Query 042599
Match_columns 214
No_of_seqs 215 out of 1077
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 1.5E-35 5E-40 254.4 14.7 205 2-213 20-276 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 2.7E-33 9.3E-38 241.2 18.5 211 1-213 31-291 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 4.3E-31 1.5E-35 227.7 16.6 211 1-213 32-293 (368)
4 3lst_A CALO1 methyltransferase 100.0 3E-30 1E-34 220.6 16.5 201 2-213 34-279 (348)
5 3i53_A O-methyltransferase; CO 100.0 6.1E-30 2.1E-34 217.2 15.1 203 1-213 16-267 (332)
6 3gwz_A MMCR; methyltransferase 100.0 7.1E-30 2.4E-34 220.1 14.3 202 2-213 50-300 (369)
7 3dp7_A SAM-dependent methyltra 100.0 7E-29 2.4E-33 213.4 12.8 199 2-213 27-280 (363)
8 1zg3_A Isoflavanone 4'-O-methy 100.0 2.7E-28 9.2E-33 209.2 14.9 209 2-212 22-282 (358)
9 2ip2_A Probable phenazine-spec 100.0 5.8E-28 2E-32 204.9 13.7 198 2-213 20-265 (334)
10 1fp2_A Isoflavone O-methyltran 100.0 7.8E-28 2.7E-32 205.9 14.1 202 2-212 28-277 (352)
11 1fp1_D Isoliquiritigenin 2'-O- 99.9 3.6E-27 1.2E-31 203.2 14.9 210 2-213 36-299 (372)
12 1x19_A CRTF-related protein; m 99.9 1E-25 3.4E-30 193.2 15.2 200 2-213 43-288 (359)
13 2r3s_A Uncharacterized protein 99.9 1.2E-25 4.2E-30 190.3 14.6 201 2-213 18-264 (335)
14 3mcz_A O-methyltransferase; ad 99.9 1E-25 3.5E-30 192.3 13.7 199 2-213 36-280 (352)
15 1qzz_A RDMB, aclacinomycin-10- 99.9 2.1E-25 7.4E-30 191.7 14.6 202 2-213 28-280 (374)
16 1tw3_A COMT, carminomycin 4-O- 99.9 3.5E-25 1.2E-29 189.6 14.0 202 2-213 31-281 (360)
17 2qm3_A Predicted methyltransfe 98.3 6.1E-07 2.1E-11 76.8 4.7 180 20-213 61-270 (373)
18 2qe6_A Uncharacterized protein 98.0 9.3E-06 3.2E-10 66.6 6.5 83 131-213 77-189 (274)
19 4gek_A TRNA (CMO5U34)-methyltr 97.8 6.4E-05 2.2E-09 61.2 8.0 83 131-213 70-171 (261)
20 3dtn_A Putative methyltransfer 97.8 4.1E-05 1.4E-09 60.4 6.6 81 133-213 46-141 (234)
21 3h2b_A SAM-dependent methyltra 97.7 4.7E-05 1.6E-09 58.7 6.3 82 132-213 42-134 (203)
22 1ve3_A Hypothetical protein PH 97.7 5E-05 1.7E-09 59.4 5.6 82 132-213 39-135 (227)
23 3ou2_A SAM-dependent methyltra 97.7 9E-05 3.1E-09 57.5 6.8 81 133-213 48-139 (218)
24 3hnr_A Probable methyltransfer 97.7 0.00015 5.3E-09 56.4 8.0 83 131-213 45-138 (220)
25 3jwg_A HEN1, methyltransferase 97.4 0.00029 1E-08 54.9 6.5 83 131-213 29-134 (219)
26 3jwh_A HEN1; methyltransferase 97.4 0.00035 1.2E-08 54.4 6.6 83 131-213 29-134 (217)
27 3dli_A Methyltransferase; PSI- 97.3 0.00043 1.5E-08 54.9 6.9 79 132-213 42-133 (240)
28 2p7i_A Hypothetical protein; p 97.3 0.00026 9E-09 55.8 5.3 80 132-213 43-134 (250)
29 1xtp_A LMAJ004091AAA; SGPP, st 97.3 0.00029 9.9E-09 56.0 5.4 82 132-213 94-190 (254)
30 3ujc_A Phosphoethanolamine N-m 97.3 0.00051 1.7E-08 54.8 6.8 81 133-213 57-152 (266)
31 3lcc_A Putative methyl chlorid 97.3 0.00038 1.3E-08 54.9 5.6 81 133-213 68-164 (235)
32 3g07_A 7SK snRNA methylphospha 97.2 0.00028 9.5E-09 58.0 4.8 48 166-213 154-213 (292)
33 3ggd_A SAM-dependent methyltra 97.2 0.00048 1.7E-08 54.6 6.0 82 132-213 57-156 (245)
34 1vl5_A Unknown conserved prote 97.2 0.0003 1E-08 56.4 4.5 80 132-213 38-133 (260)
35 3cgg_A SAM-dependent methyltra 97.2 0.00091 3.1E-08 50.5 6.8 83 131-213 46-140 (195)
36 3g5l_A Putative S-adenosylmeth 97.1 0.00033 1.1E-08 55.8 4.3 80 132-213 45-138 (253)
37 3pfg_A N-methyltransferase; N, 97.1 0.00063 2.2E-08 54.5 5.4 82 132-213 51-144 (263)
38 3mgg_A Methyltransferase; NYSG 97.0 0.001 3.6E-08 53.6 5.8 79 133-213 39-135 (276)
39 3g2m_A PCZA361.24; SAM-depende 96.9 0.0019 6.4E-08 52.9 7.1 82 132-213 83-183 (299)
40 3i9f_A Putative type 11 methyl 96.9 0.00079 2.7E-08 50.2 4.3 78 132-213 18-105 (170)
41 2ex4_A Adrenal gland protein A 96.9 0.0013 4.4E-08 52.1 5.5 82 132-213 80-178 (241)
42 3dlc_A Putative S-adenosyl-L-m 96.9 0.00092 3.2E-08 51.5 4.3 77 134-213 46-141 (219)
43 3ofk_A Nodulation protein S; N 96.8 0.0016 5.4E-08 50.5 5.6 81 133-213 53-147 (216)
44 2o57_A Putative sarcosine dime 96.8 0.001 3.4E-08 54.3 4.7 79 133-213 84-180 (297)
45 3e23_A Uncharacterized protein 96.8 0.00077 2.6E-08 52.1 3.7 80 133-213 45-134 (211)
46 3l8d_A Methyltransferase; stru 96.8 0.0021 7.3E-08 50.5 6.3 80 132-213 54-146 (242)
47 3bxo_A N,N-dimethyltransferase 96.7 0.0016 5.6E-08 51.0 5.1 82 132-213 41-134 (239)
48 1xxl_A YCGJ protein; structura 96.7 0.0014 4.9E-08 51.8 4.6 80 132-213 22-117 (239)
49 1kpg_A CFA synthase;, cyclopro 96.7 0.0028 9.5E-08 51.4 6.3 80 133-213 66-161 (287)
50 1pjz_A Thiopurine S-methyltran 96.7 0.0021 7.1E-08 49.8 5.3 82 132-213 23-133 (203)
51 3sm3_A SAM-dependent methyltra 96.6 0.0032 1.1E-07 49.0 6.0 82 132-213 31-134 (235)
52 3ocj_A Putative exported prote 96.6 0.0016 5.4E-08 53.6 4.1 82 132-213 119-220 (305)
53 3dh0_A SAM dependent methyltra 96.6 0.0028 9.5E-08 49.1 5.3 80 132-213 38-136 (219)
54 1y8c_A S-adenosylmethionine-de 96.6 0.0019 6.7E-08 50.7 4.3 81 133-213 39-135 (246)
55 2p35_A Trans-aconitate 2-methy 96.5 0.0035 1.2E-07 49.7 5.2 79 133-213 35-125 (259)
56 3ege_A Putative methyltransfer 96.5 0.0088 3E-07 47.9 7.6 78 132-213 35-123 (261)
57 4hg2_A Methyltransferase type 96.5 0.0059 2E-07 49.3 6.6 78 132-213 40-128 (257)
58 2yqz_A Hypothetical protein TT 96.4 0.0052 1.8E-07 48.8 6.2 79 133-213 41-134 (263)
59 3thr_A Glycine N-methyltransfe 96.4 0.0023 7.8E-08 52.0 4.1 83 131-213 57-168 (293)
60 2gb4_A Thiopurine S-methyltran 96.4 0.0043 1.5E-07 50.0 5.4 82 132-213 69-184 (252)
61 3m70_A Tellurite resistance pr 96.4 0.0026 8.8E-08 51.6 4.1 82 132-213 121-216 (286)
62 4fsd_A Arsenic methyltransfera 96.4 0.0051 1.7E-07 52.4 6.1 79 133-213 85-196 (383)
63 3bus_A REBM, methyltransferase 96.3 0.0056 1.9E-07 49.1 5.7 79 133-213 63-159 (273)
64 3gu3_A Methyltransferase; alph 96.3 0.0033 1.1E-07 51.1 4.2 80 132-213 23-119 (284)
65 3g5t_A Trans-aconitate 3-methy 96.2 0.0057 1.9E-07 50.0 5.5 80 131-213 36-142 (299)
66 3bkw_A MLL3908 protein, S-aden 96.2 0.0068 2.3E-07 47.5 5.7 80 132-213 44-137 (243)
67 4htf_A S-adenosylmethionine-de 96.2 0.0044 1.5E-07 50.2 4.8 80 132-213 69-166 (285)
68 2xvm_A Tellurite resistance pr 96.2 0.0072 2.5E-07 45.8 5.7 81 133-213 34-129 (199)
69 1af7_A Chemotaxis receptor met 96.2 0.0032 1.1E-07 51.5 3.8 47 167-213 195-245 (274)
70 2p8j_A S-adenosylmethionine-de 96.2 0.0088 3E-07 45.8 6.1 82 132-213 24-121 (209)
71 3f4k_A Putative methyltransfer 96.1 0.0078 2.7E-07 47.7 5.5 78 133-213 48-143 (257)
72 2pxx_A Uncharacterized protein 96.1 0.0076 2.6E-07 46.1 5.3 82 132-213 43-152 (215)
73 1nkv_A Hypothetical protein YJ 96.1 0.0045 1.5E-07 49.1 4.1 79 133-213 38-133 (256)
74 3htx_A HEN1; HEN1, small RNA m 96.1 0.016 5.3E-07 54.5 7.9 83 131-213 721-828 (950)
75 3ccf_A Cyclopropane-fatty-acyl 96.0 0.0073 2.5E-07 48.7 4.9 80 132-213 58-147 (279)
76 3vc1_A Geranyl diphosphate 2-C 96.0 0.013 4.6E-07 48.1 6.4 78 133-213 119-214 (312)
77 3hem_A Cyclopropane-fatty-acyl 95.9 0.02 6.7E-07 46.8 7.3 80 133-213 74-176 (302)
78 2vdw_A Vaccinia virus capping 95.9 0.01 3.5E-07 49.0 5.5 81 133-213 50-162 (302)
79 2gs9_A Hypothetical protein TT 95.8 0.013 4.4E-07 45.0 5.5 78 132-213 37-125 (211)
80 3kkz_A Uncharacterized protein 95.8 0.0076 2.6E-07 48.3 4.2 77 133-213 48-143 (267)
81 3bgv_A MRNA CAP guanine-N7 met 95.7 0.044 1.5E-06 44.9 8.6 82 132-213 35-148 (313)
82 1ri5_A MRNA capping enzyme; me 95.7 0.028 9.4E-07 45.3 7.2 83 131-213 64-167 (298)
83 2fk8_A Methoxy mycolic acid sy 95.6 0.019 6.6E-07 47.1 6.0 80 133-213 92-187 (318)
84 2kw5_A SLR1183 protein; struct 95.5 0.022 7.5E-07 43.3 5.7 78 134-213 32-124 (202)
85 3d2l_A SAM-dependent methyltra 95.4 0.023 7.8E-07 44.4 5.4 80 133-213 35-130 (243)
86 3giw_A Protein of unknown func 95.4 0.038 1.3E-06 45.2 6.7 83 131-213 78-193 (277)
87 1vlm_A SAM-dependent methyltra 95.2 0.028 9.4E-07 43.6 5.5 78 132-213 48-132 (219)
88 1wzn_A SAM-dependent methyltra 95.2 0.038 1.3E-06 43.5 6.4 81 133-213 43-138 (252)
89 1dus_A MJ0882; hypothetical pr 95.0 0.068 2.3E-06 39.8 6.9 80 133-213 54-150 (194)
90 2pjd_A Ribosomal RNA small sub 94.9 0.023 7.8E-07 47.6 4.5 81 133-213 198-296 (343)
91 3uwp_A Histone-lysine N-methyl 94.9 0.052 1.8E-06 47.1 6.6 79 132-213 174-281 (438)
92 2avn_A Ubiquinone/menaquinone 94.9 0.029 9.8E-07 44.7 4.8 81 131-213 54-145 (260)
93 3dxy_A TRNA (guanine-N(7)-)-me 94.8 0.036 1.2E-06 43.4 5.1 89 124-213 27-143 (218)
94 3e05_A Precorrin-6Y C5,15-meth 94.8 0.052 1.8E-06 41.4 5.8 76 133-213 42-135 (204)
95 3hm2_A Precorrin-6Y C5,15-meth 94.8 0.055 1.9E-06 40.0 5.8 74 133-213 27-120 (178)
96 3cc8_A Putative methyltransfer 94.5 0.073 2.5E-06 40.9 6.1 77 132-213 33-123 (230)
97 2fca_A TRNA (guanine-N(7)-)-me 94.4 0.21 7.3E-06 38.5 8.5 82 131-213 38-146 (213)
98 3bwc_A Spermidine synthase; SA 94.4 0.024 8.2E-07 46.7 3.1 81 133-213 97-203 (304)
99 1yzh_A TRNA (guanine-N(7)-)-me 94.3 0.13 4.4E-06 39.6 7.2 82 131-213 41-149 (214)
100 3b3j_A Histone-arginine methyl 94.3 0.023 7.8E-07 50.1 3.0 81 132-213 159-256 (480)
101 3ckk_A TRNA (guanine-N(7)-)-me 94.1 0.061 2.1E-06 42.6 4.9 81 132-213 47-161 (235)
102 4dcm_A Ribosomal RNA large sub 94.1 0.038 1.3E-06 47.1 3.9 81 133-213 224-327 (375)
103 2b3t_A Protein methyltransfera 94.0 0.071 2.4E-06 42.9 5.3 82 132-213 110-231 (276)
104 4dzr_A Protein-(glutamine-N5) 94.0 0.0068 2.3E-07 46.4 -0.9 82 132-213 31-157 (215)
105 3p2e_A 16S rRNA methylase; met 93.9 0.14 4.8E-06 40.1 6.7 82 131-213 24-132 (225)
106 2y1w_A Histone-arginine methyl 93.8 0.065 2.2E-06 44.9 4.7 81 132-213 51-148 (348)
107 1zx0_A Guanidinoacetate N-meth 93.7 0.048 1.6E-06 42.7 3.7 82 132-213 61-163 (236)
108 3iv6_A Putative Zn-dependent a 93.7 0.065 2.2E-06 43.4 4.5 80 133-213 47-141 (261)
109 3bkx_A SAM-dependent methyltra 93.7 0.078 2.7E-06 42.3 4.9 80 132-213 44-152 (275)
110 3e8s_A Putative SAM dependent 93.6 0.035 1.2E-06 42.6 2.7 78 132-213 53-145 (227)
111 3mb5_A SAM-dependent methyltra 93.6 0.066 2.3E-06 42.3 4.3 74 133-213 95-187 (255)
112 3adn_A Spermidine synthase; am 92.9 0.17 5.8E-06 41.5 5.8 82 132-213 84-191 (294)
113 3kr9_A SAM-dependent methyltra 92.7 0.25 8.6E-06 39.0 6.4 77 133-213 17-112 (225)
114 2vdv_E TRNA (guanine-N(7)-)-me 92.7 0.082 2.8E-06 41.8 3.6 76 133-213 51-166 (246)
115 3gjy_A Spermidine synthase; AP 92.6 0.12 4E-06 43.1 4.5 80 134-213 92-193 (317)
116 3q87_B N6 adenine specific DNA 92.5 0.13 4.3E-06 38.3 4.2 75 133-213 25-116 (170)
117 2i62_A Nicotinamide N-methyltr 92.5 0.038 1.3E-06 43.7 1.3 46 168-213 136-191 (265)
118 1jsx_A Glucose-inhibited divis 92.2 0.19 6.5E-06 38.1 5.0 76 132-213 66-158 (207)
119 1yb2_A Hypothetical protein TA 92.2 0.18 6.1E-06 40.5 5.0 74 133-213 112-204 (275)
120 1fbn_A MJ fibrillarin homologu 91.9 0.33 1.1E-05 37.7 6.2 77 132-213 75-171 (230)
121 3m33_A Uncharacterized protein 91.6 0.038 1.3E-06 43.0 0.4 74 132-213 49-135 (226)
122 1r7j_A Conserved hypothetical 91.1 0.045 1.5E-06 37.3 0.3 43 20-72 26-68 (95)
123 3b73_A PHIH1 repressor-like pr 91.1 0.15 5.3E-06 35.7 3.1 45 20-73 33-79 (111)
124 3orh_A Guanidinoacetate N-meth 91.1 0.21 7.2E-06 39.2 4.2 88 126-213 55-163 (236)
125 3ntv_A MW1564 protein; rossman 91.0 0.17 5.9E-06 39.5 3.6 78 131-213 71-169 (232)
126 3tfw_A Putative O-methyltransf 90.9 0.35 1.2E-05 38.2 5.4 78 131-213 63-163 (248)
127 1l3i_A Precorrin-6Y methyltran 90.5 0.1 3.5E-06 38.7 1.8 77 132-213 34-127 (192)
128 1iy9_A Spermidine synthase; ro 90.1 0.14 4.7E-06 41.5 2.4 82 132-213 76-182 (275)
129 2pwy_A TRNA (adenine-N(1)-)-me 89.9 0.2 6.9E-06 39.3 3.2 74 133-213 98-191 (258)
130 1ej0_A FTSJ; methyltransferase 89.9 0.28 9.5E-06 35.6 3.7 80 133-213 24-129 (180)
131 3duw_A OMT, O-methyltransferas 89.8 0.42 1.5E-05 36.7 4.9 78 131-213 58-160 (223)
132 3mq0_A Transcriptional repress 89.6 0.088 3E-06 42.8 0.8 42 20-70 51-92 (275)
133 3q7e_A Protein arginine N-meth 89.6 0.75 2.6E-05 38.4 6.6 81 132-213 67-166 (349)
134 2heo_A Z-DNA binding protein 1 89.6 0.12 4.1E-06 32.6 1.3 36 20-64 31-66 (67)
135 3mq2_A 16S rRNA methyltransfer 89.6 0.66 2.3E-05 35.4 5.8 79 132-213 28-133 (218)
136 2gpy_A O-methyltransferase; st 89.4 0.29 9.9E-06 38.0 3.7 77 132-213 55-153 (233)
137 2i7c_A Spermidine synthase; tr 89.3 0.19 6.5E-06 40.8 2.6 81 133-213 80-185 (283)
138 2ipx_A RRNA 2'-O-methyltransfe 89.1 0.65 2.2E-05 36.0 5.6 77 132-213 78-175 (233)
139 1y0u_A Arsenical resistance op 89.1 0.13 4.5E-06 34.5 1.3 40 20-69 49-88 (96)
140 1g6q_1 HnRNP arginine N-methyl 89.1 0.79 2.7E-05 37.8 6.3 82 132-213 39-138 (328)
141 3eey_A Putative rRNA methylase 88.9 0.99 3.4E-05 33.7 6.3 82 132-213 23-132 (197)
142 3fpf_A Mtnas, putative unchara 88.8 0.97 3.3E-05 37.2 6.6 76 132-213 123-215 (298)
143 2ozv_A Hypothetical protein AT 88.8 0.49 1.7E-05 37.7 4.7 81 133-213 38-163 (260)
144 1o54_A SAM-dependent O-methylt 88.7 0.29 9.8E-06 39.3 3.2 74 133-213 114-206 (277)
145 1inl_A Spermidine synthase; be 88.5 0.28 9.5E-06 40.1 3.1 80 133-213 92-198 (296)
146 2b2c_A Spermidine synthase; be 88.4 0.18 6.1E-06 41.8 1.9 81 132-213 109-215 (314)
147 1o9g_A RRNA methyltransferase; 88.3 0.39 1.3E-05 37.8 3.8 44 170-213 149-207 (250)
148 1mjf_A Spermidine synthase; sp 88.3 0.45 1.5E-05 38.5 4.2 81 132-213 76-186 (281)
149 3r4k_A Transcriptional regulat 88.2 0.1 3.5E-06 42.0 0.3 43 20-70 27-69 (260)
150 2xrn_A HTH-type transcriptiona 88.1 0.2 6.7E-06 39.8 1.9 43 20-70 27-69 (241)
151 1ne2_A Hypothetical protein TA 87.9 0.7 2.4E-05 34.8 4.9 77 133-210 53-139 (200)
152 3njr_A Precorrin-6Y methylase; 87.8 1.1 3.8E-05 34.2 6.0 74 133-213 57-147 (204)
153 3gdh_A Trimethylguanosine synt 87.8 0.068 2.3E-06 41.8 -1.0 81 131-213 78-174 (241)
154 3lbf_A Protein-L-isoaspartate 87.8 0.72 2.4E-05 34.9 4.9 74 132-213 78-167 (210)
155 1vbf_A 231AA long hypothetical 87.7 0.42 1.4E-05 36.8 3.6 73 133-213 72-158 (231)
156 3dmg_A Probable ribosomal RNA 87.7 1.2 4E-05 37.9 6.6 81 133-213 235-333 (381)
157 1tbx_A ORF F-93, hypothetical 87.6 0.38 1.3E-05 32.2 2.9 45 21-71 33-77 (99)
158 1uir_A Polyamine aminopropyltr 87.6 0.39 1.3E-05 39.5 3.5 82 132-213 78-188 (314)
159 2pt6_A Spermidine synthase; tr 87.6 0.29 9.8E-06 40.6 2.6 80 133-213 118-223 (321)
160 3gnl_A Uncharacterized protein 87.6 1.1 3.7E-05 35.7 5.9 77 133-213 23-118 (244)
161 1jg1_A PIMT;, protein-L-isoasp 87.5 0.76 2.6E-05 35.7 5.0 74 132-213 92-182 (235)
162 1ws6_A Methyltransferase; stru 87.4 0.17 5.7E-06 36.9 1.0 80 132-213 42-140 (171)
163 4e2x_A TCAB9; kijanose, tetron 87.4 0.55 1.9E-05 39.9 4.4 76 133-213 109-201 (416)
164 1ub9_A Hypothetical protein PH 87.2 0.33 1.1E-05 32.3 2.4 61 6-69 12-82 (100)
165 2ld4_A Anamorsin; methyltransf 87.2 0.23 7.7E-06 36.8 1.6 45 167-213 43-94 (176)
166 3lcv_B Sisomicin-gentamicin re 86.8 0.29 9.8E-06 39.8 2.1 81 132-213 133-229 (281)
167 3c3p_A Methyltransferase; NP_9 86.7 0.23 7.9E-06 37.9 1.5 78 131-213 56-153 (210)
168 3lec_A NADB-rossmann superfami 86.6 1.4 4.9E-05 34.7 6.1 78 132-213 22-118 (230)
169 2zfu_A Nucleomethylin, cerebra 86.6 0.23 7.8E-06 37.9 1.4 44 167-213 98-144 (215)
170 3f6o_A Probable transcriptiona 86.3 0.59 2E-05 32.6 3.4 43 5-47 13-64 (118)
171 1nt2_A Fibrillarin-like PRE-rR 86.2 2 7E-05 32.9 6.8 76 133-213 59-154 (210)
172 1g8a_A Fibrillarin-like PRE-rR 86.1 2.1 7.3E-05 32.7 6.9 77 133-213 75-171 (227)
173 3tr6_A O-methyltransferase; ce 86.1 0.29 9.8E-06 37.7 1.8 77 132-213 65-167 (225)
174 2g7u_A Transcriptional regulat 86.1 0.17 5.9E-06 40.5 0.5 42 20-71 35-76 (257)
175 1zq9_A Probable dimethyladenos 86.0 0.94 3.2E-05 36.6 4.9 72 133-205 30-116 (285)
176 3u81_A Catechol O-methyltransf 85.6 0.72 2.4E-05 35.5 3.8 80 131-213 58-163 (221)
177 2yxe_A Protein-L-isoaspartate 85.6 0.55 1.9E-05 35.7 3.2 73 133-213 79-170 (215)
178 1nv8_A HEMK protein; class I a 85.5 2.1 7E-05 34.6 6.7 79 132-213 124-242 (284)
179 1p91_A Ribosomal RNA large sub 85.5 1.4 4.8E-05 34.7 5.7 73 132-213 86-171 (269)
180 3mti_A RRNA methylase; SAM-dep 85.4 1.1 3.6E-05 33.2 4.6 82 132-213 23-128 (185)
181 2uyo_A Hypothetical protein ML 85.4 2.4 8.3E-05 34.9 7.2 86 128-213 99-211 (310)
182 3c3y_A Pfomt, O-methyltransfer 85.4 0.56 1.9E-05 36.7 3.2 78 131-213 70-174 (237)
183 2o07_A Spermidine synthase; st 85.3 0.27 9.2E-06 40.4 1.3 81 133-213 97-202 (304)
184 1xj5_A Spermidine synthase 1; 85.3 0.47 1.6E-05 39.6 2.8 80 133-213 122-228 (334)
185 3grz_A L11 mtase, ribosomal pr 85.0 0.53 1.8E-05 35.6 2.8 76 132-213 61-152 (205)
186 2vn2_A DNAD, chromosome replic 85.0 0.34 1.2E-05 34.6 1.5 49 20-69 57-105 (128)
187 2avd_A Catechol-O-methyltransf 84.9 0.34 1.1E-05 37.4 1.6 77 132-213 70-172 (229)
188 2ia2_A Putative transcriptiona 84.9 0.2 6.7E-06 40.4 0.3 41 20-70 42-82 (265)
189 2fyt_A Protein arginine N-meth 84.5 0.73 2.5E-05 38.3 3.6 82 132-213 65-164 (340)
190 3fzg_A 16S rRNA methylase; met 84.3 0.3 1E-05 37.8 1.1 79 131-213 49-145 (200)
191 3df8_A Possible HXLR family tr 84.1 0.51 1.7E-05 32.7 2.1 45 20-71 48-93 (111)
192 1dl5_A Protein-L-isoaspartate 84.1 0.95 3.3E-05 37.1 4.1 73 133-213 77-168 (317)
193 4a5n_A Uncharacterized HTH-typ 83.9 0.61 2.1E-05 33.5 2.5 49 20-71 45-94 (131)
194 3cuo_A Uncharacterized HTH-typ 83.9 0.36 1.2E-05 32.0 1.2 38 10-47 24-71 (99)
195 2v79_A DNA replication protein 83.4 0.64 2.2E-05 33.6 2.5 50 20-70 57-106 (135)
196 1mkm_A ICLR transcriptional re 83.3 0.45 1.5E-05 37.8 1.7 40 20-68 29-68 (249)
197 2hnk_A SAM-dependent O-methylt 83.2 0.66 2.3E-05 36.1 2.7 78 131-213 60-174 (239)
198 2oqg_A Possible transcriptiona 83.0 0.41 1.4E-05 32.8 1.2 28 20-47 40-67 (114)
199 1sui_A Caffeoyl-COA O-methyltr 82.9 1.3 4.3E-05 35.0 4.3 78 131-213 79-183 (247)
200 3r0q_C Probable protein argini 82.5 1.3 4.6E-05 37.2 4.5 81 133-213 65-162 (376)
201 3p9n_A Possible methyltransfer 82.5 2.6 8.8E-05 31.2 5.7 81 132-213 45-146 (189)
202 2bm8_A Cephalosporin hydroxyla 82.4 1.7 5.9E-05 34.0 4.9 76 133-213 83-180 (236)
203 3f6v_A Possible transcriptiona 82.4 0.87 3E-05 33.4 2.9 57 5-67 53-118 (151)
204 2nxc_A L11 mtase, ribosomal pr 82.3 0.58 2E-05 37.1 2.1 77 131-213 120-211 (254)
205 3dr5_A Putative O-methyltransf 82.3 1.2 4.2E-05 34.5 3.9 75 134-213 59-156 (221)
206 2yxd_A Probable cobalt-precorr 82.3 0.72 2.5E-05 33.7 2.5 69 133-209 37-122 (183)
207 3lpm_A Putative methyltransfer 82.3 1.7 6E-05 34.2 4.9 82 132-213 50-169 (259)
208 3jth_A Transcription activator 82.2 0.46 1.6E-05 31.7 1.2 28 20-47 42-69 (98)
209 1u2w_A CADC repressor, cadmium 82.1 0.56 1.9E-05 33.0 1.7 39 9-47 41-89 (122)
210 2hzt_A Putative HTH-type trans 81.9 0.84 2.9E-05 31.2 2.5 49 20-71 33-82 (107)
211 2frn_A Hypothetical protein PH 81.0 1.6 5.4E-05 35.1 4.3 76 132-213 126-218 (278)
212 1xmk_A Double-stranded RNA-spe 80.8 0.53 1.8E-05 30.8 1.1 43 20-69 31-74 (79)
213 1u2z_A Histone-lysine N-methyl 80.8 3.7 0.00013 35.5 6.7 79 132-213 243-352 (433)
214 2o0y_A Transcriptional regulat 80.5 0.37 1.3E-05 38.6 0.3 40 20-68 44-83 (260)
215 3frh_A 16S rRNA methylase; met 80.2 2.1 7.1E-05 34.3 4.6 80 132-213 106-199 (253)
216 1wy7_A Hypothetical protein PH 80.0 3.6 0.00012 30.8 5.8 77 133-210 51-141 (207)
217 1i9g_A Hypothetical protein RV 79.9 1.7 5.7E-05 34.5 4.0 74 133-213 101-196 (280)
218 3pqk_A Biofilm growth-associat 79.7 0.69 2.4E-05 31.1 1.5 28 20-47 42-69 (102)
219 2wte_A CSA3; antiviral protein 79.4 0.57 1.9E-05 37.4 1.1 44 20-71 172-215 (244)
220 1on2_A Transcriptional regulat 79.3 0.49 1.7E-05 33.8 0.6 43 20-71 28-70 (142)
221 2yvl_A TRMI protein, hypotheti 79.3 1.6 5.3E-05 33.8 3.6 74 133-213 93-183 (248)
222 2jsc_A Transcriptional regulat 79.2 0.65 2.2E-05 32.4 1.2 41 7-47 18-67 (118)
223 2plw_A Ribosomal RNA methyltra 79.2 0.89 3.1E-05 34.0 2.1 81 133-213 24-147 (201)
224 1r18_A Protein-L-isoaspartate( 79.1 0.88 3E-05 35.0 2.1 40 166-213 145-187 (227)
225 2y75_A HTH-type transcriptiona 79.0 0.88 3E-05 32.1 1.9 39 20-65 32-70 (129)
226 2a14_A Indolethylamine N-methy 78.8 1.1 3.7E-05 35.5 2.6 46 168-213 135-190 (263)
227 2k02_A Ferrous iron transport 78.6 0.87 3E-05 30.3 1.6 28 20-47 22-49 (87)
228 3l7w_A Putative uncharacterize 78.3 1.2 4.2E-05 30.5 2.4 50 20-71 32-81 (108)
229 2g72_A Phenylethanolamine N-me 78.2 0.73 2.5E-05 37.0 1.4 46 168-213 152-208 (289)
230 2x4h_A Hypothetical protein SS 78.0 0.57 2E-05 33.3 0.6 42 20-71 37-78 (139)
231 3r3h_A O-methyltransferase, SA 77.5 1.8 6.3E-05 33.9 3.5 77 131-213 60-163 (242)
232 1xdz_A Methyltransferase GIDB; 77.5 2.4 8.1E-05 32.9 4.2 76 132-213 71-167 (240)
233 2fsw_A PG_0823 protein; alpha- 75.9 1.3 4.5E-05 30.1 2.0 49 20-71 44-93 (107)
234 3sso_A Methyltransferase; macr 75.7 1.1 3.8E-05 38.6 1.9 80 131-213 216-317 (419)
235 2pbf_A Protein-L-isoaspartate 75.5 1.2 4.2E-05 34.1 2.0 73 133-213 82-186 (227)
236 2ift_A Putative methylase HI07 75.4 1.5 5.1E-05 33.2 2.4 79 132-213 54-156 (201)
237 1yyv_A Putative transcriptiona 75.4 0.72 2.5E-05 32.9 0.5 49 20-71 54-103 (131)
238 2f2e_A PA1607; transcription f 75.4 0.84 2.9E-05 33.2 0.9 48 20-71 43-90 (146)
239 1z91_A Organic hydroperoxide r 75.2 1.7 5.9E-05 30.7 2.6 51 20-73 60-110 (147)
240 2fhp_A Methylase, putative; al 75.1 1.3 4.5E-05 32.5 1.9 80 132-213 45-147 (187)
241 1xn7_A Hypothetical protein YH 75.0 0.93 3.2E-05 29.5 0.9 28 20-47 22-49 (78)
242 3cbg_A O-methyltransferase; cy 74.5 1.4 4.9E-05 34.2 2.1 78 131-213 72-175 (232)
243 3t8r_A Staphylococcus aureus C 73.5 1.7 5.8E-05 31.4 2.2 54 5-65 12-72 (143)
244 2b25_A Hypothetical protein; s 73.5 2.3 7.9E-05 34.9 3.2 74 133-213 107-212 (336)
245 2qvo_A Uncharacterized protein 73.4 1.2 4E-05 29.6 1.2 46 20-71 36-81 (95)
246 1r1u_A CZRA, repressor protein 73.2 0.87 3E-05 30.9 0.5 28 20-47 45-72 (106)
247 2kko_A Possible transcriptiona 72.8 0.42 1.4E-05 32.8 -1.3 28 20-47 44-71 (108)
248 3bja_A Transcriptional regulat 72.4 1.7 5.8E-05 30.3 1.9 49 20-71 53-101 (139)
249 1z7u_A Hypothetical protein EF 71.8 1.3 4.3E-05 30.5 1.1 49 20-71 41-90 (112)
250 3a27_A TYW2, uncharacterized p 71.7 3.5 0.00012 32.9 3.9 75 132-213 120-212 (272)
251 2nnn_A Probable transcriptiona 71.6 1.4 4.9E-05 30.8 1.3 49 20-71 58-106 (140)
252 2bv6_A MGRA, HTH-type transcri 71.5 1.5 5E-05 30.9 1.4 49 20-71 57-105 (142)
253 1ixk_A Methyltransferase; open 71.4 8.9 0.0003 31.2 6.3 81 133-213 120-239 (315)
254 2p41_A Type II methyltransfera 71.3 3.7 0.00013 33.6 4.0 48 166-213 131-184 (305)
255 2esr_A Methyltransferase; stru 71.1 0.77 2.6E-05 33.7 -0.2 77 133-213 33-131 (177)
256 1r1t_A Transcriptional repress 71.0 1.3 4.3E-05 31.2 0.9 37 11-47 47-92 (122)
257 4df3_A Fibrillarin-like rRNA/T 70.9 9.9 0.00034 29.8 6.2 77 133-213 79-175 (233)
258 3bdd_A Regulatory protein MARR 70.4 1.5 5.1E-05 30.7 1.2 49 20-71 51-99 (142)
259 1oyi_A Double-stranded RNA-bin 69.9 2.1 7.1E-05 28.1 1.7 42 20-68 36-77 (82)
260 3cdh_A Transcriptional regulat 69.9 1.7 5.8E-05 31.1 1.5 50 20-72 63-112 (155)
261 3bzb_A Uncharacterized protein 69.8 7.7 0.00026 30.9 5.5 44 166-211 139-191 (281)
262 2aot_A HMT, histamine N-methyl 69.7 1.6 5.6E-05 35.0 1.5 29 183-213 137-165 (292)
263 3g3z_A NMB1585, transcriptiona 69.6 1.7 5.8E-05 30.8 1.4 49 20-71 51-99 (145)
264 3lwf_A LIN1550 protein, putati 69.6 1.5 5.2E-05 32.5 1.1 28 20-47 50-77 (159)
265 3oop_A LIN2960 protein; protei 69.4 1.5 5.1E-05 31.0 1.0 50 20-72 57-106 (143)
266 2fpo_A Methylase YHHF; structu 68.7 2.8 9.5E-05 31.7 2.5 79 132-213 55-153 (202)
267 2pex_A Transcriptional regulat 68.6 1.5 5.2E-05 31.3 1.0 51 20-73 67-117 (153)
268 1bja_A Transcription regulator 68.4 5.5 0.00019 26.9 3.6 57 5-72 20-79 (95)
269 1ylf_A RRF2 family protein; st 68.4 1.7 5.8E-05 31.6 1.2 43 5-47 15-63 (149)
270 2fbi_A Probable transcriptiona 68.4 2 6.7E-05 30.1 1.5 49 20-71 56-104 (142)
271 2nyu_A Putative ribosomal RNA 68.2 2.4 8.3E-05 31.4 2.1 82 132-213 23-138 (196)
272 2eth_A Transcriptional regulat 68.1 2.4 8.3E-05 30.3 2.0 49 20-71 64-112 (154)
273 2cmg_A Spermidine synthase; tr 68.1 4.8 0.00017 32.0 3.9 73 133-213 74-164 (262)
274 2htj_A P fimbrial regulatory p 67.6 1.7 5.6E-05 28.0 0.9 28 20-47 20-47 (81)
275 1xd7_A YWNA; structural genomi 67.6 1.6 5.6E-05 31.5 0.9 42 6-47 11-56 (145)
276 3g89_A Ribosomal RNA small sub 67.5 5.1 0.00018 31.5 3.9 75 133-213 82-177 (249)
277 2h09_A Transcriptional regulat 67.4 2.5 8.6E-05 30.4 2.0 43 20-71 60-102 (155)
278 1jgs_A Multiple antibiotic res 67.4 2 6.9E-05 30.0 1.4 50 20-72 54-103 (138)
279 3bj6_A Transcriptional regulat 67.4 1.6 5.4E-05 31.1 0.8 49 20-71 60-108 (152)
280 2fa5_A Transcriptional regulat 67.3 1.3 4.3E-05 32.1 0.2 49 20-71 69-117 (162)
281 2qlz_A Transcription factor PF 67.1 5.7 0.0002 31.2 4.1 42 5-46 7-57 (232)
282 1qbj_A Protein (double-strande 67.0 4.2 0.00014 26.4 2.8 45 20-71 33-77 (81)
283 3e6m_A MARR family transcripti 67.0 2.4 8.3E-05 30.6 1.8 50 20-72 73-122 (161)
284 2h00_A Methyltransferase 10 do 66.7 2 6.7E-05 33.6 1.3 61 133-193 67-152 (254)
285 2a61_A Transcriptional regulat 66.3 1.6 5.4E-05 30.8 0.6 49 20-71 53-101 (145)
286 3bpv_A Transcriptional regulat 66.2 1.7 6E-05 30.2 0.8 49 20-71 49-97 (138)
287 3k69_A Putative transcription 66.0 2 7E-05 31.8 1.2 55 5-66 13-73 (162)
288 3nrv_A Putative transcriptiona 65.5 1.5 5.1E-05 31.1 0.3 49 20-71 60-108 (148)
289 1s3j_A YUSO protein; structura 65.4 1.7 5.9E-05 31.0 0.7 49 20-71 57-105 (155)
290 3cjn_A Transcriptional regulat 65.3 2.1 7.1E-05 30.9 1.1 49 20-71 72-120 (162)
291 3k0l_A Repressor protein; heli 65.2 2.5 8.5E-05 30.6 1.5 50 20-72 66-115 (162)
292 2rdp_A Putative transcriptiona 65.2 1.9 6.6E-05 30.5 0.9 49 20-71 62-110 (150)
293 1qgp_A Protein (double strande 65.0 1.7 5.9E-05 27.9 0.6 39 20-65 37-75 (77)
294 2nyx_A Probable transcriptiona 65.0 2.3 8E-05 31.0 1.4 49 20-71 65-113 (168)
295 2fu4_A Ferric uptake regulatio 64.7 1.5 5E-05 28.2 0.2 23 25-47 49-71 (83)
296 2gxg_A 146AA long hypothetical 64.7 3.1 0.0001 29.2 1.9 49 20-71 56-104 (146)
297 2dk5_A DNA-directed RNA polyme 64.5 2.5 8.5E-05 28.2 1.3 33 15-47 37-69 (91)
298 2obp_A Putative DNA-binding pr 64.5 1.8 6.2E-05 29.3 0.6 47 20-71 42-88 (96)
299 3hsr_A HTH-type transcriptiona 64.5 1.8 6.1E-05 30.6 0.6 50 20-72 56-105 (140)
300 4hc4_A Protein arginine N-meth 63.9 20 0.00069 30.2 7.2 47 165-213 131-182 (376)
301 1sfx_A Conserved hypothetical 62.9 2 6.9E-05 28.5 0.6 28 20-47 40-67 (109)
302 1lj9_A Transcriptional regulat 62.8 2.8 9.5E-05 29.4 1.4 49 20-71 49-97 (144)
303 3hrs_A Metalloregulator SCAR; 62.6 1.8 6E-05 33.5 0.3 44 20-72 26-69 (214)
304 3dou_A Ribosomal RNA large sub 62.4 1.9 6.4E-05 32.6 0.4 81 132-213 26-132 (191)
305 2qww_A Transcriptional regulat 61.2 2.9 9.9E-05 29.8 1.2 50 20-72 61-112 (154)
306 2hr3_A Probable transcriptiona 61.0 2.9 0.0001 29.4 1.3 49 20-71 56-104 (147)
307 3bro_A Transcriptional regulat 60.8 2.6 8.8E-05 29.5 0.9 49 20-71 56-104 (141)
308 2h1r_A Dimethyladenosine trans 60.0 11 0.00039 30.4 4.8 72 132-204 43-128 (299)
309 3eco_A MEPR; mutlidrug efflux 59.7 2.8 9.6E-05 29.2 0.9 50 20-72 53-102 (139)
310 3tma_A Methyltransferase; thum 59.7 8.7 0.0003 31.7 4.1 82 132-213 204-310 (354)
311 3ech_A MEXR, multidrug resista 59.4 1.7 5.7E-05 30.7 -0.3 49 20-71 57-105 (142)
312 2p4w_A Transcriptional regulat 58.6 5.2 0.00018 30.7 2.3 62 6-68 11-81 (202)
313 4esf_A PADR-like transcription 58.6 4.3 0.00015 28.2 1.7 48 24-72 40-87 (117)
314 2fxa_A Protease production reg 58.4 3 0.0001 31.9 0.9 50 20-72 68-117 (207)
315 3evz_A Methyltransferase; NYSG 58.4 5.9 0.0002 30.1 2.7 82 132-213 56-172 (230)
316 1i1n_A Protein-L-isoaspartate 58.3 13 0.00044 28.1 4.6 73 133-213 79-175 (226)
317 1fx7_A Iron-dependent represso 58.1 2.6 9E-05 32.8 0.6 44 20-72 30-73 (230)
318 4hbl_A Transcriptional regulat 57.5 2 6.9E-05 30.6 -0.2 49 20-71 61-109 (149)
319 4aik_A Transcriptional regulat 57.3 4.2 0.00014 29.3 1.5 50 20-72 52-101 (151)
320 2pg4_A Uncharacterized protein 57.2 1.3 4.5E-05 29.3 -1.2 47 20-71 36-83 (95)
321 2d1h_A ST1889, 109AA long hypo 57.0 2.7 9.3E-05 27.8 0.4 28 20-47 42-69 (109)
322 2frh_A SARA, staphylococcal ac 56.9 3.2 0.00011 28.9 0.8 49 20-71 59-107 (127)
323 3tgn_A ADC operon repressor AD 56.8 2.7 9.2E-05 29.6 0.4 49 20-71 57-105 (146)
324 2fbh_A Transcriptional regulat 56.7 3.9 0.00013 28.6 1.3 49 20-71 58-106 (146)
325 4gqb_A Protein arginine N-meth 56.7 11 0.00038 34.2 4.5 22 165-186 410-433 (637)
326 3f3x_A Transcriptional regulat 56.6 2.8 9.5E-05 29.5 0.5 50 20-72 56-105 (144)
327 3ajd_A Putative methyltransfer 55.5 9.4 0.00032 30.3 3.5 81 133-213 85-204 (274)
328 3gru_A Dimethyladenosine trans 55.4 16 0.00055 29.6 4.9 72 132-204 51-136 (295)
329 3cta_A Riboflavin kinase; stru 55.4 3.3 0.00011 32.2 0.7 47 20-72 33-79 (230)
330 2pn6_A ST1022, 150AA long hypo 54.8 2.8 9.4E-05 30.1 0.2 28 20-47 23-50 (150)
331 2qq9_A Diphtheria toxin repres 54.5 2.9 0.0001 32.5 0.3 44 20-72 30-73 (226)
332 4b8x_A SCO5413, possible MARR- 54.4 3.5 0.00012 29.5 0.7 49 20-71 57-105 (147)
333 1qam_A ERMC' methyltransferase 54.4 18 0.00062 28.1 5.0 71 133-203 32-115 (244)
334 2cfx_A HTH-type transcriptiona 54.2 3.5 0.00012 29.5 0.6 28 20-47 25-52 (144)
335 3fm5_A Transcriptional regulat 54.2 2.8 9.7E-05 29.7 0.2 50 20-72 60-109 (150)
336 2lkp_A Transcriptional regulat 53.7 2.5 8.6E-05 29.0 -0.2 28 20-47 51-78 (119)
337 2w25_A Probable transcriptiona 53.4 3.6 0.00012 29.6 0.6 28 20-47 27-54 (150)
338 3f8b_A Transcriptional regulat 52.5 14 0.00048 25.4 3.6 48 23-71 42-89 (116)
339 3s2w_A Transcriptional regulat 52.5 4.1 0.00014 29.2 0.8 50 20-72 70-119 (159)
340 3jw4_A Transcriptional regulat 52.4 3.7 0.00013 29.0 0.6 49 20-71 63-111 (148)
341 3boq_A Transcriptional regulat 52.2 3.1 0.00011 29.8 0.1 49 20-71 68-116 (160)
342 3elk_A Putative transcriptiona 52.1 4.1 0.00014 28.3 0.7 47 26-73 45-91 (117)
343 2jt1_A PEFI protein; solution 51.6 3.8 0.00013 26.4 0.4 28 20-47 30-57 (77)
344 1rjd_A PPM1P, carboxy methyl t 50.9 73 0.0025 26.1 8.3 83 130-212 96-225 (334)
345 2dbb_A Putative HTH-type trans 50.7 4.4 0.00015 29.1 0.7 28 20-47 29-56 (151)
346 2oxt_A Nucleoside-2'-O-methylt 50.2 7 0.00024 31.2 1.9 46 167-213 123-176 (265)
347 3deu_A Transcriptional regulat 50.1 4.7 0.00016 29.4 0.8 49 20-71 74-122 (166)
348 3u2r_A Regulatory protein MARR 50.1 4.3 0.00015 29.5 0.6 50 20-72 68-117 (168)
349 2p5v_A Transcriptional regulat 49.2 4.5 0.00016 29.5 0.6 28 20-47 30-57 (162)
350 3nqo_A MARR-family transcripti 48.8 5.9 0.0002 29.6 1.2 50 20-72 63-112 (189)
351 2yxl_A PH0851 protein, 450AA l 48.6 47 0.0016 28.4 7.1 81 133-213 261-382 (450)
352 2p8t_A Hypothetical protein PH 48.6 3.8 0.00013 31.6 0.1 42 20-71 36-77 (200)
353 3fut_A Dimethyladenosine trans 48.5 51 0.0017 26.2 6.8 71 134-205 49-133 (271)
354 3o4f_A Spermidine synthase; am 48.4 27 0.00093 28.4 5.2 80 133-213 85-191 (294)
355 1ku9_A Hypothetical protein MJ 47.8 7.1 0.00024 27.3 1.4 28 20-47 47-74 (152)
356 3hhh_A Transcriptional regulat 47.3 12 0.00042 25.8 2.6 48 24-72 42-89 (116)
357 2ia0_A Putative HTH-type trans 47.2 5.1 0.00017 29.7 0.6 28 20-47 37-64 (171)
358 2zkz_A Transcriptional repress 47.1 5.3 0.00018 26.6 0.6 38 9-47 26-73 (99)
359 3u1d_A Uncharacterized protein 46.9 9.3 0.00032 28.0 1.9 54 20-73 51-107 (151)
360 3r0a_A Putative transcriptiona 46.2 5 0.00017 28.0 0.4 28 20-47 48-75 (123)
361 2o03_A Probable zinc uptake re 46.1 11 0.00037 26.5 2.2 25 24-48 41-65 (131)
362 1q1h_A TFE, transcription fact 45.8 7 0.00024 26.3 1.1 28 20-47 39-66 (110)
363 2esh_A Conserved hypothetical 45.5 8.8 0.0003 26.4 1.6 45 26-72 46-91 (118)
364 4esb_A Transcriptional regulat 45.5 20 0.00067 24.6 3.4 48 24-72 38-85 (115)
365 2cg4_A Regulatory protein ASNC 45.3 4.5 0.00015 29.1 0.0 28 20-47 28-55 (152)
366 2o0m_A Transcriptional regulat 44.8 4.6 0.00016 33.5 0.0 28 20-47 40-67 (345)
367 2igt_A SAM dependent methyltra 44.7 22 0.00076 29.1 4.2 80 133-213 155-265 (332)
368 2yx1_A Hypothetical protein MJ 44.5 20 0.00069 29.4 3.9 75 132-213 196-284 (336)
369 2e1c_A Putative HTH-type trans 44.5 5 0.00017 29.8 0.2 28 20-47 47-74 (171)
370 2cyy_A Putative HTH-type trans 44.3 4 0.00014 29.4 -0.4 28 20-47 27-54 (151)
371 2k4b_A Transcriptional regulat 43.8 9.1 0.00031 25.8 1.4 28 20-47 55-86 (99)
372 1uly_A Hypothetical protein PH 43.6 7.8 0.00027 29.4 1.2 41 7-47 17-66 (192)
373 3iht_A S-adenosyl-L-methionine 43.5 16 0.00054 27.2 2.7 79 132-210 41-133 (174)
374 1yub_A Ermam, rRNA methyltrans 41.7 26 0.00088 27.0 4.0 71 133-203 31-114 (245)
375 2xvc_A ESCRT-III, SSO0910; cel 41.4 6.1 0.00021 24.0 0.2 27 20-46 31-57 (59)
376 1i1g_A Transcriptional regulat 41.4 4.7 0.00016 28.4 -0.4 28 20-47 24-51 (141)
377 2fe3_A Peroxide operon regulat 41.1 35 0.0012 24.2 4.3 24 24-47 52-75 (145)
378 3i4p_A Transcriptional regulat 41.0 6.3 0.00021 28.8 0.2 28 20-47 23-50 (162)
379 3ic7_A Putative transcriptiona 39.9 23 0.0008 24.6 3.1 28 20-47 41-68 (126)
380 2wa2_A Non-structural protein 39.9 11 0.00037 30.2 1.5 46 167-213 131-184 (276)
381 1sqg_A SUN protein, FMU protei 39.7 35 0.0012 28.9 4.8 81 133-213 248-367 (429)
382 1cf7_A Protein (transcription 39.6 7.8 0.00027 24.9 0.5 28 20-47 36-64 (76)
383 2frx_A Hypothetical protein YE 39.6 76 0.0026 27.5 7.0 82 132-213 118-239 (479)
384 3kp7_A Transcriptional regulat 39.4 6.1 0.00021 28.0 -0.1 49 20-71 57-107 (151)
385 2pjp_A Selenocysteine-specific 38.9 12 0.00042 25.8 1.5 39 20-67 26-64 (121)
386 1xma_A Predicted transcription 38.9 18 0.00061 26.0 2.4 47 24-71 72-118 (145)
387 2qfm_A Spermine synthase; sper 38.6 17 0.00058 30.6 2.5 81 133-213 190-307 (364)
388 2co5_A Viral protein F93; vira 36.8 33 0.0011 22.9 3.4 42 24-71 40-81 (99)
389 3mwm_A ZUR, putative metal upt 35.7 36 0.0012 24.0 3.7 25 23-47 43-67 (139)
390 2yu3_A DNA-directed RNA polyme 35.5 7.9 0.00027 26.0 0.0 29 20-48 59-87 (95)
391 3u5c_Z RP45, S31, YS23, 40S ri 35.0 18 0.00062 24.9 1.8 28 20-47 65-92 (108)
392 3m6w_A RRNA methylase; rRNA me 35.0 17 0.00059 31.5 2.1 80 133-213 103-222 (464)
393 2as0_A Hypothetical protein PH 34.3 17 0.00057 30.5 1.9 83 131-213 217-328 (396)
394 3aaf_A Werner syndrome ATP-dep 34.1 17 0.00058 25.8 1.6 45 25-73 64-108 (134)
395 2lnb_A Z-DNA-binding protein 1 33.9 16 0.00056 23.5 1.3 36 20-64 40-75 (80)
396 3ke2_A Uncharacterized protein 33.1 25 0.00084 24.5 2.2 39 8-46 26-65 (117)
397 2fbk_A Transcriptional regulat 32.8 5.1 0.00018 29.5 -1.4 49 20-71 92-140 (181)
398 3b02_A Transcriptional regulat 32.3 17 0.00058 26.6 1.5 28 20-47 145-172 (195)
399 4g6q_A Putative uncharacterize 31.9 16 0.00054 27.3 1.2 59 11-70 24-92 (182)
400 3ri2_A Transcriptional regulat 31.7 43 0.0015 23.2 3.4 47 24-72 48-94 (123)
401 2xyq_A Putative 2'-O-methyl tr 31.6 24 0.00083 28.5 2.3 47 166-213 105-164 (290)
402 3ua3_A Protein arginine N-meth 31.4 58 0.002 30.1 5.0 112 100-213 377-527 (745)
403 1mzb_A Ferric uptake regulatio 31.2 45 0.0015 23.3 3.5 24 24-47 49-72 (136)
404 3qph_A TRMB, A global transcri 31.0 15 0.0005 30.5 0.9 42 20-68 38-79 (342)
405 2zfw_A PEX; five alpha-helices 31.0 49 0.0017 23.8 3.7 49 23-72 73-122 (148)
406 3k6r_A Putative transferase PH 30.8 43 0.0015 26.8 3.7 56 133-188 127-199 (278)
407 2jjq_A Uncharacterized RNA met 30.6 56 0.0019 27.8 4.6 56 131-187 290-359 (425)
408 1hsj_A Fusion protein consisti 30.4 25 0.00087 30.0 2.4 49 20-71 426-474 (487)
409 3ftd_A Dimethyladenosine trans 30.3 64 0.0022 25.1 4.6 72 132-203 32-116 (249)
410 3k2z_A LEXA repressor; winged 29.9 12 0.00043 28.0 0.3 28 20-47 30-57 (196)
411 2dql_A PEX protein; circadian 29.6 56 0.0019 22.2 3.7 48 23-71 51-99 (115)
412 1sfu_A 34L protein; protein/Z- 29.4 36 0.0012 21.7 2.4 28 20-47 35-62 (75)
413 2gau_A Transcriptional regulat 29.0 22 0.00075 26.7 1.6 28 20-47 186-213 (232)
414 2ih2_A Modification methylase 29.0 48 0.0016 27.5 3.9 55 133-187 41-104 (421)
415 3eyy_A Putative iron uptake re 28.9 46 0.0016 23.6 3.2 25 23-47 47-71 (145)
416 3tm4_A TRNA (guanine N2-)-meth 28.7 75 0.0026 26.2 5.0 80 131-210 217-321 (373)
417 3dv8_A Transcriptional regulat 28.6 17 0.0006 26.9 0.9 28 20-47 175-202 (220)
418 3tqs_A Ribosomal RNA small sub 28.5 1.5E+02 0.0053 23.0 6.6 73 132-208 30-118 (255)
419 4a6d_A Hydroxyindole O-methylt 28.4 15 0.00051 30.3 0.6 43 122-164 118-162 (353)
420 1wxx_A TT1595, hypothetical pr 28.2 33 0.0011 28.5 2.7 81 133-213 211-318 (382)
421 2zcw_A TTHA1359, transcription 28.0 18 0.00062 26.6 0.9 28 20-47 152-179 (202)
422 2ek5_A Predicted transcription 27.9 24 0.00081 24.7 1.5 28 20-47 34-61 (129)
423 1zyb_A Transcription regulator 27.8 21 0.0007 27.0 1.2 28 20-47 192-219 (232)
424 1yg2_A Gene activator APHA; vi 27.3 49 0.0017 24.3 3.2 46 23-70 32-78 (179)
425 1okr_A MECI, methicillin resis 27.2 8.8 0.0003 26.1 -0.9 28 20-47 30-61 (123)
426 2w57_A Ferric uptake regulatio 27.0 52 0.0018 23.5 3.3 24 24-47 48-71 (150)
427 3tqn_A Transcriptional regulat 26.9 17 0.00059 24.7 0.6 28 20-47 39-66 (113)
428 2xzm_8 RPS25E,; ribosome, tran 26.9 15 0.0005 26.6 0.2 28 20-47 69-96 (143)
429 3p9c_A Caffeic acid O-methyltr 26.8 14 0.00047 30.7 0.0 41 122-163 142-182 (364)
430 4ev0_A Transcription regulator 26.7 19 0.00066 26.6 0.9 28 20-47 169-196 (216)
431 3reo_A (ISO)eugenol O-methyltr 26.7 15 0.0005 30.5 0.2 41 122-163 144-184 (368)
432 3e97_A Transcriptional regulat 26.5 19 0.00067 27.0 0.9 28 20-47 181-208 (231)
433 3la7_A Global nitrogen regulat 26.5 20 0.00067 27.4 0.9 28 20-47 199-226 (243)
434 3id6_C Fibrillarin-like rRNA/T 26.4 1.3E+02 0.0045 23.1 5.7 76 133-213 78-174 (232)
435 3dkw_A DNR protein; CRP-FNR, H 26.3 20 0.0007 26.7 1.0 28 20-47 184-211 (227)
436 2qc0_A Uncharacterized protein 25.9 31 0.001 28.9 2.1 49 20-74 317-365 (373)
437 2b0l_A GTP-sensing transcripti 25.8 17 0.0006 24.4 0.4 28 20-47 49-76 (102)
438 1z6r_A MLC protein; transcript 25.5 25 0.00085 29.4 1.5 40 8-47 14-63 (406)
439 1uwv_A 23S rRNA (uracil-5-)-me 25.5 1.4E+02 0.0048 25.1 6.3 72 132-208 287-378 (433)
440 3uzu_A Ribosomal RNA small sub 25.3 43 0.0015 26.7 2.8 77 132-208 43-136 (279)
441 2w48_A Sorbitol operon regulat 24.4 22 0.00075 28.9 0.9 28 20-47 27-55 (315)
442 4fx0_A Probable transcriptiona 24.3 16 0.00054 26.0 -0.0 48 20-71 58-105 (148)
443 3d0s_A Transcriptional regulat 24.1 23 0.00079 26.5 0.9 28 20-47 183-210 (227)
444 1p4x_A Staphylococcal accessor 24.0 26 0.00088 27.6 1.2 49 20-71 180-228 (250)
445 3c0k_A UPF0064 protein YCCW; P 23.7 56 0.0019 27.2 3.3 82 131-213 220-332 (396)
446 3opn_A Putative hemolysin; str 23.6 61 0.0021 24.8 3.3 14 200-213 117-130 (232)
447 3e6c_C CPRK, cyclic nucleotide 23.5 24 0.00081 27.0 0.9 28 20-47 183-210 (250)
448 1z05_A Transcriptional regulat 23.5 27 0.00094 29.5 1.3 41 7-47 36-86 (429)
449 2gqq_A Leucine-responsive regu 23.0 17 0.00057 26.4 -0.1 27 20-46 33-59 (163)
450 1o5l_A Transcriptional regulat 22.9 18 0.0006 27.0 0.0 28 20-47 170-197 (213)
451 3b5i_A S-adenosyl-L-methionine 22.9 79 0.0027 26.5 4.0 46 168-213 134-218 (374)
452 4ham_A LMO2241 protein; struct 22.9 24 0.00084 24.6 0.8 28 20-47 44-71 (134)
453 1lva_A Selenocysteine-specific 22.7 33 0.0011 27.0 1.6 38 20-66 163-200 (258)
454 2hoe_A N-acetylglucosamine kin 22.7 16 0.00053 30.5 -0.4 43 5-47 15-66 (380)
455 2xig_A Ferric uptake regulatio 22.5 62 0.0021 23.1 2.9 25 24-48 57-81 (150)
456 3l9f_A Putative uncharacterize 22.4 63 0.0022 24.6 3.1 44 24-69 67-111 (204)
457 3neu_A LIN1836 protein; struct 22.3 24 0.00081 24.5 0.6 28 20-47 43-70 (125)
458 2bgc_A PRFA; bacterial infecti 22.1 33 0.0011 25.9 1.5 28 20-47 175-203 (238)
459 3by6_A Predicted transcription 21.9 24 0.00083 24.5 0.6 28 20-47 41-68 (126)
460 1v4r_A Transcriptional repress 21.9 14 0.00047 24.5 -0.7 28 20-47 41-68 (102)
461 3lmm_A Uncharacterized protein 21.5 25 0.00087 31.4 0.7 41 20-70 450-495 (583)
462 2fmy_A COOA, carbon monoxide o 20.5 22 0.00076 26.5 0.1 27 20-46 173-199 (220)
463 2ijl_A AGR_C_4647P, molybdenum 20.4 29 0.001 24.6 0.8 48 20-72 44-94 (135)
464 2e1n_A PEX, period extender; c 20.4 88 0.003 22.1 3.3 48 23-71 63-111 (138)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.5e-35 Score=254.39 Aligned_cols=205 Identities=13% Similarity=0.244 Sum_probs=158.8
Q ss_pred hhhHHHHHHHHhCchhHH-----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 2 VLPMTMKTAIQLGVLEIM-----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
+.+++|++|++|||||+| ||+++|++++.++|+||+|++.|+|++..+. .+++|++|++|+.+
T Consensus 20 ~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~------~~~~y~~t~~s~~~ 93 (353)
T 4a6d_A 20 MVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRG------GKAFYRNTELSSDY 93 (353)
T ss_dssp HHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccC------ccceeeCCHHHHHH
Confidence 678999999999999999 8899999999999999999999999875321 15789999999864
Q ss_pred -CCCCCCCchhhHHhhhhch-----------------hhhhhhc-ccCCcchhhhcchhhHhhHHhhhhhcc--HHHHHh
Q 042599 71 -FPNEDGVSLAPTLLIIQDK-----------------VNMDSWA-CKYTQHSYLCMKDALLEGFINTLNRYY--LKNALL 129 (214)
Q Consensus 71 -~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~ 129 (214)
..+++ .++++++.+.... .+...++ +..++|+++.++|+..+.|+.+|.... ....+.
