Query 042603
Match_columns 874
No_of_seqs 614 out of 5419
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-62 3.5E-67 603.5 42.1 541 132-783 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-57 6.3E-62 557.0 41.4 519 156-783 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.7E-40 3.8E-45 341.3 5.8 377 353-786 79-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 2E-39 4.2E-44 333.6 7.6 275 303-580 173-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.6E-41 5.7E-46 332.6 -15.6 513 107-776 44-561 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 8.9E-39 1.9E-43 314.8 -10.8 480 56-612 46-546 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.1E-35 4.6E-40 320.6 -5.0 506 87-752 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 4.2E-35 9.2E-40 318.3 -4.2 483 10-555 3-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.2E-33 9E-38 288.7 -3.5 369 326-759 6-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.7E-32 5.8E-37 282.8 -1.4 385 301-750 5-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.2E-28 2.7E-33 243.4 -2.5 248 331-580 71-358 (498)
12 PLN03210 Resistant to P. syrin 99.9 7.6E-23 1.6E-27 251.5 26.2 339 321-729 552-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 3.8E-22 8.3E-27 245.3 26.7 342 343-753 549-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 3.8E-25 8.2E-30 218.9 -2.7 385 332-752 51-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 3.3E-21 7.1E-26 218.7 17.6 267 353-741 202-468 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.2E-20 2.7E-25 214.1 17.8 268 327-717 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 6E-19 1.3E-23 202.0 11.9 58 671-731 368-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.3E-18 5E-23 197.3 12.5 246 280-557 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.3E-23 187.3 3.3 89 690-778 217-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.4E-23 187.1 2.9 276 429-754 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 4.5E-18 9.7E-23 149.3 -3.0 170 512-741 25-195 (264)
22 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.7E-22 146.5 -4.5 179 542-780 31-213 (264)
23 PLN03150 hypothetical protein; 99.6 2E-15 4.3E-20 173.2 10.3 119 671-789 419-538 (623)
24 PLN03150 hypothetical protein; 99.2 2E-11 4.4E-16 140.3 9.6 113 593-759 419-532 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 1.9E-12 4.1E-17 135.5 -2.3 194 496-752 74-270 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.4E-17 137.2 -4.8 209 501-773 54-267 (722)
27 COG4886 Leucine-rich repeat (L 99.2 3.7E-11 8E-16 132.5 6.9 85 672-760 211-295 (394)
28 KOG3207 Beta-tubulin folding c 99.1 5.4E-12 1.2E-16 128.2 -0.2 191 26-218 117-314 (505)
29 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.2E-16 117.7 1.8 61 542-605 282-342 (490)
30 COG4886 Leucine-rich repeat (L 99.1 1E-10 2.2E-15 129.0 7.4 182 496-738 115-297 (394)
31 KOG1909 Ran GTPase-activating 99.1 1.6E-11 3.4E-16 121.6 -0.3 195 24-218 24-254 (382)
32 KOG1909 Ran GTPase-activating 99.1 3.8E-11 8.3E-16 118.9 1.7 215 3-217 56-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.0 3.2E-10 7E-15 105.9 4.5 127 79-212 16-147 (175)
34 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.3E-15 112.7 0.8 134 444-582 279-413 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 6.6E-10 1.4E-14 103.9 5.8 125 472-599 18-147 (175)
36 KOG3207 Beta-tubulin folding c 99.0 9.8E-11 2.1E-15 119.2 0.1 15 543-557 325-339 (505)
37 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.5E-14 83.8 3.7 60 671-730 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 1.7E-09 3.6E-14 82.9 3.1 61 694-754 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 2.7E-10 5.8E-15 125.6 -1.9 243 450-759 73-322 (414)
40 KOG0531 Protein phosphatase 1, 98.8 4.8E-10 1E-14 123.6 -0.4 242 470-778 69-317 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 5.3E-09 1.2E-13 122.8 4.0 108 107-216 544-653 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.9E-13 119.5 4.1 130 54-191 522-653 (889)
43 KOG1859 Leucine-rich repeat pr 98.7 3.9E-10 8.4E-15 121.5 -7.8 179 23-218 102-292 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.5E-09 3.3E-14 104.9 -3.7 158 6-166 186-348 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 1E-08 2.2E-13 110.9 -4.5 108 669-781 186-294 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-08 3.6E-13 97.9 -5.9 179 56-239 186-372 (419)
47 KOG2982 Uncharacterized conser 98.2 1.7E-07 3.6E-12 91.1 -0.4 109 109-217 46-158 (418)
48 KOG2982 Uncharacterized conser 98.1 4E-07 8.7E-12 88.5 -0.4 227 7-237 47-286 (418)
49 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.7E-12 79.7 -2.0 59 671-731 78-136 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.1 1.6E-06 3.5E-11 83.3 3.3 90 5-94 30-132 (388)
51 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 57.9 3.6 38 694-732 1-38 (44)
52 KOG3665 ZYG-1-like serine/thre 98.0 3.2E-06 6.9E-11 97.2 4.0 137 30-172 122-266 (699)
53 KOG4579 Leucine-rich repeat (L 98.0 4.8E-07 1E-11 77.6 -2.1 88 325-416 51-138 (177)
54 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 3.1E-10 55.7 3.0 39 670-709 1-39 (44)
55 KOG3665 ZYG-1-like serine/thre 97.8 8.2E-06 1.8E-10 93.8 1.7 136 81-219 121-264 (699)
56 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-05 2.7E-10 77.4 2.3 216 4-219 57-317 (388)
57 KOG4341 F-box protein containi 97.7 1.8E-06 3.9E-11 88.3 -3.8 111 30-142 138-252 (483)
58 PRK15386 type III secretion pr 97.7 9.7E-05 2.1E-09 78.1 7.7 73 519-604 51-124 (426)
59 KOG4341 F-box protein containi 97.7 5E-06 1.1E-10 85.2 -1.8 208 6-217 139-358 (483)
60 PF13306 LRR_5: Leucine rich r 97.6 0.00018 3.9E-09 65.1 7.5 110 294-410 3-112 (129)
61 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.3E-09 66.4 6.3 104 498-602 43-150 (233)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00028 6E-09 63.8 6.7 101 351-457 11-111 (129)
63 KOG1644 U2-associated snRNP A' 97.4 0.00028 6.1E-09 65.5 6.2 82 109-192 43-125 (233)
64 PRK15386 type III secretion pr 97.3 0.0009 2E-08 70.9 8.4 54 400-459 51-104 (426)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.3E-08 64.6 1.8 103 108-212 43-150 (260)
66 KOG1947 Leucine rich repeat pr 96.5 0.00041 8.8E-09 79.1 -1.8 63 351-413 242-307 (482)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0029 6.4E-08 61.7 3.1 110 3-118 41-153 (260)
68 KOG1947 Leucine rich repeat pr 96.3 0.0012 2.6E-08 75.3 0.5 136 3-140 186-329 (482)
69 KOG2123 Uncharacterized conser 96.2 0.00029 6.3E-09 68.5 -4.2 65 78-146 37-102 (388)
70 KOG2123 Uncharacterized conser 96.2 0.00044 9.5E-09 67.3 -3.2 84 327-416 19-103 (388)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0042 9.2E-08 35.8 1.2 19 696-715 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.6 0.0044 9.5E-08 35.7 0.5 21 719-740 1-21 (22)
73 KOG4308 LRR-containing protein 94.9 0.0004 8.6E-09 76.6 -9.8 88 131-218 203-303 (478)
74 KOG4308 LRR-containing protein 91.7 0.0037 8.1E-08 69.1 -8.8 188 7-194 89-304 (478)
75 smart00369 LRR_TYP Leucine-ric 91.1 0.16 3.5E-06 30.6 1.8 15 695-709 3-17 (26)
76 smart00370 LRR Leucine-rich re 91.1 0.16 3.5E-06 30.6 1.8 15 695-709 3-17 (26)
77 PF13504 LRR_7: Leucine rich r 90.8 0.13 2.9E-06 27.3 1.1 11 696-706 3-13 (17)
78 KOG0473 Leucine-rich repeat pr 90.0 0.011 2.4E-07 56.2 -5.9 81 671-754 43-123 (326)
79 KOG0473 Leucine-rich repeat pr 89.3 0.016 3.6E-07 55.2 -5.4 88 688-778 36-123 (326)
80 smart00369 LRR_TYP Leucine-ric 89.3 0.33 7.1E-06 29.2 2.1 19 717-735 1-19 (26)
81 smart00370 LRR Leucine-rich re 89.3 0.33 7.1E-06 29.2 2.1 19 717-735 1-19 (26)
82 PF13516 LRR_6: Leucine Rich r 87.1 0.23 5E-06 29.2 0.4 15 695-709 3-17 (24)
83 PF13516 LRR_6: Leucine Rich r 86.3 0.2 4.3E-06 29.5 -0.2 21 718-738 2-22 (24)
84 KOG3864 Uncharacterized conser 85.3 0.3 6.4E-06 46.1 0.4 85 6-93 102-187 (221)
85 TIGR00864 PCC polycystin catio 79.6 0.66 1.4E-05 60.5 0.5 38 748-785 1-38 (2740)
86 KOG3864 Uncharacterized conser 79.4 0.3 6.6E-06 46.0 -1.9 81 353-433 102-184 (221)
87 smart00365 LRR_SD22 Leucine-ri 77.8 2 4.3E-05 25.9 1.9 14 718-731 2-15 (26)
88 KOG3763 mRNA export factor TAP 67.4 4.1 8.9E-05 44.8 2.7 83 3-88 216-307 (585)
89 smart00364 LRR_BAC Leucine-ric 65.2 3.6 7.8E-05 24.7 1.0 13 695-707 3-15 (26)
90 smart00368 LRR_RI Leucine rich 64.1 5.7 0.00012 24.4 1.8 14 718-731 2-15 (28)
91 PF08693 SKG6: Transmembrane a 57.4 5 0.00011 26.9 0.7 26 818-843 13-38 (40)
92 KOG4242 Predicted myosin-I-bin 51.7 90 0.002 34.1 9.1 108 498-605 355-481 (553)
93 KOG4242 Predicted myosin-I-bin 47.9 70 0.0015 34.9 7.6 256 326-605 164-453 (553)
94 TIGR00864 PCC polycystin catio 36.2 22 0.00047 47.5 2.3 32 676-707 1-32 (2740)
95 smart00367 LRR_CC Leucine-rich 33.2 31 0.00067 20.5 1.5 11 30-40 2-12 (26)
96 KOG3763 mRNA export factor TAP 24.3 47 0.001 37.0 2.0 66 105-170 215-284 (585)
97 smart00082 LRRCT Leucine rich 23.3 32 0.0007 24.4 0.4 9 776-784 1-9 (51)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-62 Score=603.50 Aligned_cols=541 Identities=34% Similarity=0.503 Sum_probs=474.0
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccccc-CCCCCCEEEcccccccccCCccccCCCCCCCEE
Q 042603 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLA-NLTSLRVLDVSYNQLTENISSSPLMHLTSIEEL 210 (874)
Q Consensus 132 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 210 (874)
.+++.|++++|.+++..+..|..+++|++|++++|++.+.+|..+. .+++|++|+|++|++++.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 4688888888888877777888888888888888888766665543 778888888888887775554 345666666
Q ss_pred EccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCC
Q 042603 211 ILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL 290 (874)
Q Consensus 211 ~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 290 (874)
++++|.+. +.+|..++.+++|++|++++|.+
T Consensus 146 ~Ls~n~~~-------------------------------------------------~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 146 DLSNNMLS-------------------------------------------------GEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred ECcCCccc-------------------------------------------------ccCChHHhcCCCCCEEECccCcc
Confidence 66666543 44566677777888888888888
Q ss_pred cccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccch
Q 042603 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPS 370 (874)
Q Consensus 291 ~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~ 370 (874)
.+.+|..+ .++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|.
T Consensus 177 ~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 177 VGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccCh
Confidence 77777765 57888888888888888888888888889999999999888888877655 78999999999999888898
Q ss_pred hccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCC
Q 042603 371 SFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYL 450 (874)
Q Consensus 371 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 450 (874)
.+.++++|++|++++|.+++.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 999999999999999999888887765 4889999999999998888888888999999999999999888988999999
Q ss_pred CCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeC
Q 042603 451 LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSK 529 (874)
Q Consensus 451 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~ 529 (874)
|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++|++.+.+|..+. +++|+.|++++
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999988887654 88999999999
Q ss_pred cccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603 530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609 (874)
Q Consensus 530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (874)
|++++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC
Confidence 99999999999999999999999999999999999999999999999999998888765 46899999999999999888
Q ss_pred chhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcc
Q 042603 610 PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQ 689 (874)
Q Consensus 610 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 689 (874)
..+.++ ++|+.|++++|.+++.+|..
T Consensus 493 ~~~~~l------------------------------------------------------~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 493 RKLGSL------------------------------------------------------SELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred hhhhhh------------------------------------------------------hccCEEECcCCcceeeCChH
Confidence 776553 48899999999999999999
Q ss_pred ccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCC
Q 042603 690 IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFE 769 (874)
Q Consensus 690 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~ 769 (874)
++.+++|++|+|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|+.+++++|+++|.+|.. +++.++.
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~ 597 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAIN 597 (968)
T ss_pred HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 7889999
Q ss_pred cccccCCCCCCCCC
Q 042603 770 EDSYEGNPFLCGLP 783 (874)
Q Consensus 770 ~~~~~gNp~~C~~~ 783 (874)
..++.|||.+||.+
T Consensus 598 ~~~~~~n~~lc~~~ 611 (968)
T PLN00113 598 ASAVAGNIDLCGGD 611 (968)
T ss_pred hhhhcCCccccCCc
Confidence 99999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-57 Score=556.97 Aligned_cols=519 Identities=31% Similarity=0.486 Sum_probs=482.3
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCcee
Q 042603 156 VLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF 235 (874)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l 235 (874)
..++.|++++|.+.+..+..|..+++|++|+|++|++++.+|...+..+++|++|++++|.+.+.++.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------------ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR------------ 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc------------
Confidence 47899999999999999999999999999999999999888886677899999999999987643321
Q ss_pred ccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcc
Q 042603 236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL 315 (874)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l 315 (874)
+.+++|++|++++|.+.+.+|..+ +.+++|++|++++|.+
T Consensus 137 ---------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 137 ---------------------------------------GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVL 176 (968)
T ss_pred ---------------------------------------cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcc
Confidence 235678999999999998889876 7899999999999999
Q ss_pred cccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhH
Q 042603 316 FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER 395 (874)
Q Consensus 316 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 395 (874)
.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 9999999999999999999999999888887765 789999999999999999999999999999999999999888887
Q ss_pred HHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccC
Q 042603 396 MAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLAL 475 (874)
Q Consensus 396 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 475 (874)
+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 256 l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 256 LG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred Hh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 65 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603 476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554 (874)
Q Consensus 476 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n 554 (874)
+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+. +++|+.|++++|++++..|..+..+++|+.|++++|
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 9999999999999999999999999999999999998887664 789999999999999999999999999999999999
Q ss_pred cCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCC
Q 042603 555 RLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASA 634 (874)
Q Consensus 555 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~ 634 (874)
++++..|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------------------- 473 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------------- 473 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------------------
Confidence 99999999999999999999999999999999999999999999999999887775431
Q ss_pred CCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhc
Q 042603 635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTF 714 (874)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 714 (874)
.++|+.||+++|++++.+|..+..+++|+.|+|++|++++.+|+.+
T Consensus 474 ----------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 474 ----------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred ----------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence 2378899999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 715 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 715 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
+++++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|..+..+..+..+++.+|++.+..|
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988555
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-40 Score=341.29 Aligned_cols=377 Identities=22% Similarity=0.234 Sum_probs=306.2
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 432 (874)
.-+.|++++|.+....+..|.++++|+.+++.+|.++ .+|.... ...+++.|+|.+|.|+.+....+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4566777777777777777777777777777777777 6666443 2445777777777777777777777777888888
Q ss_pred cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512 (874)
Q Consensus 433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 512 (874)
+.|.++...-..|..-.++++|+|++|.++......|..+.+|..|.|++|+++...+..|.++++|+.|+|..|+|...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88877755555666666788888888888777777788888888888888888877777788888888888888887533
Q ss_pred -CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCC
Q 042603 513 -LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQL 591 (874)
Q Consensus 513 -~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 591 (874)
.-.+.++++|+.|.+..|+|.....++|..+.++++|+|+.|++...-..|+-++++|+.|+++.|.|..+.+++....
