Query 042603
Match_columns 874
No_of_seqs 614 out of 5419
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-79 7.1E-84 732.8 47.8 672 6-797 51-757 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.5E-71 2.9E-75 658.4 48.2 658 55-780 50-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-60 5.8E-65 565.4 48.6 572 82-783 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-58 1E-62 546.2 52.3 604 33-759 7-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 4E-57 1.4E-61 546.0 39.9 539 85-785 7-566 (844)
6 3t6q_A CD180 antigen; protein- 100.0 5.6E-55 1.9E-59 511.0 42.0 536 86-783 16-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.4E-52 4.8E-57 490.7 47.1 537 59-759 16-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-53 8E-58 497.3 39.2 539 85-785 14-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-52 1.8E-56 485.8 41.3 531 57-760 13-563 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 6.1E-52 2.1E-56 500.8 36.6 557 58-790 7-590 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 4E-47 1.4E-51 441.6 39.3 272 451-783 259-535 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 3.7E-47 1.2E-51 441.9 37.1 509 111-760 10-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.7E-47 1.9E-51 437.8 34.0 488 112-783 9-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 6.9E-46 2.4E-50 428.7 37.2 496 81-759 4-514 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 2.9E-45 9.9E-50 432.8 32.2 447 254-783 323-870 (876)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-44 4.4E-49 426.8 37.7 519 109-784 53-585 (635)
17 4eco_A Uncharacterized protein 100.0 2.5E-45 8.6E-50 428.0 27.2 436 255-759 82-604 (636)
18 4eco_A Uncharacterized protein 100.0 3.1E-46 1E-50 435.7 17.7 442 278-780 81-601 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 8.2E-45 2.8E-49 416.4 27.8 455 257-784 3-486 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-44 2.3E-48 408.8 30.2 458 86-609 4-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 6.2E-42 2.1E-46 403.8 41.0 534 58-757 34-582 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 2.1E-43 7.3E-48 416.9 28.1 376 288-755 435-864 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-41 1.1E-45 389.7 29.9 456 255-784 32-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9E-41 3.1E-45 385.8 29.2 442 82-609 52-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.3E-40 1.1E-44 371.7 31.4 381 330-783 13-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 2.9E-39 1E-43 363.9 29.4 387 281-760 13-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 7.6E-39 2.6E-43 356.4 22.4 301 155-557 10-310 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 9.6E-38 3.3E-42 347.5 27.4 402 255-780 12-430 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-36 1.3E-40 334.8 26.0 361 102-614 36-396 (457)
30 2id5_A Lingo-1, leucine rich r 100.0 4.9E-36 1.7E-40 339.4 27.1 345 379-783 14-360 (477)
31 2id5_A Lingo-1, leucine rich r 100.0 2.9E-36 1E-40 341.2 25.0 326 403-785 13-339 (477)
32 1o6v_A Internalin A; bacterial 100.0 6E-35 2E-39 328.6 32.9 346 302-757 45-390 (466)
33 1o6v_A Internalin A; bacterial 100.0 5.5E-35 1.9E-39 328.9 32.5 347 276-733 44-390 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-35 7E-40 329.0 24.5 366 265-762 29-394 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 8.9E-34 3E-38 311.7 26.1 134 352-486 45-178 (390)
36 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-34 5.1E-39 306.5 19.0 256 475-788 52-312 (313)
37 3oja_B Anopheles plasmodium-re 100.0 2.2E-33 7.6E-38 325.5 26.1 334 351-782 50-383 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 3.7E-32 1.3E-36 298.8 28.5 242 326-605 44-285 (390)
39 4fmz_A Internalin; leucine ric 100.0 9.1E-32 3.1E-36 291.0 30.4 304 351-755 43-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 2.2E-32 7.6E-37 317.1 25.2 312 375-782 50-361 (597)
41 4fmz_A Internalin; leucine ric 100.0 1.5E-31 5.1E-36 289.3 30.0 307 323-731 40-346 (347)
42 1z7x_W Ribonuclease inhibitor; 100.0 7.4E-34 2.5E-38 320.5 3.2 362 327-756 3-412 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-32 1E-36 288.8 14.9 251 450-757 51-307 (313)
44 1xku_A Decorin; proteoglycan, 100.0 9.4E-30 3.2E-34 272.7 28.4 288 426-776 32-329 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-30 9.9E-35 276.8 23.8 126 353-485 34-159 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 3.4E-33 1.2E-37 315.0 0.0 308 279-606 4-355 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-30 1.6E-34 275.2 24.2 287 426-776 34-330 (332)
48 1xku_A Decorin; proteoglycan, 100.0 1E-29 3.6E-34 272.3 25.4 243 353-605 32-276 (330)
49 3zyj_A Leucine-rich repeat-con 100.0 8.7E-28 3E-32 268.1 24.5 249 477-784 47-297 (440)
50 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.8E-33 266.2 16.9 177 425-604 31-210 (353)
51 3zyi_A Leucine-rich repeat-con 100.0 1.6E-27 5.4E-32 267.0 24.7 231 498-784 76-308 (452)
52 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.6E-32 253.9 20.8 232 497-783 28-265 (306)
53 3ogk_B Coronatine-insensitive 100.0 8E-30 2.7E-34 297.2 3.4 430 22-506 65-547 (592)
54 3ogk_B Coronatine-insensitive 100.0 1.4E-29 4.8E-34 295.2 5.4 377 301-733 110-528 (592)
55 2z80_A TOLL-like receptor 2, v 100.0 7.4E-28 2.5E-32 260.5 17.3 206 375-606 30-236 (353)
56 2z66_A Variable lymphocyte rec 99.9 8.4E-28 2.9E-32 254.6 16.2 87 671-757 176-263 (306)
57 1ozn_A Reticulon 4 receptor; N 99.9 8.7E-27 3E-31 244.0 19.9 226 476-782 14-241 (285)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-26 5.9E-31 241.7 19.3 251 453-761 15-267 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 4.3E-26 1.5E-30 255.3 23.7 226 474-755 76-303 (452)
60 4fcg_A Uncharacterized protein 99.9 2E-26 6.7E-31 245.5 19.8 222 475-755 83-314 (328)
61 3zyj_A Leucine-rich repeat-con 99.9 3.9E-26 1.3E-30 254.7 22.7 247 427-755 45-292 (440)
62 4fcg_A Uncharacterized protein 99.9 1.9E-26 6.4E-31 245.6 18.9 225 496-778 80-313 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 6.6E-28 2.3E-32 256.2 6.2 266 428-760 13-281 (317)
64 3oja_A Leucine-rich immune mol 99.9 4.8E-27 1.6E-31 264.1 12.6 244 474-783 35-286 (487)
65 1wwl_A Monocyte differentiatio 99.9 1.9E-27 6.5E-32 252.0 8.6 249 445-756 39-310 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-27 5.9E-32 253.0 5.2 267 379-737 13-282 (317)
67 1wwl_A Monocyte differentiatio 99.9 2.3E-27 7.9E-32 251.4 4.8 249 422-733 40-311 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.9 9.4E-25 3.2E-29 249.8 26.4 268 353-742 41-308 (622)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.9E-29 249.2 26.8 268 402-766 41-308 (622)
70 2p1m_B Transport inhibitor res 99.9 1.1E-27 3.8E-32 279.3 -0.4 190 8-215 46-245 (594)
71 3oja_A Leucine-rich immune mol 99.9 3.6E-26 1.2E-30 256.9 10.2 237 447-750 32-270 (487)
72 2p1m_B Transport inhibitor res 99.9 8.8E-28 3E-32 280.2 -3.0 383 301-755 103-519 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 8E-25 2.7E-29 227.8 19.3 209 520-783 28-241 (276)
74 2o6q_A Variable lymphocyte rec 99.9 5.1E-24 1.7E-28 220.6 21.0 206 498-783 17-222 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 9.8E-24 3.4E-28 219.5 20.9 208 498-760 29-242 (276)
76 1p9a_G Platelet glycoprotein I 99.9 5E-24 1.7E-28 222.4 18.6 208 493-784 6-213 (290)
77 3rfs_A Internalin B, repeat mo 99.9 4.4E-24 1.5E-28 221.3 12.9 207 494-764 38-244 (272)
78 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.6E-27 210.7 22.1 129 474-605 17-146 (270)
79 1p9a_G Platelet glycoprotein I 99.9 4.2E-22 1.4E-26 207.8 20.7 202 469-731 6-208 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.5E-27 211.0 14.8 210 469-742 37-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 1.8E-23 6.3E-28 226.4 6.4 67 671-737 226-303 (362)
82 3goz_A Leucine-rich repeat-con 99.9 1.8E-23 6.1E-28 226.5 6.2 256 454-759 3-301 (362)
83 2ca6_A RAN GTPase-activating p 99.9 1.9E-23 6.5E-28 228.8 4.7 239 467-759 26-320 (386)
84 3m19_A Variable lymphocyte rec 99.9 2.1E-21 7.3E-26 198.5 18.2 183 520-759 14-196 (251)
85 2xwt_C Thyrotropin receptor; s 99.9 9.2E-22 3.1E-26 199.7 14.3 196 521-776 32-236 (239)
86 4glp_A Monocyte differentiatio 99.9 2.2E-22 7.5E-27 212.9 9.0 109 497-605 91-210 (310)
87 2ast_B S-phase kinase-associat 99.9 2.4E-22 8.2E-27 215.9 9.4 250 451-762 49-313 (336)
88 2ca6_A RAN GTPase-activating p 99.9 4E-23 1.4E-27 226.2 3.2 188 494-735 91-320 (386)
89 3m19_A Variable lymphocyte rec 99.9 6.8E-21 2.3E-25 194.7 18.8 182 497-734 14-195 (251)
90 2xwt_C Thyrotropin receptor; s 99.9 4.5E-21 1.5E-25 194.7 15.8 195 498-752 32-236 (239)
91 1h6u_A Internalin H; cell adhe 99.8 1.4E-20 4.6E-25 198.5 18.0 192 496-756 40-231 (308)
92 4glp_A Monocyte differentiatio 99.8 7.6E-21 2.6E-25 201.1 14.6 225 328-557 65-307 (310)
93 2ast_B S-phase kinase-associat 99.8 1.9E-21 6.7E-26 208.8 9.3 245 474-779 48-306 (336)
94 1h6u_A Internalin H; cell adhe 99.8 9.9E-20 3.4E-24 191.9 19.6 192 4-219 40-231 (308)
95 3cvr_A Invasion plasmid antige 99.8 4.2E-20 1.4E-24 208.6 13.8 188 474-742 60-254 (571)
96 4ay9_X Follicle-stimulating ho 99.8 2.4E-19 8.2E-24 192.9 18.5 242 330-602 12-256 (350)
97 2v9t_B SLIT homolog 2 protein 99.8 1.2E-19 4E-24 180.9 13.0 114 671-784 57-170 (220)
98 4ay9_X Follicle-stimulating ho 99.8 5.8E-19 2E-23 189.9 18.2 238 281-527 12-253 (350)
99 2o6s_A Variable lymphocyte rec 99.8 2.3E-19 7.8E-24 177.7 13.9 160 544-764 28-187 (208)
100 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 201.7 16.1 195 450-718 60-254 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 3.3E-19 1.1E-23 177.7 14.5 113 671-783 58-170 (220)
102 2xot_A Amphoterin-induced prot 99.8 1.4E-19 4.9E-24 195.5 12.9 113 671-783 89-206 (361)
103 2o6s_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 174.5 15.3 84 520-603 76-159 (208)
104 3e6j_A Variable lymphocyte rec 99.8 2.4E-18 8.3E-23 172.6 16.2 110 672-782 66-175 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 4.6E-18 1.6E-22 169.3 14.6 89 671-759 82-170 (220)
106 1h6t_A Internalin B; cell adhe 99.8 8.2E-18 2.8E-22 175.5 16.9 82 670-757 134-215 (291)
107 2v9t_B SLIT homolog 2 protein 99.8 6.3E-18 2.2E-22 168.3 15.2 86 671-756 81-166 (220)
108 2xot_A Amphoterin-induced prot 99.7 4.5E-18 1.6E-22 183.7 13.3 177 500-732 21-203 (361)
109 1h6t_A Internalin B; cell adhe 99.7 2.8E-17 9.5E-22 171.4 17.1 173 26-219 42-214 (291)
110 1m9s_A Internalin B; cell inva 99.7 5.7E-18 1.9E-22 193.7 12.8 103 496-605 42-144 (605)
111 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.9E-22 191.2 15.3 193 500-761 24-216 (605)
112 3e6j_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 163.0 15.9 86 671-757 89-174 (229)
113 1w8a_A SLIT protein; signaling 99.7 2.6E-17 9E-22 160.0 12.2 114 671-784 30-144 (192)
114 1dce_A Protein (RAB geranylger 99.7 9E-20 3.1E-24 207.4 -6.2 77 671-749 487-567 (567)
115 2wfh_A SLIT homolog 2 protein 99.7 3.9E-17 1.3E-21 158.7 12.3 114 670-784 31-144 (193)
116 1xeu_A Internalin C; cellular 99.7 2.3E-17 7.8E-22 169.2 11.1 172 519-759 18-189 (263)
117 1w8a_A SLIT protein; signaling 99.7 5E-17 1.7E-21 158.1 11.8 89 671-759 55-143 (192)
118 4ezg_A Putative uncharacterize 99.7 7.1E-17 2.4E-21 157.9 12.3 81 671-755 113-194 (197)
119 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.6E-21 155.9 13.1 151 520-732 44-195 (197)
120 3sb4_A Hypothetical leucine ri 99.7 5.8E-17 2E-21 172.7 8.2 101 496-598 225-327 (329)
121 1dce_A Protein (RAB geranylger 99.7 1.7E-18 5.9E-23 196.8 -4.7 216 423-725 347-567 (567)
122 4b8c_D Glucose-repressible alc 99.7 2.8E-17 9.4E-22 193.1 4.6 117 473-612 173-289 (727)
123 1xeu_A Internalin C; cellular 99.6 2.6E-16 8.8E-21 161.3 10.4 170 424-607 18-187 (263)
124 4b8c_D Glucose-repressible alc 99.6 4.4E-17 1.5E-21 191.4 4.7 224 425-731 173-404 (727)
125 3sb4_A Hypothetical leucine ri 99.6 4.9E-16 1.7E-20 165.5 11.0 291 54-407 24-327 (329)
126 2o6r_A Variable lymphocyte rec 99.6 2.5E-15 8.5E-20 144.2 12.5 114 670-783 28-141 (177)
127 4fdw_A Leucine rich hypothetic 99.6 2.1E-14 7.3E-19 155.8 21.4 263 303-603 113-381 (401)
128 2ell_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 141.6 11.7 85 671-755 72-160 (168)
129 2ell_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 141.5 11.0 135 542-732 22-161 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 137.7 10.6 82 670-751 64-149 (149)
131 2wfh_A SLIT homolog 2 protein 99.6 1.3E-14 4.6E-19 140.7 14.1 87 670-756 54-140 (193)
132 4fdw_A Leucine rich hypothetic 99.6 8.1E-14 2.8E-18 151.3 21.1 268 425-753 113-381 (401)
133 2je0_A Acidic leucine-rich nuc 99.6 4.5E-15 1.5E-19 137.9 9.4 129 543-727 16-149 (149)
134 3g39_A Variable lymphocyte rec 99.6 9.2E-15 3.1E-19 138.7 10.7 110 671-783 10-119 (170)
135 4fs7_A Uncharacterized protein 99.5 1.5E-13 5.2E-18 150.1 20.4 332 315-745 59-391 (394)
136 2o6r_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 136.3 13.1 89 671-759 53-141 (177)
137 2r9u_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 135.9 10.9 108 673-783 15-122 (174)
138 1ds9_A Outer arm dynein; leuci 99.5 9E-16 3.1E-20 150.2 -1.6 155 540-755 14-185 (198)
139 4fs7_A Uncharacterized protein 99.5 8.4E-13 2.9E-17 144.2 20.7 311 273-602 66-376 (394)
140 3g39_A Variable lymphocyte rec 99.4 2.9E-13 1E-17 128.3 10.9 90 670-759 30-119 (170)
141 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.6E-18 130.3 9.8 83 671-755 65-153 (176)
142 1ds9_A Outer arm dynein; leuci 99.4 2.4E-15 8.3E-20 147.1 -4.7 153 564-777 14-183 (198)
143 1a9n_A U2A', U2A'; complex (nu 99.4 4.6E-13 1.6E-17 128.1 9.9 130 472-605 18-153 (176)
144 2r9u_A Variable lymphocyte rec 99.4 7.3E-13 2.5E-17 125.9 11.0 90 670-759 33-122 (174)
145 2ifg_A High affinity nerve gro 99.4 8.1E-13 2.8E-17 141.9 10.7 109 673-784 11-121 (347)
146 4gt6_A Cell surface protein; l 99.3 5.1E-11 1.8E-15 130.0 21.4 309 279-604 65-390 (394)
147 3un9_A NLR family member X1; l 99.3 4.4E-13 1.5E-17 144.1 0.4 49 689-737 206-258 (372)
148 4gt6_A Cell surface protein; l 99.3 2.5E-10 8.4E-15 124.6 22.3 161 342-509 53-217 (394)
149 3un9_A NLR family member X1; l 99.2 5.2E-13 1.8E-17 143.5 -0.4 163 30-194 72-253 (372)
150 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.8E-16 132.2 9.2 113 670-783 31-145 (347)
151 4h09_A Hypothetical leucine ri 99.1 7.9E-09 2.7E-13 112.1 23.3 289 273-577 41-342 (379)
152 4h09_A Hypothetical leucine ri 99.0 1.7E-08 5.9E-13 109.4 23.3 126 79-215 43-168 (379)
153 2ra8_A Uncharacterized protein 98.8 1.2E-08 4E-13 108.4 8.6 63 693-755 251-320 (362)
154 2ra8_A Uncharacterized protein 98.7 1E-08 3.5E-13 108.9 7.5 165 536-753 164-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 5.9E-08 2E-12 92.8 5.7 123 22-144 28-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 7.8E-08 2.7E-12 92.0 4.3 120 2-121 33-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.5E-12 94.1 3.4 45 78-122 166-210 (267)
158 3rw6_A Nuclear RNA export fact 98.3 4.9E-07 1.7E-11 90.6 6.4 66 692-759 168-237 (267)
159 3e4g_A ATP synthase subunit S, 97.9 3.1E-06 1.1E-10 78.3 2.9 84 108-191 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.9E-05 6.4E-10 73.1 3.2 83 671-753 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 6.2E-05 2.1E-09 66.5 5.5 41 744-784 33-73 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00012 4.2E-09 69.0 5.1 70 26-95 37-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.0002 6.8E-09 67.6 5.9 116 4-119 40-168 (197)
164 3rfe_A Platelet glycoprotein I 97.2 0.00039 1.3E-08 61.3 6.2 58 673-732 11-69 (130)
165 2lz0_A Uncharacterized protein 48.6 13 0.00045 30.1 3.4 46 531-577 7-52 (100)
166 2lz0_A Uncharacterized protein 45.1 39 0.0013 27.3 5.7 43 414-457 9-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-79 Score=732.82 Aligned_cols=672 Identities=29% Similarity=0.425 Sum_probs=490.2
Q ss_pred CCCEEecCCCCCCCCc---hhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCcccc--ccc--hhHHHHH
Q 042603 6 NLEELILVESDLHVSQ---LLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVE--VDT--SFLQIVS 78 (874)
Q Consensus 6 ~L~~L~Ls~~~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~--~~~~~~~ 78 (874)
+++.|+|+++.+ .+. ++..+..+++|+.++++.+.+.. ++ ..+.++++|++|++++|.+. ++. . +
T Consensus 51 ~v~~L~L~~~~l-~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----l 122 (768)
T 3rgz_A 51 KVTSIDLSSKPL-NVGFSAVSSSLLSLTGLESLFLSNSHING-SV-SGFKCSASLTSLDLSRNSLSGPVTTLTS-----L 122 (768)
T ss_dssp EEEEEECTTSCC-CEEHHHHHHHTTTCTTCCEEECTTSCEEE-CC-CCCCCCTTCCEEECCSSEEEEEGGGGGG-----G
T ss_pred cEEEEECCCCCc-CCccCccChhHhccCcccccCCcCCCcCC-Cc-hhhccCCCCCEEECCCCcCCCcCCChHH-----H
Confidence 466677777766 444 66667777777777777665532 22 35667777777777777665 333 3 5
Q ss_pred hcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhc---ccCCCCCCEEEccCCcCCCCCcccccCC
Q 042603 79 ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWC---LANMTSLQVLNVASNQLTGNFPPGFCEL 155 (874)
Q Consensus 79 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 155 (874)
+++++|++|++++|.+....+ ...+.++++|++|++++|++++..+.. +.++++|++|++++|.+.+..| +..+
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l 199 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSS-CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTC
T ss_pred hCCCCCCEEECcCCccCCcCC-HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccC
Confidence 667777777777776654221 122356677777777777776666655 5667777777777777665544 2566
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCcee
Q 042603 156 VLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF 235 (874)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l 235 (874)
++|++|++++|.+.+.+|. ++++++|++|++++|.+++.++. .+.++++|++|++++|.+.+.
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~--------------- 262 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGP--------------- 262 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEES---------------
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCc---------------
Confidence 7777777777777665555 66777777777777777665454 566677777777766655432
Q ss_pred ccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcc
Q 042603 236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL 315 (874)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l 315 (874)
+|.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+
T Consensus 263 ----------------------------------~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 263 ----------------------------------IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp ----------------------------------CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred ----------------------------------cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 2222 4567777778888777777777655567888888888888
Q ss_pred cccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCC-CcCEEEcccCcCCCCchh
Q 042603 316 FGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMK-MLKSLDISYNQLTGAIPE 394 (874)
Q Consensus 316 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~ 394 (874)
.+..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.+|..+.+++ +|++|++++|++++.+|.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 7777777888888888888888887777777555577888888888888777777777776 788888888887776666
Q ss_pred HHHh-cCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccc
Q 042603 395 RMAM-GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLL 473 (874)
Q Consensus 395 ~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 473 (874)
.+.. .+++|++|++++|.+++.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|..+..++
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 5542 256778888888887777777777778888888888887777777777777888888888887777777777777
Q ss_pred cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552 (874)
Q Consensus 474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls 552 (874)
+|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+. +++|++|++++|++++..|..+..+++|++|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 888888888887777777777777788888888877777776654 7777777777777777777777777777777777
Q ss_pred CccCCCCCchhhcCCCCCcEEEccCc----------------------cCcccCCccccCCCCCCEEEccCCcCCCCCCc
Q 042603 553 YNRLHGSIPNWIDKLPQLSYILLANN----------------------YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP 610 (874)
Q Consensus 553 ~n~l~~~~~~~~~~l~~L~~L~l~~n----------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 610 (874)
+|++++.+|.++.....+..+.+..+ .+.+..+..+..++.++.++++.|.++|.+|.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 77777777777666555444333221 12223333334444444445555555554444
Q ss_pred hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccc
Q 042603 611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI 690 (874)
Q Consensus 611 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~ 690 (874)
.+.. +++|+.|||++|+++|.+|..+
T Consensus 627 ~~~~------------------------------------------------------l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 627 TFDN------------------------------------------------------NGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp SCSS------------------------------------------------------SBCCCEEECCSSCCBSCCCGGG
T ss_pred hhhc------------------------------------------------------cccccEEECcCCcccccCCHHH
Confidence 3322 4589999999999999999999
Q ss_pred cccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCc
Q 042603 691 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEE 770 (874)
Q Consensus 691 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~ 770 (874)
+.+++|+.|+|++|+++|.+|+.|+++++|++||||+|+++|.+|+.++.+++|++|++++|+++|.+|.. +++.++..
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~ 731 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPP 731 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCG
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 89999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccc
Q 042603 771 DSYEGNPFLCGLPLSKSCDDNGLTTVT 797 (874)
Q Consensus 771 ~~~~gNp~~C~~~l~~~c~~~~~~~~~ 797 (874)
.+|.|||++||.|+. .|.......|.
T Consensus 732 ~~~~gN~~Lcg~~l~-~C~~~~~~~~~ 757 (768)
T 3rgz_A 732 AKFLNNPGLCGYPLP-RCDPSNADGYA 757 (768)
T ss_dssp GGGCSCTEEESTTSC-CCCSCC-----
T ss_pred HHhcCCchhcCCCCc-CCCCCccCCCC
Confidence 999999999999987 89866655543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.5e-71 Score=658.43 Aligned_cols=658 Identities=26% Similarity=0.356 Sum_probs=485.4
Q ss_pred CCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchh--cccCCC
Q 042603 55 KNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLW--CLANMT 132 (874)
Q Consensus 55 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~--~~~~l~ 132 (874)
.+++.|+++++.+......+...+..+++|+.++++.+.+.. .+..++++++|++|++++|.+++.+|. .+++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~---l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING---SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE---CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC---CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 345555555554431111122235555666666665554422 345666677777777777776666665 667777
Q ss_pred CCCEEEccCCcCCCCCcccc-cCCCCCCEEEccCCcCCCCcccc---ccCCCCCCEEEcccccccccCCccccCCCCCCC
Q 042603 133 SLQVLNVASNQLTGNFPPGF-CELVLLRELYIDNNDLRGSLPLC---LANLTSLRVLDVSYNQLTENISSSPLMHLTSIE 208 (874)
Q Consensus 133 ~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 208 (874)
+|++|++++|.+.+..|..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+++.++ +..+++|+
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~ 203 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLE 203 (768)
T ss_dssp TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCC
T ss_pred CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCC
Confidence 77777777776666666554 56677777777777766655555 5666777777777776665332 35566666
Q ss_pred EEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCC
Q 042603 209 ELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHL 288 (874)
Q Consensus 209 ~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 288 (874)
+|++++|.+.+ .+|. ++.+++|++|++++|
T Consensus 204 ~L~Ls~n~l~~-------------------------------------------------~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 204 FLDVSSNNFST-------------------------------------------------GIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp EEECCSSCCCS-------------------------------------------------CCCB-CTTCCSCCEEECCSS
T ss_pred EEECcCCcCCC-------------------------------------------------CCcc-cccCCCCCEEECcCC
Confidence 66666665543 3333 455566666666666
Q ss_pred CCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCccc
Q 042603 289 NLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI 368 (874)
Q Consensus 289 ~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~ 368 (874)
.+.+.+|..+ ..+++|++|++++|.+.+..+.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+
T Consensus 234 ~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 234 KLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred cCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 6665555554 56666777777777666655543 67778888888888777777777665678888888888888888
Q ss_pred chhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCC-CCCeEEccCCcCcccCCccccc
Q 042603 369 PSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT-NLKRLQLDGNKFIGEIPESLSK 447 (874)
Q Consensus 369 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~ 447 (874)
|..|.++++|++|++++|.+++.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++..|..+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 888888888888888888888778877666788888888888888877887777776 8888888888888777777665
Q ss_pred --cCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccE
Q 042603 448 --CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQ 524 (874)
Q Consensus 448 --~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~ 524 (874)
+++|++|++++|.+++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+. +++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 77888888888888888888888888888888888888888888888888899999999888888877654 788999
Q ss_pred EEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcC
Q 042603 525 VHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604 (874)
Q Consensus 525 L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l 604 (874)
|++++|++++..|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.||+++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCc-cceEEEEecCcccccccccccCcceEEcCCCccc
Q 042603 605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGK-EETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT 683 (874)
Q Consensus 605 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 683 (874)
+|.+|.+++............... ..++......... .........+.... ....++.+..++++.|.++
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKR--------YVYIKNDGMKKECHGAGNLLEFQGIRSE-QLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCE--------EEEEECCSCCTTCCSSEEEEECTTCCGG-GGGGGGGTCCSCTTSCEEE
T ss_pred CCcCChHHhcccchhhhhcccccc--------ccccccccccccccccccccccccccch-hhhccccccccccccceec
Confidence 999998876643111100000000 0000000000000 00000000110000 0112456667889999999
Q ss_pred ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccc
Q 042603 684 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA 763 (874)
Q Consensus 684 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 763 (874)
|.+|..++.+++|++|||++|+++|.+|..|+++++|+.|||++|+++|.+|+.++++++|+.||+++|+++|.+|..+.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCCC
Q 042603 764 QFSTFEEDSYEGNPFLC 780 (874)
Q Consensus 764 ~~~~l~~~~~~gNp~~C 780 (874)
.++.++.+++++|+...
T Consensus 702 ~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GCCCCSEEECCSSEEEE
T ss_pred CCCCCCEEECcCCcccc
Confidence 99999999999998654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-60 Score=565.39 Aligned_cols=572 Identities=22% Similarity=0.253 Sum_probs=324.1
Q ss_pred CCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEE
Q 042603 82 ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLREL 161 (874)
Q Consensus 82 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 161 (874)
+++++|++++|.++.. .+..|+++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCc--CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 4566666666665542 23445566666666666666665555556666666666666666654433455666666666
Q ss_pred EccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceecccccc
Q 042603 162 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYA 241 (874)
Q Consensus 162 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~ 241 (874)
++++|.+++..|..|+++++|++|++++|.+++..+. .+.++++|++|++++|.+++
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~---------------------- 159 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA---------------------- 159 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC----------------------
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc----------------------
Confidence 6666666555555566666666666666665543222 45555556655555554432
Q ss_pred ccccccCCCCCCceeeEEEccCCCCCCCCChhc--cCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccc
Q 042603 242 ETESHYNSLTPKFQLTSISLSGYGDGGTFPKFL--YHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSF 319 (874)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~ 319 (874)
..+..+ ..+++|++|++++|.+.+..|..+ ..+++|+.+++.++.+....
T Consensus 160 ---------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~~~~ 211 (680)
T 1ziw_A 160 ---------------------------LKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSL 211 (680)
T ss_dssp ---------------------------BCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCHHHH
T ss_pred ---------------------------cCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhhhhhccccccChhh
Confidence 111111 123445555555555554333332 34455555555544433211
Q ss_pred cCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCC--cCEEEcccCcCCCCchhHHH
Q 042603 320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKM--LKSLDISYNQLTGAIPERMA 397 (874)
Q Consensus 320 ~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~~~ 397 (874)
...+ +... ..++|++|++++|.+++..|..|.+++. |++|++++|++++..+.. +
T Consensus 212 ~~~~--------------------~~~l--~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~ 268 (680)
T 1ziw_A 212 TEKL--------------------CLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-F 268 (680)
T ss_dssp HHHH--------------------HHHH--TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-T
T ss_pred HHHH--------------------HHHh--hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-c
Confidence 1000 0000 0234455555555544444444444432 555555555544222222 2
Q ss_pred hcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcc-----cCC----ccccccCCCCeEEccCCcCCCCCchh
Q 042603 398 MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIG-----EIP----ESLSKCYLLGGLYLSDNHLSGKIPRW 468 (874)
Q Consensus 398 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~ 468 (874)
..+++|++|++++|.+++..+..+..+++|+.|++++|...+ .+| ..+..+++|++|++++|.+.+..+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 234455555555555554444444455555555554443221 111 13445555555555555555555555
Q ss_pred hhccccCCeeecCCCcccc--cCCccccC--CCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccc-hhhhhc
Q 042603 469 LGSLLALQDIIMPNNNLEG--PIPNEFCQ--LDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQL-ESIIHY 542 (874)
Q Consensus 469 ~~~l~~L~~L~l~~n~l~~--~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~-~~~~~~ 542 (874)
|..+++|++|++++|.+.. .....|.. .++|+.|++++|++++..|..+. +++|+.|++++|.+++.. +..|..
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 5555555555555554321 11122222 13566666666666555554443 556666666666665433 245666
Q ss_pred CCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc--ccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccc
Q 042603 543 YPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE--GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEG 620 (874)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 620 (874)
+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..|..+..
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------ 502 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG------ 502 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT------
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc------
Confidence 666666666666666555566666666666666666654 345566666666666666666665333322222
Q ss_pred cccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC--------Cccccc
Q 042603 621 YYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI--------PTQIGY 692 (874)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~--------p~~~~~ 692 (874)
+++|+.|++++|++++.. +..|++
T Consensus 503 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 503 ------------------------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred ------------------------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 235666666666665432 224778
Q ss_pred cccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccc-cCCCCCcc
Q 042603 693 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVA-QFSTFEED 771 (874)
Q Consensus 693 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~-~~~~l~~~ 771 (874)
+++|++|+|++|+++.+.+..|+++++|+.|||++|++++..+..+..+++|+.|++++|++++.+|..+. .+++++.+
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l 614 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence 88899999999999866666788999999999999999977777788889999999999999988887666 68889999
Q ss_pred cccCCCCCCCCC
Q 042603 772 SYEGNPFLCGLP 783 (874)
Q Consensus 772 ~~~gNp~~C~~~ 783 (874)
++.||||.|+|+
T Consensus 615 ~l~~N~~~c~c~ 626 (680)
T 1ziw_A 615 DMRFNPFDCTCE 626 (680)
T ss_dssp ECTTCCCCBCCC
T ss_pred EccCCCcccCCc
Confidence 999999999665
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-58 Score=546.20 Aligned_cols=604 Identities=22% Similarity=0.179 Sum_probs=463.8
Q ss_pred CEEEccCCcccccccCccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCc
Q 042603 33 KYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQ 111 (874)
Q Consensus 33 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 111 (874)
+.++++++.++ .+|. .+. +++++|++++|.+. ++.. .+.++++|++|++++|.+++. .+..++++++|+
T Consensus 7 ~~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~ 76 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPD-DLP--TNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKL--EPELCQKLPMLK 76 (680)
T ss_dssp SEEECCSSCCS-SCCS-CSC--TTCSEEECCSSCCCCCCGG----GGGGGTTCSEEECCSSCCCCC--CTTHHHHCTTCC
T ss_pred CeeECCCCCcc-cccc-ccC--CCCcEEECCCCCCCCcCHH----HHhCCCcCcEEECCCCccCcc--CHHHHhcccCcC
Confidence 67899998885 5653 333 78999999999987 3332 278999999999999999874 457899999999
Q ss_pred EEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEccccc
Q 042603 112 ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191 (874)
Q Consensus 112 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 191 (874)
+|++++|.+++..+.+|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.
T Consensus 77 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 99999999998877789999999999999999998877899999999999999999999889999999999999999999
Q ss_pred ccccCCccccC--CCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCC
Q 042603 192 LTENISSSPLM--HLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGT 269 (874)
Q Consensus 192 l~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 269 (874)
+++ ++...+. .+++|++|++++|.+.+ .
