503)
.+.+.-...+...+..|-..|.+.|... ..++|.+.|....+.|. ++...+..+...|... +++++|+.+|
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~----~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPE----QQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcc----cHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 3332211223337788888888877211 18899999999988774 4555556677777554 7999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-H--HHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHH
Q 042598 334 YRMGEWGCHPNETTFLVLIKS-L--YQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE-----RIEQAMSVFEK 405 (503)
Q Consensus 334 ~~m~~~g~~p~~~t~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~ 405 (503)
++.. .| +...+..+-.. + ...+++++|.+.|++..+.| +...+..|-..|. .| +.++|.++|++
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 9987 44 44555555555 3 46899999999999999877 6677777777777 55 99999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 042598 406 MKTDGHNPDSETYDLLMTKWCA----HNRVDKANALFDEAVRNGV 446 (503)
Q Consensus 406 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 446 (503)
.. .-+...+..|-..|.. ..+.++|..+|++..+.|.
T Consensus 313 Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 313 AV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred Hh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 87 3466777777777766 3489999999999998874
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=6.7e-09 Score=88.54 Aligned_cols=165 Identities=15% Similarity=0.058 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhH
Q 042598 234 KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETF 313 (503)
Q Consensus 234 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 313 (503)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|+ .++|.+.++...+.. +.+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~~~~-~~~~~~~ 79 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGA-------VDRGTELLERSLADA-PDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 344555556666666666666666655432 2345566666666666666 666777766665432 2456778
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 393 (503)
..+...|...|++++|.++|+++.+.. ..+...+..+...+...|++++|.++++.+.+.. ..+...+..+...|...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc
Confidence 888889999999999999999988763 3467888889999999999999999999998864 34678899999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 042598 394 ERIEQAMSVFEKMKTD 409 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~ 409 (503)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999988754
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=4.4e-08 Score=94.23 Aligned_cols=264 Identities=11% Similarity=-0.022 Sum_probs=184.2
Q ss_pred HHHHhcCCChHHHHHHHHhc-cC--CCCHH----HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH----HhHHHHH
Q 042598 138 TDYFGRRKDFKAIHDFLVDN-KE--VLGPK----TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK----DSLRLVV 206 (503)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~-~~--~~~~~----~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~ll 206 (503)
...+...|+++++...+++. .. ..+.. +++.+...|...|++++|.+.+++..+...-..+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556788999998887764 11 12222 56667778889999999999998876531112222 3356677
Q ss_pred HHHHhCCChhHHHHHHHHHhc-----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----cCHHHHHHH
Q 042598 207 EKLCENGYASYAEKLVKDTAN-----EIF--P-DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFE----LGTVAYNCI 274 (503)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~-----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~l 274 (503)
..+...|++++|...+++... +.. | ....+..+...+...|++++|...+++.....-. ....++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 888999999999999988632 221 2 2356677888899999999999999988753211 123567778
Q ss_pred HHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC-hhhHH-----HHHHHHHccCCHHHHHHHHHHHHHcCCCC---CH
Q 042598 275 LDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN-VETFN-----VLISNLCKIRRSEDAIKLFYRMGEWGCHP---NE 345 (503)
Q Consensus 275 i~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~ 345 (503)
...+...|+ +++|...+++.......++ ...|. ..+..+...|++++|..++++.......+ ..
T Consensus 181 a~~~~~~g~-------~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 181 IQCSLARGD-------LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHTC-------HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHcCC-------HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 888888888 8899999988764311111 11222 23344779999999999999886543221 12
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYAIGK-KDYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
..+..+...+...|++++|...++...+. |..++. ..+..+...+...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35667788899999999999999987653 222222 3566677888899999999999998764
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=7.3e-10 Score=101.75 Aligned_cols=231 Identities=14% Similarity=0.031 Sum_probs=103.8
Q ss_pred HhCCChhHHHHHHHHHhc-------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CcCHHHHHHHHHHH
Q 042598 210 CENGYASYAEKLVKDTAN-------EI-FPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGF---ELGTVAYNCILDCV 278 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~-------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~ 278 (503)
...|++++|+.+|++... .. .....++..+...|...|++++|...+++..+..- .++... ...++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~ 88 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA---VAATL 88 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH---HHHHH
Confidence 345666666666554321 11 12345566666666677777777777666654210 011111 11111
Q ss_pred HhcCCCCCCCCcHHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-C
Q 042598 279 SKLCRKKDPFRLDSEAEKVLLDMEYN------G-VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW------GCHP-N 344 (503)
Q Consensus 279 ~~~g~~~~~~~~~~~a~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~ 344 (503)
...|......+.+++|.+.|.+.... . .+.....|..+...|...|++++|+.+|++..+. +..| .
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 22222111123355555555554432 0 0122344555555555555555555555554432 1111 1
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHHccCC------HHHHHHHHHHHHhCC
Q 042598 345 ETTFLVLIKSLYQAARVGEGDEMIDRMKSA-------GYAIGK-KDYYEFLTRLCGIER------IEQAMSVFEKMKTDG 410 (503)
Q Consensus 345 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~-~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g 410 (503)
..++..+...+...|++++|.++++++.+. ...+.. ..+..+...+...+. +..+...++.... .
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 247 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-D 247 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-C
Confidence 234445555555555555555555555432 011111 112222222221111 1111111111110 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 411 HNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 411 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.+....++..+...|...|++++|..++++..+.
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1123356788889999999999999999987653
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=2.4e-08 Score=96.59 Aligned_cols=230 Identities=10% Similarity=0.015 Sum_probs=171.1
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCCC----HHhHHHHHHHHHhCCChhHHHHHHHHHhc---CCC----CCHHHHH
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRD----KDSLRLVVEKLCENGYASYAEKLVKDTAN---EIF----PDDKICD 237 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~----p~~~~~~ 237 (503)
....+...|++++|+..|++..+...-.+| ..+|..+-..|...|++++|...+++... ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999998753111233 46788899999999999999999988633 111 1245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh-----CCCC
Q 042598 238 LLIKGWCVDGKLDEAKRLAREMYRG----GFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY-----NGVP 307 (503)
Q Consensus 238 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~-----~g~~ 307 (503)
.+...|...|++++|...|++..+. +..+ ...++..+..+|...|+ .++|.+.|++..+ ...+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-------YEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhccch
Confidence 8999999999999999999988753 2111 13478888899999998 7888888877665 2213
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHcCCCCC-
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEW----GCHPNETTFLVLIKSLYQAAR---VGEGDEMIDRMKSAGYAIG- 379 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~~~- 379 (503)
....++..+...|.+.|++++|...|++..+. +-......+..+...+...|+ +++|..+++.. +..++
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 45677889999999999999999999987553 212223345667777888888 66676666654 33333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
...+..+...|...|++++|.+.|++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35677788999999999999999998763
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=1.1e-09 Score=100.61 Aligned_cols=232 Identities=12% Similarity=-0.004 Sum_probs=152.1
Q ss_pred HHHcCChhHHHHHHHHhHHhc----C--CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcC--------CCCCHHHHHH
Q 042598 173 LVRAGRPTQVLGFFERMERDY----G--FKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE--------IFPDDKICDL 238 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~~~~----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~p~~~~~~~ 238 (503)
....|++++|+..|++..+.. + ......++..+...|...|++++|+..+++.... ......++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 356799999999999887631 1 1224577889999999999999999999987431 1234568889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC------C-CC
Q 042598 239 LIKGWCVDGKLDEAKRLAREMYRGG---FEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN------G-VP 307 (503)
Q Consensus 239 li~~~~~~g~~~~a~~~~~~m~~~g---~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~------g-~~ 307 (503)
+...|...|++++|.+.|.+..+.. ..+ +.... .++...|......+.+++|...+++..+. + .+
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA----KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999987631 112 23322 23333333333336689999999988764 1 12
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH---c-C-
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEW-------GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS---A-G- 375 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~---~-g- 375 (503)
....++..+...|...|++++|..+|++..+. ...+....+...+..+...+........+..+.. . +
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 34567888999999999999999999998653 1233333333333333333222222222222221 1 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 376 -YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 376 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
......++..+...|...|++++|.++|++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112345788899999999999999999998774
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.00 E-value=1.1e-07 Score=91.76 Aligned_cols=231 Identities=10% Similarity=-0.013 Sum_probs=167.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHhcCCCCC----HHhHHHHHHHHHhCCChhHHHHHHHHHhc---CCC----CCHHHH
Q 042598 168 SCIDRLVRAGRPTQVLGFFERMERDYGFKRD----KDSLRLVVEKLCENGYASYAEKLVKDTAN---EIF----PDDKIC 236 (503)
Q Consensus 168 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~----p~~~~~ 236 (503)
.....+...|++++|+..|++..+...-.+| ..++..+-..|...|+++.|...+++... ... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3444567899999999999998753221233 45788888999999999999999988632 111 124678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh----CCCC
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYRG----GFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY----NGVP 307 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~----~g~~ 307 (503)
+.+...|...|++++|.+.|++..+. |..+ ...++..+..+|...|+ .++|.+.|++..+ .+.+
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-------~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-------DQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhCCh
Confidence 88999999999999999999987752 2111 24577888889999988 7788877777654 1223
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHcCCCCC-
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG----CHPNETTFLVLIKSLYQAAR---VGEGDEMIDRMKSAGYAIG- 379 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~~~- 379 (503)
....++..+...|.+.|++++|...+++..+.. .......+..+-..+...++ +++|..+++. .+..++
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHH
Confidence 346788889999999999999999999987642 11123445555556666777 6667666665 333332
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
...+..+...|...|+.++|.+.|++..+
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34667788899999999999999998763
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=4.3e-08 Score=78.43 Aligned_cols=131 Identities=13% Similarity=0.167 Sum_probs=113.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC 391 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 391 (503)
.|..+...|...|++++|..+|+++.+.+ ..+...+..+...+...|++++|..+++.+.+.+ ..+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 57788889999999999999999998764 3367788889999999999999999999998854 345678888999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
..|++++|.++++++.+.. +.+...+..+...|...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999998653 4467889999999999999999999999988654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=2.7e-08 Score=103.41 Aligned_cols=163 Identities=18% Similarity=0.076 Sum_probs=79.3
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 042598 200 DSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279 (503)
Q Consensus 200 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 279 (503)
..|+.|-..|.+.|++++|++.|++..+-.+-+..+|+.+..+|.+.|++++|++.|++..+.. .-+...|..+-.+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444444444444444444444444433222234444444445555555555555555444421 112344445555555
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHh
Q 042598 280 KLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQA 358 (503)
Q Consensus 280 ~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~ 358 (503)
+.|+ +++|.+.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+.. | +...|..+..++...
T Consensus 89 ~~g~-------~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 89 EMQD-------VQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT
T ss_pred HcCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhc
Confidence 5544 445555554444322 1234455555555666666666666666555532 2 345555556666666
Q ss_pred CCHhHHHHHHHHHHH
Q 042598 359 ARVGEGDEMIDRMKS 373 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~ 373 (503)
|++++|.+.++++.+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 666666555555443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=2.8e-08 Score=103.32 Aligned_cols=165 Identities=8% Similarity=-0.100 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKR-DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
+...|+.|-..|.+.|++++|++.|++..+. .| +...|+.+-.+|.+.|++++|++.|++..+--+-+...|+.+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3567777777888888888888888777654 33 4667777778888888888888888776553334567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 320 (503)
.+|...|++++|++.|++..+.. .-+...|+.+..+|.+.|+ +++|.+.|++..+.. +-+...|..+...|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~-------~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN-------IPEAIASYRTALKLK-PDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC-CCChHHHhhhhhHH
Confidence 88888888888888888777642 2246677777788888777 778888887766543 23566777788888
Q ss_pred HccCCHHHHHHHHHHHHH
Q 042598 321 CKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~ 338 (503)
...|++++|.+.|++..+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 888888888777776643
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.94 E-value=4.5e-08 Score=90.80 Aligned_cols=193 Identities=13% Similarity=0.055 Sum_probs=126.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----CCCC-Chh
Q 042598 242 GWCVDGKLDEAKRLAREMYRG----GFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----GVPR-NVE 311 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~ 311 (503)
.|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|+ +++|...|+...+. |-.. -..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------SVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666666666655432 21111 3466666677777666 55555555444321 1100 134
Q ss_pred hHHHHHHHHHcc-CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH-----
Q 042598 312 TFNVLISNLCKI-RRSEDAIKLFYRMGEW----GCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK----- 380 (503)
Q Consensus 312 ~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----- 380 (503)
+|+.+...|... |++++|+..|++..+. +.... ..++..+...+...|++++|...|+...+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788888899996 9999999999987653 11111 356888899999999999999999999985433221
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 042598 381 -KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE------TYDLLMTKWC--AHNRVDKANALFDEAVR 443 (503)
Q Consensus 381 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~m~~ 443 (503)
..|..+..++...|++++|...|++..+. .|+.. .+..++.+|. ..+++++|+..|+++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 15677788899999999999999988753 34322 3445666664 45678888888766543
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.92 E-value=1.8e-07 Score=82.96 Aligned_cols=195 Identities=7% Similarity=-0.103 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
.|+..+......+...|++++|++.|++..+. .-.++...+..+..++...|++++|+..|++.....+.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 46788888899999999999999999998875 22267788888999999999999999999998765555678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC---h
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELGT-------VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN---V 310 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~---~ 310 (503)
..|...|++++|++.+++..+.. +.+. .+|..+-..+.+.|+ +++|.+.|+...+.. |+ .
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~--p~~~~~ 153 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGN-------IEKAEENYKHATDVT--SKKWKT 153 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTTSS--CHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhcc-------HHHHHHHHHHHHhcC--CCcccH
Confidence 99999999999999999988752 2234 346666677777777 899999999988753 43 5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
..|..+...|...| ..+++++...+ ..+...|..... ...+.+++|...+++..+.
T Consensus 154 ~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 154 DALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 66777777775443 44555655543 223455544443 3456689999999999884
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.90 E-value=1.6e-07 Score=83.43 Aligned_cols=155 Identities=8% Similarity=-0.114 Sum_probs=125.5
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 042598 266 LGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345 (503)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (503)
.|...+......+.+.|+ +++|.+.|+...+...+++...+..+..+|...|++++|+..|++..+.... +.
T Consensus 5 ~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 76 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKN-------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LA 76 (228)
T ss_dssp CCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HH
T ss_pred cCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hH
Confidence 355777788888888888 8999999999887664467777777899999999999999999999875322 45
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---H
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK-------KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD---S 415 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~ 415 (503)
..|..+...+...|++++|.+.+++..+... -+. ..|..+-..+...|++++|.+.|++..+. .|+ .
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 153 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKT 153 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccH
Confidence 7788899999999999999999999988532 233 45777788888999999999999999875 565 5
Q ss_pred HHHHHHHHHHHhcCCh
Q 042598 416 ETYDLLMTKWCAHNRV 431 (503)
Q Consensus 416 ~~~~~li~~~~~~g~~ 431 (503)
..|..+...|...|+.
T Consensus 154 ~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 154 DALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777788888777766
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.86 E-value=9.9e-06 Score=83.30 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=123.3
Q ss_pred HHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---------CCCC------------HHHH
Q 042598 291 DSEAE-KVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWG---------CHPN------------ETTF 348 (503)
Q Consensus 291 ~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~------------~~t~ 348 (503)
.++|. ++|++... .++.+...|-..+...-+.|++++|.++|+++.+.. -.|+ ...|
T Consensus 359 ~~~a~r~il~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 44665 77777664 234566677788888888999999999999887631 0132 2357
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042598 349 LVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI-ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427 (503)
Q Consensus 349 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (503)
...+....+.|+.+.|..+|..+.+.-.......|...+..-.+. ++.+.|.++|+...+. ++-+...|...+.-...
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777777788899999999999998851112233444433333344 4589999999988865 45566777788888888
Q ss_pred cCChHHHHHHHHHHHHCCCcc--CcccccchHHHhcCchhhhcccccccHHHHHHHH
Q 042598 428 HNRVDKANALFDEAVRNGVEV--KPKEYRVDPRYLKKPIAVKKGKKRETLPEKMARK 482 (503)
Q Consensus 428 ~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (503)
.|+.+.|..+|++.......+ ....+...+.+-. ..|..+.+..+.+++.+.
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~---~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES---KVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH---HTCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh
Confidence 899999999999988765321 1123333333322 234445555666665544
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=8.1e-07 Score=81.35 Aligned_cols=179 Identities=11% Similarity=-0.005 Sum_probs=97.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHH
Q 042598 218 AEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGF-ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEK 296 (503)
Q Consensus 218 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~ 296 (503)
|+..|++....-.++..++..+..++...|++++|++++.+....|- .-+...+..++..+.+.|+ .+.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r-------~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN-------VSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC-------HHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC-------HHHHHH
Confidence 55556655443244555555666666677777777777776655432 1244556666666666666 667777
Q ss_pred HHHHHHhCCCCC-----ChhhHHHHHHHH--Hc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHH
Q 042598 297 VLLDMEYNGVPR-----NVETFNVLISNL--CK--IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEM 367 (503)
Q Consensus 297 ~~~~m~~~g~~~-----~~~~~~~li~~~--~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~ 367 (503)
.++.|.+. .| +..+...+..++ .. .+++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 77666553 23 234444444442 22 23677777777776543 24423333344466667777777777
Q ss_pred HHHHHHcC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 368 IDRMKSAG---------YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 368 ~~~m~~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
++.+.+.- -.-|..+...+|......|+ +|.++++++.+.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 76554420 02234444344444444454 666666666654
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=1.5e-07 Score=75.16 Aligned_cols=129 Identities=10% Similarity=-0.000 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWC 244 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~ 244 (503)
.|..+...|...|++++|+++|+++.+. .+.+...+..+...+...|++++|..+++++....+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4556666677777777777777776653 12355666667777777777777777777765433445566677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 245 VDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
..|++++|.+.++++.+.. ..+..++..+...+.+.|+ .++|.+.+.++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD-------YDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-------HHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHcc-------HHHHHHHHHHHHc
Confidence 7777777777777776543 2345566667777777766 6677777766654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.81 E-value=3.4e-07 Score=84.79 Aligned_cols=206 Identities=8% Similarity=-0.092 Sum_probs=143.7
Q ss_pred ChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-----CCCCC-HHHHHHHHHHHHhcCCHHH
Q 042598 178 RPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-----EIFPD-DKICDLLIKGWCVDGKLDE 251 (503)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~ 251 (503)
++++|...|++. ...|...|++++|...|++... +..++ ..+|+.+...|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 367777777665 2356778888888888876532 11111 4678888888989999999
Q ss_pred HHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhc-CCCCCCCCcHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHH
Q 042598 252 AKRLAREMYRG----GFEL-GTVAYNCILDCVSKL-CRKKDPFRLDSEAEKVLLDMEYN----GVPRN-VETFNVLISNL 320 (503)
Q Consensus 252 a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-g~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~ 320 (503)
|+..|++..+. |-.. -..+++.+...|... |+ +++|...|++..+. +-... ..+|+.+...|
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~-------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD-------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 99888877642 2111 135788888889885 88 77888888776542 11011 35688899999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH------HHHHHHHH
Q 042598 321 CKIRRSEDAIKLFYRMGEWGCHPNE------TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK------KDYYEFLT 388 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~ 388 (503)
.+.|++++|+..|++..+....... .+|..+..++...|++++|...|++..+. .|+. ..+..++.
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~ 246 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLID 246 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHH
Confidence 9999999999999999875432221 15677788899999999999999998763 3321 23445566
Q ss_pred HHH--ccCCHHHHHHHHHHHHh
Q 042598 389 RLC--GIERIEQAMSVFEKMKT 408 (503)
Q Consensus 389 ~~~--~~g~~~~A~~~~~~m~~ 408 (503)
.|. ..+++++|++.|+.+..
T Consensus 247 ~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 247 AVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHcCCHHHHHHHHHHhccCCc
Confidence 665 46789999998877653
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.79 E-value=1.8e-06 Score=79.12 Aligned_cols=242 Identities=12% Similarity=0.020 Sum_probs=159.4
Q ss_pred HHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042598 173 LVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEA 252 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 252 (503)
..-.|.+..++.-...+.. .. +...-.-+.++|...|+.+.. ..-.|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~-~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VT-DNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CC-CHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cc-hHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 3445777776663322221 11 223333445677777766531 11123333333333333 322 6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCCHHHHHH
Q 042598 253 KRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV-PRNVETFNVLISNLCKIRRSEDAIK 331 (503)
Q Consensus 253 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~ 331 (503)
+..+++....+ .++..++..+..++...|+ +++|++++.+....|. .-+...+-.++..|.+.|+.+.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~-------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGD-------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC-------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 77788777665 4556666678888888888 8999999998866543 2356677788999999999999999
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHH--HhC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 042598 332 LFYRMGEWGCHP-----NETTFLVLIKSLY--QAA--RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSV 402 (503)
Q Consensus 332 l~~~m~~~g~~p-----~~~t~~~li~~~~--~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (503)
.+++|.+. .| +..+...+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 99999874 45 3566677776743 334 899999999998763 35533444455588899999999999
Q ss_pred HHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 403 FEKMKTD-----G----HNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 403 ~~~m~~~-----g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
++.+.+. . -+-|..+...+|......|+ +|.++++++.+..
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 9876642 0 03366666566665666676 8889999998865
No 92
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=1.5e-07 Score=87.85 Aligned_cols=229 Identities=10% Similarity=0.027 Sum_probs=146.4
Q ss_pred cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042598 176 AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRL 255 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 255 (503)
.|++++|.+++++..+.. +. . + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~---~~--~---~---~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL---KT--S---F---MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH---CC--C---S---SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc---cc--c---c---cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 466778888887776531 11 0 0 11146677777666653 4456677888888887
Q ss_pred HHHHHHC----CCCc-CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCHHHH
Q 042598 256 AREMYRG----GFEL-GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP-RNVETFNVLISNLCKIRRSEDA 329 (503)
Q Consensus 256 ~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A 329 (503)
|.+..+. |-.. -..+|+.+...|.+.|+...+...+++|.+++.+. |-. .-..+|+.+...|.. |++++|
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 7776542 2111 13467777788888888555544444555444322 111 124577788888888 999999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHH
Q 042598 330 IKLFYRMGEW----GCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYAIG-KKDYYEFLTRLCGIERIEQA 399 (503)
Q Consensus 330 ~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 399 (503)
+..|++..+. |... ...++..+...+...|++++|.+.|++..+. +..++ ...+..+...+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999887553 1111 1467888889999999999999999988763 21111 23566677777788999999
Q ss_pred HHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 042598 400 MSVFEKMKTDGHNPDS------ETYDLLMTKWCAHNRVDKANAL 437 (503)
Q Consensus 400 ~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~ 437 (503)
...|++.. . .|+. .....++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999887 3 3321 2344555555 56777666553
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=1.1e-06 Score=79.81 Aligned_cols=101 Identities=9% Similarity=-0.130 Sum_probs=68.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC-HHHHH
Q 042598 198 DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPD---DKICDLLIKGWCVDGKLDEAKRLAREMYRGGF-ELG-TVAYN 272 (503)
Q Consensus 198 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~-~~~~~ 272 (503)
+...+..+...+.+.|++++|+..|+++....+.+ ...+..+..+|.+.|++++|...|++..+..- .+. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44555566666777777777777777775533333 56677777778888888888888888776421 112 34556
Q ss_pred HHHHHHHh--------cCCCCCCCCcHHHHHHHHHHHHhCC
Q 042598 273 CILDCVSK--------LCRKKDPFRLDSEAEKVLLDMEYNG 305 (503)
Q Consensus 273 ~li~~~~~--------~g~~~~~~~~~~~a~~~~~~m~~~g 305 (503)
.+..++.+ .|+ .++|...|+...+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~-------~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTD-------TRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHH-------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccccccchh-------HHHHHHHHHHHHHHC
Confidence 66666666 666 899999999987643
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=8.3e-07 Score=77.58 Aligned_cols=170 Identities=10% Similarity=-0.013 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHH----------------HHHHHHhCCChhHHHHHHHHHhc
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRL----------------VVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
.+-.....+...|++++|+..|++..+. .|+ ...|.. +-.+|.+.|++++|+..|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455667888888888888887764 343 334444 66677777777777777777655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC
Q 042598 228 EIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP 307 (503)
Q Consensus 228 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~ 307 (503)
..+-+...+..+...+...|++++|...|++..+.. +-+..++..+..+|...|+. ....+...+..... ..
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~-----~~~~~~~~~~~~~~--~~ 154 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ-----EKKKLETDYKKLSS--PT 154 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH-----HHHHHHHHHC---C--CC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHhC--CC
Confidence 444566777777777777777777777777776642 22455666666666554431 12334444443332 11
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT 347 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (503)
|....+...-.++...|++++|+..|++..+ ..|+...
