BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042603
(874 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 208 bits (530), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 211/695 (30%), Positives = 307/695 (44%), Gaps = 96/695 (13%)
Query: 151 GFCELVLLRELYIDNNDLRGSLPL--CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIE 208
GF L L + N L G + L + + L+ L+VS N L S + L S+E
Sbjct: 92 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 209 ELILSNNHFQIP-----ISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG 263
L LS N + + L L +I + + S + +S +
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNN 208
Query: 264 YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPI 323
+ G P FL L + D+S LSG+F + T+LK L +++N G +P
Sbjct: 209 FSTG--IP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGP--IPP 262
Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA---------- 373
L+ L L ++ N F G IP + L L+LS N F G++P F
Sbjct: 263 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 374 ---------------DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
M+ LK LD+S+N+ +G +PE + SL L LS+N G I
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 419 SE--KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
+ L+ L L N F G+IP +LS C L L+LS N+LSG IP LGSL L+
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
D+ + N LEG IP E + L+ L L N + G +PS LS
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 484
Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRL 596
L + LS NRL G IP WI +L L+ + L+NN G IP +L + +
Sbjct: 485 -----NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 597 IDLSHNNLSGHIPPCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFPPNG 644
+DL+ N +G IP + N + Y D + H + L +
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEF----- 593
Query: 645 SPMGKEETVQFTTKN----MSYYYRGRIL------TSMSGIDLSCNKLTGEIPTQIGYLT 694
+ E+ + +T+N S Y G SM +D+S N L+G IP +IG +
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 695 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL 754
+ LNL HN+++G+IP +L+ + LDLS N L G+IP + L L ++ NNL
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 755 SGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCD 789
SG IP+ + QF TF + NP LCG PL + CD
Sbjct: 714 SGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CD 746
Score = 159 bits (401), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 167/544 (30%), Positives = 245/544 (45%), Gaps = 71/544 (13%)
Query: 126 WCLAN-MTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV 184
W L++ L+ L ++ N+++G+ C V L L + +N+ +P L + ++L+
Sbjct: 168 WVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQH 224
Query: 185 LDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETE 244
LD+S N+L+ + S + + T ++ L +S+N F PI PL +L L E
Sbjct: 225 LDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL--------AE 275
Query: 245 SHYNSLTPKF------QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWL 298
+ + P F LT + LSG G P F L + LS N SGE P
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 335
Query: 299 PENNTDLKTLLLANNSLFGSFRMPIHCLQ-KLATLDVSNNFFLGHI-PVEIGTYLPGLMH 356
LK L L+ N G + L L TLD+S+N F G I P L
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILALSNNTLQG 415
L L N F G IP + ++ L SL +S+N L+G IP ++G S L L L N L+G
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEG 453
Query: 416 HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLAL 475
I E + L+ L LD N GEIP LS C L + LS+N L+G+IP+W+G L L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL------------------ 517
+ + NN+ G IP E L LDL+ N GT+P+ +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 518 ---SLGSIEQVHLSKNKIE------GQLESIIHYYPYLVT-------------------- 548
+ G ++ H + N +E QL + P +T
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 549 LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI 608
LD+SYN L G IP I +P L + L +N I G IP ++ L+ + ++DLS N L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 609 PPCL 612
P +
Sbjct: 694 PQAM 697
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 169/567 (29%), Positives = 248/567 (43%), Gaps = 73/567 (12%)
Query: 99 ILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFP-PGFCELVL 157
+L G EL HL I N + + ++ +L+ L+V+SN + P G C
Sbjct: 169 VLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSA-- 221
Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
L+ L I N L G ++ T L++L++S NQ I P + L S++ L L+ N F
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKF 278
Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP-----K 272
I P F T G + Y ++ P F S+ S F
Sbjct: 279 TGEI---PDFLSGACDTLTG-LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATL 332
L L DLS SGE P L + L TL L++N+ G +P C TL
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTL 393
Query: 333 D---VSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT 389
+ NN F G IP + + L+ L+LS N +G+IPSS + L+ L + N L
Sbjct: 394 QELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 390 GAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCY 449
G IP+ + M +LE L L N L G I S N TNL + L N+ GEIP+ + +
Sbjct: 453 GEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP------------------- 490
L L LS+N SG IP LG +L + + N G IP
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 491 -----NEFCQLDC----------------LKVLDLSN-----NSIFG--TLPSCLSLGSI 522
N+ + +C L L N + ++G T P+ + GS+
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 523 EQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG 582
+ +S N + G + I PYL L+L +N + GSIP+ + L L+ + L++N ++G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 583 EIPVQLCQLKEVRLIDLSHNNLSGHIP 609
IP + L + IDLS+NNLSG IP
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 157/343 (45%), Gaps = 25/343 (7%)
Query: 110 LQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR 169
LQELY+++N + L+N + L L+++ N L+G P L LR+L + N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 170 GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF--QIPISLEPLF 227
G +P L + +L L + +N LT I S L + T++ + LSNN +IP + L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 228 NLSKLK----TFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNA 283
NL+ LK +F+G I AE L L + L+ GT P ++ Q A
Sbjct: 512 NLAILKLSNNSFSGNIPAE-------LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLAT---LDVSNNFFL 340
+ ++G+ ++ N +K +L + L +L+T ++++ +
Sbjct: 565 NF----IAGK--RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 341 GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGC 400
GH +M L++S N +G IP M L L++ +N ++G+IP+ +
Sbjct: 619 GHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DL 676
Query: 401 FSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE 443
L IL LS+N L G I LT L + L N G IPE
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 144/333 (43%), Gaps = 58/333 (17%)
Query: 504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY-----------------YPYL 546
LSN+ I G++ S+ + LS+N + G + ++ +P
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 547 VT----------LDLSYNRLHGS-IPNWI--DKLPQLSYILLANNYIEGEIPVQLCQLKE 593
V+ LDLS N + G+ + W+ D +L ++ ++ N I G++ V C
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--N 198
Query: 594 VRLIDLSHNNLSGHIP---PC-------LVNTALSEGYYDAVAPTWDH-----ASAPALS 638
+ +D+S NN S IP C + LS + A++ + +S +
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 639 YFPPNGSPMGKEETVQFT----TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLT 694
PP P+ + + T + + G T ++G+DLS N G +P G +
Sbjct: 259 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCS 315
Query: 695 RIRALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRVAYN 752
+ +L LS NN +G +P T ++ ++ LDLS+N G++P L L+ +L ++ N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 753 NLSGKIPDRVAQ--FSTFEEDSYEGNPFLCGLP 783
N SG I + Q +T +E + N F +P
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 211/695 (30%), Positives = 307/695 (44%), Gaps = 96/695 (13%)
Query: 151 GFCELVLLRELYIDNNDLRGSLPL--CLANLTSLRVLDVSYNQLTENISSSPLMHLTSIE 208
GF L L + N L G + L + + L+ L+VS N L S + L S+E
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 209 ELILSNNHFQIP-----ISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG 263
L LS N + + L L +I + + S + +S +
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNN 211
Query: 264 YGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPI 323
+ G P FL L + D+S LSG+F + T+LK L +++N G +P
Sbjct: 212 FSTG--IP-FLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGP--IPP 265
Query: 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA---------- 373
L+ L L ++ N F G IP + L L+LS N F G++P F
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 374 ---------------DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
M+ LK LD+S+N+ +G +PE + SL L LS+N G I
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 419 SE--KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQ 476
+ L+ L L N F G+IP +LS C L L+LS N+LSG IP LGSL L+
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL 536
D+ + N LEG IP E + L+ L L N + G +PS LS
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 487
Query: 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRL 596
L + LS NRL G IP WI +L L+ + L+NN G IP +L + +
Sbjct: 488 -----NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 597 IDLSHNNLSGHIPPCL--------VNTALSEGYY----DAVAPTWDHASAPALSYFPPNG 644
+DL+ N +G IP + N + Y D + H + L +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEF----- 596
Query: 645 SPMGKEETVQFTTKN----MSYYYRGRIL------TSMSGIDLSCNKLTGEIPTQIGYLT 694
+ E+ + +T+N S Y G SM +D+S N L+G IP +IG +
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 695 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL 754
+ LNL HN+++G+IP +L+ + LDLS N L G+IP + L L ++ NNL
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 755 SGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCD 789
SG IP+ + QF TF + NP LCG PL + CD
Sbjct: 717 SGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR-CD 749
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 167/544 (30%), Positives = 245/544 (45%), Gaps = 71/544 (13%)
Query: 126 WCLAN-MTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV 184
W L++ L+ L ++ N+++G+ C V L L + +N+ +P L + ++L+
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQH 227
Query: 185 LDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETE 244
LD+S N+L+ + S + + T ++ L +S+N F PI PL +L L E
Sbjct: 228 LDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL--------AE 278
Query: 245 SHYNSLTPKF------QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWL 298
+ + P F LT + LSG G P F L + LS N SGE P
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 299 PENNTDLKTLLLANNSLFGSFRMPIHCLQ-KLATLDVSNNFFLGHI-PVEIGTYLPGLMH 356
LK L L+ N G + L L TLD+S+N F G I P L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILALSNNTLQG 415
L L N F G IP + ++ L SL +S+N L+G IP ++G S L L L N L+G
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEG 456
Query: 416 HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLAL 475
I E + L+ L LD N GEIP LS C L + LS+N L+G+IP+W+G L L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL------------------ 517
+ + NN+ G IP E L LDL+ N GT+P+ +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 518 ---SLGSIEQVHLSKNKIE------GQLESIIHYYPYLVT-------------------- 548
+ G ++ H + N +E QL + P +T
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 549 LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI 608
LD+SYN L G IP I +P L + L +N I G IP ++ L+ + ++DLS N L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 609 PPCL 612
P +
Sbjct: 697 PQAM 700
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 169/567 (29%), Positives = 248/567 (43%), Gaps = 73/567 (12%)
Query: 99 ILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFP-PGFCELVL 157
+L G EL HL I N + + ++ +L+ L+V+SN + P G C
Sbjct: 172 VLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSA-- 224
Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
L+ L I N L G ++ T L++L++S NQ I P + L S++ L L+ N F
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKF 281
Query: 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP-----K 272
I P F T G + Y ++ P F S+ S F
Sbjct: 282 TGEI---PDFLSGACDTLTG-LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATL 332
L L DLS SGE P L + L TL L++N+ G +P C TL
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTL 396
Query: 333 D---VSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT 389
+ NN F G IP + + L+ L+LS N +G+IPSS + L+ L + N L
Sbjct: 397 QELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 390 GAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCY 449
G IP+ + M +LE L L N L G I S N TNL + L N+ GEIP+ + +
Sbjct: 456 GEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP------------------- 490
L L LS+N SG IP LG +L + + N G IP
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 491 -----NEFCQLDC----------------LKVLDLSN-----NSIFG--TLPSCLSLGSI 522
N+ + +C L L N + ++G T P+ + GS+
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 523 EQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEG 582
+ +S N + G + I PYL L+L +N + GSIP+ + L L+ + L++N ++G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 583 EIPVQLCQLKEVRLIDLSHNNLSGHIP 609
IP + L + IDLS+NNLSG IP
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 157/343 (45%), Gaps = 25/343 (7%)
Query: 110 LQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR 169
LQELY+++N + L+N + L L+++ N L+G P L LR+L + N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 170 GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF--QIPISLEPLF 227
G +P L + +L L + +N LT I S L + T++ + LSNN +IP + L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 228 NLSKLK----TFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNA 283
NL+ LK +F+G I AE L L + L+ GT P ++ Q A
Sbjct: 515 NLAILKLSNNSFSGNIPAE-------LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLAT---LDVSNNFFL 340
+ ++G+ ++ N +K +L + L +L+T ++++ +
Sbjct: 568 NF----IAGK--RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 341 GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGC 400
GH +M L++S N +G IP M L L++ +N ++G+IP+ +
Sbjct: 622 GHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DL 679
Query: 401 FSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE 443
L IL LS+N L G I LT L + L N G IPE
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 144/333 (43%), Gaps = 58/333 (17%)
Query: 504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHY-----------------YPYL 546
LSN+ I G++ S+ + LS+N + G + ++ +P
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 547 VT----------LDLSYNRLHGS-IPNWI--DKLPQLSYILLANNYIEGEIPVQLCQLKE 593
V+ LDLS N + G+ + W+ D +L ++ ++ N I G++ V C
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--N 201
Query: 594 VRLIDLSHNNLSGHIP---PC-------LVNTALSEGYYDAVAPTWD-----HASAPALS 638
+ +D+S NN S IP C + LS + A++ + +S +
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 639 YFPPNGSPMGKEETVQFT----TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLT 694
PP P+ + + T + + G T ++G+DLS N G +P G +
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCS 318
Query: 695 RIRALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRVAYN 752
+ +L LS NN +G +P T ++ ++ LDLS+N G++P L L+ +L ++ N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 753 NLSGKIPDRVAQ--FSTFEEDSYEGNPFLCGLP 783
N SG I + Q +T +E + N F +P
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 19/231 (8%)
Query: 488 PIPNEFCQLDCLKVLDLSN-NSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPY 545
PIP+ L L L + N++ G +P ++ L + ++++ + G + +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 546 LVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV-RLIDLSHNNL 604
LVTLD SYN L G++P I LP L I N I G IP ++ + +S N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ--FTTKNMSY 662
+G IPP N L+ + ++ A L G ++ Q KN
Sbjct: 187 TGKIPPTFANLNLA---FVDLSRNMLEGDASVL---------FGSDKNTQKIHLAKNSLA 234
Query: 663 YYRGRILTS--MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 711
+ G++ S ++G+DL N++ G +P + L + +LN+S NNL G IP
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 25/258 (9%)
Query: 536 LESIIHYYPYLVTLDLS-YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV 594
+ S + PYL L + N L G IP I KL QL Y+ + + + G IP L Q+K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 595 RLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ 654
+D S+N LSG +PP + + V T+D P + K T
Sbjct: 128 VTLDFSYNALSGTLPPSI------SSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSM 179
Query: 655 FTTKNMSYYYRGRILTSMSG-----IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT-- 707
++N G+I + + +DLS N L G+ G + ++L+ N+L
Sbjct: 180 TISRNR---LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 708 -GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS 766
G + + K + LDL N ++G +P L L L V++NNL G+IP +