T Consensus 157 l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------------------------------~ 186 (680)
T 1ziw_A 157 IQA-LKSEELDIFANSSLKKLELSSNQIKE-------------------------------------------------F 186 (680)
T ss_dssp CCC-BCHHHHGGGTTCEESEEECTTCCCCC-------------------------------------------------B
T ss_pred ccc-cCHHHhhccccccccEEECCCCcccc-------------------------------------------------c
Confidence 987 4432433 45777777777776543 2
Q ss_pred CChhccCCCCCCEEEcCCCCCcccCCcchh--cCCCCCCEEEccCCcccccccCCccCCCc--ccEEEccCCcCCccCCh
Q 042603 270 FPKFLYHQHDLNNADLSHLNLSGEFPNWLP--ENNTDLKTLLLANNSLFGSFRMPIHCLQK--LATLDVSNNFFLGHIPV 345 (874)
Q Consensus 270 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~~i~~ 345 (874)
.|..+..+++|+.++++++.+.+.....+. ...++|++|++++|.+.+..+..+..++. |++|++++|.+.+..|
T Consensus 187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~- 265 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN- 265 (680)
T ss_dssp CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-
T ss_pred ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-
Confidence 334445555666666666665432221111 13467888888888888887777777755 8888888888874443
Q ss_pred hhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCC
Q 042603 346 EIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLT 425 (874)
Q Consensus 346 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 425 (874)
..+..+++|++|++++|.+.+..|..|.++++|++|++++|...+.++.. .+.......+..++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~----------------~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA----------------SLPKIDDFSFQWLK 329 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------------CCEECTTTTTTCT
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc----------------cccccChhhcccCC
Confidence 44455788999999999888888888888888999988887655322210 01111122344566
Q ss_pred CCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC--CCchhhhcc--ccCCeeecCCCcccccCCccccCCCCCCE
Q 042603 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG--KIPRWLGSL--LALQDIIMPNNNLEGPIPNEFCQLDCLKV 501 (874)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 501 (874)
+|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..+ ++|+.|++++|++.+..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 66666666666666666666666666666666665432 111223322 47888888888888888888888888888
Q ss_pred EECcCCcCcccCCC-C-CCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCC--CCCchhhcCCCCCcEEEccC
Q 042603 502 LDLSNNSIFGTLPS-C-LSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLH--GSIPNWIDKLPQLSYILLAN 577 (874)
Q Consensus 502 L~L~~n~l~~~~~~-~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~l~~ 577 (874)
|++++|++.+.+|. . ..+++|++|++++|++++..+..|..+++|+.|++++|.+. +..|.++..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 88888888776653 2 34788889999999888888888999999999999999987 56788899999999999999
Q ss_pred ccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEe
Q 042603 578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTT 657 (874)
Q Consensus 578 n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (874)
|++++..+..+.++++|+.|++++|++++..+..+.... .
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-------------------------~--------------- 529 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP-------------------------I--------------- 529 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-------------------------C---------------
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc-------------------------c---------------
Confidence 999988888899999999999999998742211110000 0
Q ss_pred cCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChh
Q 042603 658 KNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 737 (874)
Q Consensus 658 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 737 (874)
.....+++|+.|++++|+++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..
T Consensus 530 ------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 530 ------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp ------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 00012568999999999999655567999999999999999999888888999999999999999999998888
Q ss_pred hh-cCCCCCeEEccCCCCcccCC
Q 042603 738 LI-VLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 738 l~-~l~~L~~l~ls~N~l~~~~p 759 (874)
+. .+++|+.+++++|++.+..+
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCCC
T ss_pred hcccccccCEEEccCCCcccCCc
Confidence 87 88999999999999988665
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-57 Score=546.00 Aligned_cols=539 Identities=22% Similarity=0.198 Sum_probs=349.7
Q ss_pred CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCC-cccccCCCCCCEEEc
Q 042603 85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNF-PPGFCELVLLRELYI 163 (874)
Q Consensus 85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L 163 (874)
+..+.++++++. +|. -.+++++|++++|.+++..+..|.++++|++|+|++|...+.+ |..|.++++|++|+|
T Consensus 7 ~~~dcs~~~L~~---vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQ---VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSC---CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCC---CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 356666676665 233 4567888888888888777788888888888888888554444 667888888888888
Q ss_pred cCCcCCCCccccccCCCCCCEEEcccccccccCCc-cccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccc
Q 042603 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS-SPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAE 242 (874)
Q Consensus 164 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~ 242 (874)
++|.+.+..|..|+++++|++|+|++|.+++.++. ..+.++++|++|++++|.+.+.
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---------------------- 138 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL---------------------- 138 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----------------------
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc----------------------
Confidence 88888877788888888888888888888764443 2377777888888777765421
Q ss_pred cccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCC--CCCCEEEccCCccccccc
Q 042603 243 TESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENN--TDLKTLLLANNSLFGSFR 320 (874)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l--~~L~~L~L~~n~l~~~~~ 320 (874)
..+..++++++|++|++++|.+.+..|..+ ..+ ++|+.|++++|.+.+..+
T Consensus 139 --------------------------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 139 --------------------------YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp --------------------------CCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCC
T ss_pred --------------------------ccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccc
Confidence 122456677788888888888876666554 333 677777777777776666
Q ss_pred CCccCCCc------ccEEEccCCcCCccCChhhhcCC--CCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCc
Q 042603 321 MPIHCLQK------LATLDVSNNFFLGHIPVEIGTYL--PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAI 392 (874)
Q Consensus 321 ~~~~~l~~------L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 392 (874)
..+..+.+ |++|++++|.+.+.++..+...+ +.++.+.++.+.+... ...+.+.+ .
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~-~ 255 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKD-P 255 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTT-G
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCC-C
Confidence 55554444 66777777766655555444322 3455565554332210 11222221 1
Q ss_pred hhHHHhc--CCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhh
Q 042603 393 PERMAMG--CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLG 470 (874)
Q Consensus 393 ~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 470 (874)
....+.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+++..|..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 1111222 25677777777777766666667777777777777777766666677777777777777777666666677
Q ss_pred ccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEE
Q 042603 471 SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD 550 (874)
Q Consensus 471 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 550 (874)
.+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++. +. +++|+.|++++|+++.+... ..+++.|+
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~N~l~~l~~~----~~~l~~L~ 407 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSGNKLVTLPKI----NLTANLIH 407 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEESCCCCCCCCC----CTTCCEEE
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCCCCccccccc----ccccceee
Confidence 777777777777777666666666667777777777666522 11 45566666666665543221 23455555
Q ss_pred ccCccCCCCC-chhhcCCCCCcEEEccCccCcccCCc-cccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCC
Q 042603 551 LSYNRLHGSI-PNWIDKLPQLSYILLANNYIEGEIPV-QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT 628 (874)
Q Consensus 551 Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~ 628 (874)
+++|++++.. +..+..+++|++|++++|++++..+. .+..++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------ 451 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP------------------------------------ 451 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT------------------------------------
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC------------------------------------
Confidence 5555555422 12233444555555555544432221 122333
Q ss_pred ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccc-----ccCCccccccccCCeEecCC
Q 042603 629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT-----GEIPTQIGYLTRIRALNLSH 703 (874)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~ 703 (874)
+|+.|++++|.++ +..|..|..+++|++|+|++
T Consensus 452 ------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 452 ------------------------------------------SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp ------------------------------------------TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred ------------------------------------------ccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 4555555555554 34456677788888888888
Q ss_pred cccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 704 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
|++++.+|..|.++++|+.|||++|+|++..|..+. ++|+.|++++|++++.+|..+ ..+..+++.||||.|+|+
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 888888888888888888888888888877666655 778888888888888888653 467778888888888776
Q ss_pred CC
Q 042603 784 LS 785 (874)
Q Consensus 784 l~ 785 (874)
+.
T Consensus 565 ~~ 566 (844)
T 3j0a_A 565 LS 566 (844)
T ss_dssp CC
T ss_pred cH
Confidence 53
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.6e-55 Score=510.99 Aligned_cols=536 Identities=19% Similarity=0.185 Sum_probs=304.0
Q ss_pred EEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccC
Q 042603 86 ILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDN 165 (874)
Q Consensus 86 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 165 (874)
.++.++..++. +|..+. +++++|++++|.+++..+.+|+++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 16 ~~~c~~~~l~~---iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 16 TYNCENLGLNE---IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp EEECTTSCCSS---CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEECCCCCccc---CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 44444444443 233332 2566777777777666666677777777777777776666666677777777777777
Q ss_pred CcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceecccccccccc
Q 042603 166 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETES 245 (874)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~ 245 (874)
|++++..|..|+++++|++|++++|.+++ ++...+.++++|++|++++|.+.+..
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~------------------------ 145 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIK------------------------ 145 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred CcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccC------------------------
Confidence 77666666667777777777777776665 32225666666666666666543200
Q ss_pred ccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCC--EEEccCCcccccccCCc
Q 042603 246 HYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLK--TLLLANNSLFGSFRMPI 323 (874)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~--~L~L~~n~l~~~~~~~~ 323 (874)
.|... .+++|++|++++|.+.+..|.. +..+++|+ .|++++|.+.+..+..+
T Consensus 146 ------------------------~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 146 ------------------------LPKGF-PTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp ------------------------CCTTC-CCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred ------------------------ccccc-CCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHh
Confidence 01111 1334444444444444222222 23444444 44555555444444333
Q ss_pred cCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCC----CCchhHHHhc
Q 042603 324 HCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT----GAIPERMAMG 399 (874)
Q Consensus 324 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~----~~~~~~~~~~ 399 (874)
.. .+|++|++++| . ..+..+..+.++....+.-..+. ..++...+.+
T Consensus 200 ~~-~~L~~L~l~~~-------------------------~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 200 DS-AVFQSLNFGGT-------------------------Q---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp TT-CEEEEEECTTC-------------------------S---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hh-ccccccccCCc-------------------------h---hHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 22 34444444444 3 12222222222222222111111 0111222222
Q ss_pred CC--CCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCe
Q 042603 400 CF--SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQD 477 (874)
Q Consensus 400 ~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 477 (874)
+. +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 22 5666666666666666655666666666666666665 45555666666666666666666555555666666666
Q ss_pred eecCCCcccccCCc-cccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccC
Q 042603 478 IIMPNNNLEGPIPN-EFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRL 556 (874)
Q Consensus 478 L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 556 (874)
|++++|.+.+.++. .+..+++|++|++++|++.+..+ .+..+..+++|++|++++|++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC---------------------CNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE---------------------STTTTTTCTTCCEEECCSCSC
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccC---------------------cchhcccCCCCCEEECCCCcC
Confidence 66666655543332 35555555555555555544320 033444455555555555555
Q ss_pred CCCCchhhcCCCCCcEEEccCccCcccCCcc-ccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCC
Q 042603 557 HGSIPNWIDKLPQLSYILLANNYIEGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAP 635 (874)
Q Consensus 557 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~ 635 (874)
.+..|..+..+++|++|++++|++.+..+.. +..+++|+.|++++|.+++..|..+..
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------- 447 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------------- 447 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT---------------------
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC---------------------
Confidence 5444555555555555555555555443332 555555555555555555444433322
Q ss_pred CcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc---CCccccccccCCeEecCCcccccchhh
Q 042603 636 ALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE---IPTQIGYLTRIRALNLSHNNLTGTIPT 712 (874)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 712 (874)
+++|+.|++++|.+++. .+..++.+++|++|+|++|++++..|.
T Consensus 448 ---------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 448 ---------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp ---------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred ---------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 23555566666665542 235577777888888888888877777
Q ss_pred hccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 713 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 713 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
.|+++++|++|||++|++++.+|..+..++.| .|++++|++++.+|..+..+++++.+++.||||.|+|+
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 88888888888888888888888888888888 88888888887777777777888888888888888654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-52 Score=490.68 Aligned_cols=537 Identities=18% Similarity=0.186 Sum_probs=406.0
Q ss_pred EEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEE
Q 042603 59 HLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVL 137 (874)
Q Consensus 59 ~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 137 (874)
+++.++..+. +|.. -.+.+++|++++|.++.. .+..|+++++|++|++++|++++..|.+|+++++|++|
T Consensus 16 ~~~c~~~~l~~iP~~-------l~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 16 TYNCENLGLNEIPGT-------LPNSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL 86 (606)
T ss_dssp EEECTTSCCSSCCTT-------SCTTCCEEECTTCCCSEE--CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred eEECCCCCcccCcCC-------CCCcCcEEEccCCccCcC--ChhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence 4555555544 4433 234689999999988763 35788999999999999999998889999999999999
Q ss_pred EccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccccc
Q 042603 138 NVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHF 217 (874)
Q Consensus 138 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~ 217 (874)
++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|++++ ++...+..+++|++|++++|.+
T Consensus 87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCC
T ss_pred eCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcc
Confidence 999999998888899999999999999999998778889999999999999999986 3322455689999999988876
Q ss_pred ccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCC--EEEcCCCCCcccCC
Q 042603 218 QIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN--NADLSHLNLSGEFP 295 (874)
Q Consensus 218 ~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~n~l~~~~p 295 (874)
.+ ..|..++.+++|+ .+++++|.+.+..|
T Consensus 166 ~~-------------------------------------------------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 166 HY-------------------------------------------------LSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp CE-------------------------------------------------ECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cc-------------------------------------------------cChhhhhhhcccceeEEecCCCccCccCh
Confidence 53 1234455566677 78888888887666
Q ss_pred cchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCC
Q 042603 296 NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADM 375 (874)
Q Consensus 296 ~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 375 (874)
..+ ....|++|++++|.. .+..+..+.+++...+....+. .+....+. +..|..+
T Consensus 197 ~~~--~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~------------~~~~~~i~--------~~~~~~l 251 (606)
T 3t6q_A 197 GAF--DSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFE------------DMDDEDIS--------PAVFEGL 251 (606)
T ss_dssp TTT--TTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCT------------TSCCCCCC--------GGGGGGG
T ss_pred hHh--hhccccccccCCchh---HHHHhhhccccchhheechhhc------------cccccccC--------hhHhchh
Confidence 553 446899999999863 2223333444433333322111 11111111 2222222
Q ss_pred C--CcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCe
Q 042603 376 K--MLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGG 453 (874)
Q Consensus 376 ~--~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 453 (874)
. +|+.|++++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++
T Consensus 252 ~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 252 CEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 2 6888889998888 455555567899999999999998 56777889999999999999999888889999999999
Q ss_pred EEccCCcCCCCCch-hhhccccCCeeecCCCcccccC--CccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCc
Q 042603 454 LYLSDNHLSGKIPR-WLGSLLALQDIIMPNNNLEGPI--PNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKN 530 (874)
Q Consensus 454 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 530 (874)
|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|.
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------- 394 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE--------------- 394 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---------------
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---------------
Confidence 99999999866654 5899999999999999998765 66777888888888877777655444
Q ss_pred ccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCC-
Q 042603 531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHI- 608 (874)
Q Consensus 531 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 608 (874)
.+..+++|++|++++|++.+..| .++..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..
T Consensus 395 --------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 395 --------AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp --------TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred --------HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence 34445555566666666554443 23566666666666666666666666666777777777777765421
Q ss_pred C--chhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC
Q 042603 609 P--PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI 686 (874)
Q Consensus 609 p--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 686 (874)
| ..+.. +++|+.|++++|++++..
T Consensus 467 ~~~~~~~~------------------------------------------------------l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 467 QKTNSLQT------------------------------------------------------LGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CSSCGGGG------------------------------------------------------CTTCCEEECTTSCCCEEC
T ss_pred ccchhhcc------------------------------------------------------CCCccEEECCCCccCccC
Confidence 1 11111 457888889999888888
Q ss_pred CccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603 687 PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 687 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 759 (874)
|..|+.+++|+.|+|++|++++..|+.|.++++| .||+++|++++.+|..+..+++|+.+++++|++.+..+
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8999999999999999999999999999999999 99999999999888889999999999999999987655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-53 Score=497.28 Aligned_cols=539 Identities=18% Similarity=0.200 Sum_probs=395.4
Q ss_pred CEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcc
Q 042603 85 RILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYID 164 (874)
Q Consensus 85 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 164 (874)
+.++.+++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 14 ~~~~c~~~~l~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLSK---VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCSS---CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEccCCCccc---CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 456666666654 233322 566666666666666666666666666666666666666556666666666666666
Q ss_pred CCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccc
Q 042603 165 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETE 244 (874)
Q Consensus 165 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~ 244 (874)
+|.+++..|..|+++++|++|++++|.+++ ++...++++++|++|++++|.+
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l--------------------------- 140 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFI--------------------------- 140 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCC---------------------------
T ss_pred CCcccccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcc---------------------------
Confidence 666666556666666666666666666654 3322455556666665555543
Q ss_pred cccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcc-cCCcchhcCCCCCCEEEccCCcccccccCCc
Q 042603 245 SHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSG-EFPNWLPENNTDLKTLLLANNSLFGSFRMPI 323 (874)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~ 323 (874)
.+ .+|..+ ..+++|++|++++|.+.+..+..+
T Consensus 141 ----------------------------------------------~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 141 ----------------------------------------------HSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp ----------------------------------------------CCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTT
T ss_pred ----------------------------------------------cceechHhH-hhcCCCCEEEccCCcceecChhhh
Confidence 22 344443 577888888888888888777777
Q ss_pred cCCCccc----EEEccCCcCCccCChhhhcCCCCCcEEEccCCcCC-cccchhccCCCCcCEEEcccCcCCCCchhHHHh
Q 042603 324 HCLQKLA----TLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFN-GSIPSSFADMKMLKSLDISYNQLTGAIPERMAM 398 (874)
Q Consensus 324 ~~l~~L~----~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 398 (874)
..+++|+ ++++++|.+. .++...+... +|++|++++|.+. +..|..+.++++|+.+++..+.+.+..
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~------ 245 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER------ 245 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC------
T ss_pred hhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC------
Confidence 6666554 7888888876 5565555533 7888888887775 456667777777777777655443110
Q ss_pred cCCCCCEEEcccCcccccCCccccCCCCCCeEEc-cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCe
Q 042603 399 GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL-DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQD 477 (874)
Q Consensus 399 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 477 (874)
.+.. +....+..+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..+++|+.
T Consensus 246 ---~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~ 311 (606)
T 3vq2_A 246 ---NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQS 311 (606)
T ss_dssp ---CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSE
T ss_pred ---cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCE
Confidence 0000 001111111122 3555566 55666666665 777788888888888876 445 6777888888
Q ss_pred eecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccc--hhhhhcCCCCcEEEccCcc
Q 042603 478 IIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL--ESIIHYYPYLVTLDLSYNR 555 (874)
Q Consensus 478 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~ 555 (874)
|++++|.+ +.+| .+ .+++|+.|++++|+..+.. ....+++|++|++++|++++.. +..+..+++|++|++++|.
T Consensus 312 L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 312 LSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp EEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred EEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 88888888 4666 44 7888888888888665544 3445788999999999888774 7788999999999999999
Q ss_pred CCCCCchhhcCCCCCcEEEccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCC
Q 042603 556 LHGSIPNWIDKLPQLSYILLANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASA 634 (874)
Q Consensus 556 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~ 634 (874)
+++ +|..+..+++|++|++++|++.+..| ..+..+++|+.|++++|.+++..|..+..
T Consensus 388 l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------- 446 (606)
T 3vq2_A 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-------------------- 446 (606)
T ss_dssp EEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------
T ss_pred ccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC--------------------
Confidence 885 66788999999999999999998877 68899999999999999998777766544
Q ss_pred CCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEecCCcccccchhhh
Q 042603 635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPTT 713 (874)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 713 (874)
+++|+.|++++|.+++ .+|..++.+++|++|+|++|++++..|..
T Consensus 447 ----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 447 ----------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp ----------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ----------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 3489999999999998 47999999999999999999999999999
Q ss_pred ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCC-CCCcccccCCCCCCCCCCC
Q 042603 714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGLPLS 785 (874)
Q Consensus 714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~~C~~~l~ 785 (874)
|+++++|++|+|++|++++.+|..+..+++|+.|++++|++++ +|..+..++ +++.+++.|||+.|+|++.
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999999999999999999999999999995 455478886 5999999999999987753
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-52 Score=485.78 Aligned_cols=531 Identities=19% Similarity=0.160 Sum_probs=341.8
Q ss_pred CcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCC
Q 042603 57 LEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQ 135 (874)
Q Consensus 57 L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 135 (874)
-++++++++.+. +|.. -.+++++|++++|.++.. .+..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus 13 ~~~~~c~~~~l~~ip~~-------~~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDD-------IPSSTKNIDLSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp TTEEECTTSCCSSCCTT-------SCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCceEccCCCcccCCCC-------CCCCcCEEECCCCCcCEe--ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 467899888877 5654 348999999999999863 346899999999999999999998899999999999
Q ss_pred EEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccc-cCCccccCCCCCCCEEEccc
Q 042603 136 VLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSN 214 (874)
Q Consensus 136 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~ 214 (874)
+|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|++|++++
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSY 162 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCS
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccC
Confidence 99999999998889999999999999999999998887889999999999999999986 4566 799999999999999
Q ss_pred cccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCC----CCEEEcCCCCC
Q 042603 215 NHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHD----LNNADLSHLNL 290 (874)
Q Consensus 215 n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----L~~L~l~~n~l 290 (874)
|.+.+..+ ..++.+.+ +..+++++|.+
T Consensus 163 n~l~~~~~-------------------------------------------------~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 163 NYIQTITV-------------------------------------------------NDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp SCCCEECT-------------------------------------------------TTTHHHHHCTTCCCEEECTTCCC
T ss_pred CcceecCh-------------------------------------------------hhhhhhhccccccceeeccCCCc
Confidence 97763211 11111111 33556666655
Q ss_pred cccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCc----
Q 042603 291 SGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG---- 366 (874)
Q Consensus 291 ~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~---- 366 (874)
. +..+..+... +|++|++++|.+.+......+..+++++.+++..+.+.+
T Consensus 194 ~-------------------------~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 194 D-------------------------FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp C-------------------------EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred c-------------------------eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 5 3333333222 455555555544322222223334455555443332221
Q ss_pred --ccchhccCCC--CcCEEEc-ccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccC
Q 042603 367 --SIPSSFADMK--MLKSLDI-SYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEI 441 (874)
Q Consensus 367 --~~~~~~~~l~--~L~~L~l-~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 441 (874)
..+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+... + .+..+++|++|++++|++ +.+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-ccc
Confidence 1111111111 2334444 44444444443 23344555555555554332 2 344455555555555555 344
Q ss_pred CccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccccc--CCccccCCCCCCEEECcCCcCcccCCCCCCC
Q 042603 442 PESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGP--IPNEFCQLDCLKVLDLSNNSIFGTLPSCLSL 519 (874)
Q Consensus 442 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 519 (874)
| .+ .+++|++|++++|...+.. .+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus 323 p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~--------- 389 (606)
T 3vq2_A 323 P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--------- 389 (606)
T ss_dssp C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE---------
T ss_pred c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc---------
Confidence 4 22 4555555555555332222 334455555555555555433 2444455555555555555544
Q ss_pred CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEE
Q 042603 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLID 598 (874)
Q Consensus 520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 598 (874)
+.. ..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|..+..+++|+.|+
T Consensus 390 --------------~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 390 --------------IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp --------------EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred --------------cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 322 334455555566666665555544 4555666666666666666655666666666666666
Q ss_pred ccCCcCCCC-CCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEc
Q 042603 599 LSHNNLSGH-IPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDL 677 (874)
Q Consensus 599 Ls~N~l~~~-~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 677 (874)
+++|++++. +|..+.. +++|+.|++
T Consensus 455 l~~n~l~~~~~~~~~~~------------------------------------------------------l~~L~~L~L 480 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFAN------------------------------------------------------TTNLTFLDL 480 (606)
T ss_dssp CTTCEEGGGEECSCCTT------------------------------------------------------CTTCCEEEC
T ss_pred CCCCcCCCcchHHhhcc------------------------------------------------------CCCCCEEEC
Confidence 666666542 3333222 246777777
Q ss_pred CCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC-CCCeEEccCCCCcc
Q 042603 678 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRVAYNNLSG 756 (874)
Q Consensus 678 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~l~ls~N~l~~ 756 (874)
++|++++..|..++.+++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|+.+..++ +|+.+++++|++.+
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 777777777888888888888888888888888888888888999999999888 5666688886 58899999998887
Q ss_pred cCCC
Q 042603 757 KIPD 760 (874)
Q Consensus 757 ~~p~ 760 (874)
..+.
T Consensus 560 ~c~~ 563 (606)
T 3vq2_A 560 ICEH 563 (606)
T ss_dssp SSTT
T ss_pred CCcc
Confidence 6553
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-52 Score=500.76 Aligned_cols=557 Identities=21% Similarity=0.176 Sum_probs=386.3
Q ss_pred cEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcc-hhcccCCCCCC
Q 042603 58 EHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSL-LWCLANMTSLQ 135 (874)
Q Consensus 58 ~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~ 135 (874)
+..+.+++.+. +|. ..++|++|+|++|.++.. .+..|.++++|++|++++|...+.+ |.+|.++++|+
T Consensus 7 ~~~dcs~~~L~~vP~--------lp~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--------VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEEESCCCSSCCCS--------SCTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred eEEEccCCCCCCCCC--------CCCCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 35666666665 442 468999999999999864 4578999999999999999666555 78999999999
Q ss_pred EEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCcccc--ccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcc
Q 042603 136 VLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLC--LANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILS 213 (874)
Q Consensus 136 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 213 (874)
+|+|++|.+.+..|..|.++++|++|++++|.+++..|.. |+++++|++|+|++|.+++..+...++++++|++|+++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 9999999999989999999999999999999999866654 99999999999999999875554478999999999999
Q ss_pred ccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCC--CCCCEEEcCCCCCc
Q 042603 214 NNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ--HDLNNADLSHLNLS 291 (874)
Q Consensus 214 ~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~n~l~ 291 (874)
+|.+.+. .+..+..+ ++|+.++++.|.+.
T Consensus 157 ~N~i~~~-------------------------------------------------~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 157 SNQIFLV-------------------------------------------------CEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp SSCCCCC-------------------------------------------------CSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCcCCee-------------------------------------------------CHHHcccccCCccceEECCCCccc
Confidence 9877532 22333333 68999999999999
Q ss_pred ccCCcchhcCCCC------CCEEEccCCcccccccCCccC---CCcccEEEccCCcCCcc--------CChhhhcC--CC
Q 042603 292 GEFPNWLPENNTD------LKTLLLANNSLFGSFRMPIHC---LQKLATLDVSNNFFLGH--------IPVEIGTY--LP 352 (874)
Q Consensus 292 ~~~p~~l~~~l~~------L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~--------i~~~~~~~--l~ 352 (874)
+..|..+ ..+++ |++|++++|.+.+..+..+.. ..+++.++++.+.+... .....+.. .+
T Consensus 188 ~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 188 SRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred cccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 8777654 34443 999999999988776655543 35788888875433211 11111111 13
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 432 (874)
+|++|++++|.+.+..|..|..+++|+.|++++|+++ +..+..+..+++|++|++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-------------------------~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-------------------------KIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-------------------------EECTTTTTTCSSCCEEEE
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-------------------------CCChHHhcCCCCCCEEEC
Confidence 5556666666555555555555555555555555555 333344444444444444
Q ss_pred cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512 (874)
Q Consensus 433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 512 (874)
++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++. ..+++|+.|++++|+++ .
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-c
Confidence 44444444444444444455555555544444444445555555555555554421 12556666777777665 3
Q ss_pred CCCCCCCCcccEEEeeCcccCccch-hhhhcCCCCcEEEccCccCCCCCch-hhcCCCCCcEEEccCccCcccCCccccC
Q 042603 513 LPSCLSLGSIEQVHLSKNKIEGQLE-SIIHYYPYLVTLDLSYNRLHGSIPN-WIDKLPQLSYILLANNYIEGEIPVQLCQ 590 (874)
Q Consensus 513 ~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 590 (874)
+|.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+.+..+..+
T Consensus 396 l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~-- 471 (844)
T 3j0a_A 396 LPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL-- 471 (844)
T ss_dssp CCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC--
T ss_pred cccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc--
Confidence 3332 3467778888888777543 3456889999999999999865443 45568899999999998874322111
Q ss_pred CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603 591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT 670 (874)
Q Consensus 591 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (874)
.|..+. .++
T Consensus 472 -----------------~~~~~~------------------------------------------------------~l~ 480 (844)
T 3j0a_A 472 -----------------CWDVFE------------------------------------------------------GLS 480 (844)
T ss_dssp -----------------CSSCSS------------------------------------------------------CBC
T ss_pred -----------------chhhhc------------------------------------------------------Ccc
Confidence 111111 134
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..+ .+|+.++++
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~ 555 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDIT 555 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence 778888999999988888899999999999999999988777776 899999999999999988765 478899999
Q ss_pred CCCCcccCCCccccCCCCCcccccCCCCCCCCCCCCCCCC
Q 042603 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDD 790 (874)
Q Consensus 751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~~~c~~ 790 (874)
+|++.+..+. ..|......+|..+||.+....|..
T Consensus 556 ~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 556 HNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp EECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred CCCccccccc-----HHHHHHHHhcCcccccccccCccCC
Confidence 9998875542 1111111234566677666667753
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-47 Score=441.56 Aligned_cols=272 Identities=20% Similarity=0.246 Sum_probs=172.3
Q ss_pred CCeEEccCC-cCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeC
Q 042603 451 LGGLYLSDN-HLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK 529 (874)
Q Consensus 451 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 529 (874)
++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|++. .+|. ..+++|+.|++++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~ 334 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEES
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcC
Confidence 344444444 444455555555566666666666555 345555555 6666666666655 3333 2355666666666
Q ss_pred cccCccchhhhhcCCCCcEEEccCccCCCCC--chhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCC
Q 042603 530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSI--PNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGH 607 (874)
Q Consensus 530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 607 (874)
|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+++.
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 665554443 45666666666666666443 55666666777777777766644333 66667777777777766543
Q ss_pred CCc-hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC
Q 042603 608 IPP-CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI 686 (874)
Q Consensus 608 ~p~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 686 (874)
.|. .+.. +++|+.|++++|.+++..
T Consensus 412 ~~~~~~~~------------------------------------------------------l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 412 SEFSVFLS------------------------------------------------------LRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp TTSCTTTT------------------------------------------------------CTTCCEEECTTSCCEECC
T ss_pred cchhhhhc------------------------------------------------------CCCCCEEeCcCCcccccc
Confidence 331 1111 346677777777777667
Q ss_pred CccccccccCCeEecCCcccc-cchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccC
Q 042603 687 PTQIGYLTRIRALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQF 765 (874)
Q Consensus 687 p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 765 (874)
|..+..+++|++|+|++|+++ +.+|..++.+++|++||+++|++++..|..+..+++|+.|++++|++++.+|..+..+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 777777777777777777776 4667777777777777777777777777777777777777777777777777666777
Q ss_pred CCCCcccccCCCCCCCCC
Q 042603 766 STFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 766 ~~l~~~~~~gNp~~C~~~ 783 (874)
++++.+++.+||+.|+||
T Consensus 518 ~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred cCCcEEEecCCcccCCCc
Confidence 777777777777777554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-47 Score=441.89 Aligned_cols=509 Identities=19% Similarity=0.200 Sum_probs=405.1
Q ss_pred cEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccc
Q 042603 111 QELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYN 190 (874)
Q Consensus 111 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 190 (874)
+.++.++.+++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 445566555553 333332 46777777777777666667777777777777777777666667777777777777777
Q ss_pred cccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCC
Q 042603 191 QLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTF 270 (874)
Q Consensus 191 ~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 270 (874)
++++ ++...+.++++|++|++++|.+..
T Consensus 87 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~--------------------------------------------------- 114 (570)
T 2z63_A 87 PIQS-LALGAFSGLSSLQKLVAVETNLAS--------------------------------------------------- 114 (570)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECTTSCCCC---------------------------------------------------
T ss_pred cCCc-cCHhhhcCcccccccccccccccc---------------------------------------------------
Confidence 7765 343366667777777766665431
Q ss_pred ChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccccc-ccCCccCCCcccEEEccCCcCCccCChhhhc
Q 042603 271 PKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS-FRMPIHCLQKLATLDVSNNFFLGHIPVEIGT 349 (874)
Q Consensus 271 ~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~ 349 (874)
++...++.+++|++|++++|.+.+. .|..+.++++|++|++++|.+.+..+..+ .
T Consensus 115 -----------------------l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 170 (570)
T 2z63_A 115 -----------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-R 170 (570)
T ss_dssp -----------------------STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-H
T ss_pred -----------------------CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-c
Confidence 2221135788999999999999874 58889999999999999999985444433 3
Q ss_pred CCCCC----cEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCccc------ccCCc
Q 042603 350 YLPGL----MHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ------GHIFS 419 (874)
Q Consensus 350 ~l~~L----~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~------~~~~~ 419 (874)
.+++| ++|++++|.+.+..|..|... +|+.|++++|............+++.++...+....+. .....
T Consensus 171 ~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 36677 899999999998888888766 89999999986554333344456788887766543322 22223
Q ss_pred cccCCC--CCCeEEccCC-cCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCC
Q 042603 420 EKFNLT--NLKRLQLDGN-KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQL 496 (874)
Q Consensus 420 ~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 496 (874)
.+..++ .++.+++.++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l 324 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKL 324 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBC
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccc
Confidence 333333 3566777777 677788899999999999999999998 578888888 9999999999998 4554 478
Q ss_pred CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccc--hhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603 497 DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQL--ESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574 (874)
Q Consensus 497 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 574 (874)
++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..+++|++|+
T Consensus 325 ~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~ 402 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred cccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence 8999999999999876665 56899999999999999875 77899999999999999999965554 89999999999
Q ss_pred ccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603 575 LANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653 (874)
Q Consensus 575 l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (874)
+++|.+.+..+ ..+..+++|+.|++++|.+++..|..+..
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------- 443 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------------- 443 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------------------
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---------------------------------------
Confidence 99999998766 57899999999999999998776655443
Q ss_pred EEEecCcccccccccccCcceEEcCCCccc-ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603 654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLT-GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 732 (874)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 732 (874)
+++|+.|++++|.++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|++++
T Consensus 444 ---------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 444 ---------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp ---------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 358999999999998 6799999999999999999999999999999999999999999999999
Q ss_pred cCChhhhcCCCCCeEEccCCCCcccCCC
Q 042603 733 KIPPQLIVLNTLAVFRVAYNNLSGKIPD 760 (874)
Q Consensus 733 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 760 (874)
.+|..+..+++|+.|++++|++++..|.
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9888999999999999999999998886
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.7e-47 Score=437.83 Aligned_cols=488 Identities=20% Similarity=0.193 Sum_probs=325.3
Q ss_pred EEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEccccc
Q 042603 112 ELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 191 (874)
Q Consensus 112 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 191 (874)
..+.+++.++.+ |..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 9 ~c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 345555555532 32222 456666666666665555556666666666666666665555556666666666666666
Q ss_pred ccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCC
Q 042603 192 LTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFP 271 (874)
Q Consensus 192 l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 271 (874)
+++ ++...++++++|++|++++|.+.