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 2233448888888888888888888899999999999999999998888899999999999999999998888888899
Q ss_pred CCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccC
Q 042603 592 KEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTS 671 (874)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (874)
++|+.|||++|+++.--+..+.- +..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~------------------------------------------------------L~~ 342 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRV------------------------------------------------------LSQ 342 (873)
T ss_pred ccceeEeccccccccCChhHHHH------------------------------------------------------HHH
Confidence 99999999999998433333332 347
Q ss_pred cceEEcCCCcccccCCccccccccCCeEecCCcccccchh---hhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603 672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR 748 (874)
Q Consensus 672 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ 748 (874)
|++|+|++|.++.....+|..+++|+.|||++|.++..+- ..|.+|++|+.|+|.+|+|..+...+|+.+..|+.||
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 8899999999998888889999999999999999998765 4588899999999999999988888999999999999
Q ss_pred ccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCCC
Q 042603 749 VAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSK 786 (874)
Q Consensus 749 ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~~ 786 (874)
+.+|.|...-|.+|.++ .++.+.+..-.++|+|++.|
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 99999998889988888 88888888888999887754
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-39 Score=333.59 Aligned_cols=275 Identities=24% Similarity=0.270 Sum_probs=243.1
Q ss_pred CCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEE
Q 042603 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382 (874)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 382 (874)
.++++|+|++|+|+......|.++.+|..|.|++|+++ .+|...|+.+|+|+.|+|..|.|.-.-.-.|.++++|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 45677777777777766677788888889999999988 89999998899999999999998855567899999999999
Q ss_pred cccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCC
Q 042603 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462 (874)
Q Consensus 383 l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 462 (874)
+..|.|. .+.++.|.++.++++|+|+.|+++..-...+.+++.|+.|+++.|.|...-+++...+++|++|+|++|+++
T Consensus 252 lqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 252 LQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 9999998 888888888999999999999999888888999999999999999999888888899999999999999999
Q ss_pred CCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC----CCCcccEEEeeCcccCccchh
Q 042603 463 GKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL----SLGSIEQVHLSKNKIEGQLES 538 (874)
Q Consensus 463 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~ 538 (874)
...+..|..+..|++|.|++|.+...-...|.++++|++|||++|.++..+.+.. .+++|+.|.+.+|++..+...
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 8888999999999999999999988778889999999999999999988776532 288999999999999999999
Q ss_pred hhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccC
Q 042603 539 IIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580 (874)
Q Consensus 539 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 580 (874)
+|.++++|+.|||.+|.|..+-|.+|..+ .|++|.+..-.+
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred hhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 99999999999999999998889999988 888888765443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-41 Score=332.65 Aligned_cols=513 Identities=27% Similarity=0.360 Sum_probs=333.5
Q ss_pred CCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEE
Q 042603 107 LVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLD 186 (874)
Q Consensus 107 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 186 (874)
-..|+.+.+++|.++.. ...+.++..|++|++++|+++ ..|++++.+..++.++.++|.++ .+|+.+..+.+|+.++
T Consensus 44 qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 35677888888887743 345777888888888888887 66777888888888888888887 6777788888888888
Q ss_pred cccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCC
Q 042603 187 VSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGD 266 (874)
Q Consensus 187 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 266 (874)
.++|.+.. ++. .++.+..|+.++..+|+++
T Consensus 121 ~s~n~~~e-l~~-~i~~~~~l~dl~~~~N~i~------------------------------------------------ 150 (565)
T KOG0472|consen 121 CSSNELKE-LPD-SIGRLLDLEDLDATNNQIS------------------------------------------------ 150 (565)
T ss_pred ccccceee-cCc-hHHHHhhhhhhhccccccc------------------------------------------------
Confidence 88888775 555 5677777777777666554
Q ss_pred CCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChh
Q 042603 267 GGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVE 346 (874)
Q Consensus 267 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~ 346 (874)
..|..+..+.++..+++.+|.+. ...+..+. ++.|+++|...|.+. .+|.+
T Consensus 151 --slp~~~~~~~~l~~l~~~~n~l~-------------------------~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~ 201 (565)
T KOG0472|consen 151 --SLPEDMVNLSKLSKLDLEGNKLK-------------------------ALPENHIA-MKRLKHLDCNSNLLE-TLPPE 201 (565)
T ss_pred --cCchHHHHHHHHHHhhccccchh-------------------------hCCHHHHH-HHHHHhcccchhhhh-cCChh
Confidence 12333444444444555555544 33333232 555666666666554 66666
Q ss_pred hhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCC
Q 042603 347 IGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTN 426 (874)
Q Consensus 347 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 426 (874)
++. +.+|+.|++.+|+|. ..| .|.+|..|+++.++.|+|. .+|....++++++..||+..|+++ ..|+.+.-+++
T Consensus 202 lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 202 LGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 654 566666666677666 445 5666666777777776666 666666666666666666666666 34455555566
Q ss_pred CCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc---CCeeecCCCcccccCCccccCCCCCCEEE
Q 042603 427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA---LQDIIMPNNNLEGPIPNEFCQLDCLKVLD 503 (874)
Q Consensus 427 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 503 (874)
|.+||+++|.++ ..|..++++ .|+.|-+.+|.+.. +.+.+-+... |++|.= .+. .+.++.-..=+.=
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~---~dglS~se~~~e~- 346 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIK---DDGLSQSEGGTET- 346 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhc---cCCCCCCcccccc-
Confidence 666666666665 445556666 56666666666542 2222211111 111110 000 0000000000000
Q ss_pred CcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCC--CCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603 504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYP--YLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581 (874)
Q Consensus 504 L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 581 (874)
......+..|......+.+.|++++-+++.++.+.|..-. -....+++.|++. ++|..+..++.+.+.-+..|+..
T Consensus 347 -~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 347 -AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred -cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 0001122334444466778888888888888877776543 3678899999988 67877776666655444444444
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcc
Q 042603 582 GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS 661 (874)
Q Consensus 582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (874)
+.+|..++.+++|..|+|++|.+. .+|..++.+.
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv--------------------------------------------- 458 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV--------------------------------------------- 458 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhhh---------------------------------------------
Confidence 588888899999999999988875 6777665532
Q ss_pred cccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603 662 YYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 741 (874)
Q Consensus 662 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 741 (874)
.|+.||+|.|+|. .+|+.+-.+..++.+-.++|++..+.|+.+.++.+|.+|||.+|.+. .+|+.++++
T Consensus 459 ---------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 459 ---------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred ---------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 6888999999988 88988888888888888889999888888999999999999999998 788889999
Q ss_pred CCCCeEEccCCCCcccCCCccccCCCCCcccccCC
Q 042603 742 NTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN 776 (874)
Q Consensus 742 ~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gN 776 (874)
++|+.|++++|+++ .++..+--..+...++|.++
T Consensus 528 tnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred cceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence 99999999999998 33332222233334444444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.9e-39 Score=314.84 Aligned_cols=480 Identities=25% Similarity=0.334 Sum_probs=331.0
Q ss_pred CCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCC
Q 042603 56 NLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSL 134 (874)
Q Consensus 56 ~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 134 (874)
-|..+++++|.+. .... +.++..|.+|++.+|++.. +|.+++.+..++.++.++|+++ .+|..++.+.+|
T Consensus 46 ~l~~lils~N~l~~l~~d-----l~nL~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l 116 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRED-----LKNLACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL 116 (565)
T ss_pred chhhhhhccCchhhccHh-----hhcccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh
Confidence 3455555555544 2222 4555666666666665554 4455566666666666666654 445555556666
Q ss_pred CEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccc
Q 042603 135 QVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSN 214 (874)
Q Consensus 135 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 214 (874)
+.++.++|.+. ..|++++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|++.. .|...+ +++.|++|+...
T Consensus 117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i-~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHI-AMKRLKHLDCNS 192 (565)
T ss_pred hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHH-HHHHHHhcccch
Confidence 66666666655 44555666666666666666655 345555566666666666666554 343222 255555555544
Q ss_pred cccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccC
Q 042603 215 NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEF 294 (874)
Q Consensus 215 n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 294 (874)
|.+ +.+|..++.+.+|..+++.+|.+. .+
T Consensus 193 N~L--------------------------------------------------~tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 193 NLL--------------------------------------------------ETLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred hhh--------------------------------------------------hcCChhhcchhhhHHHHhhhcccc-cC
Confidence 432 246777888888888899999887 67
Q ss_pred CcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccC
Q 042603 295 PNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFAD 374 (874)
Q Consensus 295 p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 374 (874)
|++ ..|+.|+++.++.|.+..........++++..||+.+|+++ ++|.++.- +.+|++||+++|.|+ ..|.++++
T Consensus 222 Pef--~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 222 PEF--PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CCC--CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCccccc
Confidence 753 68888999999999887666666668889999999999987 88888765 778999999999998 66778888
Q ss_pred CCCcCEEEcccCcCCCCchhHHHhcCC--CCCEEE-------cccCcc--------cccCCccccCCCCCCeEEccCCcC
Q 042603 375 MKMLKSLDISYNQLTGAIPERMAMGCF--SLEILA-------LSNNTL--------QGHIFSEKFNLTNLKRLQLDGNKF 437 (874)
Q Consensus 375 l~~L~~L~l~~n~i~~~~~~~~~~~~~--~L~~L~-------L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l 437 (874)
+ .|+.|-+.+|.+. ++-..+..+-+ -|++|. ++.-.- ............+.++|++++-++
T Consensus 297 l-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred c-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 8 8999999999876 44433322100 011111 111100 001111222456788899998888
Q ss_pred cccCCccccccCC---CCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCC
Q 042603 438 IGEIPESLSKCYL---LGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLP 514 (874)
Q Consensus 438 ~~~~~~~~~~~~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 514 (874)
+ .+|..+..... ....+++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|-+.....
T Consensus 375 t-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~ 452 (565)
T KOG0472|consen 375 T-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE 452 (565)
T ss_pred c-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence 7 55655443333 788999999998 788888777776554444444445788889999999999999998875444
Q ss_pred CCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCC
Q 042603 515 SCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEV 594 (874)
Q Consensus 515 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 594 (874)
+.+.+..|+.|+++.|++... |........++.+-.++|++....|+.+.++.+|.+|++.+|.+. .+|..++++++|
T Consensus 453 e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL 530 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL 530 (565)
T ss_pred hhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence 556688899999999988754 556666677888888889999877888999999999999999998 788899999999
Q ss_pred CEEEccCCcCCCCCCchh
Q 042603 595 RLIDLSHNNLSGHIPPCL 612 (874)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~l 612 (874)
++|++++|++. .|+..
T Consensus 531 ~hLeL~gNpfr--~Pr~~ 546 (565)
T KOG0472|consen 531 RHLELDGNPFR--QPRHQ 546 (565)
T ss_pred eEEEecCCccC--CCHHH
Confidence 99999999996 56543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=320.61 Aligned_cols=506 Identities=24% Similarity=0.299 Sum_probs=278.9
Q ss_pred EEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCC
Q 042603 87 LSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNN 166 (874)
Q Consensus 87 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 166 (874)
+|.+++++.. +|.-+-.-..++.|+++.|.+...+.+.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~~---ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLEL---IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCcc---cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence 4555555543 3344444444777777777665544444555555777777777766 56767777777777777777
Q ss_pred cCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccc
Q 042603 167 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESH 246 (874)
Q Consensus 167 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~ 246 (874)
.|. ..|....++.+|+++.|.+|.+.. .|. .+..+.+|++|+++.|.+.
T Consensus 79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~~-lP~-~~~~lknl~~LdlS~N~f~---------------------------- 127 (1081)
T KOG0618|consen 79 YIR-SVPSSCSNMRNLQYLNLKNNRLQS-LPA-SISELKNLQYLDLSFNHFG---------------------------- 127 (1081)
T ss_pred hHh-hCchhhhhhhcchhheeccchhhc-Cch-hHHhhhcccccccchhccC----------------------------
Confidence 776 456667777777777777776653 555 5667777777777776653
Q ss_pred cCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCC
Q 042603 247 YNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCL 326 (874)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l 326 (874)
.+|..+..+..++.+..++|.....++. .
T Consensus 128 ----------------------~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----------------------------~ 156 (1081)
T KOG0618|consen 128 ----------------------PIPLVIEVLTAEEELAASNNEKIQRLGQ-----------------------------T 156 (1081)
T ss_pred ----------------------CCchhHHhhhHHHHHhhhcchhhhhhcc-----------------------------c
Confidence 1233333333444444444411111111 1
Q ss_pred CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEE
Q 042603 327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEIL 406 (874)
Q Consensus 327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L 406 (874)
.++.+++..|.+.+.++.++.. +.. .|++.+|.+. -..+..+++|+.+....|++. .+.. .-++++.|
T Consensus 157 -~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L 224 (1081)
T KOG0618|consen 157 -SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTAL 224 (1081)
T ss_pred -cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEEe----cCcchhee
Confidence 1444445555444444444332 111 3555555554 112444555555555555554 2111 13455555
Q ss_pred EcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc
Q 042603 407 ALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486 (874)
Q Consensus 407 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 486 (874)
+.++|.++..... ..-.+|++++++.|+++ .+|+++..|.+|+.+...+|.++ .+|..+...++|+.|.+..|.+.
T Consensus 225 ~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 225 YADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred eeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh
Confidence 6666655522221 12245666666666665 33466666666666666666664 45555555666666666666665
Q ss_pred ccCCccccCCCCCCEEECcCCcCcccCCCCCC--CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhh
Q 042603 487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS--LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWI 564 (874)
Q Consensus 487 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 564 (874)
. +|....+.+.|++|||..|++....+..+. ...++.|+.+.|+++......-...+.|+.|.+.+|.+++..-..+
T Consensus 301 y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 301 Y-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred h-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 3 344455566666666666666422222222 2235555555555554432222334456666666666665554455
Q ss_pred cCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCC
Q 042603 565 DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNG 644 (874)
Q Consensus 565 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (874)
.+.+.|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++.+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~----------------------------- 429 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL----------------------------- 429 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh-----------------------------
Confidence 66666666666666666444445566666666666666665 455554442
Q ss_pred CCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEE
Q 042603 645 SPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLD 724 (874)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld 724 (874)
..|++|...+|.+. ..| .+..+++|+.+|+|.|+++...-..-..-++|++||
T Consensus 430 -------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 430 -------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred -------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 25556666666666 555 666677777777777777643322222226777777
Q ss_pred CCCCcCcccCChhhhcCCCCCeEEccCC
Q 042603 725 LSYNLLHGKIPPQLIVLNTLAVFRVAYN 752 (874)
Q Consensus 725 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 752 (874)
|++|.-.......|..+.++...++.-|
T Consensus 483 lSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 483 LSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccCCcccccchhhhHHhhhhhheecccC
Confidence 7777643333445555555555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=4.2e-35 Score=318.31 Aligned_cols=483 Identities=23% Similarity=0.270 Sum_probs=215.4
Q ss_pred EecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEE
Q 042603 10 LILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILS 88 (874)
Q Consensus 10 L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~ 88 (874)
+|.|++++ ..+|..+-.-..++.|+++.|.+... |.+...+.-+|+.|++++|.+. .|.. +..+.+|+.|+
T Consensus 3 vd~s~~~l--~~ip~~i~~~~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~~fp~~-----it~l~~L~~ln 74 (1081)
T KOG0618|consen 3 VDASDEQL--ELIPEQILNNEALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQISSFPIQ-----ITLLSHLRQLN 74 (1081)
T ss_pred cccccccC--cccchhhccHHHHHhhhccccccccC-chHHhhheeeeEEeeccccccccCCch-----hhhHHHHhhcc
Confidence 34444443 33444444444455555555544321 1222333333555555555544 3333 44555555555
Q ss_pred ccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcC
Q 042603 89 LSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDL 168 (874)
Q Consensus 89 Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 168 (874)
++.|.+.. .|.+..++.+|++++|.+|.+. ..|..+..+++|++||+|.|.+. .+|..+..+..++.+..++|..