T Consensus 155 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred chhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 2222333334445556677777777776665 3455443
No 95
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.70 E-value=3.1e-05 Score=79.64 Aligned_cols=314 Identities=6% Similarity=-0.036 Sum_probs=163.9
Q ss_pred CCCHHHHHHHHHHHhcCCChHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHhHHhcCCCCCHHhH
Q 042598 128 SHTDETLSFFTDYFGRRKDFKAIHDFLVDN--KEVLGPKTLASCIDRLVRAGR---PTQVLGFFERMERDYGFKRDKDSL 202 (503)
Q Consensus 128 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~~~~~~~~~~~ 202 (503)
+-|..+|..++..+.+.+.++.+..+++++ ..+.+...|...+..-.+.|. ++.+.++|+.........|++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 357778888888887777888888877766 335567778777777777777 888888888877531113777777
Q ss_pred HHHHHHHHhCCCh--------hHHHHHHHHHhc--CC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 042598 203 RLVVEKLCENGYA--------SYAEKLVKDTAN--EI-FP-DDKICDLLIKGWC---------VDGKLDEAKRLAREMYR 261 (503)
Q Consensus 203 ~~ll~~~~~~g~~--------~~a~~~~~~~~~--~~-~p-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~ 261 (503)
...+.-..+.++. +...++|+.... |. .+ +...|...+.-.. ..++++.+..+|+....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777655554443 223456665433 33 33 3466766665433 23446677778877774
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCCCCCCC-------cHHHHHHHHHHHHh--CCCC----CC-------------------
Q 042598 262 GGFELGTVAYNCILDCVSKLCRKKDPFR-------LDSEAEKVLLDMEY--NGVP----RN------------------- 309 (503)
Q Consensus 262 ~g~~~~~~~~~~li~~~~~~g~~~~~~~-------~~~~a~~~~~~m~~--~g~~----~~------------------- 309 (503)
.....-..+|......--..+. ..+.. .++.|...+.++.. .++. ..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 2211112233211111000000 00000 02223333333221 1110 00
Q ss_pred hhhHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHH-HHHHHHHHcCCCCCHH
Q 042598 310 VETFNVLISNLCKIR-------RSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGD-EMIDRMKSAGYAIGKK 381 (503)
Q Consensus 310 ~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~ 381 (503)
...|...|.---..+ ..+.+..+|++.... +.-+...|...+.-+...|+.++|. ++++..... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 123444443322222 122344556555543 2224455555555556666666664 666666552 233444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKTDG---------HNPD------------SETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
.+...+...-+.|+++.|.++|+.+.+.. -.|+ ..+|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55556666666666777776666665420 0121 23466666666666666667777666
Q ss_pred HHHC
Q 042598 441 AVRN 444 (503)
Q Consensus 441 m~~~ 444 (503)
..+.
T Consensus 460 A~~~ 463 (679)
T 4e6h_A 460 CRRL 463 (679)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6654
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.66 E-value=1.1e-06 Score=79.82 Aligned_cols=101 Identities=13% Similarity=-0.038 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC-
Q 042598 231 PDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG---TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV- 306 (503)
Q Consensus 231 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~- 306 (503)
.+...+..+...+.+.|++++|...|+++.+.. +-+ ...+..+..+|.+.|+ +++|...|+.......
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~-------~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKE-------YLLAASEYERFIQIYQI 84 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHCCC
Confidence 456777778888999999999999999998753 112 5678888889999998 8999999999887532
Q ss_pred -CCChhhHHHHHHHHHc--------cCCHHHHHHHHHHHHHc
Q 042598 307 -PRNVETFNVLISNLCK--------IRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 307 -~~~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~ 339 (503)
+.....+..+..+|.. .|++++|+..|++..+.
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 1224566777788888 99999999999999875
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.61 E-value=2e-06 Score=75.13 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=74.8
Q ss_pred HHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 274 ILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIK 353 (503)
Q Consensus 274 li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 353 (503)
+..+|.+.|+ +++|...|+...+.. +.+...|..+...|...|++++|+..|++..+.. +-+..++..+..
T Consensus 60 lg~~~~~~g~-------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 130 (208)
T 3urz_A 60 LALAYKKNRN-------YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGN 130 (208)
T ss_dssp HHHHHHHTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHCCC-------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5566666666 667777766665543 2355666667777777777777777777766643 124556666666
Q ss_pred HHHHhCC--HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042598 354 SLYQAAR--VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLM 422 (503)
Q Consensus 354 ~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 422 (503)
.+...|. .+.+...++.... ..|....+...-.++...|++++|...|++..+. .|+......+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 5554443 2334444444321 1122222233334445567777777777777653 56665554443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=6.4e-06 Score=72.13 Aligned_cols=177 Identities=13% Similarity=0.034 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC----CH
Q 042598 251 EAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR----RS 326 (503)
Q Consensus 251 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~ 326 (503)
+|++.|++..+.| +...+..+-..|...++ .++|.+.|+...+.| +...+..+-..|.. + +.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~-------~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGD-------YQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCH
Confidence 4667777777754 56777777778877777 889999999888754 56677777777777 6 89
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----cCCHH
Q 042598 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ----AARVGEGDEMIDRMKSAGYA-IGKKDYYEFLTRLCG----IERIE 397 (503)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~ 397 (503)
++|+++|++..+.| +...+..+-..|.. .+++++|.+.|++..+.|.. -+...+..|-..|.. .++.+
T Consensus 70 ~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 70 PQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999987765 55677777777766 78899999999988875531 125677778788877 77899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCCC
Q 042598 398 QAMSVFEKMKTDGHNPDSETYDLLMTKWCAH-N-----RVDKANALFDEAVRNGV 446 (503)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 446 (503)
+|.++|++..+. ..+...+..|-..|... | +.++|..+|++..+.|.
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999988875 24555677777777653 3 88999999999888874
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=7.6e-06 Score=72.36 Aligned_cols=166 Identities=11% Similarity=-0.040 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCH
Q 042598 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP-R-NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH-PNE 345 (503)
Q Consensus 269 ~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~ 345 (503)
..+-.+...+.+.|+ +++|...|+.+...... + ....+..+..+|.+.|++++|+..|++..+.... +..
T Consensus 5 ~~~~~~a~~~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 5 NEIYATAQQKLQDGN-------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 344455566777788 89999999998874321 1 1356778889999999999999999999875322 111
Q ss_pred -HHHHHHHHHHHH------------------hCCHhHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHH
Q 042598 346 -TTFLVLIKSLYQ------------------AARVGEGDEMIDRMKSAGYAIGK-KDY-----------------YEFLT 388 (503)
Q Consensus 346 -~t~~~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~~~~-~~~-----------------~~li~ 388 (503)
..+..+..++.. .|+.++|...|+.+++. .|+. ..+ ..+..
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444443 56899999999999884 2332 111 24556
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 389 RLCGIERIEQAMSVFEKMKTDGHNPDS----ETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
.|.+.|++++|...|+++.+. .|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 788899999999999999875 4543 468889999999999999999999998876
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.56 E-value=1.3e-06 Score=91.07 Aligned_cols=173 Identities=6% Similarity=-0.097 Sum_probs=121.6
Q ss_pred HhCCChhHHHHHHHHHh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 042598 210 CENGYASYAEKLVKDTA--------NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKL 281 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~--------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 281 (503)
...|++++|++.+++.. ...+.+...+..+...+...|++++|++.|++..+.. .-+...|..+-.+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888888776 3334556777788888888888888888888877642 23566777777778888
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH
Q 042598 282 CRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARV 361 (503)
Q Consensus 282 g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 361 (503)
|+ +++|.+.|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+.+- -+...|..+..++.+.|++
T Consensus 481 g~-------~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 481 GD-------YDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDR 550 (681)
T ss_dssp TC-------HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred CC-------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCH
Confidence 77 778888888776643 2356677778888888888888 888888776532 2556777788888888888
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 042598 362 GEGDEMIDRMKSAGYAIG-KKDYYEFLTRLCGIER 395 (503)
Q Consensus 362 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 395 (503)
++|.+.|+++.+ +.|+ ...+..+..++...|+
T Consensus 551 ~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 888888887765 3444 3455556666655443
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=4e-06 Score=73.16 Aligned_cols=129 Identities=9% Similarity=0.007 Sum_probs=103.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC 391 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 391 (503)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|.+.++...+.. ..+...+..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4555667778889999999998876 35678888888889999999999999999888753 345678888888899
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDS----------------ETYDLLMTKWCAHNRVDKANALFDEAVRNGV 446 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 446 (503)
..|++++|.+.|++..+.. +.+. ..|..+..+|...|++++|.+.|++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999888642 2222 6788888889999999999999999887653
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=5.6e-05 Score=69.70 Aligned_cols=220 Identities=8% Similarity=-0.058 Sum_probs=116.5
Q ss_pred ChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCC--ChhHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---C
Q 042598 178 RPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENG--YASYAEKLVKDTANEIFPDDKICDLLIKGW----CVD---G 247 (503)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g 247 (503)
..++|+++++.+... .|+ ...|+.--..+...| ++++++++++.+....+.+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 345777777777654 343 455666666666666 777777777776554444555555533333 333 5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC--
Q 042598 248 KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR-- 325 (503)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-- 325 (503)
++++++++++.+.+.. +-+-.+|+.-.-.+.+.|... ..++.+.++.+.+... .|...|+--...+.+.|.
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~-----~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN-----DAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGC
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC-----hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 6667777777666542 334455555444444444411 1255666666655432 455556555444444444
Q ss_pred ----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHH
Q 042598 326 ----SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGE-GDEMIDRMKSAG--YAIGKKDYYEFLTRLCGIERIEQ 398 (503)
Q Consensus 326 ----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~ 398 (503)
++++++.++++...... |...|+-.-..+.+.|+... ...+...+.+.+ -..+......+.+.|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 56666666666554322 55555555555555554322 333443333221 12244455555555555555555
Q ss_pred HHHHHHHHHh
Q 042598 399 AMSVFEKMKT 408 (503)
Q Consensus 399 A~~~~~~m~~ 408 (503)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555553
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=1.7e-06 Score=73.26 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 294 AEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 294 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
|...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 344444444322 1245566666666666677777777776666543222 23456666666666677766666666554
Q ss_pred H
Q 042598 373 S 373 (503)
Q Consensus 373 ~ 373 (503)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.54 E-value=1.1e-06 Score=91.60 Aligned_cols=173 Identities=11% Similarity=0.009 Sum_probs=135.1
Q ss_pred HHcCChhHHHHHHHHhH--------HhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 042598 174 VRAGRPTQVLGFFERME--------RDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV 245 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~--------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 245 (503)
...|++++|++.|++.. + ..+.+...|..+..+|.+.|++++|++.|++..+..+.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67899999999999987 3 2234567888899999999999999999999876555678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 042598 246 DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR 325 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 325 (503)
.|++++|++.|++..+.. .-+...+..+-.+|.+.|+..+ .. .|++..+.+ +.+...|..+..+|.+.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~-------~~~~al~~~-P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HK-------FYQTVWSTN-DGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TC-------HHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HH-------HHHHHHHhC-CchHHHHHHHHHHHHHcCC
Confidence 999999999999998753 2356788899999999999654 44 444443322 3467789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCC
Q 042598 326 SEDAIKLFYRMGEWGCHPN-ETTFLVLIKSLYQAAR 360 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~ 360 (503)
+++|++.|++..+. .|+ ...+..+..++...++
T Consensus 550 ~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 550 RVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999999988764 455 4566666666655554
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.54 E-value=1.4e-06 Score=81.36 Aligned_cols=199 Identities=10% Similarity=-0.011 Sum_probs=140.2
Q ss_pred CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcH
Q 042598 212 NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLD 291 (503)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~ 291 (503)
.|++++|.+++++..+..+.. + +...+++++|...|.+. ...|...|+ +
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~-------~ 52 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQ-------L 52 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTC-------H
T ss_pred cchHHHHHHHHHHHHHHcccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCC-------H
Confidence 466778888888765422211 0 11157888888888765 345666777 6
Q ss_pred HHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCH
Q 042598 292 SEAEKVLLDMEYN----GVP-RNVETFNVLISNLCKIRRSEDAIKLFYRMGEW----GCHP-NETTFLVLIKSLYQAARV 361 (503)
Q Consensus 292 ~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~ 361 (503)
++|...|....+. |-. .-..+|+.+...|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++
T Consensus 53 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~ 131 (307)
T 2ifu_A 53 EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL 131 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH
Confidence 7777777665431 111 11457888899999999999999999986543 2111 13577788888888 999
Q ss_pred hHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCh
Q 042598 362 GEGDEMIDRMKSAGYAI-----GKKDYYEFLTRLCGIERIEQAMSVFEKMKTD----GHNPD-SETYDLLMTKWCAHNRV 431 (503)
Q Consensus 362 ~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~ 431 (503)
++|.+.|++..+..-.. ...+++.+...|.+.|++++|++.|++..+. +..++ ...+..+..++...|++
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 99999999887631111 1457888899999999999999999988752 21111 23667777788888999
Q ss_pred HHHHHHHHHHH
Q 042598 432 DKANALFDEAV 442 (503)
Q Consensus 432 ~~A~~~~~~m~ 442 (503)
++|...|++..
T Consensus 212 ~~A~~~~~~al 222 (307)
T 2ifu_A 212 VAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999988
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=1.4e-06 Score=73.83 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 042598 166 LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG-WC 244 (503)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~-~~ 244 (503)
+..+...+.+.|++++|+..|++..+. -+.+...+..+...+.+.|++++|+..|+...... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-CChHHHHHHHHHHHH
Confidence 344445566666666666666665432 12244556666666666666666666666553322 233222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcc
Q 042598 245 VDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPR-NVETFNVLISNLCKI 323 (503)
Q Consensus 245 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 323 (503)
..+...+|...+++..+.. +-+...+..+..++...|+ +++|...|++..+....+ +...+..+...|...
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGR-------DEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc-------HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 2122233455555555431 1234555556666666665 566666666665543221 234556666666666
Q ss_pred CCHHHHHHHHHHH
Q 042598 324 RRSEDAIKLFYRM 336 (503)
Q Consensus 324 g~~~~A~~l~~~m 336 (503)
|+.++|...|++.
T Consensus 158 g~~~~A~~~y~~a 170 (176)
T 2r5s_A 158 GQGNAIASKYRRQ 170 (176)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 6666666666554
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=1.8e-05 Score=73.03 Aligned_cols=162 Identities=9% Similarity=-0.067 Sum_probs=116.3
Q ss_pred HHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----
Q 042598 275 LDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV-PRNV----ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH-PN---- 344 (503)
Q Consensus 275 i~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---- 344 (503)
+..+...|+ +++|.+.++....... .++. ..+..+...|...|++++|+..|++..+.... ++
T Consensus 82 i~~~~~~~~-------y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 82 VIMLCKQKR-------YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHTTC-------HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHhh-------HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 455666666 6777777777665321 1221 23344666777788999999999998874222 22
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC
Q 042598 345 ETTFLVLIKSLYQAARVGEGDEMIDRMKSA-----GYAIG-KKDYYEFLTRLCGIERIEQAMSVFEKMKTD----GHNPD 414 (503)
Q Consensus 345 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 414 (503)
..+|+.+...|...|++++|...|+++.+. +..+. ..++..+...|.+.|++++|.+.+++..+. +..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 236888999999999999999999998852 11122 247788889999999999999999876632 22222
Q ss_pred -HHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 042598 415 -SETYDLLMTKWCAHNR-VDKANALFDEAVR 443 (503)
Q Consensus 415 -~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 443 (503)
..+|..+..+|.+.|+ +++|.+.+++...
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5788889999999995 6999999988765
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=1e-05 Score=71.52 Aligned_cols=184 Identities=8% Similarity=0.000 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCH---HHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDD---KICDL 238 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~---~~~~~ 238 (503)
...+..+...+.+.|++++|+..|+++.+.+...+. ...+..+..+|.+.|++++|+..|+++.+..+-+. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555556667777777777777777654211111 24566666777777777777777777644221111 13333
Q ss_pred HHHHHH------------------hcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 042598 239 LIKGWC------------------VDGKLDEAKRLAREMYRGGFELGTV-AYNCILDCVSKLCRKKDPFRLDSEAEKVLL 299 (503)
Q Consensus 239 li~~~~------------------~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~~~~~~~~a~~~~~ 299 (503)
+..++. ..|++++|...|+++.+. .|+.. .+.+.. +. ..+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l-------------~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL-------------VFLKD 144 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH-------------HHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH-------------HHHHH
Confidence 333333 357899999999999875 34422 222111 10 11111
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC
Q 042598 300 DMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN----ETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375 (503)
Q Consensus 300 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 375 (503)
.+. .....+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 145 ~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 111 122345677889999999999999998753 33 2567888899999999999999999888754
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.52 E-value=4.7e-06 Score=76.83 Aligned_cols=163 Identities=11% Similarity=0.037 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHH-HH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDL-LI 240 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~-li 240 (503)
+...+..+...+.+.|++++|++.|++..+. -+-+...+..+...+.+.|++++|...+++.... .|+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHH
Confidence 3344455555556666666666666665543 1223445555555566666666666665554321 123222111 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCC-CChhhHHHHHHH
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVP-RNVETFNVLISN 319 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 319 (503)
..+...++.++|...+++..... +.+...+..+...+...|+ .++|...|.+..+.... .+...+..+...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~-------~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR-------NEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc-------HHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 12333444444444444444321 1223444444444444444 44444444444432211 113344444444
Q ss_pred HHccCCHHHHHHHHHH
Q 042598 320 LCKIRRSEDAIKLFYR 335 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~ 335 (503)
|...|+.++|...|++
T Consensus 265 ~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 265 LAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHCTTCHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHH
Confidence 4444444444444443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.52 E-value=3.3e-06 Score=86.09 Aligned_cols=154 Identities=10% Similarity=-0.065 Sum_probs=111.4
Q ss_pred cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042598 176 AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRL 255 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 255 (503)
.|++++|++.|++..+. .+.+...|..+...|.+.|++++|.+.|++..+..+.+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999887753 2335788888889999999999999999988775556778888999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCHHHHHHH
Q 042598 256 AREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI---RRSEDAIKL 332 (503)
Q Consensus 256 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~l 332 (503)
|++..+.. ..+...+..+..+|.+.|+ .++|.+.|++..+.. +.+...+..+...|... |+.++|.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQ-------AEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99988753 3356788888888888888 889999998887654 24567788888888888 999999999
Q ss_pred HHHHHHcC
Q 042598 333 FYRMGEWG 340 (503)
Q Consensus 333 ~~~m~~~g 340 (503)
|++..+.+
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99887764
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.51 E-value=2.8e-06 Score=86.63 Aligned_cols=152 Identities=10% Similarity=-0.113 Sum_probs=116.1
Q ss_pred CCChHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHH
Q 042598 144 RKDFKAIHDFLVDNK-E-VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKL 221 (503)
Q Consensus 144 ~~~~~~a~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 221 (503)
.|++++|...+++.- . +.+...|..+...|.+.|++++|++.|++..+. .+.+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888762 2 346889999999999999999999999998863 234578899999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCCCCCCCcHHHHHHHH
Q 042598 222 VKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKL---CRKKDPFRLDSEAEKVL 298 (503)
Q Consensus 222 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~~~~~~~~a~~~~ 298 (503)
|++..+..+.+...+..+...|.+.|++++|.+.|++..+.. ..+...+..+..++... |+ .++|.+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~-------~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRA-------LDVLSAQV 151 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTT-------HHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccc-------HHHHHHHH
Confidence 999866555678899999999999999999999999988753 33577888899999998 65 89999999
Q ss_pred HHHHhCC
Q 042598 299 LDMEYNG 305 (503)
Q Consensus 299 ~~m~~~g 305 (503)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9988754
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=1.9e-05 Score=69.06 Aligned_cols=179 Identities=13% Similarity=0.026 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 042598 218 AEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKV 297 (503)
Q Consensus 218 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~ 297 (503)
|+++|++..+. -+...+..+-..|...+++++|++.|++..+.| +...+..|-..|.. +.. ....++|.+.
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~---~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQ---QADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STT---SCCHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCC---CCCHHHHHHH
Confidence 34444444332 344555555556666666666666666666544 34445555555554 310 0125666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----hCCHhHHHHHH
Q 042598 298 LLDMEYNGVPRNVETFNVLISNLCK----IRRSEDAIKLFYRMGEWGCH-PNETTFLVLIKSLYQ----AARVGEGDEMI 368 (503)
Q Consensus 298 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~~~~~~a~~~~ 368 (503)
|+...+.| +...+..+-..|.. .+++++|+++|++..+.|.. -+...+..|-..|.. .++.++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665533 44555555556655 66777777777777665421 014556666666666 66777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhCC
Q 042598 369 DRMKSAGYAIGKKDYYEFLTRLCGI-E-----RIEQAMSVFEKMKTDG 410 (503)
Q Consensus 369 ~~m~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 410 (503)
++..+. ..+...+..|-.+|... | +.++|.++|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777664 12334455555555432 2 6777777777776554
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=6.1e-05 Score=69.49 Aligned_cols=226 Identities=9% Similarity=0.008 Sum_probs=168.4
Q ss_pred hCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH----HhcCCC
Q 042598 211 ENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG--KLDEAKRLAREMYRGGFELGTVAYNCILDCV----SKLCRK 284 (503)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~ 284 (503)
+...-++|+++++.+..--+-+...|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ .+.+..
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3444568999999886644455677888888888888 9999999999998753 22344555444444 333210
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC--
Q 042598 285 KDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSE--DAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR-- 360 (503)
Q Consensus 285 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~-- 360 (503)
..++++.++++.+.+.. +.|-..|+--.-.+.+.|.++ ++++.++++.+.+.. |-..|+.-.....+.+.
T Consensus 124 ----~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 124 ----FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp ----CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred ----CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 12789999999988754 468888888887888888888 999999999987654 77777766666666665
Q ss_pred ----HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHH
Q 042598 361 ----VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQ-AMSVFEKMKTDG--HNPDSETYDLLMTKWCAHNRVDK 433 (503)
Q Consensus 361 ----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~ 433 (503)
++++.+.++.++... .-|...|+.+-..+.+.|+... +..+.+++.+.+ -..+...+..+...|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 889999999988854 3477888888888888887444 555766665432 13577889999999999999999
Q ss_pred HHHHHHHHHHC
Q 042598 434 ANALFDEAVRN 444 (503)
Q Consensus 434 A~~~~~~m~~~ 444 (503)
|.++++.+.+.
T Consensus 277 A~~~~~~l~~~ 287 (306)
T 3dra_A 277 SRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998863
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=4.8e-06 Score=76.75 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=130.5
Q ss_pred cCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 042598 266 LGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE 345 (503)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (503)
.+...+..+...+.+.|+ .++|...|++..+.. +-+...+..+...|.+.|++++|..+|++.... .|+.
T Consensus 115 ~~~~~~~~~a~~~~~~g~-------~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~ 184 (287)
T 3qou_A 115 REEELXAQQAMQLMQESN-------YTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDT 184 (287)
T ss_dssp CHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSH
T ss_pred CchhhHHHHHHHHHhCCC-------HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcch
Confidence 344566677777888888 899999999987654 246678888999999999999999999988765 3554
Q ss_pred HHHHH-HHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 042598 346 TTFLV-LIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD---SETYDLL 421 (503)
Q Consensus 346 ~t~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 421 (503)
..... ....+...++.++|.+.+++..+.. +.+...+..+...|...|++++|...|+++.+. .|+ ...+..+
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l 261 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHH
Confidence 43322 2234667788888999999888853 346788889999999999999999999999875 444 5789999
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 042598 422 MTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~m~ 442 (503)
...|...|+.++|...|++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999888754
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.46 E-value=1.8e-05 Score=68.97 Aligned_cols=128 Identities=10% Similarity=-0.108 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhC
Q 042598 133 TLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCEN 212 (503)
Q Consensus 133 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~ 212 (503)
.+..+...+...|++++|...+++.- .++..+|..+...|.+.|++++|++.|++..+. .+.+...|..+..+|...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHc
Confidence 34455667788999999999999874 568999999999999999999999999998874 244678899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042598 213 GYASYAEKLVKDTANEIFPDD----------------KICDLLIKGWCVDGKLDEAKRLAREMYRGG 263 (503)
Q Consensus 213 g~~~~a~~~~~~~~~~~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 263 (503)
|++++|+..|++.....+.+. ..+..+..+|...|++++|.+.|++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999865333333 788899999999999999999999998753
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=6.4e-05 Score=69.31 Aligned_cols=130 Identities=10% Similarity=-0.026 Sum_probs=85.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH---
Q 042598 126 NFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKT---LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK--- 199 (503)
Q Consensus 126 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--- 199 (503)
...|+..+...+...+.-.- + .++..... .+... +...+..+...|++++|..++++..+.....++.
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~--~---~~~~~~~~-~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~ 114 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPI--I---HFYEVLIY-SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF 114 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCT--H---HHHHTTTS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcCH--H---HHhCCCCC-CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH
Confidence 34577777777776665322 1 22222221 22333 3344677889999999999999988642223332
Q ss_pred -HhHHHHHHHHHhCCChhHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 200 -DSLRLVVEKLCENGYASYAEKLVKDTAN--EIFPD----DKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 200 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
..+..+...+...|++++|+..|++... .-..+ ..+++.+...|...|++++|...|++..+
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334466667778899999999998754 11222 34688899999999999999999998873
No 117
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=9.4e-06 Score=63.46 Aligned_cols=114 Identities=8% Similarity=0.011 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
...+..+...+...|++++|++.|+++.+. .+.+...+..+...+.+.|++++|..+|+++....+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 567778888888999999999999988764 234677888888889999999999999988866445567888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVS 279 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 279 (503)
|...|++++|...++++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 999999999999999887653 223444444444443
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=1.3e-05 Score=66.42 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 389 (503)
...|..+...+...|++++|...|++..+.. ..+..++..+...+...|++++|.+.++...+.. ..+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3467778888999999999999999988753 2367888889999999999999999999998853 3467788889999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHH
Q 042598 390 LCGIERIEQAMSVFEKMKTDGHNPDSETYDLL--MTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 443 (503)
+...|++++|.+.|++..+.. +.+...+..+ ...+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988652 3355555443 4447788999999999987654
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.39 E-value=5.7e-06 Score=67.94 Aligned_cols=135 Identities=8% Similarity=-0.087 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
+++|...+....... +-+...+-.+...|.+.|++++|++.|++..+... -+..+|..+..++...|++++|...|+.