T Consensus 94 l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~ 172 (353)
T 4a6d_A 94 LTTVSP-TSQCSMLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVL 172 (353)
T ss_dssp HSTTST-TCCHHHHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hhcCCc-hHHHHHHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 5666665542211 1122222 234689999999999999999996521 112222
Q ss_pred -----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc-----CCCceEEecCCCCcc-cCccceeeeeh
Q 042599 130 -----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH-----NHTVVEHVSGHMFIE-VPNGQALFMKW 189 (214)
Q Consensus 130 -----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~-----~~~rv~~~~gDff~~-~P~~d~y~l~~ 189 (214)
.+...++|||| |..+.++++++|++ +.+++.+.. ..+||++++||||++ .|.+|+|++++
T Consensus 173 ~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~ 252 (353)
T 4a6d_A 173 TAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILAR 252 (353)
T ss_dssp HSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEES
T ss_pred HhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeee
Confidence 23356899998 77788999999976 566665542 257999999999965 45689999999
Q ss_pred hccCCChHHHHHHHHHhHHhcCCC
Q 042599 190 ILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
|||||+|++|++||++|+++|+||
T Consensus 253 vlh~~~d~~~~~iL~~~~~al~pg 276 (353)
T 4a6d_A 253 VLHDWADGKCSHLLERIYHTCKPG 276 (353)
T ss_dssp SGGGSCHHHHHHHHHHHHHHCCTT
T ss_pred ecccCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999998
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=2.7e-33 Score=241.19 Aligned_cols=211 Identities=39% Similarity=0.643 Sum_probs=166.1
Q ss_pred ChhhHHHHHHHHhCchhHH------------cCCCCCC--Chh---hHHHHHHHHhcCcceeeecccccCCCccccceec
Q 042599 1 AVLPMTMKTAIQLGVLEIM------------LPKNNKE--TPI---ILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGL 63 (214)
Q Consensus 1 ~~~~~~L~~a~~lgifd~L------------LA~~~~~--~~~---~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~ 63 (214)
++.+++|++|++|||||+| ||+++|+ +++ .|+|+||+|++.|+|+++..++ ++|..+++|++
T Consensus 31 ~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~g~~~~~y~~ 109 (364)
T 3p9c_A 31 SVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEG-KDGRLSRSYGA 109 (364)
T ss_dssp THHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEEC-SSSCEEEEEEE
T ss_pred HHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEecccc-CCCCcCCEEec
Confidence 3678999999999999999 8889998 888 9999999999999999863111 11111478999
Q ss_pred chhccccCCCCCCCchhhHHhhhhchhhhhhhcc----------------cCCcchhhhcchhhHhhHHhhhhhcc---H
Q 042599 64 ASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWAC----------------KYTQHSYLCMKDALLEGFINTLNRYY---L 124 (214)
Q Consensus 64 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~~~---~ 124 (214)
|+.|+.|+.+..+.++++++.+..++.++.+|.. +.++|+|+.++|+..+.|+.+|..+. .
T Consensus 110 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 189 (364)
T 3p9c_A 110 APVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIIT 189 (364)
T ss_dssp CGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHH
Confidence 9999999877644678887765544444444421 35789999999999999999996521 1
Q ss_pred HHHHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeehh
Q 042599 125 KNALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWI 190 (214)
Q Consensus 125 ~~~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~I 190 (214)
...+. .+...++|||| |..+..+++++|++ +.+++.+.. .++|+++.||||+++|++|+|++++|
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~D~~~~~p~~D~v~~~~v 268 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-FPGVTHVGGDMFKEVPSGDTILMKWI 268 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCCSEEEEESC
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh-cCCeEEEeCCcCCCCCCCCEEEehHH
Confidence 11121 23456899998 67777899999975 556655544 47999999999999998899999999
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
||+|+|++|++||++++++|+||
T Consensus 269 lh~~~d~~~~~~L~~~~~~L~pg 291 (364)
T 3p9c_A 269 LHDWSDQHCATLLKNCYDALPAH 291 (364)
T ss_dssp GGGSCHHHHHHHHHHHHHHSCTT
T ss_pred hccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.97 E-value=4.3e-31 Score=227.69 Aligned_cols=211 Identities=40% Similarity=0.640 Sum_probs=162.6
Q ss_pred ChhhHHHHHHHHhCchhHH--------------cCCCCC-CChh---hHHHHHHHHhcCcceeeecccccCCCcccccee
Q 042599 1 AVLPMTMKTAIQLGVLEIM--------------LPKNNK-ETPI---ILDRMLRLLASYSFLTCNLATNIKDGSAQRLYG 62 (214)
Q Consensus 1 ~~~~~~L~~a~~lgifd~L--------------LA~~~~-~~~~---~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~ 62 (214)
.+.+++|++|++|||||+| ||+++| .++. .|+|+||+|++.|+|+++..+. ++|..+++|+
T Consensus 32 ~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~g~~~~~y~ 110 (368)
T 3reo_A 32 AVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLREL-PSGKVERLYG 110 (368)
T ss_dssp THHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEEC-TTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccC-CCCcccceeC
Confidence 3678999999999999986 677887 4665 9999999999999999862100 1111137899
Q ss_pred cchhccccCCCCCCCchhhHHhhhhchhhhhhhcc----------------cCCcchhhhcchhhHhhHHhhhhhcc--H
Q 042599 63 LASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWAC----------------KYTQHSYLCMKDALLEGFINTLNRYY--L 124 (214)
Q Consensus 63 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~~~--~ 124 (214)
+|+.|+.|+.+..+.++++++.+..++.++.+|.. +.++|+|+..+|+..+.|+.+|..+. .
T Consensus 111 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 190 (368)
T 3reo_A 111 LAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTIT 190 (368)
T ss_dssp ECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhH
Confidence 99999998876544678887765544444444421 35789999999999999999996521 1
Q ss_pred HH-HHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeeh
Q 042599 125 KN-ALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKW 189 (214)
Q Consensus 125 ~~-~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~ 189 (214)
.. .+. .+...++|||| |..+..+++++|++ +.+++.+.. .++|+++.||||+++|++|+|++++
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~p~~D~v~~~~ 269 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA-FSGVEHLGGDMFDGVPKGDAIFIKW 269 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCCSEEEEES
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh-cCCCEEEecCCCCCCCCCCEEEEec
Confidence 12 221 12356899998 67777899999975 455555443 4789999999999999889999999
Q ss_pred hccCCChHHHHHHHHHhHHhcCCC
Q 042599 190 ILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
|||+|+|++|++||++++++|+||
T Consensus 270 vlh~~~~~~~~~~l~~~~~~L~pg 293 (368)
T 3reo_A 270 ICHDWSDEHCLKLLKNCYAALPDH 293 (368)
T ss_dssp CGGGBCHHHHHHHHHHHHHHSCTT
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999997
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.97 E-value=3e-30 Score=220.62 Aligned_cols=201 Identities=16% Similarity=0.209 Sum_probs=159.6
Q ss_pred hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
+.+++|+++++|||||+| ||+++|++++.|+|+||+|++.|+|++. +++|++|+.|+.|.+
T Consensus 34 ~~~~~l~~a~~lglf~~l~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~----------~~~y~~t~~s~~l~~ 103 (348)
T 3lst_A 34 TYAAALRAAAAVGVADHLVDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRES----------DGRFALTDKGAALRS 103 (348)
T ss_dssp HHHHHHHHHHHHTGGGGGTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECTTTGGGST
T ss_pred HHHHHHHHHHHcCchhHhhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEec----------CCEEecCHHHHHHhc
Confidence 568999999999999999 9999999999999999999999999984 789999999999987
Q ss_pred CCCCCchhhHHhhhhchhhhhhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc---HHHHHh----
Q 042599 73 NEDGVSLAPTLLIIQDKVNMDSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY---LKNALL---- 129 (214)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~---~~~~~~---- 129 (214)
+++ .++++++.+..++.++.+|. + +.++|+|+.++|+..+.|+.+|.... ....+.
T Consensus 104 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~ 182 (348)
T 3lst_A 104 DSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGDF 182 (348)
T ss_dssp TSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSCC
T ss_pred CCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCCc
Confidence 765 56777665433332333331 1 34689999999999999999996521 112222
Q ss_pred cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhc----cCCCceEEecCCCCcccCccceeeeehhccCCCh
Q 042599 130 EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSM----HNHTVVEHVSGHMFIEVPNGQALFMKWILSDWDD 196 (214)
Q Consensus 130 ~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~----~~~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~d 196 (214)
.+...++|||| |..+..+++++|+. +.++.... ...+||+++.+|+|+++|..|+|++++|||+|+|
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d 262 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGD 262 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCH
Confidence 23356899997 66777889999975 44444221 1246899999999999996699999999999999
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++|.++|++++++|+||
T Consensus 263 ~~~~~~L~~~~~~Lkpg 279 (348)
T 3lst_A 263 EDSVRILTNCRRVMPAH 279 (348)
T ss_dssp HHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999997
No 5
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.97 E-value=6.1e-30 Score=217.17 Aligned_cols=203 Identities=17% Similarity=0.206 Sum_probs=159.4
Q ss_pred ChhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 1 AVLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 1 ~~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
++.+++|++|++|||||+| ||+++|++++.++|+||+|++.|+|+++ + +++|++|++|+.|.
T Consensus 16 ~~~~~~l~~a~~lglf~~l~~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~-----~----~~~y~~t~~s~~l~ 86 (332)
T 3i53_A 16 LATPMAVRVAATLRVADHIAAGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD-----G----QGVYGLTEFGEQLR 86 (332)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----T----TSBEEECTTGGGGS
T ss_pred hHHHHHHHHHHHcChHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEec-----C----CCeEEcCHhHHHHh
Confidence 3678999999999999999 9999999999999999999999999986 2 68999999999997
Q ss_pred CCCCCCchhhHHhhhhchhhh-hhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc--HHHHHhc--
Q 042599 72 PNEDGVSLAPTLLIIQDKVNM-DSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY--LKNALLE-- 130 (214)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~~-- 130 (214)
.+++ .++++++.+..++..+ ..|. + +.++|+|+.++|+..+.|+.+|.... ....+..
T Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~ 165 (332)
T 3i53_A 87 DDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY 165 (332)
T ss_dssp TTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSS
T ss_pred cCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhC
Confidence 7665 4666665543222111 2221 1 34579999999999999999996521 1111111
Q ss_pred ---CCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccC-ccceeeeehhc
Q 042599 131 ---GSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVP-NGQALFMKWIL 191 (214)
Q Consensus 131 ---g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P-~~d~y~l~~IL 191 (214)
+...++|+|| |..+..+++++|+. +.+++.+.. ..+||+++.+|+++++| ..|+|++++||
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vl 245 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVL 245 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCG
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhh
Confidence 2346899998 66677888999864 455555542 24789999999999999 56999999999
Q ss_pred cCCChHHHHHHHHHhHHhcCCC
Q 042599 192 SDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 192 Hdw~d~~~~~IL~~~~~Al~pg 213 (214)
|+|+|+++.+||++++++|+||
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pg 267 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSG 267 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999997
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.96 E-value=7.1e-30 Score=220.08 Aligned_cols=202 Identities=17% Similarity=0.264 Sum_probs=160.9
Q ss_pred hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccc-eecchhccccC
Q 042599 2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRL-YGLASVSRYFF 71 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~-y~~t~~s~~l~ 71 (214)
+.+++|+++++|||||+| ||+++|++++.|+|+||+|++.|+|+++ + +++ |++|++|+.|.
T Consensus 50 ~~~~~l~~a~~lglf~~l~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~-----~----~~~~y~~t~~s~~L~ 120 (369)
T 3gwz_A 50 WKARAIHVAVELGVPELLQEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDL-----G----HDDLFAQNALSAVLL 120 (369)
T ss_dssp HHHHHHHHHHHHTTGGGGTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEC-----S----STTEEECCHHHHTTS
T ss_pred HHHHHHHHHHHCChhhhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEe-----C----CCceEecCHHHHHHh
Confidence 568999999999999999 9999999999999999999999999996 2 678 99999999987
Q ss_pred CCCCCCchhhHHhhhhchhhhhhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc--HHHHHh----
Q 042599 72 PNEDGVSLAPTLLIIQDKVNMDSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY--LKNALL---- 129 (214)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~~---- 129 (214)
++++ .++++++.+..++..+..|. + +.++|+|+.++|+..+.|+.+|.... ....+.
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~ 199 (369)
T 3gwz_A 121 PDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD 199 (369)
T ss_dssp CCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC
Confidence 7665 56776666544432223331 1 34689999999999999999996521 112221
Q ss_pred -cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhcc
Q 042599 130 -EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILS 192 (214)
Q Consensus 130 -~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILH 192 (214)
.+...++|+|| |..+..+++++|++ +.+++.+.. ..++|+++.+||++++|. .|+|++++|||
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh 279 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLH 279 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGG
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhc
Confidence 13356999998 66777889999964 455555442 247899999999999994 69999999999
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
+|+|++|++||++++++|+||
T Consensus 280 ~~~d~~~~~~L~~~~~~L~pg 300 (369)
T 3gwz_A 280 DWDDDDVVRILRRIATAMKPD 300 (369)
T ss_dssp GSCHHHHHHHHHHHHTTCCTT
T ss_pred cCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999997
No 7
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.96 E-value=7e-29 Score=213.41 Aligned_cols=199 Identities=11% Similarity=0.128 Sum_probs=153.8
Q ss_pred hhhHHHHHHHHhCchhHH-----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 2 VLPMTMKTAIQLGVLEIM-----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
+.+++|+++++|||||+| ||+++|++++.|+|+||+|++.|+|+++ +++|++|+.|+.|
T Consensus 27 ~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~----------~~~y~~t~~s~~L 96 (363)
T 3dp7_A 27 VVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE----------EDRYVLAKAGWFL 96 (363)
T ss_dssp HHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE----------TTEEEECHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec----------CCEEecccchHHh
Confidence 468899999999999999 8889999999999999999999999885 6899999999988
Q ss_pred CCCCCCCchhhHHhh-----------------hhchhhhhhhcccCCcchhhhcchhhHhh----HHhhhhhccHHHHH-
Q 042599 71 FPNEDGVSLAPTLLI-----------------IQDKVNMDSWACKYTQHSYLCMKDALLEG----FINTLNRYYLKNAL- 128 (214)
Q Consensus 71 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----f~~~m~~~~~~~~~- 128 (214)
+++++. +. .+.+ ...+.+...+++..++|+++.++|+..++ |+.+|........+
T Consensus 97 ~~~~~~-~~--~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~ 173 (363)
T 3dp7_A 97 LNDKMA-RV--NMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALE 173 (363)
T ss_dssp HHCHHH-HH--HHHHHHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hCCCcc-cc--hheeecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 876541 11 1110 11223334444457899999999988773 77777542222222
Q ss_pred --h-cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcc---cCc-cceee
Q 042599 129 --L-EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIE---VPN-GQALF 186 (214)
Q Consensus 129 --~-~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~---~P~-~d~y~ 186 (214)
. .+...++|||| |..+..+++++|++ +.+++.+.. ..+||+++.+||+++ +|+ .|+|+
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~ 253 (363)
T 3dp7_A 174 IVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVW 253 (363)
T ss_dssp HHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred HhcccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEE
Confidence 2 35567999998 66777889999964 555655443 136899999999974 674 59999
Q ss_pred eehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 187 MKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 187 l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+++|||+|+|+++.+||++++++|+||
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pg 280 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKD 280 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999997
No 8
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.96 E-value=2.7e-28 Score=209.21 Aligned_cols=209 Identities=22% Similarity=0.360 Sum_probs=160.0
Q ss_pred hhhHHHHHHHHhCchhHH-----------cCCCCCC---ChhhHHHHHHHHhcCcceeeeccc-ccCCCccccceecchh
Q 042599 2 VLPMTMKTAIQLGVLEIM-----------LPKNNKE---TPIILDRMLRLLASYSFLTCNLAT-NIKDGSAQRLYGLASV 66 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~---~~~~l~rlLr~L~~~gl~~~~~~~-~~~~g~~~~~y~~t~~ 66 (214)
+.+++|+++++||||++| ||+++|+ +++.|+|+||+|++.|+|++..+. ...+|..++.|++|+.
T Consensus 22 ~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~ 101 (358)
T 1zg3_A 22 VSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPP 101 (358)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHH
T ss_pred HHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHH
Confidence 468999999999999999 8889999 688999999999999999986100 0001101479999999
Q ss_pred ccccCCCCCCCchhhHHhhhhchhhhhhhc-------c-----------cCCcchhhhcchhhHh--hHHhhhhhc----
Q 042599 67 SRYFFPNEDGVSLAPTLLIIQDKVNMDSWA-------C-----------KYTQHSYLCMKDALLE--GFINTLNRY---- 122 (214)
Q Consensus 67 s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~~~~p~~~~--~f~~~m~~~---- 122 (214)
|+.|+++++ .++++++.+..++.++.+|. + +.++|+|+..+|+..+ .|+.+|...
T Consensus 102 s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~ 180 (358)
T 1zg3_A 102 SKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180 (358)
T ss_dssp HHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHH
Confidence 998887766 57777766544433333332 1 3457999999999999 999999651
Q ss_pred -cHHHHH---hcCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeeh
Q 042599 123 -YLKNAL---LEGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKW 189 (214)
Q Consensus 123 -~~~~~~---~~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~ 189 (214)
.+.+.+ ..+...++|||| |..+..+++++|++ +.+++.+.. .++|+++.+|||+++|+.|+|++++
T Consensus 181 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~~~ 259 (358)
T 1zg3_A 181 KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNFVGGDMFKSIPSADAVLLKW 259 (358)
T ss_dssp HHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSEEEEECCTTTCCCCCSEEEEES
T ss_pred HHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCcEEEeCccCCCCCCceEEEEcc
Confidence 122222 124467999998 66777899999964 445544443 3569999999999888889999999
Q ss_pred hccCCChHHHHHHHHHhHHhcCC
Q 042599 190 ILSDWDDEECLKILKNCCVQCNT 212 (214)
Q Consensus 190 ILHdw~d~~~~~IL~~~~~Al~p 212 (214)
|||+|+|++|++||++++++|+|
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p 282 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISH 282 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGG
T ss_pred cccCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.95 E-value=5.8e-28 Score=204.92 Aligned_cols=198 Identities=18% Similarity=0.277 Sum_probs=155.5
Q ss_pred hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
+.+++|+++++||||+.| ||+++|++++.|+|+||+|++.|+|++. + ++.|++|++|+.|.
T Consensus 20 ~~~~~l~~~~~lgi~~~l~~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~-----~----~~~y~~t~~s~~l~- 89 (334)
T 2ip2_A 20 WKSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGD-----T----RDGYANTPTSHLLR- 89 (334)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-----T----TTEEEECHHHHTTS-
T ss_pred HHHHHHHHHHHcCcHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEec-----C----CCeEecCHHHHHHh-
Confidence 468999999999999999 8999999999999999999999999986 2 58999999999888
Q ss_pred CCCCCchhhHHhhhhchhhhhhhc----------------ccCCcchhhhcchhhHhhHHhhhhhcc--HHHHH-h----
Q 042599 73 NEDGVSLAPTLLIIQDKVNMDSWA----------------CKYTQHSYLCMKDALLEGFINTLNRYY--LKNAL-L---- 129 (214)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~~-~---- 129 (214)
+++ .++++++.+..++.+ ..|. .+.++|+|+.++|+..+.|+.+| ... ....+ .
T Consensus 90 ~~~-~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~~ 166 (334)
T 2ip2_A 90 DVE-GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDF 166 (334)
T ss_dssp SST-TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSCC
T ss_pred CCC-ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCCC
Confidence 655 466666654333221 2221 03467999999999999999999 521 11222 1
Q ss_pred cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccC------CCceEEecCCCCcccCc-cceeeeehhccC
Q 042599 130 EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHN------HTVVEHVSGHMFIEVPN-GQALFMKWILSD 193 (214)
Q Consensus 130 ~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~------~~rv~~~~gDff~~~P~-~d~y~l~~ILHd 193 (214)
.+ ..++|+|| |..+..+++++|+. +.+++.+... .++|+++.+|+++++|+ .|+|+++++||+
T Consensus 167 ~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 167 RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGD 245 (334)
T ss_dssp TT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGG
T ss_pred CC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccC
Confidence 23 67899997 66677888888864 2333333221 36899999999998886 599999999999
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
|+|+++.++|++++++|+||
T Consensus 246 ~~~~~~~~~l~~~~~~L~pg 265 (334)
T 2ip2_A 246 LDEAASLRLLGNCREAMAGD 265 (334)
T ss_dssp CCHHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997
No 10
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.95 E-value=7.8e-28 Score=205.90 Aligned_cols=202 Identities=21% Similarity=0.343 Sum_probs=158.9
Q ss_pred hhhHHHHHHHHhCchhHH-----------cCCCCCC---ChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599 2 VLPMTMKTAIQLGVLEIM-----------LPKNNKE---TPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS 67 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L-----------LA~~~~~---~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s 67 (214)
+.+++|+++++||||++| ||+++|+ +++.|+|+||+|++.|+|++.+ + .++.|++|+.|
T Consensus 28 ~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~-----~--~~~~y~~t~~s 100 (352)
T 1fp2_A 28 IDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT-----K--EEESYALTVAS 100 (352)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE-----S--SSEEEEECHHH
T ss_pred HHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec-----C--CCCeEeCCHHH
Confidence 468999999999999999 8889999 5889999999999999999861 0 05899999999
Q ss_pred cccCCCCCCCchhhHHhhhhchhhhhhhc--------c---------cCCcchhhhcchhhHhhHHhhhhhcc--H-H--
Q 042599 68 RYFFPNEDGVSLAPTLLIIQDKVNMDSWA--------C---------KYTQHSYLCMKDALLEGFINTLNRYY--L-K-- 125 (214)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~-~-- 125 (214)
+.|+++++ .++++++.+..++.++.+|. + +.++|+|+.++|+..+.|+.+|.... . .
T Consensus 101 ~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~ 179 (352)
T 1fp2_A 101 ELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLAL 179 (352)
T ss_dssp HTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhHH
Confidence 99987766 56777765543333333331 1 34689999999999999999996521 1 1
Q ss_pred HHH---hcCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeeeehhccC
Q 042599 126 NAL---LEGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFMKWILSD 193 (214)
Q Consensus 126 ~~~---~~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l~~ILHd 193 (214)
+.+ ..+...++|+|| |..+..+++++|+. +.+++.+.. .++|+++.+|+|+++|..|+|+++++||+
T Consensus 180 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~p~~D~v~~~~~lh~ 258 (352)
T 1fp2_A 180 RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SNNLTYVGGDMFTSIPNADAVLLKYILHN 258 (352)
T ss_dssp HTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BTTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred HhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CCCcEEEeccccCCCCCccEEEeehhhcc
Confidence 111 123467999997 66777889999864 455555444 35699999999998888899999999999
Q ss_pred CChHHHHHHHHHhHHhcCC
Q 042599 194 WDDEECLKILKNCCVQCNT 212 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~p 212 (214)
|+|++|+++|++++++|+|
T Consensus 259 ~~d~~~~~~l~~~~~~L~p 277 (352)
T 1fp2_A 259 WTDKDCLRILKKCKEAVTN 277 (352)
T ss_dssp SCHHHHHHHHHHHHHHHSG
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999
No 11
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.95 E-value=3.6e-27 Score=203.21 Aligned_cols=210 Identities=30% Similarity=0.488 Sum_probs=154.7
Q ss_pred hhhHHHHHHHHhCchhHH--------------cCCCCCC------ChhhHHHHHHHHhcCcceeeecccccCCCccccce
Q 042599 2 VLPMTMKTAIQLGVLEIM--------------LPKNNKE------TPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLY 61 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L--------------LA~~~~~------~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y 61 (214)
+.+++|++|++||||++| ||+++|+ +++.|+|+||+|++.|+|++..+++ ++|..++.|
T Consensus 36 ~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~g~~~~~y 114 (372)
T 1fp1_D 36 VYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTI-EDGGAERVY 114 (372)
T ss_dssp HHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEEC-TTSCEEEEE
T ss_pred HHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEeccccc-CCCCcCCeE
Confidence 578999999999999986 5677898 7889999999999999999861000 000003699
Q ss_pred ecchhccccCCCCCCCchhhHHhhhhchhhhhhhc-------c----------cCCcchhhhcchhhHhhHHhhhhhcc-
Q 042599 62 GLASVSRYFFPNEDGVSLAPTLLIIQDKVNMDSWA-------C----------KYTQHSYLCMKDALLEGFINTLNRYY- 123 (214)
Q Consensus 62 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~~~~~~~~~~~p~~~~~f~~~m~~~~- 123 (214)
++|+.|+.|++++++.++++++.+..++.++.+|. + +.++|+|+..+|+..+.|+.+|....
T Consensus 115 ~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~ 194 (372)
T 1fp1_D 115 GLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCA 194 (372)
T ss_dssp EECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhH
Confidence 99999999887765346777766544433333331 1 24678999999999999999996521
Q ss_pred -H-HHHHh-----cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCcccCccceeee
Q 042599 124 -L-KNALL-----EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFIEVPNGQALFM 187 (214)
Q Consensus 124 -~-~~~~~-----~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~~~P~~d~y~l 187 (214)
. ...+. .+...++|+|| |..+..+++++|++ +.+++.+.. .++|+++.+||++++|.+|+|++
T Consensus 195 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~ 273 (372)
T 1fp1_D 195 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-LSGIEHVGGDMFASVPQGDAMIL 273 (372)
T ss_dssp HHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCEEEEEE
T ss_pred HHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-cCCCEEEeCCcccCCCCCCEEEE
Confidence 1 11121 12356899997 66777889999864 445554443 36799999999998888999999
Q ss_pred ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 188 KWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+++||+|+|++|+++|++++++|+||
T Consensus 274 ~~~lh~~~d~~~~~~l~~~~~~L~pg 299 (372)
T 1fp1_D 274 KAVCHNWSDEKCIEFLSNCHKALSPN 299 (372)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ecccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999986
No 12
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.93 E-value=1e-25 Score=193.18 Aligned_cols=200 Identities=14% Similarity=0.143 Sum_probs=154.6
Q ss_pred hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc-cccC
Q 042599 2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS-RYFF 71 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s-~~l~ 71 (214)
+.+++|+++++||||+.| ||+++|++++.|+|+||+|++.|+|+++ ++.|++|+.+ +.|.
T Consensus 43 ~~~~~l~~a~~lgif~~L~~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~----------~~~y~~t~~~~~~l~ 112 (359)
T 1x19_A 43 IEFSCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE----------DGKWSLTEFADYMFS 112 (359)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHSS
T ss_pred HHHHHHHHHHHcCcHHHHcCCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee----------CCeEecCHHHHHHhc
Confidence 468899999999999999 8999999999999999999999999996 5699999974 4566
Q ss_pred CCCCC--CchhhHHhhhhchhhhhhhc-------ccCCcchhhhcchh---hHhhHHhhhhhcc---HHHHH-h----cC
Q 042599 72 PNEDG--VSLAPTLLIIQDKVNMDSWA-------CKYTQHSYLCMKDA---LLEGFINTLNRYY---LKNAL-L----EG 131 (214)
Q Consensus 72 ~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~---~~~~f~~~m~~~~---~~~~~-~----~g 131 (214)
.+++. .++++++.+. ....+..|. ++.+ |+++..+|+ ..+.|+.+|.... ..+.+ . .+
T Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~ 190 (359)
T 1x19_A 113 PTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDG 190 (359)
T ss_dssp SSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCCCTT
T ss_pred CCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcCCCC
Confidence 55441 4677766653 223334442 3444 999999999 9999999986522 11222 1 23
Q ss_pred CCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhccCCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~ILHdw~ 195 (214)
...++|+|| |..+..+++++|+. +.+++.+.. ..+||+++.+|+++ ++|++|+|+++++||+|+
T Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~ 270 (359)
T 1x19_A 191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSAN 270 (359)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSC
T ss_pred CCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCC
Confidence 356899997 66677888888854 444544432 23579999999996 556679999999999999
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
|+++.++|++++++|+||
T Consensus 271 d~~~~~~l~~~~~~L~pg 288 (359)
T 1x19_A 271 EQLSTIMCKKAFDAMRSG 288 (359)
T ss_dssp HHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999999999997
No 13
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.93 E-value=1.2e-25 Score=190.30 Aligned_cols=201 Identities=12% Similarity=0.178 Sum_probs=156.4
Q ss_pred hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc-cccC
Q 042599 2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS-RYFF 71 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s-~~l~ 71 (214)
+.+++|+++++||||+.| ||+++|++++.|+|+||+|++.|+|++. +++|++|++| +.|.
T Consensus 18 ~~~~~l~~~~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~----------~~~y~~t~~~~~~l~ 87 (335)
T 2r3s_A 18 QRSAAIKAAVELNVFTAISQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ----------AEGYRLTSDSAMFLD 87 (335)
T ss_dssp HHHHHHHHHHHTTHHHHHTTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHTC
T ss_pred HHHHHHHHHHHcChHHHHhcCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec----------CCEEecCHHHHHHhc
Confidence 468999999999999999 9999999999999999999999999875 6899999999 6777
Q ss_pred CCCCCCchhhHHhhhhchhhhhhhc-------ccCC-c--chhhhcchhhHhhHHhhhhhcc------HHHHHh---cCC
Q 042599 72 PNEDGVSLAPTLLIIQDKVNMDSWA-------CKYT-Q--HSYLCMKDALLEGFINTLNRYY------LKNALL---EGS 132 (214)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~--~~~~~~~p~~~~~f~~~m~~~~------~~~~~~---~g~ 132 (214)
.+++ .++++++.+..++.....|. ++.+ + |+++.++|+..+.|...|.... +.+.+. .+.
T Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (335)
T 2r3s_A 88 RQSK-FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEP 166 (335)
T ss_dssp TTST-TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CCC
T ss_pred cCCc-HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcccccCCC
Confidence 6665 56777776654434444442 2222 2 7888899999999999886521 112222 233
Q ss_pred CceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCc-ccCc-cceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~ 195 (214)
..++|+|+ |..+..+++++|.. +.+++.+.. ..++|+++.+|+++ ++|+ .|+|+++++||+|+
T Consensus 167 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 246 (335)
T 2r3s_A 167 LKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFD 246 (335)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSC
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCC
Confidence 56899997 66677888888864 334444332 13589999999997 6665 59999999999999
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
++++.++|++++++|+||
T Consensus 247 ~~~~~~~l~~~~~~L~pg 264 (335)
T 2r3s_A 247 VATCEQLLRKIKTALAVE 264 (335)
T ss_dssp HHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999986
No 14
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.93 E-value=1e-25 Score=192.32 Aligned_cols=199 Identities=10% Similarity=0.108 Sum_probs=150.1
Q ss_pred hhhHHHHHHHHhCchhHH--------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc-CC
Q 042599 2 VLPMTMKTAIQLGVLEIM--------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF-FP 72 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L--------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l-~~ 72 (214)
+.+++|+++++||||++| ||+++|++++.|+|+||+|++.|+|+++ +++|++|+.|+.+ .+
T Consensus 36 ~~~~~l~~a~~lgif~~l~~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~----------~~~y~~t~~s~~~l~~ 105 (352)
T 3mcz_A 36 RQSAILHYAVADKLFDLTQTGRTPAEVAASFGMVEGKAAILLHALAALGLLTKE----------GDAFRNTALTERYLTT 105 (352)
T ss_dssp HHHHHHHHHHHTTHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHHST
T ss_pred HHHHHHHHHHHCChHHHhCCCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEec----------CCeeecCHHHHhhccC
Confidence 468899999999999999 9999999999999999999999999996 5789999999864 45
Q ss_pred CCCCCchhhHHhhhhchhhhhhh-------cccCCc-c---hhhhcchhhHhhHHhhhhh--ccHHHHHh----cC-CCc
Q 042599 73 NEDGVSLAPTLLIIQDKVNMDSW-------ACKYTQ-H---SYLCMKDALLEGFINTLNR--YYLKNALL----EG-SVP 134 (214)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~---~~~~~~p~~~~~f~~~m~~--~~~~~~~~----~g-~~~ 134 (214)
+++ .++++++.+. ...+..| .++.+. | .++..+|+..+.|+.+|.. .++.+.+. .+ ...
T Consensus 106 ~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~ 182 (352)
T 3mcz_A 106 TSA-DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELGVFARART 182 (352)
T ss_dssp TCT-TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCE
T ss_pred CCh-hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhhHHHHHHhCCCcCCCCE
Confidence 544 5677665532 1123333 222222 2 2346789999999999965 12212222 12 457
Q ss_pred eEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcc---cCc-cceeeeehhccCCC
Q 042599 135 HTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIE---VPN-GQALFMKWILSDWD 195 (214)
Q Consensus 135 ~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~---~P~-~d~y~l~~ILHdw~ 195 (214)
++|+|| |..+..+++++|+. +.+++.+.. ..+||+++.+|++++ .|+ .|+|+++++||+|+
T Consensus 183 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~ 262 (352)
T 3mcz_A 183 VIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFD 262 (352)
T ss_dssp EEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSC
T ss_pred EEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCC
Confidence 999997 66677889999864 344443322 235899999999976 455 59999999999999
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
|+++.++|++++++|+||
T Consensus 263 ~~~~~~~l~~~~~~L~pg 280 (352)
T 3mcz_A 263 AREAREVIGHAAGLVKPG 280 (352)
T ss_dssp HHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999986
No 15
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.93 E-value=2.1e-25 Score=191.68 Aligned_cols=202 Identities=16% Similarity=0.226 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCcccc--ceecchhcccc
Q 042599 2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQR--LYGLASVSRYF 70 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~--~y~~t~~s~~l 70 (214)
+.+++|++++++|||+.| ||+++|++++.|.|+||+|++.|+|++. + ++ .|++|++|+.|
T Consensus 28 ~~~~~l~~~~~l~i~~~l~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~-----~----~~~~~y~~t~~s~~l 98 (374)
T 1qzz_A 28 VTPMALRVAATLRLVDHLLAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG-----E----KQGRPLRPTRLGMLL 98 (374)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC-----C----C-CCCCEECTTGGGG
T ss_pred HHHHHHHHHHHcChHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEe-----C----CCCeEEEEChHHHhh
Confidence 567999999999999999 8999999999999999999999999985 1 55 99999999999
Q ss_pred CCCCCCCchhhHHhhhhchhhh-hhhcc----------------cCCcchhhhcchhhHhhHHhhhhhcc---HHHHHh-
Q 042599 71 FPNEDGVSLAPTLLIIQDKVNM-DSWAC----------------KYTQHSYLCMKDALLEGFINTLNRYY---LKNALL- 129 (214)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~p~~~~~f~~~m~~~~---~~~~~~- 129 (214)
..+++ .++++++.+..++..+ ..|.. +.++|+++..+|+..+.|+.+|.... ....+.
T Consensus 99 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (374)
T 1qzz_A 99 ADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADA 177 (374)
T ss_dssp STTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHT
T ss_pred cCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHh
Confidence 87765 5676666544332222 23311 35788999999999999999986421 112222
Q ss_pred ---cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehh
Q 042599 130 ---EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWI 190 (214)
Q Consensus 130 ---~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~I 190 (214)
.....++|+|+ |..+..+++++|+. +.+++.+.. ..++|+++.+|+++++|. .|+|+++++
T Consensus 178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v 257 (374)
T 1qzz_A 178 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV 257 (374)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESC
T ss_pred CCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecc
Confidence 12356899997 66677888888854 445554432 124899999999998886 599999999
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
||+|+|+++.++|++++++|+||
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pg 280 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPG 280 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986
No 16
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.93 E-value=3.5e-25 Score=189.60 Aligned_cols=202 Identities=18% Similarity=0.232 Sum_probs=156.6
Q ss_pred hhhHHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 2 VLPMTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 2 ~~~~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
+.+++|++++++|||+.| ||+++|+++..+.|+||+|++.|+|++.+ +++|++|+.|+.|..
T Consensus 31 ~~~~~l~~~~~l~i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~---------~g~y~~t~~s~~l~~ 101 (360)
T 1tw3_A 31 HTPMVVRTAATLRLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA---------PGEFVPTEVGELLAD 101 (360)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---------TTEEEECTTGGGGST
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC---------CCeEEeCHHHHHHhc
Confidence 567999999999999999 89999999999999999999999999862 689999999999987
Q ss_pred CCCCCchhhHHhhhhchh-hhhhhc-------c---------cCCcchhhhcchhhHhhHHhhhhhcc--HHHH-Hh---
Q 042599 73 NEDGVSLAPTLLIIQDKV-NMDSWA-------C---------KYTQHSYLCMKDALLEGFINTLNRYY--LKNA-LL--- 129 (214)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~~~-------~---------~~~~~~~~~~~p~~~~~f~~~m~~~~--~~~~-~~--- 129 (214)
+++ .++++++.+..++. .+..|. + +.++|+++..+|+..+.|..+|.... ..+. +.
T Consensus 102 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~ 180 (360)
T 1tw3_A 102 DHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD 180 (360)
T ss_dssp TST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC
T ss_pred CCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC
Confidence 765 56666655433221 222221 1 35688999999999999999986411 1111 11
Q ss_pred -cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhcc
Q 042599 130 -EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILS 192 (214)
Q Consensus 130 -~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILH 192 (214)
.....++|+|+ |..+..+++++|+. +.+++.+.. ..++|+++.+|+++++|. .|+|+++++||
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~ 260 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL 260 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccccc
Confidence 12356899997 66667888888864 334443332 134899999999998886 59999999999
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
+|+|+++.++|++++++|+||
T Consensus 261 ~~~~~~~~~~l~~~~~~L~pg 281 (360)
T 1tw3_A 261 NWPDHDAVRILTRCAEALEPG 281 (360)
T ss_dssp GSCHHHHHHHHHHHHHTEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999986
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.26 E-value=6.1e-07 Score=76.85 Aligned_cols=180 Identities=7% Similarity=-0.058 Sum_probs=97.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCCCCCCchhhHHhh--hhchhhhhhhcc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNEDGVSLAPTLLI--IQDKVNMDSWAC 97 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 97 (214)
||.++|.+++.++++|+.|++.|+++.. ++ |++|+.+..++.........+.... ......+..|..
T Consensus 61 La~~~g~~~~~v~~~L~~l~~~gll~~~----------~~-~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~g~~~~~~~~ 129 (373)
T 2qm3_A 61 IVDLSEEPLPLVVAILESLNELGYVTFE----------DG-VKLTEKGEELVAEYGIGKRYDFTCPHCQGKTVDLQAFAD 129 (373)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEECS----------SS-SEECHHHHHHHHHHTCCCCCC------------CGGGHH
T ss_pred HHHHhCCChHHHHHHHHHHhhCCcEEEC----------CC-EEECHHHHHHHHhcCccccccccchhhcCCCcchhhhHH
Confidence 7888999999999999999999999864 44 9999987654332110111111000 000000000000
Q ss_pred -cCCcchhhhcchhhHhhHHh-hhhhccH-HHH---Hhc---CCCceEEccC-CccHHHHHHhCCC-------c-hHHHH
Q 042599 98 -KYTQHSYLCMKDALLEGFIN-TLNRYYL-KNA---LLE---GSVPHTKAQS-GMDAFAAAAKDAR-------M-NNLFN 159 (214)
Q Consensus 98 -~~~~~~~~~~~p~~~~~f~~-~m~~~~~-~~~---~~~---g~~~~~dvgG-G~~~~~~~~~~P~-------l-~~v~~ 159 (214)
...+.+.+...|.....|.. ++..... ... ... ....++|+|| |..+..++...|. + +..++
T Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlGG~G~~~~~la~~~~~~~v~~vDi~~~~l~ 209 (373)
T 2qm3_A 130 LLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSGLPKRIAVLDIDERLTK 209 (373)
T ss_dssp HHHHHHHHHTTCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEESCTTCHHHHHHHHTCCSEEEEECSCHHHHH
T ss_pred HHHHHHHHHhcCCccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 00000111111111111111 0000000 000 111 2356899997 6667777777772 2 34444
Q ss_pred hhcc-----CCCceEEecCCCCcccCc-----cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 160 QSMH-----NHTVVEHVSGHMFIEVPN-----GQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 160 ~~~~-----~~~rv~~~~gDff~~~P~-----~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.+.. ..++|+++.+|+++++|. -|++++...+|.+. ...+|+++.++|+||
T Consensus 210 ~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~Lkpg 270 (373)
T 2qm3_A 210 FIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKGP 270 (373)
T ss_dssp HHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCST
T ss_pred HHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHcccC
Confidence 4332 123899999999986662 39999987776552 589999999999995
No 18
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.00 E-value=9.3e-06 Score=66.60 Aligned_cols=83 Identities=8% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCceEEccCCc---cHH--HHHHhCCCc--------hHHHHhhcc---CCCceEEecCCCCcc------------cC--
Q 042599 131 GSVPHTKAQSGM---DAF--AAAAKDARM--------NNLFNQSMH---NHTVVEHVSGHMFIE------------VP-- 180 (214)
Q Consensus 131 g~~~~~dvgGG~---~~~--~~~~~~P~l--------~~v~~~~~~---~~~rv~~~~gDff~~------------~P-- 180 (214)
+...++|+|+|. ..+ .+.+.+|+. +.+++.+.. ..++++++.+|++++ +|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 446799999876 433 344556753 345554432 246899999999863 33
Q ss_pred ccceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 181 NGQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 181 ~~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+.|++++..+||.++|++...+|++++++|+||
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG 189 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG 189 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence 249999999999999999999999999999997
No 19
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=97.79 E-value=6.4e-05 Score=61.16 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=63.6
Q ss_pred CCCceEEccC--CccHHHHHHhC--CCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCccceeeeehhc
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKD--ARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNGQALFMKWIL 191 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~--P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~d~y~l~~IL 191 (214)
....++|+|. |..+..++++. |.. +..++.+.. ...+|+++.+|+.+ +.++.|++++..+|
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l 149 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 149 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeee
Confidence 4467999996 55566777764 332 344554432 24589999999986 45567999999999
Q ss_pred cCCChHHHHHHHHHhHHhcCCC
Q 042599 192 SDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 192 Hdw~d~~~~~IL~~~~~Al~pg 213 (214)
|..++++-..+|+++++.|+||
T Consensus 150 ~~~~~~~~~~~l~~i~~~LkpG 171 (261)
T 4gek_A 150 QFLEPSERQALLDKIYQGLNPG 171 (261)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEE
T ss_pred eecCchhHhHHHHHHHHHcCCC
Confidence 9999999999999999999997
No 20
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=97.79 E-value=4.1e-05 Score=60.43 Aligned_cols=81 Identities=7% Similarity=0.053 Sum_probs=63.1
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---CCCceEEecCCCCc-ccCc-cceeeeehhccCCChH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDE 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~ 197 (214)
..++|+|+ |..+..+++..|.. +..++.+.. ...+++++.+|+.+ +.+. -|++++..+||.+++.
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 125 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDE 125 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGSCHH
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccCCHH
Confidence 56899997 66667788887743 334444332 23489999999987 3443 4999999999999999
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
+...+|+++++.|+||
T Consensus 126 ~~~~~l~~~~~~Lkpg 141 (234)
T 3dtn_A 126 DKKELYKRSYSILKES 141 (234)
T ss_dssp HHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999986
No 21
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.75 E-value=4.7e-05 Score=58.71 Aligned_cols=82 Identities=15% Similarity=0.042 Sum_probs=63.8
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECL 200 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~ 200 (214)
...++|+|. |..+..+++...++ +..++.+....++++++.+|+.+ +.|. -|++++..+||.+++++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 121 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP 121 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence 567999997 55555666664433 34555555546789999999986 4553 3999999999999999999
Q ss_pred HHHHHhHHhcCCC
Q 042599 201 KILKNCCVQCNTG 213 (214)
Q Consensus 201 ~IL~~~~~Al~pg 213 (214)
++|+++++.|+||
T Consensus 122 ~~l~~~~~~L~pg 134 (203)
T 3h2b_A 122 DALVALRMAVEDG 134 (203)
T ss_dssp HHHHHHHHTEEEE
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999986
No 22
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.68 E-value=5e-05 Score=59.43 Aligned_cols=82 Identities=9% Similarity=0.050 Sum_probs=62.3
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc--cceeeeehhccCCCh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDD 196 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d 196 (214)
...++|+|+ |..+..+.+..|++ +..++.+.. ...+++++.+|+.+ ++|. -|+++...++|.+..