Sbjct: 237 LGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291
Query: 767 TFEEDSYEGNPFLCGLPL 784
F+ +Y N LCG PL
Sbjct: 292 RFDVSAYANNKCLCGSPL 309
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 10/252 (3%)
Query: 344 PVEIGTYLPGLMHLNL----SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
P I + L L +LN N G IP + A + L L I++ ++GAIP+ ++
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ- 123
Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLSD 458
+L L S N L G + +L NL + DGN+ G IP+S S L + +S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 459 NHLSGKIPRWLGSL-LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
N L+GKIP +L LA D + N LEG F + + L+ NS+ L
Sbjct: 184 NRLTGKIPPTFANLNLAFVD--LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 518 SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577
++ + L N+I G L + +L +L++S+N L G IP L + AN
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300
Query: 578 NYIEGEIPVQLC 589
N P+ C
Sbjct: 301 NKCLCGSPLPAC 312
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 103/244 (42%), Gaps = 28/244 (11%)
Query: 368 IPSSFADMKMLKSLDIS-YNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTN 426
IPSS A++ L L I N L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486
L L + G IP+ LS+ L L S N LSG +P + SL L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 487 GPIPNEFCQLDCL-KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPY 545
G IP+ + L + +S N + G +P + ++ V LS+N +EG +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 546 LVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
+ L+ N L + + L+ + L NN I G +P L QLK + +++S NNL
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 606 GHIP 609
G IP
Sbjct: 282 GEIP 285
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%)
Query: 268 GTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQ 327
G P + L+ ++H N+SG P++L + T L TL + N+L G+ I L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLP 149
Query: 328 KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 387
L + N G IP G++ + +SRN G IP +FA++ L +D+S N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 388 LTGAIPERMAMGCFSLEILALSNNTLQ---GHIFSEKFNLTNLKRLQLDGNKFIGEIPES 444
L G + +I L+ N+L G + K NL L L N+ G +P+
Sbjct: 209 LEGDASVLFGSDKNTQKI-HLAKNSLAFDLGKVGLSK----NLNGLDLRNNRIYGTLPQG 263
Query: 445 LSKCYLLGGLYLSDNHLSGKIPR 467
L++ L L +S N+L G+IP+
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 42/274 (15%)
Query: 276 HQHDLNNADLSHLNLSGEFP-----NWLPENN---------------------TDLKTLL 309
+ +NN DLS LNL +P LP N T L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 310 LANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIP 369
+ + ++ G+ + ++ L TLD S N G +P I + LP L+ + N +G+IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIP 166
Query: 370 SSFADM-KMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLK 428
S+ K+ S+ IS N+LTG IP A +L + LS N L+G + N +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 429 RLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG 487
++ L N ++ + LSK L GL L +N + G +P+ L L L + + NNL G
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 488 PIPNEFCQLDCLKVLDLS----NNSIFGT-LPSC 516
IP Q L+ D+S N + G+ LP+C
Sbjct: 283 EIP----QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 118/286 (41%), Gaps = 58/286 (20%)
Query: 128 LANMTSLQVLNVAS-NQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLD 186
LAN+ L L + N L G PP +L L LYI + ++ G++P L+ + +L LD
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 187 VSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNG-EIYAETES 245
SYN L+ +P S+ L NL + TF+G I
Sbjct: 132 FSYNALSG-----------------------TLPPSISSLPNLVGI-TFDGNRISGAIPD 167
Query: 246 HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDL 305
Y S + F TS+++S G P + +L DLS L G+
Sbjct: 168 SYGSFSKLF--TSMTISRNRLTGKIPP-TFANLNLAFVDLSRNMLEGDA----------- 213
Query: 306 KTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN 365
+ LFGS + QK+ S F LG + + L L+L N
Sbjct: 214 -------SVLFGSDKN----TQKIHLAKNSLAFDLGKVGLS-----KNLNGLDLRNNRIY 257
Query: 366 GSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
G++P +K L SL++S+N L G IP+ + F ++ A +NN
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF--DVSAYANN 301
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 23/203 (11%)
Query: 103 GLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELY 162
+ +L L LYI ++ ++ L+ + +L L+ + N L+G PP L L +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 163 IDNNDLRGSLPLCLANLTSL-RVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
D N + G++P + + L + +S N+LT I P ++ + LS N +
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLNLAFVDLSRNMLEGDA 213
Query: 222 SLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDG---------GTFPK 272
S+ LF G + H + F L + LS +G GT P+
Sbjct: 214 SV--LF---------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 273 FLYHQHDLNNADLSHLNLSGEFP 295
L L++ ++S NL GE P
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYID 164
L L+ LY+ DN L+ + +L+ L V N+L P G F +LV L EL +D
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLD 117
Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IPI-S 222
N L+ P +LT L L + YN+L +++ LTS++EL L NN + +P +
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 223 LEPLFNLSKLKTFNGEIYAETESHYNSL 250
+ L L LK N ++ E ++SL
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 283 ADLSHLNLSGEFPNWLPENN----TDLKTLLLANNSL----FGSFRMPIHCLQKLATLDV 334
AD L+L + LP T L+ L L +N L G F+ L+ L TL V
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE----LKNLETLWV 92
Query: 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394
++N L +P+ + L L L L RN P F + L L + YN+L ++P+
Sbjct: 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150
Query: 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE 443
+ SL+ L L NN L+ LT LK L+LD N+ + +PE
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE 198
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 39/209 (18%)
Query: 135 QVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 194
+ L++ SN+L+ F L LR LY+++N L+ +LP
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP--------------------- 77
Query: 195 NISSSPLMHLTSIEELILSNNHFQ-IPISL-EPLFNLSKLKTFNGEIYAETESHYNSLTP 252
+ L ++E L +++N Q +PI + + L NL++L+ ++ + ++SLT
Sbjct: 78 ---AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT- 133
Query: 253 KFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENN----TDLKTL 308
+LT +SL GY + + PK ++ + L L L +PE T+LKTL
Sbjct: 134 --KLTYLSL-GYNELQSLPKGVFDKL----TSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
Query: 309 LLANNSLFGSFRMPIHCLQKLATLDVSNN 337
L NN L L+KL L + N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 4/193 (2%)
Query: 356 HLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
L+L N + S+PS +F + L+ L ++ N+L +P + +LE L +++N LQ
Sbjct: 41 KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 415 GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474
L NL L+LD N+ P L L L N L L +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIE 533
L+++ + NN L+ F +L LK L L NN + SL ++ + L +N +
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Query: 534 GQLESIIHYYPYL 546
II+ +L
Sbjct: 219 CTCNGIIYMAKWL 231
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 1/179 (0%)
Query: 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNN 484
+ K+L L NK ++ + L LYL+DN L L L+ + + +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 485 LEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYY 543
L+ F QL L L L N + P SL + + L N+++ + +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602
L L L N+L DKL +L + L NN ++ L++++++ L N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 15/175 (8%)
Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL 513
L L N LS + L L+ + + +N L+ F +L L+ L +++N + L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QAL 100
Query: 514 PSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQL 570
P + L ++ ++ L +N+++ + L L L YN L S+P + DKL L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159
Query: 571 SYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAV 625
+ L NN ++ +L E++ + L +N L +P EG +D++
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP---------EGAFDSL 204
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 668 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 727
I +DL NKL+ LT++R L L+ N L F LK +E+L ++
Sbjct: 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV 762
N L L LA R+ N L +P RV
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRV 128
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L +L EL + N L+D + LA++T+L L++A+NQ++ N P L L EL + N
Sbjct: 215 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 270
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
+ PL A LT+L L+++ NQL + NIS SP+ LT +
Sbjct: 271 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 328
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
+ L SNN SL L N++ L + +I + LTP LT I+ G D
Sbjct: 329 QRLFFSNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 379
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 95 NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
N N I D L L +L L + +N + D + L N+T+L L ++SN ++
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 148
Query: 154 ELVLLRELYIDNN--DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
L L++L N DL+ LANLT+L LD+S N++++ S L LT++E LI
Sbjct: 149 GLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLI 200
Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNG 237
+NN L L NL +L + NG
Sbjct: 201 ATNNQISDITPLGILTNLDEL-SLNG 225
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 130/303 (42%), Gaps = 44/303 (14%)
Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
L +L ++ S NQLT+ +PL +LT + +++++NN L L NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 239 IY-----------------AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281
I + T S ++L+ LTS+ +G+ T K L + L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALS---GLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
D+S +S + T+L++L+ NN + S P+ L L L ++ N
Sbjct: 176 RLDISSNKVSDIS---VLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL-- 228
Query: 342 HIPVEIGTY--LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
+IGT L L L+L+ N + P + + L L + NQ++ P G
Sbjct: 229 ---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAG 280
Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
+L L L+ N L+ S NL NL L L N P +S L L+ S+N
Sbjct: 281 LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNN 336
Query: 460 HLS 462
+S
Sbjct: 337 KVS 339
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPL-CLANLTSLRVLDVSYN 190
T+ Q+L + NQ+T P F L+ L+ELY+ +N L G+LP+ +LT L VLD+ N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 191 QLTENISSSPLMHLTSIEELILSNNHF-QIPISLEPLFNLSKLKTFNGEIYAETESHYNS 249
QLT + S+ L ++EL + N ++P +E L +L+ L ++ + ++
Sbjct: 99 QLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 250 LT 251
L+
Sbjct: 158 LS 159
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 95 NKNTILDQGLCE-LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
N+ T L+ G+ + L++L+ELY+ N L + ++T L VL++ +NQLT F
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 154 ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213
LV L+EL++ N L LP + LT L L + NQL ++I L+S+ L
Sbjct: 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLF 167
Query: 214 NN 215
N
Sbjct: 168 GN 169
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGT 512
LYL DN ++ P SL+ L+++ + +N L G +P F L L VLDL N +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-V 102
Query: 513 LPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN-WIDKLPQ 569
LPS + L ++++ + NK+ +L I +L L L N+L SIP+ D+L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSS 160
Query: 570 LSYILLANNYIEGE 583
L++ L N + E
Sbjct: 161 LTHAYLFGNPWDCE 174
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 111/436 (25%), Positives = 158/436 (36%), Gaps = 65/436 (14%)
Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
L HIP ++ + + LNL+ N P++F L LD +N ++ PE +
Sbjct: 16 LTHIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQIL 72
Query: 400 CFSLEILALSNNTLQGHIFSEKFNL-TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458
L++L L +N L I + F TNL L L N L L LS
Sbjct: 73 PL-LKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSH 130
Query: 459 NHLSG-KIPRWLGSLLALQDIIMPNNNLEGPIPN-EFCQLDCLKVLDLSNNSIFGTLPSC 516
N LS K+ + + ++ N L EF L+ LDLS+N + P C
Sbjct: 131 NGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC 190
Query: 517 ----------------------------LSLGSIEQVHLSKNKIEGQLESIIH--YYPYL 546
LS SI+ + L+ N++ ES + L
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606
LDLSYN LH LP L Y+ L N I+ P L +R + L
Sbjct: 251 TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR----- 305
Query: 607 HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP-----PNGSPMGKEETVQFTTKNMS 661
+ A P D S L Y N P K T T +S
Sbjct: 306 --------AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTF---TGLVS 354
Query: 662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721
Y S+S S LT E + + + + LNL+ N+++ TFS L Q+
Sbjct: 355 LKY-----LSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLR 408
Query: 722 SLDLSYNLLHGKIPPQ 737
LDL N + K+ Q
Sbjct: 409 ILDLGLNEIEQKLSGQ 424
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 694 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-VLNTLAVFRVAYN 752
+ I LNL+HN L PT F+ Q+ LD +N + K+ P+L +L L V + +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPLLKVLNLQHN 83
Query: 753 NLSGKIPDRVAQFST 767
LS +I D+ F T
Sbjct: 84 ELS-QISDQTFVFCT 97
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 140/530 (26%), Positives = 202/530 (38%), Gaps = 93/530 (17%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
+++ VLN+ NQL P F L L N + P L L+VL++ +N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFN-------------LSKLKTFNG- 237
L++ IS + T++ EL L +N I P N LS K G
Sbjct: 85 LSQ-ISDQTFVFCTNLTELDLMSNSIH-KIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGV 142
Query: 238 -------------EIYA----ETESHYNSLTPKFQLTSISLSGYGDG-----GTFPKFLY 275
+I A E E NS K L+S L + G G L
Sbjct: 143 QLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL- 201
Query: 276 HQHDLNNADLS-HLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQ--KLATL 332
LNNA L+ HL E W +NT ++ L LANN L + L+ L L
Sbjct: 202 ----LNNAQLNPHLT---EKLCW-ELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 333 DVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLK--SLDISYNQLTG 390
D+S N L + +YLP L +L+L N P SF + L+ SL ++ + +
Sbjct: 254 DLSYN-NLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
Query: 391 AIPERMAMGCFS------LEILALSNNTLQGHIFSEKFNLTNLKRLQLDG-----NKFIG 439
++ + FS LE L + +N + + L +LK L L
Sbjct: 313 SLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTN 372
Query: 440 EIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCL 499
E SL+ LL L L+ NH+S KI F L L
Sbjct: 373 ETFVSLAHSPLL-TLNLTKNHIS-KIAN-----------------------GTFSWLGQL 407
Query: 500 KVLDLSNNSIFGTLP--SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
++LDL N I L L +I +++LS NK S P L L L L
Sbjct: 408 RILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALK 467
Query: 558 GS--IPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
P+ L L+ + L+NN I L L+ + ++D HNNL+
Sbjct: 468 NVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L +L EL + N L+D + LA++T+L L++A+NQ++ N P L L EL + N
Sbjct: 219 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 274
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
+ PL A LT+L L+++ NQL + NIS SP+ LT +
Sbjct: 275 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 332
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
+ L +NN SL L N++ L + +I + LTP LT I+ G D
Sbjct: 333 QRLFFANNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 383
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 95 NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
N N I D L L +L L + +N + D + L N+T+L L ++SN ++
Sbjct: 97 NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 152
Query: 154 ELVLLRELYIDNN--DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
L L++L N DL+ LANLT+L LD+S N++++ S L LT++E LI
Sbjct: 153 GLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLI 204
Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNG 237
+NN L L NL +L + NG
Sbjct: 205 ATNNQISDITPLGILTNLDEL-SLNG 229
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 130/303 (42%), Gaps = 44/303 (14%)
Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
L +L ++ S NQLT+ +PL +LT + +++++NN L L NL+ L FN +
Sbjct: 66 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 239 IY-----------------AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281
I + T S ++L+ LTS+ +G+ T K L + L
Sbjct: 123 ITDIDPLKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFGNQVTDLKPLANLTTLE 179
Query: 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
D+S +S + T+L++L+ NN + S P+ L L L ++ N
Sbjct: 180 RLDISSNKVSDIS---VLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL-- 232
Query: 342 HIPVEIGTY--LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
+IGT L L L+L+ N + P + + L L + NQ++ P G
Sbjct: 233 ---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAG 284
Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
+L L L+ N L+ S NL NL L L N P +S L L+ ++N
Sbjct: 285 LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 340
Query: 460 HLS 462
+S
Sbjct: 341 KVS 343
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 184/480 (38%), Gaps = 80/480 (16%)
Query: 351 LPGLMHLNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTGAIPERMA-MGCFSLEILAL 408
L L L+LS+N + SF + LKS+D S NQ+ + + +L +L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 409 SNNTLQGHIFSEKFNLTN------LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
+ N+L + + N L+ L + GN + +I + S
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT----------------GNFS 225
Query: 463 GKIPRWLGSLLALQDIIMPN----NNLEGPIPNEFCQL--DCLKVLDLSNNSIFGTLPSC 516
I + L L IM +N++ P N F L ++ LDLS+ +F
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Query: 517 L-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575
+L ++ ++L+ NKI + + L L+LSYN L + LP+++YI L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG-HIPPCLVN----------------TA-- 616
N+I L++++ +DL N L+ H P + + TA
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 617 --LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSG 674
LSE + + + P L N + Q ++N S+
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN----------PSLEQ 455
Query: 675 IDLSCNKLTGEIPTQIGY-----LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 729
+ L N L T++ + L+ ++ L L+HN L P FS+L + L L+ N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 730 L----HGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785
L H +P L +L+ ++ N L PD S + N F+C LS
Sbjct: 516 LTVLSHNDLPANLEILD------ISRNQLLAPNPDVFVSLSVLD---ITHNKFICECELS 566
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 110/496 (22%), Positives = 198/496 (39%), Gaps = 84/496 (16%)
Query: 130 NMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL--PLCLANLTSLRVLDV 187
N+ +L++L++ S+++ P F L L EL + L ++ NL +L LD+
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHFQIPI--SLEPL--FNLSKLKTFNGEIYAET 243
S NQ+ L S++ + S+N + LEPL LS +Y+
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 244 ESHYNSLTPKFQLTSIS-LSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENN 302
+ F+ + L G+G T ++++G F N + ++
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWT------------------VDITGNFSNAISKSQ 232
Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
+L+LA++ + F H ++ D N F G + HL+LS
Sbjct: 233 A--FSLILAHHIMGAGF--GFHNIK-----DPDQNTF-------AGLARSSVRHLDLSHG 276
Query: 363 AFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKF 422
F +K LK L+++YN++ I + G +L++L LS N L G ++S F
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLL-GELYSSNF 334
Query: 423 -NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481
L + + L N ++ L L L DN L+ + + ++ DI +
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLS 389
Query: 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEG-QLESII 540
N +L L ++L+ N I HLS+N++E + +
Sbjct: 390 GN-----------KLVTLPKINLTANLI----------------HLSENRLENLDILYFL 422
Query: 541 HYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQ-----LKEV 594
P+L L L+ NR + + P L + L N ++ +LC L +
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Query: 595 RLIDLSHNNLSGHIPP 610
+++ L+HN L+ +PP
Sbjct: 483 QVLYLNHNYLNS-LPP 497
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L +L EL + N L+D + LA++T+L L++A+NQ++ N P L L EL + N
Sbjct: 215 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 270
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
+ PL A LT+L L+++ NQL + NIS SP+ LT +
Sbjct: 271 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 328
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
+ L NN SL L N++ L + +I + LTP LT I+ G D
Sbjct: 329 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 379
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 16/131 (12%)
Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
L L L+ L I N + D + LA +T+L+ L +NQ++ P G L L EL +
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 223
Query: 164 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
+ N L+ G+L A+LT+L LD++ NQ++ + +PL LT + EL L N
Sbjct: 224 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS--- 273
Query: 222 SLEPLFNLSKL 232
++ PL L+ L
Sbjct: 274 NISPLAGLTAL 284
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 95 NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
N N I D L L +L L + +N + D + L N+T+L L ++SN ++
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 148
Query: 154 ELVLLRELYIDN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
L L++L N DL+ LANLT+L LD+S N++++ S L LT++E LI
Sbjct: 149 GLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLI 200
Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNG 237
+NN L L NL +L + NG
Sbjct: 201 ATNNQISDITPLGILTNLDEL-SLNG 225
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 118/273 (43%), Gaps = 42/273 (15%)
Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
L +L ++ S NQLT+ +PL +LT + +++++NN L L NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 239 IY-----------------AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281
I + T S ++L+ LTS+ +G+ T K L + L
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALS---GLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
D+S +S + T+L++L+ NN + S P+ L L L ++ N
Sbjct: 176 RLDISSNKVSDIS---VLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL-- 228
Query: 342 HIPVEIGTY--LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
+IGT L L L+L+ N + P + + L L + NQ++ P G
Sbjct: 229 ---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAG 280
Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432
+L L L+ N L+ S NL NL L L
Sbjct: 281 LTALTNLELNENQLED--ISPISNLKNLTYLTL 311
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Query: 122 DSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTS 181
D LW ++++LQ+ N+++N +F L LY++ N L LP + NL++
Sbjct: 222 DDQLWHALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSN 271
Query: 182 LRVLDVSYNQLT 193
LRVLD+S+N+LT
Sbjct: 272 LRVLDLSHNRLT 283
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 359 LSRNAFNGS----IPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414
L+R NG+ +P+ ++ L+ LD+S+N+LT ++P + CF L+ +N +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT 306
Query: 415 GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL-YLSDNHLSGKIP 466
+ E NL NL+ L ++GN + + L++ + G + YL DN +P
Sbjct: 307 TLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 677 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG 708
L+ N LT E+P +I L+ +R L+LSHN LT
Sbjct: 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS 284
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 570 LSYILLANNYIEG----EIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY---Y 622
Y L Y+ G E+P ++ L +R++DLSHN L+ P + + Y +
Sbjct: 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQLKYFYFF 301
Query: 623 DAVAPT--WDHASAPALSYFPPNGSPMGKEETVQFTTKNMS---YYYR 665
D + T W+ + L + G+P+ K+ T K+++ +Y R
Sbjct: 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLR 349
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L +L EL + N L+D + LA++T+L L++A+NQ++ N P L L EL + N
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 275
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
+ PL A LT+L L+++ NQL + NIS SP+ LT +
Sbjct: 276 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 333
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
+ L NN SL L N++ L + +I + LTP LT I+ G D
Sbjct: 334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 384
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 16/131 (12%)
Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
L L L+ L I N + D + LA +T+L+ L +NQ++ P G L L EL +
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 228
Query: 164 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
+ N L+ G+L A+LT+L LD++ NQ++ + +PL LT + EL L N
Sbjct: 229 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS--- 278
Query: 222 SLEPLFNLSKL 232
++ PL L+ L
Sbjct: 279 NISPLAGLTAL 289
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 95 NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
N N I D L L +L L + +N + D + L N+T+L L ++SN ++
Sbjct: 98 NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 153
Query: 154 ELVLLRELYIDNN--DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELI 211
L L++L N DL+ LANLT+L LD+S N++++ S L LT++E LI
Sbjct: 154 GLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLI 205
Query: 212 LSNNHFQIPISLEPLFNLSKLKTFNG 237
+NN L L NL +L + NG
Sbjct: 206 ATNNQISDITPLGILTNLDEL-SLNG 230
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 118/273 (43%), Gaps = 42/273 (15%)
Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
L +L ++ S NQLT+ +PL +LT + +++++NN L L NL+ L FN +
Sbjct: 67 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123
Query: 239 IY-----------------AETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281
I + T S ++L+ LTS+ +G+ T K L + L
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFGNQVTDLKPLANLTTLE 180
Query: 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341
D+S +S + T+L++L+ NN + S P+ L L L ++ N
Sbjct: 181 RLDISSNKVSDIS---VLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL-- 233
Query: 342 HIPVEIGTY--LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
+IGT L L L+L+ N + P + + L L + NQ++ P G
Sbjct: 234 ---KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAG 285
Query: 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432
+L L L+ N L+ S NL NL L L
Sbjct: 286 LTALTNLELNENQLED--ISPISNLKNLTYLTL 316
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L +L EL + N L+D + LA++T+L L++A+NQ++ N P L L EL + N
Sbjct: 216 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN 271
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTE------------------NISS-SPLMHLTSI 207
+ PL A LT+L L+++ NQL + NIS SP+ LT +
Sbjct: 272 QISNISPL--AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 329
Query: 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266
+ L NN SL L N++ L + +I + LTP LT I+ G D
Sbjct: 330 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQI--------SDLTPLANLTRITQLGLND 380
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 32/134 (23%)
Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
L L +L L + N + D + L+ +TSLQ LN +SNQ+T
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVT------------------ 164
Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISL 223
DL+ LANLT+L LD+S N++++ S L LT++E LI +NN L
Sbjct: 165 ---DLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL 213
Query: 224 EPLFNLSKLKTFNG 237
L NL +L + NG
Sbjct: 214 GILTNLDEL-SLNG 226
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 16/131 (12%)
Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
L L L+ L I N + D + LA +T+L+ L +NQ++ P G L L EL +
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 164 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
+ N L+ G+L A+LT+L LD++ NQ++ + +PL LT + EL L N
Sbjct: 225 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS--- 274
Query: 222 SLEPLFNLSKL 232
++ PL L+ L
Sbjct: 275 NISPLAGLTAL 285
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
L +L ++ S NQLT+ +PL +LT + +++++NN L L NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 239 I 239
I
Sbjct: 119 I 119
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 95 NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
N N I D L L +L L + +N + D + L N+T+L L ++SN ++
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 148
Query: 154 ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213
L L++L +N + PL ANLT+L LD+S N++++ S L LT++E LI +
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIAT 203
Query: 214 NNHFQIPISLEPLFNLSKLKTFNG 237
NN L L NL +L + NG
Sbjct: 204 NNQISDITPLGILTNLDEL-SLNG 226
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 16/131 (12%)
Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
L L L+ L I N + D + LA +T+L+ L +NQ++ P G L L EL +
Sbjct: 169 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 164 DNNDLR--GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
+ N L+ G+L A+LT+L LD++ NQ++ + +PL LT + EL L N
Sbjct: 225 NGNQLKDIGTL----ASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS--- 274
Query: 222 SLEPLFNLSKL 232
++ PL L+ L
Sbjct: 275 NISPLAGLTAL 285
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
L +L ++ S NQLT+ +PL +LT + +++++NN L L NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 239 I 239
I
Sbjct: 119 I 119
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
L L L L + +N L D + ++N+ +L L + N ++ P L L+ L+
Sbjct: 279 LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEEL 210
NN + S LANLT++ L +NQ+++ +PL +LT I +L
Sbjct: 335 YNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQL 376
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 95 NKNTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFC 153
N N I D L L +L L + +N + D + L N+T+L L ++SN ++
Sbjct: 93 NNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS 148
Query: 154 ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213
L L++L +N + PL ANLT+L LD+S N++++ S L LT++E LI +
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIAT 203
Query: 214 NNHFQIPISLEPLFNLSKLKTFNG 237
NN L L NL +L + NG
Sbjct: 204 NNQISDITPLGILTNLDEL-SLNG 226
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 49/306 (16%)
Query: 179 LTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
L +L ++ S NQLT+ +PL +LT + +++++NN L L NL+ L FN +
Sbjct: 62 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 239 IY-----------------AETESHYNSLTPKFQLTSISLSGYGDGGTFPKF---LYHQH 278
I + T S ++L+ L +S S P +
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERL 178
Query: 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNF 338
D+++ +S +++ + T+L++L+ NN + S P+ L L L ++ N
Sbjct: 179 DISSNKVSDISVLAKL--------TNLESLIATNNQI--SDITPLGILTNLDELSLNGNQ 228
Query: 339 FLGHIPVEIGTY--LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERM 396
+IGT L L L+L+ N + P + + L L + NQ++ P
Sbjct: 229 L-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--- 278
Query: 397 AMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYL 456
G +L L L+ N L+ S NL NL L L N P +S L L+
Sbjct: 279 LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 457 SDNHLS 462
S+N +S
Sbjct: 335 SNNKVS 340
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 104 LCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163
L L L L + +N L D + ++N+ +L L + N ++ P L L+ L+
Sbjct: 279 LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEEL 210
NN + S LANLT++ L +NQ+++ +PL +LT I +L
Sbjct: 335 SNN--KVSDVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQL 376
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 102 QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLREL 161
+G+ L +L L ++DN + D L L N+T + L ++ N L L ++ L
Sbjct: 63 EGIQYLNNLIGLELKDNQITD--LTPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTL 118
Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
+ + + PL A L++L+VL + NQ+T NIS PL LT+++ L + NN
Sbjct: 119 DLTSTQITDVTPL--AGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNNQVN--- 170
Query: 222 SLEPLFNLSKLKTFNGE 238
L PL NLSKL T +
Sbjct: 171 DLTPLANLSKLTTLRAD 187
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382
I L L L++ +N P++ L + L LS N S+ A ++ +K+LD
Sbjct: 65 IQYLNNLIGLELKDNQITDLTPLK---NLTKITELELSGNPLKNV--SAIAGLQSIKTLD 119
Query: 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIP 442
++ Q+T P G +L++L L N + S LTNL+ L + N+ P
Sbjct: 120 LTSTQITDVTP---LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNNQVNDLTP 174
Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP 490
L+ L L DN +S P L SL L ++ + +N + P
Sbjct: 175 --LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 106/467 (22%), Positives = 199/467 (42%), Gaps = 81/467 (17%)
Query: 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIP-VEIGT 349
S +FP P N LK L NN++ R + L++ +++S NF ++ +E+G
Sbjct: 140 SIKFPKDFPARN--LKVLDFQNNAIHYISREDMRSLEQ--AINLSLNFNGNNVKGIELG- 194
Query: 350 YLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILAL 408
AF+ +I S + +L + +N L + + + +G F ++ +
Sbjct: 195 -------------AFDSTIFQSL-NFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDI 240
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL-LGGLYLSDNHLSGKIPR 467
S+ L+G +++ L L ++F +I + +C+ L L L+ HL G +P
Sbjct: 241 SSAMLKG------LCEMSVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPS 292