T Consensus 75 ~s~n~i~~---vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~ 149 (1081)
T KOG0618|consen 75 LSRNYIRS---VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEK 149 (1081)
T ss_pred cchhhHhh---Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchh
Confidence 55555544 2345555555555555555543 44555555555555555555555 4455555555555555555511
Q ss_pred CCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccC
Q 042603 169 RGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYN 248 (874)
Q Consensus 169 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~ 248 (874)
... ++... .+.+++..|.+.+.++. .+..++. .|+|..|.+. .. .+.++.+|+.+.....
T Consensus 150 ~~~----lg~~~-ik~~~l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn-------- 209 (1081)
T KOG0618|consen 150 IQR----LGQTS-IKKLDLRLNVLGGSFLI-DIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERN-------- 209 (1081)
T ss_pred hhh----hcccc-chhhhhhhhhcccchhc-chhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhc--------
Confidence 111 11111 44555555554443333 2333333 3555555443 11 1222222222222110
Q ss_pred CCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCc
Q 042603 249 SLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQK 328 (874)
Q Consensus 249 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 328 (874)
.+..+.++ -++++.++.++|.+....+.. ...+|+++++++|++.+.. ..+..+.+
T Consensus 210 ------~ls~l~~~--------------g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~lp-~wi~~~~n 265 (1081)
T KOG0618|consen 210 ------QLSELEIS--------------GPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSNLP-EWIGACAN 265 (1081)
T ss_pred ------ccceEEec--------------CcchheeeeccCcceeecccc---ccccceeeecchhhhhcch-HHHHhccc
Confidence 11111111 123344444444443222221 1133444555555444433 44444555
Q ss_pred ccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCC-CCEEE
Q 042603 329 LATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS-LEILA 407 (874)
Q Consensus 329 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~-L~~L~ 407 (874)
|+.++..+|+++ .+|..++. ..+|+.|.+..|.+. .+|....+.++|++|+|..|++. .+|+.++..... |..|+
T Consensus 266 le~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 266 LEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred ceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHh
Confidence 555555555553 44544443 345555555555554 33434444555555555555554 444443332222 44444
Q ss_pred cccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccc
Q 042603 408 LSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG 487 (874)
Q Consensus 408 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 487 (874)
.+.|++.......-...+.|+.|++.+|.++......+.+.+.|+.|+|++|++.......+.++..|++|++++|+++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 4444444332222223344555555555555444444444555555555555554333334444555555555555554
Q ss_pred cCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCcc
Q 042603 488 PIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR 555 (874)
Q Consensus 488 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 555 (874)
.+|+.+..+..|++|...+|++. ..|....++.|+.+|++.|+++...-..-...++|++||+++|.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 23444555555555555555544 34444444555555555554443321111112455555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.2e-33 Score=288.71 Aligned_cols=369 Identities=25% Similarity=0.360 Sum_probs=291.9
Q ss_pred CCcccEEEccCCcCC-ccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCC
Q 042603 326 LQKLATLDVSNNFFL-GHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE 404 (874)
Q Consensus 326 l~~L~~L~Ls~n~l~-~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~ 404 (874)
++-.+-+|+++|.++ +.+|..+-+ +.+++.|.|....+. .+|+.++.+.+|+.|.+++|++. .+...+. .++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence 556778899999988 567777665 778999999988887 78899999999999999999887 4444433 488889
Q ss_pred EEEcccCcccc-cCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCC
Q 042603 405 ILALSNNTLQG-HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNN 483 (874)
Q Consensus 405 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 483 (874)
.+.+..|++.. -+|..+..+..|+.|||++|+++ +.|..+...+++-.|+||+|+|..+....|.+++.|-.|+|++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 99999988752 35666778889999999999987 77888888888899999999998555566778888889999999
Q ss_pred cccccCCccccCCCCCCEEECcCCcCcc-cCCCCCCCCcccEEEeeCcccC-ccchhhhhcCCCCcEEEccCccCCCCCc
Q 042603 484 NLEGPIPNEFCQLDCLKVLDLSNNSIFG-TLPSCLSLGSIEQVHLSKNKIE-GQLESIIHYYPYLVTLDLSYNRLHGSIP 561 (874)
Q Consensus 484 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 561 (874)
++. ..|.....+..|++|+|++|.+.. .+-...++++|+.|++++.+-+ .-+|..+..+.+|..+|+|.|.+. ..|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 987 566678888889999999988742 2223334677888888877544 235677788888888888888888 788
Q ss_pred hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCC
Q 042603 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP 641 (874)
Q Consensus 562 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (874)
+.+-++.+|+.|+|++|+|+ ..........+|++|++|.|+++ .+|.++..+
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL-------------------------- 290 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL-------------------------- 290 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh--------------------------
Confidence 88888888888888888887 44445566778888888888887 677776654
Q ss_pred CCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEecCCcccccchhhhccCCCCC
Q 042603 642 PNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 720 (874)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 720 (874)
+.|+.|++.+|+++- -||..+|.+.+|+++..++|++. ..|+.+..+..|
T Consensus 291 ----------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 291 ----------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred ----------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 377788888888763 37888888888888888888888 788888888888
Q ss_pred CEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603 721 ESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 721 ~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 759 (874)
+.|.|++|++- ..|+++.-|+-|+.||++.|+=-..+|
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 88888888887 678888888888888888886433444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.7e-32 Score=282.76 Aligned_cols=385 Identities=23% Similarity=0.284 Sum_probs=307.7
Q ss_pred CCCCCCEEEccCCccc-ccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcC
Q 042603 301 NNTDLKTLLLANNSLF-GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLK 379 (874)
Q Consensus 301 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 379 (874)
-+|-.+-.++++|.+. +.+|.....+++++.|.|...++. .+|.++.. +.+|++|.+++|++. .+-..+..++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 4566778899999998 557888888999999999998886 89988876 789999999999987 4445688889999
Q ss_pred EEEcccCcCCC-CchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccC
Q 042603 380 SLDISYNQLTG-AIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458 (874)
Q Consensus 380 ~L~l~~n~i~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 458 (874)
.+++..|++.. -+|..+|. +..|..|+|++|++. ..|..+..-+++-.|+|++|+|..+....|.+++.|-.||||+
T Consensus 82 sv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 99999998753 46777774 888999999999998 4567777778889999999999855556677888999999999
Q ss_pred CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcc-cCCCCC-CCCcccEEEeeCcccCccc
Q 042603 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFG-TLPSCL-SLGSIEQVHLSKNKIEGQL 536 (874)
Q Consensus 459 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~-~~~~L~~L~l~~n~i~~~~ 536 (874)
|++. .+|..+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+- .+|..+ .+.+|..++++.|++. ..
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 9998 677778889999999999998765444455667788888888876432 345444 4889999999999987 45
Q ss_pred hhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC-CCCCchhhcc
Q 042603 537 ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS-GHIPPCLVNT 615 (874)
Q Consensus 537 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~ 615 (874)
|..+-.+++|+.|+||+|+|+ .+.-..+...+|++|+++.|+++ ..|.++++++.|+.|.+.+|+++ ..||..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 677778899999999999998 44455666788999999999998 88999999999999999999987 3566666553
Q ss_pred ccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcccccccc
Q 042603 616 ALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 695 (874)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 695 (874)
..|+.+..++|.+. .+|+.+..+..
T Consensus 316 ------------------------------------------------------~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 316 ------------------------------------------------------IQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred ------------------------------------------------------hhhHHHHhhccccc-cCchhhhhhHH
Confidence 37778888899888 89999999999
Q ss_pred CCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 696 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 696 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
|+.|.|++|++. ..|+++.-|+.|+.|||..|+=--..|.--..-++|+.-++.
T Consensus 341 L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 341 LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred HHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 999999999998 789999999999999999997653333211122455555444
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-28 Score=243.40 Aligned_cols=248 Identities=24% Similarity=0.238 Sum_probs=124.4
Q ss_pred EEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEccc-CcCCCCchhHHHhcCCCCCEEEcc
Q 042603 331 TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISY-NQLTGAIPERMAMGCFSLEILALS 409 (874)
Q Consensus 331 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~L~~L~L~ 409 (874)
.++|..|+|+ .||...|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+|+ .+|...|.++.+++.|.+.
T Consensus 71 eirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 71 EIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred EEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence 3444444444 44444444444555555555555444455555544444443333 4444 4444444445555555555
Q ss_pred cCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCc-----------------------------
Q 042603 410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH----------------------------- 460 (874)
Q Consensus 410 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~----------------------------- 460 (874)
-|++.....+.|..++++..|.+.+|.+.......|..+.+++.+.+..|.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 555544444444455555555555554443322344444444444444443
Q ss_pred -------CCCCCchhhhc-cccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCc
Q 042603 461 -------LSGKIPRWLGS-LLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKN 530 (874)
Q Consensus 461 -------l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n 530 (874)
+...-+..|.. ...+..-..+.+...++.| ..|..+++|++|+|++|+++++-+.+|. ...+++|.|..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 21111111111 0111111112222222222 2466666666666666666665555554 566666666666
Q ss_pred ccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccC
Q 042603 531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYI 580 (874)
Q Consensus 531 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 580 (874)
++..+...+|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666666666666666666666666666666666666666666666655
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.6e-23 Score=251.47 Aligned_cols=339 Identities=22% Similarity=0.255 Sum_probs=234.0
Q ss_pred CCccCCCcccEEEccCCc------CCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh
Q 042603 321 MPIHCLQKLATLDVSNNF------FLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394 (874)
Q Consensus 321 ~~~~~l~~L~~L~Ls~n~------l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 394 (874)
.+|.++++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 356667777777775542 222345544433346778888777776 556555 4577788888877776 5555
Q ss_pred HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc
Q 042603 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474 (874)
Q Consensus 395 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 474 (874)
.+ ..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++
T Consensus 629 ~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 44 347777888887765444444 35667778888888776666777777778888888888776555666544 6777
Q ss_pred CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccC-------ccchhhhhcCCCCc
Q 042603 475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE-------GQLESIIHYYPYLV 547 (874)
Q Consensus 475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~ 547 (874)
|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|....+++|++|.+.++... ...+..+...++|+
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 888888887655455532 356778888888875 5666666777777777664321 12222334457888
Q ss_pred EEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCC
Q 042603 548 TLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAP 627 (874)
Q Consensus 548 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~ 627 (874)
.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------------- 844 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---------------- 844 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----------------
Confidence 88888888777788888888888888888876555677665 6888888888887543333211
Q ss_pred CccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCC-ccc
Q 042603 628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH-NNL 706 (874)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l 706 (874)
.++++.|+|++|.++ .+|..+..+++|+.|+|++ |++
T Consensus 845 -----------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 845 -----------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred -----------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 236778888888888 6788888888888998887 455
Q ss_pred ccchhhhccCCCCCCEEECCCCc
Q 042603 707 TGTIPTTFSNLKQIESLDLSYNL 729 (874)
Q Consensus 707 ~~~~p~~~~~l~~L~~LdLs~N~ 729 (874)
+ .+|..+..+++|+.+++++|.
T Consensus 883 ~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 883 Q-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred C-ccCcccccccCCCeeecCCCc
Confidence 5 567777888888888888874
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.8e-22 Score=245.28 Aligned_cols=342 Identities=22% Similarity=0.255 Sum_probs=270.2
Q ss_pred CChhhhcCCCCCcEEEccCCc------CCcccchhccCCC-CcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccc
Q 042603 343 IPVEIGTYLPGLMHLNLSRNA------FNGSIPSSFADMK-MLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQG 415 (874)
Q Consensus 343 i~~~~~~~l~~L~~L~l~~n~------i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~ 415 (874)
+....|..+++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 455667778999999997653 2334667777664 6999999999887 788766 36899999999999874
Q ss_pred cCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccC
Q 042603 416 HIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQ 495 (874)
Q Consensus 416 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 495 (874)
++..+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ +
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 566677899999999998876556664 7788999999999998777889999999999999999987655677665 7
Q ss_pred CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCC-------CCCchhhcCCC
Q 042603 496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH-------GSIPNWIDKLP 568 (874)
Q Consensus 496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~ 568 (874)
+++|+.|++++|...+.+|.. ..+|+.|++++|.++.++.. + .+++|+.|++.++... ...+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccccccc-c-cccccccccccccchhhccccccccchhhhhccc
Confidence 899999999999876666654 46899999999998765432 2 5788888888874422 12222333467
Q ss_pred CCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCC
Q 042603 569 QLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMG 648 (874)
Q Consensus 569 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (874)
+|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... +
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---------------------------------- 823 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N---------------------------------- 823 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence 89999999998888899999999999999999886554555432 1
Q ss_pred ccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCC
Q 042603 649 KEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 728 (874)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N 728 (874)
+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|
T Consensus 824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 458899999998765566653 368999999999999 67889999999999999995
Q ss_pred cCcccCChhhhcCCCCCeEEccCCC
Q 042603 729 LLHGKIPPQLIVLNTLAVFRVAYNN 753 (874)
Q Consensus 729 ~l~~~~p~~l~~l~~L~~l~ls~N~ 753 (874)
+--..+|.....+++|+.++++++.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 4444578888999999999999884
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.8e-25 Score=218.86 Aligned_cols=385 Identities=22% Similarity=0.278 Sum_probs=259.2
Q ss_pred EEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEccc-
Q 042603 332 LDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN- 410 (874)
Q Consensus 332 L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~- 410 (874)
.|-++-.++ ++|..+ .+.-..++|..|.|+.+.|.+|+.+++|+.|||++|.|+ .|....|.+++++..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344444555 788775 358899999999999999999999999999999999999 66666777899988877666
Q ss_pred CcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc----
Q 042603 411 NTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE---- 486 (874)
Q Consensus 411 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 486 (874)
|+|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+....-..|..+.+++.+.+..|.+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 9999998999999999999999999999888899999999999999999998554458888999999988887731
Q ss_pred --------ccCCccccCCCCCCEEECcCCcC-------------------------cccCCC-CC-CCCcccEEEeeCcc
Q 042603 487 --------GPIPNEFCQLDCLKVLDLSNNSI-------------------------FGTLPS-CL-SLGSIEQVHLSKNK 531 (874)
Q Consensus 487 --------~~~~~~~~~l~~L~~L~L~~n~l-------------------------~~~~~~-~~-~~~~L~~L~l~~n~ 531 (874)
...|..+++.....-..+.+.++ .+.-|. ++ .+++|+.|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 12222233222221111111111 111121 12 27788888888888
Q ss_pred cCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCC---
Q 042603 532 IEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI--- 608 (874)
Q Consensus 532 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 608 (874)
|+++.+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|.+|..+.+|..|.|-.|.+...-
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 88888888888888888888888888666677888888888888888888888888888888888888888775321
Q ss_pred --------------Cch-----hhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccc
Q 042603 609 --------------PPC-----LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRIL 669 (874)
Q Consensus 609 --------------p~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (874)
|+| +....++...+....+.... .....+...+| +.+
T Consensus 366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~e----e~~~~~s~~cP--------------------~~c 421 (498)
T KOG4237|consen 366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPE----ELGCLTSSPCP--------------------PPC 421 (498)
T ss_pred HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCcc----ccCCCCCCCCC--------------------CCc
Confidence 111 11111111111100000000 00000000000 011
Q ss_pred cCcc-eEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603 670 TSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR 748 (874)
Q Consensus 670 ~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ 748 (874)
+-+. ....|++.+. .+|..+. .....|++.+|.++ .+|.. .+.+| .+|+|+|+++...-..|.+++.|.+|-
T Consensus 422 ~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli 494 (498)
T KOG4237|consen 422 TCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI 494 (498)
T ss_pred chhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence 1121 1234444444 5555544 45566777777777 44544 45566 677777777766666777777777777
Q ss_pred ccCC
Q 042603 749 VAYN 752 (874)
Q Consensus 749 ls~N 752 (874)
++||
T Consensus 495 lsyn 498 (498)
T KOG4237|consen 495 LSYN 498 (498)
T ss_pred EecC
Confidence 7776
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.3e-21 Score=218.67 Aligned_cols=267 Identities=22% Similarity=0.302 Sum_probs=152.6
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 432 (874)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. +++|++|++++|+++.. |. ..++|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~LtsL-P~---lp~sL----- 264 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSL-PV---LPPGL----- 264 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCcc-cC---ccccc-----
Confidence 4556677777766 4555543 35666777766666 44431 34555555555555532 21 12344
Q ss_pred cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512 (874)
Q Consensus 433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 512 (874)
+.|++++|.++ .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++
T Consensus 265 -------------------~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 265 -------------------LELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred -------------------ceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence 44444444443 22221 1234455555555542 232 12456666666666653
Q ss_pred CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC
Q 042603 513 LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK 592 (874)
Q Consensus 513 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 592 (874)
+|.. ...|+.|++++|++++++. ...+|+.|++++|++++ +|.. .++|+.|++++|++.+ +|.. ..