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~ 118 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 118 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCH
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCH
Confidence 356899997 55566677777743 334443332 23689999999986 5553 499999999999999
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++..++|+++++.|+||
T Consensus 119 ~~~~~~l~~~~~~L~~g 135 (227)
T 1ve3_A 119 LELNQVFKEVRRVLKPS 135 (227)
T ss_dssp HHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999999986
No 23
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=97.67 E-value=9e-05 Score=57.49 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=62.2
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhccC-CCceEEecCCCCcccCc--cceeeeehhccCCChHHHHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHN-HTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECLK 201 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~-~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~~ 201 (214)
..++|+|+ |..+..+++...++ +..++.+... .++++++.+|+.+..|. -|++++..+||.+++++...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~ 127 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEA 127 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCHHHHHH
Confidence 46999997 55555666654332 3344444433 36899999999977564 39999999999999999999
Q ss_pred HHHHhHHhcCCC
Q 042599 202 ILKNCCVQCNTG 213 (214)
Q Consensus 202 IL~~~~~Al~pg 213 (214)
+|+++++.|+||
T Consensus 128 ~l~~~~~~L~pg 139 (218)
T 3ou2_A 128 FWESVRSAVAPG 139 (218)
T ss_dssp HHHHHHHHEEEE
T ss_pred HHHHHHHHcCCC
Confidence 999999999986
No 24
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=97.66 E-value=0.00015 Score=56.42 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=62.3
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCC-CceEEecCCCCc-ccCc-cceeeeehhccCCChHHH
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNH-TVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDEEC 199 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~-~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~~~ 199 (214)
....++|+|+ |..+..+++...++ +..++.+.... .+++++.+|+.+ +.+. -|+++...+||.+++.+.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~ 124 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEK 124 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSCHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCChHHH
Confidence 3457999997 55556666654432 23444443322 489999999996 4443 499999999999999999
Q ss_pred HHHHHHhHHhcCCC
Q 042599 200 LKILKNCCVQCNTG 213 (214)
Q Consensus 200 ~~IL~~~~~Al~pg 213 (214)
..+|+++++.|+||
T Consensus 125 ~~~l~~~~~~Lkpg 138 (220)
T 3hnr_A 125 NVAIAKYSQLLNKG 138 (220)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999997
No 25
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=97.40 E-value=0.00029 Score=54.89 Aligned_cols=83 Identities=5% Similarity=-0.070 Sum_probs=61.6
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccC------C----CceEEecCCCCc-ccCc--cceeee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHN------H----TVVEHVSGHMFI-EVPN--GQALFM 187 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~------~----~rv~~~~gDff~-~~P~--~d~y~l 187 (214)
....++|+|. |..+..+++..|.. +..++.+... . .+++++.+|+.. +.+. -|++++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 3457999996 66666677767632 3344443321 1 289999999964 3332 399999
Q ss_pred ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 188 KWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
..+||.+++++..++|+++++.|+||
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (219)
T 3jwg_A 109 IEVIEHLDENRLQAFEKVLFEFTRPQ 134 (219)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999997
No 26
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=97.38 E-value=0.00035 Score=54.43 Aligned_cols=83 Identities=5% Similarity=-0.132 Sum_probs=61.6
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccC-----C-----CceEEecCCCCc-ccCc--cceeee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHN-----H-----TVVEHVSGHMFI-EVPN--GQALFM 187 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~-----~-----~rv~~~~gDff~-~~P~--~d~y~l 187 (214)
....++|+|. |..+..+++..|.. +..++.+... . .+++++.+|+.. +.+. -|++++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 3457999996 66666777766632 3344433321 1 279999999864 3332 399999
Q ss_pred ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 188 KWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
..+||.+++++..++|+++++.|+||
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (217)
T 3jwh_A 109 IEVIEHLDLSRLGAFERVLFEFAQPK 134 (217)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999997
No 27
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=97.34 E-value=0.00043 Score=54.85 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=60.3
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc---ccCcc--ceeeeehhccCCChHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI---EVPNG--QALFMKWILSDWDDEE 198 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~---~~P~~--d~y~l~~ILHdw~d~~ 198 (214)
...++|+|+ |..+..+.+...++ +..++.+.. +++++.+|..+ ++|.+ |+++...+||.+++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~---~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~ 118 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG---KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPER 118 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHT---TSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGG
T ss_pred CCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHh---hcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHH
Confidence 357999997 55555666655443 233444433 28999999876 56643 9999999999999999
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
...+|+++++.|+||
T Consensus 119 ~~~~l~~~~~~Lkpg 133 (240)
T 3dli_A 119 LFELLSLCYSKMKYS 133 (240)
T ss_dssp HHHHHHHHHHHBCTT
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999997
No 28
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=97.31 E-value=0.00026 Score=55.75 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=60.0
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCC-ceEEecCCCCcccCc--cceeeeehhccCCChHHHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHT-VVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECL 200 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~-rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~ 200 (214)
...++|+|. |..+..+++..+++ +..++.+..... +++++.+|+.+..|. -|++++.++||.++|. .
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~--~ 120 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP--V 120 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH--H
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH--H
Confidence 356999996 55666677777764 334444443222 899999999876554 3999999999999876 5
Q ss_pred HHHHHhH-HhcCCC
Q 042599 201 KILKNCC-VQCNTG 213 (214)
Q Consensus 201 ~IL~~~~-~Al~pg 213 (214)
++|++++ +.|+||
T Consensus 121 ~~l~~~~~~~Lkpg 134 (250)
T 2p7i_A 121 ALLKRINDDWLAEG 134 (250)
T ss_dssp HHHHHHHHTTEEEE
T ss_pred HHHHHHHHHhcCCC
Confidence 8999999 999986
No 29
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=97.30 E-value=0.00029 Score=56.01 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=60.0
Q ss_pred CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc---CCCceEEecCCCCc-ccCc--cceeeeehhccCCCh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDD 196 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d 196 (214)
...++|+|+ |..+..+++.... + +..++.+.. ...+++++.+|+.+ ++|. -|+++...+||.+++
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 173 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTD 173 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCH
T ss_pred CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCH
Confidence 356899996 5555555555322 2 233443332 12689999999985 4553 399999999999999
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++..++|+++++.|+||
T Consensus 174 ~~~~~~l~~~~~~Lkpg 190 (254)
T 1xtp_A 174 ADFVKFFKHCQQALTPN 190 (254)
T ss_dssp HHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999986
No 30
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=97.29 E-value=0.00051 Score=54.82 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=61.2
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC---CCceEEecCCCCc-ccCc--cceeeeehhccCCChH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN---HTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDE 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~---~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~ 197 (214)
..++|+|. |..+..++++.. ++ +..++.+... .++|+++.+|+.+ ++|. -|+++...+||.++++
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 136 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLE 136 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHH
T ss_pred CEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhcChH
Confidence 46899996 656666666532 21 2344443332 2789999999986 5654 3999999999999999
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
+...+|+++++.|+||
T Consensus 137 ~~~~~l~~~~~~L~pg 152 (266)
T 3ujc_A 137 NKNKLFQKCYKWLKPT 152 (266)
T ss_dssp HHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999986
No 31
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00038 Score=54.92 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=58.3
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccCCCh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDD 196 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d 196 (214)
..++|+|. |..+..+++....+ +..++.+.. ...+|+++.+|+.+..|. -|+++...+||.+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 147 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEP 147 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCG
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCH
Confidence 46899997 44444444322211 233333322 135799999999985554 399999999999999
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++..++|+++++.|+||
T Consensus 148 ~~~~~~l~~~~~~Lkpg 164 (235)
T 3lcc_A 148 EMRPAWAKSMYELLKPD 164 (235)
T ss_dssp GGHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 99999999999999986
No 32
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=97.23 E-value=0.00028 Score=58.04 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=40.6
Q ss_pred CceEEecCCCCccc------Cc--cceeeeehhc---c-CCChHHHHHHHHHhHHhcCCC
Q 042599 166 TVVEHVSGHMFIEV------PN--GQALFMKWIL---S-DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 166 ~rv~~~~gDff~~~------P~--~d~y~l~~IL---H-dw~d~~~~~IL~~~~~Al~pg 213 (214)
.+|+|+.+|+.+.. +. -|+++...++ | +|+++...++|+++++.|+||
T Consensus 154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpG 213 (292)
T 3g07_A 154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPG 213 (292)
T ss_dssp TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred ccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCC
Confidence 47999999998532 32 3999999998 5 679999999999999999986
No 33
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=97.23 E-value=0.00048 Score=54.58 Aligned_cols=82 Identities=6% Similarity=-0.012 Sum_probs=63.2
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc--CCCceEEecCCCCcc-cCc-------cceeeeehhccC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH--NHTVVEHVSGHMFIE-VPN-------GQALFMKWILSD 193 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~--~~~rv~~~~gDff~~-~P~-------~d~y~l~~ILHd 193 (214)
...++|+|. |..+..+++..+++ +..++.+.. ...+++++.+|+.+. .+. -|+++...++|.
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~ 136 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHH 136 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTT
T ss_pred CCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhc
Confidence 356999996 66677778877754 334444432 235899999999972 221 389999999999
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
.++++..++|+++++.|+||
T Consensus 137 ~~~~~~~~~l~~~~~~Lkpg 156 (245)
T 3ggd_A 137 IPVEKRELLGQSLRILLGKQ 156 (245)
T ss_dssp SCGGGHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999997
No 34
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=97.19 E-value=0.0003 Score=56.40 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=58.0
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhccCCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~ 195 (214)
...++|+|+ |..+..+++..+++ +..++.+.. ..++++++.+|+.+ ++|. -|+++...+||.|+
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~ 117 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFP 117 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGCS
T ss_pred CCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhcC
Confidence 356899996 55566677766643 233333322 23579999999986 5664 39999999999998
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
|.. .+|+++++.|+||
T Consensus 118 d~~--~~l~~~~r~Lkpg 133 (260)
T 1vl5_A 118 NPA--SFVSEAYRVLKKG 133 (260)
T ss_dssp CHH--HHHHHHHHHEEEE
T ss_pred CHH--HHHHHHHHHcCCC
Confidence 764 8999999999986
No 35
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.17 E-value=0.00091 Score=50.49 Aligned_cols=83 Identities=8% Similarity=0.034 Sum_probs=61.8
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeee-hhccCCChHH
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMK-WILSDWDDEE 198 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~-~ILHdw~d~~ 198 (214)
....++|+|. |.....+++...++ +..++.+....++++++.+|+.+ +.|. -|++++. .++|..++++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~ 125 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDG 125 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChHH
Confidence 3457899996 55555666653322 34455555445679999999986 5553 3999998 8999999999
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
...+|+++.+.|+||
T Consensus 126 ~~~~l~~~~~~l~~~ 140 (195)
T 3cgg_A 126 REPALANIHRALGAD 140 (195)
T ss_dssp HHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999886
No 36
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=97.15 E-value=0.00033 Score=55.81 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=58.8
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc--CCCceEEecCCCCc-ccCc--cceeeeehhccCCChH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH--NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~--~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~ 197 (214)
...++|+|+ |..+..+++..+ .+ +..++.+.. ...+++++.+|+.+ ++|. -|+++...+||.++|
T Consensus 45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~- 123 (253)
T 3g5l_A 45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS- 123 (253)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC-
T ss_pred CCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh-
Confidence 356899997 555666777766 22 334444332 24689999999985 5553 399999999999955
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
..++|+++++.|+||
T Consensus 124 -~~~~l~~~~~~Lkpg 138 (253)
T 3g5l_A 124 -FDDICKKVYINLKSS 138 (253)
T ss_dssp -HHHHHHHHHHHEEEE
T ss_pred -HHHHHHHHHHHcCCC
Confidence 578999999999986
No 37
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=97.09 E-value=0.00063 Score=54.54 Aligned_cols=82 Identities=10% Similarity=0.025 Sum_probs=61.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc-cceeeeeh-hccCCCh-HHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN-GQALFMKW-ILSDWDD-EEC 199 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~-~d~y~l~~-ILHdw~d-~~~ 199 (214)
...++|+|+ |..+..+++..+++ +..++.+.....+++++.+|+.+ +.+. -|+++... +||.+++ ++.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~ 130 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAEL 130 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHH
T ss_pred CCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHH
Confidence 357999997 55666677666643 34555555545689999999986 3343 49999997 9998865 788
Q ss_pred HHHHHHhHHhcCCC
Q 042599 200 LKILKNCCVQCNTG 213 (214)
Q Consensus 200 ~~IL~~~~~Al~pg 213 (214)
.++|+++++.|+||
T Consensus 131 ~~~l~~~~~~L~pg 144 (263)
T 3pfg_A 131 DAALERFAAHVLPD 144 (263)
T ss_dssp HHHHHHHHHTEEEE
T ss_pred HHHHHHHHHhcCCC
Confidence 89999999999986
No 38
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=96.98 E-value=0.001 Score=53.60 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=59.7
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw 194 (214)
..++|+|. |..+..+++..|.. +..++.+.. ..++++++.+|+.+ +.|. -|+++...+||.+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 118 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL 118 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGGC
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhhc
Confidence 56899996 66666778887753 233433322 23579999999996 4553 3999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+|.. .+|+++++.|+||
T Consensus 119 ~~~~--~~l~~~~~~L~pg 135 (276)
T 3mgg_A 119 QSPE--EALKSLKKVLKPG 135 (276)
T ss_dssp SCHH--HHHHHHHHHEEEE
T ss_pred CCHH--HHHHHHHHHcCCC
Confidence 9876 8999999999986
No 39
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=96.94 E-value=0.0019 Score=52.92 Aligned_cols=82 Identities=11% Similarity=0.100 Sum_probs=59.2
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CC----CceEEecCCCCc-ccCc-cceeee-ehhcc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NH----TVVEHVSGHMFI-EVPN-GQALFM-KWILS 192 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~----~rv~~~~gDff~-~~P~-~d~y~l-~~ILH 192 (214)
...++|+|+ |..+..+++...++ +..++.+.. .. .+|+++.+|+.+ +.+. -|++++ ..++|
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 162 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSIN 162 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHHT
T ss_pred CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcccc
Confidence 347999996 66677777664433 233433322 11 679999999997 3443 397775 58888
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
.+++++..++|+++++.|+||
T Consensus 163 ~~~~~~~~~~l~~~~~~L~pg 183 (299)
T 3g2m_A 163 ELDEADRRGLYASVREHLEPG 183 (299)
T ss_dssp TSCHHHHHHHHHHHHHHEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCC
Confidence 888899999999999999986
No 40
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=96.92 E-value=0.00079 Score=50.16 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=57.7
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccCc--cceeeeehhccCCChHHHHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECLK 201 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~~ 201 (214)
...++|+|+ |..+..+++...++ +..++.+....++++++.+| .++|. -|++++..++|.+++. ..
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~l~~~~~~--~~ 93 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANSFHDMDDK--QH 93 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESCSTTCSCH--HH
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccchhcccCH--HH
Confidence 356899996 66666776665422 33444444436789999999 55664 4999999999999754 58
Q ss_pred HHHHhHHhcCCC
Q 042599 202 ILKNCCVQCNTG 213 (214)
Q Consensus 202 IL~~~~~Al~pg 213 (214)
+|+++++.|+||
T Consensus 94 ~l~~~~~~L~pg 105 (170)
T 3i9f_A 94 VISEVKRILKDD 105 (170)
T ss_dssp HHHHHHHHEEEE
T ss_pred HHHHHHHhcCCC
Confidence 999999999886
No 41
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=96.89 E-value=0.0013 Score=52.08 Aligned_cols=82 Identities=9% Similarity=0.114 Sum_probs=58.6
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC-----CCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN-----HTVVEHVSGHMFI-EVPN--GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~-----~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw 194 (214)
...++|+|+ |..+..+++... ++ +..++.+... ..+++++.+|+.+ +.+. -|++++..+||.+
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 159 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 159 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhC
Confidence 356899997 444555555543 21 2334333221 3468999999875 3443 3999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
++++..++|+++++.|+||
T Consensus 160 ~~~~~~~~l~~~~~~Lkpg 178 (241)
T 2ex4_A 160 TDQHLAEFLRRCKGSLRPN 178 (241)
T ss_dssp CHHHHHHHHHHHHHHEEEE
T ss_pred CHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986
No 42
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=96.85 E-value=0.00092 Score=51.52 Aligned_cols=77 Identities=12% Similarity=0.210 Sum_probs=56.2
Q ss_pred ceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599 134 PHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW 194 (214)
Q Consensus 134 ~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw 194 (214)
.++|+|+ |..+..++++ |.. +..++.+.. ..++++++.+|+.+ ++|. -|++++..+||.+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 124 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW 124 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence 7999997 5555666665 432 233333322 13589999999986 6664 3999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
++ ...+|+++++.|+||
T Consensus 125 ~~--~~~~l~~~~~~L~pg 141 (219)
T 3dlc_A 125 ED--VATAFREIYRILKSG 141 (219)
T ss_dssp SC--HHHHHHHHHHHEEEE
T ss_pred cC--HHHHHHHHHHhCCCC
Confidence 55 457999999999986
No 43
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=96.85 E-value=0.0016 Score=50.47 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=58.9
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhc---cCCCceEEecCCCCcccCc--cceeeeehhccCCCh-HH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM---HNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDD-EE 198 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~---~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d-~~ 198 (214)
..++|+|. |..+..+++...++ +..++.+. ...++++++.+|+.+..|. -|+++...+||.+++ ++
T Consensus 53 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~ 132 (216)
T 3ofk_A 53 SNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQ 132 (216)
T ss_dssp EEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSSSHHH
T ss_pred CcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCCCHHH
Confidence 46899996 55555666554332 23333332 2235899999999975453 399999999999997 66
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
..++|+++++.|+||
T Consensus 133 ~~~~l~~~~~~L~pg 147 (216)
T 3ofk_A 133 MRTAIDNMVKMLAPG 147 (216)
T ss_dssp HHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHcCCC
Confidence 779999999999986
No 44
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=96.85 E-value=0.001 Score=54.34 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=57.8
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDW 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw 194 (214)
..++|+|+ |..+..+++..+ ++ +..++.+.. ..++|+++.+|+.+ ++|.+ |+++...+||.+
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 163 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHS 163 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhc
Confidence 56899996 555666666543 21 233333221 23689999999986 56643 999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+| ..++|+++++.|+||
T Consensus 164 ~~--~~~~l~~~~~~Lkpg 180 (297)
T 2o57_A 164 PD--KLKVFQECARVLKPR 180 (297)
T ss_dssp SC--HHHHHHHHHHHEEEE
T ss_pred CC--HHHHHHHHHHHcCCC
Confidence 98 689999999999986
No 45
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=96.84 E-value=0.00077 Score=52.15 Aligned_cols=80 Identities=14% Similarity=-0.024 Sum_probs=57.7
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccCc--cceeeeehhccCCChHHHHHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECLKI 202 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~~I 202 (214)
..++|+|. |..+..+++...++ +..++.+.... +++++.+|+.+.-+. -|+++...+||.+++++...+
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~ 123 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADV 123 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCCCCCcEEEEEecCchhhcCHHHHHHH
Confidence 56899997 55555666653322 23333333221 678888998753243 399999999999999999999
Q ss_pred HHHhHHhcCCC
Q 042599 203 LKNCCVQCNTG 213 (214)
Q Consensus 203 L~~~~~Al~pg 213 (214)
|+++++.|+||
T Consensus 124 l~~~~~~Lkpg 134 (211)
T 3e23_A 124 LKLIWRALKPG 134 (211)
T ss_dssp HHHHHHHEEEE
T ss_pred HHHHHHhcCCC
Confidence 99999999986
No 46
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=96.82 E-value=0.0021 Score=50.51 Aligned_cols=80 Identities=9% Similarity=0.094 Sum_probs=58.0
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc--CCCceEEecCCCCc-ccCc--cceeeeehhccCCChHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH--NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEE 198 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~--~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~ 198 (214)
...++|+|+ |..+..+++...++ +..++.+.. ...+++++.+|+.+ +.|. -|+++..++||.++|.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 132 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEP- 132 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCH-
T ss_pred CCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCH-
Confidence 357999997 55555666654432 234444433 24689999999996 5553 3999999999999765
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
..+|+++++.|+||
T Consensus 133 -~~~l~~~~~~L~pg 146 (242)
T 3l8d_A 133 -LRALNEIKRVLKSD 146 (242)
T ss_dssp -HHHHHHHHHHEEEE
T ss_pred -HHHHHHHHHHhCCC
Confidence 47899999999986
No 47
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=96.75 E-value=0.0016 Score=50.99 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=59.8
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc-cceee-eehhccCC-ChHHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN-GQALF-MKWILSDW-DDEEC 199 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~-~d~y~-l~~ILHdw-~d~~~ 199 (214)
...++|+|+ |..+..+++..+++ +..++.+....++++++.+|+.+ +.+. -|+++ ...++|.. +.++.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~ 120 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEEL 120 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHHHH
T ss_pred CCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHHHH
Confidence 356899996 66666777776643 34555555445679999999986 3333 39999 55577776 45889
Q ss_pred HHHHHHhHHhcCCC
Q 042599 200 LKILKNCCVQCNTG 213 (214)
Q Consensus 200 ~~IL~~~~~Al~pg 213 (214)
.++|+++++.|+||
T Consensus 121 ~~~l~~~~~~L~pg 134 (239)
T 3bxo_A 121 GAAVASFAEHLEPG 134 (239)
T ss_dssp HHHHHHHHHTEEEE
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999986
No 48
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=96.72 E-value=0.0014 Score=51.84 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=57.5
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhccCCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~ 195 (214)
...++|+|+ |..+..+++..+++ +..++.+.. ..++++++.+|+.+ ++|. -|+++...++|.|+
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 101 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFS 101 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGCS
T ss_pred CCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhhcc
Confidence 356899996 56566677666643 233333221 23579999999875 4453 39999999999998
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
|. ..+|+++++.|+||
T Consensus 102 ~~--~~~l~~~~~~Lkpg 117 (239)
T 1xxl_A 102 DV--RKAVREVARVLKQD 117 (239)
T ss_dssp CH--HHHHHHHHHHEEEE
T ss_pred CH--HHHHHHHHHHcCCC
Confidence 74 58899999999986
No 49
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=96.71 E-value=0.0028 Score=51.40 Aligned_cols=80 Identities=9% Similarity=-0.013 Sum_probs=58.9
Q ss_pred CceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhccCCCh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDD 196 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d 196 (214)
..++|+|. |..+..++++.+. + +..++.+.. ..++++++.+|+. .+|. -|+++...+||.+++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD~v~~~~~l~~~~~ 144 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVDRIVSIGAFEHFGH 144 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCSEEEEESCGGGTCT
T ss_pred CEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCeeEEEEeCchhhcCh
Confidence 46899996 5555666655442 1 233333221 1358999999995 4564 499999999999999
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++...+|+++++.|+||
T Consensus 145 ~~~~~~l~~~~~~Lkpg 161 (287)
T 1kpg_A 145 ERYDAFFSLAHRLLPAD 161 (287)
T ss_dssp TTHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 89999999999999997
No 50
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=96.70 E-value=0.0021 Score=49.79 Aligned_cols=82 Identities=7% Similarity=0.043 Sum_probs=59.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----------------CCCceEEecCCCCcc-cCc-c--
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----------------NHTVVEHVSGHMFIE-VPN-G-- 182 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----------------~~~rv~~~~gDff~~-~P~-~-- 182 (214)
...++|+|. |..+..++++.-++ +..++.+.. ...+|+++.+|+++. .+. +
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~f 102 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHC 102 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSE
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCE
Confidence 356899995 66666666653322 233443322 135899999999973 332 3
Q ss_pred ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 183 QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
|+++.+.+||..++++-.+.|+++++.|+||
T Consensus 103 D~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg 133 (203)
T 1pjz_A 103 AAFYDRAAMIALPADMRERYVQHLEALMPQA 133 (203)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred EEEEECcchhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999988889999999999997
No 51
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=96.63 E-value=0.0032 Score=49.00 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=58.1
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---C-------CCceEEecCCCCc-ccCc--cceeeeehh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---N-------HTVVEHVSGHMFI-EVPN--GQALFMKWI 190 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~-------~~rv~~~~gDff~-~~P~--~d~y~l~~I 190 (214)
...++|+|+ |..+..+++....+ +..++.+.. . ..+++++.+|+.+ ++|. -|++++..+
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 110 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAF 110 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcch
Confidence 357999997 55556666653322 233333322 1 2368999999985 5553 399999999
Q ss_pred ccCCCh-HHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDD-EECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d-~~~~~IL~~~~~Al~pg 213 (214)
||.++| ++..++|+++++.|+||
T Consensus 111 l~~~~~~~~~~~~l~~~~~~L~pg 134 (235)
T 3sm3_A 111 LTSVPDPKERSRIIKEVFRVLKPG 134 (235)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCC
Confidence 999976 55779999999999986
No 52
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=96.59 E-value=0.0016 Score=53.64 Aligned_cols=82 Identities=6% Similarity=0.005 Sum_probs=57.5
Q ss_pred CCceEEccCCc--cHHHHH-HhCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc-cceeeeehhcc
Q 042599 132 SVPHTKAQSGM--DAFAAA-AKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN-GQALFMKWILS 192 (214)
Q Consensus 132 ~~~~~dvgGG~--~~~~~~-~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~-~d~y~l~~ILH 192 (214)
...++|+|+|. .+..++ ...|.. +..++.+.. ...+|+++.+|+.+ +.|. -|+++...++|
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 198 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNI 198 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSSGG
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECChhh
Confidence 45699999744 444443 456653 333433322 13469999999996 3443 39999999999
Q ss_pred CCC-hHHHHHHHHHhHHhcCCC
Q 042599 193 DWD-DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~-d~~~~~IL~~~~~Al~pg 213 (214)
.++ ++.+..+|+++++.|+||
T Consensus 199 ~~~~~~~~~~~l~~~~~~Lkpg 220 (305)
T 3ocj_A 199 YEPDDARVTELYRRFWQALKPG 220 (305)
T ss_dssp GCCCHHHHHHHHHHHHHHEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCC
Confidence 995 555668999999999986
No 53
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=96.59 E-value=0.0028 Score=49.08 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=58.6
Q ss_pred CCceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-----CCCceEEecCCCCc-ccCc--cceeeeehhcc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN--GQALFMKWILS 192 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILH 192 (214)
...++|+|. |..+..+++.. |.. +..++.+.. ..++++++.+|+.+ ++|. -|++++..++|
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 117 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH 117 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGG
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhh
Confidence 356899996 77777777765 542 233333322 23579999999986 4554 39999999999
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
.++|. ..+|+++++.|+||
T Consensus 118 ~~~~~--~~~l~~~~~~Lkpg 136 (219)
T 3dh0_A 118 ELSEP--LKFLEELKRVAKPF 136 (219)
T ss_dssp GCSSH--HHHHHHHHHHEEEE
T ss_pred hcCCH--HHHHHHHHHHhCCC
Confidence 99764 68999999999886
No 54
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=96.56 E-value=0.0019 Score=50.65 Aligned_cols=81 Identities=6% Similarity=-0.066 Sum_probs=58.7
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc-cceeeeeh-hccCCC-h
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN-GQALFMKW-ILSDWD-D 196 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~-~d~y~l~~-ILHdw~-d 196 (214)
..++|+|+ |..+..+++...++ +..++.+.. ...+++++.+|+.+ +.|. -|++++.. +||.++ +
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~ 118 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDS 118 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSH
T ss_pred CeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccccCCH
Confidence 56899996 66677777665432 233333322 12279999999986 4443 39999998 999984 5
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++..++|+++++.|+||
T Consensus 119 ~~~~~~l~~~~~~L~pg 135 (246)
T 1y8c_A 119 DDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp HHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88999999999999986
No 55
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=96.46 E-value=0.0035 Score=49.73 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=58.6
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCcccCc--cceeeeehhccCCChHHHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWDDEECL 200 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~d~~~~ 200 (214)
..++|+|. |..+..+++..|.. +..++.+....++++++.+|+.+..|. -|+++...++|..+| -.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~--~~ 112 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAVFQWVPD--HL 112 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEESCGGGSTT--HH
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEeCchhhCCC--HH
Confidence 56899996 66666777776642 334444444356899999999863253 399999999999975 45
Q ss_pred HHHHHhHHhcCCC
Q 042599 201 KILKNCCVQCNTG 213 (214)
Q Consensus 201 ~IL~~~~~Al~pg 213 (214)
.+|+++++.|+||
T Consensus 113 ~~l~~~~~~L~pg 125 (259)
T 2p35_A 113 AVLSQLMDQLESG 125 (259)
T ss_dssp HHHHHHGGGEEEE
T ss_pred HHHHHHHHhcCCC
Confidence 7899999999986
No 56
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=96.45 E-value=0.0088 Score=47.86 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=53.6
Q ss_pred CCceEEccCCc--cHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHH
Q 042599 132 SVPHTKAQSGM--DAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECL 200 (214)
Q Consensus 132 ~~~~~dvgGG~--~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~ 200 (214)
...++|+|.|. .+..+++...++ +..++.+... .+++++.+|+.+ +.|. -|+++...++|.++| ..
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~ 111 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH-PQVEWFTGYAENLALPDKSVDGVISILAIHHFSH--LE 111 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCC-TTEEEECCCTTSCCSCTTCBSEEEEESCGGGCSS--HH
T ss_pred CCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-cCCEEEECchhhCCCCCCCEeEEEEcchHhhccC--HH
Confidence 35689999744 444555422211 2334433332 389999999985 5553 399999999999965 45
Q ss_pred HHHHHhHHhcCCC
Q 042599 201 KILKNCCVQCNTG 213 (214)
Q Consensus 201 ~IL~~~~~Al~pg 213 (214)
++|+++++.|+ |
T Consensus 112 ~~l~~~~~~Lk-g 123 (261)
T 3ege_A 112 KSFQEMQRIIR-D 123 (261)
T ss_dssp HHHHHHHHHBC-S
T ss_pred HHHHHHHHHhC-C
Confidence 88999999998 5
No 57
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=96.45 E-value=0.0059 Score=49.31 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHHHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEECL 200 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~~ 200 (214)
...++|+|. |..+..+++...++ +..++.+.. .++|+++.+|+-+ ++|.+ |+++...++|-.+.+
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~--- 115 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD--- 115 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---
T ss_pred CCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-cCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---
Confidence 356899995 77777777766543 234554443 5789999999874 66754 999999999876544
Q ss_pred HHHHHhHHhcCCC
Q 042599 201 KILKNCCVQCNTG 213 (214)
Q Consensus 201 ~IL~~~~~Al~pg 213 (214)
+.|+++++.|+||
T Consensus 116 ~~~~e~~rvLkpg 128 (257)
T 4hg2_A 116 RFWAELRRVARPG 128 (257)
T ss_dssp HHHHHHHHHEEEE
T ss_pred HHHHHHHHHcCCC
Confidence 5789999999987
No 58
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=96.44 E-value=0.0052 Score=48.79 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=57.0
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCcc--ceeeeehhccCCChH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDE 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~ 197 (214)
..++|+|. |..+..+++...++ +..++.+.. ..++++++.+|+.+ ++|.+ |+++...++|.++|
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~- 119 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPD- 119 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCTT-
T ss_pred CEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhcCC-
Confidence 56899996 66667776654332 233333322 24689999999975 45543 99999999999986
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
...+|+++++.|+||
T Consensus 120 -~~~~l~~~~~~L~pg 134 (263)
T 2yqz_A 120 -WPKVLAEAIRVLKPG 134 (263)
T ss_dssp -HHHHHHHHHHHEEEE
T ss_pred -HHHHHHHHHHHCCCC
Confidence 467999999999986
No 59
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=96.43 E-value=0.0023 Score=52.01 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=60.7
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---------CCCceEEecCCCCc-c---cCc--cceeee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---------NHTVVEHVSGHMFI-E---VPN--GQALFM 187 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---------~~~rv~~~~gDff~-~---~P~--~d~y~l 187 (214)
+...++|+|. |..+..+++..+++ +..++.+.. ...++.+..+|+.+ + .|. -|+++.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 136 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence 3457999996 66666677765543 233333321 12478899999986 3 453 399999
Q ss_pred e-hhccCCCh-----HHHHHHHHHhHHhcCCC
Q 042599 188 K-WILSDWDD-----EECLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~-~ILHdw~d-----~~~~~IL~~~~~Al~pg 213 (214)
. ++||.+++ ++..++|+++++.|+||
T Consensus 137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg 168 (293)
T 3thr_A 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168 (293)
T ss_dssp CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred cChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence 8 99999998 99999999999999986
No 60
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=96.40 E-value=0.0043 Score=49.97 Aligned_cols=82 Identities=6% Similarity=-0.042 Sum_probs=59.6
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----------------------CCCceEEecCCCCcc-cC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----------------------NHTVVEHVSGHMFIE-VP 180 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----------------------~~~rv~~~~gDff~~-~P 180 (214)
...++|+|. |..+..++++--++ +..++.+.. ...+|+++.+|+++. .+
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~ 148 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA 148 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc
Confidence 356999995 66666666653322 233443321 136899999999973 22
Q ss_pred c-c--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 181 N-G--QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 181 ~-~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
. + |+++.+.+||..++++-.+.++++++.|+||
T Consensus 149 ~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG 184 (252)
T 2gb4_A 149 NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE 184 (252)
T ss_dssp CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence 2 3 9999999999999988889999999999987
No 61
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.39 E-value=0.0026 Score=51.63 Aligned_cols=82 Identities=10% Similarity=0.018 Sum_probs=59.4
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCccc-Cc-cceeeeehhccCCChH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFIEV-PN-GQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~~~-P~-~d~y~l~~ILHdw~d~ 197 (214)
...++|+|. |..+..+++...++ +..++.+.. ..-+++++.+|+.+.. +. -|+++...++|.++++
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~ 200 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMFLNRE 200 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGGSCGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhhCCHH
Confidence 456899996 55555666653332 223333221 1228999999998743 33 4999999999999999
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
+...+|+++++.|+||
T Consensus 201 ~~~~~l~~~~~~Lkpg 216 (286)
T 3m70_A 201 RVPSIIKNMKEHTNVG 216 (286)
T ss_dssp GHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999986
No 62
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=96.38 E-value=0.0051 Score=52.43 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=57.7
Q ss_pred CceEEccC--CccHHHHHHhC-CCc--------hHHHHhhccC-------------CCceEEecCCCCc-------ccCc
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMHN-------------HTVVEHVSGHMFI-------EVPN 181 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~~-------------~~rv~~~~gDff~-------~~P~ 181 (214)
..++|+|. |..+..+++.. |.. +..++.+... .++|+++.+|+.+ ++|.
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~ 164 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD 164 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCT
T ss_pred CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCC
Confidence 56899996 55556666654 432 2334333321 2689999999986 5664
Q ss_pred c--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 182 G--QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 182 ~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+ |+++...+||.++|. ..+|+++++.|+||
T Consensus 165 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkpg 196 (383)
T 4fsd_A 165 SSVDIVISNCVCNLSTNK--LALFKEIHRVLRDG 196 (383)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEE
T ss_pred CCEEEEEEccchhcCCCH--HHHHHHHHHHcCCC
Confidence 3 999999999999874 68999999999986
No 63
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=96.32 E-value=0.0056 Score=49.08 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=56.7
Q ss_pred CceEEccC--CccHHHHHHhCCC------c-hHHHHhhcc------CCCceEEecCCCCc-ccCcc--ceeeeehhccCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR------M-NNLFNQSMH------NHTVVEHVSGHMFI-EVPNG--QALFMKWILSDW 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~------l-~~v~~~~~~------~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw 194 (214)
..++|+|+ |..+..++++... + +..++.+.. ..++++++.+|+.+ ++|.+ |+++...+||.+
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 142 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHM 142 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTS
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhC
Confidence 56899996 5555666665431 1 223332221 23589999999986 56643 999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+|. ..+|+++++.|+||
T Consensus 143 ~~~--~~~l~~~~~~L~pg 159 (273)
T 3bus_A 143 PDR--GRALREMARVLRPG 159 (273)
T ss_dssp SCH--HHHHHHHHTTEEEE
T ss_pred CCH--HHHHHHHHHHcCCC
Confidence 876 68999999999986
No 64
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=96.29 E-value=0.0033 Score=51.14 Aligned_cols=80 Identities=13% Similarity=0.063 Sum_probs=58.4
Q ss_pred CCceEEccC--CccHHHHHHhCCC-c--------hHHHHhhc----cCCCceEEecCCCCc-ccCc-cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-M--------NNLFNQSM----HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-l--------~~v~~~~~----~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw 194 (214)
...++|+|. |..+..+++.+|. . +..++.+. ....+++++.+|+.+ +.|. -|+++...++|.+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 102 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHM 102 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCGGGC
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChhhcC
Confidence 356899997 5556677777774 2 22333222 123489999999996 3343 4999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+|.. ++|+++++.|+||
T Consensus 103 ~~~~--~~l~~~~~~Lkpg 119 (284)
T 3gu3_A 103 TTPE--TMLQKMIHSVKKG 119 (284)
T ss_dssp SSHH--HHHHHHHHTEEEE
T ss_pred CCHH--HHHHHHHHHcCCC
Confidence 8774 8999999999986
No 65
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0057 Score=49.99 Aligned_cols=80 Identities=5% Similarity=-0.094 Sum_probs=58.4
Q ss_pred CCCceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-------CCCceEEecCCCCc-ccCc------c--c
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-------NHTVVEHVSGHMFI-EVPN------G--Q 183 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-------~~~rv~~~~gDff~-~~P~------~--d 183 (214)
....++|+|. |..+..+++.. |.. +..++.+.. ..++++++.+|+.+ +.+. + |
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 3456899996 66667777654 432 233443322 25799999999986 4433 3 9
Q ss_pred eeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 184 ALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+++...++|.. +..++|+++++.|+||
T Consensus 116 ~V~~~~~l~~~---~~~~~l~~~~~~Lkpg 142 (299)
T 3g5t_A 116 MITAVECAHWF---DFEKFQRSAYANLRKD 142 (299)
T ss_dssp EEEEESCGGGS---CHHHHHHHHHHHEEEE
T ss_pred EEeHhhHHHHh---CHHHHHHHHHHhcCCC
Confidence 99999999999 5678999999999986
No 66
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=96.24 E-value=0.0068 Score=47.51 Aligned_cols=80 Identities=10% Similarity=0.097 Sum_probs=57.4
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC--CCceEEecCCCCc-ccCc--cceeeeehhccCCChH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN--HTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~--~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~ 197 (214)
...++|+|+ |..+..+++..+ ++ +..++.+... ..+++++.+|+.+ +.|. -|+++...+||.+++
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~- 122 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVED- 122 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC-
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccccch-
Confidence 356899996 555556666644 22 3344444332 2479999999986 4553 399999999999975
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
...+|+++++.|+||
T Consensus 123 -~~~~l~~~~~~L~pg 137 (243)
T 3bkw_A 123 -VARLFRTVHQALSPG 137 (243)
T ss_dssp -HHHHHHHHHHHEEEE
T ss_pred -HHHHHHHHHHhcCcC
Confidence 568999999999986
No 67
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=96.24 E-value=0.0044 Score=50.18 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=56.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCcc--cCc--cceeeeehhccC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFIE--VPN--GQALFMKWILSD 193 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~~--~P~--~d~y~l~~ILHd 193 (214)
...++|+|+ |..+..+++....+ +..++.+.. ..++++++.+|+.+. .+. -|++++..+||.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 148 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEW 148 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhc
Confidence 346899997 55555666653322 233333322 126899999999863 343 399999999999
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
++|. .++|+++++.|+||
T Consensus 149 ~~~~--~~~l~~~~~~Lkpg 166 (285)
T 4htf_A 149 VADP--RSVLQTLWSVLRPG 166 (285)
T ss_dssp CSCH--HHHHHHHHHTEEEE
T ss_pred ccCH--HHHHHHHHHHcCCC
Confidence 9876 57999999999986
No 68
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=96.23 E-value=0.0072 Score=45.76 Aligned_cols=81 Identities=9% Similarity=-0.020 Sum_probs=58.4
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc-ccCc-cceeeeehhccCCChH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDE 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~ 197 (214)
..++|+|. |..+..+++..-++ +..++.+.. ..++++++.+|+.+ +.+. -|+++...++|.++++
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~ 113 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAK 113 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGGSCGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhhCCHH
Confidence 47899996 55555666553222 233333221 23479999999986 3333 4999999999999999
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
+..++|+++++.|+||
T Consensus 114 ~~~~~l~~~~~~L~~g 129 (199)
T 2xvm_A 114 TIPGLIANMQRCTKPG 129 (199)
T ss_dssp GHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999986
No 69
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=96.23 E-value=0.0032 Score=51.53 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=42.6
Q ss_pred ceEEecCCCCc-ccC-cc--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 167 VVEHVSGHMFI-EVP-NG--QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 167 rv~~~~gDff~-~~P-~~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+|+|..+|+++ +.| .+ |+++.++|||-++++.-.++|++++++|+||
T Consensus 195 ~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 195 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 245 (274)
T ss_dssp TEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred cCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence 69999999997 466 33 9999999999999999999999999999987
No 70
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=96.20 E-value=0.0088 Score=45.76 Aligned_cols=82 Identities=5% Similarity=0.058 Sum_probs=56.9
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc----CCCceEEecCCCCc-ccCc--cceeeeehhccCCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~ 195 (214)
...++|+|. |.....++.... ++ +..++.+.. ...+++++.+|+.+ +.|. -|+++...++|.++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 103 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMR 103 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCC
Confidence 356899996 544334433321 11 223333221 23578999999985 5553 39999999999999
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
.++..++|+++++.|+||
T Consensus 104 ~~~~~~~l~~~~~~Lkpg 121 (209)
T 2p8j_A 104 KNDVKEAIDEIKRVLKPG 121 (209)
T ss_dssp HHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999986
No 71
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=96.12 E-value=0.0078 Score=47.69 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=56.5
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw 194 (214)
..++|+|. |..+..+++..| .+ +..++.+.. ..++++++.+|+.+ +.|. -|+++...++|.+
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 127 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI 127 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhhc
Confidence 46999996 666677788877 22 233333221 23569999999975 4553 3999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+ -..+|+++++.|+||
T Consensus 128 ~---~~~~l~~~~~~L~pg 143 (257)
T 3f4k_A 128 G---FERGMNEWSKYLKKG 143 (257)
T ss_dssp C---HHHHHHHHHTTEEEE
T ss_pred C---HHHHHHHHHHHcCCC
Confidence 4 457899999999986
No 72
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.11 E-value=0.0076 Score=46.13 Aligned_cols=82 Identities=6% Similarity=-0.065 Sum_probs=58.8
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc---CCCceEEecCCCCc-ccCc--cceeeeehhccCCC-
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWD- 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~- 195 (214)
...++|+|. |..+..+++..+ .+ +..++.+.. ..++++++.+|+.+ ++|. -|+++...++|...
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 122 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLA 122 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTT
T ss_pred CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhcc
Confidence 457899996 666677777765 33 334444332 23689999999986 5553 39999888876544
Q ss_pred ------------hHHHHHHHHHhHHhcCCC
Q 042599 196 ------------DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 ------------d~~~~~IL~~~~~Al~pg 213 (214)
.++..++|+++.+.|+||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 152 (215)
T 2pxx_A 123 GERDPWTVSSEGVHTVDQVLSEVSRVLVPG 152 (215)
T ss_dssp TCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHhCcCC
Confidence 567799999999999986
No 73
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=96.11 E-value=0.0045 Score=49.06 Aligned_cols=79 Identities=9% Similarity=-0.160 Sum_probs=56.4
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCcccC-c-cceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFIEVP-N-GQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~~~P-~-~d~y~l~~ILHdw~ 195 (214)
..++|+|. |..+..+++... +. +..++.+.. ..++|+++.+|+.+..+ . -|+++...++|.++
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~~~~ 117 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAG 117 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGGGTS
T ss_pred CEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChHhcC
Confidence 56899996 666666666643 22 233333321 12589999999986433 3 39999999999998
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
| ..++|+++++.|+||
T Consensus 118 ~--~~~~l~~~~r~Lkpg 133 (256)
T 1nkv_A 118 G--FAGAEELLAQSLKPG 133 (256)
T ss_dssp S--SHHHHHHHTTSEEEE
T ss_pred C--HHHHHHHHHHHcCCC
Confidence 5 578899999999986
No 74
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=96.08 E-value=0.016 Score=54.47 Aligned_cols=83 Identities=4% Similarity=-0.060 Sum_probs=62.5
Q ss_pred CCCceEEccC--CccHHHHHHhCC-C--c------hHHHHhhcc-----------CCCceEEecCCCCc-ccCc--ccee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-R--M------NNLFNQSMH-----------NHTVVEHVSGHMFI-EVPN--GQAL 185 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~--l------~~v~~~~~~-----------~~~rv~~~~gDff~-~~P~--~d~y 185 (214)
....++|+|. |..+..+++..| . + +..++.+.. ...+|+++.+|+.+ +.+. -|++
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 3467999996 666666776663 2 1 234444322 34689999999986 3443 3999
Q ss_pred eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 186 FMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++..+||.+++.....+|+++.+.|+||
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999998
No 75
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.00 E-value=0.0073 Score=48.74 Aligned_cols=80 Identities=11% Similarity=0.018 Sum_probs=55.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc-cceeeeehhccCCChHHHHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDEECLK 201 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~~~~~ 201 (214)
...++|+|. |..+..+++....+ +..++.+....++++++.+|+.+ +.+. -|+++...+||.++|. ..
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~--~~ 135 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAMLHWVKEP--EA 135 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEESCGGGCSCH--HH
T ss_pred CCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcchhhhCcCH--HH
Confidence 356899996 55555565522111 33444444434689999999986 3333 3999999999998865 48
Q ss_pred HHHHhHHhcCCC
Q 042599 202 ILKNCCVQCNTG 213 (214)
Q Consensus 202 IL~~~~~Al~pg 213 (214)
+|+++++.|+||
T Consensus 136 ~l~~~~~~Lkpg 147 (279)
T 3ccf_A 136 AIASIHQALKSG 147 (279)
T ss_dssp HHHHHHHHEEEE
T ss_pred HHHHHHHhcCCC
Confidence 999999999986
No 76
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=95.95 E-value=0.013 Score=48.11 Aligned_cols=78 Identities=12% Similarity=-0.041 Sum_probs=55.8
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDW 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw 194 (214)
..++|+|+ |..+..++++.. ++ +..++.+.. ..++|+++.+|+.+ ++|. -|+++...++|.+
T Consensus 119 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 198 (312)
T 3vc1_A 119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV 198 (312)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS
T ss_pred CEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC
Confidence 46899997 555556666522 21 233333321 23589999999986 5563 3999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+ ..++|+++.+.|+||
T Consensus 199 ~---~~~~l~~~~~~Lkpg 214 (312)
T 3vc1_A 199 D---LHDLFSEHSRFLKVG 214 (312)
T ss_dssp C---HHHHHHHHHHHEEEE
T ss_pred C---HHHHHHHHHHHcCCC
Confidence 4 889999999999986
No 77
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=95.92 E-value=0.02 Score=46.76 Aligned_cols=80 Identities=10% Similarity=-0.054 Sum_probs=58.8
Q ss_pred CceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhccCCCh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDD 196 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d 196 (214)
..++|+|. |..+..++++++.- +..++.+.. ..++|+++.+|+.+. +. -|+++...++|.++|
T Consensus 74 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD~v~~~~~~~~~~d 152 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVDRIVSLGAFEHFAD 152 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCSEEEEESCGGGTTC
T ss_pred CEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCccEEEEcchHHhcCc
Confidence 46899996 55566677765521 233333321 234899999999765 54 499999999999954
Q ss_pred -------HHHHHHHHHhHHhcCCC
Q 042599 197 -------EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 -------~~~~~IL~~~~~Al~pg 213 (214)
+....+|+++.+.|+||
T Consensus 153 ~~~~~~~~~~~~~l~~~~~~Lkpg 176 (302)
T 3hem_A 153 GAGDAGFERYDTFFKKFYNLTPDD 176 (302)
T ss_dssp CSSCCCTTHHHHHHHHHHHSSCTT
T ss_pred cccccchhHHHHHHHHHHHhcCCC
Confidence 78899999999999997
No 78
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=95.90 E-value=0.01 Score=48.98 Aligned_cols=81 Identities=7% Similarity=0.102 Sum_probs=51.9
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhccC----CC-------ceEEecCCC----Cc-----ccCcc-
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMHN----HT-------VVEHVSGHM----FI-----EVPNG- 182 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~~----~~-------rv~~~~gDf----f~-----~~P~~- 182 (214)
..++|+|. |..+..++.... ++ +..++.+... .. .+++...|+ +. +.|.+
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~ 129 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGK 129 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSC
T ss_pred CeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCC
Confidence 46899995 555555554432 22 2344443321 11 256767776 21 24533
Q ss_pred -ceeeeehhccC-CChHHHHHHHHHhHHhcCCC
Q 042599 183 -QALFMKWILSD-WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 183 -d~y~l~~ILHd-w~d~~~~~IL~~~~~Al~pg 213 (214)
|+++...+||- |++++...+|+++++.|+||
T Consensus 130 FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG 162 (302)
T 2vdw_A 130 FNIIDWQFAIHYSFHPRHYATVMNNLSELTASG 162 (302)
T ss_dssp EEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred eeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999985 67666789999999999997
No 79
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=95.85 E-value=0.013 Score=45.00 Aligned_cols=78 Identities=9% Similarity=0.010 Sum_probs=54.0
Q ss_pred CCceEEccCCcc--HHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHH
Q 042599 132 SVPHTKAQSGMD--AFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECL 200 (214)
Q Consensus 132 ~~~~~dvgGG~~--~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~ 200 (214)
...++|+|.|.. +..+ ..+++ +..++.+....++++++.+|+.+ +.|. -|++++..+||.++| ..
T Consensus 37 ~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~ 112 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED--VE 112 (211)
T ss_dssp CSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC--HH
T ss_pred CCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC--HH
Confidence 356899997444 3333 22121 23444444333689999999885 4554 399999999999985 45
Q ss_pred HHHHHhHHhcCCC
Q 042599 201 KILKNCCVQCNTG 213 (214)
Q Consensus 201 ~IL~~~~~Al~pg 213 (214)
++|+++++.|+||
T Consensus 113 ~~l~~~~~~L~pg 125 (211)
T 2gs9_A 113 RVLLEARRVLRPG 125 (211)
T ss_dssp HHHHHHHHHEEEE
T ss_pred HHHHHHHHHcCCC
Confidence 8999999999986
No 80
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=95.81 E-value=0.0076 Score=48.28 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=54.5
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCc-ccCc--cceeeeehhccC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN--GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHd 193 (214)
..++|+|. |..+..+++. |.. +..++.+.. ..++|+++.+|+.+ +.|. -|+++...++|.
T Consensus 48 ~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 126 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYN 126 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGG
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCcee
Confidence 56899997 5555566665 542 233333321 23679999999976 4453 399999999999
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
++ -..+|+++++.|+||
T Consensus 127 ~~---~~~~l~~~~~~Lkpg 143 (267)
T 3kkz_A 127 IG---FERGLNEWRKYLKKG 143 (267)
T ss_dssp TC---HHHHHHHHGGGEEEE
T ss_pred cC---HHHHHHHHHHHcCCC
Confidence 93 367899999999986
No 81
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=95.71 E-value=0.044 Score=44.92 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCceEEccC--CccHHHHHHhCC-C-----c-hHHHHhhcc------------CCCceEEecCCCCcc-----cC--c--
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-R-----M-NNLFNQSMH------------NHTVVEHVSGHMFIE-----VP--N-- 181 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~-----l-~~v~~~~~~------------~~~rv~~~~gDff~~-----~P--~-- 181 (214)
...++|+|. |..+..+++... + + +..++.+.. ...+++++.+|+.+. +| .