T Consensus 86 l~~-~~~~~~~~l~~L~~L~Ls~n~l~----------------------------------------------------- 111 (549)
T 2z81_A 86 LSS-LSSSWFGPLSSLKYLNLMGNPYQ----------------------------------------------------- 111 (549)
T ss_dssp CCS-CCHHHHTTCTTCCEEECTTCCCS-----------------------------------------------------
T ss_pred cCc-cCHHHhccCCCCcEEECCCCccc-----------------------------------------------------
Confidence 554 33324555555555555554432
Q ss_pred hhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCC
Q 042603 272 KFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYL 351 (874)
Q Consensus 272 ~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 351 (874)
+. ..+..+..+++|++|++++|.+.+.+|...+..+
T Consensus 112 --------------------~~------------------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 112 --------------------TL------------------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp --------------------SS------------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred --------------------cc------------------------chhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 10 0112233445555666666654445554444556
Q ss_pred CCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCC---ccccCCCCCC
Q 042603 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIF---SEKFNLTNLK 428 (874)
Q Consensus 352 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~ 428 (874)
++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+++|++|++++|.+++... .....+++|+
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 77777777777777777777888888888888888776 6676666667788888888888776421 1223456777
Q ss_pred eEEccCCcCcccCCc----cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603 429 RLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL 504 (874)
Q Consensus 429 ~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 504 (874)
.|++++|.+++..+. .+..+++|+.+++++|.+.+... ++. .....+..+++++.|++
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~-------------~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-----FNP-------------SESDVVSELGKVETVTI 288 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-----CCC-------------CTTTCCCCCTTCCEEEE
T ss_pred ceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-----ccc-------------cchhhhhhhcccccccc
Confidence 777777776543332 23445566666666665543210 000 01122345566777777
Q ss_pred cCCcCcccC-----CCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCch---hhcCCCCCcEEEc
Q 042603 505 SNNSIFGTL-----PSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN---WIDKLPQLSYILL 575 (874)
Q Consensus 505 ~~n~l~~~~-----~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~l 575 (874)
+++.+.... +... ..++|+.|++++|+++.++...+..+++|++|++++|++++..|. +++.+++|++|++
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 776654221 1101 146788999999988877666667889999999999998876643 3678899999999
Q ss_pred cCccCcccCC--ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603 576 ANNYIEGEIP--VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653 (874)
Q Consensus 576 ~~n~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (874)
++|++++..+ ..+..+++|+.||+++|+++ .+|..+..
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------------------- 408 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW--------------------------------------- 408 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC---------------------------------------
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc---------------------------------------
Confidence 9999886533 45788899999999999887 55554322
Q ss_pred EEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc
Q 042603 654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 733 (874)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 733 (874)
+++|+.|++++|+++ .+|..+. ++|++|+|++|++++.+ ..+++|++|||++|+|+ .
T Consensus 409 ---------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ 465 (549)
T 2z81_A 409 ---------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-T 465 (549)
T ss_dssp ---------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-S
T ss_pred ---------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-c
Confidence 348889999999988 4554443 68999999999998753 57889999999999998 5
Q ss_pred CChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 734 IPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 734 ~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
+|+ ...+++|++|++++|++++.+|..+..+++++.+++.+|||.|+||
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 665 4788999999999999999998888899999999999999999776
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.9e-46 Score=428.75 Aligned_cols=496 Identities=19% Similarity=0.185 Sum_probs=315.7
Q ss_pred CCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 042603 81 MASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRE 160 (874)
Q Consensus 81 l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 160 (874)
|+...+.+.+++.++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++
T Consensus 4 C~~~~~c~~~~~~l~~---ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS---IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSEEECTTSCCSS---CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCceEECCCCcccc---ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 3444456777777765 344443 78999999999998888888999999999999999999888888999999999
Q ss_pred EEccCCcCCCCccccccCCCCCCEEEcccccccc-cCCccccCCCCCCCEEEccccccccccCcccccCCCCCceecccc
Q 042603 161 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEI 239 (874)
Q Consensus 161 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~ 239 (874)
|++++|++++..|..|+++++|++|++++|.+++ .++. .+.++++|++|++++|.+.+.
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~------------------- 138 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSE------------------- 138 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCE-------------------
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccc-------------------
Confidence 9999999998877789999999999999999875 2333 678888888888887753221
Q ss_pred ccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccc
Q 042603 240 YAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSF 319 (874)
Q Consensus 240 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~ 319 (874)
+|...+..+++|++|++++|.+.+..
T Consensus 139 ------------------------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 139 ------------------------------------------------------IRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp ------------------------------------------------------ECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred ------------------------------------------------------cCHhhhhcccccCeeeccCCcccccC
Confidence 11111234455666666666666666
Q ss_pred cCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCccc--c-hhccCCCCcCEEEcccCcCCCCchhHH
Q 042603 320 RMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSI--P-SSFADMKMLKSLDISYNQLTGAIPERM 396 (874)
Q Consensus 320 ~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~~~l~~L~~L~l~~n~i~~~~~~~~ 396 (874)
+..+..+++|++|++++|.+. .+|...+..+++|++|++++|.+++.. | .....+++|+.|++++|.+++..+..+
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred hhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 666777778888888888765 666666666788888888888887542 1 223457788888888888876555444
Q ss_pred H---hcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC-----CCchh
Q 042603 397 A---MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-----KIPRW 468 (874)
Q Consensus 397 ~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~ 468 (874)
. ..+++|+.+++++|.+.+...... .....+..+.+++.|++.++.+.. .++..
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred HHHhhhhccccccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhcccchhh
Confidence 3 235667777777776654211000 001122334455555555554432 11222
Q ss_pred hhccccCCeeecCCCcccccCCccc-cCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCc
Q 042603 469 LGSLLALQDIIMPNNNLEGPIPNEF-CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLV 547 (874)
Q Consensus 469 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 547 (874)
+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++.+.+|.. +..+..+++|+
T Consensus 306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------~~~~~~l~~L~ 364 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN--------------------SACKGAWPSLQ 364 (549)
T ss_dssp HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH--------------------HTCTTSSTTCC
T ss_pred hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc--------------------hhhhhccccCc
Confidence 233344555555555544 233332 34555555555555554432110 11133444555
Q ss_pred EEEccCccCCCCCc--hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCC
Q 042603 548 TLDLSYNRLHGSIP--NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAV 625 (874)
Q Consensus 548 ~L~Ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~ 625 (874)
+|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------- 429 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------- 429 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS-------------
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh-------------
Confidence 55555555543221 23455555555555555555 34555555666666666666654 122110
Q ss_pred CCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcc
Q 042603 626 APTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 705 (874)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 705 (874)
.++|+.|++++|++++.+ +.+++|++|+|++|+
T Consensus 430 -------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 430 -------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNK 462 (549)
T ss_dssp -------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSC
T ss_pred -------------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCc
Confidence 135667777777777542 456778888888888
Q ss_pred cccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603 706 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 706 l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 759 (874)
++ .+|. ...+++|++|||++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 463 l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 463 LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 87 4554 4567788888888888887777778888888888888888877666
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-45 Score=432.78 Aligned_cols=447 Identities=22% Similarity=0.272 Sum_probs=252.0
Q ss_pred ceeeEEEccCCCCCCCCChhccCCCCCCEEEc-CCCCCcccCCcchhc--------------------------------
Q 042603 254 FQLTSISLSGYGDGGTFPKFLYHQHDLNNADL-SHLNLSGEFPNWLPE-------------------------------- 300 (874)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l-~~n~l~~~~p~~l~~-------------------------------- 300 (874)
.+++.|+|+++++.|.+|..+++++.|+.|++ ++|.+.|..|.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 36888889888888888888888999999999 777776653322100
Q ss_pred ------------------CCCCCCEEEcc--CCcccccccCCccCCCcccEEEccCCcCCc-----------------cC
Q 042603 301 ------------------NNTDLKTLLLA--NNSLFGSFRMPIHCLQKLATLDVSNNFFLG-----------------HI 343 (874)
Q Consensus 301 ------------------~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~i 343 (874)
....++.+.+. .|.+.+ +|..+..+++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00112222222 244444 44455555556666666655554 14
Q ss_pred Chhhh-cCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCc-CCC-CchhHHHhcCCCCCEEEcccCcccccCCcc
Q 042603 344 PVEIG-TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ-LTG-AIPERMAMGCFSLEILALSNNTLQGHIFSE 420 (874)
Q Consensus 344 ~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 420 (874)
|..+. ..+++|++|++++|.+.+.+|..|.++++|++|++++|+ +++ .+|..+.. ++ ..
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~-----------------~~ 543 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LA-----------------DD 543 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HH-----------------HC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hh-----------------hc
Confidence 54442 224555555555555555555555555555555555555 554 44443321 11 01
Q ss_pred ccCCCCCCeEEccCCcCcccCCc--cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCC
Q 042603 421 KFNLTNLKRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC 498 (874)
Q Consensus 421 ~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 498 (874)
+..+++|+.|++++|+++ .+|. .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++
T Consensus 544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence 112224444444444444 3444 4444444444444444444 344 4444444555555554444 34444444444
Q ss_pred -CCEEECcCCcCcccCCCCCC-C--CcccEEEeeCcccCccchhhh---h--cCCCCcEEEccCccCCCCCchh-hcCCC
Q 042603 499 -LKVLDLSNNSIFGTLPSCLS-L--GSIEQVHLSKNKIEGQLESII---H--YYPYLVTLDLSYNRLHGSIPNW-IDKLP 568 (874)
Q Consensus 499 -L~~L~L~~n~l~~~~~~~~~-~--~~L~~L~l~~n~i~~~~~~~~---~--~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 568 (874)
|+.|++++|++. .+|..+. . ++|+.|++++|++++.+|... . .+++|+.|++++|+++. +|.. +..++
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~ 697 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGS 697 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTC
T ss_pred cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCC
Confidence 555555555544 3333332 1 225555555555544333211 1 22355555555555552 3332 33555
Q ss_pred CCcEEEccCccCcccCCccccC--------CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccC
Q 042603 569 QLSYILLANNYIEGEIPVQLCQ--------LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYF 640 (874)
Q Consensus 569 ~L~~L~l~~n~~~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (874)
+|+.|++++|++. .+|..+.. +++|+.|+|++|+++ .+|..+...
T Consensus 698 ~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~------------------------- 750 (876)
T 4ecn_A 698 PISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT------------------------- 750 (876)
T ss_dssp CCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT-------------------------
T ss_pred CCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc-------------------------
Confidence 5555555555555 33332222 226777777777776 555544300
Q ss_pred CCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCC------cccccchhhhc
Q 042603 641 PPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH------NNLTGTIPTTF 714 (874)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~ 714 (874)
.+++|+.|+|++|++++ +|..++.+++|+.|+|++ |++.+.+|..|
T Consensus 751 ---------------------------~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 751 ---------------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp ---------------------------TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred ---------------------------cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 03467777777777775 677777777777777765 88888899999
Q ss_pred cCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCC--CCC
Q 042603 715 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLC--GLP 783 (874)
Q Consensus 715 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C--~~~ 783 (874)
.++++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+..........+.+|++.| |||
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred hcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 9999999999999999 67887755 689999999999887766655554455566677777665 554
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-44 Score=426.75 Aligned_cols=519 Identities=20% Similarity=0.203 Sum_probs=349.1
Q ss_pred CCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcc
Q 042603 109 HLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVS 188 (874)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 188 (874)
++++|+|++|+|+++.+.+|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56666666666665555566666666666666666665555556666666666666666665555556666666666666
Q ss_pred cccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCC
Q 042603 189 YNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGG 268 (874)
Q Consensus 189 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 268 (874)
+|++++ ++...|+++++|++|++++|.+..
T Consensus 133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~------------------------------------------------- 162 (635)
T 4g8a_A 133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQS------------------------------------------------- 162 (635)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCCC-------------------------------------------------
T ss_pred CCcCCC-CChhhhhcCcccCeeccccCcccc-------------------------------------------------
Confidence 666654 443345555555555555554321
Q ss_pred CCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhh
Q 042603 269 TFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIG 348 (874)
Q Consensus 269 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~ 348 (874)
...|.. +..+++|++|++++|++.+..+..+..+.+++
T Consensus 163 -----------------------~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~------------------ 200 (635)
T 4g8a_A 163 -----------------------FKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP------------------ 200 (635)
T ss_dssp -----------------------CCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT------------------
T ss_pred -----------------------CCCchh-hccchhhhhhcccCccccccccccccchhhhh------------------
Confidence 012222 24566677777777776665554443332221
Q ss_pred cCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCc------ccccCCcccc
Q 042603 349 TYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNT------LQGHIFSEKF 422 (874)
Q Consensus 349 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~ 422 (874)
.....++++.|.+....+..+ ....++.+++++|.....++...+.++..++...+..+. +.......+.
T Consensus 201 ---~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 201 ---LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp ---TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred ---hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 122344445554443333222 223344455555544433333334444555444443222 1122222333
Q ss_pred CCCCCCeEEccCCcCc---ccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCC
Q 042603 423 NLTNLKRLQLDGNKFI---GEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCL 499 (874)
Q Consensus 423 ~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 499 (874)
....++...+..+... ...+..+..+.+++.+.+.++.+... ..+.....++.|++.+|.+.+..+. .+..|
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L 351 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSL 351 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTC
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhh
Confidence 3444444444333221 12334456667788888888877633 2355667888888888888755443 45678
Q ss_pred CEEECcCCcCcccCCCCCCCCcccEEEeeCcccCc--cchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEG--QLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577 (874)
Q Consensus 500 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 577 (874)
+.+++.+|.+.. .+....+++|+.+++++|.+.. ..+..+..+.+|+.++++.|.+.. .+..+..+++|+.+++.+
T Consensus 352 ~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 352 KRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp CEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred hhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence 888888888763 4445568889999999998764 345667788999999999998874 455678899999999998
Q ss_pred ccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEE
Q 042603 578 NYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFT 656 (874)
Q Consensus 578 n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (874)
+......+ ..+..+++++.++++.|.+.+..|..+..
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~------------------------------------------ 467 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------------------ 467 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc------------------------------------------
Confidence 88766554 46788999999999999998655544332
Q ss_pred ecCcccccccccccCcceEEcCCCcc-cccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603 657 TKNMSYYYRGRILTSMSGIDLSCNKL-TGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735 (874)
Q Consensus 657 ~~~~~~~~~~~~~~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 735 (874)
++.++.|++++|.+ .+.+|..|..+++|++|||++|++++.+|..|+++++|++|+|++|+|++..|
T Consensus 468 ------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 468 ------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp ------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 34889999999985 45678999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCeEEccCCCCcccCCCccccC-CCCCcccccCCCCCCCCCC
Q 042603 736 PQLIVLNTLAVFRVAYNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 736 ~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~-~~l~~~~~~gNp~~C~~~l 784 (874)
..+..+++|++|++++|+|++.+|..+..+ .+++.++++||||.|+|.+
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999999999999999999999988887 5799999999999997654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-45 Score=427.97 Aligned_cols=436 Identities=19% Similarity=0.265 Sum_probs=274.6
Q ss_pred eeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCC------cc------cCCcchhcCCCCCCEEEccCCcccccccCC
Q 042603 255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNL------SG------EFPNWLPENNTDLKTLLLANNSLFGSFRMP 322 (874)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l------~~------~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~ 322 (874)
+++.|+++++.+.|.+|..++++++|+.|++++|.+ .+ .+|... +..|+ ++++.+.+.+..+..
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 788999999999999999999999999999999965 22 122211 11222 233333222222211
Q ss_pred ccC-------------------CCcccEEEc--cCCcCCccCChhhhcCCCCCcEEEccCCcCCcc--------------
Q 042603 323 IHC-------------------LQKLATLDV--SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS-------------- 367 (874)
Q Consensus 323 ~~~-------------------l~~L~~L~L--s~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~-------------- 367 (874)
+.. ...++.+.+ ..|.+++ +|..+.. +++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence 110 001111111 1344544 5554433 45555555555555543
Q ss_pred ---cchhcc--CCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCc-ccc-cCCccccCC------CCCCeEEccC
Q 042603 368 ---IPSSFA--DMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNT-LQG-HIFSEKFNL------TNLKRLQLDG 434 (874)
Q Consensus 368 ---~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~ 434 (874)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|. +++ .+|..+..+ ++|++|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 555555 555555555555555555554443 35555555555555 555 445444443 5666666666
Q ss_pred CcCcccCCc--cccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCC-CCEEECcCCcCcc
Q 042603 435 NKFIGEIPE--SLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDC-LKVLDLSNNSIFG 511 (874)
Q Consensus 435 n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~ 511 (874)
|+++ .+|. .+..+++|++|++++|.++|.+| .++.+++|+.|++++|++. .+|..+..+++ |++|++++|+++
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 6666 5555 56666666666666666665566 5666666666666666666 45555666666 666666666666
Q ss_pred cCCCCCC---CCcccEEEeeCcccCccchhhhh-------cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603 512 TLPSCLS---LGSIEQVHLSKNKIEGQLESIIH-------YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581 (874)
Q Consensus 512 ~~~~~~~---~~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 581 (874)
.+|..+. +++|+.|++++|++++..|..+. .+++|++|++++|+++...+..+..+++|++|++++|+++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 4554433 23566677777766666666555 5667777777777777444444555777777777777777
Q ss_pred ccCCcc-ccCC-------CCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603 582 GEIPVQ-LCQL-------KEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653 (874)
Q Consensus 582 ~~~~~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (874)
.+|.. +... ++|+.|++++|+++ .+|..+...
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-------------------------------------- 510 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT-------------------------------------- 510 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT--------------------------------------
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc--------------------------------------
Confidence 34433 3222 27888888888887 666554310
Q ss_pred EEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEec------CCcccccchhhhccCCCCCCEEECCC
Q 042603 654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL------SHNNLTGTIPTTFSNLKQIESLDLSY 727 (874)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~LdLs~ 727 (874)
.+++|+.|+|++|++++ +|..++.+++|++|+| ++|++.+.+|..++++++|++|||++
T Consensus 511 --------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 511 --------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp --------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred --------------cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 03478888888888886 7888888888888888 56778888999999999999999999
Q ss_pred CcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603 728 NLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 728 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 759 (874)
|++ +.+|..+. ++|+.|++++|++....+
T Consensus 576 N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 576 NDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp SCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred CcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence 999 67787755 789999999998765443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-46 Score=435.69 Aligned_cols=442 Identities=19% Similarity=0.245 Sum_probs=367.7
Q ss_pred CCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccc------c------cccCCccCCCcccEEEccCCcCCccCCh
Q 042603 278 HDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLF------G------SFRMPIHCLQKLATLDVSNNFFLGHIPV 345 (874)
Q Consensus 278 ~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~Ls~n~l~~~i~~ 345 (874)
..++.|+++++.+.|.+|..+ +.++.|++|++++|.+. + .+|. ..+..|+ +++++|.+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~--~~~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSD--EQKQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH--HHHHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchH--HHHHHHH-hhHHHhhhccCchh
Confidence 468889999999999999876 68999999999999762 1 1111 1144566 77787777776665
Q ss_pred hhhcCCC------------------CCcEEEcc--CCcCCcccchhccCCCCcCEEEcccCcCCCC--------------
Q 042603 346 EIGTYLP------------------GLMHLNLS--RNAFNGSIPSSFADMKMLKSLDISYNQLTGA-------------- 391 (874)
Q Consensus 346 ~~~~~l~------------------~L~~L~l~--~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-------------- 391 (874)
.+...+. .++.+.+. +|.+++ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 5442111 22222222 578887 899999999999999999999975
Q ss_pred ---chhHHH-hcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCc-Ccc-cCCcccccc------CCCCeEEccCC
Q 042603 392 ---IPERMA-MGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNK-FIG-EIPESLSKC------YLLGGLYLSDN 459 (874)
Q Consensus 392 ---~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~------~~L~~L~l~~n 459 (874)
+|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 787764 258999999999999999999999999999999999998 888 788888776 99999999999
Q ss_pred cCCCCCch--hhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC-CCCc-ccEEEeeCcccCcc
Q 042603 460 HLSGKIPR--WLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGS-IEQVHLSKNKIEGQ 535 (874)
Q Consensus 460 ~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~n~i~~~ 535 (874)
.++ .+|. .++.+++|+.|++++|.+.|.+| .+..+++|++|++++|++. .+|..+ .+++ |++|++++|+++.
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~- 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY- 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-
Confidence 999 7888 89999999999999999998889 8999999999999999998 566544 4888 9999999999994
Q ss_pred chhhhhcCC--CCcEEEccCccCCCCCchhhc-------CCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCC
Q 042603 536 LESIIHYYP--YLVTLDLSYNRLHGSIPNWID-------KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606 (874)
Q Consensus 536 ~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 606 (874)
.|..+..++ +|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence 455666544 899999999999999998888 7889999999999999555555667999999999999998
Q ss_pred CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC
Q 042603 607 HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI 686 (874)
Q Consensus 607 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 686 (874)
.+|......... ....+++|+.|+|++|+++ .+
T Consensus 471 ~i~~~~~~~~~~----------------------------------------------~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 471 EIPKNSLKDENE----------------------------------------------NFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp BCCSSSSEETTE----------------------------------------------ECTTGGGCCEEECCSSCCC-BC
T ss_pred CcCHHHhccccc----------------------------------------------cccccCCccEEECcCCcCC-cc
Confidence 677543321100 0011348999999999999 78
Q ss_pred Ccccc--ccccCCeEecCCcccccchhhhccCCCCCCEEEC------CCCcCcccCChhhhcCCCCCeEEccCCCCcccC
Q 042603 687 PTQIG--YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDL------SYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKI 758 (874)
Q Consensus 687 p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 758 (874)
|..+. .+++|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..+..+++|+.|++++|++ +.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 88887 99999999999999998 8999999999999999 56889999999999999999999999999 677
Q ss_pred CCccccCCCCCcccccCCCCCC
Q 042603 759 PDRVAQFSTFEEDSYEGNPFLC 780 (874)
Q Consensus 759 p~~~~~~~~l~~~~~~gNp~~C 780 (874)
|..+. ++++.+++.+||+.|
T Consensus 582 p~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 582 NEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSCCC--TTCCEEECCSCTTCE
T ss_pred CHhHh--CcCCEEECcCCCCcc
Confidence 87544 789999999999988
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-45 Score=416.39 Aligned_cols=455 Identities=20% Similarity=0.182 Sum_probs=379.8
Q ss_pred eEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccC
Q 042603 257 TSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSN 336 (874)
Q Consensus 257 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 336 (874)
+.++++++.++ .+|..+. +++++|++++|.+.+..|.. +..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46889999888 4776665 89999999999998654444 47899999999999999999899999999999999999
Q ss_pred CcCCccCChhhhcCCCCCcEEEccCCcCCc-ccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCC--CEEEcccCcc
Q 042603 337 NFFLGHIPVEIGTYLPGLMHLNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL--EILALSNNTL 413 (874)
Q Consensus 337 n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L--~~L~L~~n~l 413 (874)
|.++ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 9998 78876 48999999999999987 478999999999999999999985 223457788 9999999999
Q ss_pred --cccCCccccCCC-CCCeEEccCCcCcccCC-ccccccCCCCeEEccCCc-------CCCCCchhhhccccCCeeecCC
Q 042603 414 --QGHIFSEKFNLT-NLKRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNH-------LSGKIPRWLGSLLALQDIIMPN 482 (874)
Q Consensus 414 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~ 482 (874)
.+..+..+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|. +.+.+| .++.+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 777777776554 23467888888876554 457789999999999997 555554 688899999999999
Q ss_pred CcccccCCcccc---CCCCCCEEECcCCcCcccCCCCC------CCCcccEEEeeCcccCccchhhhhcC---CCCcEEE
Q 042603 483 NNLEGPIPNEFC---QLDCLKVLDLSNNSIFGTLPSCL------SLGSIEQVHLSKNKIEGQLESIIHYY---PYLVTLD 550 (874)
Q Consensus 483 n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~ 550 (874)
|.+.+..+..+. ..++|++|++++|++.+.+|..+ .++.|+.+++++|.+ ..+...+..+ ++|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 988754322211 24689999999999998888765 489999999999999 4443444444 6899999
Q ss_pred ccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCC--CCCchhhccccccccccCCCCC
Q 042603 551 LSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG--HIPPCLVNTALSEGYYDAVAPT 628 (874)
Q Consensus 551 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~~~~~ 628 (874)
+++|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++ .+|..+..
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-------------- 372 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-------------- 372 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence 9999987533 12688999999999999999899999999999999999999985 44444433
Q ss_pred ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCc-cccccccCCeEecCCcccc
Q 042603 629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLT 707 (874)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~ 707 (874)
+++|+.|++++|.+++.+|. .+..+++|+.|+|++|+++
T Consensus 373 ----------------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 373 ----------------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred ----------------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 35899999999999985665 4889999999999999999
Q ss_pred cchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 708 GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 708 ~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
+..|..+. ++|++|||++|+++ .+|..+..+++|+.|++++|++++.++..+..+++++.+++.+||+.|+|++
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 98887765 79999999999999 7888888999999999999999965555578899999999999999997654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-44 Score=408.80 Aligned_cols=458 Identities=16% Similarity=0.160 Sum_probs=273.6
Q ss_pred EEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccC
Q 042603 86 ILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDN 165 (874)
Q Consensus 86 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 165 (874)
+|++++|+++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 4 ~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 4 LVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp EEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred eEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 44555555543 222222 4555555555555554445555555555555555555544455555555555555555
Q ss_pred CcCCCCccccccCCCCCCEEEcccccccc-cCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccc
Q 042603 166 NDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETE 244 (874)
Q Consensus 166 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~ 244 (874)
|+++. +|.. .+++|++|++++|.+++ .+|. .++++++|++|++++|.+.+ ..+..+++|
T Consensus 79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L------------ 138 (520)
T 2z7x_B 79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHL------------ 138 (520)
T ss_dssp SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTS------------
T ss_pred Cceee-cCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccc------------
Confidence 55542 3322 45555555555555544 2233 45555555555555554432 011111100
Q ss_pred cccCCCCCCceeeEEEccCCCC--CCCCChhccCCC-CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCc-------
Q 042603 245 SHYNSLTPKFQLTSISLSGYGD--GGTFPKFLYHQH-DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS------- 314 (874)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~------- 314 (874)
+++.|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 139 ----------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 139 ----------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp ----------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred ----------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 234555555554 444455544433 233456777777777777666778888888888876
Q ss_pred ccccccCCccCCCcccEEEccCCcCCccCChhhhc--CCCCCcEEEccCCcCCcccchhc-----cCCCCcCEEEcccCc
Q 042603 315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGT--YLPGLMHLNLSRNAFNGSIPSSF-----ADMKMLKSLDISYNQ 387 (874)
Q Consensus 315 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~ 387 (874)
+.+.++ .+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.
T Consensus 209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 555555 6778888999999888776543332221 13589999999999888888887 888889999999988
Q ss_pred CCCCch-hHHHhc--CCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC-
Q 042603 388 LTGAIP-ERMAMG--CFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG- 463 (874)
Q Consensus 388 i~~~~~-~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~- 463 (874)
+ .+| ..+... ..+|+.|++++|.+..... +..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred e--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 8 555 333321 2568888888887764321 1456667777777777766666666666666666666666654
Q ss_pred -CCchhhhccccCCeeecCCCcccccCCc-cccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhh
Q 042603 464 -KIPRWLGSLLALQDIIMPNNNLEGPIPN-EFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541 (874)
Q Consensus 464 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 541 (874)
.+|..++.+++|++|++++|.+.+.+|. .+..++ +|++|++++|++++..+..+.
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~-----------------------~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK-----------------------SLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT-----------------------TCCEEECCSSCCCGGGGGSCC
T ss_pred ccchHHHhhCCCCCEEECCCCcCCcccccchhccCc-----------------------cCCEEECcCCCCCcchhhhhc
Confidence 3334455555555555555555542332 244444 455555555555444333332
Q ss_pred cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609 (874)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (874)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 57788888888887 667766788888888888888884333347888888888888888887654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.2e-42 Score=403.85 Aligned_cols=534 Identities=19% Similarity=0.146 Sum_probs=317.3
Q ss_pred cEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCE
Q 042603 58 EHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQV 136 (874)
Q Consensus 58 ~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 136 (874)
++.+.++..+. +|.. -.+.+++|+|++|+++.. .+.+|.++++|++|+|++|+|+++.+.+|.++++|++
T Consensus 34 ~~~~c~~~~l~~vP~~-------lp~~~~~LdLs~N~i~~l--~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~ 104 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDN-------LPFSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 104 (635)
T ss_dssp TEEECTTSCCSSCCSS-------SCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CEEECCCCCcCccCCC-------CCcCCCEEEeeCCCCCCC--CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence 34566655554 5544 135799999999999863 3578999999999999999999888899999999999
Q ss_pred EEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccc
Q 042603 137 LNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNH 216 (874)
Q Consensus 137 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~ 216 (874)
|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++......+..+++|++|++++|+
T Consensus 105 L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999999987778899999999999999999988888899999999999999999763223378889999999999998
Q ss_pred cccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCC-CCCCEEEcCCCCCcccCC
Q 042603 217 FQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQ-HDLNNADLSHLNLSGEFP 295 (874)
Q Consensus 217 ~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p 295 (874)
+++..+ ..+. .+... .....++++.|.+.. ++
T Consensus 185 l~~~~~-~~l~---------------------------------------------~L~~l~~~~~~~~ls~n~l~~-i~ 217 (635)
T 4g8a_A 185 IQSIYC-TDLR---------------------------------------------VLHQMPLLNLSLDLSLNPMNF-IQ 217 (635)
T ss_dssp CCEECG-GGGH---------------------------------------------HHHTCTTCCCEEECTTCCCCE-EC
T ss_pred cccccc-cccc---------------------------------------------chhhhhhhhhhhhcccCcccc-cC
Confidence 764211 1110 01111 123345555555542 22
Q ss_pred cchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCc------CCcccc
Q 042603 296 NWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNA------FNGSIP 369 (874)
Q Consensus 296 ~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~------i~~~~~ 369 (874)
...+ ... .++.+++++|.....++...+..++.++...+..+. +.....
T Consensus 218 ~~~~-~~~------------------------~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 218 PGAF-KEI------------------------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp TTTT-TTC------------------------EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred cccc-cch------------------------hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 2211 112 333444444433322333333334444443332221 111122
Q ss_pred hhccCCCCcCEEEcccCcCCCCchh--HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccc
Q 042603 370 SSFADMKMLKSLDISYNQLTGAIPE--RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSK 447 (874)
Q Consensus 370 ~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 447 (874)
..+..+..+...++..+........ ..+.....++.+.+.++.+.... .+.....++.|++.+|.+.+..+. .
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~ 347 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---K 347 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---B
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---c
Confidence 2233333333333333222111000 01112334444444444443221 122334444444444444322221 2
Q ss_pred cCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc--ccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEE
Q 042603 448 CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE--GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQV 525 (874)
Q Consensus 448 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 525 (874)
+..|+.+++.+|...... ....+++|+.+++++|.+. +..+..+..+.+|+.++++.|......+.
T Consensus 348 l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~---------- 415 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN---------- 415 (635)
T ss_dssp CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC----------
T ss_pred chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc----------
Confidence 333444444444443211 1223444444444444442 12233334444455555555444433333
Q ss_pred EeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc-hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcC
Q 042603 526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP-NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604 (874)
Q Consensus 526 ~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l 604 (874)
+..+++|+.+++++|......+ ..+..+++++.++++.|.+.+..+..+..++.++.|++++|++
T Consensus 416 --------------~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~ 481 (635)
T 4g8a_A 416 --------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481 (635)
T ss_dssp --------------CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred --------------ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc
Confidence 3334445555554444433322 2344555555666666665555555556666666666666654
Q ss_pred CCC-CCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccc
Q 042603 605 SGH-IPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLT 683 (874)
Q Consensus 605 ~~~-~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 683 (874)
... .|..+.. +++|+.|||++|+++
T Consensus 482 ~~~~~~~~~~~------------------------------------------------------l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 482 QENFLPDIFTE------------------------------------------------------LRNLTFLDLSQCQLE 507 (635)
T ss_dssp GGGEECSCCTT------------------------------------------------------CTTCCEEECTTSCCC
T ss_pred ccccCchhhhh------------------------------------------------------ccccCEEECCCCccC
Confidence 321 2222211 346777777777777
Q ss_pred ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC-CCCCeEEccCCCCccc
Q 042603 684 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLAVFRVAYNNLSGK 757 (874)
Q Consensus 684 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~~~ 757 (874)
+.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++.+|..+..+ ++|+.|++++|++..-
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 7778888888888888888888888888888888888888888888888888888887 6788888888888754
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-43 Score=416.86 Aligned_cols=376 Identities=19% Similarity=0.231 Sum_probs=264.8
Q ss_pred CCCcccCCcchhcCCCCCCEEEccCCcccc-----------------cccCCcc--CCCcccEEEccCCcCCccCChhhh
Q 042603 288 LNLSGEFPNWLPENNTDLKTLLLANNSLFG-----------------SFRMPIH--CLQKLATLDVSNNFFLGHIPVEIG 348 (874)
Q Consensus 288 n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~i~~~~~ 348 (874)
|.+.+ +|..+ ..+++|++|++++|.+.+ .+|..+. .+++|++|++++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 44444 45443 455555555555555555 4777766 899999999999998888887665
Q ss_pred cCCCCCcEEEccCCc-CCc-ccchhccCCC-------CcCEEEcccCcCCCCchh-HHHhcCCCCCEEEcccCcccccCC
Q 042603 349 TYLPGLMHLNLSRNA-FNG-SIPSSFADMK-------MLKSLDISYNQLTGAIPE-RMAMGCFSLEILALSNNTLQGHIF 418 (874)
Q Consensus 349 ~~l~~L~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~ 418 (874)
. +++|++|++++|. +++ .+|..+..++ +|++|++++|+++ .+|. ..+..+++|+.|++++|.++
T Consensus 513 ~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---- 586 (876)
T 4ecn_A 513 D-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---- 586 (876)
T ss_dssp G-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC----
T ss_pred C-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc----
Confidence 5 7899999999998 887 7787666544 6666666666666 5554 12223555555555555554
Q ss_pred ccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc-CCeeecCCCcccccCCccccCCC
Q 042603 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA-LQDIIMPNNNLEGPIPNEFCQLD 497 (874)
Q Consensus 419 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~ 497 (874)
.+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+...+
T Consensus 587 ---------------------~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 587 ---------------------HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp ---------------------BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred ---------------------cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 333 3444444444444444444 44444555555 555555555555 3444444443
Q ss_pred C--CCEEECcCCcCcccCCCCC------CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC---
Q 042603 498 C--LKVLDLSNNSIFGTLPSCL------SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK--- 566 (874)
Q Consensus 498 ~--L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--- 566 (874)
. |+.|++++|++.+.+|... ...+|+.|++++|+++.+++..+..+++|+.|+|++|+++ .+|..+..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~ 721 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD 721 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc
Confidence 3 6667777777666555433 3457888888888888777777778888999999998888 55554332
Q ss_pred -----CCCCcEEEccCccCcccCCcccc--CCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCccc
Q 042603 567 -----LPQLSYILLANNYIEGEIPVQLC--QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSY 639 (874)
Q Consensus 567 -----l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (874)
+++|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L------------------------ 775 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS------------------------ 775 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC------------------------
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC------------------------
Confidence 238899999999888 6777776 88899999999999886 67666543
Q ss_pred CCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC------CcccccCCccccccccCCeEecCCcccccchhhh
Q 042603 640 FPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC------NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713 (874)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 713 (874)
++|+.|+|++ |.+.+.+|..++.+++|+.|+|++|++ +.+|..