T Consensus 317 Lp~l--p~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~ 382 (788)
T PRK15387 317 LPAL--PSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS 382 (788)
T ss_pred CCCC--cccccccccccCccccccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence 2322 2346666666666665432 11467777777777773 4432 2456667777777763 4432 24
Q ss_pred CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCc
Q 042603 593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM 672 (874)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 672 (874)
+|+.|++++|++++ +|.. .++|
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---------------------------------------------------------~s~L 404 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---------------------------------------------------------PSEL 404 (788)
T ss_pred ccceEEecCCcccC-CCCc---------------------------------------------------------ccCC
Confidence 67777777777762 3321 1256
Q ss_pred ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603 673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 741 (874)
Q Consensus 673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 741 (874)
+.|++++|+++ .+|..+ .+|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus 405 ~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 405 KELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 67788888877 356432 45677788888887 567777778888888888888887777766444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.2e-20 Score=214.07 Aligned_cols=268 Identities=25% Similarity=0.314 Sum_probs=181.4
Q ss_pred CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEE
Q 042603 327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEIL 406 (874)
Q Consensus 327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L 406 (874)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 34668999999998 8998764 489999999999984 554 2588999999999999 67752 4689999
Q ss_pred EcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc
Q 042603 407 ALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486 (874)
Q Consensus 407 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 486 (874)
++++|.++... .. .++|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++
T Consensus 268 ~Ls~N~L~~Lp-~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTHLP-AL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhhhh-hc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 99999988533 22 3568888888888873 4432 3567888888887774 3331 124555666666665
Q ss_pred ccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC
Q 042603 487 GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK 566 (874)
Q Consensus 487 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 566 (874)
+ +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|..
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l--------------------------p~~L~~L~Ls~N~L~~-LP~l--- 380 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLAS-LPTL--------------------------PSELYKLWAYNNRLTS-LPAL--- 380 (788)
T ss_pred c-cccc---ccccceEecCCCccCC-CCCC--------------------------Ccccceehhhcccccc-Cccc---
Confidence 3 3321 1245555555555542 2221 1344555555555552 3332
Q ss_pred CCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCC
Q 042603 567 LPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSP 646 (874)
Q Consensus 567 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (874)
..+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|..
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----------------------------------- 420 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----------------------------------- 420 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc-----------------------------------
Confidence 2356666777776663 3432 256778888888876 34431
Q ss_pred CCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCC
Q 042603 647 MGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL 717 (874)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 717 (874)
+.+|+.|++++|+|+ .+|..++.+++|+.|+|++|.+++..|..+..+
T Consensus 421 ----------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 ----------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ----------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 125667889999988 788889999999999999999999888877443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6e-19 Score=202.04 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=33.7
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccc---hhhhccCCCCCCEEECCCCcCc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT---IPTTFSNLKQIESLDLSYNLLH 731 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~LdLs~N~l~ 731 (874)
.|+.|++++|+++ .+|..+. ..|+.|++++|++++. +|..++.++.+..|++.+|+++
T Consensus 368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5556666666666 3454443 3566666777766632 2223334466677777777775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.3e-18 Score=197.27 Aligned_cols=246 Identities=23% Similarity=0.359 Sum_probs=118.4
Q ss_pred CCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEc
Q 042603 280 LNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNL 359 (874)
Q Consensus 280 L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l 359 (874)
.+.++++++.++ .+|..++ +.|+.|++++|++...... + ..+|++|++++|.++ .+|..+. ++|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELKSLPEN-L--QGNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChh-h--ccCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 455666665555 4554432 3466666666665543221 1 235666666666655 4554432 35666666
Q ss_pred cCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcc
Q 042603 360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIG 439 (874)
Q Consensus 360 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 439 (874)
++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+++. |..+. ++|+.|++++|+++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc
Confidence 666665 3444432 35666666666665 4554332 3556666666655532 22211 345555555555552
Q ss_pred cCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCC
Q 042603 440 EIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519 (874)
Q Consensus 440 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 519 (874)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|+++. +|..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~- 387 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP- 387 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH-
Confidence 23222 1345555555555553 343332 35555555555554 233333 1345555555555542 222211
Q ss_pred CcccEEEeeCcccCccc---hhhhhcCCCCcEEEccCccCC
Q 042603 520 GSIEQVHLSKNKIEGQL---ESIIHYYPYLVTLDLSYNRLH 557 (874)
Q Consensus 520 ~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~Ls~n~l~ 557 (874)
..|+.|++++|+++.++ +..+..++.+..+++.+|.++
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 23555555555554332 112223344555555555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1e-18 Score=187.31 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=39.7
Q ss_pred ccccccCCeEecCCcccccchhhhccC-----CCCCCEEECCCCcCc----ccCChhhhcCCCCCeEEccCCCCccc---
Q 042603 690 IGYLTRIRALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLH----GKIPPQLIVLNTLAVFRVAYNNLSGK--- 757 (874)
Q Consensus 690 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~----~~~p~~l~~l~~L~~l~ls~N~l~~~--- 757 (874)
+..+++|++|++++|.+++.....+.. .+.|++|++++|.++ ..+...+..+++|+.+++++|+++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 334445555555555555422222211 245555555555554 12223344445555555555555532
Q ss_pred -CCCccccC-CCCCcccccCCCC
Q 042603 758 -IPDRVAQF-STFEEDSYEGNPF 778 (874)
Q Consensus 758 -~p~~~~~~-~~l~~~~~~gNp~ 778 (874)
....+..+ ..+.++++.+|||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 22222223 3445555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.1e-18 Score=187.08 Aligned_cols=276 Identities=24% Similarity=0.282 Sum_probs=200.6
Q ss_pred eEEccCCcCc-ccCCccccccCCCCeEEccCCcCCCC----CchhhhccccCCeeecCCCcccc------cCCccccCCC
Q 042603 429 RLQLDGNKFI-GEIPESLSKCYLLGGLYLSDNHLSGK----IPRWLGSLLALQDIIMPNNNLEG------PIPNEFCQLD 497 (874)
Q Consensus 429 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~ 497 (874)
.|+|..+.++ ......+..+..|+.++++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677788776 34445567778899999999998642 44556677889999999988762 2334567788
Q ss_pred CCCEEECcCCcCcccCCCCCC-C---CcccEEEeeCcccCcc----chhhhhcC-CCCcEEEccCccCCCC----Cchhh
Q 042603 498 CLKVLDLSNNSIFGTLPSCLS-L---GSIEQVHLSKNKIEGQ----LESIIHYY-PYLVTLDLSYNRLHGS----IPNWI 564 (874)
Q Consensus 498 ~L~~L~L~~n~l~~~~~~~~~-~---~~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~ 564 (874)
+|+.|++++|.+.+..+..+. + ++|++|++++|++++. ....+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 999999999998754443332 3 3499999999998842 23345666 8999999999999843 34456
Q ss_pred cCCCCCcEEEccCccCccc----CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccC
Q 042603 565 DKLPQLSYILLANNYIEGE----IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYF 640 (874)
Q Consensus 565 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (874)
..++.|++|++++|.+.+. ++..+..+++|+.|++++|.+++..+..+....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~------------------------ 217 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL------------------------ 217 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh------------------------
Confidence 6788999999999999853 334456677999999999998743332222210
Q ss_pred CCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccc-----cccCCeEecCCccccc----chh
Q 042603 641 PPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGY-----LTRIRALNLSHNNLTG----TIP 711 (874)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p 711 (874)
..+++|+.|++++|.+++.....+.. .+.|+.|++++|.++. .++
T Consensus 218 --------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 271 (319)
T cd00116 218 --------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271 (319)
T ss_pred --------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence 11358999999999998644333322 3799999999999972 345
Q ss_pred hhccCCCCCCEEECCCCcCccc----CChhhhcC-CCCCeEEccCCCC
Q 042603 712 TTFSNLKQIESLDLSYNLLHGK----IPPQLIVL-NTLAVFRVAYNNL 754 (874)
Q Consensus 712 ~~~~~l~~L~~LdLs~N~l~~~----~p~~l~~l-~~L~~l~ls~N~l 754 (874)
..+..+++|+.+|+++|.++.. ....+... +.|+.+++.+|++
T Consensus 272 ~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 272 EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 6677779999999999999855 44455555 6889999988864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=4.5e-18 Score=149.31 Aligned_cols=170 Identities=27% Similarity=0.484 Sum_probs=129.9
Q ss_pred cCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCC
Q 042603 512 TLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQL 591 (874)
Q Consensus 512 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 591 (874)
.+|..+.++.++.|.+++|+++.++|. +..+.+|+.|++++|++. .+|..+..++.|+.|+++-|++. ..|..|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 456667777888888888888866654 556788899999999988 67888889999999999999987 888899999
Q ss_pred CCCCEEEccCCcCCC-CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603 592 KEVRLIDLSHNNLSG-HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT 670 (874)
Q Consensus 592 ~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (874)
+.|+.|||..|++.. .+|..+.. ++
T Consensus 102 p~levldltynnl~e~~lpgnff~------------------------------------------------------m~ 127 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFY------------------------------------------------------MT 127 (264)
T ss_pred chhhhhhccccccccccCCcchhH------------------------------------------------------HH
Confidence 999999999998863 22322221 34
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 741 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 741 (874)
.|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+- ..|..++.+++|++|.+.+|+++ .+|+.++++
T Consensus 128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 6667778888777 67777888888888888888777 66777777888888888888777 555555554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-17 Score=146.54 Aligned_cols=179 Identities=27% Similarity=0.458 Sum_probs=151.8
Q ss_pred cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccc
Q 042603 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY 621 (874)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 621 (874)
.+...+.|.+|+|+++ .+|..+..+.+|+.|++.+|++. ..|..++.++.|+.|+++-|++. ..|..++.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs------- 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS------- 100 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-------
Confidence 4567788999999999 67777999999999999999998 78999999999999999999986 55665544
Q ss_pred ccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEe
Q 042603 622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALN 700 (874)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ 700 (874)
++.|+.|||.+|++.. ..|..|..++.|+.|+
T Consensus 101 -----------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 101 -----------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred -----------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 3478889999999874 5789999999999999
Q ss_pred cCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCC---CcccccCCC
Q 042603 701 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTF---EEDSYEGNP 777 (874)
Q Consensus 701 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l---~~~~~~gNp 777 (874)
|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|.+.-.+|+ ++++.-. .......||
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENP 210 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCC
Confidence 9999999 88889999999999999999997 6889999999999999999999987776 4555432 233456677
Q ss_pred CCC
Q 042603 778 FLC 780 (874)
Q Consensus 778 ~~C 780 (874)
|.-
T Consensus 211 wv~ 213 (264)
T KOG0617|consen 211 WVN 213 (264)
T ss_pred CCC
Confidence 754
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=2e-15 Score=173.17 Aligned_cols=119 Identities=33% Similarity=0.602 Sum_probs=109.1
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCccccC-CCCCcccccCCCCCCCCCCCCCCC
Q 042603 751 YNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGLPLSKSCD 789 (874)
Q Consensus 751 ~N~l~~~~p~~~~~~-~~l~~~~~~gNp~~C~~~l~~~c~ 789 (874)
+|+++|.+|..+... ..+..+++.+|+++|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 355678899999999987656674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=2e-11 Score=140.34 Aligned_cols=113 Identities=30% Similarity=0.470 Sum_probs=101.0
Q ss_pred CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCc
Q 042603 593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM 672 (874)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 672 (874)
.++.|+|++|.++|.+|..+..+ ++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L------------------------------------------------------~~L 444 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL------------------------------------------------------RHL 444 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC------------------------------------------------------CCC
Confidence 47789999999999999877653 489
Q ss_pred ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC-CCCCeEEccC
Q 042603 673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLAVFRVAY 751 (874)
Q Consensus 673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~l~ls~ 751 (874)
+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999998875 4678899999
Q ss_pred CCCcccCC
Q 042603 752 NNLSGKIP 759 (874)
Q Consensus 752 N~l~~~~p 759 (874)
|...+..|
T Consensus 525 N~~lc~~p 532 (623)
T PLN03150 525 NAGLCGIP 532 (623)
T ss_pred CccccCCC
Confidence 97543344
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.9e-12 Score=135.52 Aligned_cols=194 Identities=25% Similarity=0.384 Sum_probs=132.5
Q ss_pred CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603 496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575 (874)
Q Consensus 496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 575 (874)
+.--...|++.|++.........+..|+.+.+..|.+.. +|..+..+..|+++||+.|+++ ..|..++.++ |+.|.+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 344456788888876333333336677777777777763 3556677777888888888887 5676677666 778888
Q ss_pred cCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF 655 (874)
Q Consensus 576 ~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (874)
++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l---------------------------------------- 188 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL---------------------------------------- 188 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH----------------------------------------
Confidence 888877 67777777777788888888775 555555443
Q ss_pred EecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603 656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735 (874)
Q Consensus 656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 735 (874)
.+|+.|.+..|.+. ..|+++..|+ |..||+|+|+++ .+|-.|.+|+.|++|-|.+|++. ..|
T Consensus 189 --------------~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPP 250 (722)
T KOG0532|consen 189 --------------TSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPP 250 (722)
T ss_pred --------------HHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CCh
Confidence 36677777777777 5666666543 777888888887 77788888888888888888886 344
Q ss_pred hhh---hcCCCCCeEEccCC
Q 042603 736 PQL---IVLNTLAVFRVAYN 752 (874)
Q Consensus 736 ~~l---~~l~~L~~l~ls~N 752 (874)
..+ +...-.++|+..-.
T Consensus 251 AqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 251 AQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHHhccceeeeeeecchhc
Confidence 433 23344556666555
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.16 E-value=1.1e-12 Score=137.23 Aligned_cols=209 Identities=26% Similarity=0.420 Sum_probs=164.1
Q ss_pred EEECcCCcCcccCCC-C--CCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603 501 VLDLSNNSIFGTLPS-C--LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577 (874)
Q Consensus 501 ~L~L~~n~l~~~~~~-~--~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 577 (874)
+|.|++-++. .+|. . ..+..-...+++.|++..+ |..+..+..|+.+.+..|.+. .+|..++++..|..++++.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccccC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3455555554 3332 1 2356667889999999855 455667778999999999998 7889999999999999999
Q ss_pred ccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEe
Q 042603 578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTT 657 (874)
Q Consensus 578 n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (874)
|+++ ..|..++.|+ |+.|-+++|+++ .+|..++.
T Consensus 131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~------------------------------------------- 164 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL------------------------------------------- 164 (722)
T ss_pred chhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc-------------------------------------------
Confidence 9998 7888888874 889999999997 66766552
Q ss_pred cCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChh
Q 042603 658 KNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 737 (874)
Q Consensus 658 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 737 (874)
...|..||.+.|.+. .+|..++++.+|+.|++..|++. -.|+.+..|+ |..||+|.|+++ .+|-.
T Consensus 165 -----------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 165 -----------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred -----------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchh
Confidence 247888999999998 78999999999999999999999 4566666664 889999999999 78999
Q ss_pred hhcCCCCCeEEccCCCCcccCCCc--cccCCCCCcccc
Q 042603 738 LIVLNTLAVFRVAYNNLSGKIPDR--VAQFSTFEEDSY 773 (874)
Q Consensus 738 l~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~l~~~~~ 773 (874)
|..+..|++|-|.+|.|..++-+. .+...-|++++.