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 356899996 666666665322 1 1 233333221 224799999999853 43 2
Q ss_pred cceeeeehhccCC--ChHHHHHHHHHhHHhcCCC
Q 042599 182 GQALFMKWILSDW--DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 182 ~d~y~l~~ILHdw--~d~~~~~IL~~~~~Al~pg 213 (214)
-|+++...+||-. +.++...+|+++++.|+||
T Consensus 115 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 148 (313)
T 3bgv_A 115 FDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148 (313)
T ss_dssp EEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence 3999999999875 4477889999999999986
No 82
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=95.70 E-value=0.028 Score=45.35 Aligned_cols=83 Identities=8% Similarity=-0.043 Sum_probs=58.8
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCc-cc-Cc--cceeeeehhc
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFI-EV-PN--GQALFMKWIL 191 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~-~~-P~--~d~y~l~~IL 191 (214)
....++|+|. |..+..+++... .+ +..++.+.. ...+++++.+|+.+ +. +. -|+++...+|
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 3457899996 655666555422 11 233333321 12579999999996 55 33 3999999999
Q ss_pred cC--CChHHHHHHHHHhHHhcCCC
Q 042599 192 SD--WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 192 Hd--w~d~~~~~IL~~~~~Al~pg 213 (214)
|. .+.++...+|+++++.|+||
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~Lkpg 167 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPG 167 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCC
Confidence 98 78889999999999999986
No 83
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=95.60 E-value=0.019 Score=47.15 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=58.5
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc------CCCceEEecCCCCcccCc-cceeeeehhccCCCh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH------NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDD 196 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~------~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d 196 (214)
..++|+|. |..+..+++... .+ +..++.+.. ..++++++.+|+.+ +|. -|+++...+||.+++
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD~v~~~~~l~~~~~ 170 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVDRIVSIEAFEHFGH 170 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCSEEEEESCGGGTCG
T ss_pred CEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCcCEEEEeChHHhcCH
Confidence 46899996 555556666532 21 233333221 12579999999865 454 499999999999999
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++..++|+++.+.|+||
T Consensus 171 ~~~~~~l~~~~~~Lkpg 187 (318)
T 2fk8_A 171 ENYDDFFKRCFNIMPAD 187 (318)
T ss_dssp GGHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999997
No 84
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=95.53 E-value=0.022 Score=43.33 Aligned_cols=78 Identities=6% Similarity=-0.000 Sum_probs=53.0
Q ss_pred ceEEccC--CccHHHHHHhCCCc------hHHHHhhccC----CCceEEecCCCCc-ccCc--cceeeeehhccCCChHH
Q 042599 134 PHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHN----HTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEE 198 (214)
Q Consensus 134 ~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~----~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~ 198 (214)
.++|+|+ |..+..+++...++ +..++.+... ..+++++.+|+.+ +.|. -|+++.. ++.++.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~ 109 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSSL 109 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHH
Confidence 8999996 55555555543221 2333333221 2379999999986 4553 3998873 44568889
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
..++|+++++.|+||
T Consensus 110 ~~~~l~~~~~~L~pg 124 (202)
T 2kw5_A 110 RQQLYPKVYQGLKPG 124 (202)
T ss_dssp HHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999999997
No 85
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=95.36 E-value=0.023 Score=44.38 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=55.5
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc-cceeeeeh-hccCC-Ch
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN-GQALFMKW-ILSDW-DD 196 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~-~d~y~l~~-ILHdw-~d 196 (214)
..++|+|+ |..+..+++. -++ +..++.+.. ...+++++.+|+.+ +.|. -|++++.. ++|.+ ++
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~ 113 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTE 113 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGCCSH
T ss_pred CeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhcCCH
Confidence 57899997 5545555554 221 223333321 23579999999986 4443 49999876 88877 67
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
++...+|+++++.|+||
T Consensus 114 ~~~~~~l~~~~~~L~pg 130 (243)
T 3d2l_A 114 ADVKQTFDSAARLLTDG 130 (243)
T ss_dssp HHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88999999999999986
No 86
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=95.35 E-value=0.038 Score=45.20 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=59.9
Q ss_pred CCCceEEccCCc----cHHHHHH-hCCCc--------hHHHHhhcc---C--CCceEEecCCCCccc-----C--cc--c
Q 042599 131 GSVPHTKAQSGM----DAFAAAA-KDARM--------NNLFNQSMH---N--HTVVEHVSGHMFIEV-----P--NG--Q 183 (214)
Q Consensus 131 g~~~~~dvgGG~----~~~~~~~-~~P~l--------~~v~~~~~~---~--~~rv~~~~gDff~~~-----P--~~--d 183 (214)
|...|+|+|.|. ...++++ ..|+. +.++..+.+ . ..+++++.+|+.++- | .+ |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 557899999753 3455554 46764 445555432 1 247999999998741 2 11 3
Q ss_pred -----eeeeehhccCCChHH-HHHHHHHhHHhcCCC
Q 042599 184 -----ALFMKWILSDWDDEE-CLKILKNCCVQCNTG 213 (214)
Q Consensus 184 -----~y~l~~ILHdw~d~~-~~~IL~~~~~Al~pg 213 (214)
++++..+||--+|++ ...+|++++++|+||
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG 193 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG 193 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence 688999999999877 689999999999998
No 87
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=95.24 E-value=0.028 Score=43.57 Aligned_cols=78 Identities=14% Similarity=-0.011 Sum_probs=54.0
Q ss_pred CCceEEccC--CccHHHHHHhC-CCc-hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHHHHHHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKD-ARM-NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECLKILK 204 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~-P~l-~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~~IL~ 204 (214)
...++|+|+ |..+..+++.. -+. +..++.+... +++++.+|+.+ +.|. -|++++..+||.+++. ..+|+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~ 123 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALK 123 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--HHHHH
Confidence 467999996 66666555440 000 2333333332 78999999875 4443 3999999999999765 58999
Q ss_pred HhHHhcCCC
Q 042599 205 NCCVQCNTG 213 (214)
Q Consensus 205 ~~~~Al~pg 213 (214)
++++.|+||
T Consensus 124 ~~~~~L~pg 132 (219)
T 1vlm_A 124 EAYRILKKG 132 (219)
T ss_dssp HHHHHEEEE
T ss_pred HHHHHcCCC
Confidence 999999886
No 88
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=95.24 E-value=0.038 Score=43.55 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=55.8
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCc-ccCc-cceeeee-hhccCCChH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFI-EVPN-GQALFMK-WILSDWDDE 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~-~~P~-~d~y~l~-~ILHdw~d~ 197 (214)
..++|+|. |..+..+++...++ +..++.+.. ...+++++.+|+.+ +.|. -|++++. ..+|.++++
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~ 122 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHH
T ss_pred CEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchhcCCHH
Confidence 46899996 55555666553322 233333221 23479999999986 3443 3988875 566778889
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
+..++|+++++.|+||
T Consensus 123 ~~~~~l~~~~~~L~pg 138 (252)
T 1wzn_A 123 DLRKLFSKVAEALKPG 138 (252)
T ss_dssp HHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999986
No 89
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=95.01 E-value=0.068 Score=39.82 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=54.8
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCC--ceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHT--VVEHVSGHMFIEVPN--GQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~--rv~~~~gDff~~~P~--~d~y~l~~ILHdw~ 195 (214)
..++|+|. |..+..+++....+ +..++.+.. ..+ |++++.+|+.++.+. -|++++...+| |+
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~-~~ 132 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIR-AG 132 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCST-TC
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCcc-cc
Confidence 56899996 55555555552211 223332221 122 599999999987664 39999988777 56
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
.+....+|+++.+.|+||
T Consensus 133 ~~~~~~~l~~~~~~L~~g 150 (194)
T 1dus_A 133 KEVLHRIIEEGKELLKDN 150 (194)
T ss_dssp HHHHHHHHHHHHHHEEEE
T ss_pred hhHHHHHHHHHHHHcCCC
Confidence 778889999999999886
No 90
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=94.94 E-value=0.023 Score=47.57 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=59.2
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc----CCCceEEecCCCCcccCc-cceeeeehhccC---C
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH----NHTVVEHVSGHMFIEVPN-GQALFMKWILSD---W 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~----~~~rv~~~~gDff~~~P~-~d~y~l~~ILHd---w 194 (214)
..++|+|+ |..+..+++..|.. +..++.+.. ..-.++++.+|+++..+. -|+++...++|. +
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~~~~g~~~ 277 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQT 277 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCCSSSHH
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCCcccCccC
Confidence 46899996 66666778888753 223333321 223467889999875454 499999999997 5
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+.+...++|+++++.|+||
T Consensus 278 ~~~~~~~~l~~~~~~Lkpg 296 (343)
T 2pjd_A 278 SLDAAQTLIRGAVRHLNSG 296 (343)
T ss_dssp HHHHHHHHHHHHGGGEEEE
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 7788999999999999986
No 91
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=94.91 E-value=0.052 Score=47.05 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=53.6
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc--------------CCCceEEecCCCCc-ccC----cc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH--------------NHTVVEHVSGHMFI-EVP----NG 182 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~--------------~~~rv~~~~gDff~-~~P----~~ 182 (214)
...++|+|. |..+..++...+.. +..++.+.. ...+|+++.||+++ +++ .+
T Consensus 174 gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~a 253 (438)
T 3uwp_A 174 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANT 253 (438)
T ss_dssp TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTC
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCc
Confidence 356999995 66677777665532 122221110 13689999999996 342 46
Q ss_pred ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 183 QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
|++++..++| | .+-...|+.+.+.|+||
T Consensus 254 DVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPG 281 (438)
T 3uwp_A 254 SVIFVNNFAF-G--PEVDHQLKERFANMKEG 281 (438)
T ss_dssp SEEEECCTTC-C--HHHHHHHHHHHTTSCTT
T ss_pred cEEEEccccc-C--chHHHHHHHHHHcCCCC
Confidence 9999888875 2 45566778999999998
No 92
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=94.90 E-value=0.029 Score=44.74 Aligned_cols=81 Identities=7% Similarity=0.007 Sum_probs=51.9
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHHH
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEEC 199 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~~ 199 (214)
....++|+|+ |..+..+++...++ +..++.+...... .++.+|+.+ +.|.+ |++++..+++.|.++ .
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~ 131 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-K 131 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-H
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhcccc-H
Confidence 3456899996 55555555553322 2334433322212 278889875 45543 999988877666444 7
Q ss_pred HHHHHHhHHhcCCC
Q 042599 200 LKILKNCCVQCNTG 213 (214)
Q Consensus 200 ~~IL~~~~~Al~pg 213 (214)
..+|+++++.|+||
T Consensus 132 ~~~l~~~~~~Lkpg 145 (260)
T 2avn_A 132 DKAFSEIRRVLVPD 145 (260)
T ss_dssp HHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHcCCC
Confidence 88999999999986
No 93
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=94.82 E-value=0.036 Score=43.36 Aligned_cols=89 Identities=7% Similarity=0.062 Sum_probs=55.6
Q ss_pred HHHHHhcCCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----cCCCceEEecCCCCcc----cCcc--
Q 042599 124 LKNALLEGSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----HNHTVVEHVSGHMFIE----VPNG-- 182 (214)
Q Consensus 124 ~~~~~~~g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----~~~~rv~~~~gDff~~----~P~~-- 182 (214)
+.+........++|+|. |..+..+++.+|+. +..+..+. ...++|+++.+|..+. +|.+
T Consensus 27 ~~~~f~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~ 106 (218)
T 3dxy_A 27 FPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSL 106 (218)
T ss_dssp HHHHHSSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCE
T ss_pred HHHHcCCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCCh
Confidence 33333334467899995 77777888888863 23333332 1245799999998753 5543
Q ss_pred ceeeeehhccCCChHHH-------HHHHHHhHHhcCCC
Q 042599 183 QALFMKWILSDWDDEEC-------LKILKNCCVQCNTG 213 (214)
Q Consensus 183 d~y~l~~ILHdw~d~~~-------~~IL~~~~~Al~pg 213 (214)
|.+++-... -|+.... ..+|+.+++.|+||
T Consensus 107 d~v~~~~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpG 143 (218)
T 3dxy_A 107 RMVQLFFPD-PWHKARHNKRRIVQVPFAELVKSKLQLG 143 (218)
T ss_dssp EEEEEESCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred heEEEeCCC-CccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence 766654222 2444332 24899999999987
No 94
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=94.80 E-value=0.052 Score=41.43 Aligned_cols=76 Identities=7% Similarity=-0.095 Sum_probs=54.8
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccC---ccceeeeehhccCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVP---NGQALFMKWILSDW 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P---~~d~y~l~~ILHdw 194 (214)
..++|+|. |..+..+++..|.. +..++.+.. ..++++++.+|+.+..+ +-|++++...++
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~-- 119 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG-- 119 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT--
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc--
Confidence 56899996 66666777777653 233333322 23689999999987655 249988887776
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+..++|+++.+.|+||
T Consensus 120 ---~~~~~l~~~~~~Lkpg 135 (204)
T 3e05_A 120 ---MLEEIIDAVDRRLKSE 135 (204)
T ss_dssp ---CHHHHHHHHHHHCCTT
T ss_pred ---CHHHHHHHHHHhcCCC
Confidence 5668999999999997
No 95
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=94.78 E-value=0.055 Score=39.99 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=51.9
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----C-CCceEEecCCCCcccCc----cceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN----GQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~----~d~y~l~~ILH 192 (214)
..++|+|. |..+..+++..|.. +..++.+.. . ..++ ++.+|..+.+|. -|++++...+|
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~ 105 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLT 105 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TT
T ss_pred CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCccc
Confidence 46899997 55566677777743 233433321 1 2378 888998876663 39999999988
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
. ..+|+++.+.|+||
T Consensus 106 ~------~~~l~~~~~~L~~g 120 (178)
T 3hm2_A 106 A------PGVFAAAWKRLPVG 120 (178)
T ss_dssp C------TTHHHHHHHTCCTT
T ss_pred H------HHHHHHHHHhcCCC
Confidence 7 78999999999987
No 96
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=94.48 E-value=0.073 Score=40.85 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=52.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc-------hHHHHhhccCCCceEEecCCCCc---ccCc--cceeeeehhccCCChH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHNHTVVEHVSGHMFI---EVPN--GQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~~~rv~~~~gDff~---~~P~--~d~y~l~~ILHdw~d~ 197 (214)
...++|+|+ |..+..+++. +.- +..++.+.... .+++.+|+.+ +.|. -|++++..+||.+++.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~ 109 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP 109 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence 356899997 5555556655 421 23344333322 3788889874 3443 3999999999999876
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
..+|+++++.|+||
T Consensus 110 --~~~l~~~~~~L~~g 123 (230)
T 3cc8_A 110 --WAVIEKVKPYIKQN 123 (230)
T ss_dssp --HHHHHHTGGGEEEE
T ss_pred --HHHHHHHHHHcCCC
Confidence 48999999999886
No 97
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=94.36 E-value=0.21 Score=38.50 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-c--cCcc--ceeeeehh
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-E--VPNG--QALFMKWI 190 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~--~P~~--d~y~l~~I 190 (214)
....++|+|. |..+..+++.+|+. +..++.+.. ..++|+++.+|..+ + +|.+ |.+++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 3456899995 66777888888864 233433322 24679999999875 2 5543 76654321
Q ss_pred ccCCChHH-------HHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEE-------CLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~-------~~~IL~~~~~Al~pg 213 (214)
-.|.... ...+|+.+.+.|+||
T Consensus 118 -~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg 146 (213)
T 2fca_A 118 -DPWPKKRHEKRRLTYSHFLKKYEEVMGKG 146 (213)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred -CCCcCccccccccCcHHHHHHHHHHcCCC
Confidence 1244321 357899999999997
No 98
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=94.36 E-value=0.024 Score=46.74 Aligned_cols=81 Identities=9% Similarity=-0.054 Sum_probs=50.1
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc---Cc--cceeeee
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV---PN--GQALFMK 188 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~---P~--~d~y~l~ 188 (214)
..++|+|+ |..+..+++..|.. +.+++.+.. ..++++++.+|.++.. +. -|+++..
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d 176 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIID 176 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEEC
Confidence 46899997 55566666654532 344443322 2478999999988532 43 3999997
Q ss_pred hhccCCChHHH--HHHHHHhHHhcCCC
Q 042599 189 WILSDWDDEEC--LKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~~~--~~IL~~~~~Al~pg 213 (214)
...+.++++.. ..+++++++.|+||
T Consensus 177 ~~~~~~~~~~l~~~~~l~~~~~~Lkpg 203 (304)
T 3bwc_A 177 TTDPAGPASKLFGEAFYKDVLRILKPD 203 (304)
T ss_dssp CC---------CCHHHHHHHHHHEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCC
Confidence 77777665544 68999999999986
No 99
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=94.34 E-value=0.13 Score=39.56 Aligned_cols=82 Identities=10% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-c--cCcc--ceeeeehh
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-E--VPNG--QALFMKWI 190 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~--~P~~--d~y~l~~I 190 (214)
....++|+|. |..+..+++.+|+. +..++.+.. ..++|+++.+|+.+ + +|.+ |++++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 3456899996 66667788888863 233333322 23689999999986 2 4543 88876643
Q ss_pred ccCCChH-------HHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDE-------ECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~-------~~~~IL~~~~~Al~pg 213 (214)
. .|... ....+|+++.+.|+||
T Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 149 (214)
T 1yzh_A 121 D-PWPKKRHEKRRLTYKTFLDTFKRILPEN 149 (214)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred C-CccccchhhhccCCHHHHHHHHHHcCCC
Confidence 2 24321 2357999999999987
No 100
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=94.29 E-value=0.023 Score=50.09 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=58.2
Q ss_pred CCceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc------CCCceEEecCCCCc-ccCc-cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH------NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~------~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw 194 (214)
...++|+|+ |..+..+++ .|.. ...++.+.. ..++|+++.+|+++ +.|. .|+++...++|.|
T Consensus 159 ~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~ 237 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML 237 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHHH
T ss_pred CCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchHhc
Confidence 356899997 444444444 4531 223332221 13689999999997 6664 5999998888999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
.+++...+|.++++.|+||
T Consensus 238 ~~e~~~~~l~~~~~~Lkpg 256 (480)
T 3b3j_A 238 FNERMLESYLHAKKYLKPS 256 (480)
T ss_dssp TCHHHHHHHHHGGGGEEEE
T ss_pred CcHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886
No 101
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=94.08 E-value=0.061 Score=42.57 Aligned_cols=81 Identities=7% Similarity=0.035 Sum_probs=49.7
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc-----------cCCCceEEecCCCCcc----cCcc--ce
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM-----------HNHTVVEHVSGHMFIE----VPNG--QA 184 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~-----------~~~~rv~~~~gDff~~----~P~~--d~ 184 (214)
...++|+|. |..+..+++.+|+. +..++.+. ...++|+++.+|..+. +|++ |.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 356899995 77777888888863 23333221 2246799999998763 4444 77
Q ss_pred eeeehhccCCChHH-------HHHHHHHhHHhcCCC
Q 042599 185 LFMKWILSDWDDEE-------CLKILKNCCVQCNTG 213 (214)
Q Consensus 185 y~l~~ILHdw~d~~-------~~~IL~~~~~Al~pg 213 (214)
+++... -.|.... ...+|+.+++.|+||
T Consensus 127 v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpG 161 (235)
T 3ckk_A 127 MFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVG 161 (235)
T ss_dssp EEEESC-C-----------CCCHHHHHHHHHHEEEE
T ss_pred EEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence 665311 1233211 136999999999987
No 102
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=94.06 E-value=0.038 Score=47.05 Aligned_cols=81 Identities=9% Similarity=0.000 Sum_probs=56.9
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc--------CCCceEEecCCCCcccCc--cceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH--------NHTVVEHVSGHMFIEVPN--GQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~--------~~~rv~~~~gDff~~~P~--~d~y~l~~ILH 192 (214)
..++|+|. |.....+++.+|.. +..++.+.. ...+++++.+|+++++|. -|++++.-.+|
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~nppfh 303 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH 303 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCCcc
Confidence 56899996 66667788888753 223333221 113689999999998874 39999988887
Q ss_pred C---CChHHHHHHHHHhHHhcCCC
Q 042599 193 D---WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 d---w~d~~~~~IL~~~~~Al~pg 213 (214)
. .++....++|+++.+.|+||
T Consensus 304 ~~~~~~~~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 304 QQHALTDNVAWEMFHHARRCLKIN 327 (375)
T ss_dssp ------CCHHHHHHHHHHHHEEEE
T ss_pred cCcccCHHHHHHHHHHHHHhCCCC
Confidence 4 45667778999999999986
No 103
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=94.04 E-value=0.071 Score=42.90 Aligned_cols=82 Identities=9% Similarity=0.013 Sum_probs=55.5
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeee------
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMK------ 188 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~------ 188 (214)
...++|+|. |..+..+++..|.. +..++.+.. ..++++++.+|++++.|. -|+++..
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~~ 189 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDE 189 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBCT
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCCc
Confidence 346899996 55666777777753 223332221 234799999999988753 3998876
Q ss_pred -------hhccCCCh----------HHHHHHHHHhHHhcCCC
Q 042599 189 -------WILSDWDD----------EECLKILKNCCVQCNTG 213 (214)
Q Consensus 189 -------~ILHdw~d----------~~~~~IL~~~~~Al~pg 213 (214)
.+++.+++ +...++++++.+.|+||
T Consensus 190 ~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg 231 (276)
T 2b3t_A 190 QDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 231 (276)
T ss_dssp TCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred cccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 34443332 56688999999999886
No 104
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=94.01 E-value=0.0068 Score=46.36 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=43.5
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCC----CceEEecCCCCcccCc-----c--ceeeee--
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNH----TVVEHVSGHMFIEVPN-----G--QALFMK-- 188 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~----~rv~~~~gDff~~~P~-----~--d~y~l~-- 188 (214)
...++|+|. |..+..+++..|.. +..++.+.... .+++++.+|++++++. + |+++..
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp 110 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPP 110 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEECCC
T ss_pred CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEECCC
Confidence 356899996 66666777877743 22333332211 1789999999886553 3 888873
Q ss_pred ----hhccCCChHHH------------------HHHHHHhHHhcCCC
Q 042599 189 ----WILSDWDDEEC------------------LKILKNCCVQCNTG 213 (214)
Q Consensus 189 ----~ILHdw~d~~~------------------~~IL~~~~~Al~pg 213 (214)
..+|.++++.. .++|+++.+.|+||
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 111 YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp CCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 45555555444 78999999999987
No 105
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=93.93 E-value=0.14 Score=40.09 Aligned_cols=82 Identities=21% Similarity=0.138 Sum_probs=52.4
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc---------hHHHHhh---cc-----CCCceEEecCCCCcccCc--cceeeeeh
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM---------NNLFNQS---MH-----NHTVVEHVSGHMFIEVPN--GQALFMKW 189 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l---------~~v~~~~---~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ 189 (214)
....++|+|. |..+..+++++|.. +.+++.+ .. ..++|+++.+|..+- |. .|++..-.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEEE
Confidence 3456899995 66666777667753 2344433 22 235799999998653 53 25555555
Q ss_pred hccCCChHHH------HHHHHHhHHhcCCC
Q 042599 190 ILSDWDDEEC------LKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~d~~~------~~IL~~~~~Al~pg 213 (214)
+...|+.... ..+|+.+++.|+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG 132 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKE 132 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCC
Confidence 5556665311 35799999999987
No 106
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=93.77 E-value=0.065 Score=44.91 Aligned_cols=81 Identities=10% Similarity=0.029 Sum_probs=56.5
Q ss_pred CCceEEccC--CccHHHHHHhCCC-------chHHHHhhc------cCCCceEEecCCCCc-ccCc-cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-------MNNLFNQSM------HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-------l~~v~~~~~------~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw 194 (214)
...++|+|. |..+..+++. +. ....++.+. ...++|+++.+|+.+ +.|. -|+++...++|.|
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~ 129 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML 129 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTTB
T ss_pred cCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhcC
Confidence 356899997 4444444443 32 111222221 113689999999986 4554 5999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
..+.....|+++++.|+||
T Consensus 130 ~~~~~~~~l~~~~~~Lkpg 148 (348)
T 2y1w_A 130 FNERMLESYLHAKKYLKPS 148 (348)
T ss_dssp TTTSHHHHHHHGGGGEEEE
T ss_pred ChHHHHHHHHHHHhhcCCC
Confidence 9888899999999999886
No 107
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=93.75 E-value=0.048 Score=42.74 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=54.7
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc----CCCceEEecCCCCc---ccCcc--ceeee-ehh--
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH----NHTVVEHVSGHMFI---EVPNG--QALFM-KWI-- 190 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~----~~~rv~~~~gDff~---~~P~~--d~y~l-~~I-- 190 (214)
...++|+|. |..+..+.+..+ .+ +..++.+.. ...+++++.+|+.+ ++|.+ |+++. .+.
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~ 140 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 140 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccc
Confidence 456899996 554555544333 11 233443322 23679999999875 46643 98877 443
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.|++..+.-..+|+++++.|+||
T Consensus 141 ~~~~~~~~~~~~l~~~~r~Lkpg 163 (236)
T 1zx0_A 141 EETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp GGGTTTHHHHHHHHTHHHHEEEE
T ss_pred hhhhhhhhHHHHHHHHHHhcCCC
Confidence 66777777788999999999987
No 108
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=93.73 E-value=0.065 Score=43.35 Aligned_cols=80 Identities=6% Similarity=0.019 Sum_probs=49.9
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCC----CceEEecCCC-C-cccCc-cceeeeehhccCCChH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNH----TVVEHVSGHM-F-IEVPN-GQALFMKWILSDWDDE 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~----~rv~~~~gDf-f-~~~P~-~d~y~l~~ILHdw~d~ 197 (214)
..++|+|. |..+..++++..++ +..++.+.... -.+.+...++ . ...+. -|+++...+||.|+++
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~ 126 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTE 126 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHH
T ss_pred CEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhCCHH
Confidence 56899997 45555566654432 23344333211 1222222232 1 11122 3999999999999999
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
+....|+++.+.+ ||
T Consensus 127 ~~~~~l~~l~~lL-PG 141 (261)
T 3iv6_A 127 EARRACLGMLSLV-GS 141 (261)
T ss_dssp HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHhC-cC
Confidence 9999999999999 76
No 109
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=93.66 E-value=0.078 Score=42.25 Aligned_cols=80 Identities=5% Similarity=-0.103 Sum_probs=52.4
Q ss_pred CCceEEccC--CccHHHHHHhC-CCc-------hH-------HHHhhcc------CCCceEEecCC-CCc-c--cCcc--
Q 042599 132 SVPHTKAQS--GMDAFAAAAKD-ARM-------NN-------LFNQSMH------NHTVVEHVSGH-MFI-E--VPNG-- 182 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~-P~l-------~~-------v~~~~~~------~~~rv~~~~gD-ff~-~--~P~~-- 182 (214)
...++|+|. |..+..++++. |+. .. .++.+.. ..++|+++.+| ++. . +|.+
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 356899996 66666666664 421 11 2333321 12689999998 663 3 3433
Q ss_pred ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 183 QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
|+++...+||.+++... +++.++..++||
T Consensus 124 D~v~~~~~l~~~~~~~~--~~~~~~~l~~~g 152 (275)
T 3bkx_A 124 DRVVLAHSLWYFASANA--LALLFKNMAAVC 152 (275)
T ss_dssp SEEEEESCGGGSSCHHH--HHHHHHHHTTTC
T ss_pred EEEEEccchhhCCCHHH--HHHHHHHHhCCC
Confidence 99999999999998764 677777766655
No 110
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=93.65 E-value=0.035 Score=42.63 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=53.1
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcc----cC-c--cceeeeehhccCCCh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIE----VP-N--GQALFMKWILSDWDD 196 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~----~P-~--~d~y~l~~ILHdw~d 196 (214)
...++|+|. |..+..+++...++ +..++.+... .+++++.+|+.+. .+ . -|+++...+|| +.|
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~ 130 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD 130 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchhh-hhh
Confidence 467999997 55555566553332 3344444443 6778888887642 22 2 39999999999 544
Q ss_pred HHHHHHHHHhHHhcCCC
Q 042599 197 EECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~~~~~IL~~~~~Al~pg 213 (214)
...+|+++++.|+||
T Consensus 131 --~~~~l~~~~~~L~pg 145 (227)
T 3e8s_A 131 --IIELLSAMRTLLVPG 145 (227)
T ss_dssp --CHHHHHHHHHTEEEE
T ss_pred --HHHHHHHHHHHhCCC
Confidence 458999999999986
No 111
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=93.60 E-value=0.066 Score=42.27 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=50.9
Q ss_pred CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccC
Q 042599 133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHd 193 (214)
..++|+|. |..+..+++. .|.. +..++.+.. ..++++++.+|+.+++|. .|++++ |
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~-----~ 169 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVIL-----D 169 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEE-----C
T ss_pred CEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEE-----C
Confidence 56899996 5566667776 5532 233433322 235699999999988885 388876 4
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
+++. ..+|+++.+.|+||
T Consensus 170 ~~~~--~~~l~~~~~~L~~g 187 (255)
T 3mb5_A 170 LPQP--ERVVEHAAKALKPG 187 (255)
T ss_dssp SSCG--GGGHHHHHHHEEEE
T ss_pred CCCH--HHHHHHHHHHcCCC
Confidence 5544 46899999999886
No 112
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=92.91 E-value=0.17 Score=41.50 Aligned_cols=82 Identities=9% Similarity=-0.066 Sum_probs=46.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc----------CCCceEEecCCCCcccC--c--cceeee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH----------NHTVVEHVSGHMFIEVP--N--GQALFM 187 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~----------~~~rv~~~~gDff~~~P--~--~d~y~l 187 (214)
...++|+|| |..+.++++..|.. +.+++.+.. ..+|++++.+|.++.++ . -|+++.
T Consensus 84 ~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvIi~ 163 (294)
T 3adn_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS 163 (294)
T ss_dssp CCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEEEE
T ss_pred CCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEEEE
Confidence 356899997 55556666654422 234443321 24699999999987543 2 288887
Q ss_pred ehhccCCChHHH--HHHHHHhHHhcCCC
Q 042599 188 KWILSDWDDEEC--LKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~ILHdw~d~~~--~~IL~~~~~Al~pg 213 (214)
.-..+.-+++.. ...+++++++|+||
T Consensus 164 D~~~p~~~~~~l~~~~f~~~~~~~Lkpg 191 (294)
T 3adn_A 164 DCTDPIGPGESLFTSAFYEGCKRCLNPG 191 (294)
T ss_dssp CC----------CCHHHHHHHHHTEEEE
T ss_pred CCCCccCcchhccHHHHHHHHHHhcCCC
Confidence 433222122211 67999999999886
No 113
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=92.74 E-value=0.25 Score=38.97 Aligned_cols=77 Identities=4% Similarity=-0.039 Sum_probs=53.9
Q ss_pred CceEEccCC--ccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehhccC
Q 042599 133 VPHTKAQSG--MDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgGG--~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~ILHd 193 (214)
..+.|+|.| ..+..+++..|.. +..++.+.. ..++|++..+|.|+++|. .|++++..+
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~--- 93 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM--- 93 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE---
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC---
Confidence 578999964 4455666777742 233333322 235899999999998883 488887754
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
..+....||..+.+.|+|+
T Consensus 94 -Gg~~i~~Il~~~~~~L~~~ 112 (225)
T 3kr9_A 94 -GGRLIARILEEGLGKLANV 112 (225)
T ss_dssp -CHHHHHHHHHHTGGGCTTC
T ss_pred -ChHHHHHHHHHHHHHhCCC
Confidence 4566789999999988875
No 114
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=92.73 E-value=0.082 Score=41.76 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=48.4
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-------------CCCceEEecCCCCcccC----cc--c
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-------------NHTVVEHVSGHMFIEVP----NG--Q 183 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-------------~~~rv~~~~gDff~~~P----~~--d 183 (214)
..++|+|. |..+..+++..|+. +..++.+.. ..++|+++.+|.++.+| .+ |
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d 130 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLS 130 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEE
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccC
Confidence 56899996 66677788888862 233332211 23679999999987444 33 3
Q ss_pred eeeeehhccCCChHHH-----------HHHHHHhHHhcCCC
Q 042599 184 ALFMKWILSDWDDEEC-----------LKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~~ILHdw~d~~~-----------~~IL~~~~~Al~pg 213 (214)
.++ ++++|... ..+|+++.+.|+||
T Consensus 131 ~v~-----~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg 166 (246)
T 2vdv_E 131 KMF-----FCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG 166 (246)
T ss_dssp EEE-----EESCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred EEE-----EECCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence 333 23344321 47999999999886
No 115
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=92.63 E-value=0.12 Score=43.11 Aligned_cols=80 Identities=10% Similarity=0.014 Sum_probs=54.7
Q ss_pred ceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc---ccCc--cceeeeehhccC
Q 042599 134 PHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI---EVPN--GQALFMKWILSD 193 (214)
Q Consensus 134 ~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~---~~P~--~d~y~l~~ILHd 193 (214)
.++|+|| |..+..+++.+|.. +.+++.+.. ..+|++++.+|.++ ..+. -|+++..-..|.
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA 171 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc
Confidence 6899997 55666777778865 345555432 24789999999875 3443 399888655454
Q ss_pred CChHH--HHHHHHHhHHhcCCC
Q 042599 194 WDDEE--CLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~--~~~IL~~~~~Al~pg 213 (214)
..... ....+++|++.|+||
T Consensus 172 ~~~~~L~t~efl~~~~r~Lkpg 193 (317)
T 3gjy_A 172 ITPQNFTTVEFFEHCHRGLAPG 193 (317)
T ss_dssp CCCGGGSBHHHHHHHHHHEEEE
T ss_pred ccchhhhHHHHHHHHHHhcCCC
Confidence 33322 267899999999876
No 116
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=92.54 E-value=0.13 Score=38.31 Aligned_cols=75 Identities=7% Similarity=-0.000 Sum_probs=52.5
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccCcc--ceeeeehhccCCChH-----
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVPNG--QALFMKWILSDWDDE----- 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P~~--d~y~l~~ILHdw~d~----- 197 (214)
..++|+|. |..+..++++. .+ +..++. ..+++++.+|++++.+.+ |+++..-.+|..++.
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~ 99 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG 99 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred CeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence 47899996 55555566555 32 122332 568999999999987743 999998888866554
Q ss_pred --HHHHHHHHhHHhcCCC
Q 042599 198 --ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 --~~~~IL~~~~~Al~pg 213 (214)
+...+++++.+.+ ||
T Consensus 100 ~~~~~~~~~~~~~~l-pg 116 (170)
T 3q87_B 100 GYLGREVIDRFVDAV-TV 116 (170)
T ss_dssp CGGGCHHHHHHHHHC-CS
T ss_pred CcchHHHHHHHHhhC-CC
Confidence 5667888888777 54
No 117
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=92.45 E-value=0.038 Score=43.66 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=36.5
Q ss_pred e-EEecCCCCccc--Cc---c--ceeeeehhccCCC--hHHHHHHHHHhHHhcCCC
Q 042599 168 V-EHVSGHMFIEV--PN---G--QALFMKWILSDWD--DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 168 v-~~~~gDff~~~--P~---~--d~y~l~~ILHdw~--d~~~~~IL~~~~~Al~pg 213 (214)
| +++.+|+.+.. |. + |+++...+||..+ .++-..+|+++++.|+||
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 191 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 191 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC
Confidence 8 99999998632 22 3 9999999999433 347789999999999987
No 118
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=92.19 E-value=0.19 Score=38.11 Aligned_cols=76 Identities=5% Similarity=-0.010 Sum_probs=51.5
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw 194 (214)
...++|+|. |..+..++...|.. +..++.+.. ..++++++.+|+.+..|. -|+++... +++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~-~~~- 143 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA-FAS- 143 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC-SSS-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec-cCC-
Confidence 357899996 77777888877753 233333221 234599999999975553 39888653 233
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
...+|+++.+.|+||
T Consensus 144 ----~~~~l~~~~~~L~~g 158 (207)
T 1jsx_A 144 ----LNDMVSWCHHLPGEQ 158 (207)
T ss_dssp ----HHHHHHHHTTSEEEE
T ss_pred ----HHHHHHHHHHhcCCC
Confidence 458999999999886
No 119
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=92.19 E-value=0.18 Score=40.52 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=50.2
Q ss_pred CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccC
Q 042599 133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHd 193 (214)
..++|+|+ |..+..+++. .|.. +..++.+.. ..++++++.+|+.+++|. -|++++ +
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~-----~ 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA-----D 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEE-----C
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEE-----c
Confidence 46899996 5555666666 5532 233333321 136899999999987774 398887 4
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
+++. .++|+++.+.|+||
T Consensus 187 ~~~~--~~~l~~~~~~Lkpg 204 (275)
T 1yb2_A 187 IPDP--WNHVQKIASMMKPG 204 (275)
T ss_dssp CSCG--GGSHHHHHHTEEEE
T ss_pred CcCH--HHHHHHHHHHcCCC
Confidence 4443 47899999999886
No 120
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=91.94 E-value=0.33 Score=37.70 Aligned_cols=77 Identities=9% Similarity=0.071 Sum_probs=50.2
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhc---cCCCceEEecCCCCcc---cC--c-cceeeeehhcc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM---HNHTVVEHVSGHMFIE---VP--N-GQALFMKWILS 192 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~---~~~~rv~~~~gDff~~---~P--~-~d~y~l~~ILH 192 (214)
...++|+|. |..+..+++..|.. +..++.+. ...++++++.+|+.++ .| . -|+++ |
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~-----~ 149 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY-----E 149 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE-----E
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE-----E
Confidence 356899996 56666677776631 23333222 1237899999999862 23 2 37776 7
Q ss_pred CCChH-HHHHHHHHhHHhcCCC
Q 042599 193 DWDDE-ECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~-~~~~IL~~~~~Al~pg 213 (214)
+.++. ....+|+++.+.|+||
T Consensus 150 ~~~~~~~~~~~l~~~~~~Lkpg 171 (230)
T 1fbn_A 150 DVAQPNQAEILIKNAKWFLKKG 171 (230)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEE
T ss_pred ecCChhHHHHHHHHHHHhCCCC
Confidence 76654 4466699999999886
No 121
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=91.64 E-value=0.038 Score=43.04 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=50.5
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCcccC---cc--ceeeeehhccCCChHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFIEVP---NG--QALFMKWILSDWDDEE 198 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~~~P---~~--d~y~l~~ILHdw~d~~ 198 (214)
...++|+|. |..+..+++....+ +..++.+....++++++.+|+.+.+| .+ |+++.. .+
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~--------~~ 120 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR--------RG 120 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------SC
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------CC
Confidence 356999996 55555666653322 34455554446789999999987555 33 888876 24
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
...+|+++++.|+||
T Consensus 121 ~~~~l~~~~~~Lkpg 135 (226)
T 3m33_A 121 PTSVILRLPELAAPD 135 (226)
T ss_dssp CSGGGGGHHHHEEEE
T ss_pred HHHHHHHHHHHcCCC
Confidence 557788888888886
No 122
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.15 E-value=0.045 Score=37.26 Aligned_cols=43 Identities=9% Similarity=0.184 Sum_probs=38.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||..+|++++.+.+.++.|...|+++.. .+.|.+|+.+..+..
T Consensus 26 La~~~~ls~~~~~~~l~~L~~~GLI~~~----------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 26 IMYGANLSYALTGRYIKMLMDLEIIRQE----------GKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHHCCCeEEE----------CCeeEEChhHHHHHH
Confidence 8899999999999999999999999987 456999999987653
No 123
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=91.12 E-value=0.15 Score=35.66 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=39.3
Q ss_pred cCCCC--CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCC
Q 042599 20 LPKNN--KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPN 73 (214)
Q Consensus 20 LA~~~--~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 73 (214)
||+.+ |++...+.+-|+.|...|+++.. . .+.|++|+.++.++..
T Consensus 33 LA~~l~~giS~~aVs~rL~~Le~~GLV~~~-----~----rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 33 LEDRDEIRISKSSVSRRLKKLADHDLLQPL-----A----NGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-----S----TTCEEECHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCEEec-----C----CceEEECchHHHHHHH
Confidence 99999 99999999999999999999985 1 4589999999876644
No 124
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=91.09 E-value=0.21 Score=39.24 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=54.0
Q ss_pred HHHhcCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhc----cCCCceEEecCCCCc---ccCcc--ceeee
Q 042599 126 NALLEGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSM----HNHTVVEHVSGHMFI---EVPNG--QALFM 187 (214)
Q Consensus 126 ~~~~~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~----~~~~rv~~~~gDff~---~~P~~--d~y~l 187 (214)
+.+......++|||. |..+..+++..|.- +.+++.+. ....+++++.+|..+ ++|.+ |++++
T Consensus 55 ~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 55 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp HHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred HhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 333333456999996 55555666666642 45555543 234578888888653 45543 66654
Q ss_pred eh---hccCCChHHHHHHHHHhHHhcCCC
Q 042599 188 KW---ILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~---ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
-- ..+.+.-.+-..+++.+++.|+||
T Consensus 135 D~~~~~~~~~~~~~~~~~~~e~~rvLkPG 163 (236)
T 3orh_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred eeeecccchhhhcchhhhhhhhhheeCCC
Confidence 22 223334445678899999999997
No 125
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=91.01 E-value=0.17 Score=39.51 Aligned_cols=78 Identities=8% Similarity=0.108 Sum_probs=52.4
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccC---c--cceeeeeh
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---N--GQALFMKW 189 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---~--~d~y~l~~ 189 (214)
....++|+|. |..+..+++..|.. +..++.+.. ..++|+++.+|+.+..| . -|++++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~- 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID- 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE-
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc-
Confidence 3457899996 66666677765642 233333321 13589999999987554 2 3888754
Q ss_pred hccCCChHHHHHHHHHhHHhcCCC
Q 042599 190 ILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.+.+....+|+++.+.|+||
T Consensus 150 ----~~~~~~~~~l~~~~~~Lkpg 169 (232)
T 3ntv_A 150 ----AAKAQSKKFFEIYTPLLKHQ 169 (232)
T ss_dssp ----TTSSSHHHHHHHHGGGEEEE
T ss_pred ----CcHHHHHHHHHHHHHhcCCC
Confidence 34455677999999999886
No 126
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=90.89 E-value=0.35 Score=38.23 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=53.1
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC---c---cceeee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---N---GQALFM 187 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---~---~d~y~l 187 (214)
....++|+|. |..+..+++..| .. +..++.+.. ..++|+++.+|..+.+| . -|++++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 3467899996 666777788776 32 233333221 23589999999876332 2 388876
Q ss_pred ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 188 KWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
|.+.......|+++.+.|+||
T Consensus 143 -----d~~~~~~~~~l~~~~~~LkpG 163 (248)
T 3tfw_A 143 -----DADKPNNPHYLRWALRYSRPG 163 (248)
T ss_dssp -----CSCGGGHHHHHHHHHHTCCTT
T ss_pred -----CCchHHHHHHHHHHHHhcCCC
Confidence 345666778999999999997
No 127
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=90.48 E-value=0.1 Score=38.69 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=51.1
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----C-CCceEEecCCCCcccCc---cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN---GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~---~d~y~l~~ILHdw 194 (214)
...++|+|. |..+..+++....+ +..++.+.. . .++++++.+|+.+++|. -|++++..++|++
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 113 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL 113 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCchHHH
Confidence 356899996 55555555554221 223332221 1 26899999999876553 4999988877654
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
..+|+++.+.|+||
T Consensus 114 -----~~~l~~~~~~l~~g 127 (192)
T 1l3i_A 114 -----QEILRIIKDKLKPG 127 (192)
T ss_dssp -----HHHHHHHHHTEEEE
T ss_pred -----HHHHHHHHHhcCCC
Confidence 78899999999886
No 128
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=90.14 E-value=0.14 Score=41.50 Aligned_cols=82 Identities=6% Similarity=-0.051 Sum_probs=50.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc--C-c-cceeeee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV--P-N-GQALFMK 188 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~--P-~-~d~y~l~ 188 (214)
...++|+|+ |..+.++++..|.. +.+++.+.. ..+|++++.+|.++-+ + + -|++++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 346899997 55556666654532 344443321 2479999999988643 2 2 3998885
Q ss_pred hhccCCChHH--HHHHHHHhHHhcCCC
Q 042599 189 WILSDWDDEE--CLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~~--~~~IL~~~~~Al~pg 213 (214)
-..|..+.+. ...+++++++.|+||
T Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~L~pg 182 (275)
T 1iy9_A 156 STEPVGPAVNLFTKGFYAGIAKALKED 182 (275)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 4333332211 367889999999876
No 129
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=89.89 E-value=0.2 Score=39.30 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=49.5
Q ss_pred CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc------CCCceEEecCCCCcc-cCc--cceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH------NHTVVEHVSGHMFIE-VPN--GQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~-~P~--~d~y~l~~ILH 192 (214)
..++|+|. |..+..+++. .|.. +..++.+.. ..++++++.+|+.+. +|. .|++++
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~----- 172 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL----- 172 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE-----
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE-----
Confidence 56899996 5555666666 4532 233333321 146899999999975 664 498887
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
|+++. ..+|+++.+.|+||
T Consensus 173 ~~~~~--~~~l~~~~~~L~~g 191 (258)
T 2pwy_A 173 DLMEP--WKVLEKAALALKPD 191 (258)
T ss_dssp ESSCG--GGGHHHHHHHEEEE
T ss_pred CCcCH--HHHHHHHHHhCCCC
Confidence 45543 37899999999886
No 130
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=89.87 E-value=0.28 Score=35.60 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=53.9
Q ss_pred CceEEccC--CccHHHHHHhC-CCchH-H--HHhhccCCCceEEecCCCCcc---------cCc--cceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-ARMNN-L--FNQSMHNHTVVEHVSGHMFIE---------VPN--GQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-P~l~~-v--~~~~~~~~~rv~~~~gDff~~---------~P~--~d~y~l~~ILHdw~ 195 (214)
..++|+|. |..+..+++.. |...- . ++. +....+++++.+|+.+. +|. -|+++....+|..+
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCS
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccC
Confidence 46899996 55556666663 43211 0 112 33347899999999863 563 39999988887655
Q ss_pred hH---H------HHHHHHHhHHhcCCC
Q 042599 196 DE---E------CLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~---~------~~~IL~~~~~Al~pg 213 (214)
+. . ...+|+++.+.|+||
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~~L~~g 129 (180)
T 1ej0_A 103 TPAVDIPRAMYLVELALEMCRDVLAPG 129 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHcCCC
Confidence 43 1 268899999999886
No 131
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=89.82 E-value=0.42 Score=36.66 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=52.5
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhc------cCCCceEEecCCCCcccCc--------ccee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSM------HNHTVVEHVSGHMFIEVPN--------GQAL 185 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~------~~~~rv~~~~gDff~~~P~--------~d~y 185 (214)
....++|+|. |..+..+++..| .. +..++.+. ...++|+++.+|..+.+|. -|++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 3457899996 666777788776 22 22333222 1235799999999864331 2777
Q ss_pred eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 186 FMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++. .+.+....+|+++.+.|+||
T Consensus 138 ~~d-----~~~~~~~~~l~~~~~~L~pg 160 (223)
T 3duw_A 138 FID-----ADKQNNPAYFEWALKLSRPG 160 (223)
T ss_dssp EEC-----SCGGGHHHHHHHHHHTCCTT
T ss_pred EEc-----CCcHHHHHHHHHHHHhcCCC
Confidence 654 44556678999999999997
No 132
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=89.61 E-value=0.088 Score=42.77 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=34.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
||+++|++...+.|+|+.|+..|+++++ + +++|++++....|
T Consensus 51 ia~~lgl~ksTv~RlL~tL~~~G~v~~~-----~----~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 51 LTRFLDLPKSSAHGLLAVMTELDLLARS-----A----DGTLRIGPHSLRW 92 (275)
T ss_dssp HHHHHTCC--CHHHHHHHHHHTTSEEEC-----T----TSEEEECTHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEC-----C----CCcEEehHHHHHH
Confidence 8999999999999999999999999986 2 4689998865443
No 133
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=89.58 E-value=0.75 Score=38.39 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=51.3
Q ss_pred CCceEEccC--CccHHHHHHhCCC-------chHHHHhhc------cCCCceEEecCCCCc-ccCc--cceeeeehhccC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-------MNNLFNQSM------HNHTVVEHVSGHMFI-EVPN--GQALFMKWILSD 193 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-------l~~v~~~~~------~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHd 193 (214)
...++|+|. |..+..++++ +. +...++.+. ...++|+++.+|+.+ ++|. -|+++...+.|.
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 357899997 5444455554 32 122333222 123579999999996 5673 499997665444
Q ss_pred C-ChHHHHHHHHHhHHhcCCC
Q 042599 194 W-DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w-~d~~~~~IL~~~~~Al~pg 213 (214)
. ..+....+|+.+.+.|+||
T Consensus 146 l~~~~~~~~~l~~~~r~Lkpg 166 (349)
T 3q7e_A 146 LFYESMLNTVLHARDKWLAPD 166 (349)
T ss_dssp BTBTCCHHHHHHHHHHHEEEE
T ss_pred ccCchhHHHHHHHHHHhCCCC
Confidence 3 2344557889999999886
No 134
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.57 E-value=0.12 Score=32.57 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=30.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLA 64 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t 64 (214)
||+.+|++...+.|+|..|...|++..+ . .+.|.++
T Consensus 31 LA~~lglsr~tv~~~l~~L~~~G~I~~~-----~----~G~y~lg 66 (67)
T 2heo_A 31 LVKKCQVPKKTLNQVLYRLKKEDRVSSP-----S----PKYWSIG 66 (67)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTSEEEE-----E----TTEEEEC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEecC-----C----CceEeeC
Confidence 9999999999999999999999998764 1 5677653
No 135
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=89.56 E-value=0.66 Score=35.40 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHH----hhc-----cCCCceEEecCCCCc-ccCcc-ceeeeehh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFN----QSM-----HNHTVVEHVSGHMFI-EVPNG-QALFMKWI 190 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~----~~~-----~~~~rv~~~~gDff~-~~P~~-d~y~l~~I 190 (214)
...++|+|. |..+..+++.+|.. +..++ .+. ...++++++.+|+.+ +.+.+ |.++ +
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~---~ 104 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH---V 104 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE---E
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE---E
Confidence 356899996 66677788887753 22222 121 124589999999986 44432 6666 2
Q ss_pred ccCCChHH------HHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEE------CLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~------~~~IL~~~~~Al~pg 213 (214)
+..|.... ...+|+++++.|+||
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 133 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPG 133 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCC
Confidence 23343331 168899999999986
No 136
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=89.41 E-value=0.29 Score=38.00 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=52.4
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccC-----c-cceeeeeh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP-----N-GQALFMKW 189 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P-----~-~d~y~l~~ 189 (214)
...++|+|. |..+..+++..|.. +..++.+.. ..++|+++.+|+.+.+| . -|++++..
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 357899996 66667777777642 233333321 12579999999987432 2 39988866
Q ss_pred hccCCChHHHHHHHHHhHHhcCCC
Q 042599 190 ILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
..+ ....+|+++.+.|+||
T Consensus 135 ~~~-----~~~~~l~~~~~~L~pg 153 (233)
T 2gpy_A 135 AKG-----QYRRFFDMYSPMVRPG 153 (233)
T ss_dssp GGS-----CHHHHHHHHGGGEEEE
T ss_pred CHH-----HHHHHHHHHHHHcCCC
Confidence 654 5578899999999886
No 137
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=89.31 E-value=0.19 Score=40.80 Aligned_cols=81 Identities=6% Similarity=-0.141 Sum_probs=52.1
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc---Cc-cceeeeeh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV---PN-GQALFMKW 189 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~---P~-~d~y~l~~ 189 (214)
..++|+|+ |..+.++++..|.. +.+++.+.. ..++++++.+|..+.+ +. -|++++..
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~ 159 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS 159 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC
T ss_pred CeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcC
Confidence 46899997 55566666655532 344444322 1478999999987633 33 39998854
Q ss_pred hccCCChHHH--HHHHHHhHHhcCCC
Q 042599 190 ILSDWDDEEC--LKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~d~~~--~~IL~~~~~Al~pg 213 (214)
..|.-+.+.. ..+++++++.|+||
T Consensus 160 ~~~~~~~~~l~~~~~l~~~~~~L~pg 185 (283)
T 2i7c_A 160 SDPIGPAETLFNQNFYEKIYNALKPN 185 (283)
T ss_dssp CCTTTGGGGGSSHHHHHHHHHHEEEE
T ss_pred CCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 4332223222 68999999999886
No 138
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=89.12 E-value=0.65 Score=35.97 Aligned_cols=77 Identities=10% Similarity=0.011 Sum_probs=49.7
Q ss_pred CCceEEccC--CccHHHHHHhC-CC-------c-hH----HHHhhccCCCceEEecCCCCcc--cC--c--cceeeeehh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKD-AR-------M-NN----LFNQSMHNHTVVEHVSGHMFIE--VP--N--GQALFMKWI 190 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~-P~-------l-~~----v~~~~~~~~~rv~~~~gDff~~--~P--~--~d~y~l~~I 190 (214)
...++|+|. |..+..+++.. |. + +. ..+.+... .+++++.+|+.++ +| . -|++++...
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 356899996 55555666654 42 1 11 22323222 7899999999873 33 2 388887322
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
..+....+++++.+.|+||
T Consensus 157 ----~~~~~~~~~~~~~~~Lkpg 175 (233)
T 2ipx_A 157 ----QPDQTRIVALNAHTFLRNG 175 (233)
T ss_dssp ----CTTHHHHHHHHHHHHEEEE
T ss_pred ----CccHHHHHHHHHHHHcCCC
Confidence 4556677899999999986
No 139
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=89.10 E-value=0.13 Score=34.51 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=34.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY 69 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~ 69 (214)
||+.+|++...+.|.|+.|...|++.+. .+.|.+|+.++.
T Consensus 49 La~~l~is~~tv~~~L~~L~~~Glv~~~----------~g~y~l~~~g~~ 88 (96)
T 1y0u_A 49 IMQTLSLSKKQLDYHLKVLEAGFCIERV----------GERWVVTDAGKI 88 (96)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECTTTCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE----------CCEEEECCCchH
Confidence 8889999999999999999999999986 258888887553
No 140
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=89.09 E-value=0.79 Score=37.85 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=49.7
Q ss_pred CCceEEccC--CccHHHHHHhCC-C-----chHHHHhhcc------CCCceEEecCCCCc-ccC-c-cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-R-----MNNLFNQSMH------NHTVVEHVSGHMFI-EVP-N-GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~-----l~~v~~~~~~------~~~rv~~~~gDff~-~~P-~-~d~y~l~~ILHdw 194 (214)
...++|+|. |..+..+++... . ....++.+.. ..++|+++.+|+.+ +.| . .|+++...+.|..
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l 118 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 118 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhc
Confidence 357899997 444444444321 1 1122322221 23579999999986 466 3 4999977554443
Q ss_pred C-hHHHHHHHHHhHHhcCCC
Q 042599 195 D-DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~-d~~~~~IL~~~~~Al~pg 213 (214)
. .+....+|+.+.+.|+||
T Consensus 119 ~~~~~~~~~l~~~~~~Lkpg 138 (328)
T 1g6q_1 119 LYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp STTCCHHHHHHHHHHHEEEE
T ss_pred ccHHHHHHHHHHHHhhcCCC
Confidence 2 233457889999999886
No 141
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=88.90 E-value=0.99 Score=33.73 Aligned_cols=82 Identities=12% Similarity=-0.013 Sum_probs=51.9
Q ss_pred CCceEEccC--CccHHHHHHhC-CCc--------hHHHHhhccC------CCceEEecCCCCcc--cC-c-cceeeeehh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMHN------HTVVEHVSGHMFIE--VP-N-GQALFMKWI 190 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~~------~~rv~~~~gDff~~--~P-~-~d~y~l~~I 190 (214)
...++|+|. |..+..+++.. |.. +..++.+... .++++++.+|+.+. .+ . -|++++...
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 357899996 55555666653 431 2333333221 36899999998752 33 3 388887754
Q ss_pred cc-------CCChHHHHHHHHHhHHhcCCC
Q 042599 191 LS-------DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LH-------dw~d~~~~~IL~~~~~Al~pg 213 (214)
+. ....++..++|+++.+.|+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 132 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTG 132 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEE
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCC
Confidence 41 223446677999999999886
No 142
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=88.85 E-value=0.97 Score=37.18 Aligned_cols=76 Identities=12% Similarity=0.042 Sum_probs=49.6
Q ss_pred CCceEEccCCc--cHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599 132 SVPHTKAQSGM--DAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgGG~--~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw 194 (214)
...++|+|.|. ....++.+.|.. +..++.+.. ..++|+++.+|..+ +|. -|++++...