T Consensus 776 ------------------------------~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 776 ------------------------------SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp ------------------------------TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred ------------------------------CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 4788888866 889999999999999999999999999 588887
Q ss_pred ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc
Q 042603 714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755 (874)
Q Consensus 714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 755 (874)
+. ++|+.|||++|++....+..+.....+..+.+.+|.+.
T Consensus 825 l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 76 69999999999999888887777777788888888765
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-41 Score=389.67 Aligned_cols=456 Identities=19% Similarity=0.149 Sum_probs=362.9
Q ss_pred eeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEc
Q 042603 255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV 334 (874)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 334 (874)
..+.++++++++++ +|..+. +++++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG-TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh-hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 44789999998886 676554 78999999999998544444 478999999999999999999999999999999999
Q ss_pred cCCcCCccCChhhhcCCCCCcEEEccCCcCCcc-cchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCC--CEEEcccC
Q 042603 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGS-IPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSL--EILALSNN 411 (874)
Q Consensus 335 s~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L--~~L~L~~n 411 (874)
++|.++ .+|.. .+++|++|++++|.+++. .|..|.++++|++|++++|++++.. +..+++| ++|++++|
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEES
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeecc
Confidence 999998 78876 488999999999999873 4689999999999999999998421 2335566 99999999
Q ss_pred cc--cccCCccccCCC--CCCeEEccCCcCcccCCc-cccccCCCCeEEccCCcCC----CCCchhhhccccCCeeecCC
Q 042603 412 TL--QGHIFSEKFNLT--NLKRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLS----GKIPRWLGSLLALQDIIMPN 482 (874)
Q Consensus 412 ~l--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~ 482 (874)
.+ ++..+..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++++.+++.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 99 887777776554 33 568888888765553 4567889999999998521 01224567788888888888
Q ss_pred CcccccC----CccccCCCCCCEEECcCCcCcccCCCCC------CCCcccEEEeeCcccCccchhhhhc---CCCCcEE
Q 042603 483 NNLEGPI----PNEFCQLDCLKVLDLSNNSIFGTLPSCL------SLGSIEQVHLSKNKIEGQLESIIHY---YPYLVTL 549 (874)
Q Consensus 483 n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~---l~~L~~L 549 (874)
+.+.+.. +..+ ..++|++|++++|++++.+|..+ .++.|+.++++.+.+ ..+...+.. ..+|++|
T Consensus 259 ~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 259 IETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEE
T ss_pred CcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEE
Confidence 7765421 1222 23589999999999998888754 256666666666666 333233322 3679999
Q ss_pred EccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCC--CCchhhccccccccccCCCC
Q 042603 550 DLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGH--IPPCLVNTALSEGYYDAVAP 627 (874)
Q Consensus 550 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~~~~ 627 (874)
++++|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++. +|..+..
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~------------- 401 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN------------- 401 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-------------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-------------
Confidence 99999987432 126789999999999999998999999999999999999999842 1222222
Q ss_pred CccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCc-cccccccCCeEecCCccc
Q 042603 628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNL 706 (874)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l 706 (874)
+++|+.|++++|++++.+|. .+..+++|++|+|++|++
T Consensus 402 -----------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 402 -----------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp -----------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred -----------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 45899999999999985654 588999999999999999
Q ss_pred ccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 707 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 707 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
++.+|..+. ++|++|||++|+++ .+|+.+..+++|+.|++++|++++.++..+..++.++.+++.+|||.|+|++
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 988877665 79999999999999 6787778999999999999999965555478899999999999999998764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9e-41 Score=385.81 Aligned_cols=442 Identities=19% Similarity=0.163 Sum_probs=238.0
Q ss_pred CCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEE
Q 042603 82 ASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLREL 161 (874)
Q Consensus 82 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 161 (874)
++|++|++++|.++.. .+..|+++++|++|++++|++++..|.+|.++++|++|++++|.++ .+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISEL--RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCC--CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred CCcCEEECCCCCcccc--ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence 4455555555554432 2234445555555555555555444444555555555555555544 23332 44555555
Q ss_pred EccCCcCCCC-ccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccc
Q 042603 162 YIDNNDLRGS-LPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIY 240 (874)
Q Consensus 162 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~ 240 (874)
++++|++++. .|..|+++++|++|++++|++++ . .+..+++|
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L--------------------------------- 169 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHL--------------------------------- 169 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTS---------------------------------
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhc---------------------------------
Confidence 5555554432 23444555555555555554443 1 12222222
Q ss_pred cccccccCCCCCCceeeEEEccCCCC--CCCCChhccCCC-CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccc-
Q 042603 241 AETESHYNSLTPKFQLTSISLSGYGD--GGTFPKFLYHQH-DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLF- 316 (874)
Q Consensus 241 ~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~- 316 (874)
+|+.|++++|.+ ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|...
T Consensus 170 --------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (562)
T 3a79_B 170 --------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235 (562)
T ss_dssp --------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred --------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccccc
Confidence 224444444444 334444443332 11134566666666666555556677777777776411
Q ss_pred ---ccccCCccCCCcccEEEccCCcCCccCChhhh--cCCCCCcEEEccCCcCCcccchhc-----cCCCCcCEEEcccC
Q 042603 317 ---GSFRMPIHCLQKLATLDVSNNFFLGHIPVEIG--TYLPGLMHLNLSRNAFNGSIPSSF-----ADMKMLKSLDISYN 386 (874)
Q Consensus 317 ---~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n 386 (874)
......+..+++|+.++++++.+.+....... ...++|++|++++|.+++.+|..+ ..++.|+.++++.+
T Consensus 236 ~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~ 315 (562)
T 3a79_B 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315 (562)
T ss_dssp HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence 11112355667777777777665432111111 113478888888888887777766 66666666666666
Q ss_pred cCCCCchhH-HHh--cCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCC
Q 042603 387 QLTGAIPER-MAM--GCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 463 (874)
Q Consensus 387 ~i~~~~~~~-~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 463 (874)
.+ .+|.. ++. ...+|+.|++++|.+..... ...+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 66 44432 221 12457777777776643221 1355666666666666665555555556666666666665553
Q ss_pred C--CchhhhccccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhh
Q 042603 464 K--IPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESII 540 (874)
Q Consensus 464 ~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 540 (874)
. .|..+..+++|+.|++++|.+.+.+| ..+.. +++|++|++++|++++..+..+
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-----------------------AESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-----------------------CTTCCEEECCSSCCCGGGGSSC
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-----------------------cccCCEEECCCCCCCcchhhhh
Confidence 1 12334444444444444444444222 22333 4555555555555554433322
Q ss_pred hcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603 541 HYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609 (874)
Q Consensus 541 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (874)
. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 449 ~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 2 57778888888777 566666678888888888888884333337888888888888888887655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-40 Score=371.71 Aligned_cols=381 Identities=20% Similarity=0.198 Sum_probs=281.1
Q ss_pred cEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcc
Q 042603 330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALS 409 (874)
Q Consensus 330 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~ 409 (874)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45777777776 6776 2 36899999999999888888899999999999999988877777666778899999999
Q ss_pred cCcccccCCccccCCCCCCeEEccCCcCcccCCcc--ccccCCCCeEEccCCcCCCCCchh-hhccccCCeeecCCCccc
Q 042603 410 NNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPES--LSKCYLLGGLYLSDNHLSGKIPRW-LGSLLALQDIIMPNNNLE 486 (874)
Q Consensus 410 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 486 (874)
+|.+++..+..+..+++|++|++++|++++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99998888888888999999999999988744443 888889999999999998776765 788899999999999988
Q ss_pred ccCCccccCC--CCCCEEECcCCcCcccCCCC---------CCCCcccEEEeeCcccCccchhhhhcC---CCCcEEEcc
Q 042603 487 GPIPNEFCQL--DCLKVLDLSNNSIFGTLPSC---------LSLGSIEQVHLSKNKIEGQLESIIHYY---PYLVTLDLS 552 (874)
Q Consensus 487 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~---------~~~~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~Ls 552 (874)
+..+..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|++++..+..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8888777665 67889999999887655433 235678888888888887777666544 778888888
Q ss_pred CccCCCCCchhhcCCCCCcEEEccCccCcccCCcccc--CCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCcc
Q 042603 553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC--QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWD 630 (874)
Q Consensus 553 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~ 630 (874)
+|.+.+... ..+.+.+..+..+. ..++|+.|++++|++++..|..+..
T Consensus 248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------- 297 (455)
T 3v47_A 248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH---------------- 297 (455)
T ss_dssp TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT----------------
T ss_pred ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc----------------
Confidence 886654211 11111111111222 2356677777777766555544433
Q ss_pred ccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccch
Q 042603 631 HASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI 710 (874)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 710 (874)
+++|+.|++++|++++..|..|+.+++|++|+|++|++++..
T Consensus 298 --------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 298 --------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp --------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 236667777777777666777777777777777777777776
Q ss_pred hhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 711 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 711 p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
|..|+++++|++|||++|++++..|..+..+++|+.|++++|++++.++..+..+++++.+++.+||+.|+||
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777777777777777777777777777777777777777777777666666667777777777777777655
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.9e-39 Score=363.95 Aligned_cols=387 Identities=20% Similarity=0.182 Sum_probs=263.5
Q ss_pred CEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEcc
Q 042603 281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLS 360 (874)
Q Consensus 281 ~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~ 360 (874)
+.++.+++.+. .+|. + .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34566666665 5665 2 26899999999999888888899999999999999988777877777778999999999
Q ss_pred CCcCCcccchhccCCCCcCEEEcccCcCCCCchhH-HHhcCCCCCEEEcccCcccccCCcc-ccCCCCCCeEEccCCcCc
Q 042603 361 RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPER-MAMGCFSLEILALSNNTLQGHIFSE-KFNLTNLKRLQLDGNKFI 438 (874)
Q Consensus 361 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 438 (874)
+|.+++..|..|.++++|++|++++|.+++.++.. .+..+++|++|++++|.+++..+.. +..+++|++|++++|+++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888889999999999999999988654443 2445778888888888887776665 667788888888888877
Q ss_pred ccCCcccccc--CCCCeEEccCCcCCCCCchhhh--------ccccCCeeecCCCcccccCCccccCCCCCCEEECcCCc
Q 042603 439 GEIPESLSKC--YLLGGLYLSDNHLSGKIPRWLG--------SLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNS 508 (874)
Q Consensus 439 ~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 508 (874)
+..+..+..+ ..++.|++++|.+.+..+..++ .+++|+.|++++|.+.+..|..+...
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------------ 235 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA------------ 235 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH------------
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc------------
Confidence 7777666655 5677777777777654433221 33445555555555544444333222
Q ss_pred CcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC--CCCCcEEEccCccCcccCCc
Q 042603 509 IFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK--LPQLSYILLANNYIEGEIPV 586 (874)
Q Consensus 509 l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~ 586 (874)
...++|+.|++++|.+.+.. +..+.+.+..+..+.. .++|++|++++|++.+..|.
T Consensus 236 --------~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 236 --------IAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp --------TTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred --------ccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 01234444444444333211 1111111111122222 24555555666555555555
Q ss_pred cccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccc
Q 042603 587 QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRG 666 (874)
Q Consensus 587 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (874)
.+..+++|+.|++++|++++..|..+..
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------------------- 321 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWG---------------------------------------------------- 321 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTT----------------------------------------------------
T ss_pred hcccCCCCCEEECCCCcccccChhHhcC----------------------------------------------------
Confidence 5566666666666666665444433322
Q ss_pred ccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCe
Q 042603 667 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAV 746 (874)
Q Consensus 667 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 746 (874)
+++|+.|++++|.+++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|+.
T Consensus 322 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 322 --LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp --CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 236666777777777667777888888888888888888888888888888888888888888777677788888888
Q ss_pred EEccCCCCcccCCC
Q 042603 747 FRVAYNNLSGKIPD 760 (874)
Q Consensus 747 l~ls~N~l~~~~p~ 760 (874)
|++++|++++.+|.
T Consensus 400 L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 400 IWLHTNPWDCSCPR 413 (455)
T ss_dssp EECCSSCBCCCTTT
T ss_pred EEccCCCcccCCCc
Confidence 88888888888774
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.6e-39 Score=356.42 Aligned_cols=301 Identities=26% Similarity=0.306 Sum_probs=162.9
Q ss_pred CCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCce
Q 042603 155 LVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKT 234 (874)
Q Consensus 155 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 234 (874)
.+.|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|. .++++.+|+.+++..|..
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~----------------- 70 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLD----------------- 70 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHH-----------------
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhc-----------------
Confidence 45566666666666 45566666666666666666666655555 455555554444443321
Q ss_pred eccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCc
Q 042603 235 FNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS 314 (874)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~ 314 (874)
..++++++++|.+++ +|.. .++|++|++++|.
T Consensus 71 -------------------------------------------~~l~~L~l~~~~l~~-lp~~----~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 71 -------------------------------------------RQAHELELNNLGLSS-LPEL----PPHLESLVASCNS 102 (454)
T ss_dssp -------------------------------------------HTCSEEECTTSCCSC-CCSC----CTTCSEEECCSSC
T ss_pred -------------------------------------------cCCCEEEecCCcccc-CCCC----cCCCCEEEccCCc
Confidence 122333333333331 2221 1455566666665
Q ss_pred ccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh
Q 042603 315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394 (874)
Q Consensus 315 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 394 (874)
+.+. |. .+++|++|++++|.+. .++.. .++|++|++++|.+++ +| .|.++++|++|++++|+++ .+|.
T Consensus 103 l~~l-p~---~~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~ 170 (454)
T 1jl5_A 103 LTEL-PE---LPQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPD 170 (454)
T ss_dssp CSSC-CC---CCTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCC
T ss_pred CCcc-cc---ccCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCC
Confidence 5552 22 1356777777777766 34421 2578888888888885 56 5888888888888888887 3554
Q ss_pred HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc
Q 042603 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474 (874)
Q Consensus 395 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 474 (874)
. .++|++|++++|.+++. + .+..+++|++|++++|++++ +|.. .++|++|++++|.+. .+|. ++.+++
T Consensus 171 ~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~ 238 (454)
T 1jl5_A 171 L----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPF 238 (454)
T ss_dssp C----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTT
T ss_pred C----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCC
Confidence 2 34788888888887763 3 56778888888888888774 3332 246777777777776 4553 666777
Q ss_pred CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603 475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554 (874)
Q Consensus 475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n 554 (874)
|+.|++++|++++ +|.. .++|+.|++++|++.+ +|.. .++|++|++++|+++++.. ..++|++|++++|
T Consensus 239 L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N 307 (454)
T 1jl5_A 239 LTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSN 307 (454)
T ss_dssp CCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEESC----CCTTCCEEECCSS
T ss_pred CCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcccC----cCCcCCEEECcCC
Confidence 7777777776664 3322 3566666666666654 3332 2455555555555554321 0134555555555
Q ss_pred cCC
Q 042603 555 RLH 557 (874)
Q Consensus 555 ~l~ 557 (874)
+++
T Consensus 308 ~l~ 310 (454)
T 1jl5_A 308 EIR 310 (454)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.6e-38 Score=347.53 Aligned_cols=402 Identities=22% Similarity=0.256 Sum_probs=202.0
Q ss_pred eeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEc
Q 042603 255 QLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDV 334 (874)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 334 (874)
+|+++.++++.+ +.+|..++++++|+++++++|.+.|.+|..+ +.+.+|+.+++.+|.. .++++|++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 556666666665 5566666666666666666666655555543 3333332222222210 23466666
Q ss_pred cCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCccc
Q 042603 335 SNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQ 414 (874)
Q Consensus 335 s~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~ 414 (874)
++|.++ .+|.. .++|++|++++|.+++ +|.. .++|++|++++|+++ .++.. .++|++|++++|.++
T Consensus 79 ~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 79 NNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLE 144 (454)
T ss_dssp TTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCS
T ss_pred cCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCC
Confidence 666665 34431 3566666666666664 4432 256666666666666 23321 246667777777666
Q ss_pred ccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCcccc
Q 042603 415 GHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFC 494 (874)
Q Consensus 415 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 494 (874)
+ +| .+..+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|+.|++++|.+++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 5 33 46666667777777776664 33322 366677777776664 44 46666677777777776664 3322
Q ss_pred CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEE
Q 042603 495 QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYIL 574 (874)
Q Consensus 495 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 574 (874)
.++|++|++++|++. .+|.+..+++|++|++++|+++++.. ..++|++|++++|++++ +|.. .++|++|+
T Consensus 214 -~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred -cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 246677777777666 45554456667777777776665432 23567777777777664 3432 35677777
Q ss_pred ccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEE
Q 042603 575 LANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQ 654 (874)
Q Consensus 575 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (874)
+++|++++. |. -.++|+.|++++|++++ +|.
T Consensus 284 ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~-------------------------------------------- 314 (454)
T 1jl5_A 284 VSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD-------------------------------------------- 314 (454)
T ss_dssp CCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC--------------------------------------------
T ss_pred CcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC--------------------------------------------
Confidence 777776652 11 12566777777776652 110
Q ss_pred EEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc--
Q 042603 655 FTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG-- 732 (874)
Q Consensus 655 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~-- 732 (874)
..++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++||+++|++++
T Consensus 315 -------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 315 -------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp -------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC
T ss_pred -------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCC
Confidence 01256677777777774 4543 4667777777777773 444 35677777777777776
Q ss_pred cCChhhhcC-------------CCCCeEEccCCCCcc--cCCCccccCCCCCcccccCCCCCC
Q 042603 733 KIPPQLIVL-------------NTLAVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGNPFLC 780 (874)
Q Consensus 733 ~~p~~l~~l-------------~~L~~l~ls~N~l~~--~~p~~~~~~~~l~~~~~~gNp~~C 780 (874)
.+|.++..+ ++|+.|++++|++++ .+|.. +..+.+.+|...|
T Consensus 374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD 430 (454)
T ss_dssp CCCTTCCEEECCC--------------------------------------------------
T ss_pred CChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence 666666666 789999999999987 66653 3445566665544
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-36 Score=334.82 Aligned_cols=361 Identities=21% Similarity=0.161 Sum_probs=229.0
Q ss_pred ccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCC
Q 042603 102 QGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTS 181 (874)
Q Consensus 102 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 181 (874)
..++++++|++|++++|.+++. | .+.++++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 4677788888888888888865 4 578888888888888888864 3 77888888888888888764 3 778888
Q ss_pred CCEEEcccccccccCCccccCCCCCCCEEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEc
Q 042603 182 LRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISL 261 (874)
Q Consensus 182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 261 (874)
|++|++++|++++ ++ +..+++|++|++++|++++.
T Consensus 108 L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l----------------------------------------- 142 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI----------------------------------------- 142 (457)
T ss_dssp CCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-----------------------------------------
T ss_pred CCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-----------------------------------------
Confidence 8888888888876 43 67777888888877765420
Q ss_pred cCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCc
Q 042603 262 SGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLG 341 (874)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 341 (874)
.++.+++|+++++++|...+.++ +..+++|++|++++|++.+.. +..+
T Consensus 143 -----------~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l--------------- 190 (457)
T 3bz5_A 143 -----------DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQN--------------- 190 (457)
T ss_dssp -----------CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTC---------------
T ss_pred -----------ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccC---------------
Confidence 02234456666666664433332 134445555555555444321 3334
Q ss_pred cCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccc
Q 042603 342 HIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEK 421 (874)
Q Consensus 342 ~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 421 (874)
++|++|++++|.+++. .+..+++|++|++++|++++ +| ...+++|+.|++++|.+++.. .
T Consensus 191 ----------~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~ 250 (457)
T 3bz5_A 191 ----------KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD---V 250 (457)
T ss_dssp ----------TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---C
T ss_pred ----------CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC---H
Confidence 4555555555555433 24455555555555555553 33 223555555555555555433 2
Q ss_pred cCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCE
Q 042603 422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKV 501 (874)
Q Consensus 422 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 501 (874)
..+++|+.|++++|+ |+.+++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.
T Consensus 251 ~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~ 311 (457)
T 3bz5_A 251 STLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITE 311 (457)
T ss_dssp TTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred HHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceE
Confidence 344555566555442 3445566666555554 34566677777777665555543 3345555
Q ss_pred EECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603 502 LDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581 (874)
Q Consensus 502 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 581 (874)
|++++| ++|++|++++|+++++ + +..+++|+.|++++|++++ ++.|..|.+++|.+.
T Consensus 312 L~l~~~------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 312 LDLSQN------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE 368 (457)
T ss_dssp CCCTTC------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred echhhc------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence 555554 4677778888877775 2 7778888888888888875 245666678888887
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCCCchhhc
Q 042603 582 GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614 (874)
Q Consensus 582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 614 (874)
|. ..+..|+.+++++|+++|.+|+.+..
T Consensus 369 g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 369 AE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 65 34556777889999999999876544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=339.38 Aligned_cols=345 Identities=18% Similarity=0.190 Sum_probs=253.1
Q ss_pred CEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccC
Q 042603 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458 (874)
Q Consensus 379 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 458 (874)
+.++.+++.++ .+|..+ .+.++.|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555555 555433 24566777777777766666777777777777777777777677777777777777777
Q ss_pred CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccch
Q 042603 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLE 537 (874)
Q Consensus 459 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~ 537 (874)
|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+..+. +++|++|++++|+++++.+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 777765556677777788888888877777777777888888888888887776665544 7788888888888888777
Q ss_pred hhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCc-hhhccc
Q 042603 538 SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP-CLVNTA 616 (874)
Q Consensus 538 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~ 616 (874)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......+|+.|++++|+++ .+|. .+..
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~-- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRH-- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTT--
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcC--
Confidence 77888888888888888888777777888888888888888777777766666678888888888876 3442 2322
Q ss_pred cccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccC
Q 042603 617 LSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI 696 (874)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L 696 (874)
+++|+.|+|++|.+++..+..|..+++|
T Consensus 247 ----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 247 ----------------------------------------------------LVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred ----------------------------------------------------ccccCeeECCCCcCCccChhhccccccC
Confidence 3477888888888887777778888888
Q ss_pred CeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCC
Q 042603 697 RALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGN 776 (874)
Q Consensus 697 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gN 776 (874)
+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.+..+.. ..+.......+.++
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~ 353 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQ 353 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTC
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCcc
Confidence 88888888888888888888888888888888888777777788888888888888877543321 11223334556777
Q ss_pred CCCCCCC
Q 042603 777 PFLCGLP 783 (874)
Q Consensus 777 p~~C~~~ 783 (874)
...|..|
T Consensus 354 ~~~C~~p 360 (477)
T 2id5_A 354 QPTCATP 360 (477)
T ss_dssp CCBEEES
T ss_pred CceeCCc
Confidence 7777655
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=341.21 Aligned_cols=326 Identities=19% Similarity=0.172 Sum_probs=296.1
Q ss_pred CCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCC
Q 042603 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482 (874)
Q Consensus 403 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 482 (874)
-+.++.+++.++.. |..+ .++++.|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 35788888888754 4433 36899999999999988889999999999999999999988899999999999999999
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc
Q 042603 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561 (874)
Q Consensus 483 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 561 (874)
|.+.+..+..|.++++|++|++++|++.+..+..+. +++|++|++++|.++++.+..|..+++|+.|++++|++++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 999987777899999999999999999988877665 8999999999999999999999999999999999999998878
Q ss_pred hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCC
Q 042603 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP 641 (874)
Q Consensus 562 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (874)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+..+.+|.....
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------- 222 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------------------------- 222 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---------------------------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---------------------------
Confidence 88999999999999999999988889999999999999999987666654322
Q ss_pred CCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCC
Q 042603 642 PNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721 (874)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 721 (874)
..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+
T Consensus 223 ---------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (477)
T 2id5_A 223 ---------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275 (477)
T ss_dssp ---------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred ---------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCC
Confidence 13789999999999965557899999999999999999999999999999999
Q ss_pred EEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCC
Q 042603 722 SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 785 (874)
Q Consensus 722 ~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~ 785 (874)
.|+|++|++++..|..+..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|++.
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence 9999999999999999999999999999999999988888888999999999999999988753
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6e-35 Score=328.65 Aligned_cols=346 Identities=23% Similarity=0.323 Sum_probs=209.3
Q ss_pred CCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEE
Q 042603 302 NTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSL 381 (874)
Q Consensus 302 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 381 (874)
+++++.|++.++.+.... .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 355666666666654432 2455566666666666655 3333 3335566666666666654333 5556666666
Q ss_pred EcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcC
Q 042603 382 DISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 461 (874)
Q Consensus 382 ~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 461 (874)
++++|.+++ ++. +..+++|++|++++|.+.+.. .+..+++|++|+++ |.+.+. ..
T Consensus 118 ~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~----------------- 172 (466)
T 1o6v_A 118 TLFNNQITD-IDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KP----------------- 172 (466)
T ss_dssp ECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GG-----------------
T ss_pred ECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hh-----------------
Confidence 666666552 222 234555555555555554321 24445555555553 222211 11
Q ss_pred CCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhh
Q 042603 462 SGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH 541 (874)
Q Consensus 462 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 541 (874)
+..+++|+.|++++|.+.+. ..+..+++|++|++++|++.+..| ...+++|+.|++++|++++. ..+.
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 173 -------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp -------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred -------hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhh
Confidence 44444555555555544422 224455555555555555554333 22355566666666665554 2466
Q ss_pred cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccc
Q 042603 542 YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY 621 (874)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 621 (874)
.+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..| +..
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------- 307 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------- 307 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-------
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-------
Confidence 67777777777777775544 6677777777777777775443 6777778888888777764222 111
Q ss_pred ccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEec
Q 042603 622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 701 (874)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 701 (874)
+++|+.|++++|++++..| ++.+++|+.|++
T Consensus 308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 3477788888888876655 677888888888
Q ss_pred CCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCccc
Q 042603 702 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGK 757 (874)
Q Consensus 702 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 757 (874)
++|++++. ..++++++|+.|++++|++++..| +..+++|+.|++++|.+++.
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 88888865 367788888888888888887766 77888888888888888764
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.5e-35 Score=328.92 Aligned_cols=347 Identities=26% Similarity=0.352 Sum_probs=257.9
Q ss_pred CCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCc
Q 042603 276 HQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM 355 (874)
Q Consensus 276 ~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 355 (874)
.++.++.++++++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 4678999999999987 4665 3689999999999999988765 8899999999999999984 444 45589999
Q ss_pred EEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCC
Q 042603 356 HLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435 (874)
Q Consensus 356 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 435 (874)
+|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|++|+++ |.+.+.. .+..+++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999986543 899999999999999998 4554 4569999999997 4555433 3788999999999999
Q ss_pred cCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCC
Q 042603 436 KFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS 515 (874)
Q Consensus 436 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 515 (874)
++.+. ..+..+++|++|++++|.+.+..| ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~----- 256 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS----- 256 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-----
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc-----
Confidence 98754 347778888888888888876544 56677777777777776642 24555555666666555554
Q ss_pred CCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCC
Q 042603 516 CLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVR 595 (874)
Q Consensus 516 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 595 (874)
+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+
T Consensus 257 ------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 257 ------------------NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp ------------------CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred ------------------cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 3332 4455566666666666654333 5566666666666666665433 56667777
Q ss_pred EEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceE
Q 042603 596 LIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGI 675 (874)
Q Consensus 596 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 675 (874)
.|++++|++++..| +.. +++|+.|
T Consensus 313 ~L~L~~n~l~~~~~--~~~------------------------------------------------------l~~L~~L 336 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSS------------------------------------------------------LTKLQRL 336 (466)
T ss_dssp EEECCSSCCSCCGG--GGG------------------------------------------------------CTTCCEE
T ss_pred EEECcCCcCCCchh--hcc------------------------------------------------------CccCCEe
Confidence 77777777664332 111 3477778
Q ss_pred EcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc
Q 042603 676 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 733 (874)
Q Consensus 676 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 733 (874)
++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8888888754 468888999999999999998877 88899999999999999863
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-35 Score=329.04 Aligned_cols=366 Identities=17% Similarity=0.102 Sum_probs=204.9
Q ss_pred CCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCC
Q 042603 265 GDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIP 344 (874)
Q Consensus 265 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~ 344 (874)
...+..+..++.+++|++|++++|.+.+ +|. +..+++|++|++++|.+.+. ++..+++|++|++++|.+++ ++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~ 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred CcCcccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee
Confidence 3344444556666677777777776664 342 24566666666666666554 25556666666666666653 33
Q ss_pred hhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCC
Q 042603 345 VEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNL 424 (874)
Q Consensus 345 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 424 (874)
+..+++|++|++++|.+++. | +..+++|++|++++|++++ ++ ...+++|++|++++|...+.+ .+..+
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred ---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccC
Confidence 22355666666666666542 2 5556666666666666553 22 223555555555555333222 23444
Q ss_pred CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL 504 (874)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 504 (874)
++|++|++++|++++. | +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+
T Consensus 170 ~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~---- 236 (457)
T 3bz5_A 170 TQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT---- 236 (457)
T ss_dssp TTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS----
T ss_pred CcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC----
Confidence 5555555555555432 2 44445555555555554432 14444444444444444443 22 34444444
Q ss_pred cCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccC
Q 042603 505 SNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEI 584 (874)
Q Consensus 505 ~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 584 (874)
.|++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+
T Consensus 237 -------------------~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 237 -------------------YFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp -------------------EEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred -------------------EEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence 4444444444432 223344444444433 2333444444444444
Q ss_pred CccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccc
Q 042603 585 PVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY 664 (874)
Q Consensus 585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (874)
| +..+++|+.|++++|...+.+|.....+. .+..
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~----------------------~L~l---------------------- 314 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGIT----------------------ELDL---------------------- 314 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCS----------------------CCCC----------------------
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcce----------------------Eech----------------------
Confidence 3 23455555555555555444442111110 0000
Q ss_pred ccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCC
Q 042603 665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 744 (874)
Q Consensus 665 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 744 (874)
...++|+.|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.++|. ..+..|
T Consensus 315 --~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 315 --SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp --TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred --hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence 0124788999999999974 3 8899999999999999996 35677788999999987 355667
Q ss_pred CeEEccCCCCcccCCCcc
Q 042603 745 AVFRVAYNNLSGKIPDRV 762 (874)
Q Consensus 745 ~~l~ls~N~l~~~~p~~~ 762 (874)
..+++++|+++|.+|..+
T Consensus 377 ~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCBCCBTTBEEEECCTTC
T ss_pred CccccccCcEEEEcChhH
Confidence 889999999999999753
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-34 Score=311.70 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=60.1
Q ss_pred CCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEE
Q 042603 352 PGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQ 431 (874)
Q Consensus 352 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 431 (874)
++++.|++++|.++...+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45555555555555433333455555555555555554 22222223344444444444444444444444444444444
Q ss_pred ccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccc
Q 042603 432 LDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLE 486 (874)
Q Consensus 432 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 486 (874)
+++|+++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 4444444322222344444444444444444333333444444444444444443
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-34 Score=306.51 Aligned_cols=256 Identities=30% Similarity=0.558 Sum_probs=207.5
Q ss_pred CCeeecCCCcccc--cCCccccCCCCCCEEECcC-CcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEE
Q 042603 475 LQDIIMPNNNLEG--PIPNEFCQLDCLKVLDLSN-NSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLD 550 (874)
Q Consensus 475 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 550 (874)
++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+. +++|++|++++|++++..|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 3444444444444 4444444445555555552 444444444332 55566666666666666677788888899999
Q ss_pred ccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC-CCCEEEccCCcCCCCCCchhhccccccccccCCCCCc
Q 042603 551 LSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK-EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTW 629 (874)
Q Consensus 551 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~ 629 (874)
+++|.+++.+|..+..+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+...
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-------------- 197 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------- 197 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--------------
Confidence 999998888888888999999999999999888888888888 89999999999988888766542
Q ss_pred cccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccc
Q 042603 630 DHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 709 (874)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 709 (874)
.|+.|++++|.+++.+|..|+.+++|+.|+|++|++++.
T Consensus 198 -----------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 198 -----------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp -----------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred -----------------------------------------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 378899999999999999999999999999999999988
Q ss_pred hhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCCCCCC
Q 042603 710 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSC 788 (874)
Q Consensus 710 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l~~~c 788 (874)
+|. +..+++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|.. .++++++.+++.|||++||.|+. .|
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC-CC
Confidence 776 889999999999999999999999999999999999999999999996 88999999999999999998876 57
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-33 Score=325.53 Aligned_cols=334 Identities=17% Similarity=0.159 Sum_probs=180.6
Q ss_pred CCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeE
Q 042603 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL 430 (874)
Q Consensus 351 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 430 (874)
+++++.+++++|.+....+..|..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3466666666666665555555666666666666666653 332223345566666666666655555555555566666
Q ss_pred EccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCc
Q 042603 431 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF 510 (874)
Q Consensus 431 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 510 (874)
++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|+.|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66665555444444455555555555555555555555555555555555555554431 233445555555555544
Q ss_pred ccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccC
Q 042603 511 GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ 590 (874)
Q Consensus 511 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 590 (874)
+.. ...+|+.|++++|.++...+.. .++|+.|++++|.+++ +..+..
T Consensus 206 ~l~----~~~~L~~L~ls~n~l~~~~~~~---------------------------~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 206 TLA----IPIAVEELDASHNSINVVRGPV---------------------------NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp EEE----CCTTCSEEECCSSCCCEEECSC---------------------------CSCCCEEECCSSCCCC--CGGGGG
T ss_pred ccc----CCchhheeeccCCccccccccc---------------------------CCCCCEEECCCCCCCC--Chhhcc
Confidence 211 1223444444444444332221 1344444444444443 133444
Q ss_pred CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603 591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT 670 (874)
Q Consensus 591 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (874)
+++|+.|++++|.+++..|..+.. ++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------------l~ 278 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVK------------------------------------------------------MQ 278 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT------------------------------------------------------CS
T ss_pred CCCCCEEECCCCccCCCCHHHhcC------------------------------------------------------cc
Confidence 444555555555444433333322 12
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.. +..+++|+.|+++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 44555555555553 3444555666777777777776 45555666677777777777776542 4556677777777
Q ss_pred CCCCcccCCCccccCCCCCcccccCCCCCCCC
Q 042603 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL 782 (874)
Q Consensus 751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~ 782 (874)
+|++.+..+. ..+..+....+.+++..|+.
T Consensus 354 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 354 HNDWDCNSLR--ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SSCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCChhHH--HHHHHHhhhccccccccCCc
Confidence 7777654332 33555666667788888865
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.7e-32 Score=298.79 Aligned_cols=242 Identities=21% Similarity=0.200 Sum_probs=174.6
Q ss_pred CCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCE
Q 042603 326 LQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEI 405 (874)
Q Consensus 326 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~ 405 (874)
+++++.+++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++. +...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCE
Confidence 567788888888776 67777766678888888888888877777888888888888888888744 3344456888888
Q ss_pred EEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcc
Q 042603 406 LALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL 485 (874)
Q Consensus 406 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 485 (874)
|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++. .+..+++|+.+++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888888866666677888888888888888877777888888899999998888754 245567777777777766
Q ss_pred cccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhc
Q 042603 486 EGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWID 565 (874)
Q Consensus 486 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 565 (874)
.+. ...++|+.|++++|++... ... ..++|+.|++++|.+++. .++.