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence 999999999999999998543221 123334555554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=3.7e-11 Score=132.51 Aligned_cols=85 Identities=32% Similarity=0.487 Sum_probs=43.8
Q ss_pred cceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccC
Q 042603 672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAY 751 (874)
Q Consensus 672 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~ 751 (874)
|+++++++|.+. .++..+..+..+..|.+++|++.. .+..++.++++++|++++|.++...+ +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 444555555322 344445555555555555555552 24455555555555555555553322 55555555555555
Q ss_pred CCCcccCCC
Q 042603 752 NNLSGKIPD 760 (874)
Q Consensus 752 N~l~~~~p~ 760 (874)
|.++..+|.
T Consensus 287 n~~~~~~~~ 295 (394)
T COG4886 287 NSLSNALPL 295 (394)
T ss_pred ccccccchh
Confidence 555554443
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.4e-12 Score=128.19 Aligned_cols=191 Identities=22% Similarity=0.215 Sum_probs=83.0
Q ss_pred ccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCcccccccc
Q 042603 26 IASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLC 105 (874)
Q Consensus 26 l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~ 105 (874)
=+++.+|+.+.|.++.....-.......|++++.||+++|-+.. ......+...+|+|+.|+++.|.+..... ...-.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-w~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-WFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-HHHHHHHHHhcccchhcccccccccCCcc-ccchh
Confidence 34445555555555543211101123345555555555554321 11122234455555555555555432110 01112
Q ss_pred CCCCCcEEEcCCCCCCCcc-hhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCc-cccccCCCCCC
Q 042603 106 ELVHLQELYIRDNDLRDSL-LWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL-PLCLANLTSLR 183 (874)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 183 (874)
.+++|+.|.++.|.++... ......+++|+.|+|.+|............+..|++|||++|.+.... -...+.++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 3455555555555555321 222344555555555555322222223334455555555555543211 12344555555
Q ss_pred EEEcccccccccCCccc-----cCCCCCCCEEEccccccc
Q 042603 184 VLDVSYNQLTENISSSP-----LMHLTSIEELILSNNHFQ 218 (874)
Q Consensus 184 ~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~l~~n~~~ 218 (874)
.|+++.+.+......+. ...+++|++|++..|++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 55555555443111101 133555555655555543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.9e-11 Score=117.73 Aligned_cols=61 Identities=33% Similarity=0.446 Sum_probs=38.3
Q ss_pred cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (874)
....|+.+|||+|.|+ .+.+...-+|.++.|+++.|.+... +.+..+++|+.||||+|.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 3455677777777776 4455556667777777777776522 22556666666666666654
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1e-10 Score=129.01 Aligned_cols=182 Identities=35% Similarity=0.535 Sum_probs=124.5
Q ss_pred CCCCCEEECcCCcCcccCCCCCCCC-cccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603 496 LDCLKVLDLSNNSIFGTLPSCLSLG-SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574 (874)
Q Consensus 496 l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 574 (874)
.+.++.|++.+|.++...+...... +|+.|++++|++..+. .....+++|+.|++++|+++ .+|...+..+.|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 3556666666666653333222232 6777777777666442 34667788888888888887 4554444778888888
Q ss_pred ccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEE
Q 042603 575 LANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ 654 (874)
Q Consensus 575 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (874)
+++|++. .+|........|+.+++++|+.. .++..+.+
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~---------------------------------------- 230 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN---------------------------------------- 230 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh----------------------------------------
Confidence 8888887 55555555666888888888532 22222222
Q ss_pred EEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccC
Q 042603 655 FTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 734 (874)
Q Consensus 655 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 734 (874)
+..+..+.+++|++. ..+..++.++.++.|++++|+++...+ ++.+.+++.||+++|.++...
T Consensus 231 --------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 231 --------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred --------------cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 235566678888887 447778888899999999999995544 888999999999999998777
Q ss_pred Chhh
Q 042603 735 PPQL 738 (874)
Q Consensus 735 p~~l 738 (874)
|...
T Consensus 294 ~~~~ 297 (394)
T COG4886 294 PLIA 297 (394)
T ss_pred hhhh
Confidence 6553
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-11 Score=121.60 Aligned_cols=195 Identities=22% Similarity=0.273 Sum_probs=97.7
Q ss_pred hhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-----ccc--hhHHHHHhcCCCCCEEEccccC
Q 042603 24 QSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-----VDT--SFLQIVSESMASLRILSLSYSR 93 (874)
Q Consensus 24 ~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-----~~~--~~~~~~~~~l~~L~~L~Ls~n~ 93 (874)
+.+..+..+++++||||.+..... ...+.+.++|+..++++-... ++. .++..++..+++|++|+||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 444455555555555555432211 223344455555555543222 111 1233334555566666666666
Q ss_pred CCCCcc--ccccccCCCCCcEEEcCCCCCCCcch-------------hcccCCCCCCEEEccCCcCCCC----CcccccC
Q 042603 94 LNKNTI--LDQGLCELVHLQELYIRDNDLRDSLL-------------WCLANMTSLQVLNVASNQLTGN----FPPGFCE 154 (874)
Q Consensus 94 ~~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~-------------~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~ 154 (874)
+....+ +..-+.++..|++|.|.+|.+.-..- ...+.-+.|+++..++|++... +...|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 543221 12234456666666666665532111 1123345666666666665422 1224455
Q ss_pred CCCCCEEEccCCcCCC----CccccccCCCCCCEEEcccccccccC---CccccCCCCCCCEEEccccccc
Q 042603 155 LVLLRELYIDNNDLRG----SLPLCLANLTSLRVLDVSYNQLTENI---SSSPLMHLTSIEELILSNNHFQ 218 (874)
Q Consensus 155 l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~~~ 218 (874)
.+.|+.+.++.|.|.. ....+|..+++|++|||..|.++..- ....+..+++|++|+++.|.+.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 5666666666666542 12345566677777777776665311 1114455666777777766654
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=3.8e-11 Score=118.90 Aligned_cols=215 Identities=19% Similarity=0.244 Sum_probs=145.0
Q ss_pred CCCCCCEEecCCCCCC--CCch-------hhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccccc
Q 042603 3 NFTNLEELILVESDLH--VSQL-------LQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVEVD 70 (874)
Q Consensus 3 ~l~~L~~L~Ls~~~~~--~~~~-------~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~ 70 (874)
+.++|+..++|+.--+ ...+ .+.+..+|+|++||||.|.+....+ ..-+.+++.|++|.+.+|.+.-.
T Consensus 56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE 135 (382)
T ss_pred hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence 4567777777776432 2222 3455667788888888887764332 12345678888888888876611
Q ss_pred -chh---------HHHHHhcCCCCCEEEccccCCCCCc--cccccccCCCCCcEEEcCCCCCCCc----chhcccCCCCC
Q 042603 71 -TSF---------LQIVSESMASLRILSLSYSRLNKNT--ILDQGLCELVHLQELYIRDNDLRDS----LLWCLANMTSL 134 (874)
Q Consensus 71 -~~~---------~~~~~~~l~~L~~L~Ls~n~~~~~~--~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L 134 (874)
... .....+.-+.||++....|++.... .+...|...+.|+.+.+..|.|... ...++..+++|
T Consensus 136 ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~L 215 (382)
T KOG1909|consen 136 AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHL 215 (382)
T ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcc
Confidence 111 1122456678888888888876532 2345677778888888888887542 33567888899
Q ss_pred CEEEccCCcCCCC----CcccccCCCCCCEEEccCCcCCCCccccc-----cCCCCCCEEEccccccccc---CCccccC
Q 042603 135 QVLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLRGSLPLCL-----ANLTSLRVLDVSYNQLTEN---ISSSPLM 202 (874)
Q Consensus 135 ~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~---~~~~~l~ 202 (874)
++|||..|.++.. +...+..+++|+.|++++|.+......+| ...++|++|.+.+|.++.. +....+.
T Consensus 216 evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ 295 (382)
T KOG1909|consen 216 EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA 295 (382)
T ss_pred eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh
Confidence 9999988887743 33456777889999999988875544333 2468899999999987631 1111345
Q ss_pred CCCCCCEEEcccccc
Q 042603 203 HLTSIEELILSNNHF 217 (874)
Q Consensus 203 ~l~~L~~L~l~~n~~ 217 (874)
..+.|+.|+|++|.+
T Consensus 296 ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 296 EKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhhHHhcCCcccc
Confidence 588899999999988
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.2e-10 Score=105.94 Aligned_cols=127 Identities=25% Similarity=0.320 Sum_probs=43.4
Q ss_pred hcCCCCCEEEccccCCCCCcccccccc-CCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccc-cCCC
Q 042603 79 ESMASLRILSLSYSRLNKNTILDQGLC-ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGF-CELV 156 (874)
Q Consensus 79 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~ 156 (874)
.++.++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+... .+..+++|++|++++|.|+.. ++.+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I----e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI----ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccc----cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 3455667777777777653 2343 4667777777777776432 366677777777777777743 3333 3567
Q ss_pred CCCEEEccCCcCCCCc-cccccCCCCCCEEEcccccccccCC--ccccCCCCCCCEEEc
Q 042603 157 LLRELYIDNNDLRGSL-PLCLANLTSLRVLDVSYNQLTENIS--SSPLMHLTSIEELIL 212 (874)
Q Consensus 157 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~l 212 (874)
+|++|++++|+|.... -..++.+++|++|++.+|.++..-. ...+..+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777777775421 2456677888888888887764211 113566888888874
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.1e-10 Score=112.67 Aligned_cols=134 Identities=31% Similarity=0.365 Sum_probs=91.4
Q ss_pred cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCccc
Q 042603 444 SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIE 523 (874)
Q Consensus 444 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~ 523 (874)
.....+.|+++|+++|.++ .+.+++.-.|.++.|++++|.+... +.+..+++|+.|||++|.++...-.-..+.+++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 3445567888888888887 5666777788888888888888743 337778888889999888874333333477888
Q ss_pred EEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCC-chhhcCCCCCcEEEccCccCcc
Q 042603 524 QVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI-PNWIDKLPQLSYILLANNYIEG 582 (874)
Q Consensus 524 ~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~ 582 (874)
.|.+++|.|... ..+..+-+|..||+++|+|.... -..++++|-|+.+.|.+|.+.+
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888888877544 23455566777777777776322 2345666666666666666653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=6.6e-10 Score=103.88 Aligned_cols=125 Identities=26% Similarity=0.344 Sum_probs=46.6
Q ss_pred cccCCeeecCCCcccccCCcccc-CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEE
Q 042603 472 LLALQDIIMPNNNLEGPIPNEFC-QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD 550 (874)
Q Consensus 472 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 550 (874)
..++++|+|++|.|+.+ +.+. .+.+|+.|++++|.|+ .++....++.|+.|++++|+|+.+.+.....+|+|++|+
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 33456666666666532 2333 4567777777777776 445555577788888888888776554445678888888
Q ss_pred ccCccCCCCC-chhhcCCCCCcEEEccCccCcccC---CccccCCCCCCEEEc
Q 042603 551 LSYNRLHGSI-PNWIDKLPQLSYILLANNYIEGEI---PVQLCQLKEVRLIDL 599 (874)
Q Consensus 551 Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L 599 (874)
+++|+|.... -..+..+++|+.|++.+|++.... ...+..+++|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888887532 245677888888888888886431 123556788888764
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.8e-11 Score=119.20 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=7.4
Q ss_pred CCCCcEEEccCccCC
Q 042603 543 YPYLVTLDLSYNRLH 557 (874)
Q Consensus 543 l~~L~~L~Ls~n~l~ 557 (874)
+++|+.|.+..|.++
T Consensus 325 l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 325 LENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhhccccccc
Confidence 344555555555544
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.2e-09 Score=83.80 Aligned_cols=60 Identities=45% Similarity=0.608 Sum_probs=40.7
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcC
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 730 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 730 (874)
+|+.|++++|+++...+..|.++++|++|++++|+++.+.|+.|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777777655556666677777777777777766666677777777777776654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.7e-09 Score=82.93 Aligned_cols=61 Identities=39% Similarity=0.539 Sum_probs=57.6
Q ss_pred ccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCC
Q 042603 694 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL 754 (874)
Q Consensus 694 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l 754 (874)
++|++|++++|+++...++.|.++++|++||+++|+++...|..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988889999999999999999999999899999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=2.7e-10 Score=125.57 Aligned_cols=243 Identities=26% Similarity=0.261 Sum_probs=127.4
Q ss_pred CCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeC
Q 042603 450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK 529 (874)
Q Consensus 450 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 529 (874)
.++.+.+..|.+.. +...+..+.++..+++.+|.+.... ..+..+++|++|++++|+|+ .+...-.++.|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-cccchhhccchhhheecc
Confidence 33344444444432 1222444445555555555554321 11444555666666666654 333333344456666666
Q ss_pred cccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCC
Q 042603 530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI 608 (874)
Q Consensus 530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 608 (874)
|.|+.+. .+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-
T Consensus 150 N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 150 NLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred Ccchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc
Confidence 6555442 23335566666666666664333 1 34556666666666666422 22333334444455555554110
Q ss_pred CchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc--CcceEEcCCCcccccC
Q 042603 609 PPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT--SMSGIDLSCNKLTGEI 686 (874)
Q Consensus 609 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~N~l~~~~ 686 (874)
+. + ... .|+.+++++|++. .+
T Consensus 225 ~l------------------------------~--------------------------~~~~~~L~~l~l~~n~i~-~~ 247 (414)
T KOG0531|consen 225 GL------------------------------N--------------------------ELVMLHLRELYLSGNRIS-RS 247 (414)
T ss_pred Cc------------------------------c--------------------------cchhHHHHHHhcccCccc-cc
Confidence 00 0 011 2667778888777 44
Q ss_pred CccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc---CChh-hhcCCCCCeEEccCCCCcccCC
Q 042603 687 PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK---IPPQ-LIVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 687 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---~p~~-l~~l~~L~~l~ls~N~l~~~~p 759 (874)
+..+..+..+..|+++.|++...- .+.....+..+..+.|++... .... ......+....+.+|......+
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 456667777888888888777442 344556667777777776522 1111 4555667777777777766554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=4.8e-10 Score=123.56 Aligned_cols=242 Identities=26% Similarity=0.254 Sum_probs=162.1
Q ss_pred hccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEE
Q 042603 470 GSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL 549 (874)
Q Consensus 470 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 549 (874)
..+..++.+.+..|.+.. +-..+..+.+|+.|++.+|+|.......-.+.+|++|++++|.|+.+.+ +..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence 445667777788888774 3345777888999999999987444335557888888888888887643 5556678888
Q ss_pred EccCccCCCCCchhhcCCCCCcEEEccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCC
Q 042603 550 DLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT 628 (874)
Q Consensus 550 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~ 628 (874)
++++|.|+.. ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+...-...
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~----------------- 205 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD----------------- 205 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH-----------------
Confidence 8888888743 345558888888888888875544 2 467778888888888775211100
Q ss_pred ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcccccccc--CCeEecCCccc
Q 042603 629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTR--IRALNLSHNNL 706 (874)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l 706 (874)
....+..+++..|.++..-+ +..+.. |+.+++++|.+
T Consensus 206 ---------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 206 ---------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI 244 (414)
T ss_pred ---------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc
Confidence 01234445788888873332 222333 88999999999
Q ss_pred ccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCccc---CCC-ccccCCCCCcccccCCCC
Q 042603 707 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGK---IPD-RVAQFSTFEEDSYEGNPF 778 (874)
Q Consensus 707 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~---~p~-~~~~~~~l~~~~~~gNp~ 778 (874)
. ..+..+..+..+..||+++|+++.. ..+.....+..+....|.+... ... ......++....+.+||.
T Consensus 245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 8 4446778889999999999999755 3345566677777777776522 111 022334455555555553
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=5.3e-09 Score=122.79 Aligned_cols=108 Identities=27% Similarity=0.352 Sum_probs=65.1
Q ss_pred CCCCcEEEcCCCC--CCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCE
Q 042603 107 LVHLQELYIRDND--LRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV 184 (874)
Q Consensus 107 l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 184 (874)
++.|++|-+.+|. +.......|..++.|++|||++|.--+.+|..++++.+||+|+++++.+. .+|..++++.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3456666666664 34344444666666666666666555566666666666676666666666 56666666666677
Q ss_pred EEcccccccccCCccccCCCCCCCEEEccccc
Q 042603 185 LDVSYNQLTENISSSPLMHLTSIEELILSNNH 216 (874)
Q Consensus 185 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 216 (874)
|++..+.-...++. ....+++|++|.+....