T Consensus 13 ~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 13 VERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 566666665554321 12334555566677777777777777777666431 2456666677777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042598 371 MKSAGYAIGKKDYYEFLTRLCGIERIEQAMSV-FEKMKTDGHNPDSETYDLLMTKWCAHN 429 (503)
Q Consensus 371 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (503)
..+.. +-+...+..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|
T Consensus 91 al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 91 SVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66632 12455666666677777776655544 35544431 234455555555555544
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=0.0013 Score=65.26 Aligned_cols=322 Identities=10% Similarity=0.014 Sum_probs=184.9
Q ss_pred HHHHHHHHccCC-chhHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCh-HHHHHHHHh----ccC-CCCHHHHHHH
Q 042598 97 PSLVQSTLNFSP-EAGRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDF-KAIHDFLVD----NKE-VLGPKTLASC 169 (503)
Q Consensus 97 ~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~----~~~-~~~~~~~~~l 169 (503)
-..+...+...| ...+.+..+|+..... .|+...|...+....+.++. +.+..+++. +|. ..+...|...
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 445555554444 4477888999888762 47999998888877666532 334444433 353 3577889888
Q ss_pred HHHHH----HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHH--------------------------------------
Q 042598 170 IDRLV----RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVE-------------------------------------- 207 (503)
Q Consensus 170 i~~~~----~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~-------------------------------------- 207 (503)
+..+. ..|+.+.+.++|+..... ....-...|.....
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 87654 356788999999999863 21111112211111
Q ss_pred ------HHHh--CCC---------hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 042598 208 ------KLCE--NGY---------ASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVA 270 (503)
Q Consensus 208 ------~~~~--~g~---------~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 270 (503)
.|+. .++ .+.+..+|++.....+-+...|-..+..+.+.|+.++|..+|++.... +.+...
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 0100 011 122344555554434445666777777777778888888888887775 222222
Q ss_pred HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC-----CC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 042598 271 YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN-----GV---PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCH 342 (503)
Q Consensus 271 ~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~-----g~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 342 (503)
+. .|+...+.. +....+.+..... +. ......|-..+..+.+.+..+.|..+|++. ... .
T Consensus 249 ~~----~y~~~~e~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~ 316 (493)
T 2uy1_A 249 SL----YYGLVMDEE------AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-G 316 (493)
T ss_dssp HH----HHHHHTTCT------HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-C
T ss_pred HH----HHHhhcchh------HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-C
Confidence 21 222221110 0011111110000 00 011245666666666777888888888888 321 1
Q ss_pred CCHHHHHH--HHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042598 343 PNETTFLV--LIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDL 420 (503)
Q Consensus 343 p~~~t~~~--li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 420 (503)
.+...|.. .+... ..++.+.|..+|+...+.- .-+...+...++...+.|+.+.|..+|+... .....|..
T Consensus 317 ~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 23334432 22222 2336888888888887742 2234455667777777888888888888863 25677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 042598 421 LMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+.-=...|+.+.+..+++++.+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77766777888888888877764
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=7.2e-05 Score=68.96 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHhcC----CCCC--H
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK----DSLRLVVEKLCENGYASYAEKLVKDTANE----IFPD--D 233 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~p~--~ 233 (503)
..+...+..+...|++++|.+.+++..+.....++. ..+..+...+...|++++|+..+++.... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 345566778889999999999998877641111111 22344556677889999999999887431 1122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC---
Q 042598 234 KICDLLIKGWCVDGKLDEAKRLAREMYRG----GFEL--GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN--- 304 (503)
Q Consensus 234 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~--- 304 (503)
.+|+.+...|...|++++|...|++..+. +..+ ...++..+...|.+.|+ +++|.+.++...+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-------y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-------YEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-------HHHHHHHHHHHHHHHHh
Confidence 58889999999999999999999987631 1111 11455666666666666 55555555544321
Q ss_pred -CCCC-ChhhHHHHHHHHHccCCHHHH-HHHHHHH
Q 042598 305 -GVPR-NVETFNVLISNLCKIRRSEDA-IKLFYRM 336 (503)
Q Consensus 305 -g~~~-~~~~~~~li~~~~~~g~~~~A-~~l~~~m 336 (503)
+... -..+|..+...|.+.|++++| ...|++.
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1101 134455555566666666666 4445443
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=7.7e-06 Score=70.59 Aligned_cols=156 Identities=11% Similarity=-0.037 Sum_probs=86.3
Q ss_pred hCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-CHHHHHHHHHHHHhcCCCC
Q 042598 211 ENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR----GGFEL-GTVAYNCILDCVSKLCRKK 285 (503)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~ 285 (503)
..|++++|.++++.+.........++..+...+...|++++|...+++..+ .|..+ ...++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN-- 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--
Confidence 345555555533333221112344555555555556666666665555543 11111 23455556666666666
Q ss_pred CCCCcHHHHHHHHHHHHhC----CCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCC--HHHHHHHHHH
Q 042598 286 DPFRLDSEAEKVLLDMEYN----GVP--RNVETFNVLISNLCKIRRSEDAIKLFYRMGEW---GCHPN--ETTFLVLIKS 354 (503)
Q Consensus 286 ~~~~~~~~a~~~~~~m~~~----g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~--~~t~~~li~~ 354 (503)
+++|.+.+.+..+. +-. .....+..+...|...|++++|...+++..+. .-.+. ..++..+...
T Consensus 82 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 82 -----WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp -----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 55555555544321 111 12345777788888899999999998886532 11111 2345667777
Q ss_pred HHHhCCHhHHHHHHHHHHH
Q 042598 355 LYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~ 373 (503)
+...|++++|.+.+++..+
T Consensus 157 ~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHH
Confidence 7788888888888777655
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=2.1e-05 Score=61.42 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 389 (503)
...|..+...|...|++++|.++|+++.+.. ..+..++..+...+...|++++|..+++.+.+.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566777777777888888888888776653 2345667777777777777777777777776642 2355666677777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 390 LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
|...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777777777777766542 223444444444443
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.33 E-value=4.6e-05 Score=70.27 Aligned_cols=168 Identities=9% Similarity=-0.061 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---
Q 042598 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN-----VETFNVLISNLCKIRRSEDAIKLFYRMGEWG--- 340 (503)
Q Consensus 269 ~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 340 (503)
..+...+..+...|+ +++|.+.+....+.....+ ...+..+...|...|++++|+..|++..+..
T Consensus 76 ~~l~~~~~~~~~~~~-------y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKR-------YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhhh-------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 344556677778888 8899999987766432211 1234445667788899999999999987532
Q ss_pred CCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC---
Q 042598 341 CHPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSA-GYAIG-----KKDYYEFLTRLCGIERIEQAMSVFEKMKTD--- 409 (503)
Q Consensus 341 ~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 409 (503)
..+. ..+|+.+...|...|++++|...++++.+. ...++ ..+++.+...|.+.|++++|.+.+++..+.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 1222 458888999999999999999999998742 11122 257888999999999999999999987643
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 042598 410 -GHNP-DSETYDLLMTKWCAHNRVDKA-NALFDEAVR 443 (503)
Q Consensus 410 -g~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 443 (503)
+... -..+|..+...|.+.|++++| ...+++...
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1111 156788899999999999999 777877654
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=1.5e-05 Score=63.16 Aligned_cols=119 Identities=8% Similarity=-0.132 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
.+...+..+...+...|++++|++.|++..+. .+.+...+..+...|...|++++|+..+++.....+.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45667888888888899999999999888753 2336778888888888899999999998887664445677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 282 (503)
..+...|++++|.+.|++..+.. .-+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 88999999999999999887642 223445555555555443
No 126
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.31 E-value=3.9e-06 Score=68.95 Aligned_cols=141 Identities=6% Similarity=-0.084 Sum_probs=105.3
Q ss_pred HHHhcCCChHHHHHHHHhccC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChh
Q 042598 139 DYFGRRKDFKAIHDFLVDNKE-VL-GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYAS 216 (503)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~ 216 (503)
.++...|++++|...+.+.-. .| +...+-.+-..|.+.|++++|++.|++..+. -+-+...|..+-.+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 344556788888888877533 22 3345667888999999999999999998864 2346788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCc-CHHHHHHHHHHHHhcCC
Q 042598 217 YAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRL-AREMYRGGFEL-GTVAYNCILDCVSKLCR 283 (503)
Q Consensus 217 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~-~~~~~~~li~~~~~~g~ 283 (503)
+|+..|++..+-.+-+..+|..+...|.+.|++++|.+. +++..+. .| +..+|......+.+.|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999999988664445678899999999999998876655 5776663 34 45667666666665554
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=7.2e-06 Score=70.77 Aligned_cols=156 Identities=8% Similarity=-0.122 Sum_probs=105.5
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc-----CCC-CCHHHHHHHHHHHHhcC
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN-----EIF-PDDKICDLLIKGWCVDG 247 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~-p~~~~~~~li~~~~~~g 247 (503)
...|++++|.++++.+... ......+++.+-..+...|++++|...+++... +.. ....++..+...|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4567888888855554431 113456777777888888888888888877632 111 23456778888888999
Q ss_pred CHHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh----CCCC-CChhhHHHH
Q 042598 248 KLDEAKRLAREMYRG----GFEL--GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY----NGVP-RNVETFNVL 316 (503)
Q Consensus 248 ~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~----~g~~-~~~~~~~~l 316 (503)
++++|.+.+++..+. |-.+ ....+..+...+...|+ +++|...+++... .+.. .-..++..+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-------LAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999998887653 2121 24567788888888888 7788888777653 1211 113346778
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~ 338 (503)
...|...|++++|.+.+++..+
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 8899999999999999987654
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=2.3e-05 Score=61.77 Aligned_cols=119 Identities=8% Similarity=-0.119 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...+...|++++|+..|++..+. .+.+...+..+...+...|++++|...+++.....+.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 4556777888888899999999999988764 23467788888888999999999999998876644456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
.+...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 9999999999999999887753 2356677777777776665
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=7.7e-06 Score=75.10 Aligned_cols=193 Identities=11% Similarity=-0.015 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++.....+.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5667788888899999999999999998864 22367888889999999999999999999887755567788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGT-VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 320 (503)
+|...|++++|...|++..+.+ |+. ..+...+....+. .++. .+........+.+......+ ..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~i~~~l-~~l 146 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI----------AKKK-RWNSIEERRIHQESELHSYL-TRL 146 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH----------HHHH-HHHHHHHTCCCCCCHHHHHH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH----------HHHH-HHHHHHHHHHhhhHHHHHHH-HHH
Confidence 9999999999999999877532 211 0111111111111 1111 11222223333343333333 222
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHh-CCHhHHHHHHHHHHH
Q 042598 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFL-VLIKSLYQA-ARVGEGDEMIDRMKS 373 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~-~~~~~a~~~~~~m~~ 373 (503)
..|+.++|++.+++..+. .|+..... .+-..+.+. +.++++.++|..+.+
T Consensus 147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 257778888777766553 45443322 222223333 556677777776654
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.29 E-value=3.5e-05 Score=63.86 Aligned_cols=129 Identities=10% Similarity=-0.150 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
...+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...+++.....+.+...|..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345666777788888888888888887764 233577788888888888888888888887765444567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 042598 243 WCVDGKLDEAKRLAREMYRGGFELGTVAYN--CILDCVSKLCRKKDPFRLDSEAEKVLLDM 301 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~~~~~~~~a~~~~~~m 301 (503)
+...|++++|...|++..+.. +.+...+. .+...+.+.|+ +++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKA-------FERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH-------HHHHHHcccch
Confidence 888888888888888877643 22333442 23333555555 66676666554
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=2.7e-05 Score=61.35 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=95.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
.+...|..+...+...|++++|+..|++..+.. ..+...+..+...+...|++++|.+.++...+.. ..+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 345677778888889999999999999887753 2356778888888899999999999999888753 33567788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRV 431 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 431 (503)
..|...|++++|.+.|++..+.. +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999887652 34667777777777777764
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.27 E-value=1.9e-05 Score=71.27 Aligned_cols=195 Identities=9% Similarity=-0.050 Sum_probs=116.2
Q ss_pred hCCChhHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----------------
Q 042598 211 ENGYASYAEKLVKDTANEIFPDDKICDLL-------IKGWCVDGKLDEAKRLAREMYRGGFELG---------------- 267 (503)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~---------------- 267 (503)
..++...|.+.|.+...-.+-....|..+ ...+.+.+...+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45666666666666654333444555555 3334444444444443333332 2221
Q ss_pred ------HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 042598 268 ------TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGC 341 (503)
Q Consensus 268 ------~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (503)
....-.....+...|+ +++|.++|+.+...+ |+......+...|.+.+++++|+..|+......
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~-------y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGN-------YADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTC-------HHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred cccCCHhHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 1233344556666777 788888888776644 333355555667888888888888887443321
Q ss_pred CCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 042598 342 HPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG--KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET 417 (503)
Q Consensus 342 ~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 417 (503)
.|. ...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~ 243 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKV 243 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH
Confidence 111 23566677788888888888888888875333243 234555666777888888888888888764 455333
Q ss_pred HH
Q 042598 418 YD 419 (503)
Q Consensus 418 ~~ 419 (503)
+.
T Consensus 244 ~~ 245 (282)
T 4f3v_A 244 AA 245 (282)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=0.00069 Score=63.22 Aligned_cols=181 Identities=8% Similarity=-0.099 Sum_probs=115.5
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCC-CHHhHHHHHHHHHhCC-ChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CH
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKR-DKDSLRLVVEKLCENG-YASYAEKLVKDTANEIFPDDKICDLLIKGWCVD-G-KL 249 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~ 249 (503)
.+.+..++|+++++.+... .| +..+|+.--..+...| .+++++++++.+....+.+..+|+.--..+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344456788888877754 33 3455666666666666 478888888887766666777777766666665 6 77
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---
Q 042598 250 DEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKD-PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR--- 325 (503)
Q Consensus 250 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 325 (503)
++++++++.+.+.. .-+-.+|+--.-.+.+.|.... ....+.++.+.++.+.+... .|...|+-....+.+.++
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 88888888877653 3355555544444444443210 01123477888888877553 577888888777777775
Q ss_pred ----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 042598 326 ----SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360 (503)
Q Consensus 326 ----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~ 360 (503)
++++++.+++....... |...|+-+-..+.+.|.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67888888887775432 66667665555555554
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=2.6e-05 Score=61.82 Aligned_cols=119 Identities=10% Similarity=-0.046 Sum_probs=79.1
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
.+...|..+...+.+.|++++|+..|++..+.. ..+...+..+...+...|++++|.+.++++.+.. ..+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 455667777777788888888888888776643 2256667777777777778888888777777642 23456677777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHN 429 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 429 (503)
..|.+.|++++|.+.|++..+.. +-+...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777777777777777766531 223345555555555443
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.21 E-value=3.3e-05 Score=72.83 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=111.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN--------------ETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
+...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++.+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788888999999999999999999887542211 478899999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 042598 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKA-NALFDEAVR 443 (503)
Q Consensus 375 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 443 (503)
. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++| ..+|+.|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3467889999999999999999999999988752 44677888999999999999988 556777654
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.20 E-value=4.3e-05 Score=60.50 Aligned_cols=97 Identities=6% Similarity=-0.167 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGW 243 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~ 243 (503)
..+...-..|.+.|++++|++.|++..+. .+.+...|..+-.+|.+.|++++|+..|++..+--+.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45677788899999999999999998764 2346788888999999999999999999988664456678899999999
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042598 244 CVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 244 ~~~g~~~~a~~~~~~m~~~ 262 (503)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998874
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.19 E-value=1.6e-05 Score=67.15 Aligned_cols=122 Identities=9% Similarity=0.018 Sum_probs=89.2
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH--H
Q 042598 321 CKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR-LCGIERI--E 397 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 397 (503)
...|++++|+..|++..+.. ..+...+..+...|...|++++|...|+.+.+.. ..+...+..+... |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888888876653 2356777888888888888888888888887743 2355667777777 6778887 8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 398 QAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 398 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+|...+++..+.. +-+...|..+...|...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888887652 3456778888888888899999999998888765
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.18 E-value=7.2e-05 Score=59.15 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=63.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLC 391 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 391 (503)
.|......|.+.|++++|++.|++..+.. +-+...|..+..++.+.|++++|.+.++..++.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556666777777777777777766643 2255666667777777777777777777766642 224556666666777
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 042598 392 GIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~ 409 (503)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777766653
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00085 Score=62.62 Aligned_cols=224 Identities=12% Similarity=0.010 Sum_probs=160.0
Q ss_pred HhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-C-CCCC
Q 042598 210 CENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG-KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKL-C-RKKD 286 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~ 286 (503)
.+.+..++|+++++.+..-.+-+..+|+.--..+...| .+++++++++.+.... .-+..+|+.--..+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~--- 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD--- 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC---
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC---
Confidence 34455578999999887655556677888777777888 5999999999999864 33566777666666655 4 3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 042598 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSE--------DAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358 (503)
Q Consensus 287 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 358 (503)
.+++.++++.+.+.. +.|-..|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.
T Consensus 141 ----~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 141 ----PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR 214 (349)
T ss_dssp ----CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred ----hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 578999999988755 357788877655555555555 999999999987644 778888777777777
Q ss_pred CC-------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHhCC-
Q 042598 359 AR-------VGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERI--------------------EQAMSVFEKMKTDG- 410 (503)
Q Consensus 359 ~~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~g- 410 (503)
+. ++++.+.+++++... .-|...|+-+-..+.+.|+- ....++..++...+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 75 688899998888753 34677777766666665543 33444444444321
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 411 ----HNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 411 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
-.+....+..|...|...|+.++|.++++.+.+.
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1367788899999999999999999999998754
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.16 E-value=1.3e-05 Score=73.53 Aligned_cols=194 Identities=12% Similarity=0.013 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChh
Q 042598 232 DDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVE 311 (503)
Q Consensus 232 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 311 (503)
+...+..+...+.+.|++++|...|++..+.. .-+...|..+..+|.+.|+ +++|...++...+.. +.+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~~~-p~~~~ 73 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ-------PEQALADCRRALELD-GQSVK 73 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTTSC-TTCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhC-CCCHH
Confidence 34556666777777777888877777776642 2256677777777777777 777887777776543 24566
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNE-TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL 390 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 390 (503)
.|..+..+|...|++++|+..|++..+.+ |+. ..+...+....+. .++ .-+..........+......+-. +
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~-l 146 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTR-L 146 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHH-H
Confidence 77778888888888888888888776532 211 1111111111111 111 11222333334444444333322 2
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 042598 391 CGIERIEQAMSVFEKMKTDGHNPDSE-TYDLLMTKWCAH-NRVDKANALFDEAVRN 444 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 444 (503)
..|+.++|.+.+++..+. .|+.. ....+-..+.+. +.+++|.++|.+..+.
T Consensus 147 -~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 257888888888877654 45443 333343344444 5678888888877653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.15 E-value=2e-05 Score=66.51 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCCCCCCCc
Q 042598 212 NGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDC-VSKLCRKKDPFRL 290 (503)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~~~~~ 290 (503)
.|++++|...++......+.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|+
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~------- 94 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ------- 94 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT-------
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC-------
Confidence 4455555555555433233344555555555666666666666666555432 1234444445555 445454
Q ss_pred H--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 291 D--SEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 291 ~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
. ++|...|+...+.. +.+...|..+...|...|++++|...|++..+.
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 3 55666665555432 123455566666666667777777776666554
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.14 E-value=7.6e-05 Score=61.14 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (503)
..+..+...+.+.|++++|...|+.+.+.. +-+...|..+..+|...|++++|...|++..+.. +-+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 345555566666666666666666666632 2245566666666666666777766666666542 23455666666666
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 042598 426 CAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~g 445 (503)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 67777777777766666543
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.09 E-value=3.6e-05 Score=63.09 Aligned_cols=104 Identities=11% Similarity=-0.193 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+-..+.+.|++++|+..|+...+. -+.+...|..+-.+|...|++++|+..|++...-.+.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 4557788888899999999999999999874 23467889999999999999999999999987644556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELGTV 269 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 269 (503)
+|...|++++|...|++..+. .||..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999875 45543
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=0.00011 Score=56.49 Aligned_cols=98 Identities=12% Similarity=-0.045 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
...+..+...+...|++++|.+.|+..... .+.+...+..+...+...|++++|...+++.....+.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 456777778888888888888888888764 233677788888888888888888888888765444567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 042598 243 WCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~ 262 (503)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 88889999999988888765
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.05 E-value=8.5e-05 Score=70.03 Aligned_cols=129 Identities=10% Similarity=-0.048 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC----------------HHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD----------------KDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
+...+..+-..|.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|+..|++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888889999999999999999998865 333 478999999999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHH-HHHHHHH
Q 042598 226 ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEA-EKVLLDM 301 (503)
Q Consensus 226 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a-~~~~~~m 301 (503)
....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+ .++| ...+..|
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~-------~~~a~~~~~~~~ 291 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR-------QLAREKKLYANM 291 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 76555678899999999999999999999999988753 3356778888888888877 5555 3344444
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.00033 Score=53.67 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTR 389 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 389 (503)
...|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456666777777788888888887776643 2255666667777777777777777777776642 2245666667777
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 042598 390 LCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~ 409 (503)
|...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777776654
No 147
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.02 E-value=0.0018 Score=64.29 Aligned_cols=306 Identities=8% Similarity=-0.033 Sum_probs=172.3
Q ss_pred CCCCHHHHHHHHHHHhcCCChHHHHHHHHhc-cCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHHhcCC-CCCHHhHH
Q 042598 127 FSHTDETLSFFTDYFGRRKDFKAIHDFLVDN-KEVLGPKTLASCIDRLVRAGR-PTQVLGFFERMERDYGF-KRDKDSLR 203 (503)
Q Consensus 127 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~~~~-~~~~~~~~ 203 (503)
+..-..+|...+..+-. ++++.+..+|++. ...|+...|...+.-..+.++ .+....+|+......|. ..+...|.
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 55667889999998876 8899999999986 346899999999988887774 46678899988876554 34778888
Q ss_pred HHHHHHH----hCCChhHHHHHHHHHhcCCCC-C-HHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHCCC
Q 042598 204 LVVEKLC----ENGYASYAEKLVKDTANEIFP-D-DKICDLLIKGWCV-------------DGKLDEAKRLAREMYRGGF 264 (503)
Q Consensus 204 ~ll~~~~----~~g~~~~a~~~~~~~~~~~~p-~-~~~~~~li~~~~~-------------~g~~~~a~~~~~~m~~~g~ 264 (503)
..+..+. ..|+++.+..+|+.... +++ + ...|......-.. .+.+..|..+++++...--
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 8887654 34678889999999866 222 1 1233322221101 1122334444444432100
Q ss_pred CcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 042598 265 ELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (503)
..+...|...++.--..+.........+.+..+|++..... +.+...|-..+.-+.+.|+.++|..+|++.... |+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~ 244 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SD 244 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CC
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Confidence 01233444444432211100000001234667788776533 345778888888888899999999999988776 43
Q ss_pred HHH-----------------------------------------HHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHH
Q 042598 345 ETT-----------------------------------------FLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383 (503)
Q Consensus 345 ~~t-----------------------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 383 (503)
... |...+....+.++.+.|..+|+.. +.. ..+...|
T Consensus 245 ~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~ 322 (493)
T 2uy1_A 245 GMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVF 322 (493)
T ss_dssp SSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHH
T ss_pred cHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHH
Confidence 221 111122222344566666666666 211 1223333
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 384 YEFLTRLCGI-ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 384 ~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
......-... ++.+.|..+|+...+. ++-+...|...+.-..+.|+.+.|..+|+..
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3222221222 2466666666666543 1223344555555555666666666666664
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.02 E-value=3.4e-05 Score=63.03 Aligned_cols=97 Identities=6% Similarity=-0.031 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042598 346 TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKW 425 (503)
Q Consensus 346 ~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 425 (503)
..+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555666666666666666665532 2245555566666666666666666666665432 23455666666666
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 042598 426 CAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~ 444 (503)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777666666554
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=0.00013 Score=57.34 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC--CCC----HHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY--AIG----KKDYY 384 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~ 384 (503)
..|..+...|...|++++|...|++..+.. ..+...+..+...+...|++++|...++.+.+... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677777888888888888888877653 23566777777788888888888888887776421 122 55666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042598 385 EFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMT 423 (503)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 423 (503)
.+...|...|++++|.+.|++..+. .|+...+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 6777777777888888877777664 455555544433
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.00 E-value=6.2e-05 Score=67.97 Aligned_cols=186 Identities=7% Similarity=-0.073 Sum_probs=119.1
Q ss_pred HcCChhHHHHHHHHhHHhcCCCC-CHHhHHHH-------HHHHHhCCChhHHHHHHHHHhcCCCC-------C-------
Q 042598 175 RAGRPTQVLGFFERMERDYGFKR-DKDSLRLV-------VEKLCENGYASYAEKLVKDTANEIFP-------D------- 232 (503)
Q Consensus 175 ~~g~~~~A~~~f~~m~~~~~~~~-~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~p-------~------- 232 (503)
..++...|++.|.+..+. .| ....|..+ ...+.+.++..+++..+..-. ++.| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~---dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l-~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY---DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV-QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT-TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh---ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh-cCChhhhhhhhccCCcccc
Confidence 467888888888887764 33 34556655 233333333344433333221 1111 1
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC
Q 042598 233 --------DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN 304 (503)
Q Consensus 233 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~ 304 (503)
...+-.....+...|++++|.++|+.+...+ |+....-.+-..+.+.++ +++|+..|+.....