Query: 468 WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS------CL-SLG 520
+ L L+ +++ N+ + + CQ+ L++ I G + CL LG
Sbjct: 293 GMKGLNLLKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLG 347
Query: 521 SIEQVHLSKNKIEG------QLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574
+++ + LS N IE QL+++ H L TL+LS+N G + PQL +
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSH----LQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Query: 575 LANNYIEGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633
LA + P Q L +++++L++ C ++T S + A P H +
Sbjct: 404 LAFTRLHINAPQSPFQNLHFLQVLNLTY---------CFLDT--SNQHLLAGLPVLRHLN 452
Query: 634 APALSYFPPNGSPMGKEETVQ------------FTTKNMSYYYRGRILTSMSGIDLSCNK 681
+ + +TV + +++ G+ MS +DLS N
Sbjct: 453 LKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGK----MSHVDLSHNS 508
Query: 682 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
LT + + +L I LNL+ N++ P L Q +++LS+N
Sbjct: 509 LTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 100/282 (35%), Gaps = 57/282 (20%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
D+ + I + L S+E ++L +++ + + L LDL+ L G +P+
Sbjct: 234 DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPS 292
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYY 622
+ L L ++L+ N+ + QLCQ+ L+H + G++ + E
Sbjct: 293 GMKGLNLLKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEK-- 345
Query: 623 DAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKL 682
L ++ +DLS N +
Sbjct: 346 ----------------------------------------------LGNLQTLDLSHNDI 359
Query: 683 TGE--IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ-LI 739
Q+ L+ ++ LNLSHN G F Q+E LDL++ LH P
Sbjct: 360 EASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Query: 740 VLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 781
L+ L V + Y L +A + +GN F G
Sbjct: 420 NLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 110 LQELYIRDNDLRDSL-LWCLANMTSLQVLNVASNQLTGNFPPGFCELVL-----LRELYI 163
L LYIR N + L + CL + +LQ L+++ N + + C L L L+ L +
Sbjct: 324 LTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS---DCCSLQLKNLSHLQTLNL 380
Query: 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213
+N+ G L +LD+++ +L N SP +L ++ L L+
Sbjct: 381 SHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 132 TSLQVLNVASNQLTGNFPPGFC---ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVS 188
++VL++A LT C +L+L+ L + +N LR LP LA L L VL S
Sbjct: 441 ADVRVLHLAHKDLTV-----LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQAS 494
Query: 189 YNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
N L EN+ + +L ++EL+L NN Q +++PL + +L N
Sbjct: 495 DNAL-ENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 132 TSLQVLNVASNQLTGNFPPGFC---ELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVS 188
++VL++A LT C +L+L+ L + +N LR LP LA L L VL S
Sbjct: 441 ADVRVLHLAHKDLTV-----LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQAS 494
Query: 189 YNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFN 236
N L EN+ + +L ++EL+L NN Q +++PL + +L N
Sbjct: 495 DNAL-ENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYID 164
EL L +LY+ N L+ +TSL LN+++NQL + P G F +L L+EL ++
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALN 108
Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
N L+ LT L+ L + NQL +++ LTS++ + L +N +
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW 160
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 502 LDLSNNSIFGTLPSCL--SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGS 559
LDL NS+ +LP+ + L S+ Q++L NK++ + + L L+LS N+L S
Sbjct: 33 LDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 560 IPNWI-DKLPQLSYILLANNYIEG---EIPVQLCQLKEVRL 596
+PN + DKL QL + L N ++ + +L QLK++RL
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 137 LNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLAN-LTSLRVLDVSYNQLTE 194
L++ +N L + P G F EL L +LY+ N L+ SLP + N LTSL L++S NQL +
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL-Q 89
Query: 195 NISSSPLMHLTSIEELILSNNHFQ-IPISL-EPLFNLSKLKTFNGEIYAETESHYNSLT 251
++ + LT ++EL L+ N Q +P + + L L L+ + ++ + + ++ LT
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
LTS++ + L NKL LT + LNLS N L F L Q++ L L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV-AQFSTFEEDSYEGNPFLCGLP 783
L L L R+ N L +PD V + ++ + NP+ C P
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 44/278 (15%)
Query: 391 AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450
A+P+ ++ +L L NN + + L +L L L NK ++ S
Sbjct: 47 AVPKEISP---DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 451 LGGLYLSDNHLSGKIPRWLGSLLALQD---------------------IIMPNNNLE--G 487
L LY+S NHL P SL+ L+ I M N LE G
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163
Query: 488 PIPNEF--CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEG-QLESIIHYYP 544
P F +L+ L++ + I LP L+ ++HL NKI+ +LE ++ Y
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN-----ELHLDHNKIQAIELEDLLRYS- 217
Query: 545 YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604
L L L +N++ + LP L + L NN + +P L LK ++++ L NN+
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNI 276
Query: 605 S--GHIPPCLVNTALSEGYYDAVA------PTWDHASA 634
+ G C V + YY+ ++ P W+ A
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 96/243 (39%), Gaps = 44/243 (18%)
Query: 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNF 338
DL N D+S L +F L L+L NN + L+KL L +S N
Sbjct: 60 DLQNNDISELR-KDDFKGL-----QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 339 FLGHIPVEIGTYLP----------------------GLMHLNLSRNAFN-----GSIPSS 371
VEI LP GL ++N N G P +
Sbjct: 114 L-----VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 372 FADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQ 431
F +K L L IS +LTG IP+ + +L L L +N +Q + + L RL
Sbjct: 169 FDGLK-LNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223
Query: 432 LDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPN 491
L N+ SLS L L+L +N LS ++P L L LQ + + NN+ N
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282
Query: 492 EFC 494
+FC
Sbjct: 283 DFC 285
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 110 LQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR 169
L EL++ N ++ L L + L L + NQ+ L LREL++DNN L
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL- 253
Query: 170 GSLPLCLANLTSLRVLDVSYNQLTE 194
+P L +L L+V+ + N +T+
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITK 278
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 97 NTILD-QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCEL 155
N I D L L +L+ELY+ ++++ D + LAN+T LN+ +N + P
Sbjct: 98 NKITDISALQNLTNLRELYLNEDNISD--ISPLANLTKXYSLNLGANHNLSDLSP-LSNX 154
Query: 156 VLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
L L + + ++ P+ ANLT L L ++YNQ+ E+I SPL LTS+
Sbjct: 155 TGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQI-EDI--SPLASLTSL 201
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 131 MTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYN 190
+T+L+ LN+ NQ+T P LV L LYI N + L NLT+LR L ++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLN-- 118
Query: 191 QLTENISS-SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY-AETESHYN 248
+NIS SPL +LT L L NH L +LS L G Y TES
Sbjct: 119 --EDNISDISPLANLTKXYSLNLGANH--------NLSDLSPLSNXTGLNYLTVTESKVK 168
Query: 249 SLTPKFQLTSI 259
+TP LT +
Sbjct: 169 DVTPIANLTDL 179
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 148/360 (41%), Gaps = 67/360 (18%)
Query: 161 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEEL---------- 210
L I NN RG L+SL +L + YNQ + + + L ++E L
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGA 118
Query: 211 ILSNNHFQIPISLEPLF----NLSKLK----------------TFNGEIYAETESHYNSL 250
+LS N F+ SLE L N+ K++ TFN E N
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178
Query: 251 TPKF---QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGE-FPNWLPEN----- 301
F +L+SI+L + + + + N ++ L+LSG F + +
Sbjct: 179 GKHFTLLRLSSITLQDMNE--YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236
Query: 302 -NTDLKTLLLANNSLFGS------FRMPIHCLQK------LATLDVSNNFFLGHIPVEIG 348
T +++L+L+N+ GS F+ P + K + T D+S + + +
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVF 295
Query: 349 TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
++ L L L++N N ++F + L L++S N L G+I RM LE+L L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLSGKIPR 467
S N ++ L NLK L LD N+ + +P+ + + L ++L N PR
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
T + + L+ N++ LT + LNLS N L F NL ++E LDLSYN
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 729 LLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV-AQFSTFEEDSYEGNPFLCGLP 783
+ + L L + N L +PD + + ++ ++ NP+ C P
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 123/303 (40%), Gaps = 28/303 (9%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSF-ADMKMLKSLDISYNQLTGAIPERM-AMGCFSLEILAL 408
L L L L N P+SF +M+ LD+++N++ E + +L L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 409 SNNTLQGH----IFSEK----FNLTNLKRLQLDGNKFIGEIPESLSKCYL--LGGLYLSD 458
S+ TLQ + EK F T++ L L GN F ES++K + + G +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF----KESMAKRFFDAIAGTKIQS 243
Query: 459 NHLSGKIPRWLGSLLALQDIIMPNN-NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
LS +GS + P+N +G + +K DLS + IF L S
Sbjct: 244 LILSNSYN--MGSSFGHTNFKDPDNFTFKG------LEASGVKTCDLSKSKIFALLKSVF 295
Query: 518 S-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576
S +EQ+ L++N+I ++ +L+ L+LS N L + L +L + L+
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355
Query: 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPA 636
N+I L ++ + L N L +P + + S WD S P
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD-CSCPR 413
Query: 637 LSY 639
+ Y
Sbjct: 414 IDY 416
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 616 ALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGI 675
++++ ++DA+A T + + SY GS G F + ++ ++G + +
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSY--NMGSSFGH---TNFKDPD-NFTFKGLEASGVKTC 280
Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
DLS +K+ + + + T + L L+ N + F L + L+LS N L G I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 736 PQLIV-LNTLAVFRVAYNNLSG 756
++ L+ L V ++YN++
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA 361
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 115 IRDNDLRDSLLWCL-----ANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLR 169
++ DL S ++ L ++ T L+ L +A N++ F L L +L + N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 170 GSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
NL L VLD+SYN + + + L +++EL L N +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK 384
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%)
Query: 97 NTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELV 156
N I D L HL +L + N L N+ L+VL+++ N + F L
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 157 LLRELYIDNNDLRGSLPLCLANLTSLR 183
L+EL +D N L+ LTSL+
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQ 398
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 159/392 (40%), Gaps = 92/392 (23%)
Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN---NTLQGHIFSEKFN 423
SIPS +KSLD+S+N++T I C +L++L L + NT++G F ++
Sbjct: 45 SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAF---YS 98
Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI-IMPN 482
L +L+ L L SDNHLS W G L +L+ + +M N
Sbjct: 99 LGSLEHLDL------------------------SDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL-----PSCLSLGSIEQVHLSKNKIEGQ-L 536
+ + F L L+ L + N F + SL +E LS + Q L
Sbjct: 135 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 194
Query: 537 ESI--IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI-----------EGE 583
+SI IH+ +TL LS + I + D L + Y+ L + + E
Sbjct: 195 KSIRDIHH----LTLHLSESAFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVS 248
Query: 584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPN 643
P++ + L D S N L + L LSE + D + L F P+
Sbjct: 249 SPMKKLAFRGSVLTDESFNELLKLLRYIL---ELSEVEF-------DDCTLNGLGDFNPS 298
Query: 644 G----SPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 699
S +GK ETV ++ +Y L ++ T L +++ +
Sbjct: 299 ESDVVSELGKVETVTIRRLHIPQFY-----------------LFYDLSTVYSLLEKVKRI 341
Query: 700 NLSHNNLTGTIPTTFS-NLKQIESLDLSYNLL 730
+ N+ +P +FS +LK +E LDLS NL+
Sbjct: 342 TV-ENSKVFLVPCSFSQHLKSLEFLDLSENLM 372
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 494 CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
C L+VLD+SNN++ L L ++++++S+NK++ ++ + +P L+ + ++
Sbjct: 454 CIPQTLEVLDVSNNNLDSF---SLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKIAS 508
Query: 554 NRLHGSIPNWI-DKLPQLSYILLANNYIEGEIP 585
N+L S+P+ I D+L L I L N + P
Sbjct: 509 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 130 NMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLAN-LTSLRVLDV 187
++T L L +A+NQL + P G F L L +LY+ N L+ SLP + + LT L+ L +
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
+ NQL ++I + LT+++ L LS N Q
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYID 164
+L L L + +N L L ++T L L + NQL + P G F L L+EL ++
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139
Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
N L+ LT+L+ L +S NQL +++ L ++ + L N F
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 11/183 (6%)
Query: 370 SSFADMKMLKSLDISYNQLTGAIPERMAMGCFS----LEILALSNNTLQGHIFSEKFNLT 425
++F + L L++ YNQL + ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL 485
L +L L GN+ + L L L+ N L L LQ + + N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 486 EGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPY 545
+ F +L L+ + L N C L + + + NK++ +H P
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQF--DCSRCEILYLSQWIRENSNKVKDGTGQNLHESPD 225
Query: 546 LVT 548
VT
Sbjct: 226 GVT 228
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 159/392 (40%), Gaps = 92/392 (23%)
Query: 367 SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN---NTLQGHIFSEKFN 423
SIPS +KSLD+S+N++T I C +L++L L + NT++G F ++
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAF---YS 72
Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDI-IMPN 482
L +L+ L L SDNHLS W G L +L+ + +M N
Sbjct: 73 LGSLEHLDL------------------------SDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Query: 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL-----PSCLSLGSIEQVHLSKNKIEGQ-L 536
+ + F L L+ L + N F + SL +E LS + Q L
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168
Query: 537 ESI--IHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI-----------EGE 583
+SI IH+ +TL LS + I + D L + Y+ L + + E
Sbjct: 169 KSIRDIHH----LTLHLSESAFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVS 222
Query: 584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPN 643
P++ + L D S N L + L LSE + D + L F P+
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYIL---ELSEVEF-------DDCTLNGLGDFNPS 272
Query: 644 G----SPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 699
S +GK ETV ++ +Y L ++ T L +++ +
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFY-----------------LFYDLSTVYSLLEKVKRI 315
Query: 700 NLSHNNLTGTIPTTFS-NLKQIESLDLSYNLL 730
+ N+ +P +FS +LK +E LDLS NL+
Sbjct: 316 TV-ENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 494 CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553
C L+VLD+SNN++ L L ++++++S+NK++ ++ + +P L+ + +S
Sbjct: 428 CIPQTLEVLDVSNNNLDSF---SLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISR 482
Query: 554 NRLHGSIPNWI-DKLPQLSYILLANNYIEGEIP 585
N+L S+P+ I D+L L I L N + P
Sbjct: 483 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 130 NMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDLRGSLPLCLAN-LTSLRVLDV 187
++T L L +A+NQL + P G F L L +LY+ N L+ SLP + + LT L+ L +
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
+ NQL ++I + LT+++ L LS N Q
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYID 164
+L L L + +N L L ++T L L + NQL + P G F L L+EL ++
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN 139
Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
N L+ LT+L+ L +S NQL +++ L ++ + L N F
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 11/183 (6%)
Query: 370 SSFADMKMLKSLDISYNQLTGAIPERMAMGCFS----LEILALSNNTLQGHIFSEKFNLT 425
++F + L L++ YNQL + ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL 485
L +L L GN+ + L L L+ N L L LQ + + N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 486 EGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPY 545
+ F +L L+ + L N C +L + + + NK++ +H P
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQF--DCSRCETLYLSQWIRENSNKVKDGTGQNLHESPD 225
Query: 546 LVT 548
VT
Sbjct: 226 GVT 228
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 124
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 123
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 123