T Consensus 623 Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccc-hhhhcccccEEEeeccc
Confidence 76666554333322 44456666666665543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=1.3e-08 Score=119.50 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=89.6
Q ss_pred CCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccC--CCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCC
Q 042603 54 FKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSR--LNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANM 131 (874)
Q Consensus 54 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 131 (874)
....+...+-++.+..... -..+++|+.|-+..|. +... ..+.|..++.|++||+++|.=-+.+|.+++++
T Consensus 522 ~~~~rr~s~~~~~~~~~~~-----~~~~~~L~tLll~~n~~~l~~i--s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAG-----SSENPKLRTLLLQRNSDWLLEI--SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred hhheeEEEEeccchhhccC-----CCCCCccceEEEeecchhhhhc--CHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 3445555555554441111 2345567777777765 3221 22447778888888888776666788888888
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEccccc
Q 042603 132 TSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191 (874)
Q Consensus 132 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 191 (874)
-+|++|+++++.+. .+|..+.++.+|.+|++..+.-...+|.....+++|++|.+....
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888888888888 778888888888888888877655566667778888888887654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=3.9e-10 Score=121.51 Aligned_cols=179 Identities=33% Similarity=0.415 Sum_probs=128.0
Q ss_pred hhhccCCCCCCEEEccCCcccccccCccccCC-CCCcEEECCCccccccchhHHHHHh----------cCCCCCEEEccc
Q 042603 23 LQSIASFSSLKYLSMRGCVLKGALHGQDFHEF-KNLEHLVMDRMLVEVDTSFLQIVSE----------SMASLRILSLSY 91 (874)
Q Consensus 23 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~----------~l~~L~~L~Ls~ 91 (874)
|-.+..|++||+|.+.+|.+.... .+..+ .+|+.|+..+.. . .++.++. .-..|...+.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~---GL~~lr~qLe~LIC~~Sl-~----Al~~v~ascggd~~ns~~Wn~L~~a~fsy 173 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK---GLQELRHQLEKLICHNSL-D----ALRHVFASCGGDISNSPVWNKLATASFSY 173 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh---hhHHHHHhhhhhhhhccH-H----HHHHHHHHhccccccchhhhhHhhhhcch
Confidence 556778888999999988876321 22222 346666654421 1 1111111 123577778888
Q ss_pred cCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcc-cccCCCCCCEEEccCCcCCC
Q 042603 92 SRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPP-GFCELVLLRELYIDNNDLRG 170 (874)
Q Consensus 92 n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~ 170 (874)
|.+.. +..++.-++.|+.|+|++|+++... .+..|++|++|||++|.+.. +|. ...++. |+.|++++|.++.
T Consensus 174 N~L~~---mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 174 NRLVL---MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred hhHHh---HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHHh
Confidence 88865 4578888999999999999998664 68899999999999999984 443 233444 9999999999874
Q ss_pred CccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccc
Q 042603 171 SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQ 218 (874)
Q Consensus 171 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~ 218 (874)
. ..+.++.+|+.||+++|-+.+.-....+..+..|+.|.|.+|++.
T Consensus 247 L--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 L--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4 468899999999999998886333334566788999999999875
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-09 Score=104.93 Aligned_cols=158 Identities=22% Similarity=0.232 Sum_probs=85.5
Q ss_pred CCCEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCC
Q 042603 6 NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLR 85 (874)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 85 (874)
.|+++|||+..+...++...++.|.+|+.|.|.|+.+.+.+. ..+++-.+|+.|+++.+.- +.+...+.++.+|+.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSG-FTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccc-cchhHHHHHHHhhhhHh
Confidence 467777777777666666677777777777777777776664 3566667777777776643 23334555567777777
Q ss_pred EEEccccCCCCCccccccccC-CCCCcEEEcCCCCCC--C-cchhcccCCCCCCEEEccCCc-CCCCCcccccCCCCCCE
Q 042603 86 ILSLSYSRLNKNTILDQGLCE-LVHLQELYIRDNDLR--D-SLLWCLANMTSLQVLNVASNQ-LTGNFPPGFCELVLLRE 160 (874)
Q Consensus 86 ~L~Ls~n~~~~~~~~~~~l~~-l~~L~~L~L~~n~i~--~-~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 160 (874)
.|+++-|.+..... ...+.+ -++|+.|+++++.-. . .+.--..++++|..||||.|. ++......|.+++.|++
T Consensus 264 ~LNlsWc~l~~~~V-tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKV-TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhh-hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 77777666544221 111111 245566666554311 0 011112345555555555442 22112223334444444
Q ss_pred EEccCC
Q 042603 161 LYIDNN 166 (874)
Q Consensus 161 L~Ls~n 166 (874)
|.++.|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 444444
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1e-08 Score=110.86 Aligned_cols=108 Identities=27% Similarity=0.326 Sum_probs=83.4
Q ss_pred ccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603 669 LTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR 748 (874)
Q Consensus 669 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ 748 (874)
++.++.|||++|+++... .+..++.|+.|||++|.++.+.--...... |+.|.+++|.++.. ..+.+|.+|..||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence 568899999999998544 788899999999999999944333333344 99999999998754 5678999999999
Q ss_pred ccCCCCcccCCC-ccccCCCCCcccccCCCCCCC
Q 042603 749 VAYNNLSGKIPD-RVAQFSTFEEDSYEGNPFLCG 781 (874)
Q Consensus 749 ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~~C~ 781 (874)
+++|-|++.-.- .+..+..+..+.+.|||.-|.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999988764221 123456677889999999884
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.7e-08 Score=97.92 Aligned_cols=179 Identities=20% Similarity=0.156 Sum_probs=108.5
Q ss_pred CCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCC-CCCc-chhcccCCCC
Q 042603 56 NLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDND-LRDS-LLWCLANMTS 133 (874)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~ 133 (874)
.|++||++...++ ...+..++..|.+|+.|.+.++++.+.+ ...+++-.+|+.|+++.+. ++.. ..--+.+|+.
T Consensus 186 Rlq~lDLS~s~it--~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVIT--VSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhhee--HHHHHHHHHHHHhhhhccccccccCcHH--HHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 4777888776655 2334555777888888888888777642 3566777788888887764 2221 1223567778
Q ss_pred CCEEEccCCcCCCCCcccc-cC-CCCCCEEEccCCcCC---CCccccccCCCCCCEEEccccc-ccccCCccccCCCCCC
Q 042603 134 LQVLNVASNQLTGNFPPGF-CE-LVLLRELYIDNNDLR---GSLPLCLANLTSLRVLDVSYNQ-LTENISSSPLMHLTSI 207 (874)
Q Consensus 134 L~~L~Ls~n~i~~~~~~~~-~~-l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L 207 (874)
|..|++++|.+....-..+ .+ -++|+.|++++++-. ..+.....++++|.+|||+.|. ++..... .+.+++.|
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L 340 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYL 340 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchh
Confidence 8888888887654322211 11 246777777776411 1222334567788888887764 3322222 56677788
Q ss_pred CEEEccccccccccCcccccCCCCCceecccc
Q 042603 208 EELILSNNHFQIPISLEPLFNLSKLKTFNGEI 239 (874)
Q Consensus 208 ~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~ 239 (874)
++|.++.|....+...-.+...+.|.+++...
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 88888877644333344455666677766633
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.7e-07 Score=91.08 Aligned_cols=109 Identities=22% Similarity=0.255 Sum_probs=62.4
Q ss_pred CCcEEEcCCCCCCCcch-hcc-cCCCCCCEEEccCCcCCC--CCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCE
Q 042603 109 HLQELYIRDNDLRDSLL-WCL-ANMTSLQVLNVASNQLTG--NFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRV 184 (874)
Q Consensus 109 ~L~~L~L~~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 184 (874)
.++.|.+.++.|..+-. ..| ..+++++.+||.+|.|+. .+..-+.++|.|++|++++|.+...+...-..+.+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34444455554433211 222 235667777777777662 12223346777777777777766332211135567888
Q ss_pred EEcccccccccCCccccCCCCCCCEEEcccccc
Q 042603 185 LDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217 (874)
Q Consensus 185 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~ 217 (874)
|-|.+..+.-.-....+..+|.+++|+++.|.+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 888777665333333566788888888888743
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=4e-07 Score=88.53 Aligned_cols=227 Identities=20% Similarity=0.201 Sum_probs=126.7
Q ss_pred CCEEecCCCCCCCC-chhhhccCCCCCCEEEccCCccccccc-CccccCCCCCcEEECCCccccccchhHHHHHhcCCCC
Q 042603 7 LEELILVESDLHVS-QLLQSIASFSSLKYLSMRGCVLKGALH-GQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASL 84 (874)
Q Consensus 7 L~~L~Ls~~~~~~~-~~~~~l~~l~~L~~L~Ls~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 84 (874)
++.|.+-++.+... .....-...++++.+||.+|.+++-.. ...+.++++|++|+++.|.+..+...++ ....+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 34555666666422 222223355777777777777763321 2234577777788877777663322111 245677
Q ss_pred CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcc--hhcccC-CCCCCEEEccCCcCCCC--CcccccCCCCCC
Q 042603 85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSL--LWCLAN-MTSLQVLNVASNQLTGN--FPPGFCELVLLR 159 (874)
Q Consensus 85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~ 159 (874)
++|-|.+..+.-.. ....+..+|.++.|+++.|.+.... ...... -+.+++|.+..|...-- .-.--.-.+++.
T Consensus 124 ~~lVLNgT~L~w~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEEcCCCCChhh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 77777777664322 2345667777777777777544321 111111 12344444444422100 000001235666
Q ss_pred EEEccCCcCCCCc-cccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCc-----ccccCCCCCc
Q 042603 160 ELYIDNNDLRGSL-PLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISL-----EPLFNLSKLK 233 (874)
Q Consensus 160 ~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----~~l~~l~~L~ 233 (874)
.+-+..|.+.... -..+..++.+..|+|+.|++..-...+.+..++.|..|.++++++..+..- -.++.+++++
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~ 282 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ 282 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence 6777777665332 245666777778888888886644455678888888888888877533211 1245666666
Q ss_pred eecc
Q 042603 234 TFNG 237 (874)
Q Consensus 234 ~l~~ 237 (874)
.++.
T Consensus 283 vLNG 286 (418)
T KOG2982|consen 283 VLNG 286 (418)
T ss_pred EecC
Confidence 6655
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=2.2e-07 Score=79.74 Aligned_cols=59 Identities=24% Similarity=0.468 Sum_probs=28.3
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 731 (874)
.++.++|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.++-.||.-+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 3344445555554 34444555555555555555554 33444444444555554444443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=1.6e-06 Score=83.31 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=38.7
Q ss_pred CCCCEEecCCCCCC---CCchhhhccCCCCCCEEEccCCccc---cccc------CccccCCCCCcEEECCCcccc-ccc
Q 042603 5 TNLEELILVESDLH---VSQLLQSIASFSSLKYLSMRGCVLK---GALH------GQDFHEFKNLEHLVMDRMLVE-VDT 71 (874)
Q Consensus 5 ~~L~~L~Ls~~~~~---~~~~~~~l~~l~~L~~L~Ls~~~~~---~~~~------~~~l~~l~~L~~L~l~~~~~~-~~~ 71 (874)
..+..++||+|.++ ..++...+.+-++|+..++|.--.. +.++ ..++..|++|+..++|+|.+. ...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 34455555555553 1233444444455555555443111 1111 123344555555555555444 111
Q ss_pred hhHHHHHhcCCCCCEEEccccCC
Q 042603 72 SFLQIVSESMASLRILSLSYSRL 94 (874)
Q Consensus 72 ~~~~~~~~~l~~L~~L~Ls~n~~ 94 (874)
..+..++++-+.|.+|.|++|.+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC
Confidence 22333444455555555555544
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.2e-06 Score=57.86 Aligned_cols=38 Identities=37% Similarity=0.637 Sum_probs=24.2
Q ss_pred ccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603 694 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 732 (874)
Q Consensus 694 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 732 (874)
++|++|++++|+|+ .+|..++++++|+.|++++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35677777777777 345556777777777777777763
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=3.2e-06 Score=97.18 Aligned_cols=137 Identities=22% Similarity=0.271 Sum_probs=85.9
Q ss_pred CCCCEEEccCCcccccccCccc-cCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCC
Q 042603 30 SSLKYLSMRGCVLKGALHGQDF-HEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELV 108 (874)
Q Consensus 30 ~~L~~L~Ls~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~ 108 (874)
.+|++||++|...-..--+..+ .-+|+|++|.+++-.+..+. +.....++++|+.||+|+++++.. .++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl----~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL----SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc----HHHhccc
Confidence 4677777776543211111122 24677777777765544222 444567788888888888887763 5677888
Q ss_pred CCcEEEcCCCCCCC-cchhcccCCCCCCEEEccCCcCCCCC--c----ccccCCCCCCEEEccCCcCCCCc
Q 042603 109 HLQELYIRDNDLRD-SLLWCLANMTSLQVLNVASNQLTGNF--P----PGFCELVLLRELYIDNNDLRGSL 172 (874)
Q Consensus 109 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~--~----~~~~~l~~L~~L~Ls~n~l~~~~ 172 (874)
+|+.|.+.+=.+.. ..-..+-++++|++||+|........ . +.-..+|+|+.||.|++.+....
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 88888887766554 22234567888888888876544221 1 12234789999999988876543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=4.8e-07 Score=77.64 Aligned_cols=88 Identities=27% Similarity=0.417 Sum_probs=61.7
Q ss_pred CCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCC
Q 042603 325 CLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLE 404 (874)
Q Consensus 325 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~ 404 (874)
....|+.+++++|.+. .+|..+...+|.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..++. +.++.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~ 126 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLD 126 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHH
Confidence 3456667777777776 667666666677777788777777 66667777777777888777776 66666664 66666
Q ss_pred EEEcccCccccc
Q 042603 405 ILALSNNTLQGH 416 (874)
Q Consensus 405 ~L~L~~n~l~~~ 416 (874)
.|+..+|.+..+
T Consensus 127 ~Lds~~na~~ei 138 (177)
T KOG4579|consen 127 MLDSPENARAEI 138 (177)
T ss_pred HhcCCCCccccC
Confidence 777766665543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.4e-05 Score=55.67 Aligned_cols=39 Identities=31% Similarity=0.620 Sum_probs=33.2
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccc
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 709 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 709 (874)
++|++|++++|+|+ .+|..++.|++|+.|++++|+|+..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 37899999999999 5777899999999999999999954
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=8.2e-06 Score=93.83 Aligned_cols=136 Identities=23% Similarity=0.250 Sum_probs=72.1
Q ss_pred CCCCCEEEccccCCCCCcccccccc-CCCCCcEEEcCCCCCCCc-chhcccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 042603 81 MASLRILSLSYSRLNKNTILDQGLC-ELVHLQELYIRDNDLRDS-LLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLL 158 (874)
Q Consensus 81 l~~L~~L~Ls~n~~~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 158 (874)
-.+|++|++++....... ++..++ -+|+|++|.+++-.+... ......++++|..||+|+++++.. .+++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~-W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNG-WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhcc-HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 445666666665443221 222333 366666666666444322 223345566666666666666633 456666666
Q ss_pred CEEEccCCcCCC-CccccccCCCCCCEEEcccccccccC--C---ccccCCCCCCCEEEcccccccc
Q 042603 159 RELYIDNNDLRG-SLPLCLANLTSLRVLDVSYNQLTENI--S---SSPLMHLTSIEELILSNNHFQI 219 (874)
Q Consensus 159 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~l~~n~~~~ 219 (874)
+.|.+.+-.+.. ..-..+.++++|++||+|........ . ...-..+|+|+.||.+++.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 666666555542 11224556677777777665433210 0 0012347777777777766554
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.76 E-value=1.2e-05 Score=77.35 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=142.1
Q ss_pred CCCCCEEecCCCCCC--CCc-------hhhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-cc
Q 042603 4 FTNLEELILVESDLH--VSQ-------LLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-VD 70 (874)
Q Consensus 4 l~~L~~L~Ls~~~~~--~~~-------~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~ 70 (874)
-++|+..++|+-..+ .+. +.+++.+||+|+..+||.|.+....| .+-++.-+.|++|.+++|... +.