T Consensus 123 g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~---- 197 (298)
T 3fpf_A 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL---- 197 (298)
T ss_dssp TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT----
T ss_pred cCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC----
Confidence 35689999643 222333444432 334444332 12789999999987 453 399988654
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
-++-.++++++++.|+||
T Consensus 198 -~~d~~~~l~el~r~LkPG 215 (298)
T 3fpf_A 198 -AEPKRRVFRNIHRYVDTE 215 (298)
T ss_dssp -CSCHHHHHHHHHHHCCTT
T ss_pred -ccCHHHHHHHHHHHcCCC
Confidence 245568999999999998
No 143
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=88.82 E-value=0.49 Score=37.70 Aligned_cols=81 Identities=10% Similarity=0.119 Sum_probs=49.5
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---C------CCceEEecCCCCcc--------cCc--cc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---N------HTVVEHVSGHMFIE--------VPN--GQ 183 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---~------~~rv~~~~gDff~~--------~P~--~d 183 (214)
..++|+|. |.....++++.|.. +..++.+.. . .++|+++.+|+.+. +|. -|
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD 117 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFH 117 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEE
T ss_pred CEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcC
Confidence 46899996 55566777887753 233333321 1 23799999999864 343 38
Q ss_pred eeeee----------------hhccCCChHHHHHHHHHhHHhcCCC
Q 042599 184 ALFMK----------------WILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~----------------~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+++.. .+-+.........+|+.+.+.|+||
T Consensus 118 ~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 163 (260)
T 2ozv_A 118 HVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG 163 (260)
T ss_dssp EEEECCCC---------------------CCHHHHHHHHHHHEEEE
T ss_pred EEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence 88874 2222233344678899999999875
No 144
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=88.67 E-value=0.29 Score=39.25 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=49.6
Q ss_pred CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc-----C-CCceEEecCCCCcccCc--cceeeeehhccC
Q 042599 133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN--GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~--~d~y~l~~ILHd 193 (214)
..++|+|. |..+..+++. .|.. +..++.+.. . .++++++.+|+.+.+|. .|++++ |
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~-----~ 188 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL-----D 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE-----C
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEE-----C
Confidence 46899996 5556667776 5532 233333322 1 25899999999987774 488887 4
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
+++. ..+|+++.+.|+||
T Consensus 189 ~~~~--~~~l~~~~~~L~pg 206 (277)
T 1o54_A 189 VPDP--WNYIDKCWEALKGG 206 (277)
T ss_dssp CSCG--GGTHHHHHHHEEEE
T ss_pred CcCH--HHHHHHHHHHcCCC
Confidence 4433 47889999999876
No 145
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=88.46 E-value=0.28 Score=40.12 Aligned_cols=80 Identities=9% Similarity=-0.052 Sum_probs=47.9
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCcccC---c-cceeeeeh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEVP---N-GQALFMKW 189 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~P---~-~d~y~l~~ 189 (214)
..++|+|+ |..+.++++..|.. +.+++.+.. ..++++++.+|.++.++ . -|++++.-
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~ 171 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS 171 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcC
Confidence 56899997 55556666654532 334433321 14789999999876432 2 38888642
Q ss_pred hccCCC-hH---HHHHHHHHhHHhcCCC
Q 042599 190 ILSDWD-DE---ECLKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~-d~---~~~~IL~~~~~Al~pg 213 (214)
.-+ |. .. ....+++++++.|+||
T Consensus 172 ~~~-~~~~~~~l~~~~~l~~~~~~Lkpg 198 (296)
T 1inl_A 172 TDP-TAGQGGHLFTEEFYQACYDALKED 198 (296)
T ss_dssp -----------CCSHHHHHHHHHHEEEE
T ss_pred CCc-ccCchhhhhHHHHHHHHHHhcCCC
Confidence 211 11 00 2368999999999886
No 146
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=88.40 E-value=0.18 Score=41.80 Aligned_cols=81 Identities=6% Similarity=-0.077 Sum_probs=47.9
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc--Cc--cceeeee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV--PN--GQALFMK 188 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~--P~--~d~y~l~ 188 (214)
...++|+|+ |..+.++++..|.. +.+++.+.. ..+||+++.+|.++.+ +. -|++++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 356899997 55566666665532 344444321 1468999999998633 22 3998874
Q ss_pred hhccCCChHHH---HHHHHHhHHhcCCC
Q 042599 189 WILSDWDDEEC---LKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~~~---~~IL~~~~~Al~pg 213 (214)
..-| +..... ..+++++++.|+||
T Consensus 189 ~~~~-~~~~~~l~t~~~l~~~~~~Lkpg 215 (314)
T 2b2c_A 189 SSDP-VGPAESLFGQSYYELLRDALKED 215 (314)
T ss_dssp CC--------------HHHHHHHHEEEE
T ss_pred CCCC-CCcchhhhHHHHHHHHHhhcCCC
Confidence 4322 322222 78999999999886
No 147
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=88.28 E-value=0.39 Score=37.75 Aligned_cols=44 Identities=7% Similarity=0.174 Sum_probs=34.5
Q ss_pred EecCCCCccc------Cc--cceeeeehhcc---CCC----hHHHHHHHHHhHHhcCCC
Q 042599 170 HVSGHMFIEV------PN--GQALFMKWILS---DWD----DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 170 ~~~gDff~~~------P~--~d~y~l~~ILH---dw~----d~~~~~IL~~~~~Al~pg 213 (214)
++.+|++++. +. -|+++....++ +|. .+...++|+++.+.|+||
T Consensus 149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 9999999865 42 39998875544 344 488899999999999997
No 148
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=88.26 E-value=0.45 Score=38.48 Aligned_cols=81 Identities=7% Similarity=-0.082 Sum_probs=50.0
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------------CCCceEEecCCCCccc--Cc-cc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------------NHTVVEHVSGHMFIEV--PN-GQ 183 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------------~~~rv~~~~gDff~~~--P~-~d 183 (214)
...++|+|+ |..+.++++. |.. +.+++.+.. ..++++++.+|.++-+ +. -|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD 154 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 154 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCee
Confidence 356899997 5555666666 642 334433221 2478999999986532 33 39
Q ss_pred eeeeehhccCCChHH--HHHHHHHhHHhcCCC
Q 042599 184 ALFMKWILSDWDDEE--CLKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~~ILHdw~d~~--~~~IL~~~~~Al~pg 213 (214)
++++....|..+.+. ...+++++++.|+||
T Consensus 155 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg 186 (281)
T 1mjf_A 155 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNP 186 (281)
T ss_dssp EEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 988765443322222 378899999999886
No 149
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=88.20 E-value=0.1 Score=41.96 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=36.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
||+++|++...+.|+|+.|+..|++++++. .++|++++....|
T Consensus 27 ia~~lgl~ksT~~RlL~tL~~~G~v~~~~~--------~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 27 LTRLSGMNKATVYRLMSELQEAGFVEQVEG--------ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTSEEECSS--------SSEEEECTTHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEcCC--------CCcEEcCHHHHHH
Confidence 889999999999999999999999998721 4789998765443
No 150
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=88.13 E-value=0.2 Score=39.79 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=36.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
||+.+|++...+.|+|+.|...|++++++. .++|++++....|
T Consensus 27 la~~~gl~~stv~r~l~~L~~~G~v~~~~~--------~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 27 IAQLVGLPRSTVQRIINALEEEFLVEALGP--------AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHTTSCHHHHHHHHHHHHTTTSEEECGG--------GCEEEECSHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEeCC--------CCeEEECHHHHHH
Confidence 899999999999999999999999998621 4789998865444
No 151
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=87.90 E-value=0.7 Score=34.79 Aligned_cols=77 Identities=9% Similarity=0.018 Sum_probs=47.1
Q ss_pred CceEEccC--CccHHHHHHhCCC-c------hHHHHhhccCCCceEEecCCCCcccCc-cceeeeehhccCCChHHHHHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMHNHTVVEHVSGHMFIEVPN-GQALFMKWILSDWDDEECLKI 202 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d~~~~~I 202 (214)
..++|+|. |..+..+...... + +..++.+.....+++++.+|+++ +|. -|++++.-.+|.+++....++
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~~~~~ 131 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHSDRAF 131 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------CHHH
T ss_pred CEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCchhHHH
Confidence 46899996 5444555554221 2 33444444333389999999987 464 499999999999987666778
Q ss_pred HHHhHHhc
Q 042599 203 LKNCCVQC 210 (214)
Q Consensus 203 L~~~~~Al 210 (214)
|+.+.+.+
T Consensus 132 l~~~~~~~ 139 (200)
T 1ne2_A 132 IDKAFETS 139 (200)
T ss_dssp HHHHHHHE
T ss_pred HHHHHHhc
Confidence 88887765
No 152
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=87.81 E-value=1.1 Score=34.15 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=47.6
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCC-ceEEecCCCCcccC---ccceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHT-VVEHVSGHMFIEVP---NGQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~-rv~~~~gDff~~~P---~~d~y~l~~ILHdw~ 195 (214)
..++|+|. |..+..+++..-.+ +..++.+.. ..+ +|+++.+|+.+.++ +-|++++...+
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~---- 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG---- 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC----
T ss_pred CEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc----
Confidence 56899996 55555666652221 233333221 123 89999999998544 34998876544
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
+ .. +|+++.+.|+||
T Consensus 133 ~--~~-~l~~~~~~Lkpg 147 (204)
T 3njr_A 133 S--QA-LYDRLWEWLAPG 147 (204)
T ss_dssp C--HH-HHHHHHHHSCTT
T ss_pred c--HH-HHHHHHHhcCCC
Confidence 1 22 899999999997
No 153
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=87.80 E-value=0.068 Score=41.84 Aligned_cols=81 Identities=10% Similarity=0.035 Sum_probs=51.5
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----C-CCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPN--GQALFMKWILSDW 194 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw 194 (214)
....++|+|. |..+..+++..-.+ +..++.+.. . .++++++.+|+.+..|. -|++++...+|..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP 157 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence 3467999996 55556666654322 233333321 1 15899999999875453 3999999888876
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
++... .+.++++.|+||
T Consensus 158 ~~~~~--~~~~~~~~L~pg 174 (241)
T 3gdh_A 158 DYATA--ETFDIRTMMSPD 174 (241)
T ss_dssp GGGGS--SSBCTTTSCSSC
T ss_pred chhhh--HHHHHHhhcCCc
Confidence 65542 455666666665
No 154
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=87.79 E-value=0.72 Score=34.92 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=48.2
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCcccC-c--cceeeeehhccCCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-N--GQALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHdw~ 195 (214)
...++|+|. |..+..+++....+ +..++.+.. ..++++++.+|.++..+ . -|++++...+|..+
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 157 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIP 157 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSSCC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhhhh
Confidence 356899996 55555666553322 233333321 23579999999997544 2 39999999999988
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
+ ++.+.|+||
T Consensus 158 ~--------~~~~~L~pg 167 (210)
T 3lbf_A 158 T--------ALMTQLDEG 167 (210)
T ss_dssp T--------HHHHTEEEE
T ss_pred H--------HHHHhcccC
Confidence 6 355566654
No 155
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=87.74 E-value=0.42 Score=36.83 Aligned_cols=73 Identities=8% Similarity=-0.012 Sum_probs=46.8
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---CCCceEEecCCCCcccC-c--cceeeeehhccCCChHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---NHTVVEHVSGHMFIEVP-N--GQALFMKWILSDWDDEE 198 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHdw~d~~ 198 (214)
..++|+|. |..+..+++...++ +..++.+.. ...+++++.+|+.+..| . -|+++...++|..++
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~-- 149 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC-- 149 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCH--
T ss_pred CEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHHHHH--
Confidence 56899996 55555566554322 233333322 12289999999987554 2 399999999998875
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
++.+.|+||
T Consensus 150 ------~~~~~L~pg 158 (231)
T 1vbf_A 150 ------KPYEQLKEG 158 (231)
T ss_dssp ------HHHHTEEEE
T ss_pred ------HHHHHcCCC
Confidence 355566654
No 156
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=87.71 E-value=1.2 Score=37.85 Aligned_cols=81 Identities=6% Similarity=-0.079 Sum_probs=57.0
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc----CCCceEEecCCCCcccCc---cceeeeehhccC---C
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH----NHTVVEHVSGHMFIEVPN---GQALFMKWILSD---W 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~----~~~rv~~~~gDff~~~P~---~d~y~l~~ILHd---w 194 (214)
..++|+|. |..+..+++...++ +..++.+.. ..-.++++.+|+++..+. -|++++.-.+|. -
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~ 314 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAV 314 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSS
T ss_pred CEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcccc
Confidence 46899996 66677777664432 223333321 222489999999975442 399999888886 4
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
..+....+|+++.+.|+||
T Consensus 315 ~~~~~~~~l~~~~~~LkpG 333 (381)
T 3dmg_A 315 ILDVAQAFVNVAAARLRPG 333 (381)
T ss_dssp CCHHHHHHHHHHHHHEEEE
T ss_pred cHHHHHHHHHHHHHhcCcC
Confidence 4678889999999999886
No 157
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=87.64 E-value=0.38 Score=32.19 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=36.3
Q ss_pred CCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 21 PKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 21 A~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
|+.++++...+.|+++.|...|++++.... ....|.+|+.++.+.
T Consensus 33 a~~l~is~~tvs~~l~~Le~~gli~r~~~~------r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 33 NAEFPMSTATFYDAKKFLIQEGFVKERQER------GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEECHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHCCCEEEEecC------CceEEEECHHHHHHH
Confidence 999999999999999999999999875310 145677888777665
No 158
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=87.57 E-value=0.39 Score=39.54 Aligned_cols=82 Identities=6% Similarity=-0.041 Sum_probs=52.7
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc----------CCCceEEecCCCCccc--Cc--cceeee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH----------NHTVVEHVSGHMFIEV--PN--GQALFM 187 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~----------~~~rv~~~~gDff~~~--P~--~d~y~l 187 (214)
...++|+|+ |..+.++++..|.. +.+++.+.. ..++++++.+|.++.+ +. -|++++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 356899997 55566666655532 334443321 1478999999998633 22 399998
Q ss_pred ehhccCC--C-hHH--HHHHHHHhHHhcCCC
Q 042599 188 KWILSDW--D-DEE--CLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~ILHdw--~-d~~--~~~IL~~~~~Al~pg 213 (214)
....|.+ . .+. ...+++++++.|+||
T Consensus 158 d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg 188 (314)
T 1uir_A 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPG 188 (314)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred CCCCcccccCcchhccHHHHHHHHHHhcCCC
Confidence 7655441 1 111 478899999999886
No 159
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=87.57 E-value=0.29 Score=40.60 Aligned_cols=80 Identities=8% Similarity=-0.090 Sum_probs=50.5
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---C------CCceEEecCCCCccc---Cc-cceeeeeh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---N------HTVVEHVSGHMFIEV---PN-GQALFMKW 189 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---~------~~rv~~~~gDff~~~---P~-~d~y~l~~ 189 (214)
..++|+|+ |..+.++++..|.. +.+++.+.. . .++++++.+|.++.+ +. -|+++...
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~ 197 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDS 197 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEEC
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECC
Confidence 46899997 55556666654532 344443321 1 468999999988643 22 39988753
Q ss_pred hccCCC-hHH--HHHHHHHhHHhcCCC
Q 042599 190 ILSDWD-DEE--CLKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~-d~~--~~~IL~~~~~Al~pg 213 (214)
. +.|. .+. ...+++++++.|+||
T Consensus 198 ~-~p~~~~~~l~~~~~l~~~~~~Lkpg 223 (321)
T 2pt6_A 198 S-DPIGPAETLFNQNFYEKIYNALKPN 223 (321)
T ss_dssp C-CSSSGGGGGSSHHHHHHHHHHEEEE
T ss_pred c-CCCCcchhhhHHHHHHHHHHhcCCC
Confidence 2 2232 222 278999999999886
No 160
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=87.56 E-value=1.1 Score=35.75 Aligned_cols=77 Identities=8% Similarity=0.013 Sum_probs=51.5
Q ss_pred CceEEccCCc--cHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehhccC
Q 042599 133 VPHTKAQSGM--DAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgGG~--~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~ILHd 193 (214)
..++|+|.|+ .+..+++..|.. +..++.+.. ..++|++..+|.++.++. .|++++..+
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm--- 99 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM--- 99 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE---
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC---
Confidence 5799999644 455566666642 233433332 246899999999987663 488887644
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
.-+-...||....+.++++
T Consensus 100 -Gg~lI~~IL~~~~~~L~~~ 118 (244)
T 3gnl_A 100 -GGTLIRTILEEGAAKLAGV 118 (244)
T ss_dssp -CHHHHHHHHHHTGGGGTTC
T ss_pred -chHHHHHHHHHHHHHhCCC
Confidence 3466778888888777654
No 161
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=87.55 E-value=0.76 Score=35.67 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=48.5
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc-----CCCceEEecCCCCcccCc-c--ceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN-G--QALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P~-~--d~y~l~~ILHdw 194 (214)
...++|+|+ |..+..+++..| .+ +..++.+.. ..++++++.+|+..++|. + |++++..++|.+
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~ 171 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI 171 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC
T ss_pred CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcHHHH
Confidence 356899996 555666666654 21 233333322 234699999999766663 3 999999999988
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
++ ++.+.|+||
T Consensus 172 ~~--------~~~~~L~pg 182 (235)
T 1jg1_A 172 PE--------PLIEQLKIG 182 (235)
T ss_dssp CH--------HHHHTEEEE
T ss_pred HH--------HHHHhcCCC
Confidence 75 445566654
No 162
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=87.45 E-value=0.17 Score=36.94 Aligned_cols=80 Identities=14% Similarity=-0.005 Sum_probs=48.4
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhccC----CCceEEecCCCCcccC-------ccceeeeehhcc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHN----HTVVEHVSGHMFIEVP-------NGQALFMKWILS 192 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~----~~rv~~~~gDff~~~P-------~~d~y~l~~ILH 192 (214)
...++|+|. |..+..+++..+.+ +..++.+... .-+++++.+|+.+..| +-|++++...+|
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 356899996 66666777776643 2333333221 1179999999986433 249999987777
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
-..++..+.+.+ .+.|+||
T Consensus 122 -~~~~~~~~~~~~-~~~L~~g 140 (171)
T 1ws6_A 122 -MDLAALFGELLA-SGLVEAG 140 (171)
T ss_dssp -SCTTHHHHHHHH-HTCEEEE
T ss_pred -hhHHHHHHHHHh-hcccCCC
Confidence 333333333333 4777765
No 163
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=87.44 E-value=0.55 Score=39.90 Aligned_cols=76 Identities=8% Similarity=0.059 Sum_probs=50.1
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhccCCCceEEecCCCCc-----ccC--c--cceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMHNHTVVEHVSGHMFI-----EVP--N--GQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~~~~rv~~~~gDff~-----~~P--~--~d~y~l~~ILHdw~ 195 (214)
..++|+|. |..+..+.++..+. +..++.+... .+.... ++|. .+| . -|+++..++||.++
T Consensus 109 ~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~--~~~~~~-~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~ 185 (416)
T 4e2x_A 109 PFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK--GIRVRT-DFFEKATADDVRRTEGPANVIYAANTLCHIP 185 (416)
T ss_dssp CEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT--TCCEEC-SCCSHHHHHHHHHHHCCEEEEEEESCGGGCT
T ss_pred CEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc--CCCcce-eeechhhHhhcccCCCCEEEEEECChHHhcC
Confidence 46899996 77777777664432 2344444432 233322 2331 223 2 49999999999998
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
| -..+|+++++.|+||
T Consensus 186 d--~~~~l~~~~r~Lkpg 201 (416)
T 4e2x_A 186 Y--VQSVLEGVDALLAPD 201 (416)
T ss_dssp T--HHHHHHHHHHHEEEE
T ss_pred C--HHHHHHHHHHHcCCC
Confidence 4 678999999999986
No 164
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=87.24 E-value=0.33 Score=32.28 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599 6 TMKTAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY 69 (214)
Q Consensus 6 ~L~~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~ 69 (214)
++..-.++.|+..| ||+.+|++...+.|.|+.|...|+++..... .++ ....|.+|+.+..
T Consensus 12 ~l~~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~--~~~-r~~~~~lt~~g~~ 82 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI--ADR-PRTVVEITDFGME 82 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC--SSS-CEEEEEECHHHHH
T ss_pred ccCChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC--CCc-ceEEEEECHHHHH
Confidence 44555666677666 8999999999999999999999999864210 011 1345777776643
No 165
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=87.17 E-value=0.23 Score=36.78 Aligned_cols=45 Identities=7% Similarity=-0.103 Sum_probs=36.8
Q ss_pred ceEEecCCCCc-cc---Cc--cceeeeehhccCC-ChHHHHHHHHHhHHhcCCC
Q 042599 167 VVEHVSGHMFI-EV---PN--GQALFMKWILSDW-DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 167 rv~~~~gDff~-~~---P~--~d~y~l~~ILHdw-~d~~~~~IL~~~~~Al~pg 213 (214)
+++++.+|+.+ +. |. -|+++...+||.. +|. .++|+++++.|+||
T Consensus 43 ~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~~~r~Lkpg 94 (176)
T 2ld4_A 43 EGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAEIARILRPG 94 (176)
T ss_dssp TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHHHHHHEEEE
T ss_pred CcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHHHHHHCCCC
Confidence 48999999875 33 53 3999999999988 554 78999999999987
No 166
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=86.75 E-value=0.29 Score=39.85 Aligned_cols=81 Identities=6% Similarity=0.006 Sum_probs=57.4
Q ss_pred CCceEEccCCcc--HHHHHHhCCCc--------hH---HHHhhc-cCCCceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599 132 SVPHTKAQSGMD--AFAAAAKDARM--------NN---LFNQSM-HNHTVVEHVSGHMFIEVPN--GQALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgGG~~--~~~~~~~~P~l--------~~---v~~~~~-~~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~ 195 (214)
...++|+|.|.+ +..++...|.. +. +.+... ....+.++...|+..+.|+ +|+.++--++|.-.
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~Le 212 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCLE 212 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHhh
Confidence 456999997544 44455556653 12 222221 2245588999999976563 69999999999999
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
+++-..++ ++.++|.|+
T Consensus 213 ~q~kg~g~-~ll~aL~~~ 229 (281)
T 3lcv_B 213 TQQRGSGW-EVIDIVNSP 229 (281)
T ss_dssp HHSTTHHH-HHHHHSSCS
T ss_pred hhhhHHHH-HHHHHhCCC
Confidence 99888888 899999876
No 167
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=86.75 E-value=0.23 Score=37.90 Aligned_cols=78 Identities=13% Similarity=-0.010 Sum_probs=51.0
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehh
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWI 190 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~I 190 (214)
....++|+|. |..+..+++..| .. +..++.+.. ..++|+++.+|.++..|. -|++++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-- 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD-- 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE--
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc--
Confidence 3457899996 666667777766 21 223332221 135799999999875442 2666554
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.+.+....+|+++.+.|+||
T Consensus 134 ---~~~~~~~~~l~~~~~~Lkpg 153 (210)
T 3c3p_A 134 ---CDVFNGADVLERMNRCLAKN 153 (210)
T ss_dssp ---TTTSCHHHHHHHHGGGEEEE
T ss_pred ---CChhhhHHHHHHHHHhcCCC
Confidence 44556678999999999886
No 168
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=86.56 E-value=1.4 Score=34.72 Aligned_cols=78 Identities=6% Similarity=-0.075 Sum_probs=51.8
Q ss_pred CCceEEccCCcc--HHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccCc---cceeeeehhcc
Q 042599 132 SVPHTKAQSGMD--AFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVPN---GQALFMKWILS 192 (214)
Q Consensus 132 ~~~~~dvgGG~~--~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P~---~d~y~l~~ILH 192 (214)
...++|+|-|+. +..+++..|.- +..++.+.. ..++|++..||.++.++. .|++++..+.
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG- 100 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG- 100 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC-
T ss_pred CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc-
Confidence 357999997554 45556666642 233333322 246899999999987663 4998877553
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
-+-...||....+.++++
T Consensus 101 ---g~lI~~IL~~~~~~l~~~ 118 (230)
T 3lec_A 101 ---GRLIADILNNDIDKLQHV 118 (230)
T ss_dssp ---HHHHHHHHHHTGGGGTTC
T ss_pred ---hHHHHHHHHHHHHHhCcC
Confidence 466777888887777654
No 169
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=86.55 E-value=0.23 Score=37.93 Aligned_cols=44 Identities=9% Similarity=-0.058 Sum_probs=36.0
Q ss_pred ceEEecCCCCc-ccCc--cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 167 VVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 167 rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+++++.+|+.+ +.|. -|+++...+|| | ++...+|+++++.|+||
T Consensus 98 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~--~~~~~~l~~~~~~L~~g 144 (215)
T 2zfu_A 98 DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G--TNIRDFLEEANRVLKPG 144 (215)
T ss_dssp STTEEESCTTSCSCCTTCEEEEEEESCCC-S--SCHHHHHHHHHHHEEEE
T ss_pred CceEEEeccccCCCCCCCEeEEEEehhcc-c--cCHHHHHHHHHHhCCCC
Confidence 67888999986 4554 39999999999 5 45678999999999886
No 170
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=86.33 E-value=0.59 Score=32.55 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=35.7
Q ss_pred HHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 5 MTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 5 ~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
.+|.--.++.|...| ||+.+|++...+.+-|+.|...|++...
T Consensus 13 ~al~~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~ 64 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp HHHTSHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344445566677777 9999999999999999999999999876
No 171
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=86.24 E-value=2 Score=32.85 Aligned_cols=76 Identities=7% Similarity=-0.073 Sum_probs=47.3
Q ss_pred CceEEccC--CccHHHHHHhCCC-------c-hH----HHHhhccCCCceEEecCCCCcc-----cCc-cceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR-------M-NN----LFNQSMHNHTVVEHVSGHMFIE-----VPN-GQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~-------l-~~----v~~~~~~~~~rv~~~~gDff~~-----~P~-~d~y~l~~ILH 192 (214)
..++|+|. |..+..+++..|. + +. ..+.+.. ..+++++.+|..++ .+. -|+++.. +.+
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-~~~ 136 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSGIVEKVDLIYQD-IAQ 136 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTTTCCCEEEEEEC-CCS
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchhhcccccceeEEEEe-ccC
Confidence 56899996 5555566665542 1 12 2222222 35788899998764 232 3888765 332
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
.++...+|+++++.|+||
T Consensus 137 ---~~~~~~~l~~~~r~Lkpg 154 (210)
T 1nt2_A 137 ---KNQIEILKANAEFFLKEK 154 (210)
T ss_dssp ---TTHHHHHHHHHHHHEEEE
T ss_pred ---hhHHHHHHHHHHHHhCCC
Confidence 244556699999999986
No 172
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=86.13 E-value=2.1 Score=32.69 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=47.2
Q ss_pred CceEEccC--CccHHHHHHhC-CCc--------hHHHHhh---ccCCCceEEecCCCCcc-----cCc-cceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQS---MHNHTVVEHVSGHMFIE-----VPN-GQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~---~~~~~rv~~~~gDff~~-----~P~-~d~y~l~~ILH 192 (214)
..++|+|. |..+..+++.. |.- +..++.+ ....++++++.+|+.++ .+. -|++++...
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~-- 152 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA-- 152 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC--
Confidence 46899996 66566666653 321 2222222 11236899999999873 222 388774322
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
..+....+|+++.+.|+||
T Consensus 153 --~~~~~~~~l~~~~~~Lkpg 171 (227)
T 1g8a_A 153 --QPTQAKILIDNAEVYLKRG 171 (227)
T ss_dssp --STTHHHHHHHHHHHHEEEE
T ss_pred --CHhHHHHHHHHHHHhcCCC
Confidence 3344455699999999986
No 173
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=86.13 E-value=0.29 Score=37.66 Aligned_cols=77 Identities=8% Similarity=-0.060 Sum_probs=51.0
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC--------c-ccee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP--------N-GQAL 185 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P--------~-~d~y 185 (214)
...++|+|. |..+..+++..| .. +..++.+.. ..++|+++.+|..+..| . -|++
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 357899996 666677777766 22 223332221 23579999999876433 2 2777
Q ss_pred eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 186 FMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++ |.+.+....+|+++.+.|+||
T Consensus 145 ~~-----~~~~~~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 145 YI-----DADKANTDLYYEESLKLLREG 167 (225)
T ss_dssp EE-----CSCGGGHHHHHHHHHHHEEEE
T ss_pred EE-----CCCHHHHHHHHHHHHHhcCCC
Confidence 74 334566778999999999886
No 174
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=86.11 E-value=0.17 Score=40.51 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=36.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+|++...+.|+|+.|+..|+++++ ++.|++++....|.
T Consensus 35 ia~~~gl~~stv~r~l~~L~~~G~v~~~----------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 35 LATEAGLSRPAVRRILLTLQKLGYVAGS----------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECGGGHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEeC----------CCEEEEcHHHHHHH
Confidence 8889999999999999999999999986 57899988765443
No 175
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=85.99 E-value=0.94 Score=36.64 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=48.1
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---C---CCceEEecCCCCc-ccCccceeeeehhccCCChH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---N---HTVVEHVSGHMFI-EVPNGQALFMKWILSDWDDE 197 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~---~~rv~~~~gDff~-~~P~~d~y~l~~ILHdw~d~ 197 (214)
..++|+|. |.....+++....+ +..++.+.. . .++++++.+|+.+ +.|.-|+++. +...+|+.+
T Consensus 30 ~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~-nlpy~~~~~ 108 (285)
T 1zq9_A 30 DVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVA-NLPYQISSP 108 (285)
T ss_dssp CEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEE-ECCGGGHHH
T ss_pred CEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEE-ecCcccchH
Confidence 56899996 77777777765533 223332221 1 2589999999986 5665576554 777788888
Q ss_pred HHHHHHHH
Q 042599 198 ECLKILKN 205 (214)
Q Consensus 198 ~~~~IL~~ 205 (214)
...++|.+
T Consensus 109 ~~~~~l~~ 116 (285)
T 1zq9_A 109 FVFKLLLH 116 (285)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 88888764
No 176
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=85.59 E-value=0.72 Score=35.46 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=50.8
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcc---cC-----c-cce
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIE---VP-----N-GQA 184 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~---~P-----~-~d~ 184 (214)
....++|+|. |..+..+++..| .. +..++.+.. ..++|+++.+|..+. .+ . -|+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 3457899996 666666666544 21 223333221 235799999998652 32 2 399
Q ss_pred eeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 185 LFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 185 y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+++....|.+. ...++++.+ +.|+||
T Consensus 138 V~~d~~~~~~~--~~~~~~~~~-~~Lkpg 163 (221)
T 3u81_A 138 VFLDHWKDRYL--PDTLLLEKC-GLLRKG 163 (221)
T ss_dssp EEECSCGGGHH--HHHHHHHHT-TCCCTT
T ss_pred EEEcCCcccch--HHHHHHHhc-cccCCC
Confidence 99887776663 344677777 888887
No 177
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=85.56 E-value=0.55 Score=35.72 Aligned_cols=73 Identities=11% Similarity=-0.006 Sum_probs=47.6
Q ss_pred CceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-----CCCceEEecCCCCcccC-c--cceeeeehhccC
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-N--GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHd 193 (214)
..++|+|. |..+..+++.. |.. +..++.+.. ..++++++.+|+.++.| . -|+++...++|.
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 158 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPK 158 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCchHH
Confidence 56899996 55566666654 321 233333321 23569999999987665 3 399999999998
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
.++ ++.+.|+||
T Consensus 159 ~~~--------~~~~~L~pg 170 (215)
T 2yxe_A 159 IPE--------PLIRQLKDG 170 (215)
T ss_dssp CCH--------HHHHTEEEE
T ss_pred HHH--------HHHHHcCCC
Confidence 874 555566654
No 178
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=85.53 E-value=2.1 Score=34.61 Aligned_cols=79 Identities=9% Similarity=0.049 Sum_probs=50.6
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCCCCcccC-cc---ceeeee---
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP-NG---QALFMK--- 188 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P-~~---d~y~l~--- 188 (214)
...++|+|. |..+..++.. |.. +..++.+.. ...+|+++.+|++++.+ +- |+++..
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy 202 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 202 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence 357999996 5555667777 643 233333221 13479999999998765 34 877763
Q ss_pred ---------hhccCCChHH-------HHHHHHHhH-HhcCCC
Q 042599 189 ---------WILSDWDDEE-------CLKILKNCC-VQCNTG 213 (214)
Q Consensus 189 ---------~ILHdw~d~~-------~~~IL~~~~-~Al~pg 213 (214)
.|+ |.... ...+++++. +.++||
T Consensus 203 i~~~~~l~~~v~--~ep~~al~~~~dgl~~~~~i~~~~l~pg 242 (284)
T 1nv8_A 203 VKSSAHLPKDVL--FEPPEALFGGEDGLDFYREFFGRYDTSG 242 (284)
T ss_dssp BCGGGSCTTSCC--CSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred CCcccccChhhc--cCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence 344 33332 347899999 888886
No 179
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=85.53 E-value=1.4 Score=34.68 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=49.7
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhccCCCceEEecCCCCc-ccCcc--ceeeeehhccCCChHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMHNHTVVEHVSGHMFI-EVPNG--QALFMKWILSDWDDEE 198 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~~~~rv~~~~gDff~-~~P~~--d~y~l~~ILHdw~d~~ 198 (214)
...++|+|. |..+..+++..|.. +..++.+.....+++++.+|+.+ +++.+ |+++...+.+
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~------ 159 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC------ 159 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC------
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh------
Confidence 356899995 77777788776532 33455554445678999999875 45543 9888755432
Q ss_pred HHHHHHHhHHhcCCC
Q 042599 199 CLKILKNCCVQCNTG 213 (214)
Q Consensus 199 ~~~IL~~~~~Al~pg 213 (214)
.|+++.+.|+||
T Consensus 160 ---~l~~~~~~L~pg 171 (269)
T 1p91_A 160 ---KAEELARVVKPG 171 (269)
T ss_dssp ---CHHHHHHHEEEE
T ss_pred ---hHHHHHHhcCCC
Confidence 478888888875
No 180
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=85.44 E-value=1.1 Score=33.20 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=48.4
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCc--ccC-c-cceeeee-hhccC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFI--EVP-N-GQALFMK-WILSD 193 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~--~~P-~-~d~y~l~-~ILHd 193 (214)
...++|+|. |..+..+++..-.+ +..++.+.. ..++++++.+|+.+ +.+ . -|++++. ..+|.
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~ 102 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPS 102 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC----
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCC
Confidence 356899996 55556666652222 233333321 22689999877654 233 3 3888765 33332
Q ss_pred ----C--ChHHHHHHHHHhHHhcCCC
Q 042599 194 ----W--DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 ----w--~d~~~~~IL~~~~~Al~pg 213 (214)
+ ..+....+|+++.+.|+||
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~Lkpg 128 (185)
T 3mti_A 103 ADKSVITKPHTTLEAIEKILDRLEVG 128 (185)
T ss_dssp -------CHHHHHHHHHHHHHHEEEE
T ss_pred cchhcccChhhHHHHHHHHHHhcCCC
Confidence 0 3467778899999999986
No 181
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=85.44 E-value=2.4 Score=34.87 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=60.7
Q ss_pred HhcCCCceEEccCCccHHHHHHhCCC--------chHHHHhhc---c-----CCCceEEecCCCCcccC----------c
Q 042599 128 LLEGSVPHTKAQSGMDAFAAAAKDAR--------MNNLFNQSM---H-----NHTVVEHVSGHMFIEVP----------N 181 (214)
Q Consensus 128 ~~~g~~~~~dvgGG~~~~~~~~~~P~--------l~~v~~~~~---~-----~~~rv~~~~gDff~~~P----------~ 181 (214)
+..|..++|++|.|.....+.-.+|+ +|.|+.... . ..++..+++.|+.+.+. .
T Consensus 99 ~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 99 VIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp HHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred HHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 34566789999987665544433453 255554321 1 35689999999986321 1
Q ss_pred -cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 182 -GQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 182 -~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.-++++--|||-.+++++..||+.+.+.++||
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~g 211 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVG 211 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCC
Confidence 14778889999999999999999999988887
No 182
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=85.39 E-value=0.56 Score=36.75 Aligned_cols=78 Identities=8% Similarity=0.095 Sum_probs=51.8
Q ss_pred CCCceEEccC--CccHHHHHHhCCC-c--------hHHHHhhcc------CCCceEEecCCCCcccC---------c-cc
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDAR-M--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---------N-GQ 183 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~-l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---------~-~d 183 (214)
+...++|+|+ |..+..+++..|. - +..++.+.. ..++|+++.+|.++.+| . -|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 3456899996 6667777877662 1 223332221 23589999999886322 2 28
Q ss_pred eeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 184 ALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++++. .+.+....+|+++.+.|+||
T Consensus 150 ~I~~d-----~~~~~~~~~l~~~~~~L~pG 174 (237)
T 3c3y_A 150 FGFVD-----ADKPNYIKYHERLMKLVKVG 174 (237)
T ss_dssp EEEEC-----SCGGGHHHHHHHHHHHEEEE
T ss_pred EEEEC-----CchHHHHHHHHHHHHhcCCC
Confidence 88764 44556788999999999886
No 183
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=85.35 E-value=0.27 Score=40.43 Aligned_cols=81 Identities=5% Similarity=-0.178 Sum_probs=48.6
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCccc--Cc--cceeeeeh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIEV--PN--GQALFMKW 189 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~~--P~--~d~y~l~~ 189 (214)
..++|+|+ |..+.++++..|.. +.+++.+.. ..++++++.+|.++-+ +. -|++++..
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~ 176 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDS 176 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEEC
T ss_pred CEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECC
Confidence 46899997 55666777665532 334433321 2578999999987632 22 39988754
Q ss_pred hccCCCh--HHHHHHHHHhHHhcCCC
Q 042599 190 ILSDWDD--EECLKILKNCCVQCNTG 213 (214)
Q Consensus 190 ILHdw~d--~~~~~IL~~~~~Al~pg 213 (214)
..|.-+. .....+++++++.|+||
T Consensus 177 ~~~~~~~~~l~~~~~l~~~~~~Lkpg 202 (304)
T 2o07_A 177 SDPMGPAESLFKESYYQLMKTALKED 202 (304)
T ss_dssp C-----------CHHHHHHHHHEEEE
T ss_pred CCCCCcchhhhHHHHHHHHHhccCCC
Confidence 3332221 12467899999999886
No 184
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=85.33 E-value=0.47 Score=39.57 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=50.7
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc---------CCCceEEecCCCCcc---cCc--cceeeee
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH---------NHTVVEHVSGHMFIE---VPN--GQALFMK 188 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~---------~~~rv~~~~gDff~~---~P~--~d~y~l~ 188 (214)
..++|+|+ |..+..+++..|.. +.+++.+.. ..++|+++.+|.++. .+. -|++++.
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d 201 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD 201 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC
T ss_pred CEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEEC
Confidence 46899997 55566666665532 334443321 246899999998753 343 3988874
Q ss_pred hhccCCChHH---HHHHHHHhHHhcCCC
Q 042599 189 WILSDWDDEE---CLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~~---~~~IL~~~~~Al~pg 213 (214)
.. +.+...+ ...+++++++.|+||
T Consensus 202 ~~-~p~~~~~~l~~~~~l~~~~~~Lkpg 228 (334)
T 1xj5_A 202 SS-DPIGPAKELFEKPFFQSVARALRPG 228 (334)
T ss_dssp CC-CTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred CC-CccCcchhhhHHHHHHHHHHhcCCC
Confidence 32 1222222 478999999999886
No 185
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=85.00 E-value=0.53 Score=35.59 Aligned_cols=76 Identities=9% Similarity=0.059 Sum_probs=49.7
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc-cceeeeehhccCCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN-GQALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~ 195 (214)
...++|+|. |..+..+.+ .|.. +..++.+.. ..+.++++.+|+++..++ -|+++....+|.
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-- 137 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-- 137 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred CCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH--
Confidence 357899996 544445444 4431 233333322 122499999999876554 499988766654
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
...+|+++.+.|+||
T Consensus 138 ---~~~~l~~~~~~L~~g 152 (205)
T 3grz_A 138 ---LLDLIPQLDSHLNED 152 (205)
T ss_dssp ---HHHHGGGSGGGEEEE
T ss_pred ---HHHHHHHHHHhcCCC
Confidence 578899999999876
No 186
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=84.97 E-value=0.34 Score=34.57 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=32.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY 69 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~ 69 (214)
||+.+|+++..+.|+++.|...|+++...... +.|.....|.++|+-.-
T Consensus 57 LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~-~~g~~~~~Ydl~pl~~k 105 (128)
T 2vn2_A 57 LAERMTVSAAECMEMVRRLLQKGMIAIEEHTD-EQGIRNEKYTLEPLWEK 105 (128)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHTTSSEECC-----------CEECHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC-CCCcEEEEEehHHHHHH
Confidence 99999999999999999999999998853211 11111235666665443
No 187
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=84.93 E-value=0.34 Score=37.37 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC--------c-ccee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP--------N-GQAL 185 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P--------~-~d~y 185 (214)
...++|+|. |..+..+++..| .. +..++.+.. ..++|+++.+|.++.+| . -|++
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 356899996 666667777655 21 222322221 13689999999876322 2 3888
Q ss_pred eeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 186 FMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 186 ~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++ |.+......+++++.+.|+||
T Consensus 150 ~~-----d~~~~~~~~~l~~~~~~L~pg 172 (229)
T 2avd_A 150 VV-----DADKENCSAYYERCLQLLRPG 172 (229)
T ss_dssp EE-----CSCSTTHHHHHHHHHHHEEEE
T ss_pred EE-----CCCHHHHHHHHHHHHHHcCCC
Confidence 77 444556678899999999886
No 188
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=84.92 E-value=0.2 Score=40.38 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=35.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
||+.+|++...+.|+|+.|+..|+++++ ++.|++++....|
T Consensus 42 ia~~~gl~~stv~r~l~tL~~~G~v~~~----------~~~Y~Lg~~~~~l 82 (265)
T 2ia2_A 42 VARATDLTRATARRFLLTLVELGYVATD----------GSAFWLTPRVLEL 82 (265)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEEES----------SSEEEECGGGGGT
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEec----------CCEEEEcHHHHHH
Confidence 8889999999999999999999999985 5789998865444
No 189
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=84.48 E-value=0.73 Score=38.33 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=50.2
Q ss_pred CCceEEccC--CccHHHHHHhCC-C-----chHHHHhhcc------CCCceEEecCCCCc-ccC-c-cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-R-----MNNLFNQSMH------NHTVVEHVSGHMFI-EVP-N-GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~-----l~~v~~~~~~------~~~rv~~~~gDff~-~~P-~-~d~y~l~~ILHdw 194 (214)
...++|+|. |..+..+++... . ....++.+.. ..++|+++.+|+.+ ++| . .|+++...+.+.+
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l 144 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 144 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTB
T ss_pred CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhc
Confidence 356899997 444444554421 1 1123333321 12689999999986 566 3 4999976533222
Q ss_pred -ChHHHHHHHHHhHHhcCCC
Q 042599 195 -DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 -~d~~~~~IL~~~~~Al~pg 213 (214)
..+....+|+.+.+.|+||
T Consensus 145 ~~~~~~~~~l~~~~~~Lkpg 164 (340)
T 2fyt_A 145 LFESMLDSVLYAKNKYLAKG 164 (340)
T ss_dssp TTTCHHHHHHHHHHHHEEEE
T ss_pred cCHHHHHHHHHHHHhhcCCC
Confidence 2344567899999999886
No 190
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=84.32 E-value=0.3 Score=37.81 Aligned_cols=79 Identities=8% Similarity=-0.073 Sum_probs=50.6
Q ss_pred CCCceEEccCC--ccHHHHHHhCCCc--------hHHHHhhc----c-CC-CceEEecCCCCcccCc--cceeeeehhcc
Q 042599 131 GSVPHTKAQSG--MDAFAAAAKDARM--------NNLFNQSM----H-NH-TVVEHVSGHMFIEVPN--GQALFMKWILS 192 (214)
Q Consensus 131 g~~~~~dvgGG--~~~~~~~~~~P~l--------~~v~~~~~----~-~~-~rv~~~~gDff~~~P~--~d~y~l~~ILH 192 (214)
....++|+|.| ..+..++...|.. +..++-+. . .. .++++ .|..+..|. .|++++-.+||
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHHH
Confidence 34579999974 4555666677765 12222221 1 12 25666 788765554 49999999999
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
-- ++. ...+.++.++|+||
T Consensus 127 lL-~~~-~~al~~v~~~L~pg 145 (200)
T 3fzg_A 127 VL-KQQ-DVNILDFLQLFHTQ 145 (200)
T ss_dssp HH-HHT-TCCHHHHHHTCEEE
T ss_pred hh-hhh-HHHHHHHHHHhCCC
Confidence 99 443 44444899999876
No 191
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=84.13 E-value=0.51 Score=32.67 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=37.2
Q ss_pred cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
|++.+ |+++..|.+.|+.|...|++++... ....|++|+.++.+.
T Consensus 48 L~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-------r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 48 IRSSIPGISSTILSRRIKDLIDSGLVERRSG-------QITTYALTEKGMNVR 93 (111)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-------SSEEEEECHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHCCCEEEeec-------CcEEEEECccHHHHH
Confidence 78888 9999999999999999999998621 145788888887654
No 192
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=84.10 E-value=0.95 Score=37.06 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=48.5
Q ss_pred CceEEccC--CccHHHHHHhCCC---c------hHHHHhhcc-----CCCceEEecCCCCcccC-c--cceeeeehhccC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-N--GQALFMKWILSD 193 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~~-----~~~rv~~~~gDff~~~P-~--~d~y~l~~ILHd 193 (214)
..++|+|. |..+..+++..+. + +..++.+.. ..++|+++.+|+.+..| . -|+++....+|.
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~ 156 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDE 156 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSC
T ss_pred CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCHHH
Confidence 56899996 6666666666654 2 233333322 23469999999987544 2 399999999998
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
.+ +++.+.|+||
T Consensus 157 ~~--------~~~~~~Lkpg 168 (317)
T 1dl5_A 157 VP--------ETWFTQLKEG 168 (317)
T ss_dssp CC--------HHHHHHEEEE
T ss_pred HH--------HHHHHhcCCC
Confidence 77 3455666664
No 193
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=83.87 E-value=0.61 Score=33.50 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=37.7
Q ss_pred cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
|++.+ |+++..|.+.|+.|...|++++..... + -..-.|++|+.++.|.
T Consensus 45 L~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~--d-~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 45 FRRICPSITQRMLTLQLRELEADGIVHREVYHQ--V-PPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS--S-SCEEEEEECTTGGGGH
T ss_pred HHHHhcccCHHHHHHHHHHHHHCCCEEEEecCC--C-CCeEEEEECHhHHHHH
Confidence 78888 999999999999999999999863211 0 0123689999887765
No 194
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=83.87 E-value=0.36 Score=32.03 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 10 AIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 10 a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
-.++.|...| ||+.+|++...+.|.|+.|...|++...
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3455555555 8889999999999999999999999876
No 195
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=83.42 E-value=0.64 Score=33.58 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=36.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
||+++|+++..+.|+|.-|...|+++...... +.|.....|.++|+-.-|
T Consensus 57 LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d-~~g~~~~~ydL~pL~ekL 106 (135)
T 2v79_A 57 LQEGMSISVEECTNRLRMFIQKGFLFIEECED-QNGIKFEKYSLQPLWGKL 106 (135)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHTSCEEEEEEC-TTCCEEEEEECHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEeEec-CCCceEEEeeHHHHHHHH
Confidence 99999999999999999999999998742211 112223577777765543
No 196
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=83.32 E-value=0.45 Score=37.80 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=35.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR 68 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~ 68 (214)
||+.+|++...+.|+|+.|...|+++.+ . .+.|.+++...
T Consensus 29 la~~~gl~~stv~r~l~~L~~~G~v~~~-----~----~~~Y~lg~~~~ 68 (249)
T 1mkm_A 29 IAEKFNMSVSNAYKYMVVLEEKGFVLRK-----K----DKRYVPGYKLI 68 (249)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEC-----T----TSCEEECTHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEC-----C----CCcEEECHHHH
Confidence 8999999999999999999999999986 1 57899987543
No 197
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=83.17 E-value=0.66 Score=36.13 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCCceEEccC--CccHHHHHHhCCC-c--------hHHHHhhcc------CCCceEEecCCCCcccC-------------
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDAR-M--------NNLFNQSMH------NHTVVEHVSGHMFIEVP------------- 180 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~-l--------~~v~~~~~~------~~~rv~~~~gDff~~~P------------- 180 (214)
....++|+|. |..+..+++..|. . +..++.+.. ...+|+++.+|..+..|
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 3457899996 6666677777662 1 233333321 12469999999876322
Q ss_pred ------c-cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 181 ------N-GQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 181 ------~-~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
. -|++++. +..+....+|+++.+.|+||
T Consensus 140 ~f~~~~~~fD~I~~~-----~~~~~~~~~l~~~~~~L~pg 174 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLD-----ADKENYPNYYPLILKLLKPG 174 (239)
T ss_dssp TTCCSTTCEEEEEEC-----SCGGGHHHHHHHHHHHEEEE
T ss_pred cccCCCCCcCEEEEe-----CCHHHHHHHHHHHHHHcCCC
Confidence 2 2887765 44566678899999999886
No 198
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=82.97 E-value=0.41 Score=32.79 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=26.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.|.|+.|...|+++..
T Consensus 40 la~~l~is~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 40 LATRLPVSRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeeEE
Confidence 8899999999999999999999999875
No 199
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=82.93 E-value=1.3 Score=34.99 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CCCceEEecCCCCcccC---------c-cc
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NHTVVEHVSGHMFIEVP---------N-GQ 183 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~~rv~~~~gDff~~~P---------~-~d 183 (214)
+...++|+|. |..+..+++..| +. +..++.+.. ..++|+++.+|..+.+| . -|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 3457899996 666677777766 21 222222221 13589999999876322 2 28
Q ss_pred eeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 184 ALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++++.. +.+....+|+++.+.|+||
T Consensus 159 ~V~~d~-----~~~~~~~~l~~~~~~LkpG 183 (247)
T 1sui_A 159 FIFVDA-----DKDNYLNYHKRLIDLVKVG 183 (247)
T ss_dssp EEEECS-----CSTTHHHHHHHHHHHBCTT
T ss_pred EEEEcC-----chHHHHHHHHHHHHhCCCC
Confidence 887752 2345678999999999997
No 200
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=82.52 E-value=1.3 Score=37.23 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=51.7
Q ss_pred CceEEccC--CccHHHHHHhCC-Cc-----hHHHHhhc------cCCCceEEecCCCCc-ccCc-cceeeeehhccCCCh
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA-RM-----NNLFNQSM------HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDD 196 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P-~l-----~~v~~~~~------~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d 196 (214)
..++|+|. |..+..++++.. .+ ...++.+. ...++|+++.+|+.+ +.|. -|+++...+.|-...
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~ 144 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLR 144 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTTBTT
T ss_pred CEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhcccc
Confidence 56899996 555555555433 11 12222221 123679999999986 4553 599998766666543
Q ss_pred H-HHHHHHHHhHHhcCCC
Q 042599 197 E-ECLKILKNCCVQCNTG 213 (214)
Q Consensus 197 ~-~~~~IL~~~~~Al~pg 213 (214)
+ .-..+|+.+.+.|+||
T Consensus 145 e~~~~~~l~~~~~~Lkpg 162 (376)
T 3r0q_C 145 ESMFDSVISARDRWLKPT 162 (376)
T ss_dssp TCTHHHHHHHHHHHEEEE
T ss_pred hHHHHHHHHHHHhhCCCC
Confidence 3 3566899999999886
No 201
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=82.45 E-value=2.6 Score=31.25 Aligned_cols=81 Identities=10% Similarity=-0.007 Sum_probs=52.5
Q ss_pred CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc-----CCCceEEecCCCCcc---cCc--cceeeeehhcc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH-----NHTVVEHVSGHMFIE---VPN--GQALFMKWILS 192 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~-----~~~rv~~~~gDff~~---~P~--~d~y~l~~ILH 192 (214)
...++|+|. |..+..+++.... + +..++.+.. ..++++++.+|+.+. .+. -|++++.-.+|
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~ 124 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYN 124 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTT
T ss_pred CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCC
Confidence 356899997 4444444443221 1 233333321 236899999999863 332 39998876654
Q ss_pred CCChHHHHHHHHHhHH--hcCCC
Q 042599 193 DWDDEECLKILKNCCV--QCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~--Al~pg 213 (214)
+..++..++|+.+.+ .|+||
T Consensus 125 -~~~~~~~~~l~~~~~~~~L~pg 146 (189)
T 3p9n_A 125 -VDSADVDAILAALGTNGWTREG 146 (189)
T ss_dssp -SCHHHHHHHHHHHHHSSSCCTT
T ss_pred -cchhhHHHHHHHHHhcCccCCC
Confidence 446788899999998 99987
No 202
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=82.43 E-value=1.7 Score=33.96 Aligned_cols=76 Identities=8% Similarity=-0.049 Sum_probs=48.7
Q ss_pred CceEEccC--CccHHHHHHh----CCCc--------hHHHHhhccCCCceEEecCCCCcc--cC---c--cceeeeehhc
Q 042599 133 VPHTKAQS--GMDAFAAAAK----DARM--------NNLFNQSMHNHTVVEHVSGHMFIE--VP---N--GQALFMKWIL 191 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~----~P~l--------~~v~~~~~~~~~rv~~~~gDff~~--~P---~--~d~y~l~~IL 191 (214)
..++|+|. |..+..+++. .|.- +..++.+....++|+++.||..+. +| . -|++++...
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~- 161 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA- 161 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc-
Confidence 57899996 5555555554 4532 112222222246899999999873 23 2 288887654
Q ss_pred cCCChHHHHHHHHHhHH-hcCCC
Q 042599 192 SDWDDEECLKILKNCCV-QCNTG 213 (214)
Q Consensus 192 Hdw~d~~~~~IL~~~~~-Al~pg 213 (214)
|. +...+|+++.+ .|+||
T Consensus 162 ~~----~~~~~l~~~~r~~LkpG 180 (236)
T 2bm8_A 162 HA----NTFNIMKWAVDHLLEEG 180 (236)
T ss_dssp CS----SHHHHHHHHHHHTCCTT
T ss_pred hH----hHHHHHHHHHHhhCCCC
Confidence 53 45679999996 99987
No 203
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=82.35 E-value=0.87 Score=33.42 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=41.6
Q ss_pred HHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599 5 MTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS 67 (214)
Q Consensus 5 ~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s 67 (214)
.+|.--.++.|...| ||+.+|++...+.+-|+.|...|+++... +|. ...|++|+..
T Consensus 53 ~aL~~p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~-----~Gr-~~~y~lt~~~ 118 (151)
T 3f6v_A 53 EVAAEPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK-----DGR-FRYYRLDPQG 118 (151)
T ss_dssp HHHTSHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE-----ETT-EEEEEECHHH
T ss_pred HHhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-----cCC-EEEEEEChHH
Confidence 344445566666666 99999999999999999999999998762 110 2356766643
No 204
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=82.34 E-value=0.58 Score=37.12 Aligned_cols=77 Identities=13% Similarity=0.041 Sum_probs=49.1
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDWD 195 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~ 195 (214)
....++|+|. |..+..+++..+.+ +..++.+.. ..+ ++++.+|+.+.+|. -|+++....
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~----- 193 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLY----- 193 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECC-----
T ss_pred CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCc-----
Confidence 3457899996 55555556555532 222322221 122 89999999877663 488876432
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
.+....+++++.+.|+||
T Consensus 194 ~~~~~~~l~~~~~~Lkpg 211 (254)
T 2nxc_A 194 AELHAALAPRYREALVPG 211 (254)
T ss_dssp HHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 234678999999999886
No 205
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=82.31 E-value=1.2 Score=34.49 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=48.5
Q ss_pred ceEEccC--CccHHHHHHhCC-Cc--------hHHHHhhcc------CC-CceEEecCCCCcc---cCcc--ceeeeehh
Q 042599 134 PHTKAQS--GMDAFAAAAKDA-RM--------NNLFNQSMH------NH-TVVEHVSGHMFIE---VPNG--QALFMKWI 190 (214)
Q Consensus 134 ~~~dvgG--G~~~~~~~~~~P-~l--------~~v~~~~~~------~~-~rv~~~~gDff~~---~P~~--d~y~l~~I 190 (214)
.++|+|. |..+..+++..| +- +..++.+.. .. ++|+++.||..+. ++.+ |++++..