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 125
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 67 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 124
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 123
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 19/236 (8%)
Query: 180 TSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH------FQIPISLEPLFNLSKLK 233
TSL+ LD+S+N + SS + L +E L +++ F + +SL NL L
Sbjct: 373 TSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLD 427
Query: 234 TFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTF-PKFLYHQHDLNNADLSHLNLSG 292
+ +N L+ L + ++G F P +L DLS L
Sbjct: 428 ISHTHTRVAFNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 293 EFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP 352
P + + L+ L +++N+ F P CL L LD S N + E+ +
Sbjct: 485 LSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 353 GLMHLNLSRNAFNGSIP-SSFAD-MKMLKSLDISYNQLTGAIP-ERMAMGCFSLEI 405
L LNL++N F + SF +K + L + ++ A P ++ M SL I
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 599
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 16/227 (7%)
Query: 507 NSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL--HGSIPNWI 564
N FG P+ L L S++++ + NK + P L LDLS N L G
Sbjct: 313 NCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 565 DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDA 624
L Y+ L+ N + + L+++ +D H+NL + V +L Y
Sbjct: 370 FGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 427
Query: 625 VAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGI---DLSCNK 681
++ T H F NG + E ++ + + I T + + DLS +
Sbjct: 428 ISHT--HTRVAFNGIF--NG--LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 682 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HL 147
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 19/235 (8%)
Query: 181 SLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH------FQIPISLEPLFNLSKLKT 234
SL+ LD+S+N + SS + L +E L +++ F + +SL NL L
Sbjct: 398 SLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDI 452
Query: 235 FNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTF-PKFLYHQHDLNNADLSHLNLSGE 293
+ +N L+ L + ++G F P +L DLS L
Sbjct: 453 SHTHTRVAFNGIFNGLS---SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 294 FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPG 353
P + + L+ L +++N+ F P CL L LD S N + E+ +
Sbjct: 510 SPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 568
Query: 354 LMHLNLSRNAFNGSIP-SSFAD-MKMLKSLDISYNQLTGAIP-ERMAMGCFSLEI 405
L LNL++N F + SF +K + L + ++ A P ++ M SL I
Sbjct: 569 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 623
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
L +++ +DLS +L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 133/551 (24%), Positives = 236/551 (42%), Gaps = 106/551 (19%)
Query: 246 HYNSLTPKFQLTSISLSG------YGDGGTFPKFLYH---------------QHDLNNAD 284
H ++ QL +I L+G T PKFL H H+L N +
Sbjct: 72 HEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLE 131
Query: 285 LSHLNLSGEFPNWLPEN--NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGH 342
HL + LPEN +LK L NN++ R + L++ L ++ F G+
Sbjct: 132 SLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLN---FNGN 188
Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD--ISYNQLTGAIPERMAMGC 400
+I PG AF I F +K SL+ I + L + + + +G
Sbjct: 189 ---DIKGIEPG---------AF---ISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGT 233
Query: 401 FS-LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL-LGGLYLSD 458
F + L++ T +G +++ + L ++F ++ S +C+ + L L+
Sbjct: 234 FEDTDDQYLTSATFEG------LCDMSVESINLQKHRF-SDLSSSTFRCFTRVQELDLTA 286
Query: 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTL----- 513
HL+G +P + + +L+ +++ N+ + + CQ++ L + I G +
Sbjct: 287 AHLNG-LPSGIEGMNSLKKLVLNANSFD-----QLCQINAASFPSLRDLYIKGNMRKLDL 340
Query: 514 -PSCL-SLGSIEQVHLSKNKIEG------QLESIIHYYPYLVTLDLSYNRLHGSIPNWID 565
CL L +++++ LS + IE QL+++ H L L+LSYN G
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH----LQYLNLSYNEPLGLEDQAFK 396
Query: 566 KLPQLSYILLANNYIEGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDA 624
+ PQL + +A ++ + P Q L +R+++LSH CL++T S + A
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH---------CLLDT--SNQHLLA 445
Query: 625 VAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG 684
H + S+ +GS + K +Q M IL+S CN L+
Sbjct: 446 GLQDLRHLNLQGNSF--QDGS-ISKTNLLQ-----MVGSLEILILSS-------CNLLSI 490
Query: 685 EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-VLNT 743
+ G L + L+LSHN+LTG S+LK + L+++ N + IPP L+ L+
Sbjct: 491 DQQAFHG-LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR-IIPPHLLPALSQ 547
Query: 744 LAVFRVAYNNL 754
++ +++N L
Sbjct: 548 QSIINLSHNPL 558
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 107/270 (39%), Gaps = 47/270 (17%)
Query: 325 CLQKLATLDVSNNFFLGHIPVEIG-------TYLPGLMHLNLSRNAFNGSIPSSFADMKM 377
CL+KL L L H +E L L +LNLS N G +F +
Sbjct: 344 CLEKLENLQ---KLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 378 LKSLDISYNQLTGAIPERMAMGCFSLEILALSN---NTLQGHIFSEKFNLTNLKRLQLDG 434
L+ LD+++ L P L +L LS+ +T H+ + L +L+ L L G
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLA---GLQDLRHLNLQG 457
Query: 435 NKFI-GEIPES-------------LSKCYLLG-------------GLYLSDNHLSGKIPR 467
N F G I ++ LS C LL L LS N L+G
Sbjct: 458 NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMD 517
Query: 468 WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHL 527
L L L + M +NN+ P+ L +++LS+N + T C ++ I
Sbjct: 518 ALSHLKGLY-LNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCT---CSNIHFITWYKE 573
Query: 528 SKNKIEGQLESIIHYYPYLVTLDLSYNRLH 557
+ +K+E E+ P L + LS +LH
Sbjct: 574 NLHKLEDSEETTCANPPSLRGVKLSDVKLH 603
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 141/321 (43%), Gaps = 44/321 (13%)
Query: 102 QGLCEL----VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVL 157
+GLC++ ++LQ+ R +DL S C T +Q L++ + L G P G +
Sbjct: 248 EGLCDMSVESINLQK--HRFSDLSSSTFRCF---TRVQELDLTAAHLNG-LPSGIEGMNS 301
Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
L++L ++ N + A+ SLR L + N ++ + L L ++++L LS++
Sbjct: 302 LKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI 361
Query: 218 QIP----ISLEPLFNLSKLK-TFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPK 272
+ + L+ L +L L ++N + E ++ P+ +L ++ +
Sbjct: 362 EASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKE--CPQLELLDVAFTHLHVKAPHSP 419
Query: 273 F----------LYH-------QHDLNN-ADLSHLNLSG-EFPNW------LPENNTDLKT 307
F L H QH L DL HLNL G F + L + L+
Sbjct: 420 FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Query: 308 LLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS 367
L+L++ +L + H L+ + LD+S+N G ++ ++L GL +LN++ N
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD-SMDALSHLKGL-YLNMASNNIRII 537
Query: 368 IPSSFADMKMLKSLDISYNQL 388
P + +++S+N L
Sbjct: 538 PPHLLPALSQQSIINLSHNPL 558
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D L HL L + N ++ L + ++SLQ L L NFP G L
Sbjct: 68 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIG--HL 125
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQL 192
L+EL + +N ++ LP +NLT+L LD+S N++
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 690 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744
IG+L ++ LN++HN + +P FSNL +E LDLS N + L VL+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 107/250 (42%), Gaps = 28/250 (11%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSF-ADMKMLKSLDISYNQLTGAIPERM-AMGCFSLEILAL 408
L L L L N P+SF +M+ LD+++N++ E + +L L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 409 SNNTLQGH----IFSEK----FNLTNLKRLQLDGNKFIGEIPESLSKCYL--LGGLYLSD 458
S+ TLQ + EK F T++ L L GN F ES++K + + G +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF----KESMAKRFFDAIAGTKIQS 243
Query: 459 NHLSGKIPRWLGSLLALQDIIMPNN-NLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL 517
LS +GS + P+N +G + +K DLS + IF L S
Sbjct: 244 LILSNSYN--MGSSFGHTNFKDPDNFTFKG------LEASGVKTCDLSKSKIFALLKSVF 295
Query: 518 S-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILL 575
S +EQ+ L++N+I ++ +L L L N+L S+P+ I D+L L I L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 354
Query: 576 ANNYIEGEIP 585
N + P
Sbjct: 355 HTNPWDCSCP 364
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 2/170 (1%)
Query: 320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLK 379
++P H Q A L ++NN F I LP L +N S N +F +
Sbjct: 25 KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84
Query: 380 SLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIG 439
+ ++ N+L + +M G SL+ L L +N + L++++ L L N+
Sbjct: 85 EILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143
Query: 440 EIPESLSKCYLLGGLYLSDNHLSGKI-PRWLGSLLALQDIIMPNNNLEGP 488
P + + L L L N + WLG L + I+ N + P
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP 193
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 65
Query: 736 PQLI-VLNTLAVFRVAYNNLSGKIPDRVAQFST 767
P+L L L V + +N LS ++ D+ F T
Sbjct: 66 PELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 151/635 (23%), Positives = 254/635 (40%), Gaps = 99/635 (15%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
T++ VLN+ NQL F L L + N + P L L+VL++ +N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
L++ +S T++ EL L +N Q I P L T +
Sbjct: 85 LSQ-LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD--------------- 127
Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLA 311
L+ LS G + L+N + L S E + N+ LK L L+
Sbjct: 128 ----LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFA---NSSLKKLELS 179
Query: 312 NNSLFGSFRMPIHCLQKLATLDVSNNFFLG-----HIPVEIGTYLPGLMHLNLSRNAFNG 366
+N + H + +L L + NN LG + +E+ + +L+LS + +
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELAN--TSIRNLSLSNSQLST 236
Query: 367 SIPSSFADMKM--LKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK--- 421
+ ++F +K L LD+SYN L + A LE L N +Q H+FS
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQ-HLFSHSLHG 294
Query: 422 -FNLT--NLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474
FN+ NLKR + + +P+ S L L + DN + G L+
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354
Query: 475 LQDIIMPNN--NLEGPIPNEFCQL--DCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSK 529
L+ + + N+ +L F L L +L+L+ N I S LG +E + L
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414
Query: 530 NKI----EGQ----LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581
N+I GQ LE+I Y LSYN+ N +P L ++L ++
Sbjct: 415 NEIGQELTGQEWRGLENIFEIY-------LSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 582 G--EIPVQLCQLKEVRLIDLS---HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPA 636
P L+ + ++DLS N++ + L + + ++ +A W HA+
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP-- 525
Query: 637 LSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI-GYLTR 695
G P+ Y+ +G L+ + ++L N EIP ++ L
Sbjct: 526 -------GGPI--------------YFLKG--LSHLHILNLESNGF-DEIPVEVFKDLFE 561
Query: 696 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
++ ++L NNL + F+N ++SL+L NL+
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 116/293 (39%), Gaps = 38/293 (12%)
Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
L +P ++ T + LNL+ N ++F L SLD+ +N ++ PE +
Sbjct: 16 LTQVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQK 71
Query: 400 CFSLEILALSNNTLQGHIFSEKFNL-TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458
L++L L +N L + + F TNL L L N K L L LS
Sbjct: 72 LPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130
Query: 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQL--DCLKVLDLSNNSI------- 509
N LS L LQ++++ NN ++ E LK L+LS+N I
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190
Query: 510 -------FGTL-------PS-----CLSLG--SIEQVHLSKNKIEGQLESII--HYYPYL 546
FG PS CL L SI + LS +++ + + L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250
Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599
LDLSYN L+ + LPQL Y L N I+ L L VR ++L
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 70
Query: 736 PQLI-VLNTLAVFRVAYNNLSGKIPDRVAQFST 767
P+L L L V + +N LS ++ D+ F T
Sbjct: 71 PELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 102
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 151/635 (23%), Positives = 254/635 (40%), Gaps = 99/635 (15%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
T++ VLN+ NQL F L L + N + P L L+VL++ +N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
L++ +S T++ EL L +N Q I P L T +
Sbjct: 90 LSQ-LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD--------------- 132
Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLA 311
L+ LS G + L+N + L S E + N+ LK L L+
Sbjct: 133 ----LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFA---NSSLKKLELS 184
Query: 312 NNSLFGSFRMPIHCLQKLATLDVSNNFFLG-----HIPVEIGTYLPGLMHLNLSRNAFNG 366
+N + H + +L L + NN LG + +E+ + +L+LS + +
Sbjct: 185 SNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELAN--TSIRNLSLSNSQLST 241
Query: 367 SIPSSFADMKM--LKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK--- 421
+ ++F +K L LD+SYN L + A LE L N +Q H+FS
Sbjct: 242 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQ-HLFSHSLHG 299
Query: 422 -FNLT--NLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474
FN+ NLKR + + +P+ S L L + DN + G L+
Sbjct: 300 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 359
Query: 475 LQDIIMPNN--NLEGPIPNEFCQL--DCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSK 529
L+ + + N+ +L F L L +L+L+ N I S LG +E + L
Sbjct: 360 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 419
Query: 530 NKI----EGQ----LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581
N+I GQ LE+I Y LSYN+ N +P L ++L ++
Sbjct: 420 NEIGQELTGQEWRGLENIFEIY-------LSYNKYLQLTRNSFALVPSLQRLMLRRVALK 472
Query: 582 G--EIPVQLCQLKEVRLIDLS---HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPA 636
P L+ + ++DLS N++ + L + + ++ +A W HA+
Sbjct: 473 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP-- 530
Query: 637 LSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI-GYLTR 695
G P+ Y+ +G L+ + ++L N EIP ++ L
Sbjct: 531 -------GGPI--------------YFLKG--LSHLHILNLESNGF-DEIPVEVFKDLFE 566
Query: 696 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
++ ++L NNL + F+N ++SL+L NL+
Sbjct: 567 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 601
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 116/293 (39%), Gaps = 38/293 (12%)
Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
L +P ++ T + LNL+ N ++F L SLD+ +N ++ PE +
Sbjct: 21 LTQVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQK 76
Query: 400 CFSLEILALSNNTLQGHIFSEKFNL-TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458
L++L L +N L + + F TNL L L N K L L LS
Sbjct: 77 LPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 135
Query: 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQL--DCLKVLDLSNNSI------- 509
N LS L LQ++++ NN ++ E LK L+LS+N I
Sbjct: 136 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 195
Query: 510 -------FGTL-------PS-----CLSLG--SIEQVHLSKNKIEGQLESII--HYYPYL 546
FG PS CL L SI + LS +++ + + L
Sbjct: 196 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 255
Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599
LDLSYN L+ + LPQL Y L N I+ L L VR ++L
Sbjct: 256 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLE 75
Query: 736 PQLI-VLNTLAVFRVAYNNLSGKIPDRVAQFST 767
P+L L L V + +N LS ++ D+ F T
Sbjct: 76 PELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 107
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 151/635 (23%), Positives = 254/635 (40%), Gaps = 99/635 (15%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
T++ VLN+ NQL F L L + N + P L L+VL++ +N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLT 251
L++ +S T++ EL L +N Q I P L T +
Sbjct: 95 LSQ-LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD--------------- 137
Query: 252 PKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLA 311
L+ LS G + L+N + L S E + N+ LK L L+
Sbjct: 138 ----LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFA---NSSLKKLELS 189
Query: 312 NNSLFGSFRMPIHCLQKLATLDVSNNFFLG-----HIPVEIGTYLPGLMHLNLSRNAFNG 366
+N + H + +L L + NN LG + +E+ + +L+LS + +
Sbjct: 190 SNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELAN--TSIRNLSLSNSQLST 246
Query: 367 SIPSSFADMKM--LKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK--- 421
+ ++F +K L LD+SYN L + A LE L N +Q H+FS
Sbjct: 247 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQ-HLFSHSLHG 304
Query: 422 -FNLT--NLKRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474
FN+ NLKR + + +P+ S L L + DN + G L+
Sbjct: 305 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 364
Query: 475 LQDIIMPNN--NLEGPIPNEFCQL--DCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSK 529
L+ + + N+ +L F L L +L+L+ N I S LG +E + L
Sbjct: 365 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 424
Query: 530 NKI----EGQ----LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581
