BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042599
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 139 bits (351), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 123/266 (46%), Gaps = 71/266 (26%)
Query: 1 AVLPMTMKTAIQLGVLEIM------------------LPKNNKETPIILDRMLRLLASYS 42
AVLPM +K AI+L VLEIM LP N E P++LDR+LRLLASYS
Sbjct: 32 AVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYS 91
Query: 43 FLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQH 102
+T L + G +RLYGLA V ++ NEDGVSLAP LL+ DKV ++ W
Sbjct: 92 VVTYTL-RELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPW------- 143
Query: 103 SYLCMKDALLEGFINTLNRYYLKNAL---------------------------------- 128
+KDA+LEG I N+ Y N
Sbjct: 144 --FYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNG 200
Query: 129 LEG--SVPHTKAQSGMXXXXXXXXXXRMNNL-FN-----QSMHNHTVVEHVSGHMFIEVP 180
EG ++ +G +N + F+ Q + VEH+ G MF VP
Sbjct: 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVP 260
Query: 181 NGQALFMKWILSDWDDEECLKILKNC 206
G A+F+KWI DW DE CLK+LKNC
Sbjct: 261 KGDAIFIKWICHDWSDEHCLKLLKNC 286
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 127/282 (45%), Gaps = 104/282 (36%)
Query: 1 AVLPMTMKTAIQLGVLEIM-----------------LPKNNKETPIILDRMLRLLASYSF 43
+VLPM +K+A++L +LEI+ LP N + P++LDRMLRLLA Y
Sbjct: 30 SVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYII 89
Query: 44 LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
LTC++ T +DG QRLYGLA+V++Y NEDGVS++ L+ QDKV M+SW
Sbjct: 90 LTCSVRTQ-QDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESW-------- 140
Query: 104 YLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMXXXXXXXXXXRMNNLFNQSMH 163
Y+LK+A+L+G +P KA GM R N +FN+ M
Sbjct: 141 ------------------YHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMS 181
Query: 164 NHT------VVEHVSG------------------------------------HMFIEVPN 181
+H+ ++E +G H+ + P+
Sbjct: 182 DHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPS 241
Query: 182 -------GQALFM----------KWILSDWDDEECLKILKNC 206
G +F+ KWI DW DE CLK LKNC
Sbjct: 242 YPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNC 283
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 126 bits (316), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 123/265 (46%), Gaps = 70/265 (26%)
Query: 1 AVLPMTMKTAIQLGVLEIMLPKNNK-----------------ETPIILDRMLRLLASYSF 43
+VLPMT+K AI+LG+LEI++ K E P ++DR+LRLLASY+
Sbjct: 31 SVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNV 90
Query: 44 LTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQHS 103
+TC L KDG R YG A V ++ PNEDGVS+A L+ QDKV M+SW
Sbjct: 91 VTC-LVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW-------- 141
Query: 104 YLCMKDALLEGFIN-----------------TLNRYY---LKN-------ALLE------ 130
+KDA+L+G I NR + +KN LLE
Sbjct: 142 -YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFE 200
Query: 131 ---------GSVPHTKAQSGMXXXXXXXXXXRMNNLFNQSMHNHTVVEHVSGHMFIEVPN 181
G V T A + ++ +++ V HV G MF EVP+
Sbjct: 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-FPGVTHVGGDMFKEVPS 259
Query: 182 GQALFMKWILSDWDDEECLKILKNC 206
G + MKWIL DW D+ C +LKNC
Sbjct: 260 GDTILMKWILHDWSDQHCATLLKNC 284
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 47/181 (25%)
Query: 2 VLPMTMKTAIQLGVLEIM------------------LPKNNKET--PIILDRMLRLLASY 41
V P + AI L + EI+ LP + + + P LDRMLRLLASY
Sbjct: 36 VYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95
Query: 42 SFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWACKYTQ 101
S LT T I+DG A+R+YGL+ V +Y P+E LA +T
Sbjct: 96 SVLTSTTRT-IEDGGAERVYGLSMVGKYLVPDESRGYLA-----------------SFT- 136
Query: 102 HSYLCMKDALLEGFINTLNRYYLKNALLEGSVPHTKAQSGMXXXXXXXXXXRMNNLFNQS 161
++LC ALL+ ++N K A+++ + K G+ +MN +FN+S
Sbjct: 137 -TFLCYP-ALLQVWMN------FKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKS 188
Query: 162 M 162
M
Sbjct: 189 M 189
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
+EHV G MF VP G A+ +K + +W DE+C++ L NC
Sbjct: 254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNC 292
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 171 VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
V G MF +P+ A+ +KW+L DW+DE+ LKILKN
Sbjct: 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNS 276
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 171 VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
V G MF +P+ A+ +KW+L DW+DE+ LKILKN
Sbjct: 240 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNS 275
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 171 VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
V G MF +P+ A+ +KW+L DW+DE+ LKILKN
Sbjct: 237 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNS 272
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 170 HVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
+V G MFI VP A+ +K +L DW D++C+KILK C
Sbjct: 240 YVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKC 276
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 170 HVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
+V G MF +PN A+ +K+IL +W D++CL+ILK C
Sbjct: 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKC 271
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 168 VEHVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
+EHV G F VP G A +K + +W DE+C++ L NC
Sbjct: 254 IEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLSNC 292
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 21/99 (21%)
Query: 2 VLPMTMKTAIQLGVLEIM------------------LPKNNKET--PIILDRMLRLLASY 41
V P + AI L + EI+ LP + + + P LDR LRLLASY
Sbjct: 36 VYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPASTQHSDLPNRLDRXLRLLASY 95
Query: 42 SFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLA 80
S LT T I+DG A+R+YGL+ V +Y P+E LA
Sbjct: 96 SVLTSTTRT-IEDGGAERVYGLSXVGKYLVPDESRGYLA 133
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 170 HVSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
+V G F +PN A+ +K+IL +W D++CL+ILK C
Sbjct: 235 YVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKC 271
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 171 VSGHMFIEVPNGQALFMKWILSDWDDEECLKILKNC 206
V G EVP+ +K IL +W DE+ ++IL NC
Sbjct: 237 VEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNC 272
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 169 EHVSGHMFIEVPNGQALFM-KWILSDWDDEECLKILKNCCV 208
E + G F +P+G +++ K +L DWDD++ ++IL+
Sbjct: 255 EILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIAT 295
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 171 VSGHMFIEVPNGQALF-MKWILSDWDDEECLKILKNCCVQCNTG 213
V G F +P G + + +L DWDD + IL+ C +G
Sbjct: 224 VVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG 267
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 168 VEHVSGHMFIEVP-NGQALFMKWILSDWDDEECLKILKNC 206
V V G M EVP NG + I+ D D+ L++L NC
Sbjct: 219 VSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNC 258
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 166 TVVEHVSGHMFIEVP-NGQALFMKWILSDWDDEECLKILKNCCVQCNTG 213
TV E G F +P + + ++L +W DE+ L IL+ C G
Sbjct: 235 TVAE---GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG 280
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 166 TVVEHVSGHMFIEVP-NGQALFMKWILSDWDDEECLKILKNCCVQCNTG 213
TV E G F +P + + ++L +W DE+ L IL+ C G
Sbjct: 235 TVAE---GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,910,330
Number of Sequences: 62578
Number of extensions: 210610
Number of successful extensions: 391
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 22
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)