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r-------~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAER-------WTDVIDQVKSAGKW 164 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTC-------HHHHHHHHTTGGGC
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCC-------HHHHHHHHHHhhcc
Confidence 2233446667778899999999998877643 443344444556777777 88899888755432
Q ss_pred CCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 305 GVPR--NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN--ETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 305 g~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
. .+ ....+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 11 123667778889999999999999998875433254 234555667788999999999999999884
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=0.00012 Score=57.83 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC--CCCC----HHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG--YAIG----KKDYY 384 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~ 384 (503)
..+..+...|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|.+.++..++.. ...+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456667777888888888888888877653 2245677777778888888888888887776531 1111 12455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042598 385 EFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETY 418 (503)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 418 (503)
.+-..|...|++++|++.|++..+. .||..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 5556666667777777776665542 4554433
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.99 E-value=0.00014 Score=55.40 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCC--CHHHHHHH
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI--GKKDYYEF 386 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l 386 (503)
+...|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|.+.+++..+.. .. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455555666666666666666666665542 1234455555555555566666666555555531 11 34445555
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHh
Q 042598 387 LTRLCGI-ERIEQAMSVFEKMKT 408 (503)
Q Consensus 387 i~~~~~~-g~~~~A~~~~~~m~~ 408 (503)
...|... |++++|.+.+++..+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 5555555 555555555555543
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.98 E-value=0.00024 Score=55.84 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL 390 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 390 (503)
..|......+.+.|++++|+..|++..+.. ..+...|..+..++.+.|++++|...++...+.. +-+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455566667777777777777777776653 2245667777777777777777777777776643 22455666677777
Q ss_pred HccCCHHHHHHHHHHHHh
Q 042598 391 CGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~ 408 (503)
...|++++|.+.|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777776664
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.98 E-value=0.00019 Score=56.38 Aligned_cols=98 Identities=5% Similarity=-0.179 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKG 242 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~ 242 (503)
...|..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 456777778888999999999999988764 234678888889999999999999999998866445567888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 042598 243 WCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 243 ~~~~g~~~~a~~~~~~m~~~ 262 (503)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 155
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.98 E-value=8.8e-05 Score=60.55 Aligned_cols=99 Identities=12% Similarity=-0.123 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...+.+.|++++|+..|+..... -+.+...|..+-.+|...|++++|+..|++.....+.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4556777888889999999999999988764 23467888888889999999999999999886644456788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 042598 242 GWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~ 262 (503)
+|...|++++|.+.|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988763
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00022 Score=57.50 Aligned_cols=99 Identities=13% Similarity=-0.092 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC----HHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD----KDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKIC 236 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~ 236 (503)
.+...+..+...+...|++++|++.|++..+. .|+ ...|..+..+|...|++++|+..+++.....+.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 35667777778888888888888888887753 455 56777777888888888888888887755434466777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
..+..+|...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 78888888888888888888887764
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=6e-05 Score=61.79 Aligned_cols=135 Identities=10% Similarity=0.002 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCC-CCC----
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGC-HPN----ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGY-AIG---- 379 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~---- 379 (503)
..++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|.+.++...+..- ..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677888889999999999999998765311 112 24777888899999999999999998776311 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTD----GHNP-DSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
...+..+...+...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356777888899999999999999877632 1111 1346778888999999999999999987653
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00042 Score=67.50 Aligned_cols=165 Identities=9% Similarity=-0.076 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHH---HHHHHHHHHH-hcCCCCCCCCcHHHHHHHHHHHHh----CCC
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRG-GFELGTV---AYNCILDCVS-KLCRKKDPFRLDSEAEKVLLDMEY----NGV 306 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~---~~~~li~~~~-~~g~~~~~~~~~~~a~~~~~~m~~----~g~ 306 (503)
+..+...|...|++++|.+.+..+... +-..+.. .....+..+. ..|+ .+.|.+++..... .+.
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 130 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDS-------LDDQIFVCEKSIEFAKREKR 130 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSC-------HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHhCc
Confidence 556667777777777777777665531 1111111 1122222222 2222 6667666665432 221
Q ss_pred C-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CC--CC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCC
Q 042598 307 P-RNVETFNVLISNLCKIRRSEDAIKLFYRMGEW--GC--HP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAI 378 (503)
Q Consensus 307 ~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~ 378 (503)
. .-..++..+...|...|++++|..++++.... +. .+ ...+|..++..|...|++++|..+++..... .+..
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 2 22456778889999999999999999887543 11 12 2357888889999999999999999887653 2221
Q ss_pred C----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 379 G----KKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 379 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
+ ...+..+...+...|++++|...|.+..
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 2456667777888999999988877664
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=0.00016 Score=62.09 Aligned_cols=134 Identities=10% Similarity=-0.008 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC--------------HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWGC-HPN--------------ETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
...+..+...+.+.|++++|+..|++..+... .|+ ...|..+..+|...|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44567777888999999999999999877421 111 267777888888889999999888888875
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHCC
Q 042598 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN-ALFDEAVRNG 445 (503)
Q Consensus 375 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g 445 (503)
. ..+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|+.+++. ..+..|...|
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 3356777888888888888999988888877642 335567777777777777666665 4455554443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=0.00018 Score=57.31 Aligned_cols=100 Identities=11% Similarity=-0.135 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
.+...+..+...+...|++++|+..|+..... .+.+...|..+..++...|++++|...++......+.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 46778888888999999999999999988764 2345778888889999999999999999888664445678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 042598 241 KGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
.+|...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.95 E-value=6e-05 Score=57.46 Aligned_cols=99 Identities=14% Similarity=-0.031 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCC--CHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFP--DDKICDLL 239 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p--~~~~~~~l 239 (503)
+...+..+...+...|++++|+..|++..+. .+.+...|..+...+...|++++|...|++..+..+. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3455666777778888888888888887764 2335677777888888888888888888877654444 67778888
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC
Q 042598 240 IKGWCVD-GKLDEAKRLAREMYRG 262 (503)
Q Consensus 240 i~~~~~~-g~~~~a~~~~~~m~~~ 262 (503)
...+... |++++|.+.+++..+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8888888 8888888888887764
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=9.3e-05 Score=58.20 Aligned_cols=111 Identities=7% Similarity=-0.015 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcC---CCCC----HHH
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANE---IFPD----DKI 235 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~p~----~~~ 235 (503)
...+..+...+...|++++|+..|+...+. .+.+...+..+...|...|++++|...+++.... ..++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456777888888999999999999988764 2346778888888899999999999998887442 1222 677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDC 277 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 277 (503)
+..+...+...|++++|.+.|++..+. .|+......+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 888889999999999999999998875 3565555444443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=0.00041 Score=55.91 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=75.2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN----ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDY 383 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 383 (503)
.+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+.. ..+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777888888889999999998888764 455 5667777778888888888888888877742 2246667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
..+...|...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777788888888888888877754
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.94 E-value=0.00028 Score=56.23 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042598 344 NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMT 423 (503)
Q Consensus 344 ~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 423 (503)
+...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44556666666666666666666666665542 2245566666666667777777777777666542 335566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 042598 424 KWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 424 ~~~~~g~~~~A~~~~~~m~~~ 444 (503)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.93 E-value=0.00013 Score=59.00 Aligned_cols=99 Identities=12% Similarity=-0.143 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...+.+.|++++|+..|+..... -+.+...|..+-.+|.+.|++++|+..|+......+.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3445666777888999999999999998764 23467788888889999999999999999886644556778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 042598 242 GWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~ 262 (503)
+|...|++++|...|+...+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.91 E-value=0.0002 Score=57.85 Aligned_cols=95 Identities=12% Similarity=0.011 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042598 348 FLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCA 427 (503)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 427 (503)
+..+...+...|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|++..+.. +-+...|..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344445555566666666665555532 1244455555555666666666666666555432 2344555556666666
Q ss_pred cCChHHHHHHHHHHHHC
Q 042598 428 HNRVDKANALFDEAVRN 444 (503)
Q Consensus 428 ~g~~~~A~~~~~~m~~~ 444 (503)
.|++++|...|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665543
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00095 Score=64.97 Aligned_cols=194 Identities=8% Similarity=-0.053 Sum_probs=134.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC----------------HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC-
Q 042598 242 GWCVDGKLDEAKRLAREMYRGGFELG----------------TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN- 304 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~- 304 (503)
.+.+.|++++|++.|..+.+..-... ...+..+...|.+.|+ +++|.+.+......
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-------~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-------KDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
Confidence 34556777777777777665321110 1246778899999998 78888888776532
Q ss_pred -CCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 305 -GVPRNV----ETFNVLISNLCKIRRSEDAIKLFYRMGE----WGCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 305 -g~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
.+ .+. .+.+.+-..+...|+.++|..++++... .+..+. ..++..+...+...|++++|..+++.+...
T Consensus 86 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 MQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 11 121 2233334445567899999999988754 233333 457788899999999999999999988764
Q ss_pred --CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 375 --GYA--I-GKKDYYEFLTRLCGIERIEQAMSVFEKMKTD--GHNPD----SETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 375 --g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
+.. + ....+..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 221 1 2357888999999999999999999876532 11111 24566777788889999999988877764
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.90 E-value=0.00015 Score=60.17 Aligned_cols=99 Identities=9% Similarity=-0.095 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIK 241 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~ 241 (503)
+...+..+...|.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567788888899999999999999998864 23367888889999999999999999999886644556888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 042598 242 GWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~ 262 (503)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.88 E-value=0.00024 Score=58.91 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=72.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
.+...|..+...|.+.|++++|+..|++..+.. .-+...|..+..+|...|++++|...++..++.. .-+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345667777778888888888888888877653 2256677777777888888888888888877743 22466777777
Q ss_pred HHHHccCCHHHHHHHHHHHHhC
Q 042598 388 TRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
..|...|++++|.+.|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7778888888888888777653
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.87 E-value=0.00025 Score=60.93 Aligned_cols=120 Identities=12% Similarity=-0.084 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC--------------HHhHHHHHHHHHhCCChhHHHHHHHHHhcC
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD--------------KDSLRLVVEKLCENGYASYAEKLVKDTANE 228 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 228 (503)
...+..+...+.+.|++++|++.|++..+...-.++ ...|..+..+|.+.|++++|+..++.....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445677778888999999999999988763111121 267888888999999999999999988665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 229 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
.+.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999988752 2345666666666666554
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.76 E-value=0.026 Score=52.34 Aligned_cols=185 Identities=8% Similarity=-0.027 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-HH
Q 042598 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR-SE 327 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~ 327 (503)
+++++.+++.+.... +-+..+|+.-.-.+.+.|+. .++++..+++.+.+.. +.|...|+--.-.+...|. ++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~-----~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~ 162 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP-----NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 162 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC-----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc-----cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHH
Confidence 345555555555432 22344444444444444321 1455555555555433 2455555555555555555 46
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--------------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 042598 328 DAIKLFYRMGEWGCHPNETTFLVLIKSLYQA--------------ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 393 (503)
++++.++++.+..+. |...|+.....+.+. +.++++.+.+....... +-|...|+-+-..+.+.
T Consensus 163 eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 163 EELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 666666666655432 455555444444333 33556666666666532 22445555443333333
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHHCC
Q 042598 394 -----------ERIEQAMSVFEKMKTDGHNPDSETYDLLMTK-----WCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 394 -----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g 445 (503)
+.++++++.++++.+. .||. .|..+-.+ ....|..+++...+.++.+.+
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3567888888888764 5654 34422222 223566677777777777543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.75 E-value=0.00065 Score=53.31 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCC---HHHHHHH
Q 042598 167 ASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK----DSLRLVVEKLCENGYASYAEKLVKDTANEIFPD---DKICDLL 239 (503)
Q Consensus 167 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~---~~~~~~l 239 (503)
..+...+...|++++|+..|+...+. .|+. ..+..+..++.+.|++++|...|+......+.+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 34556778899999999999998875 2332 477778888999999999999999886533333 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
..++...|++++|...|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999998875
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.72 E-value=0.00055 Score=54.00 Aligned_cols=105 Identities=6% Similarity=-0.107 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc---CCCCC----HHHH
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN---EIFPD----DKIC 236 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~p~----~~~~ 236 (503)
..+..+-..|.+.|++++|++.|++..+. .+-+...|+.+-.+|.+.|++++|++.+++..+ ...++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45667788899999999999999988764 234577888899999999999999999887633 12122 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 042598 237 DLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYN 272 (503)
Q Consensus 237 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 272 (503)
..+-.++...|++++|++.|++.... .||..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 77888899999999999999988763 45655443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.72 E-value=0.00027 Score=55.28 Aligned_cols=95 Identities=11% Similarity=-0.054 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 042598 166 LASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCV 245 (503)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 245 (503)
+..+...+.+.|++++|+..|+...+. -+.+...|..+-.++...|++++|+..|++.....+-+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445566778889999999999888764 233677888888888899999999999988766444567788888888889
Q ss_pred cCCHHHHHHHHHHHHHC
Q 042598 246 DGKLDEAKRLAREMYRG 262 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~ 262 (503)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887753
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.70 E-value=0.00036 Score=56.94 Aligned_cols=132 Identities=10% Similarity=-0.045 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhC----C
Q 042598 235 ICDLLIKGWCVDGKLDEAKRLAREMYRGGFE-LG----TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYN----G 305 (503)
Q Consensus 235 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~----g 305 (503)
++..+...|...|++++|...+++..+..-. .+ ..++..+...+...|+ +++|.+.++...+. +
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-------FETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhC
Confidence 4455555556666666666666655432100 00 1234444444444444 34444444333211 0
Q ss_pred CC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 306 VP-RNVETFNVLISNLCKIRRSEDAIKLFYRMGEW----GCHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 306 ~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.. .....+..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00 01234555555666666666666666554332 1110 123344444555555555555555554443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.68 E-value=0.0017 Score=50.89 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=56.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 042598 315 VLISNLCKIRRSEDAIKLFYRMGEWGCHPNE---TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG--KKDYYEFLTR 389 (503)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~ 389 (503)
.+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++.+.+...... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3445566677777777777776654211 11 3555566666677777777777777666421110 3445556666
Q ss_pred HHccCCHHHHHHHHHHHHhC
Q 042598 390 LCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~ 409 (503)
|...|++++|...|++..+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66677777777777666643
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.67 E-value=0.00046 Score=53.94 Aligned_cols=93 Identities=8% Similarity=-0.065 Sum_probs=47.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG 392 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 392 (503)
+..+...+.+.|++++|+..|++..+.. .-+...|..+..++...|++++|...|++..+.. +-+...+..+...|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555432 1134445555555555555555555555555532 1133444455555555
Q ss_pred cCCHHHHHHHHHHHH
Q 042598 393 IERIEQAMSVFEKMK 407 (503)
Q Consensus 393 ~g~~~~A~~~~~~m~ 407 (503)
.|++++|...+++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555544
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00049 Score=67.83 Aligned_cols=134 Identities=11% Similarity=0.063 Sum_probs=104.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN--------------ETTFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
+...|..+...|.+.|++++|+..|++..+..-.-. ...|..+..+|.+.|++++|...++.+++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345788888999999999999999999877421111 578888999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHC
Q 042598 375 GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN-ALFDEAVRN 444 (503)
Q Consensus 375 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 444 (503)
. .-+...|..+..+|...|++++|...|++..+.. +-+...|..+..++.+.|+.+++. ..++.|...
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 3367888999999999999999999999998752 335567888888899999888776 455555543
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.64 E-value=0.023 Score=52.61 Aligned_cols=184 Identities=6% Similarity=-0.082 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHH
Q 042598 215 ASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG--KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDS 292 (503)
Q Consensus 215 ~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~ 292 (503)
+++++.+++.+....+.+..+|+.-.-.+.+.| .+++++.+++.+.+.. .-|-..|+--.-.+...|.. .+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~------~~ 162 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVA------PA 162 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC------HH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcC------HH
Confidence 344555555554433445555555444444444 2556666666555532 22344444433333333331 34
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 042598 293 EAEKVLLDMEYNGVPRNVETFNVLISNLCKI--------------RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA 358 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 358 (503)
++.+.++.+.+..+ .|...|+-....+.+. +.++++++.+.+...... -|...|+-+-..+.+.
T Consensus 163 eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 163 EELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 55555555554432 3555555444333332 345666666666655432 1445554332222222
Q ss_pred -----------CCHhHHHHHHHHHHHcCCCCCH-HHHHHH---HHHHHccCCHHHHHHHHHHHHhC
Q 042598 359 -----------ARVGEGDEMIDRMKSAGYAIGK-KDYYEF---LTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 359 -----------~~~~~a~~~~~~m~~~g~~~~~-~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
+.++++.+.++++.+. .||. -++-.+ .......|..+++...++++.+.
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3466777777777763 3443 122111 12222456677777788777753
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00018 Score=71.07 Aligned_cols=131 Identities=13% Similarity=-0.007 Sum_probs=89.0
Q ss_pred HHHhCCChhHHHHHHHHHhc----CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCcC-HHHHH
Q 042598 208 KLCENGYASYAEKLVKDTAN----EIFP---D-DKICDLLIKGWCVDGKLDEAKRLAREMYR-----GG-FELG-TVAYN 272 (503)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~----~~~p---~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~~~-~~~~~ 272 (503)
.+...|++++|+.++++... .+.+ + ..+++.|...|...|++++|+.++++..+ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999887622 2223 2 46789999999999999999999998764 22 1233 46789
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 273 CILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 273 ~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
.|...|...|++++|..++++|.+++......+.+-...+.+.+-.++...+++++|..+|.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999994444444444444444333322222334455666777778888888888888765
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.59 E-value=0.00022 Score=70.65 Aligned_cols=122 Identities=14% Similarity=0.069 Sum_probs=90.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 042598 315 VLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 394 (503)
.+...|.+.|++++|++.|++..+.. .-+..+|..+..++.+.|++++|.+.+++..+.. .-+...+..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33445667899999999999887753 2257888888899999999999999999998853 235678888888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 042598 395 RIEQAMSVFEKMKTDGHNPDSETYDLLMTK--WCAHNRVDKANALFD 439 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 439 (503)
++++|.+.|++..+.. +-+...+..+..+ +.+.|++++|+++++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999887642 2234455555555 788899999998887
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.55 E-value=0.00014 Score=56.49 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=37.8
Q ss_pred CCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042598 359 ARVGEGDEMIDRMKSAGY--AIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANA 436 (503)
Q Consensus 359 ~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 436 (503)
|++++|...|++.++.+. +-+...+..+...|...|++++|.+.|++..+.. +-+...+..+..+|...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444555544444220 1122344444445555555555555555544331 2234444555555555555555555
Q ss_pred HHHHHHH
Q 042598 437 LFDEAVR 443 (503)
Q Consensus 437 ~~~~m~~ 443 (503)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00019 Score=70.92 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=88.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CC---CcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHH-------hCCCC
Q 042598 242 GWCVDGKLDEAKRLAREMYRG---GF---ELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDME-------YNGVP 307 (503)
Q Consensus 242 ~~~~~g~~~~a~~~~~~m~~~---g~---~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~-------~~g~~ 307 (503)
.+...|++++|+.++++..+. -+ .|+ ..+++.|...|...|+ +++|+.++++.. ....+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-------~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-------YEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHcCCCCH
Confidence 355789999999999887742 12 222 4689999999999999 566666655543 22233
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGE-----WGC-HPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
-...+++.+...|...|++++|+.+|++..+ .|- .|+ ..+.+.+-.++...+.+++|+.+|..+++
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999987643 131 122 23445556677778888888888888876
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0012 Score=52.94 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 042598 324 RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG----IERIEQA 399 (503)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 399 (503)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45667777777776665 22322 4455555566777777777777654 45566666666666 6777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 042598 400 MSVFEKMKTDGHNPDSETYDLLMTKWCA----HNRVDKANALFDEAVRNGV 446 (503)
Q Consensus 400 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 446 (503)
.++|++..+.| +...+..|-..|.. .++.++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777653 55666667777776 6778888888887777764
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.44 E-value=0.0004 Score=53.78 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHH
Q 042598 291 DSEAEKVLLDMEYNG--VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMI 368 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~ 368 (503)
+++|...|++..+.+ -+.+...|..+...|...|++++|+..|++..+.... +...+..+..++...|++++|...+
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555432 1223445555555666666666666666665554211 3455555555666666666666666
Q ss_pred HHHHH
Q 042598 369 DRMKS 373 (503)
Q Consensus 369 ~~m~~ 373 (503)
+...+
T Consensus 85 ~~al~ 89 (117)
T 3k9i_A 85 LKIIA 89 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.44 E-value=0.0016 Score=64.15 Aligned_cols=121 Identities=8% Similarity=-0.083 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-------------HHhHHHHHHHHHhCCChhHHHHHHHHHhcC
Q 042598 162 GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-------------KDSLRLVVEKLCENGYASYAEKLVKDTANE 228 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 228 (503)
....|..+-..|.+.|++++|+..|++..+...-.++ ...|..+-.+|.+.|++++|+..|++....
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3457788888999999999999999998764111111 578889999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 229 IFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 229 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
.+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999998753 2234567777777777766
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.42 E-value=0.0015 Score=62.31 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWG--------------CHP-NETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------------~~p-~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 375 (503)
..|..+...|.+.|++++|++.|++..+.- ..| +..+|..+..+|.+.|++++|.+.++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 357777888999999999999999876510 111 23556666667777777777777777776632
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 042598 376 YAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKAN 435 (503)
Q Consensus 376 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 435 (503)
.-+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2245566666677777777777777777666541 224455555555555555555543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.41 E-value=0.0018 Score=53.40 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcC----------------CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHh
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYG----------------FKRDKDSLRLVVEKLCENGYASYAEKLVKDTA 226 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 226 (503)
...+......+.+.|++++|+..|+....... .+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566667778888888888888887664200 11234678888889999999999999999886
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 042598 227 NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT 268 (503)
Q Consensus 227 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 268 (503)
...+.+...|..+..+|...|++++|...|++..+. .|+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 644567888999999999999999999999998875 4553
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.39 E-value=0.0027 Score=52.28 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCC-----------CHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWG------CHP-----------NETTFLVLIKSLYQAARVGEGDEMIDRMK 372 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p-----------~~~t~~~li~~~~~~~~~~~a~~~~~~m~ 372 (503)
...+......+.+.|++++|+..|.+..+.- -.| +...|..+..+|.+.|++++|...++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456666778888999999999998876530 011 11334444444444444444444444444
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 373 SAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 373 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
+.. +.+...|..+..+|...|++++|...|++..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 421 1123344444444444444444444444443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00057 Score=64.36 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042598 311 ETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL 390 (503)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 390 (503)
..|..+...|.+.|++++|+..|++..+. .|+...+ ...++.+++...+ . ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34666677788888999999988887664 3433211 1111111111111 0 12344455555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 391 CGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554331 22444555555555555555555555555443
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.38 E-value=0.0026 Score=51.76 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKTD-----GHNPD-SETY----DLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.|+.+-.++.+.|++++|+..+++..+. .+.|+ ...| ...-.++...|++++|+..|++.++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666666667777776666666542 12454 4567 88888999999999999999998764
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.37 E-value=0.0033 Score=59.86 Aligned_cols=119 Identities=8% Similarity=-0.051 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhc-------------CCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCC
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDY-------------GFK-RDKDSLRLVVEKLCENGYASYAEKLVKDTANEI 229 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-------------~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 229 (503)
..+..+...|.+.|++++|++.|++..+.. ... .+...|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 356777888889999999999998876510 011 245778889999999999999999999987755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 230 FPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 230 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
+.+...|..+..+|...|++++|++.|++..+.. .-+...+..+..++.+.++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999988752 2245566666655555544
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.33 E-value=0.00054 Score=67.83 Aligned_cols=109 Identities=11% Similarity=-0.097 Sum_probs=71.5
Q ss_pred HHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 042598 172 RLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDE 251 (503)
Q Consensus 172 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 251 (503)
.|.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++..+..+.+..+|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345667777777777777654 123467777777777778888888877777765444566777777777778888888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHH--HHhcCC
Q 042598 252 AKRLAREMYRGGFELGTVAYNCILDC--VSKLCR 283 (503)
Q Consensus 252 a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~ 283 (503)
|++.|++..+.. +-+...+..+..+ +.+.|+
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~ 125 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKA 125 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 888887776642 1122333334333 566666
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.24 E-value=0.0048 Score=50.20 Aligned_cols=95 Identities=14% Similarity=-0.068 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCC-------------HHhHHHHHHHHHhCCChhHHHHHHHHHhcC--
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRD-------------KDSLRLVVEKLCENGYASYAEKLVKDTANE-- 228 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 228 (503)
..+...-..+.+.|++++|+..|++..+. .|+ ...|+.+-.++.+.|++++|+..+++...-
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34556667788899999999999988764 343 238888899999999999999998876442
Q ss_pred ----CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 229 ----IFPD-DKIC----DLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 229 ----~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
+.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2454 4677 8889999999999999999998875
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.14 E-value=0.0014 Score=61.74 Aligned_cols=129 Identities=10% Similarity=-0.097 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHH------------------hHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKD------------------SLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~------------------~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
..+..+...+.+.|++++|+..|++.... .|+.. .|+.+..+|.+.|++++|+..+++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666667777888888877776643 34332 7788888889999999999999887
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Q 042598 226 ANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY 303 (503)
Q Consensus 226 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~ 303 (503)
....+.+...|..+..+|...|++++|...|++..+. .|+ ...+..+.....+... ..+.+.+.|..|..