N+I GQ LE+I Y LSYN+ N +P L ++L ++
Sbjct: 425 NEIGQELTGQEWRGLENIFEIY-------LSYNKYLQLTRNSFALVPSLQRLMLRRVALK 477
Query: 582 G--EIPVQLCQLKEVRLIDLS---HNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPA 636
P L+ + ++DLS N++ + L + + ++ +A W HA+
Sbjct: 478 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP-- 535
Query: 637 LSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI-GYLTR 695
G P+ Y+ +G L+ + ++L N EIP ++ L
Sbjct: 536 -------GGPI--------------YFLKG--LSHLHILNLESNGF-DEIPVEVFKDLFE 571
Query: 696 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
++ ++L NNL + F+N ++SL+L NL+
Sbjct: 572 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 606
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 116/293 (39%), Gaps = 38/293 (12%)
Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG 399
L +P ++ T + LNL+ N ++F L SLD+ +N ++ PE +
Sbjct: 26 LTQVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQK 81
Query: 400 CFSLEILALSNNTLQGHIFSEKFNL-TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458
L++L L +N L + + F TNL L L N K L L LS
Sbjct: 82 LPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 140
Query: 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQL--DCLKVLDLSNNSI------- 509
N LS L LQ++++ NN ++ E LK L+LS+N I
Sbjct: 141 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 200
Query: 510 -------FGTL-------PS-----CLSLG--SIEQVHLSKNKIEGQLESII--HYYPYL 546
FG PS CL L SI + LS +++ + + L
Sbjct: 201 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 260
Query: 547 VTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599
LDLSYN L+ + LPQL Y L N I+ L L VR ++L
Sbjct: 261 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 313
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSF--ADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
L L L L RN + +M L++LD+S N L +R S+ +L L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
S+N L G +F + +K L L N+ I IP+ ++ L L ++ N L
Sbjct: 436 SSNMLTGSVF--RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 469 LGSLLALQDIIMPNNNLEGPIP 490
L +LQ I + +N + P
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIP 711
V TKNMS S+ +D+S N L + + I LNLS N LTG++
Sbjct: 395 VALMTKNMS---------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV- 444
Query: 712 TTFSNL-KQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRV-AQFSTFE 769
F L +++ LDL N + IP + L L VA N L +PD V + ++ +
Sbjct: 445 --FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500
Query: 770 EDSYEGNPFLCGLP 783
NP+ C P
Sbjct: 501 YIWLHDNPWDCTCP 514
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 357 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIP-ERMAMGCFSLEILALSNNTLQG 415
LN ++N F S+ + +K L++L + N L M SLE L +S N+L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 416 HIF------SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWL 469
H + +E + NL L G+ F P+ + L L +N + IP+ +
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK-------VKVLDLHNNRIMS-IPKDV 469
Query: 470 GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP 514
L ALQ++ + +N L+ F +L L+ + L +N T P
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 305 LKTLLLANNSLFGSFRMPIHC--LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRN 362
L+TL+L N L F++ + + L TLDVS N H + ++ LNLS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 363 AFNG---------------------SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
G SIP ++ L+ L+++ NQL ++P+ +
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLT 497
Query: 402 SLEILALSNN 411
SL+ + L +N
Sbjct: 498 SLQYIWLHDN 507
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 650 EETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 709
E V ++ +N+++ + + + LS N ++ I +L+ +R L LSHN +
Sbjct: 33 ESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91
Query: 710 IPTTFSNLKQIESLDLSYNLLHG 732
F + +E LD+S+N L
Sbjct: 92 DFHVFLFNQDLEYLDVSHNRLQN 114
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 12/87 (13%)
Query: 133 SLQVLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVS 188
S+ VLN++SN LTG+ PP ++ L + NN + S+P + +L +L+ L+V+
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPK------VKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481
Query: 189 YNQLTENISSSPLMHLTSIEELILSNN 215
NQL +++ LTS++ + L +N
Sbjct: 482 SNQL-KSVPDGVFDRLTSLQYIWLHDN 507
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 127 CLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCL--ANLTSLRV 184
C + +S LN N T + G L L+ L + N L+ + L N++SL
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407
Query: 185 LDVSYNQLTENISSSPLMHLTSIEELILSNN 215
LDVS N L + SI L LS+N
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 46/265 (17%)
Query: 346 EIGTYLPGLMH----LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
EI TY H L + NA P F ++ +L L + N L+ ++P +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141
Query: 402 SLEILALSNNTLQGHIFSEKFNLT-NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 460
L L++SNN L+ I + F T +L+ LQL N+ LS L +S N
Sbjct: 142 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197
Query: 461 LSG-KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519
LS IP + L A + I N + GP+ E L +L L +N++ T
Sbjct: 198 LSTLAIPIAVEELDASHNSI---NVVRGPVNVE------LTILKLQHNNLTDT------- 241
Query: 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
+ + YP LV +DLSYN L + + K+ +L + ++NN
Sbjct: 242 ------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 580 IEGEIPVQLCQLKEVRLIDLSHNNL 604
+ + + + ++++DLSHN+L
Sbjct: 284 LVA-LNLYGQPIPTLKVLDLSHNHL 307
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 97/244 (39%), Gaps = 46/244 (18%)
Query: 292 GEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL 351
P + N L TL ++NN+L L L +S+N L H+ + + +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSL---I 185
Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE--ILALS 409
P L H N+S N S+ A ++ LD S+N + + G ++E IL L
Sbjct: 186 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN------VVRGPVNVELTILKLQ 234
Query: 410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWL 469
+N L + N L + L N+ + K L LY+S+N
Sbjct: 235 HNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN---------- 282
Query: 470 GSLLALQDIIMPNNNLEG-PIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLS 528
L+AL NL G PIP LKVLDLS+N + + +E ++L
Sbjct: 283 -RLVAL--------NLYGQPIP-------TLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326
Query: 529 KNKI 532
N I
Sbjct: 327 HNSI 330
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNN 411
PGL+ ++LS N + F M+ L+ L IS N+L +L++L LS+N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHN 305
Query: 412 TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
L H+ + L+ L LD N + LS + L L LS N
Sbjct: 306 HL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 349
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNND 167
V L L ++ N+L D+ W L N L ++++ N+L F ++ L LYI NN
Sbjct: 226 VELTILKLQHNNLTDTA-WLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 168 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215
L +L L + +L+VLD+S+N L + P +E L L +N
Sbjct: 284 L-VALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDHN 328
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 29/214 (13%)
Query: 343 IPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402
I V +L L L LSRN +F + L +L++ N+LT IP +
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSK 137
Query: 403 LEILALSNNTLQGHIFSEKFN-LTNLKRLQLDGNKFIGEIPE------------SLSKCY 449
L+ L L NN ++ I S FN + +L+RL L K + I E +L+ C
Sbjct: 138 LKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 450 L-----------LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC 498
L L L LS NHLS P L+ LQ + M + ++ N F L
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 499 LKVLDLSNNSIFGTLPSCL--SLGSIEQVHLSKN 530
L ++L++N++ LP L L +E++HL N
Sbjct: 257 LVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHN 289
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L HL+ L + N +R + + +L L + N+LT F L L+EL++ NN
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 167 DLRGSLPLCLANLTSLRVLD------VSY---------------NQLTENISSSP-LMHL 204
+ + SLR LD +SY N N+ P L L
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL 206
Query: 205 TSIEELILSNNHFQI--PISLEPLFNLSKLKTFNGEIYAETESHYNSL 250
++EL LS NH P S + L +L KL +I + +++L
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 284 DLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHI 343
DLSH NLS W P T+L +LLL++N L + L LD+S+N L +
Sbjct: 45 DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTL 103
Query: 344 PVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMG--CF 401
+ + L L L L N ++F DM L+ L +S NQ++ E + G
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 402 SLEILALSNNTLQGHIFSEKFNLTNLKRL 430
L +L LS+N L+ K LT+L++L
Sbjct: 164 KLMLLDLSSNKLK------KLPLTDLQKL 186
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 113 LYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL 172
L++ +N L L L T L LN+ +LT G L +L L + +N L+ SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQ-SL 92
Query: 173 PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLS 230
PL L +L VLDVS+N+LT ++ L L ++EL L N + P L P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 KLKTFNGEI 239
KL N ++
Sbjct: 152 KLSLANNDL 160
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 98 TILDQGLCELVHLQ---------ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF 148
T L+ CEL LQ L + N L+ SL + +L VL+V+ N+LT +
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 149 PPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
P G L L+ELY+ N+L+ P L L L ++ N LTE + + L L ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE-LPAGLLNGLENL 174
Query: 208 EELILSNNH-FQIP 220
+ L+L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV---LGTLD---LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++N+L+ +P L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLN 169
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 35/262 (13%)
Query: 166 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ-IP--IS 222
N L G LP + L L+++YNQ+TE I ++ +E L ++N + IP
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFD 397
Query: 223 LEPLFNLSKLKTFNGEIYAETESHYNSLTPK----FQLTSISLSGYGDGGTFPKFLYHQH 278
+ + S + EI + +++ L P ++SI+LS FPK L+
Sbjct: 398 AKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN-NQISKFPKELFS-- 454
Query: 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNF 338
+ LS +NL G +P+N+ + N L S + + L KL S++F
Sbjct: 455 --TGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-----SDDF 507
Query: 339 FLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL------DISYNQLTGAI 392
T LP L+ ++LS N+F+ P+ + LK D N+
Sbjct: 508 R--------ATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 393 PERMAMGCFSLEILALSNNTLQ 414
PE + + C SL L + +N ++
Sbjct: 559 PEGITL-CPSLTQLQIGSNDIR 579
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 677 LSC--NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL-KQIESLDLSYNLLH 731
L C N+L G++P G ++ +LNL++N +T IP F +Q+E+L ++N L
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 695 RIRALNLSHNNL-TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNN 753
+I+ + + +NNL T + T+ K++ L+ YN L GK+P + LA +AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASLNLAYNQ 364
Query: 754 LSGKIPDRVAQFSTFEE 770
++ +IP A F F E
Sbjct: 365 IT-EIP---ANFCGFTE 377
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 33/292 (11%)
Query: 132 TSLQVLNVASNQLTGNFPPG-FCELVLLRELYIDNNDL--RGSLPLCLANLTSLRVLDVS 188
+S L + SN+L + P G F +L L +L + +N L +G TSL+ LD+S
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 189 YNQLTENISSSPLMHLTSIEELILSNNH------FQIPISLEPLFNLSKLKT-----FNG 237
+N + SS + L +E L +++ F + +SL L L T FNG
Sbjct: 87 FNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 238 EIYAETESHYNSLTPKFQLTSISLSGYGDGGTF-PKFLYHQHDLNNADLSHLNLSGEFPN 296
+N L+ L + ++G F P +L DLS L P
Sbjct: 145 I--------FNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 297 WLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMH 356
+ + L+ L +++N+ F P CL L LD S N + E+ + L
Sbjct: 194 AF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252
Query: 357 LNLSRNAFNGSIP-SSFAD-MKMLKSLDISYNQLTGAIP-ERMAMGCFSLEI 405
LNL++N F + SF +K + L + ++ A P ++ M SL I
Sbjct: 253 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 304
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
L +++ +DLS +L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGN--KFIGEIPESLSKCYLLGGLYLSDNHLSG 463
L SNN L +F +LT L+ L L N K + +I E ++ L L +S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 464 KIPR----WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519
+ W SLL+L M +N L I C +KVLDL +N I + L
Sbjct: 389 DEKKGDCSWTKSLLSLN---MSSNILTDTIFR--CLPPRIKVLDLHSNKIKSIPKQVVKL 443
Query: 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP------NWIDKLPQ 569
++++++++ N+++ + I L + L N S P W++K Q
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 499
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 727
LTS+ + KL IG L ++ LN++HN + + +P FSNL + +DLSY
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 728 NLLHGKIPPQLIVLNTLAVFR 748
N + Q I +N L R
Sbjct: 163 NYI------QTITVNDLQFLR 177
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D+ L HL L + N ++ + +TSL+ L +L +FP G +L
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QL 127
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYN 190
+ L++L + +N + LP +NLT+L +D+SYN
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 43/241 (17%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKM--LKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
LP L +L+LSRNA + S S++D+ L+ LD+S+N GAI M+ LE L
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAII--MSANFMGLEELQ- 402
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPR- 467
H+ F + LKR + E LS L LYL ++ + KI
Sbjct: 403 -------HL---DFQHSTLKR--------VTEFSAFLS---LEKLLYLDISYTNTKIDFD 441
Query: 468 --WLGSLLALQDIIMPNNNL-EGPIPNEFCQLDCLKVLDLSNNSI----FGTLPSCLSLG 520
+LG L +L + M N+ + + N F L LDLS + +G +L
Sbjct: 442 GIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD---TLH 497
Query: 521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ-LSYILLANNY 579
++ +++S N + S + L TLD S+NR+ S + P+ L++ L NN
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNS 556
Query: 580 I 580
+
Sbjct: 557 V 557
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 66/175 (37%), Gaps = 24/175 (13%)
Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDN 165
L HL+ L + N +R + + SL L + N LT F L LREL++ N
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 166 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP----------------------LMH 203
N + + SL LD+ + E IS L
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP 216
Query: 204 LTSIEELILSNNHFQ--IPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQL 256
L +EEL +S NHF P S L +L KL N ++ + ++ L +L
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 5/204 (2%)
Query: 305 LKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAF 364
L+ L L NS+ + L L TL++ +N+ L IP YL L L L N
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPI 159
Query: 365 NGSIPS-SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN 423
SIPS +F + L LD+ + I E G F+L+ L L ++
Sbjct: 160 E-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTP 216
Query: 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483
L L+ L++ GN F P S L L++ ++ +S L +L ++ + +N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 484 NLEGPIPNEFCQLDCLKVLDLSNN 507
NL + F L L L L +N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 693 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYN 752
LT + LNL+HN L F L + LDLSYN L L L R+ N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 753 NLSGKIPDRV-AQFSTFEEDSYEGNPFLCGLP 783
L +PD V + ++ + NP+ C P
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 103 GLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLREL 161
L EL +L L + N L+ +T+L+ L + NQL + P G F +L L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL 138
Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
+ +N L+ LT+L LD+SYNQL +++ LT +++L L N +
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLD----VSNNFFLGHIPVEIGTYLPGLMHLN 358
T+L L+L N L +P KL L V N L +P + L L +LN
Sbjct: 85 TNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQ--LQSLPDGVFDKLTNLTYLN 139
Query: 359 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF 418
L+ N F + L LD+SYNQL ++PE + L+ L L N L+
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD--NHLSGKIPRWLGSL 472
LT+L+ + L N + C G YLS+ N SG + GS+
Sbjct: 199 GVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAGSV 245
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 469 LGSLLALQDIIMPNNNLEGPIPNE-FCQLDCLKVLDLSNNSIFGTLPSCL--SLGSIEQV 525
L L L +I+ N L+ +PN F +L LK L L N + +LP + L ++ +