T Consensus 57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 456777777766432 111 35677888899999999888876655 233456788889998888765 11
Q ss_pred -----chhHHH----HHhcCCCCCEEEccccCCCCCcc--ccccccCCCCCcEEEcCCCCCCCc-----chhcccCCCCC
Q 042603 71 -----TSFLQI----VSESMASLRILSLSYSRLNKNTI--LDQGLCELVHLQELYIRDNDLRDS-----LLWCLANMTSL 134 (874)
Q Consensus 71 -----~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L 134 (874)
...+.. -.+.-|.|++.....|++..... +...+..-.+|+++.+..|.|.-. +...+..+++|
T Consensus 137 G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L 216 (388)
T COG5238 137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL 216 (388)
T ss_pred hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence 111111 13467889999999888854221 122334446888999999887643 12234567899
Q ss_pred CEEEccCCcCCCC----CcccccCCCCCCEEEccCCcCCCCccccc------cCCCCCCEEEcccccccccCCcc-----
Q 042603 135 QVLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLRGSLPLCL------ANLTSLRVLDVSYNQLTENISSS----- 199 (874)
Q Consensus 135 ~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~----- 199 (874)
++||+..|.++-. +...++..+.|+.|.+..|-++.....++ ...++|+.|-..+|...+.+...
T Consensus 217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~ 296 (388)
T COG5238 217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE 296 (388)
T ss_pred eeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhh
Confidence 9999999988743 23355667789999999998875443322 23578999999999776543321
Q ss_pred -ccCCCCCCCEEEcccccccc
Q 042603 200 -PLMHLTSIEELILSNNHFQI 219 (874)
Q Consensus 200 -~l~~l~~L~~L~l~~n~~~~ 219 (874)
.=..+|-|..|.+.+|++..
T Consensus 297 ~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 297 FEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhcccHHHHHHHHccCcchh
Confidence 11346778888888888763
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.75 E-value=1.8e-06 Score=88.30 Aligned_cols=111 Identities=21% Similarity=0.159 Sum_probs=63.2
Q ss_pred CCCCEEEccCCcccccccCc-cccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEcccc-CCCCCccccccccCC
Q 042603 30 SSLKYLSMRGCVLKGALHGQ-DFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYS-RLNKNTILDQGLCEL 107 (874)
Q Consensus 30 ~~L~~L~Ls~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~~~~~~~~~~~l~~l 107 (874)
..||.|.++||.=.+.-+.. .-.+++++++|.+.+|. .+....+..+.+.+++|++|++..| .++.. .+..-...+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhh
Confidence 36788888888533332222 22467888888887776 3444445556677888888888774 33332 122233457
Q ss_pred CCCcEEEcCCCC-CCCc-chhcccCCCCCCEEEccCC
Q 042603 108 VHLQELYIRDND-LRDS-LLWCLANMTSLQVLNVASN 142 (874)
Q Consensus 108 ~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n 142 (874)
++|++|++++|. |++- +..-..+++.++.+.+.+|
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 777777777764 2221 1112344555555555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=9.7e-05 Score=78.07 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=43.4
Q ss_pred CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCc-cCcccCCccccCCCCCCEE
Q 042603 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN-YIEGEIPVQLCQLKEVRLI 597 (874)
Q Consensus 519 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L 597 (874)
+..++.|++++|.++.++ .-.++|++|+++++.--..+|+.+ .++|+.|.+++| .+. .+|. +|+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 466778888877776653 112357778877644333556544 256777777777 333 3332 45666
Q ss_pred EccCCcC
Q 042603 598 DLSHNNL 604 (874)
Q Consensus 598 ~Ls~N~l 604 (874)
+++.+..
T Consensus 118 ~L~~n~~ 124 (426)
T PRK15386 118 EIKGSAT 124 (426)
T ss_pred EeCCCCC
Confidence 6665543
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=5e-06 Score=85.15 Aligned_cols=208 Identities=19% Similarity=0.132 Sum_probs=113.9
Q ss_pred CCCEEecCCCCC-CCCchhhhccCCCCCCEEEccCCcccccccCccc-cCCCCCcEEECCCccccccchhHHHHHhcCCC
Q 042603 6 NLEELILVESDL-HVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDF-HEFKNLEHLVMDRMLVEVDTSFLQIVSESMAS 83 (874)
Q Consensus 6 ~L~~L~Ls~~~~-~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 83 (874)
.|+.|.+.++.- ....+-.+..++|++++|++.+|....+..-..+ ..+++|++|++..|.. +....+......+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~-iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS-ITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch-hHHHHHHHHHHhhhh
Confidence 467788888854 2345556677889999999988853322221223 3688899998888643 223334445678899
Q ss_pred CCEEEccccC-CCCCccccccccCCCCCcEEEcCCCCCCCcchhcc----cCCCCCCEEEccCCc-CCCCCcccc-cCCC
Q 042603 84 LRILSLSYSR-LNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCL----ANMTSLQVLNVASNQ-LTGNFPPGF-CELV 156 (874)
Q Consensus 84 L~~L~Ls~n~-~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~ 156 (874)
|++++++-+. +++.. +..-+.+++.++.+.+++|.= ....++ +.+..+.++++..+. ++...-..+ ..+.
T Consensus 218 L~~lNlSwc~qi~~~g-v~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNG-VQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCc-chHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 9999988774 33322 223455666677776666531 111111 334455666655553 222111111 2356
Q ss_pred CCCEEEccCCcCCCC-cc-ccccCCCCCCEEEcccccccccCCcccc-CCCCCCCEEEcccccc
Q 042603 157 LLRELYIDNNDLRGS-LP-LCLANLTSLRVLDVSYNQLTENISSSPL-MHLTSIEELILSNNHF 217 (874)
Q Consensus 157 ~L~~L~Ls~n~l~~~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~l~~n~~ 217 (874)
.|+.|+.+++.-.+. .- ..-.+..+|++|-++.++--+..-...+ .+.+.|+.+++..+..
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 677777766543211 11 1223556777777776652221221122 3456666666666543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.61 E-value=0.00018 Score=65.09 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhcc
Q 042603 294 FPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA 373 (874)
Q Consensus 294 ~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 373 (874)
++...+..+++|+.+.+.. .+..+....|..+++|+.+.+..+ +. .++...+..+++++.+.+.+ .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence 3444455666666666653 455555556666666666666654 33 55555565555666666654 33334445566
Q ss_pred CCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEccc
Q 042603 374 DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN 410 (874)
Q Consensus 374 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~ 410 (874)
.+++|+.+++..+ +. .++...+.++ .++.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 6666666666544 33 4444444444 555555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.0002 Score=66.45 Aligned_cols=104 Identities=23% Similarity=0.313 Sum_probs=67.9
Q ss_pred CCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCC-chhhcCCCCCcEEEcc
Q 042603 498 CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSI-PNWIDKLPQLSYILLA 576 (874)
Q Consensus 498 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~ 576 (874)
+...+||++|.+. ..+.+..++.|..|.+.+|+|+.+.|..-..+++|..|.|.+|.|.... -..+..+|.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4556677777664 4444455667777777777777777766666777777777777765321 1235667788888888
Q ss_pred CccCcccC---CccccCCCCCCEEEccCC
Q 042603 577 NNYIEGEI---PVQLCQLKEVRLIDLSHN 602 (874)
Q Consensus 577 ~n~~~~~~---~~~~~~l~~L~~L~Ls~N 602 (874)
+|++...- .-.+..+++|+.||.+.=
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 88775321 123667888888887654
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.46 E-value=0.00028 Score=63.84 Aligned_cols=101 Identities=25% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeE
Q 042603 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL 430 (874)
Q Consensus 351 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 430 (874)
.++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+.++++++.+.+.+ .+.......|..+++++.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 33444444432 233333334444444444444442 32 33444444444444444432 2222223333344444444
Q ss_pred EccCCcCcccCCccccccCCCCeEEcc
Q 042603 431 QLDGNKFIGEIPESLSKCYLLGGLYLS 457 (874)
Q Consensus 431 ~L~~n~l~~~~~~~~~~~~~L~~L~l~ 457 (874)
++..+ +.......|.++ .++.+.+.
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 44332 222223334443 44444443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.44 E-value=0.00028 Score=65.49 Aligned_cols=82 Identities=26% Similarity=0.224 Sum_probs=34.9
Q ss_pred CCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCc-cccccCCCCCCEEEc
Q 042603 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSL-PLCLANLTSLRVLDV 187 (874)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 187 (874)
....+|+++|.+... ..|.+++.|..|.+++|.|+.+.|.--.-+++|..|.|.+|+|.... -.-+..|++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344455555554321 22444445555555555555333332222344555555555443210 112334444444444
Q ss_pred ccccc
Q 042603 188 SYNQL 192 (874)
Q Consensus 188 ~~n~l 192 (874)
-+|..
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 44443
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.26 E-value=0.0009 Score=70.93 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=28.7
Q ss_pred CCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCC
Q 042603 400 CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 459 (874)
Q Consensus 400 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 459 (874)
+.+++.|++++|.++.. |. -.++|++|.+++|.-...+|..+ ..+|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 56677777777766543 21 12346666666644333444333 235556666555
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.0011 Score=64.60 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=45.9
Q ss_pred CCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCC--cCCCCCcccccCCCCCCEEEccCCcCCCC-ccccccCCCCCCE
Q 042603 108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASN--QLTGNFPPGFCELVLLRELYIDNNDLRGS-LPLCLANLTSLRV 184 (874)
Q Consensus 108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 184 (874)
..|+.|.+.+..++.. ..+-.+++|++|++|.| .+.+.++-....+++|++|++++|++... .-..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3444444444443321 12334455555555555 44433333333445555555555555410 0012344455666
Q ss_pred EEcccccccccCC--ccccCCCCCCCEEEc
Q 042603 185 LDVSYNQLTENIS--SSPLMHLTSIEELIL 212 (874)
Q Consensus 185 L~L~~n~l~~~~~--~~~l~~l~~L~~L~l 212 (874)
||+.+|..++... ...|.-+++|++|+-
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccc
Confidence 6666655443110 113444566666653
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.49 E-value=0.00041 Score=79.14 Aligned_cols=63 Identities=29% Similarity=0.181 Sum_probs=32.5
Q ss_pred CCCCcEEEccCCc-CCcccchhccC-CCCcCEEEcccCc-CCCCchhHHHhcCCCCCEEEcccCcc
Q 042603 351 LPGLMHLNLSRNA-FNGSIPSSFAD-MKMLKSLDISYNQ-LTGAIPERMAMGCFSLEILALSNNTL 413 (874)
Q Consensus 351 l~~L~~L~l~~n~-i~~~~~~~~~~-l~~L~~L~l~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~l 413 (874)
+++|+.|+++++. ++...-..+.. +++|+.|.+.++. +++..-..+...++.|++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4566666666655 33222222222 5566666655555 44444444445566666666665543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.0029 Score=61.66 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=77.6
Q ss_pred CCCCCCEEecCCCCCCCCchhhhccCCCCCCEEEccCC--cccccccCccccCCCCCcEEECCCccccccchhHHHHHhc
Q 042603 3 NFTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGC--VLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSES 80 (874)
Q Consensus 3 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 80 (874)
.+..|+.|++.++.+ .....+-.+++|++|.+|.| +..+.++. ....+++|++|++++|.+.....+-+ +..
T Consensus 41 ~~~~le~ls~~n~gl---tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~p--l~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGL---TTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRP--LKE 114 (260)
T ss_pred cccchhhhhhhccce---eecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccch--hhh
Confidence 356778888888776 34566778899999999999 55555543 23466999999999999884433222 678
Q ss_pred CCCCCEEEccccCCCCCccc-cccccCCCCCcEEEcCCC
Q 042603 81 MASLRILSLSYSRLNKNTIL-DQGLCELVHLQELYIRDN 118 (874)
Q Consensus 81 l~~L~~L~Ls~n~~~~~~~~-~~~l~~l~~L~~L~L~~n 118 (874)
+++|..|++..|..+...-. ...|.-+++|++|+-...
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88999999999987652211 124566788888766544
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.29 E-value=0.0012 Score=75.30 Aligned_cols=136 Identities=20% Similarity=0.119 Sum_probs=85.7
Q ss_pred CCCCCCEEecCCCCCCCC-chhhhccCCCCCCEEEccCC-ccccccc---CccccCCCCCcEEECCCccccccchhHHHH
Q 042603 3 NFTNLEELILVESDLHVS-QLLQSIASFSSLKYLSMRGC-VLKGALH---GQDFHEFKNLEHLVMDRMLVEVDTSFLQIV 77 (874)
Q Consensus 3 ~l~~L~~L~Ls~~~~~~~-~~~~~l~~l~~L~~L~Ls~~-~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 77 (874)
.++.|+.|.++++..... .+......++.|+.|+++++ ......+ ......+++|+.|+++.+... ....+..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i-sd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV-TDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc-CchhHHHH
Confidence 357788888888854222 25567778899999999873 2211111 223456788999999888742 22334444
Q ss_pred HhcCCCCCEEEccccC-CCCCccccccccCCCCCcEEEcCCCCCCCc--chhcccCCCCCCEEEcc
Q 042603 78 SESMASLRILSLSYSR-LNKNTILDQGLCELVHLQELYIRDNDLRDS--LLWCLANMTSLQVLNVA 140 (874)
Q Consensus 78 ~~~l~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls 140 (874)
...+++|++|.+..+. ++... +......++.|++|++++|..... ......++++|+.|.+.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HhhCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 5568899999987777 45432 334556788899999998875421 22223446666665543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00029 Score=68.47 Aligned_cols=65 Identities=32% Similarity=0.394 Sum_probs=39.7
Q ss_pred HhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcch-hcccCCCCCCEEEccCCcCCC
Q 042603 78 SESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLL-WCLANMTSLQVLNVASNQLTG 146 (874)
Q Consensus 78 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~ 146 (874)
..+|+.|++|.||-|.|+.. ..+..|++|++|+|+.|.|.+... .-+.++++|+.|.|..|.-.+
T Consensus 37 c~kMp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HHhcccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 45677777777777776653 345666777777777776664322 334566666666666655443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00044 Score=67.29 Aligned_cols=84 Identities=23% Similarity=0.203 Sum_probs=51.1
Q ss_pred CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh-HHHhcCCCCCE
Q 042603 327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE-RMAMGCFSLEI 405 (874)
Q Consensus 327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~ 405 (874)
.+.+.|+..+|.+. . ..+...+|.|+.|.|+-|.|+..- .|..|++|++|.|..|.|. .+.+ ....++++|+.
T Consensus 19 ~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 45556666666655 2 234445677777777777776443 3667777777777777776 3333 23345666666
Q ss_pred EEcccCccccc
Q 042603 406 LALSNNTLQGH 416 (874)
Q Consensus 406 L~L~~n~l~~~ 416 (874)
|.|..|.-.+.