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-----------------------~~~---~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-----------------------RGP---VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-----------------------ECC---CCSSCCEEECCSSCCCCC--GGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-----------------------ccc---ccccccEEECCCCCCccc--HHHc
Confidence 532 2334566666666665432 111 124566666666666643 4566
Q ss_pred CCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603 566 KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 566 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (874)
.+++|++|++++|.+.+..|..+..+++|+.|++++|+++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 7777777777777777766777777777777777777665
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.1e-32 Score=290.97 Aligned_cols=304 Identities=21% Similarity=0.295 Sum_probs=188.1
Q ss_pred CCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeE
Q 042603 351 LPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRL 430 (874)
Q Consensus 351 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 430 (874)
+++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++. +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 5677777777777763 33 3666777777777777776 3443 34566666666666666542 235555666666
Q ss_pred EccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCc
Q 042603 431 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIF 510 (874)
Q Consensus 431 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 510 (874)
++++|++.+..+ +..+++|+.|++++|......+ .+. .+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~------------------------~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLS------------------------NMTGLNYLTVTESKVK 168 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGT------------------------TCTTCCEEECCSSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chh------------------------hCCCCcEEEecCCCcC
Confidence 666665553222 4455555555555554332222 244 4444445555544443
Q ss_pred ccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccC
Q 042603 511 GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ 590 (874)
Q Consensus 511 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 590 (874)
+..+ ...+++|++|++++|.+++..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 169 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp CCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred Cchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 2222 2234455555555555554433 5566667777777776664433 5666777777777777664433 666
Q ss_pred CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc
Q 042603 591 LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT 670 (874)
Q Consensus 591 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (874)
+++|+.|++++|.+++ ++ .+. .++
T Consensus 242 l~~L~~L~l~~n~l~~-~~-~~~------------------------------------------------------~l~ 265 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISD-IN-AVK------------------------------------------------------DLT 265 (347)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGT------------------------------------------------------TCT
T ss_pred CCCCCEEECCCCccCC-Ch-hHh------------------------------------------------------cCC
Confidence 7777777777776653 11 111 134
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|++++|++++. ..+..+++|+.|++++|++++..|..|+++++|++|++++|++++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 777777777777753 357778888888888888888888888888888888888888887665 7788888888888
Q ss_pred CCCCc
Q 042603 751 YNNLS 755 (874)
Q Consensus 751 ~N~l~ 755 (874)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 88775
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-32 Score=317.12 Aligned_cols=312 Identities=21% Similarity=0.219 Sum_probs=241.7
Q ss_pred CCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeE
Q 042603 375 MKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL 454 (874)
Q Consensus 375 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 454 (874)
+++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567888888888887 6777766678888888888888887777777777778888887777777666667777777777
Q ss_pred EccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCc
Q 042603 455 YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEG 534 (874)
Q Consensus 455 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~ 534 (874)
++++|.+++..+..|+.+++|+.|++++|.+.+..|..|..+++|++|++++|.+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------- 185 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----------------------- 185 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-----------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-----------------------
Confidence 777777775555556666667777777666666666666666666666666666543
Q ss_pred cchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhc
Q 042603 535 QLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVN 614 (874)
Q Consensus 535 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 614 (874)
.. +..+++|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..
T Consensus 186 ~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 186 VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp CC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGG
T ss_pred cC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhcc
Confidence 21 3345667777777776663 234567888888888887543322 3689999999999985 233332
Q ss_pred cccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccc
Q 042603 615 TALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLT 694 (874)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 694 (874)
+++|+.|+|++|.+++.+|..|+.++
T Consensus 253 ------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 253 ------------------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ------------------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ------------------------------------------------------CCCCCEEECCCCccCCCCHHHhcCcc
Confidence 45899999999999999999999999
Q ss_pred cCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCccccc
Q 042603 695 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYE 774 (874)
Q Consensus 695 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~ 774 (874)
+|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.. +..++++..+++.
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 99999999999996 5777888999999999999999 67888999999999999999998764 4567899999999
Q ss_pred CCCCCCCC
Q 042603 775 GNPFLCGL 782 (874)
Q Consensus 775 gNp~~C~~ 782 (874)
||||.|.|
T Consensus 354 ~N~~~~~~ 361 (597)
T 3oja_B 354 HNDWDCNS 361 (597)
T ss_dssp SSCEEHHH
T ss_pred CCCCCChh
Confidence 99999965
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-31 Score=289.27 Aligned_cols=307 Identities=24% Similarity=0.336 Sum_probs=230.7
Q ss_pred ccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCC
Q 042603 323 IHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFS 402 (874)
Q Consensus 323 ~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 402 (874)
+..+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCc
Confidence 456889999999999987 5664 3448999999999999985544 999999999999999998 4553 457999
Q ss_pred CCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCC
Q 042603 403 LEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPN 482 (874)
Q Consensus 403 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 482 (874)
|++|++++|.+++..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 9999999999987654 789999999999999766444 448899999999999999875433 66777777777777
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCch
Q 042603 483 NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPN 562 (874)
Q Consensus 483 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 562 (874)
|.+.+..+ +..+++|+.|++++|.+. +..+ +..+++|++|++++|++++..+
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQIT-----------------------DITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------CCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred Cccccccc--ccCCCccceeecccCCCC-----------------------CCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 77664322 555566666666655554 3322 4555666666666666664333
Q ss_pred hhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCC
Q 042603 563 WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPP 642 (874)
Q Consensus 563 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (874)
+..+++|++|++++|.+++. ..+..+++|+.|++++|++++. | .+..
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~---------------------------- 285 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNN---------------------------- 285 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGG----------------------------
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcC----------------------------
Confidence 56666677777777766643 3566777777777777777532 1 1111
Q ss_pred CCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCE
Q 042603 643 NGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES 722 (874)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 722 (874)
+++|+.|++++|.+++..|..++.+++|++|+|++|++++..| +..+++|++
T Consensus 286 --------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 286 --------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp --------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred --------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 3578888899998888888889999999999999999998777 888999999
Q ss_pred EECCCCcCc
Q 042603 723 LDLSYNLLH 731 (874)
Q Consensus 723 LdLs~N~l~ 731 (874)
||+++|+|+
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999885
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.4e-34 Score=320.48 Aligned_cols=362 Identities=18% Similarity=0.154 Sum_probs=204.0
Q ss_pred CcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCc----ccchhccCCCCcCEEEcccCcCCCCchhHHHhcCC-
Q 042603 327 QKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNG----SIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCF- 401 (874)
Q Consensus 327 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~- 401 (874)
++|++||+++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5677888888877643333445557788888888888774 34566777888888888888887555555555555
Q ss_pred ---CCCEEEcccCcccc----cCCccccCCCCCCeEEccCCcCcccCCcccc-----ccCCCCeEEccCCcCCCCC----
Q 042603 402 ---SLEILALSNNTLQG----HIFSEKFNLTNLKRLQLDGNKFIGEIPESLS-----KCYLLGGLYLSDNHLSGKI---- 465 (874)
Q Consensus 402 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~---- 465 (874)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57788888877764 3455666777777777777776543333222 1345666666666665432
Q ss_pred chhhhccccCCeeecCCCcccccCCcccc-----CCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhh
Q 042603 466 PRWLGSLLALQDIIMPNNNLEGPIPNEFC-----QLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESII 540 (874)
Q Consensus 466 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 540 (874)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.... ..+..+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l 223 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCGIV 223 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHHHH
Confidence 33444455566666655555433222221 133445555554444321000 123344
Q ss_pred hcCCCCcEEEccCccCCCCC-----chhhcCCCCCcEEEccCccCccc----CCccccCCCCCCEEEccCCcCCCCCCch
Q 042603 541 HYYPYLVTLDLSYNRLHGSI-----PNWIDKLPQLSYILLANNYIEGE----IPVQLCQLKEVRLIDLSHNNLSGHIPPC 611 (874)
Q Consensus 541 ~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 611 (874)
..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 45555555555555554321 11222355566666666655543 3444445566666666666554333322
Q ss_pred hhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc----CC
Q 042603 612 LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE----IP 687 (874)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p 687 (874)
+..... ...++|+.|++++|.+++. +|
T Consensus 304 l~~~l~-------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 304 LCETLL-------------------------------------------------EPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHT-------------------------------------------------STTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHhc-------------------------------------------------cCCccceeeEcCCCCCchHHHHHHH
Confidence 222100 0012556666666666544 34
Q ss_pred ccccccccCCeEecCCcccccchhhhccC-----CCCCCEEECCCCcCcc----cCChhhhcCCCCCeEEccCCCCcc
Q 042603 688 TQIGYLTRIRALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLHG----KIPPQLIVLNTLAVFRVAYNNLSG 756 (874)
Q Consensus 688 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~~----~~p~~l~~l~~L~~l~ls~N~l~~ 756 (874)
..+..+++|++|+|++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|+.|++++|++++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 44555566666666666666554444432 4566666666666664 556666666666666666666654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.9e-32 Score=288.83 Aligned_cols=251 Identities=29% Similarity=0.471 Sum_probs=181.3
Q ss_pred CCCeEEccCCcCCC--CCchhhhccccCCeeecCC-CcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEE
Q 042603 450 LLGGLYLSDNHLSG--KIPRWLGSLLALQDIIMPN-NNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQV 525 (874)
Q Consensus 450 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L 525 (874)
.++.|++++|.+.+ .+|..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+. +++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34455555555554 4555555555555555553 555555555555555555555555555555554333 5566666
Q ss_pred EeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCC-CCcEEEccCccCcccCCccccCCCCCCEEEccCCcC
Q 042603 526 HLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLP-QLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNL 604 (874)
Q Consensus 526 ~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l 604 (874)
++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666666666777777788888888887777777777776 788888888888777777777776 88888888888
Q ss_pred CCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccc
Q 042603 605 SGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG 684 (874)
Q Consensus 605 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 684 (874)
++..|..+.. +++|+.|++++|.+++
T Consensus 210 ~~~~~~~~~~------------------------------------------------------l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 210 EGDASVLFGS------------------------------------------------------DKNTQKIHLAKNSLAF 235 (313)
T ss_dssp EECCGGGCCT------------------------------------------------------TSCCSEEECCSSEECC
T ss_pred cCcCCHHHhc------------------------------------------------------CCCCCEEECCCCceee
Confidence 7665554433 3478888888888886
Q ss_pred cCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCC-Cccc
Q 042603 685 EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNN-LSGK 757 (874)
Q Consensus 685 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~-l~~~ 757 (874)
.+|. +..+++|++|+|++|++++.+|..|..+++|++|||++|+++|.+|.. ..+++|+.+++++|+ ++|.
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 6665 788899999999999999999999999999999999999999999886 888899999999998 7764
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.4e-30 Score=272.70 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=189.0
Q ss_pred CCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECc
Q 042603 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLS 505 (874)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 505 (874)
+++.++++++.++ .+|..+. +.++.|++++|.+++..+..++++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666666666665 3444332 467777777777776666677777777777777777777777777778888888888
Q ss_pred CCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCC--CCchhhcCCCCCcEEEccCccCccc
Q 042603 506 NNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG--SIPNWIDKLPQLSYILLANNYIEGE 583 (874)
Q Consensus 506 ~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~ 583 (874)
+|+++ .+|.... ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 88776 3343332 678888888888887777777888888888888887753 556667777777777777777763
Q ss_pred CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccc
Q 042603 584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYY 663 (874)
Q Consensus 584 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (874)
+|..+. ++|+.|++++|++++..|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------- 214 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKG------------------------------------------------- 214 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTT-------------------------------------------------
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence 443332 66777777777766544444332
Q ss_pred cccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC--
Q 042603 664 YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-- 741 (874)
Q Consensus 664 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-- 741 (874)
+++|+.|++++|.+++..+..++.+++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..+...
T Consensus 215 -----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 215 -----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp -----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred -----CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 236666777777776666666666777777777777776 556666667777777777777766555555332
Q ss_pred ----CCCCeEEccCCCCcc--cCCCccccCCCCCcccccCC
Q 042603 742 ----NTLAVFRVAYNNLSG--KIPDRVAQFSTFEEDSYEGN 776 (874)
Q Consensus 742 ----~~L~~l~ls~N~l~~--~~p~~~~~~~~l~~~~~~gN 776 (874)
..++.+++++|++.. ..|..+..+.+++.+++++|
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 556666666666642 33444445555555555554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.9e-30 Score=276.81 Aligned_cols=126 Identities=23% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 432 (874)
+++.++++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555555555554 3333332 34555555555554 222222233444555555555544444444444444444444
Q ss_pred cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcc
Q 042603 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL 485 (874)
Q Consensus 433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 485 (874)
++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 444444 2222221 3444444444444433333344444444444444444
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.4e-33 Score=315.01 Aligned_cols=308 Identities=18% Similarity=0.142 Sum_probs=173.4
Q ss_pred CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCccccc----ccCCccCCCcccEEEccCCcCCccCChhhhcCCC--
Q 042603 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGS----FRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP-- 352 (874)
Q Consensus 279 ~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~-- 352 (874)
.+++|+++++.+++.....++..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4455666666655433333345667777777777776642 3445666788888888888876544445555455
Q ss_pred --CCcEEEccCCcCCc----ccchhccCCCCcCEEEcccCcCCCCchhHHHhc----CCCCCEEEcccCcccccC----C
Q 042603 353 --GLMHLNLSRNAFNG----SIPSSFADMKMLKSLDISYNQLTGAIPERMAMG----CFSLEILALSNNTLQGHI----F 418 (874)
Q Consensus 353 --~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~----~ 418 (874)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 68888888888874 457778888888888888888775444443322 345666666666665432 2
Q ss_pred ccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhh-hccccCCeeecCCCccccc----CCccc
Q 042603 419 SEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWL-GSLLALQDIIMPNNNLEGP----IPNEF 493 (874)
Q Consensus 419 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~----~~~~~ 493 (874)
..+..+++|++|++++|.+.+..+..+.. .+ ...++|++|++++|.+++. ++..+
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 23334455555555555554322222211 00 0123455555555544432 23344
Q ss_pred cCCCCCCEEECcCCcCcccC-----CCCC-CCCcccEEEeeCcccCcc----chhhhhcCCCCcEEEccCccCCCCCchh
Q 042603 494 CQLDCLKVLDLSNNSIFGTL-----PSCL-SLGSIEQVHLSKNKIEGQ----LESIIHYYPYLVTLDLSYNRLHGSIPNW 563 (874)
Q Consensus 494 ~~l~~L~~L~L~~n~l~~~~-----~~~~-~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 563 (874)
..+++|++|++++|++.+.. +... .+++|++|++++|++++. .+..+..+++|++|++++|.+++..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 45555555666555554321 1111 144566666666655553 3445566777777777777766443333
Q ss_pred hcC-----CCCCcEEEccCccCccc----CCccccCCCCCCEEEccCCcCCC
Q 042603 564 IDK-----LPQLSYILLANNYIEGE----IPVQLCQLKEVRLIDLSHNNLSG 606 (874)
Q Consensus 564 ~~~-----l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 606 (874)
+.. .++|++|++++|.+++. ++..+..+++|+.|++++|.+++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 332 24666666666666543 23444455666666666665543
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.7e-30 Score=275.20 Aligned_cols=287 Identities=18% Similarity=0.257 Sum_probs=163.0
Q ss_pred CCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECc
Q 042603 426 NLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLS 505 (874)
Q Consensus 426 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 505 (874)
+++.++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555666665554 3343332 456666666666665555566666666666666666666666666666777777777
Q ss_pred CCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCC--CCchhhcCCCCCcEEEccCccCccc
Q 042603 506 NNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHG--SIPNWIDKLPQLSYILLANNYIEGE 583 (874)
Q Consensus 506 ~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~ 583 (874)
+|++. .+|.... ++|++|++++|+++++.+..|..+++|++|++++|.++. ..|..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 77665 3333222 566666666666666666666666666666666666642 445555555 66666666666653
Q ss_pred CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccc
Q 042603 584 IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYY 663 (874)
Q Consensus 584 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (874)
+|..+. ++|+.|++++|.+++..|..+..
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------------------------------------------- 215 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------------------------------------------- 215 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------------------------------------------
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcC-------------------------------------------------
Confidence 333332 45566666666655433332222
Q ss_pred cccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC--
Q 042603 664 YRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-- 741 (874)
Q Consensus 664 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-- 741 (874)
+++|+.|++++|++++..|..++.+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+...
T Consensus 216 -----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 216 -----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp -----CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred -----CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 235555666666666555555666666666666666666 455556666666666666666665554444432
Q ss_pred ----CCCCeEEccCCCCc--ccCCCccccCCCCCcccccCC
Q 042603 742 ----NTLAVFRVAYNNLS--GKIPDRVAQFSTFEEDSYEGN 776 (874)
Q Consensus 742 ----~~L~~l~ls~N~l~--~~~p~~~~~~~~l~~~~~~gN 776 (874)
.+|+.+++++|++. +..|..+..++.++.+++.+|
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 34556666666555 444444555555555555554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1e-29 Score=272.35 Aligned_cols=243 Identities=23% Similarity=0.292 Sum_probs=150.9
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 432 (874)
+++.++++++.++ .+|..+. +++++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6777888777776 4554443 56777777777777 344433445777777777777777766777777777777777
Q ss_pred cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccc--cCCccccCCCCCCEEECcCCcCc
Q 042603 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEG--PIPNEFCQLDCLKVLDLSNNSIF 510 (874)
Q Consensus 433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~ 510 (874)
++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+.++++|+.|++++|++.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777766 3343332 567777777777766656666667777777777776642 45556666666666666666665
Q ss_pred ccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccC
Q 042603 511 GTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQ 590 (874)
Q Consensus 511 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 590 (874)
. +|.... ++|++|++++|++++..+..+..+++|++|++++|++++..+.++..+++|++|++++|+++ .+|..+..
T Consensus 185 ~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 185 T-IPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp S-CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred c-CCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 3 332222 45666666666666555555555666666666666655555555555555555555555555 44555555
Q ss_pred CCCCCEEEccCCcCC
Q 042603 591 LKEVRLIDLSHNNLS 605 (874)
Q Consensus 591 l~~L~~L~Ls~N~l~ 605 (874)
+++|+.|++++|+++
T Consensus 262 l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 262 HKYIQVVYLHNNNIS 276 (330)
T ss_dssp CSSCCEEECCSSCCC
T ss_pred CCCcCEEECCCCcCC
Confidence 555555555555554
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8.7e-28 Score=268.06 Aligned_cols=249 Identities=24% Similarity=0.285 Sum_probs=182.1
Q ss_pred eeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCcc
Q 042603 477 DIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR 555 (874)
Q Consensus 477 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 555 (874)
.++..+..++ .+|..+. ++++.|+|++|++.+..+..+. +++|++|++++|+++++.+..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3444444444 2333332 4566666666666655544433 6666667777777776667777777888888888888
Q ss_pred CCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCch-hhccccccccccCCCCCccccCC
Q 042603 556 LHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPC-LVNTALSEGYYDAVAPTWDHASA 634 (874)
Q Consensus 556 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~~~~~~~~~~~ 634 (874)
+++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|+..+.+|.. +..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------------- 183 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-------------------- 183 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------------------
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc--------------------
Confidence 87666667777888888888888887766677778888888888875544333321 111
Q ss_pred CCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhc
Q 042603 635 PALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTF 714 (874)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 714 (874)
+++|+.|++++|+++ .+| .+..+++|+.|+|++|++++..|..|
T Consensus 184 ----------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 184 ----------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp ----------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred ----------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhh
Confidence 357788888888887 455 47788888888888888888888888
Q ss_pred cCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 715 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 715 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
.++++|+.|+|++|++++..|..+..+++|+.|++++|++++.++..+..+++++.+++.+|||.|+|.+
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 8888888888888888888888888888888888888888888887778888888888899999998765
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=266.16 Aligned_cols=177 Identities=19% Similarity=0.168 Sum_probs=84.7
Q ss_pred CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL 504 (874)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 504 (874)
+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 33444555555554 3333322 24555555555555444444555555555555555555544445555555555555
Q ss_pred cCCcCcccCCCCC-CCCcccEEEeeCcccCccch-hhhhcCCCCcEEEccCc-cCCCCCchhhcCCCCCcEEEccCccCc
Q 042603 505 SNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLE-SIIHYYPYLVTLDLSYN-RLHGSIPNWIDKLPQLSYILLANNYIE 581 (874)
Q Consensus 505 ~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~ 581 (874)
++|++++..+..+ .+++|++|++++|+++++.+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|++.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 5555543322212 24445555555554444433 34444455555555544 233333444444455555555555544
Q ss_pred ccCCccccCCCCCCEEEccCCcC
Q 042603 582 GEIPVQLCQLKEVRLIDLSHNNL 604 (874)
Q Consensus 582 ~~~~~~~~~l~~L~~L~Ls~N~l 604 (874)
+..|..+..+++|+.|++++|.+
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCS
T ss_pred ccCHHHHhccccCCeecCCCCcc
Confidence 44444444444555555554444
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.6e-27 Score=266.99 Aligned_cols=231 Identities=21% Similarity=0.215 Sum_probs=143.4
Q ss_pred CCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEcc
Q 042603 498 CLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576 (874)
Q Consensus 498 ~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 576 (874)
+++.|+|++|++++..+..+. +++|++|++++|+++++.+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 444444444444444333332 4445555555555555555555555666666666666665555555566666666666
Q ss_pred CccCcccCCccccCCCCCCEEEccCCcCCCCCCch-hhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPC-LVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF 655 (874)
Q Consensus 577 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (874)
+|++.+..+..+..+++|+.|++++|+..+.+|.. +..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~----------------------------------------- 194 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG----------------------------------------- 194 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-----------------------------------------
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-----------------------------------------
Confidence 66666555555666666666666664433333221 111
Q ss_pred EecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603 656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735 (874)
Q Consensus 656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 735 (874)
+++|+.|++++|++++ +| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|
T Consensus 195 -------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 195 -------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp -------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred -------------CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 3466666666666663 33 36667777777777777777777777777777777777777777777
Q ss_pred hhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 736 PQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 736 ~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
..+..+++|+.|++++|++++.++..+..+++++.+++.+|||.|+|.+
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 7777777777777777777777766667777777777777888787654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=253.86 Aligned_cols=232 Identities=19% Similarity=0.245 Sum_probs=167.6
Q ss_pred CCCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCcc--chhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEE
Q 042603 497 DCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQ--LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI 573 (874)
Q Consensus 497 ~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 573 (874)
++|++|++++|++....+..+ .+++|++|++++|+++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 355555666555553333322 355666666666665533 2455566777778888877777 355567777888888
Q ss_pred EccCccCcccCC-ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccce
Q 042603 574 LLANNYIEGEIP-VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET 652 (874)
Q Consensus 574 ~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (874)
++++|++.+..+ ..+..+++|+.|++++|.+++..|..+..
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------- 148 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------------- 148 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--------------------------------------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--------------------------------------
Confidence 888887775554 56777788888888888776554443332
Q ss_pred EEEEecCcccccccccccCcceEEcCCCcccc-cCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc
Q 042603 653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731 (874)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 731 (874)
+++|+.|++++|.+++ .+|..+..+++|++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus 149 ----------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 149 ----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ----------------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 3477788888888876 57778888888888888888888877888888888888888888888
Q ss_pred ccCChhhhcCCCCCeEEccCCCCcccCCCccccCC-CCCcccccCCCCCCCCC
Q 042603 732 GKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 732 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~~C~~~ 783 (874)
+..+..+..+++|+.|++++|++++.+|..+..++ +++.+++.|||+.|+|+
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 77777788888888888888888888887777774 78888888888888654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8e-30 Score=297.24 Aligned_cols=430 Identities=14% Similarity=0.078 Sum_probs=215.5
Q ss_pred hhhhccCCCCCCEEEccCCccc---ccccC-----------ccccCCCCCcEEECCCccccccchhHHHHHhcCCC-CCE
Q 042603 22 LLQSIASFSSLKYLSMRGCVLK---GALHG-----------QDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMAS-LRI 86 (874)
Q Consensus 22 ~~~~l~~l~~L~~L~Ls~~~~~---~~~~~-----------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-L~~ 86 (874)
....+.++++|++|++++|... +.+|. .....+++|++|++++|.+. ......+...++. |++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcE
Confidence 3445566777777777665321 11110 01115677777777777543 1111111222344 777
Q ss_pred EEccccCCCCCccccccccCCCCCcEEEcCCCCCCCc----chhcccCCCCCCEEEccCCcCCCC----CcccccCCCCC
Q 042603 87 LSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDS----LLWCLANMTSLQVLNVASNQLTGN----FPPGFCELVLL 158 (874)
Q Consensus 87 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L 158 (874)
|++++|.......++....++++|++|++++|.+++. ++..+.++++|++|++++|.+++. ++..+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 7777665211111222334677777777777766554 333445677777777777777622 33344567777
Q ss_pred CEEEccCCcCCCCccccccCCCCCCEEEccccccc---ccCCccccCCCCCCCEEEccccccccccCcccccCCCCCcee
Q 042603 159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT---ENISSSPLMHLTSIEELILSNNHFQIPISLEPLFNLSKLKTF 235 (874)
Q Consensus 159 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~l 235 (874)
++|++++|.+.+ ++..+.++++|++|+++..... +.... .+..+++|+.|+++++...
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~----------------- 283 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM-NLVFPRKLCRLGLSYMGPN----------------- 283 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS-CCCCCTTCCEEEETTCCTT-----------------
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH-HhhccccccccCccccchh-----------------
Confidence 777777777764 5567777777888777653222 11122 4556667777766553111
Q ss_pred ccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcc
Q 042603 236 NGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSL 315 (874)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l 315 (874)
.+|..+..+++|++|++++|.+.+.....+...+++|++|+++++-.
T Consensus 284 ---------------------------------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~ 330 (592)
T 3ogk_B 284 ---------------------------------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330 (592)
T ss_dssp ---------------------------------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred ---------------------------------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC
Confidence 12223333444444444444443322222224445555555552211
Q ss_pred cccccCCccCCCcccEEEccC-----------CcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccC-CCCcCEEEc
Q 042603 316 FGSFRMPIHCLQKLATLDVSN-----------NFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFAD-MKMLKSLDI 383 (874)
Q Consensus 316 ~~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l 383 (874)
.+..+.....+++|++|++++ +.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|++
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 111222223345555555552 23332212222233556666666555555544444443 555666666
Q ss_pred c----cCcCCCC-----chhHHHhcCCCCCEEEcccCc--ccccCCcccc-CCCCCCeEEccCCcCccc-CCccccccCC
Q 042603 384 S----YNQLTGA-----IPERMAMGCFSLEILALSNNT--LQGHIFSEKF-NLTNLKRLQLDGNKFIGE-IPESLSKCYL 450 (874)
Q Consensus 384 ~----~n~i~~~-----~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~~~~ 450 (874)
+ .|.+++. ++. +..++++|++|+++.|. +++.....+. .+++|++|++++|++++. .+..+..+++
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred eecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 4 4445432 111 12345666666665332 3333222222 355666666666665542 2333455666
Q ss_pred CCeEEccCCcCCCC-CchhhhccccCCeeecCCCcccccCCccc-cCCCCCCEEECcC
Q 042603 451 LGGLYLSDNHLSGK-IPRWLGSLLALQDIIMPNNNLEGPIPNEF-CQLDCLKVLDLSN 506 (874)
Q Consensus 451 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~ 506 (874)
|++|++++|.+++. ++.....+++|+.|++++|++++.....+ ..++.+....+..
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 66666666665432 23334456667777777776654432222 2445555444443
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-29 Score=295.18 Aligned_cols=377 Identities=13% Similarity=0.031 Sum_probs=207.2
Q ss_pred CCCCCCEEEccCCcccccccCCccC-CC-cccEEEccCCcC-CccCChhhhcCCCCCcEEEccCCcCCcc----cchhcc
Q 042603 301 NNTDLKTLLLANNSLFGSFRMPIHC-LQ-KLATLDVSNNFF-LGHIPVEIGTYLPGLMHLNLSRNAFNGS----IPSSFA 373 (874)
Q Consensus 301 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~Ls~n~l-~~~i~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~ 373 (874)
.+++|++|++++|.+.+.....+.. ++ +|++|++++|.- .......+...+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5667777777777665544333333 23 377777777651 1100111222356777777777766544 333445
Q ss_pred CCCCcCEEEcccCcCCCCchh---HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCc---ccCCccccc
Q 042603 374 DMKMLKSLDISYNQLTGAIPE---RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFI---GEIPESLSK 447 (874)
Q Consensus 374 ~l~~L~~L~l~~n~i~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~ 447 (874)
.+++|++|++++|.+++.-.. .+...+++|+.|++++|.+.+ ++..+..+++|++|+++..... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 567777777777776522111 122346777777777776665 3455566677777777643222 223345566
Q ss_pred cCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcc-cCCCCC-CCCcccE
Q 042603 448 CYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFG-TLPSCL-SLGSIEQ 524 (874)
Q Consensus 448 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~-~~~~L~~ 524 (874)
+++|+.++++++.. +.+|..+..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.. .++... .+++|++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 67777777776533 3556666667777777777776543322 234666777777776 33322 122221 2556777
Q ss_pred EEee-----------CcccCccc-hhhhhcCCCCcEEEccCccCCCCCchhhcC-CCCCcEEEcc----CccCccc----
Q 042603 525 VHLS-----------KNKIEGQL-ESIIHYYPYLVTLDLSYNRLHGSIPNWIDK-LPQLSYILLA----NNYIEGE---- 583 (874)
Q Consensus 525 L~l~-----------~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~---- 583 (874)
|+++ .|.+++.. ......+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 7776 24555432 223445677777777666666555555554 6667777774 4455542
Q ss_pred -CCccccCCCCCCEEEccCCc--CCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCc
Q 042603 584 -IPVQLCQLKEVRLIDLSHNN--LSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNM 660 (874)
Q Consensus 584 -~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (874)
++..+.++++|+.|+++++. +++..+..+..
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---------------------------------------------- 460 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---------------------------------------------- 460 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----------------------------------------------
Confidence 22224456666666665432 33222222111
Q ss_pred ccccccccccCcceEEcCCCccccc-CCccccccccCCeEecCCcccccc-hhhhccCCCCCCEEECCCCcCccc
Q 042603 661 SYYYRGRILTSMSGIDLSCNKLTGE-IPTQIGYLTRIRALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGK 733 (874)
Q Consensus 661 ~~~~~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~ 733 (874)
.+++|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|++++.
T Consensus 461 -------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 461 -------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp -------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred -------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 123566666666666542 333445566666666666666543 233344566666666666666544
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.4e-28 Score=260.49 Aligned_cols=206 Identities=20% Similarity=0.171 Sum_probs=113.0
Q ss_pred CCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeE
Q 042603 375 MKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGL 454 (874)
Q Consensus 375 l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 454 (874)
|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 334444566666665 5555432 356666666666665555556666666666666666666555666666666666
Q ss_pred EccCCcCCCCCchhhhccccCCeeecCCCcccccCC-ccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccC
Q 042603 455 YLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP-NEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIE 533 (874)
Q Consensus 455 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~ 533 (874)
++++|.+++..+..++.+++|++|++++|++.+..+ ..+..+++|++|++++|+ .++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~----------------------~~~ 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD----------------------TFT 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS----------------------SCC
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc----------------------ccc
Confidence 666666664444445566666666666666553332 245555555555555552 233
Q ss_pred ccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCC
Q 042603 534 GQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSG 606 (874)
Q Consensus 534 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 606 (874)
+..+..+..+++|++|++++|++++..|..+..+++|++|++++|++....+..+..+++|+.|++++|++++
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 3334444445555555555555554445555555555555555555543222223345555566666665543
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.4e-28 Score=254.62 Aligned_cols=87 Identities=25% Similarity=0.351 Sum_probs=55.9
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC-CCCeEEc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-TLAVFRV 749 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~l~l 749 (874)
+|+.|++++|++++..|..++.+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..+..++ +|+.|++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 555555555655555566666666666666666666666555666666666666666666666666666663 6666666
Q ss_pred cCCCCccc
Q 042603 750 AYNNLSGK 757 (874)
Q Consensus 750 s~N~l~~~ 757 (874)
++|++++.
T Consensus 256 ~~N~~~~~ 263 (306)
T 2z66_A 256 TQNDFACT 263 (306)
T ss_dssp TTCCEECS
T ss_pred cCCCeecc
Confidence 66666554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.7e-27 Score=243.95 Aligned_cols=226 Identities=19% Similarity=0.200 Sum_probs=111.8
Q ss_pred CeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603 476 QDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554 (874)
Q Consensus 476 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n 554 (874)
+.++.+++.++. +|..+ .++|++|++++|++++..+..+. +++|++|++++|.++++.+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 345555555542 23222 23555555555555544433322 445555555555555544445555555555555555
Q ss_pred c-CCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccC
Q 042603 555 R-LHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633 (874)
Q Consensus 555 ~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 633 (874)
+ +....|..+..+++|++|++++|++.+..|..+..+++|+.|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------------------------------------ 134 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------------------------------------ 134 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE------------------------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE------------------------------------
Confidence 4 443334444455555555555555544444444444444444
Q ss_pred CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhh
Q 042603 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713 (874)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 713 (874)
++++|++++..+..|+.+++|++|+|++|++++..+..
T Consensus 135 ------------------------------------------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 135 ------------------------------------------YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp ------------------------------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ------------------------------------------ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 45555444444444455555555555555555444444
Q ss_pred ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCC
Q 042603 714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL 782 (874)
Q Consensus 714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~ 782 (874)
|..+++|++|++++|++++..|..+..+++|+.|++++|++++.++..+..+++++.+++.+||+.|+|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 555555555555555555555555555555555555555555444444444555555555555555544
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.7e-26 Score=241.69 Aligned_cols=251 Identities=22% Similarity=0.229 Sum_probs=167.8
Q ss_pred eEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcc
Q 042603 453 GLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNK 531 (874)
Q Consensus 453 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 531 (874)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|++.+..|..+. +++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3444444444 233222 23555556666655555555566666666666666666555444433 5666666666665
Q ss_pred -cCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCc
Q 042603 532 -IEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP 610 (874)
Q Consensus 532 -i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 610 (874)
++...+..+..+++|++|++++|++++..|..+.++++|++|++++|++.+..+..+..+++|+.|++++|++++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 6666666777778888888888888877777788888888888888888866666677788888888888877633222
Q ss_pred hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccc
Q 042603 611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI 690 (874)
Q Consensus 611 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~ 690 (874)
.+.. +++|+.|++++|.+++..|..|
T Consensus 172 ~~~~------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 172 AFRG------------------------------------------------------LHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp TTTT------------------------------------------------------CTTCCEEECCSSCCCEECTTTT
T ss_pred HhcC------------------------------------------------------ccccCEEECCCCcccccCHhHc
Confidence 2222 3477778888888887778888
Q ss_pred cccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCc
Q 042603 691 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDR 761 (874)
Q Consensus 691 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 761 (874)
+.+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+.. .....++.+..+.+.+.+..|..