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~------~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKA------LYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhC
Confidence 6644457788889999999999999999999987653 343 3333333333222111 13456666666654
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.09 E-value=0.028 Score=44.72 Aligned_cols=109 Identities=9% Similarity=-0.039 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCHhHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQ----AARVGEGDE 366 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~ 366 (503)
.++|.+.|....+.|. ++.. +-..|...+.+++|+++|++..+.| +...+..|-..|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 7889999999888773 3333 6667777788999999999998876 66788888888888 899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 042598 367 MIDRMKSAGYAIGKKDYYEFLTRLCG----IERIEQAMSVFEKMKTDG 410 (503)
Q Consensus 367 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 410 (503)
.|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999865 56777888888888 899999999999998876
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.02 E-value=0.0049 Score=47.18 Aligned_cols=80 Identities=10% Similarity=-0.125 Sum_probs=57.8
Q ss_pred hHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042598 180 TQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREM 259 (503)
Q Consensus 180 ~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 259 (503)
++|++.|++..+. .+.+...+..+...|...|++++|+..|++.....+.+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566667766642 23356777777788888888888888888775544455677788888888888888888888877
Q ss_pred HH
Q 042598 260 YR 261 (503)
Q Consensus 260 ~~ 261 (503)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0031 Score=47.68 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHh
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA 226 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 226 (503)
..+..+...+...|++++|++.|++..+. .+.+...|..+-.++.+.|++++|++.|++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 11234444444444555555555555554443
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.97 E-value=0.0071 Score=43.65 Aligned_cols=59 Identities=5% Similarity=0.045 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 165 TLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
.+..+...|...|++++|+..|++..+. .+.+...+..+..++.+.|++++|...|++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444555555555555555554432 1123344444444445555555555544444
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0076 Score=45.42 Aligned_cols=87 Identities=7% Similarity=-0.110 Sum_probs=68.9
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-------HHH
Q 042598 198 DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG-------TVA 270 (503)
Q Consensus 198 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~ 270 (503)
+...|..+-..+...|++++|++.|++.....+.+...|..+..++...|++++|++.+++..+. .|+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 45677888889999999999999999987655567888999999999999999999999999875 444 444
Q ss_pred HHHHHHHHHhcCCCCC
Q 042598 271 YNCILDCVSKLCRKKD 286 (503)
Q Consensus 271 ~~~li~~~~~~g~~~~ 286 (503)
+..+..++...|+...
T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhHhh
Confidence 5555556666665443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.0088 Score=43.11 Aligned_cols=82 Identities=11% Similarity=-0.007 Sum_probs=64.9
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 042598 198 DKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDC 277 (503)
Q Consensus 198 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 277 (503)
+...+..+...+...|++++|+..|++.....+.+...+..+...+...|++++|...+++..+.. +-+...+..+-.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 356778888899999999999999999866445577889999999999999999999999988753 2345566655555
Q ss_pred HHh
Q 042598 278 VSK 280 (503)
Q Consensus 278 ~~~ 280 (503)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.89 E-value=0.0065 Score=46.48 Aligned_cols=63 Identities=8% Similarity=0.026 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555555444321 22334444455555555555555555554443
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.74 E-value=0.12 Score=52.03 Aligned_cols=138 Identities=8% Similarity=-0.057 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-CHH
Q 042598 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR-RSE 327 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~ 327 (503)
++++++.++.+.+.. +-+..+|+.---.+.+.++. .++++.+.++.+.+... .|...|+.-...+.+.| .++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~-----~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP-----NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC-----CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc-----cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChH
Confidence 555555555555432 22334444444444444421 14556666665555432 35555655555555555 566
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--------------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 042598 328 DAIKLFYRMGEWGCHPNETTFLVLIKSLYQA--------------ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGI 393 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 393 (503)
++++.++++.+.... |...|+.....+.+. +.++++.+.++.+.... +-|...|+.+-..+.+.
T Consensus 162 ~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 162 EELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcC
Confidence 666666666655432 455555544444442 34566666666666532 22455566555555555
Q ss_pred CC
Q 042598 394 ER 395 (503)
Q Consensus 394 g~ 395 (503)
++
T Consensus 240 ~~ 241 (567)
T 1dce_A 240 EP 241 (567)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.71 E-value=0.0083 Score=44.68 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=49.8
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
.+...|..+...|.+.|++++|+..|++..+.+.. +...|..+..+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777888888888888888888888775422 456777788888888888888888887765
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.69 E-value=0.056 Score=54.50 Aligned_cols=172 Identities=7% Similarity=-0.114 Sum_probs=117.7
Q ss_pred hhHHHHHHHHhHHhcCCCC-CHHhHHHHHHHHHhCCC----------hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 042598 179 PTQVLGFFERMERDYGFKR-DKDSLRLVVEKLCENGY----------ASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG 247 (503)
Q Consensus 179 ~~~A~~~f~~m~~~~~~~~-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 247 (503)
.++|++.++.+.+. .| +...|+.--.++...|+ +++++++++.+...-+.+..+|+.--..+.+.|
T Consensus 45 ~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 45678888888764 34 34556654444555555 788888888887656667788888777777888
Q ss_pred --CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--
Q 042598 248 --KLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKI-- 323 (503)
Q Consensus 248 --~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-- 323 (503)
+++++++.++++.+.. .-+..+|+.-.-.+.+.|. ..+++.+.++.+.+... -|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~------~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAV------APAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCC------CHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcc
Confidence 6688888888888764 3356677666666666662 16788888887776553 4777787766665552
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHh
Q 042598 324 ------------RRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVG 362 (503)
Q Consensus 324 ------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 362 (503)
+.++++++.+++...... -|...|.-.-..+.+.+..+
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCcc
Confidence 557889999988877542 25677777666666666533
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.61 E-value=0.011 Score=43.88 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 345 ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 345 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
...+..+...+...|++++|...|+...+... -+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555555554321 123344445555555555555555555443
No 207
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.31 E-value=0.16 Score=39.35 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 042598 111 GRAILGFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERME 190 (503)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 190 (503)
.+++.++.....+ ..+..-||-+|--....-+-+.+.++++..|.-.|. ..+|+.......|-.+-
T Consensus 23 v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~~~n 88 (172)
T 1wy6_A 23 IDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVINN 88 (172)
T ss_dssp HHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHHHhc
Confidence 4455555555554 234555565555555555556666666666554343 23444444444444332
Q ss_pred HhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042598 191 RDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFE 265 (503)
Q Consensus 191 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 265 (503)
.+..-.+..++.+...|.-|.-.+++.++....+|+....-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 89 ------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 ------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 245556777888899999999999999976667788999999999999999999999999999999864
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.25 E-value=0.021 Score=46.36 Aligned_cols=100 Identities=14% Similarity=-0.062 Sum_probs=67.7
Q ss_pred HHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh----------hHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042598 174 VRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA----------SYAEKLVKDTANEIFPDDKICDLLIKGW 243 (503)
Q Consensus 174 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~p~~~~~~~li~~~ 243 (503)
.+.+.+++|++.++...+. -+.+...|+.+-.++.+.+++ ++|+..|++...--+-+..+|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3445667777777776653 123566666666666666553 4777777776553444567788888888
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 042598 244 CVD-----------GKLDEAKRLAREMYRGGFELGTVAYNCILDC 277 (503)
Q Consensus 244 ~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 277 (503)
... |++++|++.|++..+. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 766 4899999999998874 7777777665554
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.24 E-value=0.083 Score=49.30 Aligned_cols=144 Identities=8% Similarity=-0.108 Sum_probs=98.4
Q ss_pred CCChhhHHHHHHHHHc--cCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH---hC--CHhHH---HHHHHHHH
Q 042598 307 PRNVETFNVLISNLCK--IRR---SEDAIKLFYRMGEWGCHPN-ETTFLVLIKSLYQ---AA--RVGEG---DEMIDRMK 372 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~---~~--~~~~a---~~~~~~m~ 372 (503)
+.|...|...+.+... .+. ..+|..+|++..+. .|+ ...|..+..+|.- .+ .-... ...+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5677888888876543 333 57899999999885 455 3444433333321 11 11111 11222211
Q ss_pred Hc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcc
Q 042598 373 SA-GYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPK 451 (503)
Q Consensus 373 ~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 451 (503)
.. ....+..+|.++...+...|++++|...+++.... .|+...|..+-..+.-.|++++|.+.|++....+ |...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcC
Confidence 11 22557788888877777789999999999999986 4888888888889999999999999999998865 6666
Q ss_pred cccch
Q 042598 452 EYRVD 456 (503)
Q Consensus 452 ~~~~l 456 (503)
||...
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 76543
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.18 E-value=0.18 Score=53.15 Aligned_cols=154 Identities=12% Similarity=0.012 Sum_probs=87.7
Q ss_pred HHHhCCChhHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCC
Q 042598 208 KLCENGYASYAEK-LVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKD 286 (503)
Q Consensus 208 ~~~~~g~~~~a~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (503)
.....+++++|.+ ++..+. +......++..+.+.|.+++|+++.++-. .- .......|+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~-----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~--- 667 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE-----GKDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQ--- 667 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC-----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTC---
T ss_pred HHHHhCCHHHHHHHHHhcCC-----chHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCC---
Confidence 3345677777766 442221 12223666777777788877776653211 11 222344566
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHH
Q 042598 287 PFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDE 366 (503)
Q Consensus 287 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~ 366 (503)
+++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...+
T Consensus 668 ----~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 668 ----LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp ----HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ----HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 77777765433 4567888888888888888888888887643 2334444445666665555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 042598 367 MIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKM 406 (503)
Q Consensus 367 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 406 (503)
+-+.....|- ++....+|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5444444331 233334455555666665555443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.13 E-value=0.0056 Score=59.33 Aligned_cols=86 Identities=8% Similarity=-0.162 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHC---CCC---cC-HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh-------CCCCCChh
Q 042598 246 DGKLDEAKRLAREMYRG---GFE---LG-TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY-------NGVPRNVE 311 (503)
Q Consensus 246 ~g~~~~a~~~~~~m~~~---g~~---~~-~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~-------~g~~~~~~ 311 (503)
.|++++|+.++++..+. -+. |+ ..+++.|..+|...|+ +++|+.++++..+ ...+-...
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-------~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-------WEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 47889999998887642 122 22 4678899999999998 5666666655432 22223356
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
+++.+...|...|++++|+.+|++..+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 788899999999999999999887643
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.04 E-value=0.012 Score=57.08 Aligned_cols=93 Identities=11% Similarity=-0.054 Sum_probs=66.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCc----CHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh-------C
Q 042598 239 LIKGWCVDGKLDEAKRLAREMYRGG---FEL----GTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY-------N 304 (503)
Q Consensus 239 li~~~~~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~-------~ 304 (503)
.+..+.+.|++++|+.++++..+.. +.+ ...+++.+...|...|+ +++|+.++++... .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-------~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-------LEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHHhHHHHcCC
Confidence 3555667889999999999887531 122 24678888899999988 6666666655432 2
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 042598 305 GVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGE 338 (503)
Q Consensus 305 g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (503)
..+-...+++.+...|...|++++|+.+|++..+
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2223356788899999999999999999887643
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.98 E-value=0.033 Score=53.98 Aligned_cols=92 Identities=11% Similarity=-0.083 Sum_probs=57.4
Q ss_pred HHHHHHhCCHhHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 042598 352 IKSLYQAARVGEGDEMIDRMKSAG---YAIG----KKDYYEFLTRLCGIERIEQAMSVFEKMKTD-----G-HNPD-SET 417 (503)
Q Consensus 352 i~~~~~~~~~~~a~~~~~~m~~~g---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~ 417 (503)
+..+.+.|++++|..++++..+.. +.++ ..+++.+...|...|++++|+.++++..+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777766531 1111 246666777777777777777777755521 1 1222 245
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 418 YDLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788888888888887777654
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.94 E-value=0.03 Score=45.41 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH----------hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 042598 323 IRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARV----------GEGDEMIDRMKSAGYAI-GKKDYYEFLTRLC 391 (503)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~ 391 (503)
.+++++|+..+++..+.. .-+...|..+-.++...+++ ++|+..|++.++. .| +...|..+-.+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 344556666666555543 11445555555555554443 3555556555553 22 3345555555555
Q ss_pred cc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042598 392 GI-----------ERIEQAMSVFEKMKTDGHNPDSETYDLL 421 (503)
Q Consensus 392 ~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l 421 (503)
.. |++++|.+.|++..+. .|+...|...
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 44 3566666666666653 5555444333
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=0.28 Score=51.66 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=90.7
Q ss_pred hcCCChHHHHH-HHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHH
Q 042598 142 GRRKDFKAIHD-FLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEK 220 (503)
Q Consensus 142 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 220 (503)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-..+ .....+.|++++|.+
T Consensus 610 ~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~-------------f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISPDQDQK-------------FELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHHH-------------HHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCCCcchh-------------eehhhhcCCHHHHHH
Confidence 34677777776 44222 11333467777777788888877665332211 234456788888877
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 042598 221 LVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLD 300 (503)
Q Consensus 221 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~ 300 (503)
+.+.+ .+...|..+...+.+.|+++.|++.|..+.+ |..+...|...|+ .+...++-+.
T Consensus 674 ~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~-------~~~~~~~~~~ 732 (814)
T 3mkq_A 674 LLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN-------KEGLVTLAKD 732 (814)
T ss_dssp HHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC-------HHHHHHHHHH
T ss_pred HHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC-------HHHHHHHHHH
Confidence 76544 3566788888888888888888888887653 3334444444444 3444444433
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 301 MEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMG 337 (503)
Q Consensus 301 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (503)
....| -++.-..+|.+.|++++|+++|.++.
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 33322 23444555666777777777776654
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.71 E-value=0.0063 Score=58.98 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHh---C--C--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHH
Q 042598 291 DSEAEKVLLDMEY---N--G--VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW-----G-CHPN-ETTFLVLIKSLY 356 (503)
Q Consensus 291 ~~~a~~~~~~m~~---~--g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~-~~t~~~li~~~~ 356 (503)
+++|+.++++..+ . | .+....+++.+..+|...|++++|+.++++..+- | -.|+ ..+|+.|...|.
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 6778877776543 1 1 1122467888889999999999999998886532 2 1233 367888888888
Q ss_pred HhCCHhHHHHHHHHHHH
Q 042598 357 QAARVGEGDEMIDRMKS 373 (503)
Q Consensus 357 ~~~~~~~a~~~~~~m~~ 373 (503)
..|++++|..++++..+
T Consensus 394 ~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 394 GLENKAAGEKALKKAIA 410 (433)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH
Confidence 88888888888887765
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.68 E-value=0.26 Score=45.96 Aligned_cols=74 Identities=7% Similarity=-0.006 Sum_probs=46.8
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 042598 307 PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYY 384 (503)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 384 (503)
+.+..+|.++.-.+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+.+... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3455666666555555677777777777776654 5666666666666677777777777776666 345554443
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.26 E-value=0.78 Score=35.60 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=20.7
Q ss_pred cCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 176 AGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
.|.+++..++..+.... -+..-||.+|--....-+-+...++++.+
T Consensus 20 dG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~I 65 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKI 65 (172)
T ss_dssp TTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHH
Confidence 34444444444444432 33444444444444444444444444443
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.61 Score=38.35 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 309 NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388 (503)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 388 (503)
+...|..+-......|+++-|.+.|.+..+ |..+.--|...|+.+.-..+-+.....| -++....
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~ 97 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLL 97 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHH
Confidence 455566666666666666666655555432 1233333444555544444444333332 1333344
Q ss_pred HHHccCCHHHHHHHHHH
Q 042598 389 RLCGIERIEQAMSVFEK 405 (503)
Q Consensus 389 ~~~~~g~~~~A~~~~~~ 405 (503)
.+.-.|+++++.++|.+
T Consensus 98 ~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 98 NTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 45556666666666544
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.22 E-value=0.16 Score=37.00 Aligned_cols=56 Identities=5% Similarity=-0.001 Sum_probs=33.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHc
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNET-TFLVLIKSLYQAARVGEGDEMIDRMKSA 374 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~~~~~m~~~ 374 (503)
..+.+.|++++|+..|++..+.. .-+.. .+..+..++...|++++|.+.|+...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44556666667777666665542 11334 5566666666666666666666666653
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.19 E-value=0.9 Score=40.67 Aligned_cols=115 Identities=13% Similarity=-0.044 Sum_probs=77.0
Q ss_pred HHHHHHHH-HHHhc-CCCCCCCCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcc-----CCHHHHHHHHHHHHH
Q 042598 269 VAYNCILD-CVSKL-CRKKDPFRLDSEAEKVLLDMEYNGVPRN---VETFNVLISNLCKI-----RRSEDAIKLFYRMGE 338 (503)
Q Consensus 269 ~~~~~li~-~~~~~-g~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~ 338 (503)
..|..++. .+... .....+...+..|...+++..+.. |+ ...|..+...|.+. |+.++|.+.|++..+
T Consensus 155 L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 155 LYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 34444443 33332 222344455677777777776643 43 56888888888884 899999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHHh-CCHhHHHHHHHHHHHcCCC--CCHHHHHH
Q 042598 339 WGCHPNETTFLVLIKSLYQA-ARVGEGDEMIDRMKSAGYA--IGKKDYYE 385 (503)
Q Consensus 339 ~g~~p~~~t~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~--~~~~~~~~ 385 (503)
.+-.-+..++......++.. |+.+++.+.+++.+..... |+....+.
T Consensus 233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 53221367777777888774 8899999999999887655 66554443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.96 E-value=0.095 Score=38.29 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHcCChhHHHHHHHHhHHhcCCCCCHH-hHHHHHHHHHhCCChhHHHHHHHHHhc
Q 042598 171 DRLVRAGRPTQVLGFFERMERDYGFKRDKD-SLRLVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 171 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
..+.+.|++++|++.|++..+. .+.+.. .|..+-.+|...|++++|.+.|++...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455566666666666666543 122334 555555666666666666666665543
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.86 E-value=1.4 Score=36.28 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHH
Q 042598 199 KDSLRLVVEKLCENGYASYAEKLVKDT 225 (503)
Q Consensus 199 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 225 (503)
...|..|-......|+++-|++.|...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444443
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.27 E-value=0.37 Score=35.02 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 379 GKKDYYEFLTRLCGIER---IEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 379 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444444444433222 466666666665431 3344555555566666666666666666666554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.19 E-value=0.65 Score=37.14 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCHhHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIR---RSEDAIKLFYRMGEWGCHP--NETTFLVLIKSLYQAARVGEGD 365 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~ 365 (503)
+..+++-|.+....|. ++..+.-.+.-++++.+ +.++++.+|++..+.+ .| +...+-.+--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666665555443 45555556666667766 4557777777776653 23 2333444555667777777777
Q ss_pred HHHHHHHH
Q 042598 366 EMIDRMKS 373 (503)
Q Consensus 366 ~~~~~m~~ 373 (503)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777776
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.65 E-value=0.42 Score=35.49 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 380 KKDYYEFLTRLCGIERIEQAMSVFEKMKTDG------HNPDSETYDLLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
...+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|++++|..++++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344455555666666666666666544320 1233455666666777777777777777666653
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.61 E-value=0.92 Score=36.27 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC---CHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAA---RVGEGDEMIDRMKSAGYAI--GKKDYYEFLTRLCGIERIEQAM 400 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~ 400 (503)
...+.+-|.+..+.|. ++..+...+..++++.+ +++++..+++...+.. .| +...+..+--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666554 57777777777888877 6668888888888754 23 2445555666778888899998
Q ss_pred HHHHHHHhCCCCCC
Q 042598 401 SVFEKMKTDGHNPD 414 (503)
Q Consensus 401 ~~~~~m~~~g~~p~ 414 (503)
+.++.+.+. .|+
T Consensus 92 ~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 92 KYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHhc--CCC
Confidence 888888864 564
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.58 E-value=1.3 Score=39.70 Aligned_cols=110 Identities=9% Similarity=0.064 Sum_probs=76.9
Q ss_pred ChhhHHHHHH-HHHcc--CC------HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-----hCCHhHHHHHHHHH
Q 042598 309 NVETFNVLIS-NLCKI--RR------SEDAIKLFYRMGEWGCHPN---ETTFLVLIKSLYQ-----AARVGEGDEMIDRM 371 (503)
Q Consensus 309 ~~~~~~~li~-~~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~-----~~~~~~a~~~~~~m 371 (503)
....|..++. ++... |. ..+|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 3456666554 33332 33 45677777776663 565 5678888888888 49999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 042598 372 KSAGYAIGKKDYYEFLTRLCGI-ERIEQAMSVFEKMKTDGHN--PDSETYDL 420 (503)
Q Consensus 372 ~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~--p~~~~~~~ 420 (503)
++..-.-+..++....+.++.. |+.++|.+.+++....... |+....+.
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9853322467777888888884 9999999999999876544 55444443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.10 E-value=0.88 Score=33.65 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042598 233 DKICDLLIKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 233 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 261 (503)
...+..+..+|.+.|+++.|...+++..+
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555555555555555555555543
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.62 E-value=1.7 Score=31.44 Aligned_cols=63 Identities=13% Similarity=-0.060 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHh
Q 042598 162 GPKTLASCIDRLVRAGR---PTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTA 226 (503)
Q Consensus 162 ~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 226 (503)
|+..+..+..++...++ .++|..+|++..+. -+-++.....+-..+.+.|++++|+..++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444433322 34555555554432 11123344444444445555555555555443
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.61 E-value=1.3 Score=45.57 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=44.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEA 441 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 441 (503)
+-+...|+++.|+++-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455689999999999988765 2446789999999999999999999998886
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.88 E-value=2.1 Score=33.96 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
+++++|.++|+.+.+.+-.- ...|-....-=.+.|+.+.|.+++...+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 57777777777775432222 5566655555667777777777777777766543
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.24 E-value=3.5 Score=32.71 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHHcCCh------hHHHHHHHHhHHhcCCCCCHH-hHHHHHH------HHHhCCChhHHHHHHHHHh
Q 042598 160 VLGPKTLASCIDRLVRAGRP------TQVLGFFERMERDYGFKRDKD-SLRLVVE------KLCENGYASYAEKLVKDTA 226 (503)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~------~~A~~~f~~m~~~~~~~~~~~-~~~~ll~------~~~~~g~~~~a~~~~~~~~ 226 (503)
+.|.++|-..+...-+.|++ ++.+++|+.... .++|+.. .|..-|. .+...+++++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45788888888888888888 888888887776 4455431 1111111 1123488999999999885
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 042598 227 NEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILD 276 (503)
Q Consensus 227 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 276 (503)
+..+.=...|-....-=.+.|+++.|.+++......+-+|.. ...+.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~ 136 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALR 136 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHH
Confidence 421122667776677777899999999999999988755443 3444333
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.77 E-value=1.3 Score=42.13 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=60.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCccCcccccchH
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVR-----NGVEVKPKEYRVDP 457 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 457 (503)
...++..+...|+.++|...++.+... .+-+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|++.+-.+.-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345667778889999998888877754 255777899999999999999999999888654 48999888776654
Q ss_pred HHhcC
Q 042598 458 RYLKK 462 (503)
Q Consensus 458 ~~~~~ 462 (503)
..+..
T Consensus 253 ~il~~ 257 (388)
T 2ff4_A 253 RILRQ 257 (388)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 44443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.54 E-value=3.6 Score=31.61 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=41.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhcCChHHH
Q 042598 360 RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQ---AMSVFEKMKTDGHNP-DS-ETYDLLMTKWCAHNRVDKA 434 (503)
Q Consensus 360 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A 434 (503)
.+..+.+-|......|. ++..+-..+..++.+..+..+ ++.++++..+.+ .| +. ...-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444544444333 445554445555555554444 566666655432 12 11 2222344466666666666
Q ss_pred HHHHHHHHHC
Q 042598 435 NALFDEAVRN 444 (503)
Q Consensus 435 ~~~~~~m~~~ 444 (503)
.++++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666653
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.09 E-value=1.3 Score=32.25 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 042598 160 VLGPKTLASCIDRLVRAGRPTQVLGFFERMER 191 (503)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 191 (503)
.|++.+..+.+.+|-|.+++..|.++|+.++.
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.42 E-value=1.9 Score=33.08 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHH
Q 042598 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGE---GDEMIDRMKSAGYAI--GKKDYYEFLTRLCGIERIEQAMS 401 (503)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~ 401 (503)
..+.+-|.+....|. ++..+--.+..++.+..+... +..++..+.+.+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445554444443 555555556666666665554 666666666543 12 22334445556777777777777
Q ss_pred HHHHHHhC
Q 042598 402 VFEKMKTD 409 (503)
Q Consensus 402 ~~~~m~~~ 409 (503)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777754
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.28 E-value=1.7 Score=41.15 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHH
Q 042598 202 LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYR-----GGFELGTVA 270 (503)
Q Consensus 202 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 270 (503)
...++..+...|+.++|...+..+....+-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345667778899999999888888665667888999999999999999999999998764 488887664
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.08 E-value=3.3 Score=45.48 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=25.4
Q ss_pred ccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCHh-HHHHHHHHHHH
Q 042598 322 KIRRSEDAIKLFYRMGEWG--CHPNETTFLVLIKSLYQAARVG-EGDEMIDRMKS 373 (503)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~-~a~~~~~~m~~ 373 (503)
-.|..+++.+++..-.+.. ......-|..|-.-+...|++. .|.-+|+.+.+
T Consensus 995 f~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 995 MPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3566777777765433211 1111123444444445556655 45556666654
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.05 E-value=8.4 Score=42.29 Aligned_cols=50 Identities=8% Similarity=0.178 Sum_probs=30.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhH
Q 042598 312 TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGE 363 (503)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 363 (503)
.|..+.+++...|++++|...+-.+.....+ ......++..+|..|..+.