T Consensus 93 LWL~ENPCc~~ 103 (388)
T KOG2123|consen 93 LWLDENPCCGE 103 (388)
T ss_pred HhhccCCcccc
Confidence 66666655443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0042 Score=35.79 Aligned_cols=19 Identities=58% Similarity=0.901 Sum_probs=9.5
Q ss_pred CCeEecCCcccccchhhhcc
Q 042603 696 IRALNLSHNNLTGTIPTTFS 715 (874)
Q Consensus 696 L~~L~Ls~N~l~~~~p~~~~ 715 (874)
|++|||++|+|+ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0044 Score=35.74 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=14.8
Q ss_pred CCCEEECCCCcCcccCChhhhc
Q 042603 719 QIESLDLSYNLLHGKIPPQLIV 740 (874)
Q Consensus 719 ~L~~LdLs~N~l~~~~p~~l~~ 740 (874)
+|++|||++|+++ .+|++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677888888887 66666554
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.88 E-value=0.0004 Score=76.65 Aligned_cols=88 Identities=35% Similarity=0.444 Sum_probs=42.8
Q ss_pred CCCCCEEEccCCcCCCC----CcccccCCCC-CCEEEccCCcCCCC----ccccccCC-CCCCEEEcccccccccCCc--
Q 042603 131 MTSLQVLNVASNQLTGN----FPPGFCELVL-LRELYIDNNDLRGS----LPLCLANL-TSLRVLDVSYNQLTENISS-- 198 (874)
Q Consensus 131 l~~L~~L~Ls~n~i~~~----~~~~~~~l~~-L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~-- 198 (874)
..++++|.+++|.++.. ....+...+. +..|++..|.+... ....+..+ ..+++++++.|.++..-..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555555555554421 0112233333 44466666655422 22233344 5566777777766542111
Q ss_pred -cccCCCCCCCEEEccccccc
Q 042603 199 -SPLMHLTSIEELILSNNHFQ 218 (874)
Q Consensus 199 -~~l~~l~~L~~L~l~~n~~~ 218 (874)
..+..++.++++.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 13344556777777776654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.73 E-value=0.0037 Score=69.11 Aligned_cols=188 Identities=27% Similarity=0.255 Sum_probs=135.4
Q ss_pred CCEEecCCCCCC---CCchhhhccCCCCCCEEEccCCccccccc---CccccCC-CCCcEEECCCcccc-ccchhHHHHH
Q 042603 7 LEELILVESDLH---VSQLLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEF-KNLEHLVMDRMLVE-VDTSFLQIVS 78 (874)
Q Consensus 7 L~~L~Ls~~~~~---~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l-~~L~~L~l~~~~~~-~~~~~~~~~~ 78 (874)
+.+|.|.+|.+. ...+.+.+...+.|..|++++|.+.+.-. ...+... ..+++|.+..|.+. .....+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677888888875 23456788889999999999999874422 1222332 55778888888877 4455566667
Q ss_pred hcCCCCCEEEccccCCCCCc--ccccccc----CCCCCcEEEcCCCCCCCcch----hcccCCCC-CCEEEccCCcCCCC
Q 042603 79 ESMASLRILSLSYSRLNKNT--ILDQGLC----ELVHLQELYIRDNDLRDSLL----WCLANMTS-LQVLNVASNQLTGN 147 (874)
Q Consensus 79 ~~l~~L~~L~Ls~n~~~~~~--~~~~~l~----~l~~L~~L~L~~n~i~~~~~----~~~~~l~~-L~~L~Ls~n~i~~~ 147 (874)
.....+++++++.|.+.... .++..+. ...++++|++++|.++.... ..+...+. +..|++.+|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 77999999999999885322 2233333 57889999999999875322 34555566 77899999987743
Q ss_pred ----CcccccCC-CCCCEEEccCCcCCCC----ccccccCCCCCCEEEcccccccc
Q 042603 148 ----FPPGFCEL-VLLRELYIDNNDLRGS----LPLCLANLTSLRVLDVSYNQLTE 194 (874)
Q Consensus 148 ----~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 194 (874)
..+.+..+ ..+++++++.|.++.. +...+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 23345555 6789999999999854 34556678899999999998864
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.15 E-value=0.16 Score=30.57 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=7.1
Q ss_pred cCCeEecCCcccccc
Q 042603 695 RIRALNLSHNNLTGT 709 (874)
Q Consensus 695 ~L~~L~Ls~N~l~~~ 709 (874)
+|+.|+|++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444455555554433
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.15 E-value=0.16 Score=30.57 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=7.1
Q ss_pred cCCeEecCCcccccc
Q 042603 695 RIRALNLSHNNLTGT 709 (874)
Q Consensus 695 ~L~~L~Ls~N~l~~~ 709 (874)
+|+.|+|++|+|+.+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444455555554433
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.85 E-value=0.13 Score=27.35 Aligned_cols=11 Identities=55% Similarity=0.902 Sum_probs=3.3
Q ss_pred CCeEecCCccc
Q 042603 696 IRALNLSHNNL 706 (874)
Q Consensus 696 L~~L~Ls~N~l 706 (874)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.99 E-value=0.011 Score=56.24 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=54.6
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
..+.||++.|++. -.-..|.-++.|..||+|.|++. ..|..++++..+..+++.+|..+ ..|-++..++.+++++..
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4556777777765 34455666677777777777776 66677777777777777777666 456666777777776666
Q ss_pred CCCC
Q 042603 751 YNNL 754 (874)
Q Consensus 751 ~N~l 754 (874)
.|.+
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 6664
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.31 E-value=0.016 Score=55.17 Aligned_cols=88 Identities=24% Similarity=0.294 Sum_probs=54.7
Q ss_pred ccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCC
Q 042603 688 TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFST 767 (874)
Q Consensus 688 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~ 767 (874)
..+......+.||++.|++. -.-..|+-++.|..||+|.|.+. ..|..+..+..+..++...|+++.. |-++++.+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-CccccccCC
Confidence 34555566677777777766 33445566666777777777765 4566666666666666666666644 333566666
Q ss_pred CCcccccCCCC
Q 042603 768 FEEDSYEGNPF 778 (874)
Q Consensus 768 l~~~~~~gNp~ 778 (874)
.+..+.-+||+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 66666666653
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.27 E-value=0.33 Score=29.21 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=12.5
Q ss_pred CCCCCEEECCCCcCcccCC
Q 042603 717 LKQIESLDLSYNLLHGKIP 735 (874)
Q Consensus 717 l~~L~~LdLs~N~l~~~~p 735 (874)
+++|++|+|++|+|+...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777777774433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.27 E-value=0.33 Score=29.21 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=12.5
Q ss_pred CCCCCEEECCCCcCcccCC
Q 042603 717 LKQIESLDLSYNLLHGKIP 735 (874)
Q Consensus 717 l~~L~~LdLs~N~l~~~~p 735 (874)
+++|++|+|++|+|+...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4567777777777774433
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.09 E-value=0.23 Score=29.20 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=5.9
Q ss_pred cCCeEecCCcccccc
Q 042603 695 RIRALNLSHNNLTGT 709 (874)
Q Consensus 695 ~L~~L~Ls~N~l~~~ 709 (874)
+|+.|+|++|+|++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 444444444444433
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.30 E-value=0.2 Score=29.51 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=13.0
Q ss_pred CCCCEEECCCCcCcccCChhh
Q 042603 718 KQIESLDLSYNLLHGKIPPQL 738 (874)
Q Consensus 718 ~~L~~LdLs~N~l~~~~p~~l 738 (874)
++|++|||++|+|++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 578888888888876544433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=0.3 Score=46.09 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=56.1
Q ss_pred CCCEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCcccc-CCCCCcEEECCCccccccchhHHHHHhcCCCC
Q 042603 6 NLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFH-EFKNLEHLVMDRMLVEVDTSFLQIVSESMASL 84 (874)
Q Consensus 6 ~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 84 (874)
.++.+|-+++.+ ...-.+-+.+++.++.|.+.+|.--+.--..-++ -.++|+.|++++|.--..... ..+.++++|
T Consensus 102 ~IeaVDAsds~I-~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSI-MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchH-HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--HHHHHhhhh
Confidence 357788888887 5666788888899999999888533221111111 357899999998865332221 236778888
Q ss_pred CEEEccccC
Q 042603 85 RILSLSYSR 93 (874)
Q Consensus 85 ~~L~Ls~n~ 93 (874)
+.|.+.+-.
T Consensus 179 r~L~l~~l~ 187 (221)
T KOG3864|consen 179 RRLHLYDLP 187 (221)
T ss_pred HHHHhcCch
Confidence 888876543
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.59 E-value=0.66 Score=60.53 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=27.3
Q ss_pred EccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCC
Q 042603 748 RVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785 (874)
Q Consensus 748 ~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~ 785 (874)
||++|+|+...+..|..+.++..+++.||||.|+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 45666666666666666667777778889999988764
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.44 E-value=0.3 Score=46.04 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=37.6
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCc-hhHHHhcCCCCCEEEcccC-cccccCCccccCCCCCCeE
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAI-PERMAMGCFSLEILALSNN-TLQGHIFSEKFNLTNLKRL 430 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 430 (874)
.++.++-+++.|..+--+.+.++++++.|.+.++.--+.. -+.+....++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4556666666665554455556666666666665422111 1111122345555555544 2333222333344444444
Q ss_pred Ecc
Q 042603 431 QLD 433 (874)
Q Consensus 431 ~L~ 433 (874)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.77 E-value=2 Score=25.87 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=9.4
Q ss_pred CCCCEEECCCCcCc
Q 042603 718 KQIESLDLSYNLLH 731 (874)
Q Consensus 718 ~~L~~LdLs~N~l~ 731 (874)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46677777777765
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.41 E-value=4.1 Score=44.79 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=39.5
Q ss_pred CCCCCCEEecCCCCCC-CCchhhhccCCCCCCEEEccCC--cccccccCccccC--CCCCcEEECCCcccc----ccchh
Q 042603 3 NFTNLEELILVESDLH-VSQLLQSIASFSSLKYLSMRGC--VLKGALHGQDFHE--FKNLEHLVMDRMLVE----VDTSF 73 (874)
Q Consensus 3 ~l~~L~~L~Ls~~~~~-~~~~~~~l~~l~~L~~L~Ls~~--~~~~~~~~~~l~~--l~~L~~L~l~~~~~~----~~~~~ 73 (874)
+++.+..++|++|.+. .+.+...-...|+|+.|+|++| .+...- .+.+ ...|+.|-+.+|.+. .....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~---el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES---ELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh---hhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 3455666667776653 2222222334566777777766 222111 1222 233556666666654 12222
Q ss_pred HHHHHhcCCCCCEEE
Q 042603 74 LQIVSESMASLRILS 88 (874)
Q Consensus 74 ~~~~~~~l~~L~~L~ 88 (874)
...+-..+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 333334556555554
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.18 E-value=3.6 Score=24.69 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=6.4
Q ss_pred cCCeEecCCcccc
Q 042603 695 RIRALNLSHNNLT 707 (874)
Q Consensus 695 ~L~~L~Ls~N~l~ 707 (874)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555554
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.06 E-value=5.7 Score=24.36 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=9.8
Q ss_pred CCCCEEECCCCcCc
Q 042603 718 KQIESLDLSYNLLH 731 (874)
Q Consensus 718 ~~L~~LdLs~N~l~ 731 (874)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777774
No 91
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=57.40 E-value=5 Score=26.92 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=11.4
Q ss_pred eeeeeeehhhhhhhhhhhhhchhhHH
Q 042603 818 ITFTVSYGIVIIGIIGVLYINPYWRR 843 (874)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (874)
++++++.-+++++++..+++..|||+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEec
Confidence 44444444444444333334344444
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.75 E-value=90 Score=34.13 Aligned_cols=108 Identities=18% Similarity=0.050 Sum_probs=54.2
Q ss_pred CCCEEECcCCcCcccCCCCCC---CCcccEEEeeCccc-----Cccchhh----hhcCCCCcEEEccCccCCCCCchhh-
Q 042603 498 CLKVLDLSNNSIFGTLPSCLS---LGSIEQVHLSKNKI-----EGQLESI----IHYYPYLVTLDLSYNRLHGSIPNWI- 564 (874)
Q Consensus 498 ~L~~L~L~~n~l~~~~~~~~~---~~~L~~L~l~~n~i-----~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~- 564 (874)
.+++|++++|...+....... .++.+.+++..-.- ++..... -...--+..+.++.+++.......+
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 366777777776655444332 34455555543221 0000000 0111235667777777764333322
Q ss_pred --cCCCCCcEEEccCccCcc----cCCccccCCCCCCEEEccCCcCC
Q 042603 565 --DKLPQLSYILLANNYIEG----EIPVQLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 565 --~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~N~l~ 605 (874)
..-+.+..|++++|.... .+|.....-..++.+..+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 335667788888887643 23444444455555555555543
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=47.91 E-value=70 Score=34.91 Aligned_cols=256 Identities=14% Similarity=0.048 Sum_probs=123.6
Q ss_pred CCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhc---cCCCCcCEEEcccCcCCCCchhHHHhcC--
Q 042603 326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSF---ADMKMLKSLDISYNQLTGAIPERMAMGC-- 400 (874)
Q Consensus 326 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~~~~~~-- 400 (874)
-+.++++|++.|.+....|..+... ---+.++.|..+...-..+ ..-..+.+++++.|...+.+|..+....
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p---~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQP---GNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred cchhhhhccCCCcccccCCccccCC---CCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 3567888888888877766655431 1115666666543211111 1113467778888877777776553211
Q ss_pred CCCCEEEcccCccccc---CCccccCCCCCCeEEccCCcCcc----cCCccccccCCCCeEEccCCcCCCCCchhhhccc
Q 042603 401 FSLEILALSNNTLQGH---IFSEKFNLTNLKRLQLDGNKFIG----EIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473 (874)
Q Consensus 401 ~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 473 (874)
..++.++.+...+.-. .+...+.-++++..+++.|.... +.+.+ .-..+..-+
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~--------------------~k~~fS~~~ 300 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGA--------------------EKDTFSPDP 300 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccc--------------------cccccCcCc
Confidence 2344555554433211 11112233455555555554321 11111 111122222
Q ss_pred cCCeeecCCCcccccCCcc-cc-----CCCCCCEEECcCCcCcc--cCCCCCCCCcccEEEeeCcccCccchhh--hhcC
Q 042603 474 ALQDIIMPNNNLEGPIPNE-FC-----QLDCLKVLDLSNNSIFG--TLPSCLSLGSIEQVHLSKNKIEGQLESI--IHYY 543 (874)
Q Consensus 474 ~L~~L~l~~n~l~~~~~~~-~~-----~l~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~--~~~l 543 (874)
++ +|++..+.....-+.. +- .-+.=-++|++.|...+ ....+..-..+++|..+.|...+..... ...-
T Consensus 301 sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s 379 (553)
T KOG4242|consen 301 SG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQS 379 (553)
T ss_pred cc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeec
Confidence 33 3333333322111110 00 00111245555554432 2222333456899999999888765443 3345
Q ss_pred CCCcEEEccCccCCC-CCchhhc--------CCCCCcEEEccCccCcccCCc---cccCCCCCCEEEccCCcCC
Q 042603 544 PYLVTLDLSYNRLHG-SIPNWID--------KLPQLSYILLANNYIEGEIPV---QLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 544 ~~L~~L~Ls~n~l~~-~~~~~~~--------~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~Ls~N~l~ 605 (874)
+..+.+++..-.-.. ..+.... ...-+..+.++.|........ ....-+.+..||+++|...
T Consensus 380 ~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 380 KSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 667777776432210 1111111 123366778888877633222 2344578999999999875
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.24 E-value=22 Score=47.52 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=24.6
Q ss_pred EcCCCcccccCCccccccccCCeEecCCcccc
Q 042603 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 707 (874)
Q Consensus 676 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 707 (874)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888666677777888888888888765
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.19 E-value=31 Score=20.52 Aligned_cols=11 Identities=36% Similarity=0.924 Sum_probs=6.4
Q ss_pred CCCCEEEccCC
Q 042603 30 SSLKYLSMRGC 40 (874)
Q Consensus 30 ~~L~~L~Ls~~ 40 (874)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555666555
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.26 E-value=47 Score=36.99 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=37.9
Q ss_pred cCCCCCcEEEcCCCCCCCcch-hcc-cCCCCCCEEEccCCcCCCCCcccccC--CCCCCEEEccCCcCCC
Q 042603 105 CELVHLQELYIRDNDLRDSLL-WCL-ANMTSLQVLNVASNQLTGNFPPGFCE--LVLLRELYIDNNDLRG 170 (874)
Q Consensus 105 ~~l~~L~~L~L~~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~ 170 (874)
.+.+.+..++|++|++..... .++ ...++|+.|+|++|...-....++.+ ...|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 345666777777777654321 111 33567888888888222111223332 3457888888888764
No 97
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=23.30 E-value=32 Score=24.42 Aligned_cols=9 Identities=56% Similarity=1.287 Sum_probs=6.7
Q ss_pred CCCCCCCCC
Q 042603 776 NPFLCGLPL 784 (874)
Q Consensus 776 Np~~C~~~l 784 (874)
|||.|+|.+
T Consensus 1 NP~~CdC~l 9 (51)
T smart00082 1 NPFICDCEL 9 (51)
T ss_pred CCccCcCCc
Confidence 899996543
Done!