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 88888888888888888877777888888888888888887654432 11223444456667777666654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.3e-26 Score=255.26 Aligned_cols=226 Identities=19% Similarity=0.218 Sum_probs=130.7
Q ss_pred cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552 (874)
Q Consensus 474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls 552 (874)
+++.|++++|++++..+..|.++++|+.|+|++|++.+..+..+. +++|++|++++|+++++.+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 444444444444444444444555555555555555444433332 4455555555555555555555555555555555
Q ss_pred CccCCCCCchhhcCCCCCcEEEccCc-cCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccc
Q 042603 553 YNRLHGSIPNWIDKLPQLSYILLANN-YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDH 631 (874)
Q Consensus 553 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~ 631 (874)
+|++++..+..|.++++|++|++++| .+....+..+.++++|+.|++++|++++ +|. +.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~------------------ 215 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LT------------------ 215 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CT------------------
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-cc------------------
Confidence 55555444445555566666666553 3333333345666666666666666652 221 00
Q ss_pred cCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchh
Q 042603 632 ASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 711 (874)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 711 (874)
.+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|
T Consensus 216 ------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 216 ------------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp ------------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred ------------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 13466667777777776666677777777777777777776667
Q ss_pred hhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc
Q 042603 712 TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755 (874)
Q Consensus 712 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 755 (874)
..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777777777777777666666667777777777777654
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2e-26 Score=245.46 Aligned_cols=222 Identities=18% Similarity=0.290 Sum_probs=135.3
Q ss_pred CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccC
Q 042603 475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553 (874)
Q Consensus 475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~ 553 (874)
++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ .+++|++|++++|+++ .+|..+..+++|++|++++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 333444444333 23333333444444444444444 333222 2444444444444444 2244455556666666666
Q ss_pred ccCCCCCchhhc---------CCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccC
Q 042603 554 NRLHGSIPNWID---------KLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDA 624 (874)
Q Consensus 554 n~l~~~~~~~~~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 624 (874)
|.+.+.+|..+. ++++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|+.+..
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~---------- 227 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH---------- 227 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG----------
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc----------
Confidence 555555555443 3677777777777776 566667777777777777777763 4444333
Q ss_pred CCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCc
Q 042603 625 VAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN 704 (874)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 704 (874)
+++|+.|++++|.+.+.+|..++.+++|++|+|++|
T Consensus 228 --------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 228 --------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp --------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred --------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 236777777777777777777777777777777777
Q ss_pred ccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc
Q 042603 705 NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS 755 (874)
Q Consensus 705 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 755 (874)
++.+.+|..++++++|++|||++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777777777777777777777777777777777765543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=254.69 Aligned_cols=247 Identities=20% Similarity=0.212 Sum_probs=138.0
Q ss_pred CCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcC
Q 042603 427 LKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSN 506 (874)
Q Consensus 427 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 506 (874)
.+.++..+..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 445555555554 3343332 3455556666555555555555555555555555555555555555555555555555
Q ss_pred CcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCc-cCcccCC
Q 042603 507 NSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN-YIEGEIP 585 (874)
Q Consensus 507 n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 585 (874)
|+++ ++.+..|..+++|++|++++|+++...+..|.++++|++|++++| .+....+
T Consensus 122 n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 122 NRLT-----------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp SCCS-----------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CcCC-----------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 5554 444444444455555555555554444444555555555555552 2222223
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccc
Q 042603 586 VQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYR 665 (874)
Q Consensus 586 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (874)
..|.++++|+.|++++|+++ .+|. +.
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-~~~~-~~---------------------------------------------------- 204 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-EIPN-LT---------------------------------------------------- 204 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-SCCC-CT----------------------------------------------------
T ss_pred chhhcccccCeecCCCCcCc-cccc-cC----------------------------------------------------
Confidence 34555555555555555554 2221 00
Q ss_pred cccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCC
Q 042603 666 GRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA 745 (874)
Q Consensus 666 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~ 745 (874)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+
T Consensus 205 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 205 --PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp --TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred --CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 023566666666666666666666666666666666666666666666666677777777766666666666666666
Q ss_pred eEEccCCCCc
Q 042603 746 VFRVAYNNLS 755 (874)
Q Consensus 746 ~l~ls~N~l~ 755 (874)
.|++++|++.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 6776666654
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.9e-26 Score=245.61 Aligned_cols=225 Identities=16% Similarity=0.198 Sum_probs=203.8
Q ss_pred CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603 496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575 (874)
Q Consensus 496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 575 (874)
.+.++.|++++|++....+....+++|++|++++|.++ ..|..+..+++|++|++++|+++ .+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 47899999999999844444555999999999999999 66778899999999999999999 78999999999999999
Q ss_pred cCccCcccCCccccC---------CCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCC
Q 042603 576 ANNYIEGEIPVQLCQ---------LKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSP 646 (874)
Q Consensus 576 ~~n~~~~~~~~~~~~---------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (874)
++|++.+.+|..+.. +++|+.|++++|+++ .+|..+..+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l------------------------------- 205 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL------------------------------- 205 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-------------------------------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-------------------------------
Confidence 999999999987765 999999999999998 788766553
Q ss_pred CCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECC
Q 042603 647 MGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 726 (874)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 726 (874)
++|+.|++++|.+++ +|..++.+++|++|+|++|++.+.+|..|+++++|++|+|+
T Consensus 206 -----------------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 206 -----------------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp -----------------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred -----------------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 489999999999995 77789999999999999999999999999999999999999
Q ss_pred CCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCC
Q 042603 727 YNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPF 778 (874)
Q Consensus 727 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~ 778 (874)
+|++.+.+|..+..+++|+.|++++|++.+.+|..+.+++++..+.+..|..
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 9999999999999999999999999999999999999999988887765543
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.6e-28 Score=256.18 Aligned_cols=266 Identities=20% Similarity=0.169 Sum_probs=198.0
Q ss_pred CeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCC
Q 042603 428 KRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNN 507 (874)
Q Consensus 428 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 507 (874)
+..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555555544444445556678888888888877777778888888888888888776544 777888888888888
Q ss_pred cCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCcc
Q 042603 508 SIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQ 587 (874)
Q Consensus 508 ~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 587 (874)
++++..+ .++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++.+..+..
T Consensus 91 ~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 8775432 367888888888888776543 567888888888888777777888888888888888888776666
Q ss_pred cc-CCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccccc
Q 042603 588 LC-QLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRG 666 (874)
Q Consensus 588 ~~-~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (874)
+. .+++|+.|++++|.+++. |..
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~~------------------------------------------------------- 187 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KGQ------------------------------------------------------- 187 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-ECC-------------------------------------------------------
T ss_pred HhhccCcCCEEECCCCcCccc-ccc-------------------------------------------------------
Confidence 64 678888888888888632 110
Q ss_pred ccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc-ccCChhhhcCCCCC
Q 042603 667 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLNTLA 745 (874)
Q Consensus 667 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~ 745 (874)
..+++|+.|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+
T Consensus 188 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 013578888888888885 4555888889999999999988 46777888889999999999988 77788888888888
Q ss_pred eEEccCC-CCcccCCC
Q 042603 746 VFRVAYN-NLSGKIPD 760 (874)
Q Consensus 746 ~l~ls~N-~l~~~~p~ 760 (874)
.+++++| .+.|..|.
T Consensus 266 ~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 266 TVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHSSSSC
T ss_pred EEECCCchhccCCchh
Confidence 8888844 56665544
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.8e-27 Score=264.07 Aligned_cols=244 Identities=21% Similarity=0.233 Sum_probs=130.3
Q ss_pred cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccC
Q 042603 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553 (874)
Q Consensus 474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~ 553 (874)
+|+.|++++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|+.|++++|.++++.+ .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence 44555555555544444445555555555555555544333 3334455555555555544332 14555555555
Q ss_pred ccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccC
Q 042603 554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633 (874)
Q Consensus 554 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 633 (874)
|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------------------- 166 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA------------------- 166 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-------------------
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-------------------
Confidence 555543332 2355555556655555555555555556666666666555444433321
Q ss_pred CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhh
Q 042603 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713 (874)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 713 (874)
.+++|+.|+|++|.+++..+ ...+++|+.|+|++|++++.+|.
T Consensus 167 ----------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~- 209 (487)
T 3oja_A 167 ----------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE- 209 (487)
T ss_dssp ----------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-
T ss_pred ----------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-
Confidence 02355566666666654422 22356666666666666654333
Q ss_pred ccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCc-ccCCCccccCCCCCccccc-------CCCCCCCCC
Q 042603 714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLS-GKIPDRVAQFSTFEEDSYE-------GNPFLCGLP 783 (874)
Q Consensus 714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~-~~~p~~~~~~~~l~~~~~~-------gNp~~C~~~ 783 (874)
|..+++|+.|||++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.+..+... +||+.|.++
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 6666666666666666664 4555666666666666666665 4444444444444444443 788888654
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.9e-27 Score=252.03 Aligned_cols=249 Identities=19% Similarity=0.252 Sum_probs=183.2
Q ss_pred ccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcc-cccCCcccc-------CCCCCCEEECcCCcCcccCCCC
Q 042603 445 LSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNL-EGPIPNEFC-------QLDCLKVLDLSNNSIFGTLPSC 516 (874)
Q Consensus 445 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~ 516 (874)
+...++|+.+++++|.+ .+|..+... ++.|++++|.+ ...+|..+. ++++|++|++++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34456677777777777 556655543 77777777777 334555544 6778888888888888777765
Q ss_pred C---CCCcccEEEeeCcccCccchhhhhcC-----CCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCccc--CCc
Q 042603 517 L---SLGSIEQVHLSKNKIEGQLESIIHYY-----PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE--IPV 586 (874)
Q Consensus 517 ~---~~~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~ 586 (874)
+ .+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 3 377888888888888877 6666665 8888888888888877778888888888888888887654 233
Q ss_pred cc--cCCCCCCEEEccCCcCCC--CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccc
Q 042603 587 QL--CQLKEVRLIDLSHNNLSG--HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSY 662 (874)
Q Consensus 587 ~~--~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (874)
.+ ..+++|+.|++++|++++ .++..+..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~------------------------------------------------ 225 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAA------------------------------------------------ 225 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH------------------------------------------------
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHh------------------------------------------------
Confidence 33 778888888888888862 11111110
Q ss_pred ccccccccCcceEEcCCCcccccCC-ccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcC
Q 042603 663 YYRGRILTSMSGIDLSCNKLTGEIP-TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL 741 (874)
Q Consensus 663 ~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 741 (874)
.+++|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|+|++. |. +..+
T Consensus 226 -----~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l 295 (312)
T 1wwl_A 226 -----ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL 295 (312)
T ss_dssp -----TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred -----cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence 13578888888888887765 45667788888888888888 6676665 7888888888888876 55 8888
Q ss_pred CCCCeEEccCCCCcc
Q 042603 742 NTLAVFRVAYNNLSG 756 (874)
Q Consensus 742 ~~L~~l~ls~N~l~~ 756 (874)
++|+.|++++|++++
T Consensus 296 ~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEEEEECTTCTTTC
T ss_pred CCCCEEeccCCCCCC
Confidence 888888888888875
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-27 Score=252.96 Aligned_cols=267 Identities=21% Similarity=0.224 Sum_probs=188.1
Q ss_pred CEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccC
Q 042603 379 KSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 458 (874)
Q Consensus 379 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 458 (874)
+..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------- 72 (317)
T 3o53_A 13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------------- 72 (317)
T ss_dssp EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-------------------
T ss_pred eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-------------------
Confidence 34445555444 3334444444555555555555555444445555555555555555443
Q ss_pred CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchh
Q 042603 459 NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLES 538 (874)
Q Consensus 459 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 538 (874)
..+ +..+++|++|++++|.+++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+.
T Consensus 73 -----~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 73 -----TLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp -----EEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGB
T ss_pred -----chh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccch
Confidence 222 445555555566555555322 2367777777777776655443 46788888888888888888
Q ss_pred hhhcCCCCcEEEccCccCCCCCchhh-cCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccc
Q 042603 539 IIHYYPYLVTLDLSYNRLHGSIPNWI-DKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTAL 617 (874)
Q Consensus 539 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 617 (874)
.+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++. + ....+++|+.|++++|++++ +|+.+..
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--- 212 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS--- 212 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG---
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcc---
Confidence 88888999999999999987777666 4689999999999999865 2 33458999999999999974 4443333
Q ss_pred ccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCC
Q 042603 618 SEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIR 697 (874)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 697 (874)
+++|+.|++++|+++ .+|..+..+++|+
T Consensus 213 ---------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 213 ---------------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp ---------------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred ---------------------------------------------------cCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 358999999999999 5788899999999
Q ss_pred eEecCCcccc-cchhhhccCCCCCCEEECC-CCcCcccCChh
Q 042603 698 ALNLSHNNLT-GTIPTTFSNLKQIESLDLS-YNLLHGKIPPQ 737 (874)
Q Consensus 698 ~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs-~N~l~~~~p~~ 737 (874)
.|+|++|.++ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 9999999999 8899999999999999999 45566665543
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.3e-27 Score=251.40 Aligned_cols=249 Identities=22% Similarity=0.266 Sum_probs=194.7
Q ss_pred cCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcC-CCCCchhhh-------ccccCCeeecCCCcccccCCccc
Q 042603 422 FNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL-SGKIPRWLG-------SLLALQDIIMPNNNLEGPIPNEF 493 (874)
Q Consensus 422 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~ 493 (874)
...++|+.+++++|.+ .+|..+... ++.|++++|.+ ...+|..+. ++++|++|++++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3456777788888877 556655544 77788888877 345565554 67888888888888888777775
Q ss_pred --cCCCCCCEEECcCCcCcccCCCCCC-C-----CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCC--Cchh
Q 042603 494 --CQLDCLKVLDLSNNSIFGTLPSCLS-L-----GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGS--IPNW 563 (874)
Q Consensus 494 --~~l~~L~~L~L~~n~l~~~~~~~~~-~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~ 563 (874)
..+++|++|++++|++++. |..+. + ++|++|++++|++++..+..+..+++|++|++++|++.+. .|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7888899999999988876 54433 3 7899999999999998888899999999999999998764 2334
Q ss_pred h--cCCCCCcEEEccCccCccc---CCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcc
Q 042603 564 I--DKLPQLSYILLANNYIEGE---IPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALS 638 (874)
Q Consensus 564 ~--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (874)
+ +.+++|++|++++|++++. ....+..+++|+.|++++|++++..|.....
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------ 250 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD------------------------ 250 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC------------------------
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh------------------------
Confidence 4 7889999999999999832 2234567899999999999998655421100
Q ss_pred cCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCC
Q 042603 639 YFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK 718 (874)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 718 (874)
.+++|+.|++++|+++ .+|..+. ++|++|||++|+|++. |. +..++
T Consensus 251 -----------------------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 251 -----------------------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp -----------------------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred -----------------------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 1358999999999999 7888777 8999999999999977 65 89999
Q ss_pred CCCEEECCCCcCccc
Q 042603 719 QIESLDLSYNLLHGK 733 (874)
Q Consensus 719 ~L~~LdLs~N~l~~~ 733 (874)
+|++|+|++|++++.
T Consensus 297 ~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 297 QVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEEECTTCTTTCC
T ss_pred CCCEEeccCCCCCCC
Confidence 999999999999863
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9.4e-25 Score=249.84 Aligned_cols=268 Identities=22% Similarity=0.292 Sum_probs=157.5
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 432 (874)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++... .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5778888888877 5565554 67778888887777 5554 25666666666666654222 4455666666
Q ss_pred cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512 (874)
Q Consensus 433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 512 (874)
++|++++. |. .+++|+.|++++|+++ + +|.. +++|++|++++|++++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~------------------------~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLT------------------------S-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCS------------------------C-CCCC---CTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCC------------------------c-CCCC---CCCCCEEECcCCcCCC-
Confidence 66555532 22 2344444444444444 2 2221 2455555555555543
Q ss_pred CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC
Q 042603 513 LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK 592 (874)
Q Consensus 513 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 592 (874)
+|. .+++|+.|++++|+++++. ..+++|+.|++++|++++ +|. .+++|+.|++++|.++. +|. .++
T Consensus 156 l~~--~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~ 221 (622)
T 3g06_A 156 LPA--LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS 221 (622)
T ss_dssp CCC--CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT
T ss_pred cCC--ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC
Confidence 222 1245556666666655543 334666666666666664 332 23566667777776663 332 235
Q ss_pred CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCc
Q 042603 593 EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSM 672 (874)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 672 (874)
+|+.|++++|++++ +|.. +++|
T Consensus 222 ~L~~L~Ls~N~L~~-lp~~---------------------------------------------------------l~~L 243 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LPVL---------------------------------------------------------PSEL 243 (622)
T ss_dssp TCCEEECCSSCCSC-CCCC---------------------------------------------------------CTTC
T ss_pred CCCEEEccCCccCc-CCCC---------------------------------------------------------CCcC
Confidence 67777777776653 3310 2366
Q ss_pred ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC
Q 042603 673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN 742 (874)
Q Consensus 673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 742 (874)
+.|++++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus 244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 67777777776 3444 4567777777777777 5566677777777777777777777776666554
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=249.17 Aligned_cols=268 Identities=21% Similarity=0.257 Sum_probs=211.6
Q ss_pred CCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecC
Q 042603 402 SLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMP 481 (874)
Q Consensus 402 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 481 (874)
.++.|++++|.++. +|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 46677777777763 344333 67777777777776 3443 45778888888888774 444 56788888888
Q ss_pred CCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCc
Q 042603 482 NNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIP 561 (874)
Q Consensus 482 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 561 (874)
+|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|+++++.. .+++|+.|++++|.+++ +|
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~--l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC--CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc
Confidence 8888754 33 56889999999999985 4443 4799999999999997643 35789999999999995 55
Q ss_pred hhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCC
Q 042603 562 NWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFP 641 (874)
Q Consensus 562 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (874)
..+++|+.|++++|++++ +|. .+++|+.|++++|.++ .+|..
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~------------------------------ 219 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL------------------------------ 219 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC------------------------------
T ss_pred ---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC------------------------------
Confidence 557899999999999985 443 3578999999999987 33321
Q ss_pred CCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCC
Q 042603 642 PNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 721 (874)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 721 (874)
+++|+.|++++|++++ +| ..+++|+.|+|++|+|++ +|. .+++|+
T Consensus 220 ---------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~ 264 (622)
T 3g06_A 220 ---------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLL 264 (622)
T ss_dssp ---------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred ---------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCc
Confidence 2488999999999995 66 456899999999999995 554 678999
Q ss_pred EEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCccccCC
Q 042603 722 SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS 766 (874)
Q Consensus 722 ~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 766 (874)
.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999999 7799999999999999999999999887665544
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.1e-27 Score=279.34 Aligned_cols=190 Identities=12% Similarity=0.100 Sum_probs=99.8
Q ss_pred CEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEE
Q 042603 8 EELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRIL 87 (874)
Q Consensus 8 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L 87 (874)
+.++++++.. ......+.++++|++|++++|.....+.... .. . + .....++..+...+++|++|
T Consensus 46 ~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~-~~--------~-~---~~~~~~l~~l~~~~~~L~~L 110 (594)
T 2p1m_B 46 RKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVP-DG--------W-G---GYVYPWIEAMSSSYTWLEEI 110 (594)
T ss_dssp CEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSC-TT--------S-C---CBCHHHHHHHHHHCTTCCEE
T ss_pred eEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhccccc-cc--------c-c---chhhHHHHHHHHhCCCCCeE
Confidence 3456655543 1223456677888888888775332221000 00 0 0 00112233445566777777
Q ss_pred EccccCCCCCcccccccc-CCCCCcEEEcCCC-CCCCc-chhcccCCCCCCEEEccCCcCCCCCccccc----CCCCCCE
Q 042603 88 SLSYSRLNKNTILDQGLC-ELVHLQELYIRDN-DLRDS-LLWCLANMTSLQVLNVASNQLTGNFPPGFC----ELVLLRE 160 (874)
Q Consensus 88 ~Ls~n~~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~ 160 (874)
+++++.++... ...+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++
T Consensus 111 ~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 111 RLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred EeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 77776655421 12332 4667777777766 33322 233334677777777777766554433332 4567777
Q ss_pred EEccCCc--CCC-CccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccc
Q 042603 161 LYIDNND--LRG-SLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215 (874)
Q Consensus 161 L~Ls~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 215 (874)
|++++|. +.. .++..+.++++|++|++++|...+.++. .+..+++|++|+++.+
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGY 245 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBC
T ss_pred EEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccc
Confidence 7777775 211 1112234457777777777632222443 5666777777776544
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.6e-26 Score=256.94 Aligned_cols=237 Identities=21% Similarity=0.168 Sum_probs=192.1
Q ss_pred ccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEE
Q 042603 447 KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVH 526 (874)
Q Consensus 447 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 526 (874)
.+++|+.|++++|.+++..|..|+.+++|+.|++++|.+++..| +..+++|++|++++|.+++..+. ++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 34467778888877777777777788888888888888776554 77788888888888888754432 6788888
Q ss_pred eeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCcccc-CCCCCCEEEccCCcCC
Q 042603 527 LSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC-QLKEVRLIDLSHNNLS 605 (874)
Q Consensus 527 l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~Ls~N~l~ 605 (874)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888887664 357889999999999988888888899999999999999988888776 7899999999999987
Q ss_pred CCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc
Q 042603 606 GHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE 685 (874)
Q Consensus 606 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 685 (874)
+. |.. ..+++|+.|+|++|.+++.
T Consensus 183 ~~-~~~-------------------------------------------------------~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 183 DV-KGQ-------------------------------------------------------VVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp EE-ECC-------------------------------------------------------CCCTTCCEEECCSSCCCEE
T ss_pred cc-ccc-------------------------------------------------------ccCCCCCEEECCCCCCCCC
Confidence 43 110 0145899999999999965
Q ss_pred CCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCc-ccCChhhhcCCCCCeEEcc
Q 042603 686 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 686 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~~l~ls 750 (874)
. ..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 207 ~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 G-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp C-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred C-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4 459999999999999999996 6778999999999999999998 7778888888888888886
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.8e-28 Score=280.18 Aligned_cols=383 Identities=15% Similarity=0.104 Sum_probs=175.2
Q ss_pred CCCCCCEEEccCCcccccccCCcc-CCCcccEEEccCC-cCCccCChhhhcCCCCCcEEEccCCcCCcccchhcc----C
Q 042603 301 NNTDLKTLLLANNSLFGSFRMPIH-CLQKLATLDVSNN-FFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFA----D 374 (874)
Q Consensus 301 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~----~ 374 (874)
.+++|++|++++|.+.+.....+. .+++|++|++++| .+.......+...+++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666655544333332 3556666666665 332111122222355666666666665543333222 4
Q ss_pred CCCcCEEEcccCc--CCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCC
Q 042603 375 MKMLKSLDISYNQ--LTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLG 452 (874)
Q Consensus 375 l~~L~~L~l~~n~--i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 452 (874)
+++|++|++++|. ++......+...+++|++|++++|.-.+.++..+..+++|++|++..+...
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-------------- 248 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-------------- 248 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC--------------
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc--------------
Confidence 4566666666654 211111122223555666666555211123334444555555554433210
Q ss_pred eEEccCCcCCCCCchhhhccccCCee-ecCCCcccccCCccccCCCCCCEEECcCCcCcccCCC--CCCCCcccEEEeeC
Q 042603 453 GLYLSDNHLSGKIPRWLGSLLALQDI-IMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPS--CLSLGSIEQVHLSK 529 (874)
Q Consensus 453 ~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~L~~L~l~~ 529 (874)
+..+.+. .++..+.++++|+.+ .+.+... +.++..+..+++|++|++++|.+.+.... ...+++|++|++++
T Consensus 249 ---~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 249 ---VRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp ---CCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred ---cchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 1111111 112234444444444 2222111 12222233345555555555554322111 11245555555555
Q ss_pred cccCcc-chhhhhcCCCCcEEEccC---------ccCCCCCchhhc-CCCCCcEEEccCccCcccCCcccc-CCCCCCEE
Q 042603 530 NKIEGQ-LESIIHYYPYLVTLDLSY---------NRLHGSIPNWID-KLPQLSYILLANNYIEGEIPVQLC-QLKEVRLI 597 (874)
Q Consensus 530 n~i~~~-~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L 597 (874)
| ++.. .+.....+++|++|++++ +.+++.....+. .+++|+.|.+..|.+++..+..+. .+++|+.|
T Consensus 324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 5 2211 222233456666665522 333322222222 356666666666665544433333 35666666
Q ss_pred Ecc--C----CcCCCCCCc--hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccc
Q 042603 598 DLS--H----NNLSGHIPP--CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRIL 669 (874)
Q Consensus 598 ~Ls--~----N~l~~~~p~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (874)
+++ + |.++. .|. .+.... ..+
T Consensus 403 ~L~~~~~~~~~~l~~-~~~~~~~~~l~--------------------------------------------------~~~ 431 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTL-EPLDIGFGAIV--------------------------------------------------EHC 431 (594)
T ss_dssp EEEESSTTCCCTTTC-CCTHHHHHHHH--------------------------------------------------HHC
T ss_pred EeecccCCCcccccC-CchhhHHHHHH--------------------------------------------------hhC
Confidence 666 2 33331 111 000000 013
Q ss_pred cCcceEEcCCCcccccCCccccc-cccCCeEecCCcccccchhhhc-cCCCCCCEEECCCCcCcccCCh-hhhcCCCCCe
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGY-LTRIRALNLSHNNLTGTIPTTF-SNLKQIESLDLSYNLLHGKIPP-QLIVLNTLAV 746 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~LdLs~N~l~~~~p~-~l~~l~~L~~ 746 (874)
++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|+.
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 4566666655 555444444444 5667777777776665554444 5566677777777766544333 2234566777
Q ss_pred EEccCCCCc
Q 042603 747 FRVAYNNLS 755 (874)
Q Consensus 747 l~ls~N~l~ 755 (874)
|++++|+++
T Consensus 511 L~l~~~~~~ 519 (594)
T 2p1m_B 511 LWMSSCSVS 519 (594)
T ss_dssp EEEESSCCB
T ss_pred EeeeCCCCC
Confidence 777776663
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=8e-25 Score=227.79 Aligned_cols=209 Identities=22% Similarity=0.239 Sum_probs=142.4
Q ss_pred CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599 (874)
Q Consensus 520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 599 (874)
+++++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|++|++++|++.+..+..+.++++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34566666666666555556666666666666666666555556666666666666666666666666666677777777
Q ss_pred cCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC
Q 042603 600 SHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC 679 (874)
Q Consensus 600 s~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 679 (874)
++|++++..+..+.. +++|+.|++++
T Consensus 108 ~~n~l~~~~~~~~~~------------------------------------------------------l~~L~~L~l~~ 133 (276)
T 2z62_A 108 VETNLASLENFPIGH------------------------------------------------------LKTLKELNVAH 133 (276)
T ss_dssp TTSCCCCSTTCCCTT------------------------------------------------------CTTCCEEECCS
T ss_pred CCCCccccCchhccc------------------------------------------------------CCCCCEEECcC
Confidence 777665332222211 34677777777
Q ss_pred Cccccc-CCccccccccCCeEecCCcccccchhhhccCCCCCC----EEECCCCcCcccCChhhhcCCCCCeEEccCCCC
Q 042603 680 NKLTGE-IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE----SLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNL 754 (874)
Q Consensus 680 N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l 754 (874)
|.+++. +|..++.+++|++|+|++|++++..+..|..+++|+ +|++++|++++..+..+.. .+|+.|++++|++
T Consensus 134 n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l 212 (276)
T 2z62_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQL 212 (276)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCC
T ss_pred CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCce
Confidence 777653 477777888888888888888877777777666666 7888888887665555443 3688888888888
Q ss_pred cccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 755 SGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 755 ~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
++.++..+..+++++.+++.+||+.|+|+
T Consensus 213 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 213 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCHhHhcccccccEEEccCCcccccCC
Confidence 87777666778888888888888888664
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.1e-24 Score=220.63 Aligned_cols=206 Identities=20% Similarity=0.246 Sum_probs=124.2
Q ss_pred CCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603 498 CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577 (874)
Q Consensus 498 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 577 (874)
..+.+++++++++. +|..+. +++++|++++|+++++.+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35667777776663 333222 4555666666655555555555555555555555555544444444555555555555
Q ss_pred ccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEe
Q 042603 578 NYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTT 657 (874)
Q Consensus 578 n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (874)
|++.+..+..+..++
T Consensus 95 n~l~~~~~~~~~~l~----------------------------------------------------------------- 109 (270)
T 2o6q_A 95 NKLQALPIGVFDQLV----------------------------------------------------------------- 109 (270)
T ss_dssp SCCCCCCTTTTTTCS-----------------------------------------------------------------
T ss_pred CcCCcCCHhHccccc-----------------------------------------------------------------
Confidence 555443333344444
Q ss_pred cCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChh
Q 042603 658 KNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 737 (874)
Q Consensus 658 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 737 (874)
+|+.|++++|.+++..|..|+.+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..
T Consensus 110 -------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 110 -------------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp -------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -------------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence 4555555555555555555666667777777777777665566667777777777777777666666
Q ss_pred hhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 738 LIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 738 l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
+..+++|+.|++++|++++.++..+..+++++.+++.+|||.|+|+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6667777777777777776666556666777777777777777553
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.8e-24 Score=219.55 Aligned_cols=208 Identities=22% Similarity=0.262 Sum_probs=141.7
Q ss_pred CCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEcc
Q 042603 498 CLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576 (874)
Q Consensus 498 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 576 (874)
+|++|++++|++++..+..+ .+++|++|++++|+++++.+..|..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45566666666555444332 35566666666666666666666666777777777777766666667777777777777
Q ss_pred CccCcccCCccccCCCCCCEEEccCCcCCC-CCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSG-HIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF 655 (874)
Q Consensus 577 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (874)
+|.+.+..+..+..+++|+.|++++|.+++ .+|..+..
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 777776666567777777777777777764 24554443
Q ss_pred EecCcccccccccccCcceEEcCCCcccccCCccccccccCC----eEecCCcccccchhhhccCCCCCCEEECCCCcCc
Q 042603 656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIR----ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 731 (874)
Q Consensus 656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 731 (874)
+++|+.|++++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|+.|++++|+++
T Consensus 148 -------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 148 -------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp -------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred -------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence 23677777777777766666777777766 7888888888666655544 37888888888888
Q ss_pred ccCChhhhcCCCCCeEEccCCCCcccCCC
Q 042603 732 GKIPPQLIVLNTLAVFRVAYNNLSGKIPD 760 (874)
Q Consensus 732 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 760 (874)
+..+..+..+++|+.|++++|++.+..|.
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ecCHhHhcccccccEEEccCCcccccCCc
Confidence 77666677888888888888888876653
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5e-24 Score=222.35 Aligned_cols=208 Identities=24% Similarity=0.264 Sum_probs=138.8
Q ss_pred ccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcE
Q 042603 493 FCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSY 572 (874)
Q Consensus 493 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 572 (874)
+..+++++.+++++|.++. +|..+. +.++.|++++|++++..+..|..+++|++|++++|.+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------- 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-------------- 69 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--------------
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--------------
Confidence 4456667777777777653 332221 455555555555555555555555555555555555543
Q ss_pred EEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccce
Q 042603 573 ILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEET 652 (874)
Q Consensus 573 L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (874)
..+. ..+++|+.|++++|+++ .+|..+..
T Consensus 70 ----------~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~-------------------------------------- 98 (290)
T 1p9a_G 70 ----------LQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT-------------------------------------- 98 (290)
T ss_dssp ----------EECC--SCCTTCCEEECCSSCCS-SCCCCTTT--------------------------------------
T ss_pred ----------ccCC--CCCCcCCEEECCCCcCC-cCchhhcc--------------------------------------
Confidence 2221 44555666666666554 33332211
Q ss_pred EEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603 653 VQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 732 (874)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 732 (874)
+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++
T Consensus 99 ----------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 99 ----------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ----------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ----------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 2466777777777776666778888888888888888888777778888888888888888887
Q ss_pred cCChhhhcCCCCCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 733 KIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 733 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
..+..+..+++|+.|++++|+++. +|..+....+++.+++.||||.|+|.+
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCcc
Confidence 666677888888888888888884 455556677888888999999996643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.4e-24 Score=221.28 Aligned_cols=207 Identities=22% Similarity=0.263 Sum_probs=158.2
Q ss_pred cCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEE
Q 042603 494 CQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYI 573 (874)
Q Consensus 494 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 573 (874)
..+++|+.|++++|.+. .++....+++|++|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34555666666666654 333444466666666666666654 256777888888888888887777777888888888
Q ss_pred EccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceE
Q 042603 574 LLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETV 653 (874)
Q Consensus 574 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (874)
++++|++++..+..+..+++|+.|++++|++++..|..+..
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------- 155 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------------------------------- 155 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------------------------------
Confidence 88888888777777788888888888888887443333322
Q ss_pred EEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCccc
Q 042603 654 QFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 733 (874)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 733 (874)
+++|+.|++++|++++..+..++.+++|+.|+|++|++++..|..|+.+++|+.|++++|++.+.
T Consensus 156 ---------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 156 ---------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ---------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 34788899999999887788889999999999999999998888899999999999999999865
Q ss_pred CChhhhcCCCCCeEEccCCCCcccCCCcccc
Q 042603 734 IPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQ 764 (874)
Q Consensus 734 ~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 764 (874)
.| .|+.++++.|.++|.+|..++.
T Consensus 221 ~~-------~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 221 CP-------GIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TT-------TTHHHHHHHHHTGGGBBCTTSC
T ss_pred Cc-------HHHHHHHHHHhCCCcccCcccc
Confidence 44 5888899999999999986543
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=210.69 Aligned_cols=129 Identities=22% Similarity=0.251 Sum_probs=112.8
Q ss_pred cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552 (874)
Q Consensus 474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls 552 (874)
..+.++++++.++. +|..+. +++++|++++|++.+..+..+ .+++|++|++++|+++.+.+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 47889999999984 565543 689999999999997766555 48999999999999999999999999999999999
Q ss_pred CccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603 553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 553 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (874)
+|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 99999887888899999999999999999887777888888888888887775
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.2e-22 Score=207.78 Aligned_cols=202 Identities=24% Similarity=0.251 Sum_probs=148.4
Q ss_pred hhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCc
Q 042603 469 LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLV 547 (874)
Q Consensus 469 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 547 (874)
+++++++++++++++.++. +|..+. +.++.|++++|++++..+..+. +++|++|++++|.++++.+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 6678899999999999985 555443 6899999999999987766554 89999999999999987654 7889999
Q ss_pred EEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCC
Q 042603 548 TLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAP 627 (874)
Q Consensus 548 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~ 627 (874)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------- 146 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------------- 146 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------------
Confidence 9999999998 67777888888999999999888777777888888888888888776322221111
Q ss_pred CccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccc
Q 042603 628 TWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 707 (874)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 707 (874)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 147 -----------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 147 -----------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp -----------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 235666666666666444445555666666666666666
Q ss_pred cchhhhccCCCCCCEEECCCCcCc
Q 042603 708 GTIPTTFSNLKQIESLDLSYNLLH 731 (874)
Q Consensus 708 ~~~p~~~~~l~~L~~LdLs~N~l~ 731 (874)
.+|..+..+.+|+.|+|++|++.