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 4666777777777777777777666554332 3455556666666555443
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.55 E-value=3.2e-05 Score=73.51 Aligned_cols=120 Identities=9% Similarity=-0.026 Sum_probs=79.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
-++.||-.+-.+|...+.+.-|.-.--.++- .| .....++..|-..|.+++-..+++.-... -.....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 5778899999999999888776555444432 22 22345677788899999888888776532 135678899998
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDE 440 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 440 (503)
-.|++- +.++.++-++..-. +.| ---+|.+|-+...|.++.-+|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 888885 34444443332221 111 12388999999999998877764
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.29 E-value=6 Score=28.84 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 326 SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388 (503)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 388 (503)
.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++++-++.+ +.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3345555666666677778888888888888888888888887777654 2223345655543
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.23 E-value=30 Score=34.85 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=65.2
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCC
Q 042598 116 GFNHWLTQNANFSHTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGF 195 (503)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 195 (503)
++-..+.+..+.+.....=+..+..+++.+++..+..++.. .+.+...-.....+....|+.++|......+-.. |
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~--~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~-~- 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-G- 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-S-
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-C-
Confidence 55556666455544444456667778888888888886654 2456777777778888889887777766666543 2
Q ss_pred CCCHHhHHHHHHHHHhCCChhH
Q 042598 196 KRDKDSLRLVVEKLCENGYASY 217 (503)
Q Consensus 196 ~~~~~~~~~ll~~~~~~g~~~~ 217 (503)
......++.++..+.+.|....
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCH
T ss_pred CCCcHHHHHHHHHHHHCCCCCH
Confidence 2345667778888877775543
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.14 E-value=25 Score=33.03 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=65.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 042598 315 VLISNLCKIRRSEDAIKLFYRMGEWGCHPN-----ETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAIGKKDYYEF- 386 (503)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~l- 386 (503)
-++..|...|++.+|..++.++.+.=-..| ...|..-+..|...+++.++...+...... .+.++......+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578889999999999999999876411112 245667778889999999999999887653 333444332221
Q ss_pred ---HHHHH-ccCCHHHHHHHHHHHH
Q 042598 387 ---LTRLC-GIERIEQAMSVFEKMK 407 (503)
Q Consensus 387 ---i~~~~-~~g~~~~A~~~~~~m~ 407 (503)
-..+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12244 6889999988877653
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.96 E-value=3.1 Score=32.10 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=28.1
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHH
Q 042598 158 KEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVV 206 (503)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll 206 (503)
...|++.+..+.+.+|-+.+|+..|.++|+.++.+ +.+...+|..++
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~l 129 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 129 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHH
Confidence 44566666666666666666666666666666653 223333455444
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.88 E-value=0.00076 Score=64.36 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhccC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHH
Q 042598 131 DETLSFFTDYFGRRKDFKAIHDFLVDNKE-VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKL 209 (503)
Q Consensus 131 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~ 209 (503)
+..|..++.++.+.|.+++...++.-... ..++.+=+.|+.+|++.++..+-.+++ . .||..-...+-+-|
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl----~----~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT----S----CCSSSCTHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH----c----CCCcccHHHHHHHH
Confidence 34445555555555555555554432211 223334445555555555544332111 1 24444444445555
Q ss_pred HhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCC
Q 042598 210 CENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFR 289 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~ 289 (503)
...|.++.|.-+|..+.+ |.-|-..+.+.|++..|.+.-++ .-++.||..+-.+|...+...
T Consensus 155 f~e~lYeAAKilys~isN--------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~Efr---- 216 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFR---- 216 (624)
T ss_dssp HHSCCSTTSSTTGGGSCC--------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTT----
T ss_pred HHccCHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHH----
Confidence 555555555444444332 22222333344555444432221 235678888888898887743
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHH
Q 042598 290 LDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMID 369 (503)
Q Consensus 290 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~ 369 (503)
-|.-.--.+. ........++.-|-..|.+++-+.+++.-... -....-.|+-|.-.|++- +.++..+-++
T Consensus 217 ---LAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 217 ---LAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp ---TTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred ---HHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 2222222222 12223345567789999999999999876532 234667777777666665 3454444443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 370 RMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 370 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
..-. .+ | .--+|++|.+..-|.++.-++....
T Consensus 287 lf~s-ri--N---ipKviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 287 LFWS-RV--N---IPKVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp TSSS-SS--C---CTTTHHHHTTTTCHHHHHHHHHHHT
T ss_pred HHHH-hc--c---HHHHHHHHHHHhhHHHHHHHHhcch
Confidence 3221 11 1 1235667777777777766665544
No 247
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=82.28 E-value=21 Score=29.82 Aligned_cols=111 Identities=14% Similarity=0.025 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHH
Q 042598 129 HTDETLSFFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEK 208 (503)
Q Consensus 129 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~ 208 (503)
++...-...+..+++.+.-+..-.++.... .+|..+-...+.++.+.|+.+....+.+.+ . .+|..+-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~----~~~~~vr~~a~~a 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALGQIGDERAVEPLIKAL-K----DEDGWVRQSAAVA 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH-c----CCCHHHHHHHHHH
Confidence 344444444444444444222222222222 245555555555555555433322222222 2 2455555555555
Q ss_pred HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 042598 209 LCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGK 248 (503)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 248 (503)
+++.|+.+....+.+.+.+ ++...-...+.++.+.|+
T Consensus 105 L~~~~~~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 105 LGQIGDERAVEPLIKALKD---EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHCCGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCC
Confidence 5555553332222222222 444444444555554444
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.22 E-value=10 Score=39.06 Aligned_cols=129 Identities=11% Similarity=0.042 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh-------CCC
Q 042598 235 ICDLLIKGWCVDGK-LDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY-------NGV 306 (503)
Q Consensus 235 ~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~-------~g~ 306 (503)
....++..+...|. .+.|..+++++.+..-..+......+|..+.+.++. --+|.+++.+..+ .-.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~------Ev~av~ll~~~l~~~~~~~~~l~ 323 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETK------ELDMITILNETLDPLLSLLNDLP 323 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGG------HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhhhhhhhc
Confidence 34456666666666 588999999988753222222333444444443321 1234444433321 111
Q ss_pred CCChh----------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 042598 307 PRNVE----------TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRM 371 (503)
Q Consensus 307 ~~~~~----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m 371 (503)
..+.. ....=...+...|+++-|+.+-++.... .|+ -.||..|..+|...|+++.|+-.+..+
T Consensus 324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11211 1111133456789999999999998774 555 589999999999999999999888876
No 249
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=82.17 E-value=32 Score=31.86 Aligned_cols=115 Identities=8% Similarity=-0.006 Sum_probs=63.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCccCcccccchHHH
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR--VDKANALFDEAVRNGVEVKPKEYRVDPRY 459 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 459 (503)
..+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+...|+-........+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888888889999999999888721111 12345556666665443 45677888888888765444333333333
Q ss_pred hcCch-hhhcccccccHHHHHHHHHHhhhhhhhccccCc
Q 042598 460 LKKPI-AVKKGKKRETLPEKMARKRRRLKQIRLSFVKKP 497 (503)
Q Consensus 460 ~~~~~-~~~~~~~~~~l~~~~~~~~~~l~ki~~~~~~~~ 497 (503)
+..-. ..-..=.+..++.+.+.+.-.-.-+-.+|+...
T Consensus 298 l~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~ 336 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 336 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTC
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 33211 112233444445555544444344444555444
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.10 E-value=37 Score=32.59 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcC---HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh----CC
Q 042598 235 ICDLLIKGWCVDGKLDEAKRLAREMYRG--GFELG---TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEY----NG 305 (503)
Q Consensus 235 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~----~g 305 (503)
....|...|...|++.+|..++.++... |.... ...+...+..|...++ +..|..++..... ..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d-------~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD-------YSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhhcccC
Confidence 4456778888889999999998887642 22111 3466777788888887 7788877776532 22
Q ss_pred CCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHHHhCCHhHHHHHHHHHHHcCCCC
Q 042598 306 VPRN--VETFNVLISNLCKIRRSEDAIKLFYRMGEW-GCHPNETTFLV----LIKSLYQAARVGEGDEMIDRMKSAGYAI 378 (503)
Q Consensus 306 ~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~~ 378 (503)
..|+ ...|..++..+...+++.+|...|.+..+. .+.-|...+.. ++.+..-.+..+.-..+.....+....+
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~ 291 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLK 291 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccccc
Confidence 2222 345677788888899999999888887542 12223322222 2222222222233333344333333345
Q ss_pred CHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhCC-C----CCCHHHHHHHHHHHHhc----------------------C
Q 042598 379 GKKDYYEFLTRLCGI--ERIEQAMSVFEKMKTDG-H----NPDSETYDLLMTKWCAH----------------------N 429 (503)
Q Consensus 379 ~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g-~----~p~~~~~~~li~~~~~~----------------------g 429 (503)
+...|..++.+|... .+++.+.+.|+...... + ..+...|..|......+ =
T Consensus 292 ~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l 371 (445)
T 4b4t_P 292 KLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDL 371 (445)
T ss_dssp HHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCc
Confidence 677889999998764 46777777666543221 1 01122343333322211 2
Q ss_pred ChHHHHHHHHHHHHCC
Q 042598 430 RVDKANALFDEAVRNG 445 (503)
Q Consensus 430 ~~~~A~~~~~~m~~~g 445 (503)
..++++..+.+|...|
T Consensus 372 ~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 372 TESQTETYISDLVNQG 387 (445)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4678888999998776
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.70 E-value=14 Score=28.51 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042598 328 DAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLT 388 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 388 (503)
+..+-++.+...++.|+.......+.+|-+.+++..|.++++-++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555566666678888888888888888888888888888877664 2333445665544
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.61 E-value=40 Score=30.81 Aligned_cols=81 Identities=10% Similarity=0.017 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042598 308 RNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFL 387 (503)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 387 (503)
-|......+-..|.+.+++.+|...|- .|..+...+|..++.-+...+...++ +...-. .|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaR-aV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCAR-AV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHH-HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHH-HH
Confidence 455666777888999999999988873 24444447777777666555432211 122222 23
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 042598 388 TRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~ 407 (503)
-.|.-.+++..|..+|+...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33455567777777665544
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.47 E-value=26 Score=33.47 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCHhHHHH
Q 042598 291 DSEAEKVLLDMEYNG-VPR-NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP--NETTFLVLIKSLYQAARVGEGDE 366 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~ 366 (503)
+++..+......+.. ... -..++..+...|.+.|++++|.+.|.++...-..+ -...+-.+|..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 455555555554422 122 22367788999999999999999999998763322 34677788999999999999999
Q ss_pred HHHHHHHc---CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 367 MIDRMKSA---GYAIGKK----DYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 367 ~~~~m~~~---g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
.+.++... +-.++.. .|..+ .+...+++..|.+.|-+...
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHH--HHHHhChHHHHHHHHHHHhc
Confidence 99988653 3223322 12222 23457899999998887654
No 254
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.94 E-value=33 Score=28.51 Aligned_cols=112 Identities=11% Similarity=-0.004 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHH
Q 042598 160 VLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLL 239 (503)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~l 239 (503)
.++..+-...+..+.+.|..+....+.+.+. .+|...-...+.++++.|+.+....+.+.+.+ +|...-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~---~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDERAVEPLIKALKD---EDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC---SSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC---CCHHHHHHH
Confidence 3566666666666666666433333333332 24665555666666666654433333333332 555555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCR 283 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 283 (503)
+.++.+.|+.+.. ..+.++.+ .++..+-...+.++++.|.
T Consensus 102 ~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 102 AVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 6666666654322 22223332 3455555555555555544
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.37 E-value=43 Score=31.93 Aligned_cols=98 Identities=8% Similarity=-0.058 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHh-cCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhc--CCCCCHHHHHHH-
Q 042598 164 KTLASCIDRLVRAGRPTQVLGFFERMERD-YGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTAN--EIFPDDKICDLL- 239 (503)
Q Consensus 164 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~p~~~~~~~l- 239 (503)
.+...+...|.+.|+.+.|.+.|.++... .+...-...+-.+|..+...+++..+...+.+... .-.+|....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36677889999999999999999999874 12233356778888999999999999999988743 112333222211
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHH
Q 042598 240 ---IKGWCVDGKLDEAKRLAREMYR 261 (503)
Q Consensus 240 ---i~~~~~~g~~~~a~~~~~~m~~ 261 (503)
.-.+...+++..|-+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1123346888888888877654
No 256
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.22 E-value=7 Score=34.43 Aligned_cols=122 Identities=8% Similarity=0.028 Sum_probs=56.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHH
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEWGCHPNE---TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKD--YYEFLTRLC 391 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 391 (503)
+...+..|+.+-+..+++. .|..++. ...+.+. ..+..+..+...++.+.+.+.|..++... -.+.+...+
T Consensus 152 L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 3334455665544433332 1433332 2223333 33455665556677777777776654321 122334445
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDS---ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (503)
+.|+.+-+..+++. .|..++. .-.+ .+...++.|+.+ +.+.+.+.|..++.
T Consensus 228 ~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t-~l~~A~~~~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 228 EKKHLGLVQRLLEQ---EHIEINDTDSDGKT-ALLLAVELKLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp HTTCHHHHHHHHHS---SSCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHHSSCSCC
T ss_pred HcCCHHHHHHHHhc---cCCCccccCCCCCc-HHHHHHHcCcHH----HHHHHHHcCCCCCc
Confidence 56666655544431 3333322 1122 223334455543 33445556665554
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.25 E-value=19 Score=27.82 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 328 DAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
+++.+++++.+.+..-....+--+.-++.+.|++++|.++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555554433111123333344455555555555555555555
No 258
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.95 E-value=9.6 Score=32.56 Aligned_cols=186 Identities=16% Similarity=0.091 Sum_probs=83.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH---HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCh---hhH
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGFELGTV---AYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV---ETF 313 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~ 313 (503)
+...+..|+.+.+..+++.+.+.|..++.. -.+. +...+..|+ .+ +++.+.+.|..++. ..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~-------~~----~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTL-------PS----VVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTC-------HH----HHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCC-------HH----HHHHHHHcCCCccccCCCCC
Confidence 344455677777666666666555443321 1222 223333344 22 23333344443332 222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHH---HHHHH
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHP---NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKD---YYEFL 387 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li 387 (503)
+. +...+..|+.+-+..+++.....++.+ |....+.+ ...+..|+.+ +++.+.+.|..++... ....+
T Consensus 81 t~-l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L 154 (241)
T 1k1a_A 81 TA-AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPL 154 (241)
T ss_dssp CH-HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred CH-HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHH
Confidence 22 333455666665555544432111122 22222223 3334556544 4445555555544321 22333
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcc
Q 042598 388 TRLCGIERIEQAMSVFEKMKTDGHNPDSET--YDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPK 451 (503)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 451 (503)
...+..|+.+-+..+ .+.|..++... -.+.+...+..|+.+ +++.+.+.|..++..
T Consensus 155 ~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 155 IHAVENNSLSMVQLL----LQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSLK 212 (241)
T ss_dssp HHHHHTTCHHHHHHH----HHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTCC
T ss_pred HHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCCCc
Confidence 444566776544444 44455443321 122334445566655 445556677766543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=72.71 E-value=36 Score=27.43 Aligned_cols=57 Identities=7% Similarity=0.023 Sum_probs=40.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEW-GCHPNE-------TTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
+..+...|.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++.++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 56677788888888877765432 123331 3556677888899999999999998755
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.06 E-value=33 Score=26.80 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=9.8
Q ss_pred HHHHHhCCHhHHHHHHHHHHH
Q 042598 353 KSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~m~~ 373 (503)
-++.+.|++++|.++.+.+++
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444444
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.77 E-value=12 Score=32.93 Aligned_cols=92 Identities=4% Similarity=0.001 Sum_probs=46.6
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHH
Q 042598 351 LIKSLYQAARVGEGDEMIDRMKSA-GYAIGK---KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSET--YDLLMTK 424 (503)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~ 424 (503)
.+...+..|+.+-... +.+. |..++. ...+.+.. .+..|+.....++++.+.+.|..++... -.+.+..
T Consensus 151 ~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKI----LLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHH----HHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 3444456677654444 4443 444332 22233333 3445555555667777777776655421 1234444
Q ss_pred HHhcCChHHHHHHHHHHHH-CCCccCcc
Q 042598 425 WCAHNRVDKANALFDEAVR-NGVEVKPK 451 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~~-~g~~p~~~ 451 (503)
.++.|+.+-+. .+.+ .|..++..
T Consensus 226 A~~~~~~~~v~----~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 226 AVEKKHLGLVQ----RLLEQEHIEINDT 249 (285)
T ss_dssp HHHTTCHHHHH----HHHHSSSCCTTCC
T ss_pred HHHcCCHHHHH----HHHhccCCCcccc
Confidence 55667765544 4444 56555543
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.39 E-value=73 Score=30.47 Aligned_cols=96 Identities=5% Similarity=-0.033 Sum_probs=72.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHhCCHhHHHHHHHHHHHc----CCCCC--HH
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEW--GCHPN---ETTFLVLIKSLYQAARVGEGDEMIDRMKSA----GYAIG--KK 381 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~--~~ 381 (503)
...+...|...|++.+|.+++.++..+ |.... ...|...+..|...+++..|..++..+... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345778899999999999999998654 32222 256777889999999999999999987532 22222 24
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 042598 382 DYYEFLTRLCGIERIEQAMSVFEKMKT 408 (503)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 408 (503)
.|...+..+...+++.+|.+.|.+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 577788888889999999988887753
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.88 E-value=1.2e+02 Score=32.23 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChHHHHHHHHhccCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCC
Q 042598 136 FFTDYFGRRKDFKAIHDFLVDNKEVLGPKTLASCIDRLV--RAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENG 213 (503)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g 213 (503)
.+-..+.-.|+-+.+..++.......+..+...+.-+++ -.|+.+.+..+.+.+.....-..--..-.++.-+|+..|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Q ss_pred ChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHH
Q 042598 214 YASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSE 293 (503)
Q Consensus 214 ~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~ 293 (503)
+.....+++..+.+....++.....+--++...|+.+.+.++++.+.+.+ .|.+.--.++.-+....|.. ..+
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~------~~~ 647 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKG------LQS 647 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSC------CHH
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCC------cHH
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccC---------CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhC
Q 042598 294 AEKVLLDMEYNGVPRNVETFNVLISNLCKIR---------RSEDAIKLFYRMGEW-GCHPNETTFLVLIKSLYQAA 359 (503)
Q Consensus 294 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---------~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~ 359 (503)
+.+++..+.. .+|..+-..-+.+++.-| ++...++.+...... .-.++...-..+..+....|
T Consensus 648 aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 648 AIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.67 E-value=45 Score=27.35 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~ 215 (503)
++..+-...+.++.+.|+.+....+.+.+ . .++...-...+.++.+.|+.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l-~----d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKAL-K----DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHH-c----CCCHHHHHHHHHHHHHhCcH
Confidence 34444444444445444433222222222 1 24444444445555554443
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.61 E-value=27 Score=25.37 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
.++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||.+.|..+-. .+.|..+++..-+..
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 5677777666666432 2222222234566777777777766544 3677777765543 466666666666655
Q ss_pred HHHcC
Q 042598 371 MKSAG 375 (503)
Q Consensus 371 m~~~g 375 (503)
+..+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 55544
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.55 E-value=36 Score=26.21 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCH---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 042598 340 GCHPNETTFLVLIKSLYQAARV---GEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTD 409 (503)
Q Consensus 340 g~~p~~~t~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 409 (503)
+-.|+..|--....++.+..+. .++..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3345555544455555555543 356666666665442122344445556666777777777777766653
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.39 E-value=31 Score=28.83 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 042598 361 VGEGDEMIDRMKSAGYAIGK-KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNP 413 (503)
Q Consensus 361 ~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 413 (503)
..+..++|..|...|+.-.. ..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55666677766666554332 445556666666667777777766666655555
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.02 E-value=46 Score=26.79 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042598 233 DKICDLLIKGWCVDGKLDEAKRLAREMY 260 (503)
Q Consensus 233 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 260 (503)
...---+-.+|.+.|++++|+.+++.+.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444457778889999999999987643
No 269
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=67.96 E-value=7.3 Score=33.21 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=5.3
Q ss_pred HHhCCChhHHHHH
Q 042598 209 LCENGYASYAEKL 221 (503)
Q Consensus 209 ~~~~g~~~~a~~~ 221 (503)
.+..|+.+-+..+
T Consensus 49 A~~~~~~~~v~~L 61 (240)
T 3eu9_A 49 AAINNRIDLVKYY 61 (240)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 3444444433333
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.64 E-value=71 Score=28.84 Aligned_cols=166 Identities=11% Similarity=-0.025 Sum_probs=90.8
Q ss_pred HHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 042598 207 EKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEA----KRLAREMYRGGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 282 (503)
.-|.+.+++++|++++..-. ..+.+.|+...| .-+.+-+.+.++++|......++..+....
T Consensus 41 ~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 41 NRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 33666777777766654321 122334554333 334555566777777777777777766643
Q ss_pred CCCCCCCcHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 042598 283 RKKDPFRLDSEAEKVLLDMEYNGV--PRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQA-- 358 (503)
Q Consensus 283 ~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-- 358 (503)
.... ....-..+......+.|- .-|......+...|.+.|++.+|...|-. |..-|...+..++.-+...
T Consensus 107 ~~~~--~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 107 PSEP--NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp TTCT--THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCc--hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcC
Confidence 3211 011122222222223221 24667788888999999999999887752 1111456777776665554
Q ss_pred -CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 359 -ARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 359 -~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
|...++-- .. ...+-.|.-.|++..|..+|+...
T Consensus 181 ~~~~~e~dl--------------f~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVAE--------------FF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHHH--------------HH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHHH--------------HH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 43333211 11 112233445678888888877654
No 271
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=66.89 E-value=20 Score=31.77 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=19.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCcccccc
Q 042598 403 FEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKEYRV 455 (503)
Q Consensus 403 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 455 (503)
.+.+.+.|..++...... +..|+.+-+ +.+.+.|..++...|..
T Consensus 211 v~~Ll~~gad~~~~~~~a-----~~~~~~~iv----~~Ll~~g~~~~~~~~~~ 254 (285)
T 3kea_A 211 LQALFKYDINIYSANLEN-----VLLDDAEIA----KMIIEKHVEYKSDSYTK 254 (285)
T ss_dssp HHHHTTSCBCSTTTTGGG-----GTTTCHHHH----HHHHHHHHHHTTCTTTT
T ss_pred HHHHHHcCCCCCCCChhh-----hhcCCHHHH----HHHHHcCCCCCCccccc
Confidence 334445555555443211 335554433 34444455555555543
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.85 E-value=26 Score=25.40 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 042598 291 DSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDR 370 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~ 370 (503)
.++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||.+.|..+-. .+.|..+++..-+..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 5677777666666432 2222222234566777777777665544 4677777765543 466766666666656
Q ss_pred HHHcC
Q 042598 371 MKSAG 375 (503)
Q Consensus 371 m~~~g 375 (503)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 65544
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.32 E-value=32 Score=25.02 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=23.3
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 390 LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555544433 455555544433 23444444444444444433
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.59 E-value=60 Score=26.56 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHH
Q 042598 161 LGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLI 240 (503)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li 240 (503)
+|..+-...+..+.+.|..+....+.+.+. .+|...-...+.++++.|..+....+.+.+.. ++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~-----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d---~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALK-----DEDAWVRRAAADALGQIGDERAVEPLIKALKD---EDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHc-----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC---CCHHHHHHHH
Confidence 455555555666666665444444443332 24555555666666666665444344443333 5666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 042598 241 KGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNL 320 (503)
Q Consensus 241 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 320 (503)
.++.+.|+.+....+ ..+.. .++..+-...+.++++.+. .++...+..+.. .+|..+-...+.++
T Consensus 98 ~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~---d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 98 VALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGD--------ERAVEPLIKALK---DEDGWVRQSAADAL 162 (201)
T ss_dssp HHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTC--------GGGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 666666664333333 22322 3455555555566665554 123333333332 13444444455555
Q ss_pred HccCCHHHHHHHHHHHH
Q 042598 321 CKIRRSEDAIKLFYRMG 337 (503)
Q Consensus 321 ~~~g~~~~A~~l~~~m~ 337 (503)
.+.|. .++...+.++.
T Consensus 163 ~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 163 GEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHCS-HHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHH
Confidence 55544 23444444443
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.53 E-value=98 Score=29.01 Aligned_cols=291 Identities=9% Similarity=-0.002 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhccC----C---CCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHHhcCCCCCHHhH-
Q 042598 132 ETLSFFTDYFGRRKDFKAIHDFLVDNKE----V---LGPKTLASCIDRLVRAGR-PTQVLGFFERMERDYGFKRDKDSL- 202 (503)
Q Consensus 132 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~---~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~~~~~~~~~~~- 202 (503)
.+...+...|.+.|+.++..+++..... . ........+|+.+....+ .+.-.++..+..+.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--HHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4556677888999999999999876532 1 234566788888876543 333334433333210 0111222
Q ss_pred -----HHHHHHHHhCCChhHHHHHHHHHhcCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHH
Q 042598 203 -----RLVVEKLCENGYASYAEKLVKDTANEIF-PD-----DKICDLLIKGWCVDGKLDEAKRLAREMYRG--GFELGTV 269 (503)
Q Consensus 203 -----~~ll~~~~~~g~~~~a~~~~~~~~~~~~-p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~ 269 (503)
.-+...|...|++.+|.+++.++.+.+. .| ...|..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 3578899999999999999998854211 11 245667788899999999999999887642 2223433
Q ss_pred HHHHHHHHH---H---hcCCCCCCCCcHHHHHHHHHHHHh----CCCC--CChhhHHHHHHHHHccCCHHHHHHHHH-HH
Q 042598 270 AYNCILDCV---S---KLCRKKDPFRLDSEAEKVLLDMEY----NGVP--RNVETFNVLISNLCKIRRSEDAIKLFY-RM 336 (503)
Q Consensus 270 ~~~~li~~~---~---~~g~~~~~~~~~~~a~~~~~~m~~----~g~~--~~~~~~~~li~~~~~~g~~~~A~~l~~-~m 336 (503)
+.. .++.| . ..++ +..|...|-+..+ .|.+ .+...|.. +.+..... ..+.-.++. +.