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~- 137 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV- 137 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC-
Confidence 6889996 666667777655 21 222332221 12 5899999998763 3222 8887653
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+.......++.+.+.|+||
T Consensus 138 ----~~~~~~~~l~~~~~~LkpG 156 (221)
T 3dr5_A 138 ----SPMDLKALVDAAWPLLRRG 156 (221)
T ss_dssp ----CTTTHHHHHHHHHHHEEEE
T ss_pred ----cHHHHHHHHHHHHHHcCCC
Confidence 3344566899999999886
No 206
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=82.26 E-value=0.72 Score=33.68 Aligned_cols=69 Identities=10% Similarity=-0.025 Sum_probs=44.6
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccCc--cceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN--GQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw~ 195 (214)
..++|+|. |.....+++ +.. +..++.+.. ..++++++.+|+.+++|. -|++++..+
T Consensus 37 ~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~----- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT----- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-----
T ss_pred CEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-----
Confidence 56899997 444455555 321 233333221 125799999999987774 499998877
Q ss_pred hHHHHHHHHHhHHh
Q 042599 196 DEECLKILKNCCVQ 209 (214)
Q Consensus 196 d~~~~~IL~~~~~A 209 (214)
+....+|+++.+.
T Consensus 110 -~~~~~~l~~~~~~ 122 (183)
T 2yxd_A 110 -KNIEKIIEILDKK 122 (183)
T ss_dssp -SCHHHHHHHHHHT
T ss_pred -ccHHHHHHHHhhC
Confidence 3445677777776
No 207
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=82.25 E-value=1.7 Score=34.17 Aligned_cols=82 Identities=7% Similarity=-0.023 Sum_probs=49.0
Q ss_pred CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc------CCCceEEecCCCCcc---cCc--cceeeeehhc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH------NHTVVEHVSGHMFIE---VPN--GQALFMKWIL 191 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~------~~~rv~~~~gDff~~---~P~--~d~y~l~~IL 191 (214)
...++|+|. |..+..++++.+. + +..++.+.. ..++|+++.+|+.+. +|. -|+++..--.
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy 129 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence 356899996 5555556666662 2 233333321 235799999999863 333 3888873221
Q ss_pred cC------------------CChHHHHHHHHHhHHhcCCC
Q 042599 192 SD------------------WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 192 Hd------------------w~d~~~~~IL~~~~~Al~pg 213 (214)
+. ........+|+.+.+.|+||
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 169 (259)
T 3lpm_A 130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG 169 (259)
T ss_dssp -----------------------HHHHHHHHHHHHHEEEE
T ss_pred CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence 11 11234567999999999886
No 208
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=82.25 E-value=0.46 Score=31.74 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.+-|+.|...|+++..
T Consensus 42 la~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 42 LCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 8889999999999999999999999876
No 209
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=82.12 E-value=0.56 Score=32.95 Aligned_cols=39 Identities=10% Similarity=-0.020 Sum_probs=32.9
Q ss_pred HHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 9 TAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 9 ~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
--.++.|+..| ||+.+|++...+.+.|+.|...|++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 33455666666 8889999999999999999999999875
No 210
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=81.93 E-value=0.84 Score=31.16 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=36.4
Q ss_pred cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+ |+++..+.+.|+.|...|++++.... .+ ...-.|.+|+.++.+.
T Consensus 33 La~~l~~is~~tls~~L~~Le~~GlI~r~~~~--~d-~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 33 LKRLMPNITQKMLTQQLRELEADGVINRIVYN--QV-PPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEC--SS-SCEEEEEECTTGGGGH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHCCCEEEeecC--CC-CCeEEEEECccHHHHH
Confidence 88888 99999999999999999999976321 10 0123588888765543
No 211
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=81.04 E-value=1.6 Score=35.06 Aligned_cols=76 Identities=7% Similarity=-0.029 Sum_probs=50.2
Q ss_pred CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~~ILHdw 194 (214)
...++|+|. |..+..+++..+. . +..++.+.. ...+++++.+|.++..+. -|++++. .
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~-----~ 200 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG-----Y 200 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC-----C
T ss_pred CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC-----C
Confidence 457899996 6666677776664 2 233333321 134699999999986553 4888773 2
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+ .....+|+++.+.|+||
T Consensus 201 p-~~~~~~l~~~~~~Lkpg 218 (278)
T 2frn_A 201 V-VRTHEFIPKALSIAKDG 218 (278)
T ss_dssp C-SSGGGGHHHHHHHEEEE
T ss_pred c-hhHHHHHHHHHHHCCCC
Confidence 2 23367888888888886
No 212
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=80.82 E-value=0.53 Score=30.80 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=35.8
Q ss_pred cCCCCCCChh-hHHHHHHHHhcCcceeeecccccCCCccccceecchhccc
Q 042599 20 LPKNNKETPI-ILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRY 69 (214)
Q Consensus 20 LA~~~~~~~~-~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~ 69 (214)
||+.+|++.. .++|.|..|...|+++... .| .+ .|.+|+.++.
T Consensus 31 iA~~Lgit~~~aVr~hL~~Le~eGlV~~~~-----~g-RP-~w~LT~~g~~ 74 (79)
T 1xmk_A 31 LAKNIGLTKARDINAVLIDMERQGDVYRQG-----TT-PP-IWHLTDKKRE 74 (79)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHTTSEEEEC-----SS-SC-EEEECHHHHT
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCEEecC-----CC-CC-CeEeCHhHHh
Confidence 9999999999 9999999999999998641 11 24 8999988764
No 213
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=80.76 E-value=3.7 Score=35.49 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=50.2
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhh-------cc-----C--CCceEEecCCCC-cc--c---C-
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQS-------MH-----N--HTVVEHVSGHMF-IE--V---P- 180 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~-------~~-----~--~~rv~~~~gDff-~~--~---P- 180 (214)
...++|+|. |..+..+++..|.. +..++.+ .. . ..+|+++.+|-+ ++ + .
T Consensus 243 g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~ 322 (433)
T 1u2z_A 243 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP 322 (433)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGG
T ss_pred CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccC
Confidence 356999996 66666666655532 2223322 11 1 368999887544 42 2 1
Q ss_pred ccceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 181 NGQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 181 ~~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
..|++++.+.++ . ++....|+++.+.|+||
T Consensus 323 ~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpG 352 (433)
T 1u2z_A 323 QCDVILVNNFLF--D-EDLNKKVEKILQTAKVG 352 (433)
T ss_dssp GCSEEEECCTTC--C-HHHHHHHHHHHTTCCTT
T ss_pred CCCEEEEeCccc--c-ccHHHHHHHHHHhCCCC
Confidence 249999877774 2 45567789999999998
No 214
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=80.53 E-value=0.37 Score=38.58 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=34.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR 68 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~ 68 (214)
||+.+|++...+.|+|+.|+..|++++++ .++|.+++...
T Consensus 44 ia~~~gl~kstv~r~l~tL~~~G~v~~~~---------~~~Y~lg~~~~ 83 (260)
T 2o0y_A 44 LVEGTKLPKTTVVRLVATMCARSVLTSRA---------DGSYSLGPEML 83 (260)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTTSEEECT---------TSCEEECHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEECC---------CCeEEecHHHH
Confidence 88899999999999999999999999862 33899987543
No 215
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=80.18 E-value=2.1 Score=34.29 Aligned_cols=80 Identities=9% Similarity=0.051 Sum_probs=54.4
Q ss_pred CCceEEccCCccHHHHHHhCCCc--------hH---HHHhhc-cCCCceEEecCCCCcc-cCc-cceeeeehhccCCChH
Q 042599 132 SVPHTKAQSGMDAFAAAAKDARM--------NN---LFNQSM-HNHTVVEHVSGHMFIE-VPN-GQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgGG~~~~~~~~~~P~l--------~~---v~~~~~-~~~~rv~~~~gDff~~-~P~-~d~y~l~~ILHdw~d~ 197 (214)
...++|+|.|...+.+... |.. +. +.+... ......++...|+... .|. +|+.++--++|.-.++
T Consensus 106 p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE~q 184 (253)
T 3frh_A 106 PRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLERE 184 (253)
T ss_dssp CSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHHHH
T ss_pred CCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhhhh
Confidence 3569999987777766544 543 22 222221 1346789999999964 443 6999999888888777
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
+-...+ ++.++|.++
T Consensus 185 ~~~~~~-~ll~aL~~~ 199 (253)
T 3frh_A 185 QAGSAM-ALLQSLNTP 199 (253)
T ss_dssp STTHHH-HHHHHCBCS
T ss_pred chhhHH-HHHHHhcCC
Confidence 766666 777788765
No 216
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=79.98 E-value=3.6 Score=30.78 Aligned_cols=77 Identities=9% Similarity=0.019 Sum_probs=51.5
Q ss_pred CceEEccC--CccHHHHHHhCCC-c------hHHHHhhccCC----CceEEecCCCCcccCc-cceeeeehhccCCChHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMHNH----TVVEHVSGHMFIEVPN-GQALFMKWILSDWDDEE 198 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~~~----~rv~~~~gDff~~~P~-~d~y~l~~ILHdw~d~~ 198 (214)
..++|+|. |..+..+++..+. + +..++.+.... -+++++.+|+.+ +|. -|++++.-.+|.+....
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~ 129 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQRKHA 129 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSSSTTT
T ss_pred CEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccccCCc
Confidence 56899996 5555556655443 2 23333332211 179999999987 453 59999988888888766
Q ss_pred HHHHHHHhHHhc
Q 042599 199 CLKILKNCCVQC 210 (214)
Q Consensus 199 ~~~IL~~~~~Al 210 (214)
..++|+++.+.+
T Consensus 130 ~~~~l~~~~~~l 141 (207)
T 1wy7_A 130 DRPFLLKAFEIS 141 (207)
T ss_dssp THHHHHHHHHHC
T ss_pred hHHHHHHHHHhc
Confidence 677888877655
No 217
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=79.91 E-value=1.7 Score=34.48 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=47.0
Q ss_pred CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc------C--CCceEEecCCCCcc-cCc--cceeeeehh
Q 042599 133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH------N--HTVVEHVSGHMFIE-VPN--GQALFMKWI 190 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~------~--~~rv~~~~gDff~~-~P~--~d~y~l~~I 190 (214)
..++|+|. |..+..+++. .|.. +..++.+.. . .++++++.+|+.+. .|. .|++++ ++
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~-~~ 179 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-DM 179 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-ES
T ss_pred CEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE-CC
Confidence 46899996 5555666664 3432 233333221 1 46899999999864 443 398887 33
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.+.| .+|+++.+.|+||
T Consensus 180 ~~~~------~~l~~~~~~L~pg 196 (280)
T 1i9g_A 180 LAPW------EVLDAVSRLLVAG 196 (280)
T ss_dssp SCGG------GGHHHHHHHEEEE
T ss_pred cCHH------HHHHHHHHhCCCC
Confidence 3333 6889999998876
No 218
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=79.72 E-value=0.69 Score=31.11 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.+-|+.|...|+++..
T Consensus 42 la~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 42 LEQQIGIGQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 8889999999999999999999999876
No 219
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=79.43 E-value=0.57 Score=37.36 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=38.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+|++...+.|+|+.|...|++++.. . ...|.+|+.++.+.
T Consensus 172 LA~~lglsksTv~r~L~~Le~~GlV~r~~----r----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 172 LAKMLDKSEKTLINKIAELKKFGILTQKG----K----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEET----T----TTEEEECHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEeC----C----ccEEEECHHHHHHH
Confidence 89999999999999999999999999862 1 56799999988764
No 220
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=79.32 E-value=0.49 Score=33.80 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=37.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+|+++..+.|+++.|...|++.... ...|.+|+.++.+.
T Consensus 28 la~~l~vs~~tvs~~l~~Le~~Glv~r~~---------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 28 IAEALAVHPSSVTKMVQKLDKDEYLIYEK---------YRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEET---------TTEEEECHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEEee---------CceEEEchhHHHHH
Confidence 89999999999999999999999999861 46789999887654
No 221
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=79.27 E-value=1.6 Score=33.81 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=47.1
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc------CCCceEEecCCCCccc-Cc--cceeeeehhccCCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH------NHTVVEHVSGHMFIEV-PN--GQALFMKWILSDWD 195 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~------~~~rv~~~~gDff~~~-P~--~d~y~l~~ILHdw~ 195 (214)
..++|+|. |..+..+++....+ +..++.+.. ..++++++.+|+.+.. +. .|++++ +.+
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~-----~~~ 167 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV-----DVR 167 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE-----CSS
T ss_pred CEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE-----CCc
Confidence 56899996 55555666652211 223332221 1268999999999876 53 398886 333
Q ss_pred hHHHHHHHHHhHHhcCCC
Q 042599 196 DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 196 d~~~~~IL~~~~~Al~pg 213 (214)
+...+|+++.+.|+||
T Consensus 168 --~~~~~l~~~~~~L~~g 183 (248)
T 2yvl_A 168 --EPWHYLEKVHKSLMEG 183 (248)
T ss_dssp --CGGGGHHHHHHHBCTT
T ss_pred --CHHHHHHHHHHHcCCC
Confidence 2346789999999987
No 222
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=79.18 E-value=0.65 Score=32.37 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=32.8
Q ss_pred HHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 7 MKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 7 L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
|.--.++.|...| ||+.+|++...+.+.|+.|...|++...
T Consensus 18 L~~~~r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 18 LADPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp HSSHHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEE
T ss_pred hCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 3334455555555 8888999999999999999999999875
No 223
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=79.15 E-value=0.89 Score=34.04 Aligned_cols=81 Identities=12% Similarity=0.015 Sum_probs=50.6
Q ss_pred CceEEccC--CccHHHHHHhCC--CchH-HHHh-hccCCCceEEecCCCCcc--------------------------cC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA--RMNN-LFNQ-SMHNHTVVEHVSGHMFIE--------------------------VP 180 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P--~l~~-v~~~-~~~~~~rv~~~~gDff~~--------------------------~P 180 (214)
..++|+|. |..+..++++.| ...- -++. .+...++++++.+|+.+. +|
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 103 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQ 103 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHT
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHHHhhcC
Confidence 56899996 555566777776 2211 1111 122346799999999864 35
Q ss_pred c--cceeeeehhccCC----ChHH-----HHHHHHHhHHhcCCC
Q 042599 181 N--GQALFMKWILSDW----DDEE-----CLKILKNCCVQCNTG 213 (214)
Q Consensus 181 ~--~d~y~l~~ILHdw----~d~~-----~~~IL~~~~~Al~pg 213 (214)
. -|+++....+|.- .|.. +.++|+++.+.|+||
T Consensus 104 ~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg 147 (201)
T 2plw_A 104 DKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIG 147 (201)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence 3 3998876666531 1221 235899999999886
No 224
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=79.07 E-value=0.88 Score=35.04 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=30.7
Q ss_pred CceEEecCCCCcccCc-c--ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 166 TVVEHVSGHMFIEVPN-G--QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 166 ~rv~~~~gDff~~~P~-~--d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++++++.+|..++.|. + |+++....+|... +++.+.|+||
T Consensus 145 ~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~Lkpg 187 (227)
T 1r18_A 145 GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASG 187 (227)
T ss_dssp TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEE
T ss_pred CceEEEECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCC
Confidence 5799999999987664 3 9999999998765 4556666664
No 225
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=78.99 E-value=0.88 Score=32.09 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=31.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecch
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLAS 65 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~ 65 (214)
||+.+|+++..++++|+.|...|+++... | ..+.|.++.
T Consensus 32 la~~~~i~~~~v~~il~~L~~~Glv~~~~------g-~~ggy~L~~ 70 (129)
T 2y75_A 32 IAQTNNLSEHYLEQLVSPLRNAGLVKSIR------G-AYGGYVLGS 70 (129)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTSEEEC-----------CCEEESS
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCceEecC------C-CCCceEeCC
Confidence 99999999999999999999999998752 1 135677654
No 226
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=78.82 E-value=1.1 Score=35.52 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=36.2
Q ss_pred eE-EecCCCCcccC-------ccceeeeehhccCC--ChHHHHHHHHHhHHhcCCC
Q 042599 168 VE-HVSGHMFIEVP-------NGQALFMKWILSDW--DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 168 v~-~~~gDff~~~P-------~~d~y~l~~ILHdw--~d~~~~~IL~~~~~Al~pg 213 (214)
|+ ++.+|+.+..| +-|+++...+||.- +.++-.++|+++++.|+||
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG 190 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 190 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 54 88999987422 24999999999862 3367788999999999997
No 227
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=78.59 E-value=0.87 Score=30.34 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=27.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..++++..++|.|..|...|++.+.
T Consensus 22 LA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 22 LSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999987
No 228
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=78.27 E-value=1.2 Score=30.46 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=36.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
|++..++++..+.++|+-|...|+++..... .+|-....|++|+.++...
T Consensus 32 l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~--~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 32 IKLIASIKESTLYPILKKLEKAGYLSTYTQE--HQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEEEEE--ETTEEEEEEEECHHHHHHH
T ss_pred HHHHhCCCcChHHHHHHHHHHCCCeEEEeec--CCCCcceEEEECHHHHHHH
Confidence 7778899999999999999999999875321 0110123588999887654
No 229
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=78.15 E-value=0.73 Score=36.95 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=36.0
Q ss_pred eEEecCCCCcc-------cCc--cceeeeehhccCCChH--HHHHHHHHhHHhcCCC
Q 042599 168 VEHVSGHMFIE-------VPN--GQALFMKWILSDWDDE--ECLKILKNCCVQCNTG 213 (214)
Q Consensus 168 v~~~~gDff~~-------~P~--~d~y~l~~ILHdw~d~--~~~~IL~~~~~Al~pg 213 (214)
++++.+|+.+. +|+ -|+++...+||..+++ +-.++|+++++.|+||
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpG 208 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 56677798763 233 3999999999985544 7789999999999987
No 230
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=78.01 E-value=0.57 Score=33.25 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=36.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|+++.. ...|.+|+.++.+.
T Consensus 37 la~~l~is~~tv~~~l~~Le~~Gli~r~----------~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 37 IAKDLKIAPSSVFEEVSHLEEKGLVKKK----------EDGVWITNNGTRSI 78 (139)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE----------TTEEEECHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHCCCEEec----------CCeEEEChhHHHHH
Confidence 8899999999999999999999999986 46688888876553
No 231
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=77.48 E-value=1.8 Score=33.92 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=50.0
Q ss_pred CCCceEEccC--CccHHHHHHhCCC-c---------------hHHHHhhccCCCceEEecCCCCcccC--------c-cc
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDAR-M---------------NNLFNQSMHNHTVVEHVSGHMFIEVP--------N-GQ 183 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~-l---------------~~v~~~~~~~~~rv~~~~gDff~~~P--------~-~d 183 (214)
+...++|+|. |..+..+++..|. - ...+... ...++|+++.||..+..| . -|
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-KQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-TCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3457899996 6667777776652 1 1111111 123589999999886432 2 38
Q ss_pred eeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 184 ALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
++++.. +.+.....|+++.+.|+||
T Consensus 139 ~V~~d~-----~~~~~~~~l~~~~~~LkpG 163 (242)
T 3r3h_A 139 FIFIDA-----DKTNYLNYYELALKLVTPK 163 (242)
T ss_dssp EEEEES-----CGGGHHHHHHHHHHHEEEE
T ss_pred EEEEcC-----ChHHhHHHHHHHHHhcCCC
Confidence 887753 3455667899999999886
No 232
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=77.46 E-value=2.4 Score=32.91 Aligned_cols=76 Identities=4% Similarity=-0.057 Sum_probs=49.7
Q ss_pred CCceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCc-cc----Cc-cceeeeehh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-EV----PN-GQALFMKWI 190 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~~----P~-~d~y~l~~I 190 (214)
...++|+|. |..+..++...|.. +..++.+.. ..++|+++.+|+.+ +. +. -|+++...+
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence 356899995 66667777666653 222222221 23469999999875 22 22 399998763
Q ss_pred ccCCChHHHHHHHHHhHHhcCCC
Q 042599 191 LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 191 LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.+...+|+.+.+.|+||
T Consensus 151 ------~~~~~~l~~~~~~Lkpg 167 (240)
T 1xdz_A 151 ------ARLSVLSELCLPLVKKN 167 (240)
T ss_dssp ------SCHHHHHHHHGGGEEEE
T ss_pred ------CCHHHHHHHHHHhcCCC
Confidence 23578999999999886
No 233
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=75.90 E-value=1.3 Score=30.09 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=36.7
Q ss_pred cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
|++.+ |+++..+.+.|+.|...|++++.... .+ ...-.|.+|+.++.+.
T Consensus 44 L~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~--~d-~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 44 LKRAIPGISEKMLIDELKFLCGKGLIKKKQYP--EV-PPRVEYSLTPLGEKVL 93 (107)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHTTSEEEEEEC--SS-SCEEEEEECHHHHTTH
T ss_pred HHHHcccCCHHHHHHHHHHHHHCCCEEEeecC--CC-CCeeEEEECccHHHHH
Confidence 88888 59999999999999999999976321 00 0123589999876554
No 234
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=75.71 E-value=1.1 Score=38.57 Aligned_cols=80 Identities=8% Similarity=-0.093 Sum_probs=50.2
Q ss_pred CCCceEEccCC--------ccHHHHHHh-CCCchHH---HHhhc-cCCCceEEecCCCCc-ccC------c--cceeeee
Q 042599 131 GSVPHTKAQSG--------MDAFAAAAK-DARMNNL---FNQSM-HNHTVVEHVSGHMFI-EVP------N--GQALFMK 188 (214)
Q Consensus 131 g~~~~~dvgGG--------~~~~~~~~~-~P~l~~v---~~~~~-~~~~rv~~~~gDff~-~~P------~--~d~y~l~ 188 (214)
....++|+|.| -.+..++++ +|+..-+ +...| ...++|+++.+|+.+ +++ . -|+++..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisd 295 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDD 295 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEEC
Confidence 34568999854 234455554 3643100 01111 234789999999986 343 2 2988764
Q ss_pred hhccCCChHHHHHHHHHhHHhcCCC
Q 042599 189 WILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
..|.| ++..+.|+++++.|+||
T Consensus 296 -gsH~~--~d~~~aL~el~rvLKPG 317 (419)
T 3sso_A 296 -GSHIN--AHVRTSFAALFPHVRPG 317 (419)
T ss_dssp -SCCCH--HHHHHHHHHHGGGEEEE
T ss_pred -Ccccc--hhHHHHHHHHHHhcCCC
Confidence 56766 45678899999999987
No 235
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=75.49 E-value=1.2 Score=34.06 Aligned_cols=73 Identities=12% Similarity=-0.000 Sum_probs=46.7
Q ss_pred CceEEccC--CccHHHHHHhC-----CCc--------hHHHHhhcc-----C-----CCceEEecCCCCccc----C-c-
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-----ARM--------NNLFNQSMH-----N-----HTVVEHVSGHMFIEV----P-N- 181 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-----P~l--------~~v~~~~~~-----~-----~~rv~~~~gDff~~~----P-~- 181 (214)
..++|+|. |..+..+++.. |+. +..++.+.. . .++++++.+|..+.. + .
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 56899996 55555666554 322 233333321 1 468999999998754 3 2
Q ss_pred -cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 182 -GQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 182 -~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
-|+++....+|.. ++++.+.|+||
T Consensus 162 ~fD~I~~~~~~~~~--------~~~~~~~Lkpg 186 (227)
T 2pbf_A 162 LFDAIHVGASASEL--------PEILVDLLAEN 186 (227)
T ss_dssp CEEEEEECSBBSSC--------CHHHHHHEEEE
T ss_pred CcCEEEECCchHHH--------HHHHHHhcCCC
Confidence 3999999988864 46666677665
No 236
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=75.45 E-value=1.5 Score=33.24 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=47.5
Q ss_pred CCceEEccC--CccHHHHHHhCCC-c------hHHHHhhcc-----CC--CceEEecCCCCcccC-----c-cceeeeeh
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR-M------NNLFNQSMH-----NH--TVVEHVSGHMFIEVP-----N-GQALFMKW 189 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~-l------~~v~~~~~~-----~~--~rv~~~~gDff~~~P-----~-~d~y~l~~ 189 (214)
...++|+|. |..+..++.+.+. + +..++.+.. .. ++++++.+|+++..| + -|++++..
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 357899996 4444554555442 1 233333321 12 589999999886322 3 58888876
Q ss_pred hccCCChHHHHHHHHHhH--HhcCCC
Q 042599 190 ILSDWDDEECLKILKNCC--VQCNTG 213 (214)
Q Consensus 190 ILHdw~d~~~~~IL~~~~--~Al~pg 213 (214)
.+| .+....+|+.+. +.|+||
T Consensus 134 ~~~---~~~~~~~l~~~~~~~~Lkpg 156 (201)
T 2ift_A 134 PFH---FNLAEQAISLLCENNWLKPN 156 (201)
T ss_dssp CSS---SCHHHHHHHHHHHTTCEEEE
T ss_pred CCC---CccHHHHHHHHHhcCccCCC
Confidence 655 234556777774 457775
No 237
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=75.37 E-value=0.72 Score=32.95 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=37.0
Q ss_pred cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
|++.+ |+++..|.+.|+.|...|++++.... ++ ...-.|.+|+.++.+.
T Consensus 54 La~~l~gis~~tls~~L~~Le~~GlV~r~~~~--~d-~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 54 LRRXMGGVSEXMLAQSLQALEQDGFLNRVSYP--VV-PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEC--SS-SCEEEEEECHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHCCcEEEEecC--CC-CCeEEEEECccHHHHH
Confidence 88888 79999999999999999999976321 00 0123689998876654
No 238
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=75.37 E-value=0.84 Score=33.17 Aligned_cols=48 Identities=25% Similarity=0.247 Sum_probs=36.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
|++.+|++...+.+.|+.|...|+++..... ++ . .-.|.+|+.++.+.
T Consensus 43 La~~lgis~~tls~~L~~Le~~GlI~r~~~~--~d-~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 43 FQKSLGLAKNILAARLRNLVEHGVMVAVPAE--SG-S-HQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTTSEEEEECS--SS-S-CEEEEECHHHHTTH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEEEecC--CC-C-eEEEEECchHHHHH
Confidence 8888999999999999999999999986321 00 1 23688888876554
No 239
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=75.22 E-value=1.7 Score=30.69 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=38.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPN 73 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 73 (214)
||+.++++...+.++++.|...|+++..... .+ .....+.+|+.++.+...
T Consensus 60 la~~l~~~~~tvs~~l~~L~~~glv~r~~~~--~d-~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 60 MGEQLYLDSGTLTPMLKRMEQQGLITRKRSE--ED-ERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHTSEECCBCS--SC-TTSBEEEECHHHHSGGGG
T ss_pred HHHHHCCCcCcHHHHHHHHHHCCCEEeccCC--CC-CCeeEEEECHhHHHHHHH
Confidence 8999999999999999999999999875311 00 012347888888877643
No 240
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=75.08 E-value=1.3 Score=32.53 Aligned_cols=80 Identities=8% Similarity=-0.155 Sum_probs=45.9
Q ss_pred CCceEEccC--CccHHHHHHhCCC--c------hHHHHhhcc------CCCceEEecCCCCccc------Cc-cceeeee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR--M------NNLFNQSMH------NHTVVEHVSGHMFIEV------PN-GQALFMK 188 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~--l------~~v~~~~~~------~~~rv~~~~gDff~~~------P~-~d~y~l~ 188 (214)
...++|+|. |..+..+++ .+. + +..++.+.. ..++++++.+|+.+.. +. -|++++.
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 356899997 444444454 332 1 233333321 1257999999998732 22 3999988
Q ss_pred hhccCCChHHHHHHHHHhHHhcCCC
Q 042599 189 WILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
...|....+...+.+.. .+.|+||
T Consensus 124 ~~~~~~~~~~~~~~l~~-~~~L~~g 147 (187)
T 2fhp_A 124 PPYAKQEIVSQLEKMLE-RQLLTNE 147 (187)
T ss_dssp CCGGGCCHHHHHHHHHH-TTCEEEE
T ss_pred CCCCchhHHHHHHHHHH-hcccCCC
Confidence 77664444444444431 5667665
No 241
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=75.01 E-value=0.93 Score=29.47 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=27.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..++++..++|.|..|...|++.+.
T Consensus 22 La~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 22 ISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 9999999999999999999999999986
No 242
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=74.53 E-value=1.4 Score=34.15 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=50.2
Q ss_pred CCCceEEccC--CccHHHHHHhCCC---c------hHHHHhhcc------CCCceEEecCCCCcc---cC-----c-cce
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSMH------NHTVVEHVSGHMFIE---VP-----N-GQA 184 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~~------~~~rv~~~~gDff~~---~P-----~-~d~ 184 (214)
....++|+|. |..+..+++..|. + +..++.+.. ..++|+++.+|..+. +| . -|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 3457899996 6666777777662 1 223332221 135799999998653 22 2 287
Q ss_pred eeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 185 LFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 185 y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
+++.. +.+....+|+++.+.|+||
T Consensus 152 V~~d~-----~~~~~~~~l~~~~~~Lkpg 175 (232)
T 3cbg_A 152 IFIDA-----DKRNYPRYYEIGLNLLRRG 175 (232)
T ss_dssp EEECS-----CGGGHHHHHHHHHHTEEEE
T ss_pred EEECC-----CHHHHHHHHHHHHHHcCCC
Confidence 77643 3456678899999999886
No 243
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=73.51 E-value=1.7 Score=31.44 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=39.1
Q ss_pred HHHHHHHHhCchh---HH----cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecch
Q 042599 5 MTMKTAIQLGVLE---IM----LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLAS 65 (214)
Q Consensus 5 ~~L~~a~~lgifd---~L----LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~ 65 (214)
-+|++.+.|.... .+ ||+..++++..|+++|..|...|+++... | ..|.|.++.
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~r------G-~~GGy~Lar 72 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVR------G-AKGGYQLRV 72 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECS------S-SSSEEEESS
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecC------C-CCCCeeecC
Confidence 3566666665431 13 99999999999999999999999998652 1 145676644
No 244
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=73.48 E-value=2.3 Score=34.92 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=45.0
Q ss_pred CceEEccC--CccHHHHHHh-CCCc--------hHHHHhhcc----------------CCCceEEecCCCCcc---cCc-
Q 042599 133 VPHTKAQS--GMDAFAAAAK-DARM--------NNLFNQSMH----------------NHTVVEHVSGHMFIE---VPN- 181 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~-~P~l--------~~v~~~~~~----------------~~~rv~~~~gDff~~---~P~- 181 (214)
..++|+|. |..+..+++. .|.. +..++.+.. ...+|+++.+|+.+. +|.
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~ 186 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSL 186 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCC
Confidence 56899996 5555566665 4521 223332221 135899999999873 443
Q ss_pred -cceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 182 -GQALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 182 -~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
-|++++. ..+.|. +|+++.+.|+||
T Consensus 187 ~fD~V~~~-~~~~~~------~l~~~~~~Lkpg 212 (336)
T 2b25_A 187 TFDAVALD-MLNPHV------TLPVFYPHLKHG 212 (336)
T ss_dssp -EEEEEEC-SSSTTT------THHHHGGGEEEE
T ss_pred CeeEEEEC-CCCHHH------HHHHHHHhcCCC
Confidence 3888873 333332 788889988886
No 245
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=73.43 E-value=1.2 Score=29.63 Aligned_cols=46 Identities=7% Similarity=0.203 Sum_probs=35.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|++... .++ ....|.+|+.++.+.
T Consensus 36 La~~l~i~~~tvs~~l~~Le~~Glv~~~-----~d~-R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 36 IASKVNSPHSYVWLIIKKFEEAKMVECE-----LEG-RTKIIRLTDKGQKIA 81 (95)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHTTSEEEE-----EET-TEEEEEECHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCcCccCC-----CCC-CeEEEEEChhHHHHH
Confidence 8999999999999999999999999332 110 022588888877654
No 246
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=73.19 E-value=0.87 Score=30.94 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.+.|+.|...|++...
T Consensus 45 la~~l~is~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 45 ISHQLNLSQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 8899999999999999999999999875
No 247
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=72.82 E-value=0.42 Score=32.85 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|+++..+.+.|+.|...|+++..
T Consensus 44 La~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 44 IATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 8889999999999999999999999875
No 248
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=72.37 E-value=1.7 Score=30.32 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=36.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 53 la~~l~~~~~tvs~~l~~L~~~gli~r~~~~--~d-~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 53 LIENMGCVPSNMTTMIQRMKRDGYVMTEKNP--ND-QRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHCSSCCTTHHHHHHHHHHTTSEEEEECS--SC-TTCEEEEECHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHHCCCeeeccCC--CC-CceeEEEECHHHHHHH
Confidence 8889999999999999999999999875311 10 0123367788777654
No 249
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=71.82 E-value=1.3 Score=30.52 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=36.9
Q ss_pred cCCCC-CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNN-KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~-~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+ +++...+.+.|+.|...|+++..... .+ ...-.|.+|+.++.+.
T Consensus 41 La~~l~~is~~tvs~~L~~Le~~GlI~r~~~~--~d-~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 41 LMRALDGITQRVLTDRLREMEKDGLVHRESFN--EL-PPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHTSEEEEEEC--CS-SCEEEEEECHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHCCCEEEeecC--CC-CCeEEEEECHhHHHHH
Confidence 88999 99999999999999999999976321 00 0123588888876553
No 250
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=71.66 E-value=3.5 Score=32.86 Aligned_cols=75 Identities=8% Similarity=-0.029 Sum_probs=49.9
Q ss_pred CCceEEccC--CccHHHHHHhCC--Cc------hHHHHhhcc-----CCCceEEecCCCCcccCc---cceeeeehhccC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA--RM------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN---GQALFMKWILSD 193 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P--~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P~---~d~y~l~~ILHd 193 (214)
...++|+|. |..+..++++.+ .+ +..++.+.. ..++++++.+|.++. |. -|++++.-..
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH-- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS--
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc--
Confidence 357899996 666677777766 22 333433322 235789999999875 52 3888775432
Q ss_pred CChHHHHHHHHHhHHhcCCC
Q 042599 194 WDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~Al~pg 213 (214)
.+.++|+.+.+.|+||
T Consensus 197 ----~~~~~l~~~~~~Lkpg 212 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDR 212 (272)
T ss_dssp ----SGGGGHHHHHHHEEEE
T ss_pred ----cHHHHHHHHHHHcCCC
Confidence 5566888888888875
No 251
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=71.61 E-value=1.4 Score=30.76 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=36.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|+++..... .+ .....+.+|+.++.+.
T Consensus 58 la~~l~~~~~tvs~~l~~L~~~glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 58 LGRLTAMDAATIKGVVERLDKRGLIQRSADP--DD-GRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCEEEEEET--TE-EEEEEEEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeeCCC--CC-CCeeeeEECHhHHHHH
Confidence 8899999999999999999999999875311 00 0012477788776654
No 252
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=71.52 E-value=1.5 Score=30.92 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=36.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 57 la~~l~~~~~tvs~~l~~L~~~gli~r~~~~--~d-~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 57 VVTELALDTGTVSPLLKRMEQVDLIKRERSE--VD-QREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHTTCCTTTHHHHHHHHHHTTSEEEEECS--SS-TTCEEEEECHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCEEeecCC--CC-cceEEEEEChHHHHHH
Confidence 8889999999999999999999999886321 10 0122567787776654
No 253
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=71.38 E-value=8.9 Score=31.23 Aligned_cols=81 Identities=7% Similarity=-0.004 Sum_probs=49.4
Q ss_pred CceEEccC--CccHHHHHHhCCC---c------hHHHHhhcc-----CCCceEEecCCCCcc--cCc-cceeeee-----
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSMH-----NHTVVEHVSGHMFIE--VPN-GQALFMK----- 188 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~~-----~~~rv~~~~gDff~~--~P~-~d~y~l~----- 188 (214)
..++|+|. |.....+++..+. + +..++.+.. ..++|+++.+|+.+. .+. -|++++.
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg 199 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTG 199 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCC
Confidence 56899996 6656666665432 1 222222211 234799999999863 232 4888873
Q ss_pred -hhc-------cCCChHHH-------HHHHHHhHHhcCCC
Q 042599 189 -WIL-------SDWDDEEC-------LKILKNCCVQCNTG 213 (214)
Q Consensus 189 -~IL-------Hdw~d~~~-------~~IL~~~~~Al~pg 213 (214)
.++ +.|+.++. .+||+++.+.|+||
T Consensus 200 ~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG 239 (315)
T 1ixk_A 200 SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 239 (315)
T ss_dssp TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred cccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 223 34665553 68999999999886
No 254
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=71.31 E-value=3.7 Score=33.57 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=33.2
Q ss_pred CceEEecC-CCCcccC-ccceeeeehhcc--CC-ChHH-HHHHHHHhHHhcCCC
Q 042599 166 TVVEHVSG-HMFIEVP-NGQALFMKWILS--DW-DDEE-CLKILKNCCVQCNTG 213 (214)
Q Consensus 166 ~rv~~~~g-Dff~~~P-~~d~y~l~~ILH--dw-~d~~-~~~IL~~~~~Al~pg 213 (214)
++|+++.+ |+++.-+ +.|+++....+| .| .|.. ...+|+.+.+.|+||
T Consensus 131 ~~v~~~~~~D~~~l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpG 184 (305)
T 2p41_A 131 NLVRLQSGVDVFFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN 184 (305)
T ss_dssp GGEEEECSCCTTTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCeEEEeccccccCCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCC
Confidence 57999999 9986323 359888765443 22 2332 347899999999997
No 255
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=71.11 E-value=0.77 Score=33.69 Aligned_cols=77 Identities=6% Similarity=-0.071 Sum_probs=45.0
Q ss_pred CceEEccC--CccHHHHHHhCCC--c------hHHHHhhcc----C--CCceEEecCCCCcccC---c-cceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR--M------NNLFNQSMH----N--HTVVEHVSGHMFIEVP---N-GQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~--l------~~v~~~~~~----~--~~rv~~~~gDff~~~P---~-~d~y~l~~ILH 192 (214)
..++|+|. |..+..+++. +. + +..++.+.. . .++++++.+|+.+..| . -|++++...+|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~ 111 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 111 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred CeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence 56899996 5555556655 32 1 233333321 1 2579999999987433 3 38888765543
Q ss_pred CCChHHHHHHHHHhH--HhcCCC
Q 042599 193 DWDDEECLKILKNCC--VQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~--~Al~pg 213 (214)
. .....+++.+. +.|+||
T Consensus 112 ~---~~~~~~~~~l~~~~~L~~g 131 (177)
T 2esr_A 112 K---ETIVATIEALAAKNLLSEQ 131 (177)
T ss_dssp H---HHHHHHHHHHHHTTCEEEE
T ss_pred c---chHHHHHHHHHhCCCcCCC
Confidence 2 33344555554 667765
No 256
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=71.04 E-value=1.3 Score=31.16 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=31.7
Q ss_pred HHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 11 IQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 11 ~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
.++.|+..| ||+.+|++...+.+.|+.|...|++...
T Consensus 47 ~rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 47 NRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 355666666 8889999999999999999999999875
No 257
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=70.88 E-value=9.9 Score=29.83 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=46.0
Q ss_pred CceEEccC--CccHHHHHHhC-CC-------c-hHHHHhhc---cCCCceEEecCCCCcc--cC--c--cceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-AR-------M-NNLFNQSM---HNHTVVEHVSGHMFIE--VP--N--GQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-P~-------l-~~v~~~~~---~~~~rv~~~~gDff~~--~P--~--~d~y~l~~ILH 192 (214)
..++|+|. |..+..+.+.- |+ + +..++.+. ...+.|..+.+|--++ .| . .|++|+. +-|
T Consensus 79 ~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d-~~~ 157 (233)
T 4df3_A 79 DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD-VAQ 157 (233)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC-CCC
T ss_pred CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe-ccC
Confidence 56899996 66666665542 43 1 23333332 2345788888887653 22 2 3776643 222
Q ss_pred CCChHHHHHHHHHhHHhcCCC
Q 042599 193 DWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d~~~~~IL~~~~~Al~pg 213 (214)
- ++....++++++.|+||
T Consensus 158 ~---~~~~~~l~~~~r~LKpG 175 (233)
T 4df3_A 158 P---EQAAIVVRNARFFLRDG 175 (233)
T ss_dssp T---THHHHHHHHHHHHEEEE
T ss_pred C---hhHHHHHHHHHHhccCC
Confidence 2 24567899999999986
No 258
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=70.38 E-value=1.5 Score=30.72 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=38.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ .....|.+|+.++.+.
T Consensus 51 la~~l~is~~~vs~~l~~L~~~gli~~~~~~--~d-~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 51 LQERLQIDRAAVTRHLKLLEESGYIIRKRNP--DN-QREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECS--SS-TTCEEEEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEecCCC--CC-CCeeEEEECHHHHHHH
Confidence 8889999999999999999999999876321 11 1123588898888766
No 259
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=69.94 E-value=2.1 Score=28.14 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=32.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR 68 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~ 68 (214)
||+++|++...++|.|..|...|++..... -+-.|..+..+.
T Consensus 36 LAk~LgiSk~aVr~~L~~Le~eG~I~~~~~-------~PP~W~~~~~~~ 77 (82)
T 1oyi_A 36 LTRQLNMEKREVNKALYDLQRSAMVYSSDD-------IPPRWFMTTEAD 77 (82)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHTSSEECSS-------SSCEEESCC---
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEeCCC-------CCCcceeccCcc
Confidence 999999999999999999999999987521 156677665543
No 260
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=69.94 E-value=1.7 Score=31.12 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=36.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+..
T Consensus 63 la~~l~i~~~tvs~~l~~Le~~Glv~r~~~~--~d-~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 63 LAKLSLMEQSRMTRIVDQMDARGLVTRVADA--KD-KRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEECC---------CCCEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeccCC--Cc-CCeeEeEECHHHHHHHH
Confidence 8889999999999999999999999875210 00 01234778888776553
No 261
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=69.83 E-value=7.7 Score=30.93 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=31.6
Q ss_pred CceEEecCCC---Cccc----C-c-cceeeeehhccCCChHHHHHHHHHhHHhcC
Q 042599 166 TVVEHVSGHM---FIEV----P-N-GQALFMKWILSDWDDEECLKILKNCCVQCN 211 (214)
Q Consensus 166 ~rv~~~~gDf---f~~~----P-~-~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~ 211 (214)
++|+++..|+ .+.+ + . -|++++..++|+.+ +...+|+.+.+.|+
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 139 ASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLA 191 (281)
T ss_dssp CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBC
T ss_pred CCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhc
Confidence 3688885554 3323 2 2 39999999998854 46678999999998
No 262
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=69.66 E-value=1.6 Score=34.95 Aligned_cols=29 Identities=21% Similarity=0.028 Sum_probs=26.4
Q ss_pred ceeeeehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 183 QALFMKWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 183 d~y~l~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
|+++..++||.++|-. +.|+++++.|+||
T Consensus 137 D~V~~~~~l~~~~d~~--~~l~~~~r~Lkpg 165 (292)
T 2aot_A 137 DFIHMIQMLYYVKDIP--ATLKFFHSLLGTN 165 (292)
T ss_dssp EEEEEESCGGGCSCHH--HHHHHHHHTEEEE
T ss_pred eEEEEeeeeeecCCHH--HHHHHHHHHcCCC
Confidence 9999999999999864 6799999999987
No 263
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=69.60 E-value=1.7 Score=30.76 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=37.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|+++..... .| ...-.+.+|+.++.+.
T Consensus 51 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~--~D-~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 51 IGEKWSLPKQTVSGVCKTLAGQGLIEWQEGE--QD-RRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEECCCS--SC-GGGSCEEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEeeccCC--CC-CceeeeeEChhHHHHH
Confidence 8899999999999999999999999975321 00 0123578888887765
No 264
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=69.56 E-value=1.5 Score=32.47 Aligned_cols=28 Identities=7% Similarity=0.203 Sum_probs=26.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..++++..|+++|..|...|+++..
T Consensus 50 IA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 50 IAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 9999999999999999999999999876
No 265
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=69.44 E-value=1.5 Score=30.97 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.++++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 57 La~~l~~~~~~vs~~l~~L~~~Glv~r~~~~--~D-~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 57 IALWTKKDTPTVNRIVDVLLRKELIVREIST--ED-RRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CCSCEEEECHHHHHHHH
T ss_pred HHHHHCCCHhhHHHHHHHHHHCCCeeccCCC--cc-CceeeeeECHHHHHHHH
Confidence 8999999999999999999999999976311 00 01234778888776653
No 266
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=68.72 E-value=2.8 Score=31.69 Aligned_cols=79 Identities=8% Similarity=-0.022 Sum_probs=46.3
Q ss_pred CCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc-----CCCceEEecCCCCcccC--c--cceeeeehhccC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH-----NHTVVEHVSGHMFIEVP--N--GQALFMKWILSD 193 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P--~--~d~y~l~~ILHd 193 (214)
...++|+|. |..+..++++.. .+ +..++.+.. ..++|+++.+|+.+..| . -|++++...+|.
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~ 134 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR 134 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCCC
Confidence 357899996 555555555543 22 233333321 12589999999986433 2 399988766562
Q ss_pred CChHHHHHHHHHhHHh--cCCC
Q 042599 194 WDDEECLKILKNCCVQ--CNTG 213 (214)
Q Consensus 194 w~d~~~~~IL~~~~~A--l~pg 213 (214)
.....+|+.+.+. |+||
T Consensus 135 ---~~~~~~l~~l~~~~~L~pg 153 (202)
T 2fpo_A 135 ---GLLEETINLLEDNGWLADE 153 (202)
T ss_dssp ---TTHHHHHHHHHHTTCEEEE
T ss_pred ---CcHHHHHHHHHhcCccCCC
Confidence 2334556666554 7665
No 267
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=68.61 E-value=1.5 Score=31.31 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=37.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPN 73 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 73 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+...
T Consensus 67 la~~l~~s~~tvs~~l~~Le~~glv~r~~~~--~d-~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 67 IGERLYLDSATLTPLLKRLQAAGLVTRTRAA--SD-ERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHHHHGGGG
T ss_pred HHHHhCCCcccHHHHHHHHHHCCCEeecCCc--cc-CCeeEeeECHHHHHHHHH
Confidence 8889999999999999999999999986310 00 012257888888876543
No 268
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=68.41 E-value=5.5 Score=26.86 Aligned_cols=57 Identities=4% Similarity=0.033 Sum_probs=43.3
Q ss_pred HHHHHHHHhCchhHH--cCC-CCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 5 MTMKTAIQLGVLEIM--LPK-NNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 5 ~~L~~a~~lgifd~L--LA~-~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
..|....+.+ ++.+ ||+ ..+++...+.|=++.|...|+++.. + ++ +.+|+.++.+..
T Consensus 20 siL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~~-----~----~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 20 TILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKS-----G----DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEE-----T----TE-EEECHHHHHHHH
T ss_pred HHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeecC-----C----CC-eeeCHhHHHHHH
Confidence 3444455555 5555 999 9999999999999999999999932 1 34 888888876553
No 269
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=68.36 E-value=1.7 Score=31.58 Aligned_cols=43 Identities=12% Similarity=0.316 Sum_probs=33.6
Q ss_pred HHHHHHHHhCch-h-HH----cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 5 MTMKTAIQLGVL-E-IM----LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 5 ~~L~~a~~lgif-d-~L----LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
.+|++.+.+... + .+ ||+..++++..++++|+.|...|+++..
T Consensus 15 yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 15 IAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 355666555442 2 23 9999999999999999999999999875
No 270
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.35 E-value=2 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=36.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 56 la~~l~~s~~~vs~~l~~Le~~glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 56 LANQACILRPSMTGVLARLERDGIVRRWKAP--KD-QRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEEEET--TE-EEEEEEEECHHHHHHH
T ss_pred HHHHHCCCHhHHHHHHHHHHHCCCEEeecCC--CC-CCeeEEEECHHHHHHH
Confidence 8899999999999999999999999876311 00 0012367777776654
No 271
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=68.18 E-value=2.4 Score=31.36 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=49.1
Q ss_pred CCceEEccC--CccHHHHHHhCCC---------ch-HHHHhh-ccCCCceEEe-cCCCCcc---------cCc--cceee
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR---------MN-NLFNQS-MHNHTVVEHV-SGHMFIE---------VPN--GQALF 186 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~---------l~-~v~~~~-~~~~~rv~~~-~gDff~~---------~P~--~d~y~ 186 (214)
...++|+|. |..+..++++.|. .. ..++.. +...++++++ .+|+.+. .|. -|+++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~ 102 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVIL 102 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEE
Confidence 356899996 5556667776553 21 111211 2224678999 9998853 232 38888
Q ss_pred eehhccC---C-ChHH-----HHHHHHHhHHhcCCC
Q 042599 187 MKWILSD---W-DDEE-----CLKILKNCCVQCNTG 213 (214)
Q Consensus 187 l~~ILHd---w-~d~~-----~~~IL~~~~~Al~pg 213 (214)
....+|. | .|.. +..+|+++.+.|+||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 138 (196)
T 2nyu_A 103 SDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG 138 (196)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred eCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC
Confidence 6543332 2 2221 258899999999886
No 272
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.11 E-value=2.4 Score=30.32 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=36.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 64 la~~l~is~~tvs~~l~~Le~~Gli~r~~~~--~d-~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 64 IAEFLSTTKSNVTNVVDSLEKRGLVVREMDP--VD-RRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTSEEEEECT--TT-SSCEEEEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeeCCC--CC-cceeEEEECHHHHHHH
Confidence 8899999999999999999999999886311 10 0122467787777654
No 273
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=68.09 E-value=4.8 Score=32.04 Aligned_cols=73 Identities=5% Similarity=-0.020 Sum_probs=46.3
Q ss_pred CceEEccC--CccHHHHHHhCCCc-------hHHHHhhcc---------CCCceEEecCCCCcccCccceeeeehhccCC
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMH---------NHTVVEHVSGHMFIEVPNGQALFMKWILSDW 194 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~---------~~~rv~~~~gDff~~~P~~d~y~l~~ILHdw 194 (214)
..++|+|| |..+.++++. +.- +.+++.+.. ..+|++++.+|.++-+.+-|++++. -
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-----~ 147 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-----Q 147 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES-----S
T ss_pred CEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC-----C
Confidence 46899997 4445566665 521 344544432 2468999999988644123888764 2
Q ss_pred ChHHHHHHHHHhHHhcCCC
Q 042599 195 DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 195 ~d~~~~~IL~~~~~Al~pg 213 (214)
+|.. ..++++++.|+||
T Consensus 148 ~dp~--~~~~~~~~~L~pg 164 (262)
T 2cmg_A 148 EPDI--HRIDGLKRMLKED 164 (262)
T ss_dssp CCCH--HHHHHHHTTEEEE
T ss_pred CChH--HHHHHHHHhcCCC
Confidence 3332 3889999999886
No 274
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=67.61 E-value=1.7 Score=27.96 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=26.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.|.|+.|...|++...
T Consensus 20 La~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 20 IAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 8899999999999999999999999864
No 275
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=67.59 E-value=1.6 Score=31.50 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=32.8
Q ss_pred HHHHHHHhCchh--HH--cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 6 TMKTAIQLGVLE--IM--LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 6 ~L~~a~~lgifd--~L--LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||++.+.|.... .+ ||+..++++..|++||+.|...|+++..
T Consensus 11 Al~~L~~La~~~~~s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 11 AIHILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 455555543321 34 8999999999999999999999999875
No 276
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=67.46 E-value=5.1 Score=31.49 Aligned_cols=75 Identities=4% Similarity=-0.056 Sum_probs=49.1
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc-----CCCceEEecCCCCcccC-----c-cceeeeehhc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-----N-GQALFMKWIL 191 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~-----~~~rv~~~~gDff~~~P-----~-~d~y~l~~IL 191 (214)
..++|+|. |.....++..+|+. +..++.+.. ..++|+++.+|..+-.+ . -|+++.+.+
T Consensus 82 ~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~- 160 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV- 160 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS-
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc-
Confidence 46899995 77777777777864 222222211 23469999999875221 2 399988754
Q ss_pred cCCChHHHHHHHHHhHHhcCCC
Q 042599 192 SDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 192 Hdw~d~~~~~IL~~~~~Al~pg 213 (214)
.++ ..+++.+.+.|+||
T Consensus 161 ~~~-----~~ll~~~~~~Lkpg 177 (249)
T 3g89_A 161 APL-----CVLSELLLPFLEVG 177 (249)
T ss_dssp CCH-----HHHHHHHGGGEEEE
T ss_pred CCH-----HHHHHHHHHHcCCC
Confidence 232 57888899888876
No 277
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=67.43 E-value=2.5 Score=30.44 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=36.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+|++...+.+.++.|...|+++... +..+.+|+.++.+.
T Consensus 60 la~~l~vs~~tvs~~l~~Le~~Glv~r~~---------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 60 MAARLGVSQPTVAKMLKRLATMGLIEMIP---------WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTCEEEET---------TTEEEECHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHHCCCEEEec---------CCceEEChhHHHHH
Confidence 88899999999999999999999998761 45678888776554
No 278
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=67.37 E-value=2 Score=29.96 Aligned_cols=50 Identities=20% Similarity=0.072 Sum_probs=37.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.++++.|...|+++..... .+ .....+.+|+.++.+..
T Consensus 54 la~~l~~~~~tvs~~l~~L~~~gli~r~~~~--~d-~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 54 LKKVLSVDLGALTRMLDRLVCKGWVERLPNP--ND-KRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECT--TC-SSCEEEEECHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHCCCEEecCCc--cc-CceeEeEEChhHHHHHH
Confidence 8888999999999999999999999986321 10 01224778888776553
No 279
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=67.37 E-value=1.6 Score=31.11 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=36.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 60 la~~l~~~~~~vs~~l~~Le~~Glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 60 LGAALQMKRQYISRILQEVQRAGLIERRTNP--EH-ARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEECCS--SS-TTSCEEEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCeeecCCc--cc-ccceeeEEChhhHHHH
Confidence 8889999999999999999999999986311 00 0122567777776654
No 280
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=67.30 E-value=1.3 Score=32.08 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=34.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ .....+.+|+.++.+.
T Consensus 69 la~~l~is~~tvs~~l~~Le~~glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 69 VSDRTAMDKVAVSRAVARLLERGFIRRETHG--DD-RRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEC------------CCCEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEeeecCC--CC-CCeeEEEECHHHHHHH
Confidence 8889999999999999999999999875210 00 0123467777776654
No 281
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=67.13 E-value=5.7 Score=31.24 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=34.7
Q ss_pred HHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceee
Q 042599 5 MTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTC 46 (214)
Q Consensus 5 ~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~ 46 (214)
.+|.--.++.|...| ||+.+|++...+.+.|+.|...|++..