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBC
T ss_pred -ccChhhcccccCCeEEeCCCCcc
Confidence 44555555556666666666654
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1e-22 Score=210.97 Aligned_cols=210 Identities=21% Similarity=0.221 Sum_probs=150.2
Q ss_pred hhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcE
Q 042603 469 LGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVT 548 (874)
Q Consensus 469 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 548 (874)
...+++|+.|++++|.+... ..+..+++|++|++++|++.+ ++....+++|++|++++|++++..+..|..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 33455555555555555421 235556666666666666653 233344666777777777777666667777778888
Q ss_pred EEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCC
Q 042603 549 LDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPT 628 (874)
Q Consensus 549 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~ 628 (874)
|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------- 179 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------------- 179 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------------
Confidence 888888887766777777888888888888888776767778888888888888887443333222
Q ss_pred ccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCccccc
Q 042603 629 WDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG 708 (874)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 708 (874)
+++|+.|++++|++++..|..++.+++|+.|+|++|.+++
T Consensus 180 ----------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 180 ----------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 3478888888888888888888899999999999998885
Q ss_pred chhhhccCCCCCCEEECCCCcCcccCChhhhcCC
Q 042603 709 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN 742 (874)
Q Consensus 709 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 742 (874)
. +++|+.|+++.|.++|.+|..++.+.
T Consensus 220 ~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 220 T-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp C-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred c-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 4 55788999999999999998876654
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.8e-23 Score=226.43 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=38.2
Q ss_pred CcceEEcCCCcccccCC----ccccccccCCeEecCCcccccc-------hhhhccCCCCCCEEECCCCcCcccCChh
Q 042603 671 SMSGIDLSCNKLTGEIP----TQIGYLTRIRALNLSHNNLTGT-------IPTTFSNLKQIESLDLSYNLLHGKIPPQ 737 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 737 (874)
+|+.|||++|.+++..+ ..+..+++|++|+|++|.+++. ++..+..+++|+.||+++|++.+..+..
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 56666666666654433 2234556666666666663332 2334556666677777777766554443
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.8e-23 Score=226.51 Aligned_cols=256 Identities=17% Similarity=0.175 Sum_probs=170.6
Q ss_pred EEccCCcCCCCCchhhhccccCCeeecCCCcccccCC----ccccCCC-CCCEEECcCCcCcccCCCCCC------CCcc
Q 042603 454 LYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIP----NEFCQLD-CLKVLDLSNNSIFGTLPSCLS------LGSI 522 (874)
Q Consensus 454 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~------~~~L 522 (874)
++++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|++.+..+..+. .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555555555556666666666655444 4555555 566666666666544433222 1567
Q ss_pred cEEEeeCcccCccchhh----hhcC-CCCcEEEccCccCCCCCchhhcC-----CCCCcEEEccCccCcccCC----ccc
Q 042603 523 EQVHLSKNKIEGQLESI----IHYY-PYLVTLDLSYNRLHGSIPNWIDK-----LPQLSYILLANNYIEGEIP----VQL 588 (874)
Q Consensus 523 ~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~~~~----~~~ 588 (874)
++|++++|++++..+.. +..+ ++|++|++++|++++..+..+.. .++|++|++++|.+.+..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777776665553 3333 77888888888887666554433 3588888888888875433 334
Q ss_pred cCCC-CCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccc
Q 042603 589 CQLK-EVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGR 667 (874)
Q Consensus 589 ~~l~-~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (874)
..++ +|+.|++++|++++..+..+...- .
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------------------------~ 192 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------------------------A 192 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------------------------H
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------------------------H
Confidence 4554 888999999988766655544321 0
Q ss_pred cc-cCcceEEcCCCccccc----CCccccc-cccCCeEecCCcccccchh----hhccCCCCCCEEECCCCcCcccCC--
Q 042603 668 IL-TSMSGIDLSCNKLTGE----IPTQIGY-LTRIRALNLSHNNLTGTIP----TTFSNLKQIESLDLSYNLLHGKIP-- 735 (874)
Q Consensus 668 ~~-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~LdLs~N~l~~~~p-- 735 (874)
.. ++|+.|||++|.+++. ++..+.. .++|++|||++|.+++..+ ..+..+++|++|+|++|.+.+..+
T Consensus 193 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~ 272 (362)
T 3goz_A 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH
T ss_pred hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH
Confidence 01 3788999999998863 4555655 3599999999999998655 445778999999999999654433
Q ss_pred -----hhhhcCCCCCeEEccCCCCcccCC
Q 042603 736 -----PQLIVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 736 -----~~l~~l~~L~~l~ls~N~l~~~~p 759 (874)
..+..+++|+.|++++|++....+
T Consensus 273 ~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 273 CKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 356788889999999999886644
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.9e-23 Score=228.82 Aligned_cols=239 Identities=18% Similarity=0.241 Sum_probs=156.3
Q ss_pred hhhhccccCCeeecCCCcccccCC----ccccCCCCCCEEECcCCc---CcccCCCC--------CCCCcccEEEeeCcc
Q 042603 467 RWLGSLLALQDIIMPNNNLEGPIP----NEFCQLDCLKVLDLSNNS---IFGTLPSC--------LSLGSIEQVHLSKNK 531 (874)
Q Consensus 467 ~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~--------~~~~~L~~L~l~~n~ 531 (874)
..+..+++|+.|++++|.+.+..+ ..+..+++|++|+|++|. +.+.+|.. ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 334444444555555544443322 224445555555555542 22233321 135566666666666
Q ss_pred cCc----cchhhhhcCCCCcEEEccCccCCCCCchhhc----CC---------CCCcEEEccCccCc-ccCC---ccccC
Q 042603 532 IEG----QLESIIHYYPYLVTLDLSYNRLHGSIPNWID----KL---------PQLSYILLANNYIE-GEIP---VQLCQ 590 (874)
Q Consensus 532 i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~~~-~~~~---~~~~~ 590 (874)
+++ ..+..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|++. +..+ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 665 3455667777777888877777644333333 33 77888888888876 3333 35667
Q ss_pred CCCCCEEEccCCcCCCC-----CCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccc
Q 042603 591 LKEVRLIDLSHNNLSGH-----IPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYR 665 (874)
Q Consensus 591 l~~L~~L~Ls~N~l~~~-----~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (874)
+++|+.|++++|+++.. +|..+..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------------------------------------------------- 214 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------------------------------------------------- 214 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGG---------------------------------------------------
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhc---------------------------------------------------
Confidence 77888888888877521 1111111
Q ss_pred cccccCcceEEcCCCccc----ccCCccccccccCCeEecCCcccccc----hhhhccC--CCCCCEEECCCCcCcc---
Q 042603 666 GRILTSMSGIDLSCNKLT----GEIPTQIGYLTRIRALNLSHNNLTGT----IPTTFSN--LKQIESLDLSYNLLHG--- 732 (874)
Q Consensus 666 ~~~~~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~LdLs~N~l~~--- 732 (874)
+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+.. +++|++|+|++|++++
T Consensus 215 ---~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 215 ---CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp ---CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred ---CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 357888888888885 56788888889999999999999876 5677743 8999999999999988
Q ss_pred -cCChhh-hcCCCCCeEEccCCCCcccCC
Q 042603 733 -KIPPQL-IVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 733 -~~p~~l-~~l~~L~~l~ls~N~l~~~~p 759 (874)
.+|..+ .++++|+.|++++|++++..|
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477777 668999999999999987764
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.1e-21 Score=198.46 Aligned_cols=183 Identities=20% Similarity=0.198 Sum_probs=145.7
Q ss_pred CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599 (874)
Q Consensus 520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 599 (874)
...++++++++.++.++.... ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 456788888888887654332 57888899999888888888888888999999988888888878888888888888
Q ss_pred cCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC
Q 042603 600 SHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC 679 (874)
Q Consensus 600 s~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 679 (874)
++|++++..|..+.. +++|+.|+|++
T Consensus 91 ~~n~l~~~~~~~~~~------------------------------------------------------l~~L~~L~L~~ 116 (251)
T 3m19_A 91 ANNQLASLPLGVFDH------------------------------------------------------LTQLDKLYLGG 116 (251)
T ss_dssp TTSCCCCCCTTTTTT------------------------------------------------------CTTCCEEECCS
T ss_pred CCCcccccChhHhcc------------------------------------------------------cCCCCEEEcCC
Confidence 888887443333322 34788888888
Q ss_pred CcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCC
Q 042603 680 NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 680 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 759 (874)
|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|||++|++++..|..+..+++|+.|++++|++.+...
T Consensus 117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 88887777777888888888888888887777788888888888888888887777788888888888888888877643
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=9.2e-22 Score=199.73 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=112.8
Q ss_pred cccEEEeeCcccCccchhhhhcCCCCcEEEccCcc-CCCCCchhhcCCCCCcEEEccC-ccCcccCCccccCCCCCCEEE
Q 042603 521 SIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNR-LHGSIPNWIDKLPQLSYILLAN-NYIEGEIPVQLCQLKEVRLID 598 (874)
Q Consensus 521 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 598 (874)
++++|++++|+++++.+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555555555555566666666666664 5544444556666666666665 666655555566666666666
Q ss_pred ccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcc---eE
Q 042603 599 LSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMS---GI 675 (874)
Q Consensus 599 Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L 675 (874)
+++|++++ +|. +.. +++|+ .|
T Consensus 112 l~~n~l~~-lp~-~~~------------------------------------------------------l~~L~~L~~L 135 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTK------------------------------------------------------VYSTDIFFIL 135 (239)
T ss_dssp EEEECCCS-CCC-CTT------------------------------------------------------CCBCCSEEEE
T ss_pred CCCCCCcc-ccc-ccc------------------------------------------------------ccccccccEE
Confidence 66666553 332 211 11333 66
Q ss_pred EcCCC-cccccCCccccccccCC-eEecCCcccccchhhhccCCCCCCEEECCCCc-CcccCChhhhcC-CCCCeEEccC
Q 042603 676 DLSCN-KLTGEIPTQIGYLTRIR-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-LHGKIPPQLIVL-NTLAVFRVAY 751 (874)
Q Consensus 676 ~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l-~~L~~l~ls~ 751 (874)
++++| .+++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 66666 66655555566666666 6666666666433344444 666666666664 665555666666 6666666666
Q ss_pred CCCcccCCCccccCCCCCcccccCC
Q 042603 752 NNLSGKIPDRVAQFSTFEEDSYEGN 776 (874)
Q Consensus 752 N~l~~~~p~~~~~~~~l~~~~~~gN 776 (874)
|++++.++. .++.++.+.+.++
T Consensus 215 N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 215 TSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCCT---TCTTCSEEECTTC
T ss_pred CccccCChh---HhccCceeeccCc
Confidence 666654333 3445555555443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.2e-22 Score=212.94 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=54.5
Q ss_pred CCCCEEECcCCcCcccCCCCC---CCCcccEEEeeCcccCccch----hhhhcCCCCcEEEccCccCCCCCchhhcCCCC
Q 042603 497 DCLKVLDLSNNSIFGTLPSCL---SLGSIEQVHLSKNKIEGQLE----SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQ 569 (874)
Q Consensus 497 ~~L~~L~L~~n~l~~~~~~~~---~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 569 (874)
++|++|++++|++.+..|..+ .+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666655555442 25555555555555554322 22334555555555555555544455555555
Q ss_pred CcEEEccCccCccc--C--CccccCCCCCCEEEccCCcCC
Q 042603 570 LSYILLANNYIEGE--I--PVQLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 570 L~~L~l~~n~~~~~--~--~~~~~~l~~L~~L~Ls~N~l~ 605 (874)
|++|++++|++.+. . +..+..+++|+.|++++|+++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 55555555554331 1 112234455555555555543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.4e-22 Score=215.92 Aligned_cols=250 Identities=16% Similarity=0.217 Sum_probs=161.0
Q ss_pred CCeEEccCCcCCCCCchhhhcc--ccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc-CCCCC-CCCcccEEE
Q 042603 451 LGGLYLSDNHLSGKIPRWLGSL--LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT-LPSCL-SLGSIEQVH 526 (874)
Q Consensus 451 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~L~~L~ 526 (874)
++.+++++|.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+ .+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 444555555443 3344444 5566666666666554443 33556666666666665543 33322 256666777
Q ss_pred eeCcccCccchhhhhcCCCCcEEEccCc-cCCCC-CchhhcCCCCCcEEEccCc-cCccc-CCccccCCC-CCCEEEccC
Q 042603 527 LSKNKIEGQLESIIHYYPYLVTLDLSYN-RLHGS-IPNWIDKLPQLSYILLANN-YIEGE-IPVQLCQLK-EVRLIDLSH 601 (874)
Q Consensus 527 l~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~Ls~ 601 (874)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777666666666777777777777777 56542 4555677777777777777 77653 455567777 788888887
Q ss_pred C--cCC-CCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcC
Q 042603 602 N--NLS-GHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLS 678 (874)
Q Consensus 602 N--~l~-~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 678 (874)
| .++ +.+|..+.. +++|+.|+++
T Consensus 205 ~~~~~~~~~l~~~~~~------------------------------------------------------~~~L~~L~l~ 230 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRR------------------------------------------------------CPNLVHLDLS 230 (336)
T ss_dssp CGGGSCHHHHHHHHHH------------------------------------------------------CTTCSEEECT
T ss_pred CcccCCHHHHHHHHhh------------------------------------------------------CCCCCEEeCC
Confidence 7 343 223332222 3478888888
Q ss_pred CCc-ccccCCccccccccCCeEecCCcc-cccchhhhccCCCCCCEEECCCCcCcccCChhhhcC-CCCCeEEccCCCCc
Q 042603 679 CNK-LTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLAVFRVAYNNLS 755 (874)
Q Consensus 679 ~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~ 755 (874)
+|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++.. .+..+ ..+..|++++|+++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCc
Confidence 888 777777788888899999999885 33333336788899999999988 4332 33333 23666778899998
Q ss_pred ccCCCcc
Q 042603 756 GKIPDRV 762 (874)
Q Consensus 756 ~~~p~~~ 762 (874)
+..|..+
T Consensus 307 ~~~~~~~ 313 (336)
T 2ast_B 307 TIARPTI 313 (336)
T ss_dssp CTTCSSC
T ss_pred cccCCcc
Confidence 8888753
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4e-23 Score=226.23 Aligned_cols=188 Identities=20% Similarity=0.226 Sum_probs=131.6
Q ss_pred cCCCCCCEEECcCCcCcc----cCCCCC-CCCcccEEEeeCcccCccchhhh----hcC---------CCCcEEEccCcc
Q 042603 494 CQLDCLKVLDLSNNSIFG----TLPSCL-SLGSIEQVHLSKNKIEGQLESII----HYY---------PYLVTLDLSYNR 555 (874)
Q Consensus 494 ~~l~~L~~L~L~~n~l~~----~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~----~~l---------~~L~~L~Ls~n~ 555 (874)
..+++|++|+|++|++.+ .++..+ .+++|++|++++|.++...+..+ ..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456666666666666654 122222 25666677777776654433333 233 788888888888
Q ss_pred CC-CCCc---hhhcCCCCCcEEEccCccCcc-----cCCccccCCCCCCEEEccCCcCC----CCCCchhhccccccccc
Q 042603 556 LH-GSIP---NWIDKLPQLSYILLANNYIEG-----EIPVQLCQLKEVRLIDLSHNNLS----GHIPPCLVNTALSEGYY 622 (874)
Q Consensus 556 l~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~~~~~~~~~ 622 (874)
++ +.++ ..+..+++|++|++++|++.. ..+..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-------- 242 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-------- 242 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--------
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--------
Confidence 76 3344 356677888888888888762 23446778888888888888875 334443332
Q ss_pred cCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc----CCcccc--ccccC
Q 042603 623 DAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE----IPTQIG--YLTRI 696 (874)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L 696 (874)
+++|+.|+|++|.+++. +|..+. .+++|
T Consensus 243 ----------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 243 ----------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp ----------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred ----------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence 34788888998888865 566663 48999
Q ss_pred CeEecCCccccc----chhhhc-cCCCCCCEEECCCCcCcccCC
Q 042603 697 RALNLSHNNLTG----TIPTTF-SNLKQIESLDLSYNLLHGKIP 735 (874)
Q Consensus 697 ~~L~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~~~~p 735 (874)
+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 277 ~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999999998 478777 678999999999999998774
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6.8e-21 Score=194.71 Aligned_cols=182 Identities=22% Similarity=0.262 Sum_probs=147.4
Q ss_pred CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEcc
Q 042603 497 DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLA 576 (874)
Q Consensus 497 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 576 (874)
...++++++++.+. .+|..+. +.++.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 35678888888887 4444333 578889999999888888888888899999999999888888888888899999999
Q ss_pred CccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEE
Q 042603 577 NNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFT 656 (874)
Q Consensus 577 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (874)
+|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------ 129 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------ 129 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc------------------------------------------
Confidence 99988777778888889999999999887433322222
Q ss_pred ecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccC
Q 042603 657 TKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 734 (874)
Q Consensus 657 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 734 (874)
+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus 130 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 130 ------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp ------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred ------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 347888999999988777778888889999999999998888888888889999999999888653
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.5e-21 Score=194.65 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=118.1
Q ss_pred CCCEEECcCCcCcccCCCCC-CCCcccEEEeeCcc-cCccchhhhhcCCCCcEEEccC-ccCCCCCchhhcCCCCCcEEE
Q 042603 498 CLKVLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNK-IEGQLESIIHYYPYLVTLDLSY-NRLHGSIPNWIDKLPQLSYIL 574 (874)
Q Consensus 498 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 574 (874)
++++|++++|++++..+..+ .+++|++|++++|+ ++++.+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444333 25555555555554 5555555566666666666665 666655555566666666666
Q ss_pred ccCccCcccCCccccCCCCCC---EEEccCC-cCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCcc
Q 042603 575 LANNYIEGEIPVQLCQLKEVR---LIDLSHN-NLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKE 650 (874)
Q Consensus 575 l~~n~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (874)
+++|++++ +|. +..+++|+ .|++++| .+++..+..+..
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------------------------------------ 153 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG------------------------------------ 153 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT------------------------------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc------------------------------------
Confidence 66666664 443 55666665 6666666 555322222221
Q ss_pred ceEEEEecCcccccccccccCcc-eEEcCCCcccccCCccccccccCCeEecCCcc-cccchhhhccCC-CCCCEEECCC
Q 042603 651 ETVQFTTKNMSYYYRGRILTSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNL-KQIESLDLSY 727 (874)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~ 727 (874)
+++|+ .|++++|+++...+..+.. ++|+.|+|++|+ +++..+..|.++ ++|+.||+++
T Consensus 154 ------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 154 ------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 23666 7777777777333333444 778888888884 877767778888 8888888888
Q ss_pred CcCcccCChhhhcCCCCCeEEccCC
Q 042603 728 NLLHGKIPPQLIVLNTLAVFRVAYN 752 (874)
Q Consensus 728 N~l~~~~p~~l~~l~~L~~l~ls~N 752 (874)
|++++..+. .+++|+.|+++++
T Consensus 215 N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 215 TSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCCT---TCTTCSEEECTTC
T ss_pred CccccCChh---HhccCceeeccCc
Confidence 888754333 5667777777765
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.4e-20 Score=198.48 Aligned_cols=192 Identities=18% Similarity=0.311 Sum_probs=108.0
Q ss_pred CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603 496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575 (874)
Q Consensus 496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 575 (874)
+++|+.|++++|.+.. ++....+++|++|++++|++++..+ +..+++|++|++++|++++. + .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 3344444444444432 2333334455555555555554443 55555666666666665532 2 3555666666666
Q ss_pred cCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEE
Q 042603 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQF 655 (874)
Q Consensus 576 ~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (874)
++|++++. + .+..+++|+.|++++|.+++. |. +..
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~----------------------------------------- 149 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAG----------------------------------------- 149 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGG-----------------------------------------
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccC-----------------------------------------
Confidence 66666543 2 255666666666666666532 11 111
Q ss_pred EecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCC
Q 042603 656 TTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 735 (874)
Q Consensus 656 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 735 (874)
+++|+.|++++|++++..+ +..+++|+.|+|++|++++..+ +..+++|++|+|++|++++..|
T Consensus 150 -------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 150 -------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp -------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred -------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence 2366666666666664332 6666777777777777765543 6667777777777777765542
Q ss_pred hhhhcCCCCCeEEccCCCCcc
Q 042603 736 PQLIVLNTLAVFRVAYNNLSG 756 (874)
Q Consensus 736 ~~l~~l~~L~~l~ls~N~l~~ 756 (874)
+..+++|+.|++++|++++
T Consensus 213 --l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 213 --LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GTTCTTCCEEEEEEEEEEC
T ss_pred --ccCCCCCCEEEccCCeeec
Confidence 6667777777777777665
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=201.09 Aligned_cols=225 Identities=17% Similarity=0.166 Sum_probs=152.3
Q ss_pred cccEEEccCCcCCccCChhhh--cCCCCCcEEEccCCcCCcccchhc--cCCCCcCEEEcccCcCCCCch---hHHHhcC
Q 042603 328 KLATLDVSNNFFLGHIPVEIG--TYLPGLMHLNLSRNAFNGSIPSSF--ADMKMLKSLDISYNQLTGAIP---ERMAMGC 400 (874)
Q Consensus 328 ~L~~L~Ls~n~l~~~i~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~---~~~~~~~ 400 (874)
.++.+.+.++.+....-..+. ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ......+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456667766655421111111 113579999999999988888887 888999999999999886544 2222368
Q ss_pred CCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCccc--C--CccccccCCCCeEEccCCcCCCCCch----hhhcc
Q 042603 401 FSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGE--I--PESLSKCYLLGGLYLSDNHLSGKIPR----WLGSL 472 (874)
Q Consensus 401 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l 472 (874)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. ++. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 8899999999999888888888889999999999987642 1 2234577888888888888863 333 24667
Q ss_pred ccCCeeecCCCcccccCCccccCC---CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEE
Q 042603 473 LALQDIIMPNNNLEGPIPNEFCQL---DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTL 549 (874)
Q Consensus 473 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 549 (874)
++|++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|+++++.. +..+++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRAPQ--PDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence 888888888888877766666555 57777777777776 4444332 455666666665555421 3445555555
Q ss_pred EccCccCC
Q 042603 550 DLSYNRLH 557 (874)
Q Consensus 550 ~Ls~n~l~ 557 (874)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 55555554
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.9e-21 Score=208.80 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=200.9
Q ss_pred cCCeeecCCCcccccCCccccCC--CCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCcc-chhhhhcCCCCcEEE
Q 042603 474 ALQDIIMPNNNLEGPIPNEFCQL--DCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQ-LESIIHYYPYLVTLD 550 (874)
Q Consensus 474 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 550 (874)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+..+.+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4789999999876 4556666 899999999999999888888899999999999999876 788899999999999
Q ss_pred ccCccCCCCCchhhcCCCCCcEEEccCc-cCccc-CCccccCCCCCCEEEccCC-cCCCC-CCchhhccccccccccCCC
Q 042603 551 LSYNRLHGSIPNWIDKLPQLSYILLANN-YIEGE-IPVQLCQLKEVRLIDLSHN-NLSGH-IPPCLVNTALSEGYYDAVA 626 (874)
Q Consensus 551 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~~~~~~~~~~~~~ 626 (874)
+++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|+.|++++| .+++. +|..+..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~------------ 192 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH------------ 192 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh------------
Confidence 9999999888889999999999999999 67753 6667889999999999999 88743 2332222
Q ss_pred CCccccCCCCcccCCCCCCCCCccceEEEEecCccccccccccc-CcceEEcCCC--ccc-ccCCccccccccCCeEecC
Q 042603 627 PTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILT-SMSGIDLSCN--KLT-GEIPTQIGYLTRIRALNLS 702 (874)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~Ls 702 (874)
++ +|++|++++| .++ +.+|..+..+++|+.|+++
T Consensus 193 ------------------------------------------l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 193 ------------------------------------------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp ------------------------------------------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred ------------------------------------------cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 45 8999999999 565 4677888899999999999
Q ss_pred Ccc-cccchhhhccCCCCCCEEECCCCc-CcccCChhhhcCCCCCeEEccCCCCcccCCCccccCC-CCCcccccCCCCC
Q 042603 703 HNN-LTGTIPTTFSNLKQIESLDLSYNL-LHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQFS-TFEEDSYEGNPFL 779 (874)
Q Consensus 703 ~N~-l~~~~p~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~l~~~~~~gNp~~ 779 (874)
+|. +++..+..+.++++|++|++++|. +.......+..+++|+.|++++| +. ..++..+. .++.+.+.+|...
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCc
Confidence 999 888888899999999999999995 33332236889999999999999 32 22344443 3667777666543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9.9e-20 Score=191.87 Aligned_cols=192 Identities=20% Similarity=0.339 Sum_probs=160.9
Q ss_pred CCCCCEEecCCCCCCCCchhhhccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCC
Q 042603 4 FTNLEELILVESDLHVSQLLQSIASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMAS 83 (874)
Q Consensus 4 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 83 (874)
+++|++|+++++.+. .+ +.+..+++|++|++++|.+.+.. + +..+++|++|++++|.+..... +..+++
T Consensus 40 l~~L~~L~l~~~~i~--~l-~~~~~l~~L~~L~L~~n~i~~~~-~--~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT--TI-EGVQYLNNLIGLELKDNQITDLA-P--LKNLTKITELELSGNPLKNVSA-----IAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCCC--CC-TTGGGCTTCCEEECCSSCCCCCG-G--GTTCCSCCEEECCSCCCSCCGG-----GTTCTT
T ss_pred cCCcCEEEeeCCCcc--Cc-hhhhccCCCCEEEccCCcCCCCh-h--HccCCCCCEEEccCCcCCCchh-----hcCCCC
Confidence 578999999999873 23 46888999999999999887543 2 8899999999999998874433 788999
Q ss_pred CCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 042603 84 LRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYI 163 (874)
Q Consensus 84 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 163 (874)
|++|++++|.++.. ..+..+++|++|++++|.+++..+ +.++++|++|++++|.+++. +. +..+++|++|++
T Consensus 109 L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred CCEEECCCCCCCCc----hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEEC
Confidence 99999999999873 248899999999999999987655 88899999999999999854 43 889999999999
Q ss_pred cCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccccccc
Q 042603 164 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNNHFQI 219 (874)
Q Consensus 164 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~ 219 (874)
++|.+++..+ +..+++|++|++++|++++ ++ .+..+++|++|++++|++++
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence 9999986544 8899999999999999986 44 37889999999999998864
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.2e-20 Score=208.59 Aligned_cols=188 Identities=24% Similarity=0.370 Sum_probs=126.2
Q ss_pred cCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccC
Q 042603 474 ALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSY 553 (874)
Q Consensus 474 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~ 553 (874)
+++.|++++|.+++ +|..+ .++|+.|++++|+++ .+| ..+++|+.|++++|++++++. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 78888888888876 55544 367888888888877 455 235677778887777777443 433 777777777
Q ss_pred ccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccC
Q 042603 554 NRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHAS 633 (874)
Q Consensus 554 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 633 (874)
|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------- 179 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------- 179 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence 77775 444 56777777777777775 444 46677777777777764 443 21
Q ss_pred CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccC-------CeEecCCccc
Q 042603 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRI-------RALNLSHNNL 706 (874)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l 706 (874)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|
T Consensus 180 ------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 180 ------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp ------------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred ------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 26677777777777 5555 543 56 7777777777
Q ss_pred ccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC
Q 042603 707 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN 742 (874)
Q Consensus 707 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 742 (874)
+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 7 4566666677777777777777777777666654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.4e-19 Score=192.92 Aligned_cols=242 Identities=19% Similarity=0.144 Sum_probs=170.0
Q ss_pred cEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCE-EEc
Q 042603 330 ATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEI-LAL 408 (874)
Q Consensus 330 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~-L~L 408 (874)
++++.+++.++ .+|..+ .+++++|++++|+|+.+.+.+|.++++|++|++++|++.+.+|...+.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46778888887 788765 3588999999999986666788889999999999998876777766666666654 455
Q ss_pred ccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCccccc
Q 042603 409 SNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGP 488 (874)
Q Consensus 409 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 488 (874)
+.|+++...+..|..+++|++|++++|++....+..+.....+..+++.++ +++...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 566776666666666666666666666665444444434444444444332 334333
Q ss_pred CCccccCCC-CCCEEECcCCcCcccCCCCCCCCcccEEEeeC-cccCccchhhhhcCCCCcEEEccCccCCCCCchhhcC
Q 042603 489 IPNEFCQLD-CLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK-NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDK 566 (874)
Q Consensus 489 ~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 566 (874)
.+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++.+.+.+|..+++|++||+++|+++...+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 344454543 57788888888887666777777888888874 6788787888999999999999999999544444
Q ss_pred CCCCcEEEccCccCcccCCccccCCCCCCEEEccCC
Q 042603 567 LPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHN 602 (874)
Q Consensus 567 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 602 (874)
+.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4556666665555444666 4788999999998754
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.2e-19 Score=180.92 Aligned_cols=114 Identities=22% Similarity=0.281 Sum_probs=86.4
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..+..+++|+.|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 55566666666666667777777778888888888776666667777888888888888877777777778888888888
Q ss_pred CCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
+|++++..+..+..+++++.+++.+|||.|+|++
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 8888777777677777788888888888886654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=5.8e-19 Score=189.95 Aligned_cols=238 Identities=18% Similarity=0.141 Sum_probs=158.7
Q ss_pred CEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcE-EEc
Q 042603 281 NNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMH-LNL 359 (874)
Q Consensus 281 ~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-L~l 359 (874)
+.+++++++++ .+|..++ +++++|+|++|+++.+.+..|.++++|++|+|++|++.+.+|...|..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888887 7887653 578999999999998888889999999999999999877788888877887765 566
Q ss_pred cCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEccc-CcccccCCccccCCC-CCCeEEccCCcC
Q 042603 360 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSN-NTLQGHIFSEKFNLT-NLKRLQLDGNKF 437 (874)
Q Consensus 360 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l 437 (874)
.+|++++..|..|..+++|++|++++|+++ .++...+....++..+++.+ +.+....+..+..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 778898888889999999999999999998 45544444455677777765 456655555555543 466777777777
Q ss_pred cccCCccccccCCCCeEEccC-CcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCC
Q 042603 438 IGEIPESLSKCYLLGGLYLSD-NHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSC 516 (874)
Q Consensus 438 ~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 516 (874)
+...+..+ ...+|+++++++ |.++...+..|..+++|+.|++++|+++...+.. +.+|+.|.+.++.-...+|..
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCT
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCc
Confidence 64433333 345666666654 4444333345666666666666666666443333 234444444443333334433
Q ss_pred CCCCcccEEEe
Q 042603 517 LSLGSIEQVHL 527 (874)
Q Consensus 517 ~~~~~L~~L~l 527 (874)
..+++|+.+++
T Consensus 243 ~~l~~L~~l~l 253 (350)
T 4ay9_X 243 EKLVALMEASL 253 (350)
T ss_dssp TTCCSCCEEEC
T ss_pred hhCcChhhCcC
Confidence 33333333333
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.3e-19 Score=177.70 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=108.5
Q ss_pred CCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccccc
Q 042603 544 PYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYD 623 (874)
Q Consensus 544 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 623 (874)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------- 98 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------- 98 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------
Confidence 34555555555555444445555666666666666665544445566666666666666665322222221
Q ss_pred CCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCC
Q 042603 624 AVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH 703 (874)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 703 (874)
+++|+.|++++|++++..+..|..+++|++|+|++
T Consensus 99 ---------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 99 ---------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 24677777777777766666778888888999999
Q ss_pred cccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccCCCcccc
Q 042603 704 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKIPDRVAQ 764 (874)
Q Consensus 704 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 764 (874)
|++++..+..|..+++|++|++++|++.+. ++.|+.|+++.|+++|.+|..++.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcc
Confidence 988887777788889999999999988754 346788888999999988876543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3e-19 Score=201.68 Aligned_cols=195 Identities=23% Similarity=0.276 Sum_probs=113.1
Q ss_pred CCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeC
Q 042603 450 LLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSK 529 (874)
Q Consensus 450 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~ 529 (874)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|++++ +|. +. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence 66666666666664 44433 256666666666666 344 335666666666666665 444 22 2666666666
Q ss_pred cccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCC
Q 042603 530 NKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIP 609 (874)
Q Consensus 530 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 609 (874)
|+++++++ .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+++ .+|
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 66666433 45666666666666664 443 45666666666666664 444 44 66666666666665 444
Q ss_pred chhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcc
Q 042603 610 PCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQ 689 (874)
Q Consensus 610 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 689 (874)
. +.. .+ ....+.++.|+|++|.|+ .+|..
T Consensus 197 ~-~~~-~L------------------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 197 A-VPV-RN------------------------------------------------HHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp C-CC---------------------------------------------------------CCEEEECCSSCCC-CCCGG
T ss_pred h-HHH-hh------------------------------------------------hcccccceEEecCCCcce-ecCHH
Confidence 3 211 00 000123466666666666 45666
Q ss_pred ccccccCCeEecCCcccccchhhhccCCC
Q 042603 690 IGYLTRIRALNLSHNNLTGTIPTTFSNLK 718 (874)
Q Consensus 690 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 718 (874)
+..+++|+.|+|++|.+++.+|..+..++
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66666666666666666666666665543
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=177.67 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=68.1
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|++++..+..|+.+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..+..+++|+.|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 45555555555555555556666666666666666665555556666666666666666666556666666666666666
Q ss_pred CCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
+|++++.+|..+..+++++.+++.+|||.|+|+
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 666666656555556666666666666666544
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.4e-19 Score=195.45 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=63.0
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhh---hcCCCCCeE
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL---IVLNTLAVF 747 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l---~~l~~L~~l 747 (874)
+|+.|+|++|+|++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+ ..+++|+.|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 44445555555554444455556666666666666665555666666666666666666664333333 345666666
Q ss_pred EccCCCCcccCCCccccCCC--CCcccccCCCCCCCCC
Q 042603 748 RVAYNNLSGKIPDRVAQFST--FEEDSYEGNPFLCGLP 783 (874)
Q Consensus 748 ~ls~N~l~~~~p~~~~~~~~--l~~~~~~gNp~~C~~~ 783 (874)
++++|+|++..+..+..++. +..+++.||||.|+|.