T Consensus 178 i~a-~i~~~~Gi~~l~~~rd-------yk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl~~~-r~el~~~l~~~~ 247 (394)
T 3txn_A 178 VQG-ALDLQSGILHAADERD-------FKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIMLGQ-SDDVNQLVSGKL 247 (394)
T ss_dssp HHH-HHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHTTC-GGGHHHHHHSHH
T ss_pred HHH-HHHHHhhHHHHHhccC-------HHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHcCC-HHHHHHHhcccc
Confidence 322 22222 1 2333 6777766655431 1111 12223322 33333323 222222221 21
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 042598 337 GEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE 416 (503)
Q Consensus 337 ~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 416 (503)
...-..|....+..++.++ ..+++.+...+++.... .+..|......+-..+-+ -.+ ..+.++.+ +-...
T Consensus 248 ~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~--Ir~---~~L~~i~~---pYsrI 317 (394)
T 3txn_A 248 AITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT--MLE---QNLCRIIE---PYSRV 317 (394)
T ss_dssp HHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH--HHH---HHHHHHHT---TCSEE
T ss_pred ccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH--HHH---HHHHHHhH---hhcee
Confidence 1111345666666676664 66677776666665433 344455432211111110 001 11112221 22445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 042598 417 TYDLLMTKWCAHNRVDKANALFDEAVRNGV 446 (503)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 446 (503)
++..+...+.- ..++++..+-+|+..|.
T Consensus 318 sl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 318 QVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp EHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred eHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 56666666544 67899999999998873
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.31 E-value=16 Score=32.52 Aligned_cols=121 Identities=3% Similarity=-0.056 Sum_probs=58.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 042598 319 NLCKIRRSEDAIKLFYRMGEWGCHPNET---TFLVLIKSLYQAARVGEGDEMIDRMKSAGYAI-GKKDYYEFLTRLCGIE 394 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g 394 (503)
..+..|+.+-+.-++ +.|..++.. -+.+.+...+..|+.+- .+.+.+.|..+ +...-.+.+...+..|
T Consensus 101 ~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g 172 (285)
T 3kea_A 101 YAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNG 172 (285)
T ss_dssp HHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcC
Confidence 334556655444333 334444332 22334445556676553 44444444433 2212334445556778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCccc
Q 042598 395 RIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKE 452 (503)
Q Consensus 395 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 452 (503)
+.+-+..+++.-..-.. .|..-++..+...+..|+. ++.+.+.+.|..++...
T Consensus 173 ~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 173 HVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp CHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred hHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 88777766665433211 1111122223333455664 44556677787776654
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.67 E-value=65 Score=26.87 Aligned_cols=56 Identities=13% Similarity=-0.021 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCC
Q 042598 324 RRSEDAIKLFYRMGEWGCHPN-ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIG 379 (503)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 379 (503)
+...++.++|..|...||--. ..-|..-...+...|++.+|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345577777777766655433 34455555666667777777777777766665553
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.45 E-value=31 Score=25.03 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=25.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 042598 390 LCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445556666555544433 555555554433 34555555555554555444
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.10 E-value=48 Score=25.36 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCc
Q 042598 202 LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGK--LDEAKRLAREMYRGGFEL 266 (503)
Q Consensus 202 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~ 266 (503)
.+.++.-|...|+.++|.+.++++.....-...+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34566667777777777777777754211223444455555555432 456677777777666443
No 280
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=59.14 E-value=1.8e+02 Score=30.87 Aligned_cols=164 Identities=6% Similarity=-0.060 Sum_probs=95.3
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 042598 272 NCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG----VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETT 347 (503)
Q Consensus 272 ~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (503)
..++...|+.|.. .-+++|.+.|+.....+ ++||.. +.+...-.+.|..++-..+++...... +..-
T Consensus 690 ~~~l~~ac~~g~~----~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~e 760 (909)
T 4fke_A 690 INAISTACSNGLP----QCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNE 760 (909)
T ss_dssp HHHHHHHHHTTCH----HHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHH
T ss_pred HHHHHHHHHhccH----HHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHH
Confidence 4566667776652 22567888888776532 445543 334444456677777677777776643 3444
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHH
Q 042598 348 FLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG-IERIEQAMSVFEKMKT---DGHNPDSETYDLLMT 423 (503)
Q Consensus 348 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~ 423 (503)
-..++.+++...+.+...++++.+............. ++.+... ....+.|++++.+--+ ..+..+...+..+|.
T Consensus 761 k~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~ 839 (909)
T 4fke_A 761 ADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQ 839 (909)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 5668888888888888888887776543222222333 3333333 2334566666654221 112234445777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCC
Q 042598 424 KWCAHNRVDKANALFDEAVRNG 445 (503)
Q Consensus 424 ~~~~~g~~~~A~~~~~~m~~~g 445 (503)
+.+..-..++-++-++...+..
T Consensus 840 ~~~~~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 840 GVTRRFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHhhC
Confidence 8777666666666666665543
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.79 E-value=33 Score=30.16 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=43.8
Q ss_pred HHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042598 207 EKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRG 262 (503)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 262 (503)
....+.|++++|++....-.+.-+-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888877776666677788888888888899999988888877763
No 282
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=57.57 E-value=1.2e+02 Score=28.06 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhH
Q 042598 166 LASCIDRLVRAGRPTQVLGFFERME 190 (503)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~f~~m~ 190 (503)
...+|.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4566777777777777777777765
No 283
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=57.09 E-value=55 Score=29.56 Aligned_cols=103 Identities=11% Similarity=0.073 Sum_probs=50.9
Q ss_pred HHHHHHHcCCCCCH---HHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHH
Q 042598 332 LFYRMGEWGCHPNE---TTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGK---KDYYEFLTRLCGIERIEQAMSVFEK 405 (503)
Q Consensus 332 l~~~m~~~g~~p~~---~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~ 405 (503)
+.+.+.+.|..++. .-.+ .+...+..|..+....++.. .|..++. .-.+.|.. -++.|+.+- .+.
T Consensus 221 i~~lLl~~gad~n~~d~~g~t-~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~i----v~~ 291 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKT-PLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKKI----AEL 291 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCC-HHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHHH----HHH
T ss_pred HHHHHHHCCCCCCCcCCCCCC-HHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHHH----HHH
Confidence 44445566665543 2222 34445667777655544321 2433322 22233332 345566543 344
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCc
Q 042598 406 MKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKP 450 (503)
Q Consensus 406 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 450 (503)
+.+.|..+|..+ .+..-++.|+.+ +.+.+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 556777776543 333344566654 45667778876664
No 284
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.00 E-value=68 Score=25.06 Aligned_cols=71 Identities=7% Similarity=0.054 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHhCCH---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 042598 342 HPNETTFLVLIKSLYQAARV---GEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD 414 (503)
Q Consensus 342 ~p~~~t~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (503)
.|+..|--....++.+..+. .++..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 45666655566666666544 467777777776543223344555666788888888888888888775 564
No 285
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.37 E-value=45 Score=29.34 Aligned_cols=116 Identities=10% Similarity=0.048 Sum_probs=75.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCC
Q 042598 318 SNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG--YAIGKKDYYEFLTRLCGIER 395 (503)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~ 395 (503)
....+.|.+++|++....-++.. +-|...-..++.-+|-.|+++.|.+-++...+.. ..+...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 45667899999999998877764 3477777788999999999999999999887742 11223344444433
Q ss_pred HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCChHHHHHHHHHHHHC
Q 042598 396 IEQAMSVFEKMKTDGHNP-----DSETYDLLMTKWC--AHNRVDKANALFDEAVRN 444 (503)
Q Consensus 396 ~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 444 (503)
+..=.+...-+-.| ...-...|+.+.. ..|+.++|.++-.+..+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333322222 2223344555544 469999999998888664
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.28 E-value=1.2e+02 Score=27.24 Aligned_cols=150 Identities=9% Similarity=-0.007 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH----HHHHHHcCCCCCHHH
Q 042598 272 NCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKL----FYRMGEWGCHPNETT 347 (503)
Q Consensus 272 ~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t 347 (503)
.++..-|.+.++ +++|.+++..-- ..+.+.|+...|-++ .+...+.++.+|...
T Consensus 37 Rtl~~Ry~~~~~-------~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~ 94 (312)
T 2wpv_A 37 RTIANRYVRSKS-------YEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDIS 94 (312)
T ss_dssp HHHHHHHHHTTC-------HHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHhcC-------HHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 344445556555 667766654322 223445665554443 444455577777777
Q ss_pred HHHHHHHHHHhCCHh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH----------------
Q 042598 348 FLVLIKSLYQAARVG-EGDEMIDRMKS----AG--YAIGKKDYYEFLTRLCGIERIEQAMSVFE---------------- 404 (503)
Q Consensus 348 ~~~li~~~~~~~~~~-~a~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~---------------- 404 (503)
...++..+.....-+ .=.++.+.+++ .| -.-+......+...|.+.|++.+|..-|-
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 777776655432211 12334444433 22 12356677777777888888777776431
Q ss_pred HHHhC--CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 405 KMKTD--GHNPDSETY-DLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 405 ~m~~~--g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+.+. |.+-+...| .-.+--|.-.|+...|..+++...+
T Consensus 175 w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11121 221112222 2223345567899999999887753
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.12 E-value=80 Score=24.97 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 398 QAMSVFEKMKTDGHNPD-SETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 398 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
++.++|..|..+|+--. ..-|......+...|++++|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36667777776655433 3445666666667777777777777766666555
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.10 E-value=2e+02 Score=30.60 Aligned_cols=107 Identities=10% Similarity=-0.015 Sum_probs=67.0
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCC----------------
Q 042598 169 CIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPD---------------- 232 (503)
Q Consensus 169 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~---------------- 232 (503)
++..+...|..+-|.++...+. .+...--.+-.+|...|++++|..+|++...++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5566666777776665444333 344444556677888899999999998765443211
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhc
Q 042598 233 -------DKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGT----VAYNCILDCVSKL 281 (503)
Q Consensus 233 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~ 281 (503)
..-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.+.++.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 125677888888888888888887777754222222 2455555554443
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.32 E-value=90 Score=25.04 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 042598 399 AMSVFEKMKTDGHNPDS-ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEVK 449 (503)
Q Consensus 399 A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 449 (503)
+.++|..|..+|+--.. .-|......+-..|++.+|.++|+.-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 55566666666543333 3455555556666667777666666666665553
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.18 E-value=42 Score=26.57 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 042598 202 LRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGK--LDEAKRLAREMYRGGFE 265 (503)
Q Consensus 202 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 265 (503)
.+.+|.-|...|+.++|.+.++++.....-...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566667777777777777777654211223344445555554322 44566677777666543
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.18 E-value=50 Score=27.85 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=8.9
Q ss_pred HHHcCChhHHHHHHHHhH
Q 042598 173 LVRAGRPTQVLGFFERME 190 (503)
Q Consensus 173 ~~~~g~~~~A~~~f~~m~ 190 (503)
.++.|+.+.+..+++.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 344555555555554443
No 292
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=48.19 E-value=47 Score=27.14 Aligned_cols=129 Identities=11% Similarity=0.096 Sum_probs=70.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHH-cc
Q 042598 320 LCKIRRSEDAIKLFYRMGEWGCHP-N-ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK---DYYEFLTRLC-GI 393 (503)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~-~~ 393 (503)
.++.|+.+....++.. ++.- + ..-. +.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3566887776555543 2211 1 1122 34444456666666677888888888766542 2233333222 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCh-HHHHHHHHHHHH-CCCccCcccc
Q 042598 394 ERIEQAMSVFEKMKTDGHNPDSET---YDLLMTKWCAHNRV-DKANALFDEAVR-NGVEVKPKEY 453 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~-~~A~~~~~~m~~-~g~~p~~~~~ 453 (503)
.+.....++.+.+.+.|..+|... .++.+...+..|.. ..-..+++.+.+ .|..++....
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~ 152 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC
Confidence 345555677777788887665432 21333333333433 345667777888 7877766544
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.91 E-value=96 Score=24.87 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 042598 293 EAEKVLLDMEYNGVPRN-VETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (503)
++.++|..|..+||-.. ...|..-...+-..|++.+|.++|+.-++.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35556666666555432 33444555555566666666666666666555553
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.80 E-value=1.1e+02 Score=24.17 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 042598 361 VGEGDEMIDRMKSAGYAIGK-KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPD 414 (503)
Q Consensus 361 ~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 414 (503)
.++..++|..|...|+.-.. ..|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 35589999999999876544 5677788888999999999999999998877774
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.59 E-value=12 Score=32.45 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=20.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 042598 240 IKGWCVDGKLDEAKRLAREMYRGGFELG 267 (503)
Q Consensus 240 i~~~~~~g~~~~a~~~~~~m~~~g~~~~ 267 (503)
+...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 4455677888888888887777665555
No 296
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.54 E-value=73 Score=25.92 Aligned_cols=56 Identities=5% Similarity=-0.017 Sum_probs=27.7
Q ss_pred HhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 042598 210 CENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLAREMYRGGFELG 267 (503)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 267 (503)
++.|+++....++..-.. ..+...-.+.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 14 a~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 455666665555442110 01101112344444556666666666777777776554
No 297
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.05 E-value=1.1e+02 Score=27.90 Aligned_cols=25 Identities=4% Similarity=0.141 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhH
Q 042598 166 LASCIDRLVRAGRPTQVLGFFERME 190 (503)
Q Consensus 166 ~~~li~~~~~~g~~~~A~~~f~~m~ 190 (503)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777777788888877777775
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.02 E-value=1.9e+02 Score=26.65 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=32.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC--HhHHHHHHHHHHHcCCC
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR--VGEGDEMIDRMKSAGYA 377 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 377 (503)
.+.+|.-|...|+.++|.+.++++..-... .......+..+.-+.++ .+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 355666667777777777777766432111 12333334444333222 23455555555555543
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.42 E-value=27 Score=30.13 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHcCChhHHHHHHHHhHHhcCCCCCHH-------hHHHHHHHHH--hCCChhHHHHHHHHH
Q 042598 170 IDRLVRAGRPTQVLGFFERMERDYGFKRDKD-------SLRLVVEKLC--ENGYASYAEKLVKDT 225 (503)
Q Consensus 170 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~-------~~~~ll~~~~--~~g~~~~a~~~~~~~ 225 (503)
+...++.|+.+....+++.+.+. |...+.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 44456778888877777766665 5444422 2344444432 567777777666653
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.00 E-value=32 Score=28.15 Aligned_cols=14 Identities=0% Similarity=0.133 Sum_probs=7.0
Q ss_pred HhCCChhHHHHHHH
Q 042598 210 CENGYASYAEKLVK 223 (503)
Q Consensus 210 ~~~g~~~~a~~~~~ 223 (503)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44555555554444
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.55 E-value=73 Score=28.69 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=35.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC--HhHHHHHHHHHHHcCCC
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR--VGEGDEMIDRMKSAGYA 377 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 377 (503)
.+.++.-|...|+.++|.+.++++...... ....+..+..+.-+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 345677777778888888888777532111 12333344444433222 34456666666655544
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.62 E-value=39 Score=28.40 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=20.4
Q ss_pred HHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042598 209 LCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDGKLDEAKRLA 256 (503)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 256 (503)
.++.|+.+....+++.-..-..++.. -.+.+...+..|+.+-+..++
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHH
Confidence 45666666655555432111111211 112344455566665444333
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.01 E-value=1.7e+02 Score=25.02 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=54.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEW--GCHP----NETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRL 390 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 390 (503)
++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+.. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 56778889999999999887543 3332 112223334333333333444455555522 44566667777888
Q ss_pred HccCCHHHHHHHHHHHH
Q 042598 391 CGIERIEQAMSVFEKMK 407 (503)
Q Consensus 391 ~~~g~~~~A~~~~~~m~ 407 (503)
.+.|+-++|.++|=+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 99999999999886544
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.95 E-value=1.7e+02 Score=25.01 Aligned_cols=89 Identities=9% Similarity=-0.018 Sum_probs=57.8
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042598 351 LIKSLYQAARVGEGDEMIDRMKSA--GYAI----GKKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTK 424 (503)
Q Consensus 351 li~~~~~~~~~~~a~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 424 (503)
-++.+....++++|.+++++..+. +++. +.......+..-.....-.-+..+.+++.. ..+...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467788899999999999987663 3332 112222333333333344455555666633 4566777788899
Q ss_pred HHhcCChHHHHHHHHHHH
Q 042598 425 WCAHNRVDKANALFDEAV 442 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~m~ 442 (503)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 999999999998876654
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.35 E-value=47 Score=27.97 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=6.8
Q ss_pred hcCChHHHHHHHHHHH
Q 042598 427 AHNRVDKANALFDEAV 442 (503)
Q Consensus 427 ~~g~~~~A~~~~~~m~ 442 (503)
..|+.+.++++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444444433
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.51 E-value=64 Score=26.94 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=14.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCccCcc
Q 042598 422 MTKWCAHNRVDKANALFDEAVRNGVEVKPK 451 (503)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 451 (503)
+...+..|+.+ +++.+.+.|..++..
T Consensus 176 L~~A~~~~~~~----~v~~Ll~~ga~~~~~ 201 (231)
T 3aji_A 176 LHLACDEERVE----EAKFLVTQGASIYIE 201 (231)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCSCCC
T ss_pred HHHHHHCCCHH----HHHHHHHCCCCCCCC
Confidence 33344566654 445556667666543
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.27 E-value=36 Score=27.79 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=11.9
Q ss_pred HHhcCCChHHHHHHHHhcc
Q 042598 140 YFGRRKDFKAIHDFLVDNK 158 (503)
Q Consensus 140 ~~~~~~~~~~a~~~~~~~~ 158 (503)
..+..|+.+.+..++.+.+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3445677777777776554
No 308
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=39.09 E-value=55 Score=29.49 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHhcCCChHHHHHHHHhccCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH---HhHHHHHHHHHh
Q 042598 138 TDYFGRRKDFKAIHDFLVDNKEVL---GPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK---DSLRLVVEKLCE 211 (503)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~---~~~~~ll~~~~~ 211 (503)
+...++.|+.+.+..++.+.+... |..- .+.+...+..|+.+-+..+++ . |..++. .-+ +.+...+.
T Consensus 28 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~----~-g~~~~~~~~~g~-t~L~~A~~ 100 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRK-STPLHLAAGYNRVRIVQLLLQ----H-GADVHAKDKGGL-VPLHNACS 100 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTC-CCHHHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTCC-CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCC-CCHHHHHHHcCCHHHHHHHHH----c-CCCCCccCCCCC-cHHHHHHH
Confidence 444556778888877777654422 2211 233444456676654444433 2 333322 222 23344456
Q ss_pred CCChhHHHHHHH
Q 042598 212 NGYASYAEKLVK 223 (503)
Q Consensus 212 ~g~~~~a~~~~~ 223 (503)
.|+.+-+..+++
T Consensus 101 ~g~~~iv~~Ll~ 112 (351)
T 3utm_A 101 YGHYEVTELLLK 112 (351)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 677665555554
No 309
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.24 E-value=2.3e+02 Score=25.76 Aligned_cols=149 Identities=14% Similarity=0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH----HHHHHcCCCCCHHH
Q 042598 272 NCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLF----YRMGEWGCHPNETT 347 (503)
Q Consensus 272 ~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t 347 (503)
.++..-|.+.++ +++|.+++..-- ..+.+.|+...|-++- +-..+.++++|..+
T Consensus 39 RTi~~Ry~~~k~-------y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~ 96 (336)
T 3lpz_A 39 RLVAARYSKQGN-------WAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGAS 96 (336)
T ss_dssp HHHHHHHHHTTC-------HHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHhhcC-------HHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 344445666665 667766653321 2234445554443333 44445566677666
Q ss_pred HHHHHHHHHHhCCHh-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH----------------
Q 042598 348 FLVLIKSLYQAARVG-EGDEMIDRMKS----AG--YAIGKKDYYEFLTRLCGIERIEQAMSVFE---------------- 404 (503)
Q Consensus 348 ~~~li~~~~~~~~~~-~a~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~---------------- 404 (503)
...++..+.....-+ .=..+.+.+++ .| -.-|......+...|.+.|++.+|..-|-
T Consensus 97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 666666655444321 11223333332 12 22345556666667777777666655431
Q ss_pred HHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 042598 405 KMKTDGHNPDSETY-DLLMTKWCAHNRVDKANALFDEAVR 443 (503)
Q Consensus 405 ~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~ 443 (503)
.+.+.+ +-+...| .-.+--|.-.|+...|..+++...+
T Consensus 177 w~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 177 WYKQDE-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111111 1111111 2223345556788888887777664
No 310
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.05 E-value=1.1e+02 Score=25.37 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=11.9
Q ss_pred HHHccCCHHHHHHHHHHHHHcCC
Q 042598 319 NLCKIRRSEDAIKLFYRMGEWGC 341 (503)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~ 341 (503)
..+..|+.+-+..+++.+.+.|.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCC
Confidence 33445555555555555555543
No 311
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.55 E-value=51 Score=27.60 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=9.6
Q ss_pred HHHHHhCCChhHHHHHHHH
Q 042598 206 VEKLCENGYASYAEKLVKD 224 (503)
Q Consensus 206 l~~~~~~g~~~~a~~~~~~ 224 (503)
+...+..|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334455555555555544
No 312
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.37 E-value=19 Score=17.91 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=14.7
Q ss_pred cccHHHHHHHHHHhhhhhhhcc
Q 042598 472 RETLPEKMARKRRRLKQIRLSF 493 (503)
Q Consensus 472 ~~~l~~~~~~~~~~l~ki~~~~ 493 (503)
+.++..+..+-..+++|+|..+
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777777777777554
No 313
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=37.30 E-value=2e+02 Score=25.62 Aligned_cols=254 Identities=7% Similarity=0.027 Sum_probs=113.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 042598 168 SCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG 247 (503)
Q Consensus 168 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 247 (503)
..+...++.|+.+....++...... --..|..- .+.+...+..|+.+-+..+++.-..--..|..-++ .+...+..|
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~-~~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g 102 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVN-CHASDGRK-STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLV-PLHNACSYG 102 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTT-CCCSSTTC-CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTT
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCC-CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHCC
Confidence 3455567789998888877643221 00112222 23455566788887766666532111112222222 344445667
Q ss_pred CHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhh------------
Q 042598 248 KLDEAKRLAREMYRGGFELGT---VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVET------------ 312 (503)
Q Consensus 248 ~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~------------ 312 (503)
+.+-+ +.+.+.|..++. .-++.|.. .+..|+ .+- ++.+.+.|..++...
T Consensus 103 ~~~iv----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~-------~~~----v~~Ll~~g~~~~~~~~~g~~~l~~a~~ 166 (351)
T 3utm_A 103 HYEVT----ELLLKHGACVNAMDLWQFTPLHE-AASKNR-------VEV----CSLLLSHGADPTLVNCHGKSAVDMAPT 166 (351)
T ss_dssp CHHHH----HHHHHTTCCTTCCCTTCCCHHHH-HHHTTC-------HHH----HHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred CHHHH----HHHHHCCCCCCCCCCCCCCHHHH-HHHcCC-------HHH----HHHHHHcCCCCccccCCCCcchHHHhh
Confidence 76544 444555654432 12233333 334444 333 333344454443211
Q ss_pred -----------HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHH
Q 042598 313 -----------FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKK 381 (503)
Q Consensus 313 -----------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 381 (503)
...-+...+..++.+....++..-.. ....+....+.+. ..+..+. ..-.++.+.+.+.|..++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~-~A~~~~~-~~~~~~~~~Ll~~g~~~~~~ 243 (351)
T 3utm_A 167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALH-CAVASLH-PKRKQVAELLLRKGANVNEK 243 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHH-HHHHCCS-TTHHHHHHHHHHTTCCTTCC
T ss_pred hhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHH-HHHHHhC-ccHHHHHHHHHHcCCCcCCc
Confidence 01112223344454444433322110 1111112222232 2233322 12345666667777665432
Q ss_pred H--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCccc
Q 042598 382 D--YYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE---TYDLLMTKWCAHNRVDKANALFDEAVRNGVEVKPKE 452 (503)
Q Consensus 382 ~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 452 (503)
. ..+.+...++.|+.+-+. .+.+.|..++.. -++.|.. .+..|+.+ +.+.+.+.|..|+...
T Consensus 244 ~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~n~~d~~g~t~L~~-A~~~~~~~----~v~~Ll~~gad~~~~~ 310 (351)
T 3utm_A 244 NKDFMTPLHVAAERAHNDVME----VLHKHGAKMNALDSLGQTALHR-AALAGHLQ----TCRLLLSYGSDPSIIS 310 (351)
T ss_dssp CTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHH-HHHcCcHH----HHHHHHHcCCCCCCcC
Confidence 1 122334455677775443 444555554432 2333333 34556655 4455667787766543
No 314
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.46 E-value=98 Score=25.79 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=11.4
Q ss_pred HHHhCCHhHHHHHHHHHHHcCC
Q 042598 355 LYQAARVGEGDEMIDRMKSAGY 376 (503)
Q Consensus 355 ~~~~~~~~~a~~~~~~m~~~g~ 376 (503)
.+..|+.+-+.++++.+.+.|.