T Consensus 7 kaL~~~~R~~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHTSHHHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 344444556666666 999999999999999999999999987
No 282
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=66.96 E-value=4.2 Score=26.45 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=32.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+++|++...+.|.|.-|...|++..... .++.|..++....+.
T Consensus 33 LA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~-------~~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 33 LSGKLGTPKKEINRVLYSLAKKGKLQKEAG-------TPPLWKIAVSTQAWN 77 (81)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEESS-------SSCEEEEC-------
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEecCC-------CCCeeEEeCcHHhcc
Confidence 899999999999999999999999987521 157888877765543
No 283
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=66.95 E-value=2.4 Score=30.62 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=37.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.|+++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 73 La~~l~~~~~~vs~~l~~Le~~Glv~r~~~~--~D-rR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 73 LATLGVMEQSTTSRTVDQLVDEGLAARSISD--AD-QRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEECC-----C-CCSCEEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeeCCc--cc-CCeeEeeECHHHHHHHH
Confidence 8999999999999999999999999976311 10 01235778888776653
No 284
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=66.68 E-value=2 Score=33.59 Aligned_cols=61 Identities=7% Similarity=-0.129 Sum_probs=35.9
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhcc------CCCceEEecCC----CCcccCc-----cceeee
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSMH------NHTVVEHVSGH----MFIEVPN-----GQALFM 187 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~~------~~~rv~~~~gD----ff~~~P~-----~d~y~l 187 (214)
..++|+|. |..+..++.+.|.. +..++.+.. ...+|+++.+| +++++|. -|+++.
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~ 146 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMC 146 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEE
T ss_pred CEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEE
Confidence 46899996 55556666665532 233333321 13469999998 4445652 388887
Q ss_pred ehhccC
Q 042599 188 KWILSD 193 (214)
Q Consensus 188 ~~ILHd 193 (214)
.-..|.
T Consensus 147 npp~~~ 152 (254)
T 2h00_A 147 NPPFFA 152 (254)
T ss_dssp CCCCC-
T ss_pred CCCCcc
Confidence 645443
No 285
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=66.29 E-value=1.6 Score=30.77 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=36.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ .....+.+|+.++.+.
T Consensus 53 la~~l~~s~~tvs~~l~~L~~~glv~r~~~~--~d-~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 53 LSVLLGVAKSTVTGLVKRLEADGYLTRTPDP--AD-RRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEET--TE-EEEEEEEECHHHHHHH
T ss_pred HHHHHCCCchhHHHHHHHHHHCCCeeecCCC--CC-CceEEEEECHHHHHHH
Confidence 8889999999999999999999999986311 00 0012467788777654
No 286
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=66.17 E-value=1.7 Score=30.24 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=35.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 49 la~~l~~s~~tvs~~l~~L~~~glv~~~~~~--~d-~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 49 LATFFHVDKGTIARTLRRLEESGFIEREQDP--EN-RRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEET--TE-EEEEEEEECHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeecCC--CC-ceeEEeeECHhHHHHH
Confidence 8889999999999999999999999985311 00 0012367777776654
No 287
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=66.00 E-value=2 Score=31.77 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHHHhCch-hH-H----cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchh
Q 042599 5 MTMKTAIQLGVL-EI-M----LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASV 66 (214)
Q Consensus 5 ~~L~~a~~lgif-d~-L----LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~ 66 (214)
-||++.+.|... +. + ||+..++++..|+++|..|...|+++... + ..|.|.++.-
T Consensus 13 yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r--G-----~~GGy~Lar~ 73 (162)
T 3k69_A 13 VAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV--G-----KNGGYQLDLA 73 (162)
T ss_dssp HHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC--S-----TTCEEECCSC
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec--C-----CCCCeEecCC
Confidence 456666555432 22 3 99999999999999999999999997652 1 1456876553
No 288
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=65.53 E-value=1.5 Score=31.13 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=34.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+++++..+.|+++.|...|+++..... .| .....+.+|+.++.+.
T Consensus 60 la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~--~D-~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 60 ISDILGLDKAAVSRTVKKLEEKKYIEVNGHS--ED-KRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeecCC--CC-cceeEeEECHhHHHHH
Confidence 8889999999999999999999999976311 10 0123467777776655
No 289
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=65.43 E-value=1.7 Score=31.01 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=36.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 57 la~~l~~s~~tvs~~l~~Le~~glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 57 IAERMEVKPSAVTLMADRLEQKNLIARTHNT--KD-RRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEEECS--SC-TTSEEEEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEeecCCC--CC-CceEEEEECHHHHHHH
Confidence 8899999999999999999999999886311 00 0122467777776554
No 290
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=65.33 E-value=2.1 Score=30.89 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=36.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|+++..... .+ .....+.+|+.++.+.
T Consensus 72 la~~l~is~~tvs~~l~~Le~~Gli~r~~~~--~d-~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 72 LGIFAVVEQSTLSRALDGLQADGLVRREVDS--DD-QRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEC----C-CSSEEEEECHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHHCCCEEecCCC--CC-CCeeEEEECHHHHHHH
Confidence 8889999999999999999999999875311 00 0123477787776654
No 291
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=65.23 E-value=2.5 Score=30.60 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=37.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.|+++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 66 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~--~D-rR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 66 LAERSFIKPQSANKILQDLLANGWIEKAPDP--TH-GRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHTTSEEEEECC--SS-SCCEEEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCcCeEecCCC--Cc-CCeeEeEECHhHHHHHH
Confidence 8999999999999999999999999986321 10 01224778888776653
No 292
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=65.23 E-value=1.9 Score=30.53 Aligned_cols=49 Identities=6% Similarity=-0.046 Sum_probs=36.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ .....+.+|+.++.+.
T Consensus 62 la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 62 LSNKMYLACSTTTDLVDRMERNGLVARVRDE--HD-RRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECC--C----CEEEEECHHHHHHH
T ss_pred HHHHHCCCchhHHHHHHHHHHCCCeeecCCC--CC-cceeEeEECHhHHHHH
Confidence 8889999999999999999999999875311 10 0122467787777654
No 293
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=65.05 E-value=1.7 Score=27.94 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=31.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecch
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLAS 65 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~ 65 (214)
||+++|++...+.|.|.-|...|++..... .++.|..++
T Consensus 37 LA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~-------~~~~W~i~~ 75 (77)
T 1qgp_A 37 LSGKLGTPKKEINRVLYSLAKKGKLQKEAG-------TPPLWKIAV 75 (77)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTSEEEECS-------SSCEEEECC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEecCC-------CCCceEecC
Confidence 899999999999999999999999987521 156676654
No 294
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=65.04 E-value=2.3 Score=31.05 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=36.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|++++.... .+ ...-.+.+|+.++.+.
T Consensus 65 La~~l~is~~tvs~~l~~Le~~GlV~r~~~~--~D-rR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 65 LATLLGVQPSATGRMVDRLVGAELIDRLPHP--TS-RRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEEECS--SC-SSCEEEEECHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEeccCC--CC-CCeeEEEECHHHHHHH
Confidence 8899999999999999999999999885321 10 0122367788776654
No 295
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=64.69 E-value=1.5 Score=28.23 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=22.0
Q ss_pred CCChhhHHHHHHHHhcCcceeee
Q 042599 25 KETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 25 ~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
+++...++|.|+.|+..|++.+.
T Consensus 49 ~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 49 EIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCeEEE
Confidence 89999999999999999999986
No 296
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=64.67 E-value=3.1 Score=29.24 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=36.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ .....+.+|+.++.+.
T Consensus 56 la~~l~~s~~tvs~~l~~Le~~glv~r~~~~--~d-~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 56 LANRYFVTQSAITASVDKLEEMGLVVRVRDR--ED-RRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEEECS--SC-TTCEEEEECHHHHHHH
T ss_pred HHHHhCCCchhHHHHHHHHHHCCCEEeecCC--CC-CceEEEEECHHHHHHH
Confidence 8889999999999999999999999876321 00 0122467788776654
No 297
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=64.51 E-value=2.5 Score=28.20 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=29.4
Q ss_pred chhHHcCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 15 VLEIMLPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 15 ifd~LLA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
|...=||++++++...+.++|+.|...|++.+.
T Consensus 37 i~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 37 IWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 554449999999999999999999999999965
No 298
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=64.48 E-value=1.8 Score=29.31 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=36.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...|.|+|..|...|+++.... +++ -+...+|+.++.+.
T Consensus 42 La~~l~l~~stLsR~l~rLe~~GLV~r~~~---~D~--R~~v~LT~~G~~~l 88 (96)
T 2obp_A 42 IAKRAQLPMSVLRRVLTQLQAAGLADVSVE---ADG--RGHASLTQEGAALA 88 (96)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---TTS--CEEEEECHHHHHHH
T ss_pred HHHHhCCchhhHHHHHHHHHHCCCEEeecC---CCC--ceeEEECHHHHHHH
Confidence 889999999999999999999999998632 221 23467787776543
No 299
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=64.45 E-value=1.8 Score=30.56 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=36.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.++++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 56 La~~l~~~~~tvs~~l~~L~~~Glv~r~~~~--~D-~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 56 LGERVFLDSGTLTPLLKKLEKKDYVVRTREE--KD-ERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHHHHTHH
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCeEecCCC--CC-cceeeeeEChHHHHHHH
Confidence 8889999999999999999999999986321 00 01235778888776653
No 300
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=63.85 E-value=20 Score=30.16 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=30.2
Q ss_pred CCceEEecCCCCc-ccC-ccceeee---ehhccCCChHHHHHHHHHhHHhcCCC
Q 042599 165 HTVVEHVSGHMFI-EVP-NGQALFM---KWILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 165 ~~rv~~~~gDff~-~~P-~~d~y~l---~~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.++|+++.+|+.+ .+| +.|+++- ...|..-+ ....+|....+-|+||
T Consensus 131 ~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~--~l~~~l~a~~r~Lkp~ 182 (376)
T 4hc4_A 131 EDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHES--MLSSVLHARTKWLKEG 182 (376)
T ss_dssp TTTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTC--SHHHHHHHHHHHEEEE
T ss_pred CceEEEEeeeeeeecCCccccEEEeecccccccccc--hhhhHHHHHHhhCCCC
Confidence 5789999999986 577 4698864 34443322 3445566566666664
No 301
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=62.90 E-value=2 Score=28.48 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=26.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.|.|+.|...|++...
T Consensus 40 la~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 40 IARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 8889999999999999999999999886
No 302
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=62.77 E-value=2.8 Score=29.43 Aligned_cols=49 Identities=8% Similarity=0.077 Sum_probs=36.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|++...... .+ ...-.+.+|+.++.+.
T Consensus 49 la~~l~~s~~~vs~~l~~Le~~gli~r~~~~--~d-~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 49 IAELIKVDRTTAARAIKRLEEQGFIYRQEDA--SN-KKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECS--SC-TTCEEEEECHHHHHHH
T ss_pred HHHHHCCCHhHHHHHHHHHHHCCCEEeecCC--CC-CceeeeEEChhHHHHH
Confidence 8889999999999999999999999986321 00 0122367788777654
No 303
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=62.62 E-value=1.8 Score=33.55 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=38.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.+.++-|...|+++..+ ...+.+|+.++.+..
T Consensus 26 lA~~l~vs~~tvs~~l~~Le~~GlV~r~~---------~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 26 IAQLMQVSPPAVTEMMKKLLAEELLIKDK---------KAGYLLTDLGLKLVS 69 (214)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEET---------TTEEEECHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHHCCCEEEec---------CCCeEECHHHHHHHH
Confidence 89999999999999999999999999862 467889998887653
No 304
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=62.40 E-value=1.9 Score=32.57 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=44.0
Q ss_pred CCceEEccCCccHH--HHHHhCCCchHHHHh-hccCCCceEEecCCCCccc--------------Cccceeeeeh---hc
Q 042599 132 SVPHTKAQSGMDAF--AAAAKDARMNNLFNQ-SMHNHTVVEHVSGHMFIEV--------------PNGQALFMKW---IL 191 (214)
Q Consensus 132 ~~~~~dvgGG~~~~--~~~~~~P~l~~v~~~-~~~~~~rv~~~~gDff~~~--------------P~~d~y~l~~---IL 191 (214)
...++|+|.|...+ .++++...+- -++. .+...++|+++.+|+.+.. .+.|+++..- +.
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~-gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~ 104 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKII-SIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVS 104 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEE-EEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCC
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEE-EEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCC
Confidence 35689999755544 3333311110 0111 1223468999999998631 1236665421 11
Q ss_pred cCCC------hHHHHHHHHHhHHhcCCC
Q 042599 192 SDWD------DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 192 Hdw~------d~~~~~IL~~~~~Al~pg 213 (214)
-.|. -+.+..+|+.+.+.|+||
T Consensus 105 g~~~~d~~~~~~l~~~~l~~a~~~LkpG 132 (191)
T 3dou_A 105 GIPSRDHAVSYQIGQRVMEIAVRYLRNG 132 (191)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence 1111 133568889999999886
No 305
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=61.15 E-value=2.9 Score=29.76 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=36.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceee--ecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTC--NLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~--~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.++++.|...|+++. .... .+ ...-.+.+|+.++.+..
T Consensus 61 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~--~d-~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 61 LTKRLIITGSSAAANVDGLISLGLVVKLNKTIP--ND-SMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEESCC--C--TT-CTTCEEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCC--CC-CceeEeEECHHHHHHHH
Confidence 888999999999999999999999998 4211 10 01225788888776553
No 306
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.02 E-value=2.9 Score=29.41 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=35.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+|++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 56 la~~l~i~~~~vs~~l~~Le~~glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 56 LAAAERMRSSNLAALLRELERGGLIVRHADP--QD-GRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEEC---------CCEEEECHHHHHHH
T ss_pred HHHHhCCChhhHHHHHHHHHHCCCEeeCCCC--CC-CCceeeEECHHHHHHH
Confidence 8889999999999999999999999876311 00 0122477888777654
No 307
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=60.81 E-value=2.6 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=35.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ .....+.+|+.++.+.
T Consensus 56 la~~l~~~~~tvs~~l~~Le~~Gli~r~~~~--~d-~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 56 LESEFSIKSSTATVLLQRMEIKKLLYRKVSG--KD-SRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECS--SC-TTSEEEEECHHHHTTH
T ss_pred HHHHHCCCcchHHHHHHHHHHCCCEEeeCCC--cC-CCeeeeEECHHHHHHH
Confidence 8888999999999999999999999876311 10 0122466777776554
No 308
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=60.04 E-value=11 Score=30.36 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=42.3
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhc-----cCCCceEEecCCCCc-ccCccceeeeehhccCCChH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM-----HNHTVVEHVSGHMFI-EVPNGQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~-----~~~~rv~~~~gDff~-~~P~~d~y~l~~ILHdw~d~ 197 (214)
...++|+|. |.....++++...+ +..++.+. ...++++++.+|+.+ +.++-|+++. +....|+.+
T Consensus 43 ~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~Vv~-n~py~~~~~ 121 (299)
T 2h1r_A 43 SDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDVCTA-NIPYKISSP 121 (299)
T ss_dssp TCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSEEEE-ECCGGGHHH
T ss_pred cCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCEEEE-cCCcccccH
Confidence 356899996 66666666654332 22232222 123689999999986 3444587664 677778888
Q ss_pred HHHHHHH
Q 042599 198 ECLKILK 204 (214)
Q Consensus 198 ~~~~IL~ 204 (214)
...++|+
T Consensus 122 ~~~~ll~ 128 (299)
T 2h1r_A 122 LIFKLIS 128 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8777774
No 309
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=59.71 E-value=2.8 Score=29.25 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=36.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.++++-|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 53 la~~l~~~~~tvs~~l~~Le~~Gli~r~~~~--~D-~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 53 IAKALQRTGPTVSNLLRNLERKKLIYRYVDA--QD-TRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECC--C---CCEEEEECHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHCCCEeecCCC--CC-CCeeeeEECHHHHHHHH
Confidence 8888999999999999999999999976321 10 01234677887776653
No 310
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=59.67 E-value=8.7 Score=31.68 Aligned_cols=82 Identities=7% Similarity=-0.055 Sum_probs=49.1
Q ss_pred CCceEEccC--CccHHHHHHhC-CCc--------hHHHHhhcc-----CCCceEEecCCCCc-ccCc-c-ceeeeehhcc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKD-ARM--------NNLFNQSMH-----NHTVVEHVSGHMFI-EVPN-G-QALFMKWILS 192 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~-P~l--------~~v~~~~~~-----~~~rv~~~~gDff~-~~P~-~-d~y~l~~ILH 192 (214)
...++|+|. |..+.+++... |+. +..++.+.. ..++|+++.+|+.+ +.|. . |+++.---.+
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg 283 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHG 283 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSC
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCc
Confidence 457999996 66666766654 432 334433322 22389999999997 3332 3 7776622111
Q ss_pred C-CC-----hHHHHHHHHHhHHhcCCC
Q 042599 193 D-WD-----DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 d-w~-----d~~~~~IL~~~~~Al~pg 213 (214)
. +. .+.-..+++.+.+.|+||
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~Lkpg 310 (354)
T 3tma_A 284 LRLGRKEGLFHLYWDFLRGALALLPPG 310 (354)
T ss_dssp C----CHHHHHHHHHHHHHHHHTSCTT
T ss_pred CccCCcccHHHHHHHHHHHHHHhcCCC
Confidence 1 11 122378999999999886
No 311
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=59.43 E-value=1.7 Score=30.69 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=31.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+++++..+.++++.|...|+++..... .| ...-.+.+|+.++.+.
T Consensus 57 La~~l~~~~~tvs~~l~~L~~~Glv~r~~~~--~D-rR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 57 LGRQMCRDKALITRKIRELEGRNLVRRERNP--SD-QRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHC---CHHHHHHHHHHHTTSEEC-------------CCEECHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEeeccCC--CC-CCeeeeEECHHHHHHH
Confidence 8999999999999999999999999986311 00 0012367777776654
No 312
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=58.58 E-value=5.2 Score=30.69 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599 6 TMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR 68 (214)
Q Consensus 6 ~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~ 68 (214)
+|.--.++.|...| ||+.+|++...+.+.|+.|...|+++...... ..|...-.|++|+-..
T Consensus 11 aL~~~~rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~-~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 11 VLGNETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKI-PRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHSHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCB-TTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeecc-CCCCceEEEEEChHHH
Confidence 34444556666666 88999999999999999999999998753210 0111133567666544
No 313
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=58.56 E-value=4.3 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
.++++..|+.+|+-|...|+++...... +.|-....|++|+.++..+.
T Consensus 40 ~~is~gtlY~~L~rLe~~GlI~~~~~~~-~~g~~rk~Y~LT~~G~~~l~ 87 (117)
T 4esf_A 40 TEVVEGTVYTILVRLEKKKLVNIEKKPS-DMGPPRKFYSLNEAGRQELE 87 (117)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEEC------CEEEEEECHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecC-CCCCCceEEEECHHHHHHHH
Confidence 3789999999999999999998753110 00111245899999886553
No 314
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=58.43 E-value=3 Score=31.94 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=36.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.|+++.|...|++++.... .| ...-.+.+|+.++.+..
T Consensus 68 La~~l~i~~stvs~~l~~Le~~GlV~r~~~~--~D-rR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 68 IAKFGVMHVSTAFNFSKKLEERGYLRFSKRL--ND-KRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTSEEEECC---------CEEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEecCC--CC-CceEEEEECHHHHHHHH
Confidence 8999999999999999999999999986311 00 01125778888876653
No 315
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=58.38 E-value=5.9 Score=30.10 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCceEEccCC-ccHH--HHHHh-CCCc------hHHHHhhcc----CCCceEEecCCC--CcccCc--cceeeeehhccC
Q 042599 132 SVPHTKAQSG-MDAF--AAAAK-DARM------NNLFNQSMH----NHTVVEHVSGHM--FIEVPN--GQALFMKWILSD 193 (214)
Q Consensus 132 ~~~~~dvgGG-~~~~--~~~~~-~P~l------~~v~~~~~~----~~~rv~~~~gDf--f~~~P~--~d~y~l~~ILHd 193 (214)
...++|+|.| .+.+ .+++. ...+ +..++.+.. ..-+++++.+|. ++++|. -|+++..-..|.
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~ 135 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYD 135 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC-
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcC
Confidence 3568999977 6554 34444 2222 233333321 122799999996 556664 399987756555
Q ss_pred CChHH-----------------HHHHHHHhHHhcCCC
Q 042599 194 WDDEE-----------------CLKILKNCCVQCNTG 213 (214)
Q Consensus 194 w~d~~-----------------~~~IL~~~~~Al~pg 213 (214)
.++.+ ..++|+++.+.|+||
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 172 (230)
T 3evz_A 136 KPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG 172 (230)
T ss_dssp --------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred CccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence 44422 378999999999886
No 316
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=58.29 E-value=13 Score=28.08 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=45.3
Q ss_pred CceEEccC--CccHHHHHHhC-CC--c------hHHHHhhcc---C-------CCceEEecCCCCcccC-c--cceeeee
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-AR--M------NNLFNQSMH---N-------HTVVEHVSGHMFIEVP-N--GQALFMK 188 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-P~--l------~~v~~~~~~---~-------~~rv~~~~gDff~~~P-~--~d~y~l~ 188 (214)
..++|+|. |..+..+++.. |. + +..++.+.. . .++++++.+|..+..+ . -|+++..
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~ 158 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVG 158 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEEC
Confidence 56899996 55555555542 42 1 223332221 1 3579999999986433 2 3999988
Q ss_pred hhccCCChHHHHHHHHHhHHhcCCC
Q 042599 189 WILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
..+|... +++.+.|+||
T Consensus 159 ~~~~~~~--------~~~~~~Lkpg 175 (226)
T 1i1n_A 159 AAAPVVP--------QALIDQLKPG 175 (226)
T ss_dssp SBBSSCC--------HHHHHTEEEE
T ss_pred CchHHHH--------HHHHHhcCCC
Confidence 8887654 4666677665
No 317
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=58.08 E-value=2.6 Score=32.80 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=37.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.++++-|...|+++.. . ...+.+|+.++.+..
T Consensus 30 La~~l~vs~~tvs~~l~~Le~~GlV~r~-----~----~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 30 IAERLDQSGPTVSQTVSRMERDGLLRVA-----G----DRHLELTEKGRALAI 73 (230)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEC-----T----TSCEEECHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEe-----C----CccEEECHHHHHHHH
Confidence 8889999999999999999999999986 2 457889998877653
No 318
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=57.46 E-value=2 Score=30.61 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=34.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+++++..+.++++.|...|+++..... .| ...-.+.+|+.++.+.
T Consensus 61 La~~l~~~~~~vs~~l~~L~~~Glv~r~~~~--~D-~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 61 IGRHLDLSSNTLTPMLKRLEQSGWVKRERQQ--SD-KRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEEC------------CEEEECSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEeeCCCC--CC-cceeeeeECHHHHHHH
Confidence 8899999999999999999999999976321 00 0122467777776654
No 319
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=57.32 E-value=4.2 Score=29.30 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=37.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.|++.-|...|++++.... .| ...-...+|+.++.+..
T Consensus 52 La~~l~~~~~tvs~~v~~Le~~GlV~R~~~~--~D-rR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 52 LAKAIGIEQPSLVRTLDQLEEKGLITRHTSA--ND-RRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEEECS--SC-TTCEEEEECGGGHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCeEeecCC--CC-CcchhhhcCHHHHHHHH
Confidence 8889999999999999999999999976421 10 01124678888876653
No 320
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=57.16 E-value=1.3 Score=29.30 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=35.4
Q ss_pred cCCCCCCChhh-HHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPII-LDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~-l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++... +.|+++.|...|++...+ .+ .....+.+|+.++.+.
T Consensus 36 La~~l~is~~t~vs~~l~~Le~~Glv~~~~----~d-rR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 36 IVKASGVSEKTFFMGLKDRLIRAGLVKEET----LS-YRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHCCCHHHHHTTHHHHHHHTTSEEEEE----EE-TTEEEEEECHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHHCCCeecCC----CC-CCeEEEEECHhHHHHH
Confidence 89999999999 999999999999999432 10 0123467788776654
No 321
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=56.96 E-value=2.7 Score=27.84 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=26.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.|+|+.|...|++++.
T Consensus 42 la~~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 42 LADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 8889999999999999999999999986
No 322
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=56.86 E-value=3.2 Score=28.92 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=36.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|+++..... .| ...-.+.+|+.++.+.
T Consensus 59 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~--~D-~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 59 IINHLNYKQPQVVKAVKILSQEDYFDKKRNE--HD-ERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS--SS-SCCCEEECCSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEecCCC--CC-CCeeEEEECHHHHHHH
Confidence 8889999999999999999999999885311 11 0123466777776554
No 323
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=56.76 E-value=2.7 Score=29.60 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=33.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .| ...-.+.+|+.++.+.
T Consensus 57 La~~l~~s~~tvs~~l~~L~~~Glv~r~~~~--~d-~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 57 LARRLNVSQAAVTKAIKSLVKEGMLETSKDS--KD-ARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEC-------------CCEECGGGHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCeEeccCC--CC-CceeEEEECHhHHHHH
Confidence 8899999999999999999999999875311 00 0123567777666554
No 324
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.75 E-value=3.9 Score=28.63 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=35.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 58 la~~l~~s~~~vs~~l~~L~~~glv~r~~~~--~d-~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 58 LAQSVGVEGPTLARLLDGLESQGLVRRLAVA--ED-RRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEECCB--TT-BCSCEEEECTTHHHHH
T ss_pred HHHHhCCChhhHHHHHHHHHHCCCeeecCCC--cc-cCeeeeEECHhHHHHH
Confidence 7888999999999999999999999886311 00 0122366777766554
No 325
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=56.71 E-value=11 Score=34.17 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=18.4
Q ss_pred CCceEEecCCCCc-ccC-ccceee
Q 042599 165 HTVVEHVSGHMFI-EVP-NGQALF 186 (214)
Q Consensus 165 ~~rv~~~~gDff~-~~P-~~d~y~ 186 (214)
.++|+.+.||+-+ ..| +.|+++
T Consensus 410 ~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 410 GSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp GGGEEEEESCTTTCCCSSCEEEEE
T ss_pred CCeEEEEeCcceeccCCcccCEEE
Confidence 4789999999997 688 579875
No 326
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=56.65 E-value=2.8 Score=29.53 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=37.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.++++.|...|+++...... | ...-.+.+|+.++.+..
T Consensus 56 la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~--D-~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 56 LANRYFVTQSAITAAVDKLEAKGLVRRIRDSK--D-RRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT--E-EEEEEEEECHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHHCCCEEeccCCC--C-CceEEEEECHHHHHHHH
Confidence 88899999999999999999999999863210 0 00114788888876653
No 327
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=55.50 E-value=9.4 Score=30.26 Aligned_cols=81 Identities=6% Similarity=-0.109 Sum_probs=47.1
Q ss_pred CceEEccC--CccHHHHHHhCCC---c------hHHHHhhcc-----CCCceEEecCCCCcc-c-----Cc-cceeeee-
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSMH-----NHTVVEHVSGHMFIE-V-----PN-GQALFMK- 188 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~~-----~~~rv~~~~gDff~~-~-----P~-~d~y~l~- 188 (214)
..++|+|. |.....+++..+. + +..++.+.. ..++++++.+|+.+. . +. -|++++.
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 56899996 5555556665443 1 122222211 234899999998752 1 22 3888775
Q ss_pred -----hhcc---CCChHHH-------HHHHHHhHHhcCCC
Q 042599 189 -----WILS---DWDDEEC-------LKILKNCCVQCNTG 213 (214)
Q Consensus 189 -----~ILH---dw~d~~~-------~~IL~~~~~Al~pg 213 (214)
.+++ .|+.++. .+||+++.+.|+||
T Consensus 165 Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 204 (274)
T 3ajd_A 165 PCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD 204 (274)
T ss_dssp CCC------------HHHHTGGGTCHHHHHHHHHHHEEEE
T ss_pred CCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3333 2555443 78999999999886
No 328
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=55.44 E-value=16 Score=29.63 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=41.7
Q ss_pred CCceEEccC--CccHHHHHHhCC---------CchHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDA---------RMNNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P---------~l~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~ 197 (214)
...++|+|. |.....++++.. ++-....+.....++++++.+|+.+ +.|. -|+++ .+.-.+++..
T Consensus 51 ~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv-~NlPy~is~p 129 (295)
T 3gru_A 51 DDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVV-ANLPYQISSP 129 (295)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEE-EECCGGGHHH
T ss_pred cCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEE-EeCcccccHH
Confidence 356899996 555555655432 2222222222234689999999997 5664 26554 5555555555
Q ss_pred HHHHHHH
Q 042599 198 ECLKILK 204 (214)
Q Consensus 198 ~~~~IL~ 204 (214)
-..++|+
T Consensus 130 il~~lL~ 136 (295)
T 3gru_A 130 ITFKLIK 136 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 329
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=55.39 E-value=3.3 Score=32.18 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=38.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
+|++++++...+.|.++.|...|+|++.... ....+.+|+.++.+..
T Consensus 33 aA~~L~isq~avSr~I~~LE~~~L~~R~~~~------R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 33 LADMLGISQQSASRIIIDLEKNGYITRTVTK------RGQILNITEKGLDVLY 79 (230)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEEEET------TEEEEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEEEcC------CeEEEEECHHHHHHHH
Confidence 7889999999999999999999999986210 1456888998887653
No 330
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=54.79 E-value=2.8 Score=30.12 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=26.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|+++..+.|.++.|...|++...
T Consensus 23 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 23 IAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 8999999999999999999999999863
No 331
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=54.48 E-value=2.9 Score=32.49 Aligned_cols=44 Identities=5% Similarity=0.110 Sum_probs=38.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.++++-|...|+++..+ ...+.+|+.++.+..
T Consensus 30 la~~l~vs~~tvs~~l~~Le~~GlV~r~~---------~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 30 IAERLEQSGPTVSQTVARMERDGLVVVAS---------DRSLQMTPTGRTLAT 73 (226)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEECT---------TSBEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEeC---------CCCeEECHHHHHHHH
Confidence 89999999999999999999999999861 456889998887653
No 332
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=54.42 E-value=3.5 Score=29.54 Aligned_cols=49 Identities=10% Similarity=0.094 Sum_probs=36.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++-|...|++++.... .| ...-...+|+.++.+.
T Consensus 57 La~~l~~~~~tvs~~v~~Le~~Glv~r~~~~--~D-rR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 57 IGERLMVHPTSVTNTVDRLVRSGLVAKRPNP--ND-GRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-------CEEEEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCEEEeecC--Cc-CceeEEEECHHHHHHH
Confidence 8888999999999999999999999986421 10 0012467888887665
No 333
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=54.36 E-value=18 Score=28.10 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=42.3
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhc---cCCCceEEecCCCCc-ccCc-cceeeeehhccCCChHHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSM---HNHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDEEC 199 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~---~~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~~~ 199 (214)
..++|+|. |.....++++...+ +..++.+. ...++++++.+|+.+ +.|. .+..++.+..++++..-.
T Consensus 32 ~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~vv~nlPy~~~~~~l 111 (244)
T 1qam_A 32 DNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNIPYNISTDII 111 (244)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEECCGGGHHHHH
T ss_pred CEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeEEEEeCCcccCHHHH
Confidence 56899996 55556666654322 22233222 223689999999986 5553 355566666666655444
Q ss_pred HHHH
Q 042599 200 LKIL 203 (214)
Q Consensus 200 ~~IL 203 (214)
.+++
T Consensus 112 ~~~l 115 (244)
T 1qam_A 112 RKIV 115 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 334
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=54.25 E-value=3.5 Score=29.49 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+++|+++..+.|.++.|...|++...
T Consensus 25 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 25 LGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 8999999999999999999999999864
No 335
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=54.16 E-value=2.8 Score=29.75 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=34.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.|+++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 60 La~~l~i~~~tvs~~l~~Le~~Glv~r~~~~--~D-~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 60 VAATMGLDPSQIVGLVDELEERGLVVRTLDP--SD-RRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHTCCHHHHHHHHHHHHTTTSEEC--------------CEECHHHHHHHH
T ss_pred HHHHHCCCHhHHHHHHHHHHHCCCEEeeCCc--cc-cchheeeECHHHHHHHH
Confidence 8888999999999999999999999975311 00 00123678887776653
No 336
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=53.71 E-value=2.5 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=26.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.|.|+.|...|++...
T Consensus 51 la~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 51 LAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 8889999999999999999999999865
No 337
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=53.41 E-value=3.6 Score=29.58 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|+++..+.|.++.|...|++.+.
T Consensus 27 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 27 LATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999764
No 338
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=52.55 E-value=14 Score=25.39 Aligned_cols=48 Identities=10% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 23 NNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 23 ~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
..++++..++++|+-|...|+++...... +.|-....|++|+.++..+
T Consensus 42 ~~~i~~gtly~~L~rLe~~GlI~~~~~~~-~~~~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 42 EMELNEATLYTIFKRLEKDGIISSYWGDE-SQGGRRKYYRLTEIGHENM 89 (116)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEEEEEC-----CCEEEEEECHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHCCCEEEEeecc-CCCCCceEEEECHHHHHHH
Confidence 45899999999999999999998752100 0111134588999887654
No 339
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=52.49 E-value=4.1 Score=29.22 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=36.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.+++++..+.|+++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 70 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~--~D-rR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 70 LSDYLKIDKGTTARAIQKLVDEGYVFRQRDE--KD-RRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECC------CCEEEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEecCC--CC-CCeeEEEECHHHHHHHH
Confidence 8899999999999999999999999976321 10 01224677887776553
No 340
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=52.36 E-value=3.7 Score=29.02 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=29.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+++++..+.++++.|...|+++..... .| ...-.+.+|+.++.+.
T Consensus 63 La~~l~~~~~~vs~~l~~L~~~Glv~r~~~~--~D-rR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 63 LAQFFGRRGASITSMLQGLEKKGYIERRIPE--NN-ARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHC------CHHHHHHHHHHTTSBCCC-----------CCCCBCHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHHCCCEEeeCCC--CC-chhheeeECHHHHHHH
Confidence 8999999999999999999999999876311 00 0112466777776655
No 341
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=52.22 E-value=3.1 Score=29.78 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=35.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 68 la~~l~i~~~tvs~~l~~Le~~Gli~r~~~~--~d-~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 68 LSGALKVTNGNVSGLVNRLIKDGMVVKAMSA--DD-RRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHCSSCCSCHHHHHHHHHHHTSEEEC-----------CEEEECHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCEEeecCC--CC-CCeEEEEEChhHHHHH
Confidence 8889999999999999999999999985310 00 0112367787777654
No 342
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=52.15 E-value=4.1 Score=28.30 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=32.7
Q ss_pred CChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCC
Q 042599 26 ETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPN 73 (214)
Q Consensus 26 ~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 73 (214)
+++..|.+.|+-|...|+++...... +.|-....|++|+.++..+..
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~-~~~~~rk~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVN-EKGQQLTVYHITDAGKKFLCD 91 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC--CCCEEEEEEECHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeec-CCCCCceEEEECHHHHHHHHH
Confidence 67899999999999999998653100 111112469999998865543
No 343
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=51.63 E-value=3.8 Score=26.43 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=26.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|+++..++|-|..|...|++..+
T Consensus 30 Ia~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 30 IADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 8999999999999999999999999987
No 344
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=50.89 E-value=73 Score=26.15 Aligned_cols=83 Identities=5% Similarity=0.003 Sum_probs=59.1
Q ss_pred cCCCceEEccC--CccHHHHHHhCCCc-------hHHHHhhc----c----------------------CCCceEEecCC
Q 042599 130 EGSVPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSM----H----------------------NHTVVEHVSGH 174 (214)
Q Consensus 130 ~g~~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~----~----------------------~~~rv~~~~gD 174 (214)
.+..++|.+|. ...++.+...+|++ |.++..-. . ..+++.+++.|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 35567999996 45677777765643 44443211 0 13689999999
Q ss_pred CCcc-c----------Cc-cceeeeehhccCCChHHHHHHHHHhHHhcCC
Q 042599 175 MFIE-V----------PN-GQALFMKWILSDWDDEECLKILKNCCVQCNT 212 (214)
Q Consensus 175 ff~~-~----------P~-~d~y~l~~ILHdw~d~~~~~IL~~~~~Al~p 212 (214)
+.+. . |. ..+++.--+|+-.+.+++..+|+.+.+..++
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~~ 225 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH 225 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCCC
Confidence 9862 2 12 2688888999999999999999999987654
No 345
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=50.71 E-value=4.4 Score=29.08 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|+++..+.|.++.|...|++...
T Consensus 29 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 29 LADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999864
No 346
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=50.21 E-value=7 Score=31.17 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=30.7
Q ss_pred ceEEe--cCCCCcccC-c-cceeeeehh--ccCCChHH--HHHHHHHhHHhcCCC
Q 042599 167 VVEHV--SGHMFIEVP-N-GQALFMKWI--LSDWDDEE--CLKILKNCCVQCNTG 213 (214)
Q Consensus 167 rv~~~--~gDff~~~P-~-~d~y~l~~I--LHdw~d~~--~~~IL~~~~~Al~pg 213 (214)
+|+++ .+|+++ +| . .|+++.... ..+|..+. ...+|+.+.+.|+||
T Consensus 123 ~v~~~~~~~D~~~-l~~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpG 176 (265)
T 2oxt_A 123 NIVKFKSRVDIHT-LPVERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKN 176 (265)
T ss_dssp GGEEEECSCCTTT-SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEecccCHhH-CCCCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccC
Confidence 68888 999986 34 3 498887543 33433222 335889998999887
No 347
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=50.12 E-value=4.7 Score=29.40 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=35.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|++++.... .| ...-.+.+|+.++.+.
T Consensus 74 La~~l~i~~~tvs~~l~~Le~~GlV~r~~~~--~D-rR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 74 LAKAIGIEQPSLVRTLDQLEDKGLISRQTCA--SD-RRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEC-----------CEEEECGGGHHHH
T ss_pred HHHHHCCCHhhHHHHHHHHHHCCCEEeeCCC--CC-CCeeEEEECHHHHHHH
Confidence 8889999999999999999999999986311 00 0113467787776655
No 348
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=50.09 E-value=4.3 Score=29.47 Aligned_cols=50 Identities=6% Similarity=0.034 Sum_probs=33.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.++++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 68 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~--~D-rR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 68 IADRLISRAPDITRLIDRLDDRGLVLRTRKP--EN-RRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHC---CTHHHHHHHHHHHTTSEEEEEET--TE-EEEEEEEECHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCEeecCCC--CC-CCeeEeEECHHHHHHHH
Confidence 8889999999999999999999999986321 00 00124677877776553
No 349
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=49.22 E-value=4.5 Score=29.45 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+++|+++..+.|.++.|...|++...
T Consensus 30 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 30 LSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 8999999999999999999999999864
No 350
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=48.77 E-value=5.9 Score=29.55 Aligned_cols=50 Identities=6% Similarity=0.127 Sum_probs=37.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
||+.++++...+.|+++.|...|+++..... .| ...-.+.+|+.++.+..
T Consensus 63 La~~l~is~~tvs~~l~~Le~~GlV~r~~~~--~D-rR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 63 IARKMGTSKQNINRLVANLEKNGYVDVIPSP--HD-KRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEEECS--SC-SSCEEEEECHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeccCC--CC-CCeeEEEECHHHHHHHH
Confidence 8889999999999999999999999986321 10 01234678888776653
No 351
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=48.61 E-value=47 Score=28.36 Aligned_cols=81 Identities=6% Similarity=0.059 Sum_probs=50.3
Q ss_pred CceEEccC--CccHHHHHHhCCC---c------hHHHHhhc-----cCCCceEEecCCCCcc---cC-c-cceeee----
Q 042599 133 VPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSM-----HNHTVVEHVSGHMFIE---VP-N-GQALFM---- 187 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~-----~~~~rv~~~~gDff~~---~P-~-~d~y~l---- 187 (214)
..++|+|. |.....+++..++ + +..+..+. ...++|+++.+|+.+. ++ . -|++++
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 340 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPC 340 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCC
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCC
Confidence 46899995 6556666665553 1 12222221 1235799999999863 34 2 388886
Q ss_pred --ehhccCCCh-------HHH-------HHHHHHhHHhcCCC
Q 042599 188 --KWILSDWDD-------EEC-------LKILKNCCVQCNTG 213 (214)
Q Consensus 188 --~~ILHdw~d-------~~~-------~~IL~~~~~Al~pg 213 (214)
..++|..+| ++. .+||+++.+.|+||
T Consensus 341 sg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 341 TSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp CCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345554443 332 68999999999886
No 352
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=48.57 E-value=3.8 Score=31.58 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=36.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+|+.+..+...++.|...|+++.. .+...+|+.++.++
T Consensus 36 LA~~LgvS~~SV~~~lkkL~e~GLV~~~----------~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 36 ISERLELGEGSVRTLLRKLSHLDIIRSK----------QRGHFLTLKGKEIR 77 (200)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEC------------CEEECHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEEe----------CCCeEECHHHHHHH
Confidence 8999999999999999999999999885 46788899887654
No 353
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=48.50 E-value=51 Score=26.20 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=45.1
Q ss_pred ceEEccC--CccHHHHHHhCCCc---------hHHHHhhccCCCceEEecCCCCc-ccCc--cceeeeehhccCCChHHH
Q 042599 134 PHTKAQS--GMDAFAAAAKDARM---------NNLFNQSMHNHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEEC 199 (214)
Q Consensus 134 ~~~dvgG--G~~~~~~~~~~P~l---------~~v~~~~~~~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~~ 199 (214)
.++|+|. |.....++++...+ -....+... ..+++++.+|+++ ++|. ....++.|.-.+.+..-.
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~-~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~iss~il 127 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS-GLPVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLV 127 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT-TSSEEEEESCGGGSCGGGSCTTEEEEEEECSSCCHHHH
T ss_pred eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-CCCEEEEECChhhCChhhccCccEEEecCcccccHHHH
Confidence 8999995 55555666654332 222222222 3689999999986 4553 234567777777777777
Q ss_pred HHHHHH
Q 042599 200 LKILKN 205 (214)
Q Consensus 200 ~~IL~~ 205 (214)
.++|.+
T Consensus 128 ~~ll~~ 133 (271)
T 3fut_A 128 TRLLKT 133 (271)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 777754
No 354
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=48.41 E-value=27 Score=28.39 Aligned_cols=80 Identities=8% Similarity=-0.062 Sum_probs=42.4
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhhc----------cCCCceEEecCCCCcccC---cc-ceeeee
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQSM----------HNHTVVEHVSGHMFIEVP---NG-QALFMK 188 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~~----------~~~~rv~~~~gDff~~~P---~~-d~y~l~ 188 (214)
..++-+|| |..+.++++..|.. +.|++.+. -.++|++.+.+|-++-+- +. |++++-
T Consensus 85 k~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D 164 (294)
T 3o4f_A 85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISD 164 (294)
T ss_dssp CEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEES
T ss_pred CeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEe
Confidence 34667776 55566666654421 44554332 135789999998775322 22 776653
Q ss_pred hhccCCChH---HHHHHHHHhHHhcCCC
Q 042599 189 WILSDWDDE---ECLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d~---~~~~IL~~~~~Al~pg 213 (214)
-- ..+... .....++.|+++|+||
T Consensus 165 ~~-dp~~~~~~L~t~eFy~~~~~~L~p~ 191 (294)
T 3o4f_A 165 CT-DPIGPGESLFTSAFYEGCKRCLNPG 191 (294)
T ss_dssp CC-CCCCTTCCSSCCHHHHHHHHTEEEE
T ss_pred CC-CcCCCchhhcCHHHHHHHHHHhCCC
Confidence 21 111111 1245566667776654
No 355
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=47.77 E-value=7.1 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=26.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.|+++.|...|+++..
T Consensus 47 la~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 47 IMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 8889999999999999999999999986
No 356
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=47.26 E-value=12 Score=25.80 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=33.2
Q ss_pred CCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
.++++..|+++|+-|...|+++...... +.|-....|++|+.++..+.
T Consensus 42 ~~is~gtlY~~L~rLe~~GlI~~~~~~~-~~g~~rk~Y~lT~~G~~~l~ 89 (116)
T 3hhh_A 42 TEIVEGTVYTILLRLEKNQWVIAEKKPS-EKGPMRKFYRLTSSGEAELA 89 (116)
T ss_dssp SSCCHHHHHHHHHHHHHTTSEEEEEEEC-C--CEEEEEEECHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeeec-CCCCCceEEEECHHHHHHHH
Confidence 3689999999999999999998653110 11111235889998876553
No 357
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=47.24 E-value=5.1 Score=29.71 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=26.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+++|+++..+.|.++.|...|++...
T Consensus 37 LA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 37 LSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 8999999999999999999999999753
No 358
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=47.15 E-value=5.3 Score=26.57 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 9 TAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 9 ~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
--.++.|+..| ||+.+|++...+.+-|+.|... ++...
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhhe
Confidence 34556666444 8899999999999999999999 88765
No 359
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=46.87 E-value=9.3 Score=28.01 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=36.2
Q ss_pred cCCCCC-CChhhHHHHHHHHhcCcceeeeccccc--CCCccccceecchhccccCCC
Q 042599 20 LPKNNK-ETPIILDRMLRLLASYSFLTCNLATNI--KDGSAQRLYGLASVSRYFFPN 73 (214)
Q Consensus 20 LA~~~~-~~~~~l~rlLr~L~~~gl~~~~~~~~~--~~g~~~~~y~~t~~s~~l~~~ 73 (214)
|++..+ ++...++|-|+.|+..|++++...... ..|-.-..|.+|+.++.+...
T Consensus 51 L~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 51 LLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 444455 999999999999999999997531000 000012378999998876543
No 360
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=46.15 E-value=5 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.++++...+.|.|+.|...|++.+.
T Consensus 48 La~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 48 LSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 8888999999999999999999999875
No 361
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.11 E-value=11 Score=26.46 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=22.9
Q ss_pred CCCChhhHHHHHHHHhcCcceeeec
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNL 48 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~ 48 (214)
.+++...++|.|+.|+..|++.+..
T Consensus 41 ~~is~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 41 ENIGLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp CCCCHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCCHhhHHHHHHHHHHCCCEEEEE
Confidence 4889999999999999999999873
No 362
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=45.84 E-value=7 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+++.|+.|...|+++..
T Consensus 39 La~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 39 IANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999865
No 363
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=45.53 E-value=8.8 Score=26.41 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=32.4
Q ss_pred CCh-hhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 26 ETP-IILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 26 ~~~-~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
+++ ..|.++|+-|...|+++..... .+|-....|++|+.++.+..
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~--~~~~~r~~Y~LT~~G~~~l~ 91 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDT--TVSPPRKIYRITPQGKLYLR 91 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEEC--SSSSCEEEEEECHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeec--CCCCCceEEEEChHHHHHHH
Confidence 889 9999999999999999875321 01111346899998876543
No 364
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=45.53 E-value=20 Score=24.60 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=33.2
Q ss_pred CCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
.++++..|+++|+-|...|+++...... +.|-....|++|+.++..+.
T Consensus 38 ~~is~gtlY~~L~rLe~~GlI~~~~~~~-~~g~~rk~Y~LT~~G~~~l~ 85 (115)
T 4esb_A 38 TFVSEGSIYPLLLRMQKEKLIEGTLKAS-SLGPKRKYYHITDKGLEQLE 85 (115)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEEEC-TTSCEEEEEEECHHHHHHHH
T ss_pred CCCCcChHHHHHHHHHHCCCeEEEeeec-CCCCCcEEEEECHHHHHHHH
Confidence 3689999999999999999998652110 00111235889998876543
No 365
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=45.33 E-value=4.5 Score=29.11 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+++|+++..+.|.++.|...|++...
T Consensus 28 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 28 LAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 8999999999999999999999999863
No 366
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=44.84 E-value=4.6 Score=33.54 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+++++..++|.|+.|...|+++..
T Consensus 40 La~~l~vs~~Tv~r~l~~Le~~Glv~~~ 67 (345)
T 2o0m_A 40 LSETMGITERVLRTETDVLKQLNLIEPS 67 (345)
T ss_dssp ----------------------------
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999743
No 367
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=44.67 E-value=22 Score=29.15 Aligned_cols=80 Identities=9% Similarity=0.046 Sum_probs=47.8
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----C-CC-ceEEecCCCCcccC-------ccceeeeeh-
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----N-HT-VVEHVSGHMFIEVP-------NGQALFMKW- 189 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~-~~-rv~~~~gDff~~~P-------~~d~y~l~~- 189 (214)
..++|+|. |..+..+++....+ +..++.+.. . .. +++++.+|.++..+ +-|++++--
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP 234 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPP 234 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCC
T ss_pred CcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCc
Confidence 46899997 44455555544432 223332221 1 22 59999999987432 238887721
Q ss_pred --h------ccCCChHHHHHHHHHhHHhcCCC
Q 042599 190 --I------LSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 190 --I------LHdw~d~~~~~IL~~~~~Al~pg 213 (214)
- ++++ .++-.++|+++.+.|+||
T Consensus 235 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~Lkpg 265 (332)
T 2igt_A 235 KFGRGTHGEVWQL-FDHLPLMLDICREILSPK 265 (332)
T ss_dssp SEEECTTCCEEEH-HHHHHHHHHHHHHTBCTT
T ss_pred cccCCchHHHHHH-HHHHHHHHHHHHHhcCcC
Confidence 1 1111 345578999999999987
No 368
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=44.54 E-value=20 Score=29.35 Aligned_cols=75 Identities=9% Similarity=0.055 Sum_probs=45.1
Q ss_pred CCceEEccCCccHHHHHHhCCCc--------hHHHHhhcc-----C-CCceEEecCCCCcccCccceeeeehhccCCChH
Q 042599 132 SVPHTKAQSGMDAFAAAAKDARM--------NNLFNQSMH-----N-HTVVEHVSGHMFIEVPNGQALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvgGG~~~~~~~~~~P~l--------~~v~~~~~~-----~-~~rv~~~~gDff~~~P~~d~y~l~~ILHdw~d~ 197 (214)
...++|+|.|.+.+.+. ..... +..++.+.. . .++++++.+|.++...+-|++++. - ..
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d-----p-P~ 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN-----L-PK 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC-----C-TT
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC-----C-cH
Confidence 45789999766555444 33321 223333221 1 258999999999755334888773 1 12
Q ss_pred HHHHHHHHhHHhcCCC
Q 042599 198 ECLKILKNCCVQCNTG 213 (214)
Q Consensus 198 ~~~~IL~~~~~Al~pg 213 (214)
....+++.+.+.|+||
T Consensus 269 ~~~~~l~~~~~~L~~g 284 (336)
T 2yx1_A 269 FAHKFIDKALDIVEEG 284 (336)
T ss_dssp TGGGGHHHHHHHEEEE
T ss_pred hHHHHHHHHHHHcCCC
Confidence 2347888888888764
No 369
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=44.47 E-value=5 Score=29.77 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=26.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+++|+++..+.|-++.|...|++...
T Consensus 47 LA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 47 ISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 9999999999999999999999999763
No 370
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=44.26 E-value=4 Score=29.36 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=26.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|+++..+.|.++.|...|++...
T Consensus 27 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 27 ISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 8999999999999999999999999863
No 371
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=43.79 E-value=9.1 Score=25.75 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=23.9
Q ss_pred cCCCCC----CChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNK----ETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~----~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
|++.++ ++...+.|+|+-|+..|++++.
T Consensus 55 L~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 55 IYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp HHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 666665 5688999999999999999986
No 372
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=43.61 E-value=7.8 Score=29.37 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 7 MKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 7 L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
+..-.+..|...| ||+.+|+++..+.|.++.|...|++...
T Consensus 17 l~d~~~~~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3344455566666 8999999999999999999999999875
No 373
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=43.54 E-value=16 Score=27.17 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=55.2
Q ss_pred CCceEEcc-C-CccHHHHHHhCCCch-HHHHhhccCCCc-----eEEecCCCCcccCc-----c-ceeeeehhccCCChH
Q 042599 132 SVPHTKAQ-S-GMDAFAAAAKDARMN-NLFNQSMHNHTV-----VEHVSGHMFIEVPN-----G-QALFMKWILSDWDDE 197 (214)
Q Consensus 132 ~~~~~dvg-G-G~~~~~~~~~~P~l~-~v~~~~~~~~~r-----v~~~~gDff~~~P~-----~-d~y~l~~ILHdw~d~ 197 (214)
..++.++| | |.+.-.+.+..|+.. -||+.+.++++. =.++-||+.+.+|. | .+.+...=|---+.+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~ 120 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATASLVHADLGGHNRE 120 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSCHH
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceEEEEeecCCCCcc
Confidence 35688998 6 888888999999986 578887765443 35677888776663 3 566666556666677
Q ss_pred HHHHHHHHhHHhc
Q 042599 198 ECLKILKNCCVQC 210 (214)
Q Consensus 198 ~~~~IL~~~~~Al 210 (214)
+.....+.+.+.+
T Consensus 121 ~d~a~a~~lsplI 133 (174)
T 3iht_A 121 KNDRFARLISPLI 133 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHhhhHHH
Confidence 7776666665544
No 374
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=41.74 E-value=26 Score=27.05 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=40.4
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc---CCCceEEecCCCCc-ccCc-cceeeeehhccCCChHHH
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH---NHTVVEHVSGHMFI-EVPN-GQALFMKWILSDWDDEEC 199 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~---~~~rv~~~~gDff~-~~P~-~d~y~l~~ILHdw~d~~~ 199 (214)
..++|+|. |.....++++...+ +..++.+.. ..++++++.+|+.+ +.|. +...++.+.-.+.++...
T Consensus 31 ~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f~vv~n~Py~~~~~~~ 110 (245)
T 1yub_A 31 DTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQII 110 (245)
T ss_dssp EEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEECCSSSCHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCcEEEEeCCccccHHHH
Confidence 46899995 66666666654221 111111111 23589999999986 4553 444556665555655555
Q ss_pred HHHH
Q 042599 200 LKIL 203 (214)
Q Consensus 200 ~~IL 203 (214)
..++
T Consensus 111 ~~~~ 114 (245)
T 1yub_A 111 KKVV 114 (245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 375
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=41.41 E-value=6.1 Score=23.95 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=24.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTC 46 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~ 46 (214)
.|++.|++.+.+..+||-|...|++.-
T Consensus 31 ~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 31 FSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 778899999999999999999999864
No 376
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.39 E-value=4.7 Score=28.43 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=26.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|+++..+.|.++.|...|++...
T Consensus 24 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 24 IAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 8999999999999999999999999753
No 377
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.07 E-value=35 Score=24.24 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=22.4
Q ss_pred CCCChhhHHHHHHHHhcCcceeee
Q 042599 24 NKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
.+++...++|.|+.|+..|++.+.