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYL 138
Query: 526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIE 581
+L+ N+++ + + L LDLSYN+L S+P + DKL QL + L N ++
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL-TGTIPTTFSNLKQIESLDLSY 727
LTS+ + KL IG L ++ LN++HN + + +P FSNL + +DLSY
Sbjct: 98 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Query: 728 NLLHGKIPPQLIVLNTLAVFR 748
N + Q I +N L R
Sbjct: 158 NYI------QTITVNDLQFLR 172
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 98 TILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG--NFPPGFCEL 155
TI D+ L HL L + N ++ + +TSL+ L +L +FP G +L
Sbjct: 65 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QL 122
Query: 156 VLLRELYIDNNDLRG-SLPLCLANLTSLRVLDVSYN 190
+ L++L + +N + LP +NLT+L +D+SYN
Sbjct: 123 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 43/241 (17%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKM--LKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
LP L +L+LSRNA + S S++D+ L+ LD+S+N GAI M+ LE L
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---GAII--MSANFMGLEELQ- 397
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPR- 467
H+ F + LKR + E LS L LYL ++ + KI
Sbjct: 398 -------HL---DFQHSTLKR--------VTEFSAFLS---LEKLLYLDISYTNTKIDFD 436
Query: 468 --WLGSLLALQDIIMPNNNL-EGPIPNEFCQLDCLKVLDLSNNSI----FGTLPSCLSLG 520
+LG L +L + M N+ + + N F L LDLS + +G +L
Sbjct: 437 GIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD---TLH 492
Query: 521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ-LSYILLANNY 579
++ +++S N + S + L TLD S+NR+ S + P+ L++ L NN
Sbjct: 493 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNS 551
Query: 580 I 580
+
Sbjct: 552 V 552
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 113 LYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL 172
L++ +N L L L T L LN+ +LT G L +L L + +N L+ SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SL 92
Query: 173 PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLS 230
PL L +L VLDVS+N+LT ++ L L ++EL L N + P L P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 KLKTFN 236
KL N
Sbjct: 152 KLSLAN 157
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV---LGTLD---LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++NNL+ +P L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 131 MTSLQVLNVASNQLTGNFPPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
+ +L VL+V+ N+LT + P G L L+ELY+ N+L+ P L L L ++
Sbjct: 99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 190 NQLTENISSSPLMHLTSIEELILSNNH-FQIP 220
N LTE + + L L +++ L+L N + IP
Sbjct: 158 NNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 354 LMHLNLSRNAF-----NGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
L LNL R +G++P +L +LD+S+NQL ++P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDV 107
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
S N L L L+ L L GN+ P L+ L L L++N+L+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 469 LGSLLALQDIIMPNNNLEGPIPNEF 493
L L L +++ N+L IP F
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGF 191
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 58/271 (21%)
Query: 346 EIGTYLPGLMH----LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF 401
EI TY H L + NA P F ++ +L L + N L+ ++P +
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147
Query: 402 SLEILALSNNTLQGHIFSEKFNLT-NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 460
L L++SNN L+ I + F T +L+ LQL N+ LS L +S N
Sbjct: 148 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203
Query: 461 LSG-KIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519
LS IP + L A + I N + GP+ E L +L L +N++ T
Sbjct: 204 LSTLAIPIAVEELDASHNSI---NVVRGPVNVE------LTILKLQHNNLTDT------- 247
Query: 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579
+ + YP LV +DLSYN L + + K+ +L + ++NN
Sbjct: 248 ------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 580 IEG------EIPVQLCQLKEVRLIDLSHNNL 604
+ IP ++++DLSHN+L
Sbjct: 290 LVALNLYGQPIPT-------LKVLDLSHNHL 313
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 97/242 (40%), Gaps = 46/242 (19%)
Query: 294 FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPG 353
P + N L TL ++NN+L L L +S+N L H+ + + +P
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSL---IPS 193
Query: 354 LMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE--ILALSNN 411
L H N+S N S+ A ++ LD S+N + + G ++E IL L +N
Sbjct: 194 LFHANVSYNLL-----STLAIPIAVEELDASHNSIN------VVRGPVNVELTILKLQHN 242
Query: 412 TLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGS 471
L + N L + L N+ + K L LY+S+N L
Sbjct: 243 NLTDTAWL--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---------- 290
Query: 472 LLALQDIIMPNNNLEG-PIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKN 530
+AL NL G PIP LKVLDLS+N + + +E ++L N
Sbjct: 291 -VAL--------NLYGQPIP-------TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334
Query: 531 KI 532
I
Sbjct: 335 SI 336
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG------AIPERMAMGCFSLEI 405
PGL+ ++LS N + F M+ L+ L IS N+L IP +L++
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKV 305
Query: 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459
L LS+N L H+ + L+ L LD N + LS + L L LS N
Sbjct: 306 LDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 355
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNND 167
V L L ++ N+L D+ W L N L ++++ N+L F ++ L LYI NN
Sbjct: 232 VELTILKLQHNNLTDTA-WLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 168 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215
L +L L + +L+VLD+S+N L + P +E L L +N
Sbjct: 290 L-VALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDHN 334
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 113 LYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL 172
L++ +N L L L T L LN+ +LT G L +L L + +N L+ SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SL 92
Query: 173 PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLS 230
PL L +L VLDVS+N+LT ++ L L ++EL L N + P L P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 KLKTFN 236
KL N
Sbjct: 152 KLSLAN 157
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV---LGTLD---LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++NNL+ +P L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 131 MTSLQVLNVASNQLTGNFPPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
+ +L VL+V+ N+LT + P G L L+ELY+ N+L+ P L L L ++
Sbjct: 99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 190 NQLTENISSSPLMHLTSIEELILSNNH-FQIP 220
N LTE + + L L +++ L+L N + IP
Sbjct: 158 NNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 354 LMHLNLSRNAF-----NGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
L LNL R +G++P +L +LD+S+NQL ++P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDV 107
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
S N L L L+ L L GN+ P L+ L L L++N+L+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 469 LGSLLALQDIIMPNNNLEGPIPNEF 493
L L L +++ N+L IP F
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGF 191
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 118/278 (42%), Gaps = 51/278 (18%)
Query: 329 LATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQL 388
L TL + +N L IP+ + T L L L++S N + F D+ LKSL++ N L
Sbjct: 82 LRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 389 TGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKC 448
I R G SLE L L EK NLT++ E+LS
Sbjct: 141 V-YISHRAFSGLNSLEQLTL-----------EKCNLTSIP-------------TEALS-- 173
Query: 449 YLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNS 508
+L G + L HL ++ A++D F +L LKVL++S+
Sbjct: 174 HLHGLIVLRLRHL---------NINAIRDY-------------SFKRLYRLKVLEISHWP 211
Query: 509 IFGTL-PSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKL 567
T+ P+CL ++ + ++ + + + YL L+LSYN + + + +L
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 568 PQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605
+L I L + P L +R++++S N L+
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 128 LANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDV 187
+ ++ L+ LN++ N ++ EL+ L+E+ + L P L LRVL+V
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303
Query: 188 SYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGE 238
S NQLT + S + ++E LIL +N L +F FN +
Sbjct: 304 SGNQLT-TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQ 353
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 24/168 (14%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L HL+ L + N +R + + SL L + N+LT F L LREL++ NN
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP----------------------LMHL 204
+ + SLR LD+ + E IS + L L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 205 TSIEELILSNNHFQI--PISLEPLFNLSKLKTFNGEIYAETESHYNSL 250
+EEL LS N + P S + L +L KL + ++ + ++ L
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 326 LQKLATLDVSNNFFLGHIPVEIGTY--LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDI 383
L+ L L +S N +E+G + LP L L L N +F + L+ L +
Sbjct: 58 LRHLEILQLSKNLVRK---IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 384 SYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN-LTNLKRLQLDGNKFIGEIP 442
N + +IP SL L L +I F L NL+ L L G + +IP
Sbjct: 115 RNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIP 172
Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
+L+ L L LS N L P L +L+ + + + + N F L L+ L
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 503 DLSNNSIFGTLPSCL--SLGSIEQVHLSKN 530
+LS+N++ +LP L L +E+VHL+ N
Sbjct: 232 NLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 31/210 (14%)
Query: 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN 578
L +E + LSKN + + P L TL+L NRL + L +L + L NN
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 579 YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALS 638
IE ++ +R +DL +I SE ++ + L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYI---------SEAAFEGLV---------NLR 159
Query: 639 YFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 698
Y N+ L + ++LS N+L P LT +R
Sbjct: 160 YL-------------NLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 699 LNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
L L H + F +LK +E L+LS+N
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 113 LYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL 172
L++ +N L L L T L LN+ +LT G L +L L + +N L+ SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SL 92
Query: 173 PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLS 230
PL L +L VLDVS+N+LT ++ L L ++EL L N + P L P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 KLKTFN 236
KL N
Sbjct: 152 KLSLAN 157
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV---LGTLD---LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++NNL+ +P L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 131 MTSLQVLNVASNQLTGNFPPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSY 189
+ +L VL+V+ N+LT + P G L L+ELY+ N+L+ P L L L ++
Sbjct: 99 LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 190 NQLTENISSSPLMHLTSIEELILSNNH-FQIP 220
N LTE + + L L +++ L+L N + IP
Sbjct: 158 NNLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 354 LMHLNLSRNAF-----NGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILAL 408
L LNL R +G++P +L +LD+S+NQL ++P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDV 107
Query: 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRW 468
S N L L L+ L L GN+ P L+ L L L++N+L+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 469 LGSLLALQDIIMPNNNLEGPIPNEF 493
L L L +++ N+L IP F
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGF 191
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 24/168 (14%)
Query: 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166
L HL+ L + N +R + + SL L + N+LT F L LREL++ NN
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSP----------------------LMHL 204
+ + SLR LD+ + E IS + L L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 205 TSIEELILSNNHFQI--PISLEPLFNLSKLKTFNGEIYAETESHYNSL 250
+EEL LS N + P S + L +L KL + ++ + ++ L
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 326 LQKLATLDVSNNFFLGHIPVEIGTY--LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDI 383
L+ L L +S N +E+G + LP L L L N +F + L+ L +
Sbjct: 58 LRHLEILQLSKNLVRK---IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 384 SYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFN-LTNLKRLQLDGNKFIGEIP 442
N + +IP SL L L +I F L NL+ L L G + +IP
Sbjct: 115 RNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIP 172
Query: 443 ESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502
+L+ L L LS N L P L +L+ + + + + N F L L+ L
Sbjct: 173 -NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 503 DLSNNSIFGTLPSCL--SLGSIEQVHLSKN 530
+LS+N++ +LP L L +E+VHL+ N
Sbjct: 232 NLSHNNLM-SLPHDLFTPLHRLERVHLNHN 260
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 31/210 (14%)
Query: 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN 578
L +E + LSKN + + P L TL+L NRL + L +L + L NN
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 579 YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALS 638
IE ++ +R +DL +I SE ++ + L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYI---------SEAAFEGLV---------NLR 159
Query: 639 YFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRA 698
Y + N+ L + ++LS N+L P LT +R
Sbjct: 160 Y-------------LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 699 LNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728
L L H + F +LK +E L+LS+N
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 684 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP----QLI 739
E+P I TR LNL N++ TF +L+ +E L LS NL+ KI L
Sbjct: 27 AEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLP 83
Query: 740 VLNTLAVFRVAYNNLSGKIPDRVAQF-STFEEDSYEGNPF 778
LNTL +F +N +P + ++ S E NP
Sbjct: 84 SLNTLELF----DNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 36/95 (37%)
Query: 691 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750
G L + L L N LTG P F I+ L L N + + L+ L +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785
N +S +P ++ + NPF C L+
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 113 LYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL 172
L++ +N L L L T L LN+ +LT G L +L L + +N L+ SL
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQ-SL 93
Query: 173 PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLS 230
PL L +L VLDVS+N+LT ++ L L ++EL L N + P L P L
Sbjct: 94 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 231 KLKTFNGEI 239
KL N +
Sbjct: 153 KLSLANNNL 161
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 67 ELTKLQVDGTLPV---LGTLD---LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 119
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++NNL+ +P L+N
Sbjct: 120 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 170
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 98 TILDQGLCELVHLQ---------ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF 148
T L+ CEL LQ L + N L+ SL + +L VL+V+ N+LT +
Sbjct: 59 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 116
Query: 149 PPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
P G L L+ELY+ N+L+ P L L L ++ N LTE + + L L ++
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 175
Query: 208 EELILSNNH-FQIP 220
+ L+L N + IP
Sbjct: 176 DTLLLQENSLYTIP 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 113 LYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL 172
L++ +N L L L T L LN+ +LT G L +L L + +N L+ SL
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQ-SL 92
Query: 173 PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI--PISLEPLFNLS 230
PL L +L VLDVS+N+LT ++ L L ++EL L N + P L P L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 KLKTFNGEI 239
KL N +
Sbjct: 152 KLSLANNNL 160
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV---LGTLD---LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++NNL+ +P L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 98 TILDQGLCELVHLQ---------ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF 148
T L+ CEL LQ L + N L+ SL + +L VL+V+ N+LT +
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 149 PPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
P G L L+ELY+ N+L+ P L L L ++ N LTE + + L L ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL 174
Query: 208 EELILSNNH-FQIP 220
+ L+L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 103 GLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELY 162
+ L ++ L + + D + LA +++LQVL + NQ+T P L L+ L
Sbjct: 102 AIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157
Query: 163 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPIS 222
I N + P LANL+ L L N++++ SPL L ++ E+ L NN
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQIS---D 209
Query: 223 LEPLFNLSKL 232
+ PL N S L