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcCC
Confidence 3445555555555555555443
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.91 E-value=77 Score=26.91 Aligned_cols=51 Identities=6% Similarity=0.032 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 042598 293 EAEKVLLDMEYNGVPR-NVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHP 343 (503)
Q Consensus 293 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (503)
++.++|..|...||-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555666666555442 23344455555555666666666666655555554
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.50 E-value=3.1e+02 Score=26.33 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=27.2
Q ss_pred CChHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHH
Q 042598 145 KDFKAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLV 205 (503)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~l 205 (503)
.+.+-|.++..+.+.+--...|..-.+.+...|++++|.++--.-+. |+-++..|.+.+
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rF 401 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRF 401 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHH
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHH
Confidence 34444444444444433333444444445555555555554444443 444444444433
No 317
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=35.42 E-value=4.2e+02 Score=27.97 Aligned_cols=155 Identities=14% Similarity=0.006 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCC
Q 042598 237 DLLIKGWCVDGK---LDEAKRLAREMYRGG----FELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRN 309 (503)
Q Consensus 237 ~~li~~~~~~g~---~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~ 309 (503)
..++...|..|+ .++|.+.|++....+ +.||.. ..+...-.+.|. .++-..+++..... .+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~-------~~~~~~l~~~~~~~---~~ 757 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGG-------QDQWDFAWGQLQQA---QL 757 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSC-------HHHHHHHHHHHHHC---CS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCC-------HHHHHHHHHHHHcc---CC
Confidence 456777788776 457888888876542 455532 222222334455 34455566666652 34
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc------CCCCCHHH
Q 042598 310 VETFNVLISNLCKIRRSEDAIKLFYRMGEWG-CHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA------GYAIGKKD 382 (503)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~~~~~ 382 (503)
..--..++.+++...+.+...++++.....+ +++. ... .++.+.+.. ......+++.+.+. .+..+...
T Consensus 758 ~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n--~~g~~~~~~f~~~n~~~l~~~~~~~~~~ 833 (909)
T 4fke_A 758 VNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASN--VIGQPLAWDFVQSNWKKLFQDYGGGSFS 833 (909)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHS--TTHHHHHHHHHHHHCTTTTTSSSSCCCC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 4555778888888888888888887765543 3332 222 233444332 22223334444332 22233345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~ 407 (503)
+..+|...+..-.-++-.+-+++..
T Consensus 834 ~~~~i~~~~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 834 FSNLIQGVTRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6677777766544444444444444
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.87 E-value=1.5e+02 Score=28.94 Aligned_cols=65 Identities=8% Similarity=0.002 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCH--HhHH-HHHHHHHhCCChhHHHHHHHHHhc
Q 042598 163 PKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDK--DSLR-LVVEKLCENGYASYAEKLVKDTAN 227 (503)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 227 (503)
...+|.++..|...+.++.|..+..+..--.....|. ..|. .+-..+.-.+++.+|.+.+...-+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3466777777777777777777777653100000111 1111 122344556677777776666544
No 319
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.19 E-value=81 Score=29.69 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=11.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCccCcc
Q 042598 426 CAHNRVDKANALFDEAVRNGVEVKPK 451 (503)
Q Consensus 426 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 451 (503)
+..|+.+ +.+.+.+.|..|+..
T Consensus 352 ~~~g~~~----iv~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 352 AQQGHTD----IVTLLLKNGASPNEV 373 (437)
T ss_dssp HHTTCHH----HHHHHHHTTCCSCCC
T ss_pred HHCChHH----HHHHHHHCcCCCCCC
Confidence 3445543 445555667666543
No 320
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.75 E-value=1.2e+02 Score=27.19 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=4.0
Q ss_pred HHHhCCCCCC
Q 042598 405 KMKTDGHNPD 414 (503)
Q Consensus 405 ~m~~~g~~p~ 414 (503)
.+.+.|-.||
T Consensus 319 ~Ll~~GA~~d 328 (337)
T 4g8k_A 319 VLLSHGAKED 328 (337)
T ss_dssp HHHHTTCCC-
T ss_pred HHHHCcCCCC
Confidence 3444454444
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.32 E-value=1e+02 Score=24.38 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=37.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC--HhHHHHHHHHHHHcCCC
Q 042598 313 FNVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR--VGEGDEMIDRMKSAGYA 377 (503)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 377 (503)
.+.+|.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+.+.|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456777788888888888888887532111 22344444444444322 34566666666665544
No 322
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.05 E-value=83 Score=23.63 Aligned_cols=42 Identities=7% Similarity=-0.058 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Q 042598 332 LFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKS 373 (503)
Q Consensus 332 l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~ 373 (503)
+|+.+.+..+.|+...--.-|..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555556655555444445556677888888888877765
No 323
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.58 E-value=65 Score=20.69 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 042598 291 DSEAEKVLLDMEYNGVPRNVE--TFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 291 ~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (503)
.++..+.+.+|- |+.. +...++. ...|+++.|++.+-+|...+..|+
T Consensus 9 ~ee~l~~L~emF-----P~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDMF-----PNMDQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHC-----SSSCHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHHC-----CCCCHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 456666666664 4433 2222222 456888889888888877776665
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.14 E-value=1.4e+02 Score=25.40 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 042598 397 EQAMSVFEKMKTDGHNPDS-ETYDLLMTKWCAHNRVDKANALFDEAVRNGVEV 448 (503)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 448 (503)
+++..+|..|..+|+--.. .-|......+...|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445555555555443322 334455555555556666655555555555444
No 325
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.92 E-value=1.7e+02 Score=22.12 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCC
Q 042598 271 YNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNVETFNVLISNLCKIRR--SEDAIKLFYRMGEWGCHP 343 (503)
Q Consensus 271 ~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 343 (503)
.+.++.-|...|+ .++|...++++..... ....+..++..++-+.+. .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D-------~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGD-------ISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCC-------HHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCC-------HHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4456666666666 6777777777653100 122333444445555432 345666666666655443
No 326
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=30.45 E-value=1.4e+02 Score=22.19 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 042598 249 LDEAKRLAREMYRGGFELGTVAYNCILDCVSKL 281 (503)
Q Consensus 249 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 281 (503)
+.+|+.-+++.... ..|......++..+-..
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t 34 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT 34 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Confidence 34444444444332 23444444444444433
No 327
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.07 E-value=4e+02 Score=25.98 Aligned_cols=65 Identities=12% Similarity=-0.028 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCC-CCC--hhhHH-HHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 268 TVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGV-PRN--VETFN-VLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~-~~~--~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
...+|.+++.|...+. ++.|.++.....--.. ..| ...|. -+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~-------y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGE-------VDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSC-------STTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCc-------HHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4677888888888776 6678888877642100 011 11222 1234556678888998888876553
No 328
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=29.99 E-value=62 Score=25.27 Aligned_cols=125 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHH
Q 042598 314 NVLISNLCKIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYY--EFLTRLC 391 (503)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~ 391 (503)
.+.+...++.|+.+.+..+++.-...-...+..-++.+..++.... .++++.+.+.|..++..... +.+...+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-----VSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcCh-----HHHHHHHHhcCCCCCccCCCCCCHHHHHH
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCccCcc
Q 042598 392 GIERIEQAMSVFEKMKTDGHNPDSETYD--LLMTKWCAHNRVDKANALFDEAVRNGVEVKPK 451 (503)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 451 (503)
..|+.+ +++.+.+.|..++..... +.+...+..|+.+ +.+.+.+.|..++..
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~ 137 (165)
T 3twr_A 84 SYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE----ICKLLLQHGADPTKK 137 (165)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCC
T ss_pred HcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCccc
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.75 E-value=2.4e+02 Score=23.39 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=26.5
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 042598 238 LLIKGWCV---DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSK 280 (503)
Q Consensus 238 ~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 280 (503)
-+|+++.+ ..+.+.|+-.+.+|.+.| .|.-..-..++-+.-.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 34555543 478888888888888888 6555444444444433
No 330
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=29.75 E-value=1.7e+02 Score=21.70 Aligned_cols=11 Identities=0% Similarity=-0.094 Sum_probs=4.0
Q ss_pred HHHHHHHHccC
Q 042598 384 YEFLTRLCGIE 394 (503)
Q Consensus 384 ~~li~~~~~~g 394 (503)
...++...+.|
T Consensus 57 rd~~r~a~~~g 67 (119)
T 1wty_A 57 RAAIRGAFQVG 67 (119)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 33333333333
No 331
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.56 E-value=2.5e+02 Score=23.50 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 042598 234 KICDLLIKGWCV---DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 234 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 282 (503)
..+.-+|+++.+ ..+.+.|+-.+.+|.+.|..|.-..-..++-+.-..|
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344456666654 4889999999999999987776655555555544443
No 332
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.53 E-value=81 Score=23.69 Aligned_cols=45 Identities=7% Similarity=-0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 042598 295 EKVLLDMEYNGVPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEW 339 (503)
Q Consensus 295 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (503)
.-+|+.+....+.+++..--.-|..+...++++.|..+...+...
T Consensus 46 ~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 46 ALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 345666667677777665555566778889999999999888653
No 333
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.39 E-value=1.7e+02 Score=28.76 Aligned_cols=49 Identities=6% Similarity=-0.111 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCC
Q 042598 234 KICDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRK 284 (503)
Q Consensus 234 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 284 (503)
.-..-++..|.+.|..+.|.+++..+-..-+. +...| .-+.+|+|+|+.
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~ 565 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKY 565 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCCh
Confidence 33444555555555555555555555433221 22233 333445555543
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.08 E-value=1.8e+02 Score=22.49 Aligned_cols=37 Identities=8% Similarity=-0.047 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042598 394 ERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNR 430 (503)
Q Consensus 394 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 430 (503)
+..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3334444455444444333344444444444444443
No 335
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=27.72 E-value=3.8e+02 Score=25.05 Aligned_cols=163 Identities=9% Similarity=-0.055 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 042598 269 VAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNG----VPRNVETFNVLISNLCKIRRSEDAIKLFYRMGEWGCHPN 344 (503)
Q Consensus 269 ~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (503)
..-..++...|..|.. .-+++|.+.|+.....+ ++||.... +...-.+ ..++-..+++..... .+
T Consensus 198 ~lR~~~l~~ac~~g~~----~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~~~--~~~~~~~l~~~y~~s---~~ 266 (419)
T 3rjo_A 198 MLRSQLLLLACVHNYQ----PCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVGAQ--STEGWDFLYSKYQFS---LS 266 (419)
T ss_dssp HHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHHTT--SHHHHHHHHHHHHHC---CC
T ss_pred HHHHHHHHHHHhcCCH----HHHHHHHHHHHHHhhCCCCCCCCCCccee--EEeeeeC--CHHHHHHHHHHHhcC---CC
Confidence 3445667777777653 23678888898876542 55665432 1111122 234444555555554 35
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHH----HHhCCCCCCHHHHH
Q 042598 345 ETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCG-IERIEQAMSVFEK----MKTDGHNPDSETYD 419 (503)
Q Consensus 345 ~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~----m~~~g~~p~~~~~~ 419 (503)
..--..++.+++...+.+...++++......+........ ++.+.+. .-..+.|++++.+ +.+. +.++...+.
T Consensus 267 ~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~ 344 (419)
T 3rjo_A 267 STEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIA 344 (419)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHH
Confidence 5556788899999999999999999888755322333333 3344443 2345666666543 3322 234456778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 042598 420 LLMTKWCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 420 ~li~~~~~~g~~~~A~~~~~~m~~~ 444 (503)
.+|.+....-..++-++-++...+.
T Consensus 345 ~~i~~~~~~~~t~~~l~e~~~Ff~~ 369 (419)
T 3rjo_A 345 HMVMGTTNQFSTRTRLEEVKGFFSS 369 (419)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHh
Confidence 8887776654545544445555443
No 336
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.59 E-value=2.6e+02 Score=23.15 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=38.5
Q ss_pred HHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCH-----hHHHHHHHHHHHcCCC
Q 042598 316 LISNLC---KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARV-----GEGDEMIDRMKSAGYA 377 (503)
Q Consensus 316 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~-----~~a~~~~~~m~~~g~~ 377 (503)
+|+++. +..+.+.|+-.+.+|.+.| .|.-+.-..++.+.-..|.- ..|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 445543 4578899999999999999 76666656666666555542 2344445555555543
No 337
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.54 E-value=1.3e+02 Score=27.42 Aligned_cols=64 Identities=9% Similarity=0.001 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCC
Q 042598 201 SLRLVVEKLCENGYASYAEKLVKDTANEIFPDDKICDLLIKGWCVDG-KLDEAKRLAREMYRGGF 264 (503)
Q Consensus 201 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~ 264 (503)
-...++.-|...|+.++|...++++.....-...+...+..++-+.. ..+.+..++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 35667788888888888888888875411111222333333333221 23445556666665543
No 338
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.30 E-value=1.1e+02 Score=27.83 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=38.5
Q ss_pred HHHHHHhCCHhHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHH
Q 042598 352 IKSLYQAARVGEGDEMIDRMKS-AGYAIG---KKDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSE---TYDLLMTK 424 (503)
Q Consensus 352 i~~~~~~~~~~~a~~~~~~m~~-~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~ 424 (503)
+...+..|+.+-+..+++.-.. .+..++ ..-.+. +...+..|+.+-+. .+.+.|..++.. -++. +..
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~gad~~~~d~~g~tp-L~~ 250 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAM----RFVEMGIDVNMEDNEHTVP-LYL 250 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHH----HHHTTTCCTTCCCTTSCCH-HHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCCH-HHH
Confidence 3344567776655555443211 010022 112222 33345667765444 444556555432 2223 334
Q ss_pred HHhcCChHHHHHHHHH
Q 042598 425 WCAHNRVDKANALFDE 440 (503)
Q Consensus 425 ~~~~g~~~~A~~~~~~ 440 (503)
.+..|+.+-+..+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 4556887777666654
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.15 E-value=2.7e+02 Score=23.06 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 042598 316 LISNLC---KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360 (503)
Q Consensus 316 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~ 360 (503)
+|+++. +..+.+.|+-.+.+|.+.|-.|.-+.-..++.+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 344443 467899999999999998887776666666666554443
No 340
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.10 E-value=3.3e+02 Score=27.56 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=14.7
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 042598 316 LISNLCKIRRSEDAIKLFYRM 336 (503)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m 336 (503)
....+.-.|++|.|++.+...
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc
Confidence 455566678888888877643
No 341
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.68 E-value=2.3e+02 Score=22.07 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 042598 336 MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 336 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 394 (503)
|.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455433222 2334444444444555566665555544444444444444444444
No 342
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.67 E-value=45 Score=21.46 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042598 327 EDAIKLFYRMGEWGCHPNETTFLVLIKSL 355 (503)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 355 (503)
++|.+.|.+|.+..-.+...||...|..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45556666554443233335555555555
No 343
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.58 E-value=2.2e+02 Score=21.93 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=35.5
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh
Q 042598 148 KAIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215 (503)
Q Consensus 148 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~ 215 (503)
+.+.+.+.+.|.+.+.. -..++..+...+..-.|.++++.+.+. +...+..|..-.|+.+.+.|-+
T Consensus 7 ~~~~~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 7 KEALETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 34445555555544432 223344444455566677777777654 4444555655566666666644
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.35 E-value=1.6e+02 Score=22.75 Aligned_cols=57 Identities=11% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 042598 336 MGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 336 m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 394 (503)
+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 334455544322 22333333333 4455555555555444444444444444444444
No 345
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.75 E-value=1.6e+02 Score=27.52 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=6.3
Q ss_pred HHHHHhCCCCCCH
Q 042598 403 FEKMKTDGHNPDS 415 (503)
Q Consensus 403 ~~~m~~~g~~p~~ 415 (503)
++.+.+.|..|+.
T Consensus 360 v~~Ll~~ga~~~~ 372 (437)
T 1n11_A 360 VTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHHTTCCSCC
T ss_pred HHHHHHCcCCCCC
Confidence 3344455655543
No 346
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.12 E-value=1.8e+02 Score=22.18 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 042598 334 YRMGEWGCHPNETTFLVLIKSLYQAA-RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 334 ~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 394 (503)
+.|.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 347
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.81 E-value=1.6e+02 Score=19.79 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042598 397 EQAMSVFEKMKTDGHNPDSETYDLLMTKWCAH 428 (503)
Q Consensus 397 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 428 (503)
-.+.++++.+.+.+...+..|-.-.+..+...
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 33444444444433233333333333333333
No 348
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.64 E-value=3e+02 Score=22.78 Aligned_cols=46 Identities=15% Similarity=-0.034 Sum_probs=30.8
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 042598 237 DLLIKGWCV---DGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLC 282 (503)
Q Consensus 237 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 282 (503)
--+|+++.+ ..+.+.|+-.+.+|.+.|..|.-..-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345555554 4789999999999999887776555555554444333
No 349
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.49 E-value=3.8e+02 Score=24.07 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCCC
Q 042598 331 KLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAGYA 377 (503)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 377 (503)
++++.+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 34455555666666666666666666655566666666666665543
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.51 E-value=1.5e+02 Score=26.98 Aligned_cols=124 Identities=16% Similarity=0.067 Sum_probs=58.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCH--------------------HHHHHHHHHHHHhC--CHhHHHHHHHHHHHc
Q 042598 317 ISNLCKIRRSEDAIKLFYRMGEWGCHPNE--------------------TTFLVLIKSLYQAA--RVGEGDEMIDRMKSA 374 (503)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------------~t~~~li~~~~~~~--~~~~a~~~~~~m~~~ 374 (503)
+...+..|+.+-+..+++.-...|..++. .-.+.|. ..+..| +.+ +++.+.+.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~----~v~~Ll~~ 162 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLE----MIKILVQL 162 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHH----HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHH----HHHHHHHc
Confidence 33445567776666666654444444333 1223333 344555 444 34444444
Q ss_pred CCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 042598 375 GYAIGKK---DYYEFLTRLCGIERIEQAMSVFEKMKT-DGHNP---DSETYDLLMTKWCAHNRVDKANALFDEAVRNGVE 447 (503)
Q Consensus 375 g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 447 (503)
|..++.. -.+ .+...+..|+.+-+..+++.-.. .+..+ |..-++.| ...+..|+.+- .+.+++.|..
T Consensus 163 ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~gad 236 (364)
T 3ljn_A 163 GASPTAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDV----AMRFVEMGID 236 (364)
T ss_dssp TCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHH----HHHHHTTTCC
T ss_pred CCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHH----HHHHHHcCCC
Confidence 5554432 223 33344566777766666554322 00001 11222223 33445676553 4455566766
Q ss_pred cCcc
Q 042598 448 VKPK 451 (503)
Q Consensus 448 p~~~ 451 (503)
++..
T Consensus 237 ~~~~ 240 (364)
T 3ljn_A 237 VNME 240 (364)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6543
No 351
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.12 E-value=96 Score=20.39 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=17.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042598 384 YEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWC 426 (503)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 426 (503)
+.+++.+++..-+++++-.+++..+.| ..+..+|---+..++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 334444444334444444444444443 233444433333333
No 352
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.71 E-value=2e+02 Score=22.43 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=30.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 042598 336 MGEWGCHPNETTFLVLIKSLYQAA-RVGEGDEMIDRMKSAGYAIGKKDYYEFLTRLCGIERI 396 (503)
Q Consensus 336 m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 396 (503)
|.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455655554332 2333443333 4455666666666655555555555555555555533
No 353
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.09 E-value=3e+02 Score=21.88 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHHC
Q 042598 383 YYEFLTRLCGIERIEQAMSVFEKMKTDGHNP--DSETYDLLMT-K-----WCAHNRVDKANALFDEAVRN 444 (503)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~~ 444 (503)
|..-+..|- .|++-+|-+++++.=...-.+ +...|..||. . ..+.|+...|..++++....
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333333343 488888888888876543344 4556777776 2 23578999999998888663
No 354
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=21.98 E-value=4.3e+02 Score=23.67 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCh-----
Q 042598 236 CDLLIKGWCVDGKLDEAKRLAREMYRGGFELGTVAYNCILDCVSKLCRKKDPFRLDSEAEKVLLDMEYNGVPRNV----- 310 (503)
Q Consensus 236 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~~~~~~~~a~~~~~~m~~~g~~~~~----- 310 (503)
|..++-++.....-..|..+++.|.. ...|..++..++ +.... ..+....+.|..+....+..++
T Consensus 76 f~~ll~~l~~~~~~~DA~~L~~A~kg--~Gtde~~lieIL---~~Rs~-----~ql~~I~~aY~~~y~~~Le~di~~e~s 145 (320)
T 1yii_A 76 FETLMVSLMRPARIFDAHALKHAIKG--AGTNEKVLTEIL---ASRTP-----AEVQNIKQVYMQEYEANLEDKITGETS 145 (320)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHSS--SSCCHHHHHHHH---HHSCH-----HHHHHHHHHHHHHHSSCHHHHHHHHCC
T ss_pred HHHHHHHHccChHHHHHHHHHHHhcc--CCCchHHHhHHH---hcCCH-----HHHHHHHHHHHHhhCcCHHHHHHhhcC
Confidence 44444455444445567777777643 334554443333 32221 1133444444444332221111
Q ss_pred hhHHHHHHHHHccCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC----
Q 042598 311 ETFNVLISNLCKIRR-----------SEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG---- 375 (503)
Q Consensus 311 ~~~~~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g---- 375 (503)
..+..++-+.++..+ -.+|..+++.|.. +.-.|..++..++..- ...++....+.|+.+-...
T Consensus 146 G~~~~~l~~l~~~~r~~~~~vd~~~a~~dA~~L~~A~~~-~~Gtde~~li~Il~tR-s~~~L~~i~~~Y~~~~g~~L~~~ 223 (320)
T 1yii_A 146 GHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGEL-KWGTDEETFITILGTR-SVSHLRRVFDKYMTISGFQIEET 223 (320)
T ss_dssp HHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHHHHHHT-TTCSSHHHHHHHHHHS-CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CcHHHHHHHHHhhccCccccCCchHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHCcCHHHH
Confidence 124445555555433 1347777777764 2335777766666331 1112233333333322111
Q ss_pred ----CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042598 376 ----YAIGK-KDYYEFLTRLCGIERIEQAMSVFEKMKTDGHNPDSETYDLLMTKWCAHNRVDKANALFDEAV 442 (503)
Q Consensus 376 ----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 442 (503)
..-+. ....+++.+.. ......|..+++.|... -.|..++..++.. ...-+.....+.|+++-
T Consensus 224 I~~e~sGd~~~~Llalv~~~~-~~~~~~A~~L~~a~~g~--Gtd~~~Lirilv~-Rse~dl~~Ik~~y~~~y 291 (320)
T 1yii_A 224 IDRETSGDLEKLLLAVVKCIR-SVPAYFAETLYYSMKGA--GTDDDTLIRVMVS-RSEIDLLDIRHEFRKNF 291 (320)
T ss_dssp HCCTTCCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHSSS--SCCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred HhhhcCchHHHHHHHHHHhcc-CCcHHHHHHHHHhhccC--CCcHHHHHHHHHh-cCHHHHHHHHHHHHHhc
Confidence 11111 12222333222 22234677777777754 3465555544433 22345566666666543
No 355
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.83 E-value=72 Score=26.75 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=9.8
Q ss_pred HHccCCHHHHHHHHHHHH
Q 042598 390 LCGIERIEQAMSVFEKMK 407 (503)
Q Consensus 390 ~~~~g~~~~A~~~~~~m~ 407 (503)
.+..|+.+.+.++.+.+.
T Consensus 217 A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344555555555555554
No 356
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.27 E-value=2.3e+02 Score=20.32 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Q 042598 329 AIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR 360 (503)
Q Consensus 329 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~ 360 (503)
|.++.++...-|+.|+..+...++..|...+.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 45566666666777777666777766665553
No 357
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.24 E-value=2.2e+02 Score=22.51 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccC
Q 042598 326 SEDAIKLFYRMGEW-GCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSA--GYAIGKKDYYEFLTRLCGIE 394 (503)
Q Consensus 326 ~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g 394 (503)
.+++++-+.+..+. |++. ..--..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|
T Consensus 13 ~~~~~~~~~~~L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
No 358
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.13 E-value=53 Score=30.04 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcC
Q 042598 332 LFYRMGEWGCHPNETTFLVLIKSLYQAARVGEGDEMIDRMKSAG 375 (503)
Q Consensus 332 l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~~~~~m~~~g 375 (503)
+++.+.+.|+.|...++.-++..+++.=.++.+..+|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34444555555555555555555555555555566665555544
No 359
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.31 E-value=3.1e+02 Score=21.28 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=36.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHhcCCCCCHHhHHHHHHHHHhCCCh
Q 042598 149 AIHDFLVDNKEVLGPKTLASCIDRLVRAGRPTQVLGFFERMERDYGFKRDKDSLRLVVEKLCENGYA 215 (503)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~ 215 (503)
.+.+.+.+.|.+.+ .--..++..+...+..-.|.++++.+.+. +...+..|..-.|..+.+.|-+
T Consensus 13 ~~~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 13 RLRMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 34445555555332 23334455555556667777777777765 4445666666666667666654
No 360
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.08 E-value=3.9e+02 Score=22.36 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=43.3
Q ss_pred hhHHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-----HhHHHHHHHHHHHcCCC
Q 042598 311 ETFNVLISNLC---KIRRSEDAIKLFYRMGEWGCHPNETTFLVLIKSLYQAAR-----VGEGDEMIDRMKSAGYA 377 (503)
Q Consensus 311 ~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~-----~~~a~~~~~~m~~~g~~ 377 (503)
..+.-+|+++. +..+.+.|+-.+.+|.+.|-.|.-..-..++.+.-.-|. +..|...++.....|.+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33444556654 468899999999999999988776666666666655553 23445555555555653
Done!