T Consensus 52 ~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 52 PNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCChhhHHHHHHHHHHCCCEEEE
Confidence 478999999999999999999987
No 378
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.00 E-value=6.3 Score=28.80 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=26.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+++|+++..+.|-++.|...|++...
T Consensus 23 la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 23 LAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 9999999999999999999999998853
No 379
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=39.89 E-value=23 Score=24.58 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=25.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-++.|...|+++..
T Consensus 41 La~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 41 YASIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp TTTCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 8999999999999999999999999876
No 380
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=39.86 E-value=11 Score=30.22 Aligned_cols=46 Identities=4% Similarity=-0.097 Sum_probs=30.5
Q ss_pred ceEEe--cCCCCcccC-c-cceeeeehh--ccCCC-hHH-HHHHHHHhHHhcCCC
Q 042599 167 VVEHV--SGHMFIEVP-N-GQALFMKWI--LSDWD-DEE-CLKILKNCCVQCNTG 213 (214)
Q Consensus 167 rv~~~--~gDff~~~P-~-~d~y~l~~I--LHdw~-d~~-~~~IL~~~~~Al~pg 213 (214)
+|+++ .+|+.+ +| . -|+++.... ..+|. |.. ..++|+.+.+.|+||
T Consensus 131 ~v~~~~~~~D~~~-l~~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpG 184 (276)
T 2wa2_A 131 NLITFKSKVDVTK-MEPFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYN 184 (276)
T ss_dssp GGEEEECSCCGGG-CCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEEeccCcHhh-CCCCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccC
Confidence 68899 999886 44 3 498887644 22332 222 335889898989886
No 381
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=39.69 E-value=35 Score=28.88 Aligned_cols=81 Identities=9% Similarity=0.008 Sum_probs=48.5
Q ss_pred CceEEccC--CccHHHHHHhCCCc--------hHHHHhh----ccCCCceEEecCCCCcc---cCc--cceeee------
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM--------NNLFNQS----MHNHTVVEHVSGHMFIE---VPN--GQALFM------ 187 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l--------~~v~~~~----~~~~~rv~~~~gDff~~---~P~--~d~y~l------ 187 (214)
..++|+|. |.....+++..|+. +..++.+ ....-+++++.+|+.+. ++. -|++++
T Consensus 248 ~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg 327 (429)
T 1sqg_A 248 EHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSA 327 (429)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCC
T ss_pred CeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCCc
Confidence 46899985 66666677666531 1111111 11122578999999863 342 388876
Q ss_pred ehhccCCC-------hHHH-------HHHHHHhHHhcCCC
Q 042599 188 KWILSDWD-------DEEC-------LKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~ILHdw~-------d~~~-------~~IL~~~~~Al~pg 213 (214)
..++|.-+ .++. .+||+++.+.|+||
T Consensus 328 ~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG 367 (429)
T 1sqg_A 328 TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 367 (429)
T ss_dssp GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred ccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 23444333 3333 58999999999886
No 382
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=39.57 E-value=7.8 Score=24.89 Aligned_cols=28 Identities=4% Similarity=-0.007 Sum_probs=26.1
Q ss_pred cCCCCCC-ChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKE-TPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~-~~~~l~rlLr~L~~~gl~~~~ 47 (214)
+|+.+++ ..++++.++.+|.++|+++..
T Consensus 36 aa~~L~v~~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 36 AADTLAVRQKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp HHHHTTTCCTHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhCCccceehhhHHHHHhHhcceeec
Confidence 7788899 999999999999999999986
No 383
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=39.56 E-value=76 Score=27.47 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=50.2
Q ss_pred CCceEEccC--CccHHHHHHhCCC---c------hHHHHhhcc-----CCCceEEecCCCCcc---cCc-cceeeee---
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR---M------NNLFNQSMH-----NHTVVEHVSGHMFIE---VPN-GQALFMK--- 188 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~---l------~~v~~~~~~-----~~~rv~~~~gDff~~---~P~-~d~y~l~--- 188 (214)
...++|+|. |.....+++..+. + +..++.+.. ..++|+++.+|..+. .+. -|++++-
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 356899995 5555566665432 1 122222111 235799999998752 333 3888761
Q ss_pred ----------hhccCCChHH-------HHHHHHHhHHhcCCC
Q 042599 189 ----------WILSDWDDEE-------CLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ----------~ILHdw~d~~-------~~~IL~~~~~Al~pg 213 (214)
.+...|+.++ -.+||+++.+.|+||
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2344577655 357899999999886
No 384
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=39.40 E-value=6.1 Score=27.97 Aligned_cols=49 Identities=8% Similarity=0.213 Sum_probs=34.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeec--ccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNL--ATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~--~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++.|...|+++... .. .| ...-.+.+|+.++.+.
T Consensus 57 La~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~--~D-~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 57 ITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSN--TD-QRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHTTSEEC--------------CCBEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCC--CC-CCeeEEEECHhHHHHH
Confidence 88899999999999999999999999621 10 10 0122467777776655
No 385
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=38.95 E-value=12 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=31.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVS 67 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s 67 (214)
||+..|+++..+.++|+.|+..|.+.... ++.|-++..-
T Consensus 26 la~~~~~~~~~~~~~l~~l~~~G~l~~i~---------~~~~~~~~~~ 64 (121)
T 2pjp_A 26 LAKETGTDEQAMRLTLRQAAQQGIITAIV---------KDRYYRNDRI 64 (121)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEEE---------TTEEEEHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEEec---------CCceECHHHH
Confidence 67788999999999999999999998872 5666665543
No 386
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=38.90 E-value=18 Score=26.00 Aligned_cols=47 Identities=9% Similarity=0.189 Sum_probs=33.3
Q ss_pred CCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
.++++..|.++|+-|...|+++...... +.+-....|.+|+.++.+.
T Consensus 72 ~~is~gtLy~~L~rLE~~GlI~~~~~~~-~~~~~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 72 YVIKETTLYSAFARLEKNGYIKSYYGEE-TQGKRRTYYRITPEGIKYY 118 (145)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEEE-C--CEEEEEEECHHHHHHH
T ss_pred cCcChhHHHHHHHHHHHCCCEEEEEecc-CCCCCeEEEEECHHHHHHH
Confidence 4799999999999999999998753210 0011134689999887654
No 387
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=38.57 E-value=17 Score=30.61 Aligned_cols=81 Identities=7% Similarity=-0.110 Sum_probs=45.2
Q ss_pred CceEEccC--CccHHHHHHhCCCc-------hHHHHhhccC----------C---CceEEecCCCCccc-----C-c-cc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM-------NNLFNQSMHN----------H---TVVEHVSGHMFIEV-----P-N-GQ 183 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l-------~~v~~~~~~~----------~---~rv~~~~gDff~~~-----P-~-~d 183 (214)
..++++|| |..+.++++..|.- +.+++.+... . +|++++.+|-++-+ + + -|
T Consensus 190 krVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fD 269 (364)
T 2qfm_A 190 KDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFD 269 (364)
T ss_dssp CEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEE
T ss_pred CEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCce
Confidence 45889997 55556666654531 3455544321 1 27999999988633 2 2 28
Q ss_pred eeeeehhc--------cCCChHHHHHHHHHhHHhcCCC
Q 042599 184 ALFMKWIL--------SDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 184 ~y~l~~IL--------Hdw~d~~~~~IL~~~~~Al~pg 213 (214)
++++---- |-+..+--..+++.+.++|+||
T Consensus 270 vII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pg 307 (364)
T 2qfm_A 270 YVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD 307 (364)
T ss_dssp EEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE
T ss_pred EEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCC
Confidence 88775311 1122233344444458888875
No 388
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=36.81 E-value=33 Score=22.91 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=33.0
Q ss_pred CCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
..+++..|..+|+-|...|+++... +.....|+.|+.++..+
T Consensus 40 ~~is~GtlYp~L~rLe~~GlI~~~~------~~~rk~Y~iT~~Gr~~l 81 (99)
T 2co5_A 40 IDISDGVLYPLIDSLIDDKILREEE------APDGKVLFLTEKGMKEF 81 (99)
T ss_dssp CBCCHHHHHHHHHHHHHTTSEEEEC------CTTSCEEEECHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHCCCEEEee------CCCcEEEEECHHHHHHH
Confidence 3689999999999999999998752 11145699999988654
No 389
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.69 E-value=36 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.7
Q ss_pred CCCCChhhHHHHHHHHhcCcceeee
Q 042599 23 NNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 23 ~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
..+++...++|.|..|+..|++.+.
T Consensus 43 ~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 43 GDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3578999999999999999999987
No 390
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.46 E-value=7.9 Score=26.04 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=27.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeec
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNL 48 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~ 48 (214)
|..+++++...+.++|+.|...+++.+.+
T Consensus 59 L~~~tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 59 VRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 88899999999999999999999999874
No 391
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=35.03 E-value=18 Score=24.87 Aligned_cols=28 Identities=18% Similarity=0.012 Sum_probs=26.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
|++++++.-..-+++||.|...|++...
T Consensus 65 lseRlkI~gSLAR~aLreL~~kGlIk~V 92 (108)
T 3u5c_Z 65 LVDRLKIGGSLARIALRHLEKEGIIKPI 92 (108)
T ss_dssp HHHTTCCCTTHHHHHHHHHSSSSSCEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCEEEE
Confidence 8899999999999999999999999887
No 392
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=35.01 E-value=17 Score=31.54 Aligned_cols=80 Identities=8% Similarity=0.009 Sum_probs=50.2
Q ss_pred CceEEccC--CccHHHHHHhCCCc---------hHHHHhhcc-----CCCceEEecCCCCcc---cCc-cceeee-----
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM---------NNLFNQSMH-----NHTVVEHVSGHMFIE---VPN-GQALFM----- 187 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l---------~~v~~~~~~-----~~~rv~~~~gDff~~---~P~-~d~y~l----- 187 (214)
..++|+|. |..+..+++..+.- +..++.+.. ..+ |+++.+|..+. .+. -|++++
T Consensus 103 ~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 103 ERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 56899996 65566666654431 122222211 234 89999998752 233 488885
Q ss_pred --------ehhccCCChHHH-------HHHHHHhHHhcCCC
Q 042599 188 --------KWILSDWDDEEC-------LKILKNCCVQCNTG 213 (214)
Q Consensus 188 --------~~ILHdw~d~~~-------~~IL~~~~~Al~pg 213 (214)
..+...|+.++. .+||+++.+.|+||
T Consensus 182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 222 (464)
T 3m6w_A 182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG 222 (464)
T ss_dssp CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 234455776665 78999999999886
No 393
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=34.27 E-value=17 Score=30.47 Aligned_cols=83 Identities=11% Similarity=0.013 Sum_probs=48.2
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc-----CCC-ceEEecCCCCcccC-------ccceeeee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH-----NHT-VVEHVSGHMFIEVP-------NGQALFMK 188 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~-----~~~-rv~~~~gDff~~~P-------~~d~y~l~ 188 (214)
....++|+|. |..+..++.... .+ +..++.+.. ..+ +++++.+|.++..| +-|++++-
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 3457899996 444445555422 11 233333321 122 89999999986432 23888772
Q ss_pred hhccCCCh-------HHHHHHHHHhHHhcCCC
Q 042599 189 WILSDWDD-------EECLKILKNCCVQCNTG 213 (214)
Q Consensus 189 ~ILHdw~d-------~~~~~IL~~~~~Al~pg 213 (214)
---...+. +....+|+++.+.|+||
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 328 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG 328 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111111 56788999999999886
No 394
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=34.06 E-value=17 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=31.7
Q ss_pred CCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCC
Q 042599 25 KETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPN 73 (214)
Q Consensus 25 ~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~ 73 (214)
+.+....++++|.|.+.|++.++.+ . +..+..+.+|+.++.++.+
T Consensus 64 ~~s~~~w~~lirqLi~~G~L~~~~~---~-~~~~~~L~Lt~~g~~vL~~ 108 (134)
T 3aaf_A 64 DQTESWWKAFSRQLITEGFLVEVSR---Y-NKFMKICALTKKGRNWLHK 108 (134)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEC---S-STTCEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCceeecC---c-CccCceEEECHHHHHHHhC
Confidence 4677889999999999999998621 0 0012248889988865433
No 395
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=33.88 E-value=16 Score=23.53 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=31.1
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLA 64 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t 64 (214)
||+++|++..-+.+.|..|-.-|.+..+. ...|+.+
T Consensus 40 Iae~~GvdKKeVdKaik~LKkEgkI~SPk---------RCyw~~~ 75 (80)
T 2lnb_A 40 LVKECQAPKRELNQVLYRMKKELKVSLTS---------PATWCLG 75 (80)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEEE---------TTEEEES
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCccCCC---------CceeeCC
Confidence 99999999999999999999999988762 5667665
No 396
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=33.15 E-value=25 Score=24.47 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=32.0
Q ss_pred HHHHHhCchhHH-cCCCCCCChhhHHHHHHHHhcCcceee
Q 042599 8 KTAIQLGVLEIM-LPKNNKETPIILDRMLRLLASYSFLTC 46 (214)
Q Consensus 8 ~~a~~lgifd~L-LA~~~~~~~~~l~rlLr~L~~~gl~~~ 46 (214)
..+++-+.++.. |.+.+|.+.+.+.+.+.+|..+|+-.+
T Consensus 26 a~lId~~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~~ 65 (117)
T 3ke2_A 26 AHLMDDARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVE 65 (117)
T ss_dssp HHHHHHSCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEE
T ss_pred HHHHhcCCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEEE
Confidence 344555666555 889999999999999999999999765
No 397
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=32.79 E-value=5.1 Score=29.51 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=35.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.++++.|...|+++..... .+ ...-.+.+|+.++.+.
T Consensus 92 La~~l~is~~tvs~~l~~Le~~GlV~r~~~~--~D-rR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 92 LSALAAISGPSTSNRIVRLLEKGLIERREDE--RD-RRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHCSCCSGGGSSHHHHHHHHTSEECCC----------CCBEECHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCcCEEecCCC--CC-CCeeEEEECHHHHHHH
Confidence 8888999999999999999999999875210 00 0112467787777654
No 398
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=32.29 E-value=17 Score=26.62 Aligned_cols=28 Identities=7% Similarity=0.111 Sum_probs=26.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+....+.|+|+.|...|+++..
T Consensus 145 lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 145 IADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 9999999999999999999999999875
No 399
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=31.88 E-value=16 Score=27.29 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHhCchhHH---------cCCCCC-CChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcccc
Q 042599 11 IQLGVLEIM---------LPKNNK-ETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 11 ~~lgifd~L---------LA~~~~-~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
+++.|...| ||+.++ ++...+.+=|+.|...||++..++.. ..|.....|+.++-+..+
T Consensus 24 ~Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~-~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 24 LRWRITQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQ-VRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEE-ETTEEEEEEEECTTTTTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeec-ccCcceeEEEeccccccC
Confidence 566667666 788875 89999999999999999998653211 111123467777665443
No 400
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=31.72 E-value=43 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=33.7
Q ss_pred CCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCC
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
.++++..|+++|+-|...|+++..... .++-....|++|+.++..+.
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~--~~~~~rk~Y~LT~~Gr~~l~ 94 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDN--GGSKPRKYYRTTDEGLRVLR 94 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEE--CSSCEEEEEEECHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEecc--CCCCCceEEEECHHHHHHHH
Confidence 688999999999999999999865211 11111246889998876543
No 401
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=31.57 E-value=24 Score=28.51 Aligned_cols=47 Identities=6% Similarity=-0.023 Sum_probs=32.3
Q ss_pred CceEE-ecCCCCcc-cCc-cceeeeehhccCCC----------hHHHHHHHHHhHHhcCCC
Q 042599 166 TVVEH-VSGHMFIE-VPN-GQALFMKWILSDWD----------DEECLKILKNCCVQCNTG 213 (214)
Q Consensus 166 ~rv~~-~~gDff~~-~P~-~d~y~l~~ILHdw~----------d~~~~~IL~~~~~Al~pg 213 (214)
++|++ +.+|+.+. .+. -|+++.. ..++|. .+.+..+|+.+++.|+||
T Consensus 105 ~~v~~~i~gD~~~~~~~~~fD~Vvsn-~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG 164 (290)
T 2xyq_A 105 SDADSTLIGDCATVHTANKWDLIISD-MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 164 (290)
T ss_dssp CSSSEEEESCGGGCCCSSCEEEEEEC-CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred CCCEEEEECccccCCccCcccEEEEc-CCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence 57889 99999874 333 4888753 222221 344678999999999986
No 402
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=31.39 E-value=58 Score=30.06 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=59.8
Q ss_pred CcchhhhcchhhHhhHHhhhhhccHHHHHhc--CCCceEEccCCccHH---HH--HH-hC---------C--Cc------
Q 042599 100 TQHSYLCMKDALLEGFINTLNRYYLKNALLE--GSVPHTKAQSGMDAF---AA--AA-KD---------A--RM------ 154 (214)
Q Consensus 100 ~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~~--g~~~~~dvgGG~~~~---~~--~~-~~---------P--~l------ 154 (214)
..||.++.|+-+.+.|..++.. .+.+.... +...++|||.|.+.. .+ .+ .. . .+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~-al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEkn 455 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVG-ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKN 455 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH-HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECC
T ss_pred HHHHHHcCChhhHHHHHHHHHH-HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCC
Confidence 3577788888888887777632 23333322 234578999744432 11 11 11 0 00
Q ss_pred h-HHHH-h---hccCCCceEEecCCCCc-cc------C-ccceeeeehhccCC-ChHHHHHHHHHhHHhcCCC
Q 042599 155 N-NLFN-Q---SMHNHTVVEHVSGHMFI-EV------P-NGQALFMKWILSDW-DDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 155 ~-~v~~-~---~~~~~~rv~~~~gDff~-~~------P-~~d~y~l~~ILHdw-~d~~~~~IL~~~~~Al~pg 213 (214)
+ .++. + .-.-.++|+.+.||+-+ .. | +.|+++= -.|--+ ..|-+...|..+.+-|+||
T Consensus 456 p~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVS-ElmGsfl~nEL~pe~Ld~v~r~Lkp~ 527 (745)
T 3ua3_A 456 PNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVS-ELLGSFGDNELSPECLDGVTGFLKPT 527 (745)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEE-CCCBTTBGGGSHHHHHHTTGGGSCTT
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEE-eccccccchhccHHHHHHHHHhCCCC
Confidence 1 1111 0 01124689999999986 45 5 4788752 222333 3343555666666667765
No 403
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.17 E-value=45 Score=23.30 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=22.4
Q ss_pred CCCChhhHHHHHHHHhcCcceeee
Q 042599 24 NKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
.+++...++|.|+.|+..|++.+.
T Consensus 49 ~~is~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 49 EDVGLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCcEEEE
Confidence 478999999999999999999987
No 404
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=31.00 E-value=15 Score=30.54 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=34.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhcc
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSR 68 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~ 68 (214)
||+.+|++...+++.|+-|...|++...+. .+..|...+...
T Consensus 38 ia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g-------~p~~y~av~p~~ 79 (342)
T 3qph_A 38 ISTKSGIPYNRVYDTISSLKLRGFVTEIEG-------TPKVYAAYSPRI 79 (342)
T ss_dssp CSSSTTSSSCSCCHHHHHHHHHTSEEEECC-------TTCEEEECCHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEcC-------ceeEEEEcCHHH
Confidence 999999999999999999999999987621 166777655443
No 405
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=30.99 E-value=49 Score=23.83 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCCCChhhHHHHHHHHhcCcceeeecccccCC-CccccceecchhccccCC
Q 042599 23 NNKETPIILDRMLRLLASYSFLTCNLATNIKD-GSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 23 ~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~-g~~~~~y~~t~~s~~l~~ 72 (214)
..++++..|+++|+-|...|+++...... +. |-....|++|+.++..+.
T Consensus 73 ~~~is~gtLYp~L~rLE~~GlI~~~~~~~-~~~g~~rk~Y~LT~~Gr~~l~ 122 (148)
T 2zfw_A 73 NYRLSDTVLYTALKFLEDEQIISGYWKKV-EGRGRPRRMYQLAQANDDRSR 122 (148)
T ss_dssp TEECCSHHHHHHHHHHHHTSSEEEECCCC-TTSSCCCCEEEESSSSCSTTH
T ss_pred CCCCChhHHHHHHHHHHHCCCEEEEeecc-CCCCCCcEEEEECHHHHHHHH
Confidence 34689999999999999999998753110 00 111245999998876553
No 406
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=30.83 E-value=43 Score=26.85 Aligned_cols=56 Identities=7% Similarity=-0.094 Sum_probs=32.2
Q ss_pred CceEEccC--CccHHHHHHhCC------Cc-hHHHHhhcc------CCCceEEecCCCCcccCc--cceeeee
Q 042599 133 VPHTKAQS--GMDAFAAAAKDA------RM-NNLFNQSMH------NHTVVEHVSGHMFIEVPN--GQALFMK 188 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P------~l-~~v~~~~~~------~~~rv~~~~gDff~~~P~--~d~y~l~ 188 (214)
..++|+|. |..+..++++-. |+ +..++.+.. ..++|+++.+|.++-.++ .|.++|-
T Consensus 127 ~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~ 199 (278)
T 3k6r_A 127 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence 56899996 555555554422 11 222322221 246899999999874443 5776654
No 407
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=30.61 E-value=56 Score=27.79 Aligned_cols=56 Identities=9% Similarity=-0.080 Sum_probs=34.3
Q ss_pred CCCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCcccCc-cceeee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFIEVPN-GQALFM 187 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P~-~d~y~l 187 (214)
+...++|+|. |..+..+++....+ +..++.+.. ..+ ++++.+|.++..+. -|++++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence 4457899996 55455555554332 233433322 234 99999999986553 588776
No 408
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=30.42 E-value=25 Score=29.96 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=35.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.++++...+.|+++-|...|++++.... +| ...-...+|+.++.+.
T Consensus 426 l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~--~D-~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 426 IAKCSEFKPYYLTKALQKLKDLKLLSKKRSL--QD-ERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHSSCCCHHHHHHHHHHHHTTTTSCCEECC--SS-SSCCEEECCSSHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEeecCCC--CC-CCeEEEEECHHHHHHH
Confidence 8999999999999999999999999886421 10 0112356676665543
No 409
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=30.32 E-value=64 Score=25.09 Aligned_cols=72 Identities=3% Similarity=-0.080 Sum_probs=38.1
Q ss_pred CCceEEccC--CccHHHHHHhC-CCc------hHHHHhhcc-CCCceEEecCCCCc-ccCc--cceeeeehhccCCChHH
Q 042599 132 SVPHTKAQS--GMDAFAAAAKD-ARM------NNLFNQSMH-NHTVVEHVSGHMFI-EVPN--GQALFMKWILSDWDDEE 198 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~-P~l------~~v~~~~~~-~~~rv~~~~gDff~-~~P~--~d~y~l~~ILHdw~d~~ 198 (214)
...++|+|. |.....++++. ..+ +..++.+.. ...+++++.+|+.+ ++|. ++..++.+.-.+-+..-
T Consensus 32 ~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy~i~~~i 111 (249)
T 3ftd_A 32 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKVVGNLPYNVASLI 111 (249)
T ss_dssp TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEEEEECCTTTHHHH
T ss_pred cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEEEEECchhccHHH
Confidence 356899996 44445555551 222 233333322 24579999999986 4553 23444444444433333
Q ss_pred HHHHH
Q 042599 199 CLKIL 203 (214)
Q Consensus 199 ~~~IL 203 (214)
..++|
T Consensus 112 l~~ll 116 (249)
T 3ftd_A 112 IENTV 116 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 410
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=29.95 E-value=12 Score=28.05 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.+|++...+.|.|+.|...|++...
T Consensus 30 ia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 30 IARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 8999999999999999999999999875
No 411
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=29.56 E-value=56 Score=22.22 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=33.7
Q ss_pred CCCCChhhHHHHHHHHhcCcceeeecccccCC-CccccceecchhccccC
Q 042599 23 NNKETPIILDRMLRLLASYSFLTCNLATNIKD-GSAQRLYGLASVSRYFF 71 (214)
Q Consensus 23 ~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~-g~~~~~y~~t~~s~~l~ 71 (214)
..++++..|..+|+-|...|+++...... +. |-....|++|+.++...
T Consensus 51 ~~~is~gtLY~~L~rLe~~GlI~~~~~~~-~~~~~~rk~Y~LT~~G~~~l 99 (115)
T 2dql_A 51 TYRLSDTVLYSAIKFLEDNRAITGYWKKL-EGRGRPRRMYQVSPEWQHQA 99 (115)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEEECC-TTCSSCEEEEEECGGGHHHH
T ss_pred CCCCCcchHHHHHHHHHHCCCEEEEeeec-CCCCCCcEEEEECHHHHHHH
Confidence 34689999999999999999998753110 00 11124699999887654
No 412
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=29.38 E-value=36 Score=21.73 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=26.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+++|++...+.|+|--|...|.+...
T Consensus 35 IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 35 LSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 9999999999999999999999999876
No 413
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=29.01 E-value=22 Score=26.71 Aligned_cols=28 Identities=21% Similarity=0.087 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+.+..+.|+|+.|...|+++..
T Consensus 186 lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 186 LATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 8999999999999999999999999875
No 414
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=29.01 E-value=48 Score=27.53 Aligned_cols=55 Identities=7% Similarity=-0.084 Sum_probs=31.6
Q ss_pred CceEEccC--CccHHHHHHhC-CCchH-H--HHhhc-cCCCceEEecCCCCcccCc--cceeee
Q 042599 133 VPHTKAQS--GMDAFAAAAKD-ARMNN-L--FNQSM-HNHTVVEHVSGHMFIEVPN--GQALFM 187 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~-P~l~~-v--~~~~~-~~~~rv~~~~gDff~~~P~--~d~y~l 187 (214)
..++|+|. |..+..++++. +...- - ++..+ ....+++++.+|+++..+. -|+++.
T Consensus 41 ~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 41 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEE
Confidence 46899996 54455555543 32110 0 11111 1125899999999976553 388877
No 415
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.87 E-value=46 Score=23.63 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.8
Q ss_pred CCCCChhhHHHHHHHHhcCcceeee
Q 042599 23 NNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 23 ~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
..+++...++|.|+.|+..|++.+.
T Consensus 47 ~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 47 ASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp CTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 3578999999999999999999987
No 416
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=28.74 E-value=75 Score=26.25 Aligned_cols=80 Identities=5% Similarity=-0.077 Sum_probs=47.0
Q ss_pred CCCceEEccC--CccHHHHHHhCC--Cc------hHHHHhhcc-----C-CCceEEecCCCCc-ccCc--cceeeeehhc
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA--RM------NNLFNQSMH-----N-HTVVEHVSGHMFI-EVPN--GQALFMKWIL 191 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P--~l------~~v~~~~~~-----~-~~rv~~~~gDff~-~~P~--~d~y~l~~IL 191 (214)
+...++|+|. |..+.+++...+ .+ +..++.+.. . .++|+++.+|+.+ +.|. -|+++.---.
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPY 296 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCC
Confidence 4467999996 666667777666 33 334443322 1 2589999999996 4443 3887773222
Q ss_pred cC------CChHHHHHHHHHhHHhc
Q 042599 192 SD------WDDEECLKILKNCCVQC 210 (214)
Q Consensus 192 Hd------w~d~~~~~IL~~~~~Al 210 (214)
+. .-.+--.++++.+.+.+
T Consensus 297 g~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 297 GLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp C------CCHHHHHHHHHHHHHHHE
T ss_pred CcccCcchhHHHHHHHHHHHHHHHc
Confidence 21 11122256777777665
No 417
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=28.60 E-value=17 Score=26.93 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+++..+.|+|+.|...|+++..
T Consensus 175 lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 175 IANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 8889999999999999999999999875
No 418
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=28.50 E-value=1.5e+02 Score=23.01 Aligned_cols=73 Identities=4% Similarity=0.005 Sum_probs=42.1
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhh---ccCCCceEEecCCCCc-ccCc---c-ceeeeehhccCCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQS---MHNHTVVEHVSGHMFI-EVPN---G-QALFMKWILSDWD 195 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~---~~~~~rv~~~~gDff~-~~P~---~-d~y~l~~ILHdw~ 195 (214)
...++|+|. |.....++++...+ +..++.+ ....++++++.+|+++ ++|. + .. + |+-|.|
T Consensus 30 ~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~---~-vv~NlP 105 (255)
T 3tqs_A 30 TDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPL---R-VVGNLP 105 (255)
T ss_dssp TCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCE---E-EEEECC
T ss_pred cCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCe---E-EEecCC
Confidence 356899995 66667776654322 2222222 2224789999999996 3442 1 12 1 555666
Q ss_pred hHHHHHHHHHhHH
Q 042599 196 DEECLKILKNCCV 208 (214)
Q Consensus 196 d~~~~~IL~~~~~ 208 (214)
=.-...||.++.+
T Consensus 106 Y~is~~il~~ll~ 118 (255)
T 3tqs_A 106 YNISTPLLFHLFS 118 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHh
Confidence 5555566655543
No 419
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=28.39 E-value=15 Score=30.31 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=34.5
Q ss_pred ccHHHHHhcCCCceEEccC--CccHHHHHHhCCCchHHHHhhccC
Q 042599 122 YYLKNALLEGSVPHTKAQS--GMDAFAAAAKDARMNNLFNQSMHN 164 (214)
Q Consensus 122 ~~~~~~~~~g~~~~~dvgG--G~~~~~~~~~~P~l~~v~~~~~~~ 164 (214)
..+.+++++|.+++....| +...|+...++|+....|+++|..
T Consensus 118 ~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~ 162 (353)
T 4a6d_A 118 GHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQE 162 (353)
T ss_dssp TTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHH
Confidence 5678889999888877765 567889999999888888888764
No 420
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=28.17 E-value=33 Score=28.51 Aligned_cols=81 Identities=9% Similarity=-0.072 Sum_probs=46.6
Q ss_pred CceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCcccC-------ccceeeeehhcc
Q 042599 133 VPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-------NGQALFMKWILS 192 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P-------~~d~y~l~~ILH 192 (214)
..++|+|. |..+..++...-.+ +..++.+.. ..+.++++.+|.++..+ +-|++++----.
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~ 290 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAF 290 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred CeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCC
Confidence 46899996 44444555442111 233333321 22349999999986432 238887621111
Q ss_pred CCCh-------HHHHHHHHHhHHhcCCC
Q 042599 193 DWDD-------EECLKILKNCCVQCNTG 213 (214)
Q Consensus 193 dw~d-------~~~~~IL~~~~~Al~pg 213 (214)
..+. +....+|+++.+.|+||
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 318 (382)
T 1wxx_A 291 AKGKKDVERAYRAYKEVNLRAIKLLKEG 318 (382)
T ss_dssp CCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1111 56678999999999886
No 421
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=28.04 E-value=18 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+....+.|+|+.|...|+++..
T Consensus 152 lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 152 LAAAVGSVRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 8888999999999999999999999875
No 422
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=27.90 E-value=24 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-|+.|...|+++..
T Consensus 34 La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 34 LAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 8889999999999999999999999876
No 423
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=27.75 E-value=21 Score=27.05 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=26.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+.+..+.|+|+.|...|+++..
T Consensus 192 lA~~lG~sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 192 LARCLDDTRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHhCCChhHHHHHHHHHHHCCCEEec
Confidence 8888999999999999999999999875
No 424
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=27.31 E-value=49 Score=24.30 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCCCChhhHHHHHHHHhcCcceeeecccccCCCc-cccceecchhcccc
Q 042599 23 NNKETPIILDRMLRLLASYSFLTCNLATNIKDGS-AQRLYGLASVSRYF 70 (214)
Q Consensus 23 ~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~-~~~~y~~t~~s~~l 70 (214)
..+++...+++.|+-|...|+++..... .+|. ....|+.|+.++..
T Consensus 32 ~~~~s~~~ly~~L~~Le~~GlI~~~~~~--~~~~~~r~~Y~lT~~G~~~ 78 (179)
T 1yg2_A 32 FWKASHQQVYRELNKMGEQGLVTCVLEP--QEGKPDRKVYSITQAGRSA 78 (179)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEECCC-----------CEEECHHHHHH
T ss_pred ccCCCcCcHHHHHHHHHHCCCeEEEeec--CCCCCCceEEEeChHHHHH
Confidence 3479999999999999999999875321 1111 13469999998754
No 425
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=27.20 E-value=8.8 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=24.8
Q ss_pred cCCCCC----CChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNK----ETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~----~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+.++ ++...+.|+|+-|...|+++..
T Consensus 30 la~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 30 IIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 676666 7799999999999999999986
No 426
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.01 E-value=52 Score=23.48 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=22.3
Q ss_pred CCCChhhHHHHHHHHhcCcceeee
Q 042599 24 NKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
.+++...++|.|+.|+..|++.+.
T Consensus 48 ~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 48 EEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCcEEEE
Confidence 578999999999999999999986
No 427
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=26.89 E-value=17 Score=24.68 Aligned_cols=28 Identities=7% Similarity=0.208 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-|+.|...|+++..
T Consensus 39 La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 39 ISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 8889999999999999999999999876
No 428
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=26.87 E-value=15 Score=26.59 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=26.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
|++++++.-.+-+++||.|...|++...
T Consensus 69 lseRlkI~gSLARkaLreL~~kGlIk~V 96 (143)
T 2xzm_8 69 VVEKLKVNGSLARQLMRTMADRKLVEKV 96 (143)
T ss_dssp HHHHHCBCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcchHHHHHHHHHHHHHCCCEEEE
Confidence 7888999999999999999999999876
No 429
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=26.82 E-value=14 Score=30.71 Aligned_cols=41 Identities=49% Similarity=0.904 Sum_probs=33.4
Q ss_pred ccHHHHHhcCCCceEEccCCccHHHHHHhCCCchHHHHhhcc
Q 042599 122 YYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163 (214)
Q Consensus 122 ~~~~~~~~~g~~~~~dvgGG~~~~~~~~~~P~l~~v~~~~~~ 163 (214)
..+.+++++|.++|.... |...|++...+|+....|+.+|.
T Consensus 142 ~~L~~~~r~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~ 182 (364)
T 3p9c_A 142 YYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNEGMK 182 (364)
T ss_dssp GGHHHHHHHCSCHHHHHH-SSCHHHHHTTCHHHHHHHHHHHH
T ss_pred hCHHHHHhhCCChHHHhc-CCCHHHHHHhCHHHHHHHHHHHH
Confidence 567888998888887777 78899999999988777776664
No 430
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=26.67 E-value=19 Score=26.57 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+.+..+.|+|+.|...|+++..
T Consensus 169 lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 169 LAALAGTSRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 8889999999999999999999999875
No 431
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=26.65 E-value=15 Score=30.54 Aligned_cols=41 Identities=46% Similarity=0.878 Sum_probs=33.5
Q ss_pred ccHHHHHhcCCCceEEccCCccHHHHHHhCCCchHHHHhhcc
Q 042599 122 YYLKNALLEGSVPHTKAQSGMDAFAAAAKDARMNNLFNQSMH 163 (214)
Q Consensus 122 ~~~~~~~~~g~~~~~dvgGG~~~~~~~~~~P~l~~v~~~~~~ 163 (214)
..+.+++++|.++|.... |...|++..++|+....|+.+|.
T Consensus 144 ~~l~~~~r~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~ 184 (368)
T 3reo_A 144 FYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVFNKGMS 184 (368)
T ss_dssp GGHHHHHHHCSCHHHHHS-SSCHHHHHTTCHHHHHHHHHHHH
T ss_pred hchHHHHhcCCCHHHHHh-CCCHHHHHhhCHHHHHHHHHHHH
Confidence 567888988888887777 68899999999988877777664
No 432
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=26.55 E-value=19 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=26.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+.+..+.|+|+.|...|+++..
T Consensus 181 iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 181 IMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 8999999999999999999999999875
No 433
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=26.50 E-value=20 Score=27.43 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+....+.|+|+.|...|+++..
T Consensus 199 lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 199 IAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 8999999999999999999999999875
No 434
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=26.41 E-value=1.3e+02 Score=23.14 Aligned_cols=76 Identities=7% Similarity=-0.028 Sum_probs=41.3
Q ss_pred CceEEccC--CccHHHHHHh-CCC--c------h----HHHHhhccCCCceEEecCCCCccc-----C-ccceeeeehhc
Q 042599 133 VPHTKAQS--GMDAFAAAAK-DAR--M------N----NLFNQSMHNHTVVEHVSGHMFIEV-----P-NGQALFMKWIL 191 (214)
Q Consensus 133 ~~~~dvgG--G~~~~~~~~~-~P~--l------~----~v~~~~~~~~~rv~~~~gDff~~~-----P-~~d~y~l~~IL 191 (214)
..++|+|. |.....+++. .|+ + + ..++.+.. .++|+++.+|...+. + +.|+++..-.
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a- 155 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLADARFPQSYKSVVENVDVLYVDIA- 155 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEECCTTCGGGTTTTCCCEEEEEECCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEcccccchhhhccccceEEEEecCC-
Confidence 56899996 5544444443 221 1 1 22333332 367999999987542 2 2477765422
Q ss_pred cCCChHHHHHHHHHhHHhcCCC
Q 042599 192 SDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 192 Hdw~d~~~~~IL~~~~~Al~pg 213 (214)
+ .+....+++++...|+||
T Consensus 156 ~---~~~~~il~~~~~~~LkpG 174 (232)
T 3id6_C 156 Q---PDQTDIAIYNAKFFLKVN 174 (232)
T ss_dssp C---TTHHHHHHHHHHHHEEEE
T ss_pred C---hhHHHHHHHHHHHhCCCC
Confidence 1 223333445666688886
No 435
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=26.31 E-value=20 Score=26.69 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+....+.|+|+.|...|+++..
T Consensus 184 lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 184 VAGHLSIQPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTSEEES
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCcEEec
Confidence 8889999999999999999999999875
No 436
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=25.95 E-value=31 Score=28.88 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=38.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccCCCC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFFPNE 74 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~ 74 (214)
+++.+|++....+|.|+.|+..|++++.. .| ....|...++-+.|..+.
T Consensus 317 ~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~-----~g-R~~~y~~~~~~~~l~~~~ 365 (373)
T 2qc0_A 317 LVESGLAKRQTASVYLKQLCDIGVLEEVQ-----SG-KEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHTTSCEEC-------C-CSCEEECHHHHHHHHSSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCcEEEec-----CC-CceEEehHHHHHHHccCC
Confidence 77889999999999999999999999862 12 245688888877776554
No 437
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=25.76 E-value=17 Score=24.36 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-|+.|...|+++..
T Consensus 49 La~~lgVSr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 49 IADRVGITRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 8889999999999999999999999875
No 438
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=25.53 E-value=25 Score=29.44 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=33.5
Q ss_pred HHHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 8 KTAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 8 ~~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
+..-+..|++.| ||+.+|++...+.++++.|...|++.+.
T Consensus 14 r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEee
Confidence 344444566776 9999999999999999999999999985
No 439
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=25.51 E-value=1.4e+02 Score=25.14 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=40.8
Q ss_pred CCceEEccC--CccHHHHHHhCCCc------hHHHHhhcc-----CCCceEEecCCCCcccC-----c--cceeeeehhc
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDARM------NNLFNQSMH-----NHTVVEHVSGHMFIEVP-----N--GQALFMKWIL 191 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~l------~~v~~~~~~-----~~~rv~~~~gDff~~~P-----~--~d~y~l~~IL 191 (214)
...++|+|. |..+..+++....+ +..++.+.. ..++++++.+|+++.++ . -|++++
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~---- 362 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL---- 362 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE----
T ss_pred CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE----
Confidence 356899996 66666666653322 233433322 23589999999987433 2 277765
Q ss_pred cCCChHHHHHHHHHhHH
Q 042599 192 SDWDDEECLKILKNCCV 208 (214)
Q Consensus 192 Hdw~d~~~~~IL~~~~~ 208 (214)
|-|-..+..+++.+.+
T Consensus 363 -dPPr~g~~~~~~~l~~ 378 (433)
T 1uwv_A 363 -DPARAGAAGVMQQIIK 378 (433)
T ss_dssp -CCCTTCCHHHHHHHHH
T ss_pred -CCCCccHHHHHHHHHh
Confidence 4333333345555443
No 440
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.34 E-value=43 Score=26.71 Aligned_cols=77 Identities=10% Similarity=0.031 Sum_probs=45.1
Q ss_pred CCceEEccC--CccHHHHHHhCCC----c------hHHHHhhccC-CCceEEecCCCCc-ccCcc-c-e-eeeehhccCC
Q 042599 132 SVPHTKAQS--GMDAFAAAAKDAR----M------NNLFNQSMHN-HTVVEHVSGHMFI-EVPNG-Q-A-LFMKWILSDW 194 (214)
Q Consensus 132 ~~~~~dvgG--G~~~~~~~~~~P~----l------~~v~~~~~~~-~~rv~~~~gDff~-~~P~~-d-~-y~l~~ILHdw 194 (214)
...++|+|. |.....++++.+. + +..++.+... .++++++.+|+++ ++|.- + - .---.|+.|.
T Consensus 43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIARPGDEPSLRIIGNL 122 (279)
T ss_dssp TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSCSSSSCCEEEEEEC
T ss_pred cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcccccCCceEEEEcc
Confidence 356899995 7777777776554 3 2333332221 4689999999986 34421 1 0 0001356677
Q ss_pred ChHHHHHHHHHhHH
Q 042599 195 DDEECLKILKNCCV 208 (214)
Q Consensus 195 ~d~~~~~IL~~~~~ 208 (214)
|=.-...||.++.+
T Consensus 123 PY~iss~il~~ll~ 136 (279)
T 3uzu_A 123 PYNISSPLLFHLMS 136 (279)
T ss_dssp CHHHHHHHHHHHGG
T ss_pred CccccHHHHHHHHh
Confidence 77777777766553
No 441
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=24.42 E-value=22 Score=28.86 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCccee-ee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLT-CN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~-~~ 47 (214)
||+.+|+++..++|.|..|...|+++ +.
T Consensus 27 la~~l~vS~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 27 IARELGIYRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEEe
Confidence 99999999999999999999999998 65
No 442
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=24.28 E-value=16 Score=26.00 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=31.7
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+++++..+.|+++-|...|++....+ .|+ ..-...+|+.++.+.
T Consensus 58 La~~l~~~~~tvsr~v~~Le~~glVr~~~~---~Dr-R~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 58 LAARIGVERTTLTRNLEVMRRDGLVRVMAG---ADA-RCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSBC---------------CCBCHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCEEeeCC---CCC-CeeEEEECHHHHHHH
Confidence 778899999999999999999999954311 110 112456777776554
No 443
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=24.09 E-value=23 Score=26.47 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+.+..+.|+|+.|...|+++..
T Consensus 183 lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 183 IAQLVGASRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCCEEec
Confidence 8999999999999999999999999875
No 444
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=24.05 E-value=26 Score=27.63 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=36.4
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchhccccC
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASVSRYFF 71 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~ 71 (214)
||+.+++++..+.|+++-|...|++++.... .| ...-...+|+.++.+.
T Consensus 180 La~~l~i~~~tvt~~v~rLe~~GlV~R~~~~--~D-rR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 180 LIETIHHKYPQTVRALNNLKKQGYLIKERST--ED-ERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHTSSEEEECS--SS-TTCEEEECCHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCEEeeCCC--CC-CCeEEEEECHHHHHHH
Confidence 8889999999999999999999999986421 11 0112456777777654
No 445
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=23.70 E-value=56 Score=27.20 Aligned_cols=82 Identities=15% Similarity=0.019 Sum_probs=48.6
Q ss_pred CCCceEEccC--CccHHHHHHhCC-Cc------hHHHHhhcc-----CC-C-ceEEecCCCCcccC-------ccceeee
Q 042599 131 GSVPHTKAQS--GMDAFAAAAKDA-RM------NNLFNQSMH-----NH-T-VVEHVSGHMFIEVP-------NGQALFM 187 (214)
Q Consensus 131 g~~~~~dvgG--G~~~~~~~~~~P-~l------~~v~~~~~~-----~~-~-rv~~~~gDff~~~P-------~~d~y~l 187 (214)
....++|+|. |..+..++.... .+ +..++.+.. .. + +++++.+|.++..+ +-|++++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 3457899996 555555555432 22 233333321 12 3 89999999987433 2388776
Q ss_pred eh--------hccCCChHHHHHHHHHhHHhcCCC
Q 042599 188 KW--------ILSDWDDEECLKILKNCCVQCNTG 213 (214)
Q Consensus 188 ~~--------ILHdw~d~~~~~IL~~~~~Al~pg 213 (214)
.- -+++.. +...+++.++.+.|+||
T Consensus 300 dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~Lkpg 332 (396)
T 3c0k_A 300 DPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEG 332 (396)
T ss_dssp CCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEE
T ss_pred CCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 31 111111 56778999999998876
No 446
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=23.62 E-value=61 Score=24.85 Aligned_cols=14 Identities=14% Similarity=-0.128 Sum_probs=12.8
Q ss_pred HHHHHHhHHhcCCC
Q 042599 200 LKILKNCCVQCNTG 213 (214)
Q Consensus 200 ~~IL~~~~~Al~pg 213 (214)
.++|+.+++.|+||
T Consensus 117 ~~~l~~i~rvLkpg 130 (232)
T 3opn_A 117 DLILPPLYEILEKN 130 (232)
T ss_dssp GGTHHHHHHHSCTT
T ss_pred HHHHHHHHHhccCC
Confidence 67999999999997
No 447
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.53 E-value=24 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+.+..+.|+|+.|...|+++..
T Consensus 183 iA~~lG~sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 183 IGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCCeEeC
Confidence 8999999999999999999999999875
No 448
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=23.51 E-value=27 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=34.3
Q ss_pred HHHHHHhCchhHH----------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 7 MKTAIQLGVLEIM----------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 7 L~~a~~lgifd~L----------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
++..-+..|++.| ||+.+|++...+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 4444455566666 9999999999999999999999999986
No 449
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=23.05 E-value=17 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=25.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTC 46 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~ 46 (214)
||+.+|++...+++-++.|...|+++.
T Consensus 33 La~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 33 LSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp GGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 999999999999999999999999973
No 450
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=22.93 E-value=18 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+....+.|+|+.|...|+++..
T Consensus 170 lA~~lg~sr~tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 170 LSRLFGCARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp ----------------------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCeEEEc
Confidence 9999999999999999999999999764
No 451
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=22.92 E-value=79 Score=26.50 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=35.5
Q ss_pred eEEecCCCCc-ccCcc--ceeeeehhccCCCh------------------------------------HHHHHHHHHhHH
Q 042599 168 VEHVSGHMFI-EVPNG--QALFMKWILSDWDD------------------------------------EECLKILKNCCV 208 (214)
Q Consensus 168 v~~~~gDff~-~~P~~--d~y~l~~ILHdw~d------------------------------------~~~~~IL~~~~~ 208 (214)
+.-++|.|+. .+|.. |+++-...||--++ .+-..+|+..++
T Consensus 134 ~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~ 213 (374)
T 3b5i_A 134 VAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAA 213 (374)
T ss_dssp EEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999995 57854 99999999995441 134557999999
Q ss_pred hcCCC
Q 042599 209 QCNTG 213 (214)
Q Consensus 209 Al~pg 213 (214)
.|+||
T Consensus 214 eL~pG 218 (374)
T 3b5i_A 214 EVKRG 218 (374)
T ss_dssp HEEEE
T ss_pred HhCCC
Confidence 99987
No 452
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=22.89 E-value=24 Score=24.64 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-++.|...|+++..
T Consensus 44 La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 44 FASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 8889999999999999999999999876
No 453
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=22.70 E-value=33 Score=27.01 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=31.8
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeeecccccCCCccccceecchh
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCNLATNIKDGSAQRLYGLASV 66 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~~~~~y~~t~~ 66 (214)
|++.+++++..+..+|+.|+..|.+.+. . ++.|-++..
T Consensus 163 l~~~l~~~~~~~~~~l~~l~~~g~lv~l-----~----~~~~~~~~~ 200 (258)
T 1lva_A 163 VAGSFNLDPSELEELLHYLVREGVLVKI-----N----DEFYWHRQA 200 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEES-----S----SSBEEEHHH
T ss_pred HHhHhCCCHHHHHHHHHHHHHCCCEEEe-----c----CCeEEcHHH
Confidence 7778999999999999999999999987 2 677766554
No 454
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=22.70 E-value=16 Score=30.52 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=31.5
Q ss_pred HHHHHHHHhCchhHH---------cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 5 MTMKTAIQLGVLEIM---------LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 5 ~~L~~a~~lgifd~L---------LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
++++...+..|++.| ||+.+|++...+.++++-|...|++.+.
T Consensus 15 ~~~~~~~~~~il~~l~~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 15 KSVRAENISRILKRIMKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp -------CCCSHHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 344444455566655 8999999999999999999999999986
No 455
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.48 E-value=62 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCChhhHHHHHHHHhcCcceeeec
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNL 48 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~ 48 (214)
.+++...++|.|+.|+..|++.+..
T Consensus 57 ~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 57 KNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 4789999999999999999999873
No 456
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=22.41 E-value=63 Score=24.57 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCChhhHHHHHHHHhcCcceeeecccccCCCc-cccceecchhccc
Q 042599 24 NKETPIILDRMLRLLASYSFLTCNLATNIKDGS-AQRLYGLASVSRY 69 (214)
Q Consensus 24 ~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~g~-~~~~y~~t~~s~~ 69 (214)
.++++..+++.|+-|...|+++..... ++|. ....|+.|+.++.
T Consensus 67 ~~~s~g~lY~~L~rLe~~GlI~~~~~~--~~~~p~rk~Y~iT~~Gr~ 111 (204)
T 3l9f_A 67 YDGTYGMIYPTLRKLEKDGKITKEVVI--QDGRPNKNIYAITESGKK 111 (204)
T ss_dssp EECCTTCHHHHHHHHHHTTSEEEEEEC--CTTSCCEEEEEECHHHHH
T ss_pred cCCCcchHHHHHHHHHHCCCeEEEeec--cCCCCCceEEEEChHHHH
Confidence 368999999999999999999865321 1111 1246999999875
No 457
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.29 E-value=24 Score=24.47 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=26.6
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-++.|+..|+++..
T Consensus 43 La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 43 MGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 8889999999999999999999999876
No 458
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=22.13 E-value=33 Score=25.92 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=26.2
Q ss_pred cCCCCCCCh-hhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETP-IILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~-~~l~rlLr~L~~~gl~~~~ 47 (214)
||..+|+.. ..+.|+|+.|...|+++..
T Consensus 175 lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 175 LGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 899999999 6999999999999999875
No 459
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=21.93 E-value=24 Score=24.50 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=26.5
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-|+.|...|+++..
T Consensus 41 La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 41 TALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 8889999999999999999999999876
No 460
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=21.91 E-value=14 Score=24.50 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=26.3
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceeee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTCN 47 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~~ 47 (214)
||+..|++...+++-|+.|...|+++..
T Consensus 41 La~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 41 IRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 7889999999999999999999999875
No 461
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=21.48 E-value=25 Score=31.43 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=35.2
Q ss_pred cCCCCCCChhhHHHHHHHHhc-----CcceeeecccccCCCccccceecchhcccc
Q 042599 20 LPKNNKETPIILDRMLRLLAS-----YSFLTCNLATNIKDGSAQRLYGLASVSRYF 70 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~-----~gl~~~~~~~~~~~g~~~~~y~~t~~s~~l 70 (214)
||+.+++++..+.+.|+.|.. .|+++.. ++.|.+++-....
T Consensus 450 la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~----------g~~y~L~~~~~~~ 495 (583)
T 3lmm_A 450 VARGLQSGKEAARNALEAARQTTVAGAPLIIAH----------DGVWLLGNACREI 495 (583)
T ss_dssp HHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE----------TTEEEECHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHhhhccccceEEEe----------CCEEEECHHHHHH
Confidence 888899999999999999999 8899986 5789998865543
No 462
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.46 E-value=22 Score=26.47 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=25.9
Q ss_pred cCCCCCCChhhHHHHHHHHhcCcceee
Q 042599 20 LPKNNKETPIILDRMLRLLASYSFLTC 46 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~gl~~~ 46 (214)
||..+|+++..+.|+|+.|...|+++.
T Consensus 173 lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 173 IALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 899999999999999999999999986
No 463
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=20.45 E-value=29 Score=24.65 Aligned_cols=48 Identities=6% Similarity=-0.056 Sum_probs=34.2
Q ss_pred cCCCCCCChhhHHHHHHHHhcC---cceeeecccccCCCccccceecchhccccCC
Q 042599 20 LPKNNKETPIILDRMLRLLASY---SFLTCNLATNIKDGSAQRLYGLASVSRYFFP 72 (214)
Q Consensus 20 LA~~~~~~~~~l~rlLr~L~~~---gl~~~~~~~~~~~g~~~~~y~~t~~s~~l~~ 72 (214)
-|+.++++...+.+.++.|... -+|++.. -|..++.+.+|+.++.|..
T Consensus 44 AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~-----~G~~grg~~LT~~G~~ll~ 94 (135)
T 2ijl_A 44 AGRAMDMSYRRAWLLVDALNHMFRQPVICSQR-----GGKQGGGAALTVFGAELLE 94 (135)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHBSSCSEEECC-----C------EEECHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHCCeeEEecC-----CCCCCCceeECHHHHHHHH
Confidence 4667999999999999999874 7888851 0001257999999988764
No 464
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=20.38 E-value=88 Score=22.09 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCCCChhhHHHHHHHHhcCcceeeecccccCC-CccccceecchhccccC
Q 042599 23 NNKETPIILDRMLRLLASYSFLTCNLATNIKD-GSAQRLYGLASVSRYFF 71 (214)
Q Consensus 23 ~~~~~~~~l~rlLr~L~~~gl~~~~~~~~~~~-g~~~~~y~~t~~s~~l~ 71 (214)
..++++..|+.+|+-|...|+++...... +. |-....|++|+.++...
T Consensus 63 ~~~is~gtLYp~L~rLe~~GlI~~~~~~~-~~~g~~rk~Y~LT~~Gr~~l 111 (138)
T 2e1n_A 63 NYRLSDTVLYTALKFLEDEQIISGYWKKV-EGRGRPRRMYQLAQANDDRS 111 (138)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEEECC-TTCSSCEEEEEESCSCCHHH
T ss_pred CCCCCccHHHHHHHHHHHCCCEEEEeecc-cCCCCCcEEEEECHHHHHHH
Confidence 34689999999999999999998753110 00 11123588888887654
Done!