Sbjct: 210 VSPLANTSNL 219
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 19/199 (9%)
Query: 314 SLFGSFRMPIHCLQ---KLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS 370
S FG+ I +Q L L++ +N P++ L + L LS N S
Sbjct: 47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK---NLTKITELELSGNPLKNV--S 101
Query: 371 SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL 430
+ A ++ +K+LD++ Q+T P G +L++L L N + S LTNL+ L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYL 156
Query: 431 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP 490
+ GN + ++ L+ L L DN +S P L SL L ++ + NN + P
Sbjct: 157 SI-GNAQVSDL-TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Query: 491 NEFCQLDCLKVLDLSNNSI 509
L ++ L+N +I
Sbjct: 213 --LANTSNLFIVTLTNQTI 229
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 30/123 (24%)
Query: 137 LNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-- 194
L + NQ+T P L + EL + N L+ +A L S++ LD++ Q+T+
Sbjct: 68 LELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVT 123
Query: 195 -------------------NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF 235
NI SPL LT+++ L + N L PL NLSKL T
Sbjct: 124 PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTL 178
Query: 236 NGE 238
+
Sbjct: 179 KAD 181
>pdb|4AMU|A Chain A, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|B Chain B, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|C Chain C, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4AMU|D Chain D, Structure Of Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P321 Space Group
pdb|4ANF|A Chain A, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|B Chain B, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|C Chain C, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
pdb|4ANF|D Chain D, Structure Of The Ornithine Carbamoyltransferase From
Mycoplasma Penetrans With A P23 Space Group
Length = 365
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRG-----------RILTSMSGIDLSCNKL 682
++Y P+GS MGK+E+++ T K + +Y G L SG+ +
Sbjct: 97 GAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFAQSDVDALVKYSGVPVWNGLT 156
Query: 683 TGEIPTQI 690
E PTQI
Sbjct: 157 DDEHPTQI 164
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLRELYID 164
+L +L+EL + +N L+ +T+L L + NQL P G F +L L L +D
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLD 165
Query: 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPIS 222
NN L+ LT L+ L ++ NQL +++ LTS+ + L NN + S
Sbjct: 166 NNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNNPWDCACS 222
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
L L +L L+ N F + LK L + NQL ++P+ + +L L L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLSGKIPRWL 469
N LQ LTNL RL LD N+ + +PE + K L L L+DN L
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 470 GSLLALQDIIMPNN 483
L +L I + NN
Sbjct: 202 DRLTSLTHIWLLNN 215
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 103 GLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPG-FCELVLLREL 161
L EL +L L + N L+ +T+L+ L + NQL P G F +L L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYL 138
Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218
Y+ +N L+ LT+L LD+ NQL +++ LT +++L L++N +
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 98 TILDQGLCELVHLQ---------ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF 148
T L+ CEL LQ L + N L+ SL + +L VL+V+ N+LT +
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 149 PPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
P G L L+ELY+ N+L+ P L L L ++ NQLTE + + L L ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENL 174
Query: 208 EELILSNNH-FQIP 220
+ L+L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 345 VEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE 404
+++ LP L L+LS N S+P + L LD+S+N+LT ++P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127
Query: 405 ILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
L L N L+ L++L L N+ E+P L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV---LGTLD---LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++N L+ +P L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLN 169
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 98 TILDQGLCELVHLQ---------ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF 148
T L+ CEL LQ L + N L+ SL + +L VL+V+ N+LT +
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 149 PPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
P G L L+ELY+ N+L+ P L L L ++ NQLTE + + L L ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENL 174
Query: 208 EELILSNNH-FQIP 220
+ L+L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 345 VEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE 404
+++ LP L L+LS N S+P + L LD+S+N+LT ++P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127
Query: 405 ILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
L L N L+ L++L L N+ E+P L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGL 167
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 98 TILDQGLCELVHLQ---------ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF 148
T L+ CEL LQ L + N L+ SL + +L VL+V+ N+LT +
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 149 PPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
P G L L+ELY+ N+L+ P L L L ++ NQLTE + + L L ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENL 174
Query: 208 EELILSNNH-FQIP 220
+ L+L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 345 VEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE 404
+++ LP L L+LS N S+P + L LD+S+N+LT ++P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127
Query: 405 ILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
L L N L+ L++L L N+ + E+P L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGL 167
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 503 DLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562
+L+ + GTLP LG+++ LS N+++ L + P L LD+S+NRL
Sbjct: 66 ELTKLQVDGTLPV---LGTLD---LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614
+ L +L + L N ++ P L ++ + L++N L+ +P L+N
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLN 169
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 98 TILDQGLCELVHLQ---------ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF 148
T L+ CEL LQ L + N L+ SL + +L VL+V+ N+LT +
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 149 PPGFCE-LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSI 207
P G L L+ELY+ N+L+ P L L L ++ NQLTE + + L L ++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENL 174
Query: 208 EELILSNNH-FQIP 220
+ L+L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 345 VEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE 404
+++ LP L L+LS N S+P + L LD+S+N+LT ++P G L+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127
Query: 405 ILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESL 445
L L N L+ L++L L N+ + E+P L
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGL 167
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%)
Query: 686 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA 745
+P ++ + ++LS+N ++ +FSN+ Q+ +L LSYN L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 746 VFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 780
+ + N++S S + NP C
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 336 NNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER 395
N F L +P E+ Y L ++LS N + SF++M L +L +SYN+L IP R
Sbjct: 41 NQFTL--VPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPR 96
Query: 396 MAMGCFSLEILALSNNTL 413
G SL +L+L N +
Sbjct: 97 TFDGLKSLRLLSLHGNDI 114
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
++ +DLS N++T + + ++AL L+ N + +FS+L +E LDLSYN L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 497 DCLKVLDLSNNSIF----GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552
+ +K LDLSNN I L C++L + + L+ N I E L LDLS
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNL---QALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 553 YNRLHGSIPNWIDKLPQLSYI-LLANNY 579
YN L +W L L+++ LL N Y
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730
++ +DLS N++T + + ++AL L+ N + +FS+L +E LDLSYN L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 497 DCLKVLDLSNNSIF----GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552
+ +K LDLSNN I L C++L + + L+ N I E L LDLS
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNL---QALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 553 YNRLHGSIPNWIDKLPQLSYI-LLANNY 579
YN L +W L L+++ LL N Y
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 317 GSFRMPIHCLQKLATLDVSNNFF--LGHIPVEIGTYLP-GLMHLNLSRNAFNGSIPSSFA 373
GS P C SNN G EI T LP + + L +N P +F+
Sbjct: 1 GSLHCPAAC-------TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS 53
Query: 374 DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTL 413
K L+ +D+S NQ++ P+ G SL L L N +
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 317 GSFRMPIHCLQKLATLDVSNNFF--LGHIPVEIGTYLP-GLMHLNLSRNAFNGSIPSSFA 373
GS P C SNN G EI T LP + + L +N P +F+
Sbjct: 1 GSLHCPAAC-------TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS 53
Query: 374 DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTL 413
K L+ +D+S NQ++ P+ G SL L L N +
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKI 92
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 35/239 (14%)
Query: 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNF 338
DL N ++ + G+F N +L TL+L NN + L KL L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKNL-----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 339 FLGHIPVEIGTYLPGL-MHLN----LSRNAFNG------------SIPSS------FADM 375
L +P ++ L L +H N + ++ FNG + SS F M
Sbjct: 112 -LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 376 KMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435
K L + I+ +T IP+ + SL L L N + + L NL +L L N
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 436 KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFC 494
SL+ L L+L++N L K+P L +Q + + NNN+ N+FC
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 101 DQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRE 160
D L +L + + I+D D + N+ +L L + +N+++ P F LV L
Sbjct: 53 DTALLDLQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPLVKLER 104
Query: 161 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 194
LY+ N L+ LP + +L+ L V N++T+
Sbjct: 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITK 135
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 35/239 (14%)
Query: 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNF 338
DL N ++ + G+F N +L TL+L NN + L KL L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKNL-----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 339 FLGHIPVEIGTYLPGL-MHLN----LSRNAFNG------------SIPSS------FADM 375
L +P ++ L L +H N + ++ FNG + SS F M
Sbjct: 112 -LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 376 KMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435
K L + I+ +T IP+ + SL L L N + + L NL +L L N
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 436 KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFC 494
SL+ L L+L++N L K+P L +Q + + NNN+ N+FC
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 101 DQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRE 160
D L +L + + I+D D + N+ +L L + +N+++ P F LV L
Sbjct: 53 DTALLDLQNNKITEIKDGDFK--------NLKNLHTLILINNKISKISPGAFAPLVKLER 104
Query: 161 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 194
LY+ N L+ LP + +L+ L V N++T+
Sbjct: 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITK 135
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
L L +L L NA +F D+ L L + N+++ ++PER G SL+ L L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG 470
N + H+ F +L RL LYL N+LS L
Sbjct: 187 NRV-AHVHPHAFR--DLGRLMT---------------------LYLFANNLSALPTEALA 222
Query: 471 SLLALQDIIMPNN 483
L ALQ + + +N
Sbjct: 223 PLRALQYLRLNDN 235
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 4/170 (2%)
Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSI-PSSFADMKMLKSLDISYNQLTGAIPERMAM 398
L I T L L L+LS NA + P++F + L +L + L P +
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPG-LFR 125
Query: 399 GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLS 457
G +L+ L L +N LQ + +L NL L L GN+ I +PE + + L L L
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPSVPEHAFRGLHSLDRLLLH 184
Query: 458 DNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNN 507
NH++ P L L + + NNL L L+ L L++N
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410
L L +L L NA +F D+ L L + N+++ ++PER G SL+ L L
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG 470
N + H+ F +L RL LYL N+LS L
Sbjct: 186 NRV-AHVHPHAFR--DLGRLMT---------------------LYLFANNLSALPTEALA 221
Query: 471 SLLALQDIIMPNN 483
L ALQ + + +N
Sbjct: 222 PLRALQYLRLNDN 234
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 39/162 (24%)
Query: 103 GLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTG-NFPPGFCELVLLREL 161
G+ +L+EL++ N + D L L ++T L+ L+V N+L N P C L L
Sbjct: 58 GMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKNLNGIPSAC----LSRL 111
Query: 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPI 221
++DNN+LR + L+HL ++E L + NN +
Sbjct: 112 FLDNNELR---------------------------DTDSLIHLKNLEILSIRNNKLK--- 141
Query: 222 SLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSG 263
S+ L LSKL+ +++ ++ LT ++ I L+G
Sbjct: 142 SIVMLGFLSKLEVL--DLHGNEITNTGGLTRLKKVNWIDLTG 181
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
T Q L + +NQ+T P F LV L++LY ++N L LT L LD++ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 192 LTENISSSPLMHLTSIEELILSNNHF 217
L ++I +L S+ + L NN +
Sbjct: 93 L-KSIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 309 LLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI 368
++ANNS S + I L L +L++SNN P++ YLP + L L+ N
Sbjct: 49 IIANNSDIKSVQG-IQYLPNLTSLNLSNNQITDISPIQ---YLPNVTKLFLNGNKLTDIK 104
Query: 369 PSSFADMKMLKSLDISYNQL-------------------TGAIPERMAMGCFSLEILALS 409
P A++K L L + N++ G + LE L L
Sbjct: 105 P--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 162
Query: 410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462
NN + + LT L L L+ N+ +P L+ L LYLS NH+S
Sbjct: 163 NNKITDITVLSR--LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 211
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
T+ QVL + NQ+T P F L L L +DNN L LT L L ++ NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPIS 222
L ++I +L S+ + L NN + S
Sbjct: 90 L-KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191
T+ QVL + NQ+T P F L L L +DNN L LT L L ++ NQ
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 192 LTENISSSPLMHLTSIEELILSNNHFQIPIS 222
L ++I +L S+ + L NN + S
Sbjct: 98 L-KSIPRGAFDNLKSLTHIWLLNNPWDCACS 127
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 131/308 (42%), Gaps = 47/308 (15%)
Query: 102 QGLCEL----VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVL 157
+GLCE+ ++LQ+ Y + + + C + LQ L++ + L+ P G L
Sbjct: 249 EGLCEMSVESINLQKHYFFN--ISSNTFHCFS---GLQELDLTATHLS-ELPSGLVGLST 302
Query: 158 LRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217
L++L + N + +N SL L + N + + L +L ++ EL LS++
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 218 QIPISLE-PLFNLSKLKT----FNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPK 272
+ L NLS L++ +N + +TE+ P+ +L ++ +
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTRLKVKDAQSP 420
Query: 273 FLYHQHDLNNADLSH--LNLSGE-FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKL 329
F + H L +LSH L++S E + LP L+ L L N P +QK
Sbjct: 421 F-QNLHLLKVLNLSHSLLDISSEQLFDGLPA----LQHLNLQGN------HFPKGNIQKT 469
Query: 330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT 389
+L LG + + L LS + +F +KM+ +D+S+N+LT
Sbjct: 470 NSLQT-----LGRLEI-----------LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
Query: 390 GAIPERMA 397
+ E ++
Sbjct: 514 SSSIEALS 521
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 340 LGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSS-FADMKMLKSLDISYNQLTGAIPERMAM 398
L HIP + T + L HL L N +PS F D++ L+S++ N+L +M
Sbjct: 135 LTHIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENLESIEFGSNKL-----RQMPR 187
Query: 399 GCF----SLEILALSNNTLQG---HIFSEKFNLTNLKRLQLDGNKFIGEIPE 443
G F L+ L L++N L+ IF LT+L+++ L N + P
Sbjct: 188 GIFGKMPKLKQLNLASNQLKSVPDGIFDR---LTSLQKIWLHTNPWDCSCPR 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,568,745
Number of Sequences: 62578
Number of extensions: 1072824
Number of successful extensions: 3270
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2011
Number of HSP's gapped (non-prelim): 730
length of query: 874
length of database: 14,973,337
effective HSP length: 107
effective length of query: 767
effective length of database: 8,277,491
effective search space: 6348835597
effective search space used: 6348835597
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)