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 66666666544444444443 2556677777777664
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=6.3e-19 Score=174.51 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=34.2
Q ss_pred CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599 (874)
Q Consensus 520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 599 (874)
++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 33333333333333333333344444444444444444333333444444444444444444333333344444444444
Q ss_pred cCCc
Q 042603 600 SHNN 603 (874)
Q Consensus 600 s~N~ 603 (874)
++|+
T Consensus 156 ~~N~ 159 (208)
T 2o6s_A 156 HDNP 159 (208)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 4443
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.4e-18 Score=172.63 Aligned_cols=110 Identities=23% Similarity=0.310 Sum_probs=54.4
Q ss_pred cceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccC
Q 042603 672 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAY 751 (874)
Q Consensus 672 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~ 751 (874)
|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|++++
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence 333444444443333333444555555555555555444444555555555555555555 4444555555555555555
Q ss_pred CCCcccCCCccccCCCCCcccccCCCCCCCC
Q 042603 752 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL 782 (874)
Q Consensus 752 N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~ 782 (874)
|++++..+..+..+++++.+++.|||+.|+|
T Consensus 145 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 145 NQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 5555444444444555555555555555543
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=169.35 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=64.4
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 56666666666666666667777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCcccCC
Q 042603 751 YNNLSGKIP 759 (874)
Q Consensus 751 ~N~l~~~~p 759 (874)
+|++.+..+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 777765544
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=8.2e-18 Score=175.46 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=58.1
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
++|+.|++++|++++. ..++.+++|+.|+|++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|++
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL 207 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 3666666777766643 456777777777777777776655 77777777888887777753 3 3777777888888
Q ss_pred cCCCCccc
Q 042603 750 AYNNLSGK 757 (874)
Q Consensus 750 s~N~l~~~ 757 (874)
++|+++..
T Consensus 208 ~~n~i~~~ 215 (291)
T 1h6t_A 208 FSQECLNK 215 (291)
T ss_dssp EEEEEECC
T ss_pred cCCcccCC
Confidence 87777653
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=6.3e-18 Score=168.31 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=51.3
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|+++
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 44555555555554444445556666666666666666666666666666666666666666555556666666666666
Q ss_pred CCCCcc
Q 042603 751 YNNLSG 756 (874)
Q Consensus 751 ~N~l~~ 756 (874)
+|++..
T Consensus 161 ~N~~~c 166 (220)
T 2v9t_B 161 QNPFIC 166 (220)
T ss_dssp SSCEEC
T ss_pred CCCcCC
Confidence 666543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.5e-18 Score=183.67 Aligned_cols=177 Identities=21% Similarity=0.204 Sum_probs=115.9
Q ss_pred CEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhh-cCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCc
Q 042603 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIH-YYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANN 578 (874)
Q Consensus 500 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 578 (874)
+.++++++++.. +|..+ ...++.|++++|+++++.+..|. .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888763 44433 24577788888888777777776 7777777887777777666667777777777777777
Q ss_pred cCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEec
Q 042603 579 YIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTK 658 (874)
Q Consensus 579 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (874)
++++..+..|..+++|+.|+|++|++++..|..+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-------------------------------------------- 134 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-------------------------------------------- 134 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------------------------------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC--------------------------------------------
Confidence 777666666777777777777777776443333322
Q ss_pred CcccccccccccCcceEEcCCCcccccCCccc---cccccCCeEecCCcccccchhhhccCCCC--CCEEECCCCcCcc
Q 042603 659 NMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI---GYLTRIRALNLSHNNLTGTIPTTFSNLKQ--IESLDLSYNLLHG 732 (874)
Q Consensus 659 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~LdLs~N~l~~ 732 (874)
+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..|..++. ++.|+|++|++..
T Consensus 135 ----------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 135 ----------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ----------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ----------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 2366666666666664333333 45666666666666666655566666655 3666666666653
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.8e-17 Score=171.45 Aligned_cols=173 Identities=20% Similarity=0.292 Sum_probs=140.3
Q ss_pred ccCCCCCCEEEccCCcccccccCccccCCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCcccccccc
Q 042603 26 IASFSSLKYLSMRGCVLKGALHGQDFHEFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLC 105 (874)
Q Consensus 26 l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~ 105 (874)
+..+++|++|++++|.+.+. + .+..+++|++|++++|.+..... +..+++|++|++++|.++.. ..+.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~--~~~~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~----~~l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDL----SSLK 109 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCG----GGGT
T ss_pred hhhcCcccEEEccCCCcccC-h--hHhcCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCCCcCCCC----hhhc
Confidence 45678889999998887633 3 47788899999999888763322 67889999999999988762 3488
Q ss_pred CCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEE
Q 042603 106 ELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVL 185 (874)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 185 (874)
.+++|++|++++|++++. ..+.++++|++|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|++|
T Consensus 110 ~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 899999999999998865 4578889999999999998865 568889999999999999887654 8889999999
Q ss_pred EcccccccccCCccccCCCCCCCEEEcccccccc
Q 042603 186 DVSYNQLTENISSSPLMHLTSIEELILSNNHFQI 219 (874)
Q Consensus 186 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~ 219 (874)
++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 184 ~L~~N~i~~-l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISD-LR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCB-CG--GGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCC-Ch--hhccCCCCCEEECcCCcccC
Confidence 999999876 54 48889999999999988763
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.7e-18 Score=193.65 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=46.8
Q ss_pred CCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEc
Q 042603 496 LDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILL 575 (874)
Q Consensus 496 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 575 (874)
++.|+.|++++|.+. .++....+++|+.|+|++|+++++.+ +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|
T Consensus 42 L~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCC-CChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 334444444444443 12222223444444444444444333 4455555555555555543 22 3445555555555
Q ss_pred cCccCcccCCccccCCCCCCEEEccCCcCC
Q 042603 576 ANNYIEGEIPVQLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 576 ~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 605 (874)
++|.+.+. ..+..+++|+.|+|++|.++
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 55555432 23444555555555555544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.1e-17 Score=191.16 Aligned_cols=193 Identities=27% Similarity=0.392 Sum_probs=160.4
Q ss_pred CEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCcc
Q 042603 500 KVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNY 579 (874)
Q Consensus 500 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 579 (874)
..+.+..+.+.... ....+..|+.|++++|.++.+. .+..+++|+.|+|++|++++..| +..+++|+.|+|++|.
T Consensus 24 ~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 33445555554322 2234778999999999998774 58899999999999999997655 8999999999999999
Q ss_pred CcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecC
Q 042603 580 IEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKN 659 (874)
Q Consensus 580 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (874)
+.+. | .+..+++|+.|+|++|.+++ +| .+..
T Consensus 99 l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~--------------------------------------------- 129 (605)
T 1m9s_A 99 IKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GLVH--------------------------------------------- 129 (605)
T ss_dssp CCCC-T-TSTTCTTCCEEECTTSCCCC-CG-GGGG---------------------------------------------
T ss_pred CCCC-h-hhccCCCCCEEEecCCCCCC-Cc-cccC---------------------------------------------
Confidence 9853 3 78999999999999999974 22 2222
Q ss_pred cccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhh
Q 042603 660 MSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 739 (874)
Q Consensus 660 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 739 (874)
+++|+.|+|++|.+++. ..++.+++|+.|+|++|++++..| +..+++|+.|+|++|+|++. +.+.
T Consensus 130 ---------l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~ 194 (605)
T 1m9s_A 130 ---------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA 194 (605)
T ss_dssp ---------CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred ---------CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence 45899999999999965 679999999999999999998877 99999999999999999975 4689
Q ss_pred cCCCCCeEEccCCCCcccCCCc
Q 042603 740 VLNTLAVFRVAYNNLSGKIPDR 761 (874)
Q Consensus 740 ~l~~L~~l~ls~N~l~~~~p~~ 761 (874)
.+++|+.|++++|++++.+...
T Consensus 195 ~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp TCTTCSEEECCSEEEECCCCCC
T ss_pred cCCCCCEEEccCCcCcCCcccc
Confidence 9999999999999998765443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=5e-17 Score=163.04 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=41.4
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|+++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 3334444444444333334444455555555555555 344444555555555555555554444445555555555555
Q ss_pred CCCCccc
Q 042603 751 YNNLSGK 757 (874)
Q Consensus 751 ~N~l~~~ 757 (874)
+|++.+.
T Consensus 168 ~N~~~c~ 174 (229)
T 3e6j_A 168 GNPWDCE 174 (229)
T ss_dssp TSCBCTT
T ss_pred CCCccCC
Confidence 5555443
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.6e-17 Score=160.03 Aligned_cols=114 Identities=24% Similarity=0.359 Sum_probs=106.2
Q ss_pred CcceEEcCCCcccccCCc-cccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 671 SMSGIDLSCNKLTGEIPT-QIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
.++.|++++|++++..+. .|+.+++|++|+|++|+|++..|..|+++++|++|+|++|+|++..|..+..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 778999999999977664 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 750 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 750 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
++|++++.+|..+..+++++.+++.+|||.|+|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999899999999999999999998765
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=9e-20 Score=207.35 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=50.8
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccch-hhhccCCCCCCEEECCCCcCcccCCh---hhhcCCCCCe
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIPP---QLIVLNTLAV 746 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p~---~l~~l~~L~~ 746 (874)
+|+.|+|++|.|++ +| .++.+++|+.|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 55555566666654 45 6667777777777777777665 77777777777777777777766542 2334677777
Q ss_pred EEc
Q 042603 747 FRV 749 (874)
Q Consensus 747 l~l 749 (874)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=158.66 Aligned_cols=114 Identities=23% Similarity=0.362 Sum_probs=107.7
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
+.++.|++++|.++ .+|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47889999999999 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 750 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 750 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
++|++++..+..+..+++++.+++.+|||.|+|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999998888888999999999999999997654
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.3e-17 Score=169.20 Aligned_cols=172 Identities=16% Similarity=0.197 Sum_probs=135.9
Q ss_pred CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEE
Q 042603 519 LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLID 598 (874)
Q Consensus 519 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 598 (874)
+.++..+++++|.++++. .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 445666777777777665 46777888888888888874 44 67888888889998888886544 88888999999
Q ss_pred ccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcC
Q 042603 599 LSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLS 678 (874)
Q Consensus 599 Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 678 (874)
+++|++++ +|... .++|+.|+++
T Consensus 92 L~~N~l~~-l~~~~--------------------------------------------------------~~~L~~L~L~ 114 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP--------------------------------------------------------SACLSRLFLD 114 (263)
T ss_dssp CCSSCCSC-CTTCC--------------------------------------------------------CSSCCEEECC
T ss_pred CCCCccCC-cCccc--------------------------------------------------------cCcccEEEcc
Confidence 99998863 22110 0378889999
Q ss_pred CCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCCCCcccC
Q 042603 679 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYNNLSGKI 758 (874)
Q Consensus 679 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 758 (874)
+|++++. + .++.+++|+.|+|++|++++. | .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++..
T Consensus 115 ~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 115 NNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 9999853 3 588899999999999999975 3 688899999999999999877 67889999999999999988764
Q ss_pred C
Q 042603 759 P 759 (874)
Q Consensus 759 p 759 (874)
.
T Consensus 189 ~ 189 (263)
T 1xeu_A 189 V 189 (263)
T ss_dssp E
T ss_pred c
Confidence 3
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=5e-17 Score=158.07 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=52.1
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|+|++|++++..|..|+.+++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 45555555555555555555555666666666666665555555566666666666666665555556666666666666
Q ss_pred CCCCcccCC
Q 042603 751 YNNLSGKIP 759 (874)
Q Consensus 751 ~N~l~~~~p 759 (874)
+|++.+..+
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 666655443
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7.1e-17 Score=157.93 Aligned_cols=81 Identities=21% Similarity=0.342 Sum_probs=50.0
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcc-cccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
+|+.|++++|++++..|..++.+++|++|+|++|+ ++ .+| .+..+++|++|++++|++++. + .+..+++|+.|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEe
Confidence 55556666666665556666666677777777776 44 334 466667777777777777653 2 5666677777777
Q ss_pred cCCCCc
Q 042603 750 AYNNLS 755 (874)
Q Consensus 750 s~N~l~ 755 (874)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 777654
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.4e-16 Score=155.93 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=98.5
Q ss_pred CcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEc
Q 042603 520 GSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDL 599 (874)
Q Consensus 520 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 599 (874)
++|+.|++++|.++.+. .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34555555555555332 3555666666666666554 2235666777777777777776666666777777777777
Q ss_pred cCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCC
Q 042603 600 SHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSC 679 (874)
Q Consensus 600 s~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 679 (874)
++|.+++..|..+.. +++|+.|++++
T Consensus 120 s~n~i~~~~~~~l~~------------------------------------------------------l~~L~~L~L~~ 145 (197)
T 4ezg_A 120 SHSAHDDSILTKINT------------------------------------------------------LPKVNSIDLSY 145 (197)
T ss_dssp CSSBCBGGGHHHHTT------------------------------------------------------CSSCCEEECCS
T ss_pred cCCccCcHhHHHHhh------------------------------------------------------CCCCCEEEccC
Confidence 777776545544433 23677777777
Q ss_pred Cc-ccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603 680 NK-LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 732 (874)
Q Consensus 680 N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 732 (874)
|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus 146 n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 146 NGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 77 44 455 578888888888888888864 3 67888888888888888754
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.8e-17 Score=172.71 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=56.5
Q ss_pred CCCCCEEECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCc-EEEccCccCCCCCchhhcCCCCCcEE
Q 042603 496 LDCLKVLDLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLV-TLDLSYNRLHGSIPNWIDKLPQLSYI 573 (874)
Q Consensus 496 l~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L 573 (874)
+++|+.+++++|+++...+..+. +.+|+++++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 44555555555555433333333 455555555554 5555555666666666 666655 4554445566666666666
Q ss_pred EccCccCcccCCccccCCCCCCEEE
Q 042603 574 LLANNYIEGEIPVQLCQLKEVRLID 598 (874)
Q Consensus 574 ~l~~n~~~~~~~~~~~~l~~L~~L~ 598 (874)
++.+|.+....+.+|.++++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666655555666666666554
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.7e-18 Score=196.83 Aligned_cols=216 Identities=18% Similarity=0.160 Sum_probs=141.6
Q ss_pred CCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEE
Q 042603 423 NLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502 (874)
Q Consensus 423 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 502 (874)
.+++|+.|++++|++. .+|..+..+++|+.|++++|......+..+ ..+...+..|..+..+++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 3455555555555554 445555555555555554432100000000 0011233445555556666666
Q ss_pred E-CcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603 503 D-LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581 (874)
Q Consensus 503 ~-L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 581 (874)
+ ++.|.+. .|+.+.+.+|.++.+.+ ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++
T Consensus 415 ~~l~~n~~~----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 415 DPMRAAYLD----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp CGGGHHHHH----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred cchhhcccc----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 6 4544432 45556666666655433 247888888888885 565 888888888888888888
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcc
Q 042603 582 GEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMS 661 (874)
Q Consensus 582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (874)
.+|..++.+++|+.|+|++|++++ +| .+..
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~----------------------------------------------- 506 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVAN----------------------------------------------- 506 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-----------------------------------------------
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-----------------------------------------------
Confidence 678888888888888888888875 55 4333
Q ss_pred cccccccccCcceEEcCCCcccccC-CccccccccCCeEecCCcccccchhh---hccCCCCCCEEEC
Q 042603 662 YYYRGRILTSMSGIDLSCNKLTGEI-PTQIGYLTRIRALNLSHNNLTGTIPT---TFSNLKQIESLDL 725 (874)
Q Consensus 662 ~~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdL 725 (874)
+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|.+++.+|. .+..+++|+.||+
T Consensus 507 -------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 -------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 348888999999998776 89999999999999999999977553 2445889999875
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.8e-17 Score=193.12 Aligned_cols=117 Identities=26% Similarity=0.264 Sum_probs=34.8
Q ss_pred ccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEcc
Q 042603 473 LALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLS 552 (874)
Q Consensus 473 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls 552 (874)
+.++.|++.+|.+... +.. .++.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~-------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE-------------DDDIENRMV-MPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC-------------cccccccee-cChhhhccCCCCcEEECC
Confidence 4466677777776542 222 23444455444432 122223222 234444555555555555
Q ss_pred CccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchh
Q 042603 553 YNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCL 612 (874)
Q Consensus 553 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 612 (874)
+|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence 55554 34444445555555555555555 44555555555555555555554 444443
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.6e-16 Score=161.33 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=117.0
Q ss_pred CCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEE
Q 042603 424 LTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLD 503 (874)
Q Consensus 424 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 503 (874)
+.+++.++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555556666555332 35566666666666666653 33 46666677777777777665433 66777777777
Q ss_pred CcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCccc
Q 042603 504 LSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGE 583 (874)
Q Consensus 504 L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 583 (874)
+++|++++ +|.... ++|+.|++++|++++.. .+..+++|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 92 L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSC-CTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCC-cCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 77777764 333333 67888888888877752 477788888888888888854 3 577888888888888888865
Q ss_pred CCccccCCCCCCEEEccCCcCCCC
Q 042603 584 IPVQLCQLKEVRLIDLSHNNLSGH 607 (874)
Q Consensus 584 ~~~~~~~l~~L~~L~Ls~N~l~~~ 607 (874)
..+..+++|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5678888888888888888643
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=4.4e-17 Score=191.39 Aligned_cols=224 Identities=21% Similarity=0.223 Sum_probs=113.3
Q ss_pred CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL 504 (874)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 504 (874)
+.++.|++.+|.+... +. ..++.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hh-----hHhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 4566777777766532 22 224455555555442 233344444 45677888888888888
Q ss_pred cCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccC
Q 042603 505 SNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEI 584 (874)
Q Consensus 505 ~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 584 (874)
++|.+....+..+.+++|++|+|++|+|+ .+|..+..+++|++|+|++|+++ .+|..++++++|++|+|++|.++ .+
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 88888744445556888888888888888 55677888999999999999998 67888999999999999999987 67
Q ss_pred CccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccc
Q 042603 585 PVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY 664 (874)
Q Consensus 585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (874)
|..|..+++|+.|+|++|++++.+|..+....
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~------------------------------------------------ 340 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS------------------------------------------------ 340 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH------------------------------------------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcc------------------------------------------------
Confidence 87899999999999999999888887765432
Q ss_pred ccccccCcceEEcCCCcccccCCccccccccCCeEecCCc--------ccccchhhhccCCCCCCEEECCCCcCc
Q 042603 665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN--------NLTGTIPTTFSNLKQIESLDLSYNLLH 731 (874)
Q Consensus 665 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~LdLs~N~l~ 731 (874)
.....++|++|.+++.+|.. |+.|++++| .+++..+..+.++..++...+++|-+.
T Consensus 341 -----~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 341 -----VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----HHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred -----hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 01223678888888877764 445667766 455555555566666677777777665
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.9e-16 Score=165.52 Aligned_cols=291 Identities=11% Similarity=0.081 Sum_probs=163.1
Q ss_pred CCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccC---
Q 042603 54 FKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLAN--- 130 (874)
Q Consensus 54 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~--- 130 (874)
+.+++.|.++++-. ...+..+-..+++|++|||++|++..... .-+.++.++.+.+..+. +...+|.+
T Consensus 24 ~~~l~~L~l~g~i~---~~~~~~l~~~l~~L~~LdLs~n~i~~~~~---~~~~~~~~~~~~~~~~~---I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKLN---AEDFRHLRDEFPSLKVLDISNAEIKMYSG---KAGTYPNGKFYIYMANF---VPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEEC---HHHHHHHHHSCTTCCEEEEEEEEECCEEE---SSSSSGGGCCEEECTTE---ECTTTTEEEET
T ss_pred hCceeEEEEecccc---HHHHHHHHHhhccCeEEecCcceeEEecC---ccccccccccccccccc---cCHHHhccccc
Confidence 45566666665421 11122122227888888888888762111 11223334555555553 33455666
Q ss_pred -----CCCCCEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCccccccCCCCCCEEEcccccc---cccCCccccC
Q 042603 131 -----MTSLQVLNVASNQLTGNFPPGFCELVLLRELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL---TENISSSPLM 202 (874)
Q Consensus 131 -----l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~l~ 202 (874)
+++|+.|++++ .++.+.+.+|.++++|+++++++|.+..+.+.+|..+.++..+....+.. ...+....|.
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 88888888887 67766666788888888888888877767777777777777666654221 0112222444
Q ss_pred CCCCCC-EEEccccccccccCcccccCCCCCceeccccccccccccCCCCCCceeeEEEccCCCCCCCCChhccCCCCCC
Q 042603 203 HLTSIE-ELILSNNHFQIPISLEPLFNLSKLKTFNGEIYAETESHYNSLTPKFQLTSISLSGYGDGGTFPKFLYHQHDLN 281 (874)
Q Consensus 203 ~l~~L~-~L~l~~n~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 281 (874)
++.+|+ .+.+..... .+.. .+.... ...+++
T Consensus 174 ~~~~L~~~i~~~~~~~---l~~~---------------------~~~~~~------------------------~~~~~~ 205 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGK---LEDE---------------------IMKAGL------------------------QPRDIN 205 (329)
T ss_dssp ESCCCEEEEEECTTCC---HHHH---------------------HHHTTC------------------------CGGGCS
T ss_pred cccccceeEEecCCCc---HHHH---------------------Hhhccc------------------------Cccccc
Confidence 455554 333222110 0000 000000 112222
Q ss_pred EEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCc-EEEcc
Q 042603 282 NADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM-HLNLS 360 (874)
Q Consensus 282 ~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~-~L~l~ 360 (874)
.+.+.++-.. .....+...+++|+.+++++|++..+.+.+|.++.+|+.+++.+| +. .|+...|..+++|+ .+++.
T Consensus 206 ~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 206 FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEEC
T ss_pred eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEc
Confidence 2332222111 111112223566777777776666666667777777777777776 44 66777776677777 77777
Q ss_pred CCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEE
Q 042603 361 RNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILA 407 (874)
Q Consensus 361 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 407 (874)
+ .++.+.+.+|.+|++|+.++++.|+++ .++...|.++++|+.++
T Consensus 283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 283 A-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred c-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 6 566566677777777777777777776 66666666777777665
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.5e-15 Score=144.20 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=105.6
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
++++.|++++|++++..+..|+.+++|++|+|++|++++..+..|+++++|++|++++|++++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 47899999999999877788899999999999999999888888999999999999999999888888999999999999
Q ss_pred cCCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 750 AYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 750 s~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
++|++++.++..+..+++++.+++.+||+.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998888777889999999999999999765
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=2.1e-14 Score=155.80 Aligned_cols=263 Identities=11% Similarity=0.065 Sum_probs=147.9
Q ss_pred CCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEE
Q 042603 303 TDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLD 382 (874)
Q Consensus 303 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 382 (874)
..++.+.+.+ .++.+...+|.++ +|+.+++..+ ++ .|+...|.. .+|+.+.+.. .+..+.+.+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4455555543 2444455556554 5777777655 33 566666654 3677777765 55556666777777777777
Q ss_pred cccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCC
Q 042603 383 ISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 462 (874)
Q Consensus 383 l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 462 (874)
+.+|+++ .++...+. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++
T Consensus 187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred cCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7777776 66666654 566777777633 55555666666667777766654 34344455555 456666663 3333
Q ss_pred CCCchhhhccccCCeeecCCCccc-----ccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccch
Q 042603 463 GKIPRWLGSLLALQDIIMPNNNLE-----GPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLE 537 (874)
Q Consensus 463 ~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 537 (874)
.....+|.++++|+.+.+.+|.+. ...+.+|.+|++|+.+++. +.++.+..
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~------------------------~~i~~I~~ 316 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP------------------------ESIRILGQ 316 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC------------------------TTCCEECT
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC------------------------CceEEEhh
Confidence 334445555555555555554433 2333445555555555544 23444444
Q ss_pred hhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC-CCCEEEccCCc
Q 042603 538 SIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK-EVRLIDLSHNN 603 (874)
Q Consensus 538 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~ 603 (874)
.+|.+|++|+.+++..| ++.+.+.+|.++ +|+.+.+.+|.+....+..|.+++ .++.|.+..+.
T Consensus 317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 55555556666665433 443444555555 666666666655544455555553 55566555544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.7e-15 Score=141.61 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=44.9
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccch-hhhccCCCCCCEEECCCCcCcccCC---hhhhcCCCCCe
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIP---PQLIVLNTLAV 746 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~~ 746 (874)
+|+.|++++|.+++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 3444444444444444444444555555555555555432 2455555666666666666654443 35555666666
Q ss_pred EEccCCCCc
Q 042603 747 FRVAYNNLS 755 (874)
Q Consensus 747 l~ls~N~l~ 755 (874)
|++++|.+.
T Consensus 152 L~l~~n~~~ 160 (168)
T 2ell_A 152 LDGYDREDQ 160 (168)
T ss_dssp ETTEETTSC
T ss_pred ecCCCCChh
Confidence 666666554
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.9e-15 Score=141.45 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=114.6
Q ss_pred cCCCCcEEEccCccCC-CCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhccccccc
Q 042603 542 YYPYLVTLDLSYNRLH-GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEG 620 (874)
Q Consensus 542 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 620 (874)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 3478999999999998 67788888999999999999999866 77889999999999999998766665544
Q ss_pred cccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccC-CccccccccCCeE
Q 042603 621 YYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEI-PTQIGYLTRIRAL 699 (874)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L 699 (874)
+++|+.|++++|.+++.. +..+..+++|++|
T Consensus 94 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 94 ------------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp ------------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred ------------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 348899999999998642 2788999999999
Q ss_pred ecCCcccccchh---hhccCCCCCCEEECCCCcCcc
Q 042603 700 NLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHG 732 (874)
Q Consensus 700 ~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~ 732 (874)
++++|.+++..+ ..+..+++|++||+++|.+..
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999997766 588999999999999999874
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.8e-15 Score=137.70 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=57.7
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccc-hhhhccCCCCCCEEECCCCcCcccCC---hhhhcCCCCC
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGKIP---PQLIVLNTLA 745 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 745 (874)
++|+.|++++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++++|++++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 3666666666666655666666677777777777777764 34677777777777777777776655 4677777777
Q ss_pred eEEccC
Q 042603 746 VFRVAY 751 (874)
Q Consensus 746 ~l~ls~ 751 (874)
.|++++
T Consensus 144 ~L~l~d 149 (149)
T 2je0_A 144 YLDGYD 149 (149)
T ss_dssp EETTBC
T ss_pred cccCCC
Confidence 777653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=140.73 Aligned_cols=87 Identities=26% Similarity=0.258 Sum_probs=68.3
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
++|+.|+|++|.|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 36667777777777666777888888888888888888777778888888888888888888766667788888888888
Q ss_pred cCCCCcc
Q 042603 750 AYNNLSG 756 (874)
Q Consensus 750 s~N~l~~ 756 (874)
++|++.+
T Consensus 134 ~~N~~~C 140 (193)
T 2wfh_A 134 GANPLYC 140 (193)
T ss_dssp CSSCEEC
T ss_pred CCCCeec
Confidence 8888764
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=8.1e-14 Score=151.25 Aligned_cols=268 Identities=13% Similarity=0.109 Sum_probs=171.2
Q ss_pred CCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEEC
Q 042603 425 TNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDL 504 (874)
Q Consensus 425 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 504 (874)
..++.+.+.. .++.....+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.+ .+..+.+.+|.+|++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3344444433 2333444455554 4666666554 443444555553 577777765 555566677888888888888
Q ss_pred cCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccC
Q 042603 505 SNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEI 584 (874)
Q Consensus 505 ~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 584 (874)
++|+++......+...+|+.+.+.. .++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.+....
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence 8888876666677778888888874 477788888999999999999875 55455667777 78899988 45566667
Q ss_pred CccccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCccccc
Q 042603 585 PVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYY 664 (874)
Q Consensus 585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (874)
..+|.++++|+.+++.+|.+.......+... .+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-----------------------------------------------aF 296 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-----------------------------------------------CL 296 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTT-----------------------------------------------TT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHH-----------------------------------------------Hh
Confidence 7888899999999988877641100000000 00
Q ss_pred ccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCC-C
Q 042603 665 RGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN-T 743 (874)
Q Consensus 665 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~ 743 (874)
..+++|+.+++. +.++.+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ .
T Consensus 297 --~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 297 --EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDD 371 (401)
T ss_dssp --TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTT
T ss_pred --hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCC
Confidence 013466666666 3455555666777777777777444 565666677777 777777777766655555565553 4
Q ss_pred CCeEEccCCC
Q 042603 744 LAVFRVAYNN 753 (874)
Q Consensus 744 L~~l~ls~N~ 753 (874)
+..+.+..+.
T Consensus 372 l~~l~vp~~~ 381 (401)
T 4fdw_A 372 ITVIRVPAES 381 (401)
T ss_dssp CCEEEECGGG
T ss_pred ccEEEeCHHH
Confidence 5555555443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.5e-15 Score=137.90 Aligned_cols=129 Identities=21% Similarity=0.272 Sum_probs=105.7
Q ss_pred CCCCcEEEccCccCC-CCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhhcccccccc
Q 042603 543 YPYLVTLDLSYNRLH-GSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGY 621 (874)
Q Consensus 543 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 621 (874)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 356888888888887 67777778888888888888888865 67888889999999999888666655443
Q ss_pred ccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCccccc-CCccccccccCCeEe
Q 042603 622 YDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGE-IPTQIGYLTRIRALN 700 (874)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ 700 (874)
+++|+.|++++|.+++. .|..++.+++|++|+
T Consensus 87 -----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 87 -----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp -----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred -----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 34888999999999864 347899999999999
Q ss_pred cCCcccccchh---hhccCCCCCCEEECCC
Q 042603 701 LSHNNLTGTIP---TTFSNLKQIESLDLSY 727 (874)
Q Consensus 701 Ls~N~l~~~~p---~~~~~l~~L~~LdLs~ 727 (874)
+++|.+++..+ ..++.+++|+.||+++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998776 6899999999999874
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=9.2e-15 Score=138.71 Aligned_cols=110 Identities=25% Similarity=0.292 Sum_probs=101.2
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+.+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|||++|+|++..|..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4568999999999 5777664 899999999999999999999999999999999999998888888999999999999
Q ss_pred CCCCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
+|+|++.+|..+..+++++.+++.+||+.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999888888999999999999999999764
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.5e-13 Score=150.13 Aligned_cols=332 Identities=14% Similarity=0.105 Sum_probs=172.1
Q ss_pred ccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchh
Q 042603 315 LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPE 394 (874)
Q Consensus 315 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 394 (874)
++.+...+|.++.+|+.+.+..+ ++ .|+...|..+++|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence 44455566777777777777643 43 566666666667777777544 44444556666666665544432 22 2333
Q ss_pred HHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhcccc
Q 042603 395 RMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLA 474 (874)
Q Consensus 395 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 474 (874)
..+.++..++ ...... .......+|.+|++|+.+.+.++.. .....+|.++.+
T Consensus 134 ~aF~~~~~~~------------------------~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~ 186 (394)
T 4fs7_A 134 EAFKGCDFKE------------------------ITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGK 186 (394)
T ss_dssp TTTTTCCCSE------------------------EECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTT
T ss_pred eeeecccccc------------------------cccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCC
Confidence 3333232211 111111 1112234455555566655554322 233445556666
Q ss_pred CCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCc
Q 042603 475 LQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYN 554 (874)
Q Consensus 475 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n 554 (874)
|+.+.+..+ +......+|.++..|+.+.+..+... .....+....|+.+.+.. .++.+...+|.++..++.+.+..+
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECC-CceecccccccccccceeEEcCCC
Confidence 666666554 33344555666666666666554432 222334455666666643 334455556777777777777665
Q ss_pred cCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCc-hhhccccccccccCCCCCccccC
Q 042603 555 RLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPP-CLVNTALSEGYYDAVAPTWDHAS 633 (874)
Q Consensus 555 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~~~~~~~~~~ 633 (874)
... .....|..+..++.+....+.+. ...|..+.+|+.+.+.++ ++ .++. ++.
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~-------------------- 317 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFE-------------------- 317 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTT--------------------
T ss_pred cce-eeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhc--------------------
Confidence 443 44556666777776666554432 234566666666665433 21 1110 000
Q ss_pred CCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhh
Q 042603 634 APALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 713 (874)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 713 (874)
.+++|+.+++..+ ++.+-..+|.++++|+.+++..| ++.+...+
T Consensus 318 ----------------------------------~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 318 ----------------------------------SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp ----------------------------------TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ----------------------------------CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 0235555555433 44344556666666666666655 55455566
Q ss_pred ccCCCCCCEEECCCCcCcccCChhhhcCCCCC
Q 042603 714 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLA 745 (874)
Q Consensus 714 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~ 745 (874)
|.++++|+.+++..+ ++ .+..+|.+.++|+
T Consensus 362 F~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 362 FQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp BTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 666666666666544 22 1233444444443
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=3.3e-14 Score=136.31 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=59.8
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
+|+.|++++|++++..+..|+.+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 55556666666655555556667777777777777776666666777777777777777776555556667777777777
Q ss_pred CCCCcccCC
Q 042603 751 YNNLSGKIP 759 (874)
Q Consensus 751 ~N~l~~~~p 759 (874)
+|++.+..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 777766554
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=2.7e-14 Score=135.89 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=99.1
Q ss_pred ceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEccCC
Q 042603 673 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVAYN 752 (874)
Q Consensus 673 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls~N 752 (874)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57999999997 7887775 89999999999999999999999999999999999999877777899999999999999
Q ss_pred CCcccCCCccccCCCCCcccccCCCCCCCCC
Q 042603 753 NLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 753 ~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
+|++.++..+..+++++.+++.+||+.|.|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9998888778899999999999999999654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=9e-16 Score=150.18 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=117.4
Q ss_pred hhcCCCCcEEEccCccCCCCCch------hhcCCCCCcEEEccCccCcccCCccccCCCCCCEEEccCCcCCCCCCchhh
Q 042603 540 IHYYPYLVTLDLSYNRLHGSIPN------WIDKLPQLSYILLANNYIEGEIPVQLCQLKEVRLIDLSHNNLSGHIPPCLV 613 (874)
Q Consensus 540 ~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 613 (874)
+...+.++.++++.+.+.+..|. .+..+++|++|++++|++.+ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45566777777777777777665 78888888888888888876 55 7778888888888888886 4554433
Q ss_pred ccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCcccccc
Q 042603 614 NTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYL 693 (874)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 693 (874)
. +++|+.|++++|++++ +| .++.+
T Consensus 91 ~------------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 91 V------------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp H------------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred c------------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccC
Confidence 2 2478888888888885 44 68888
Q ss_pred ccCCeEecCCcccccchh-hhccCCCCCCEEECCCCcCcccCChh----------hhcCCCCCeEEccCCCCc
Q 042603 694 TRIRALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQ----------LIVLNTLAVFRVAYNNLS 755 (874)
Q Consensus 694 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~l~ls~N~l~ 755 (874)
++|++|+|++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|+.|| +|.++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 889999999999886544 57888888999999999888776653 77788888776 55544
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=8.4e-13 Score=144.22 Aligned_cols=311 Identities=13% Similarity=0.080 Sum_probs=219.4
Q ss_pred hccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCC
Q 042603 273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP 352 (874)
Q Consensus 273 ~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 352 (874)
.+.+|.+|+.+.+..+ +. .++...|.+|++|+.+++.++ +..+...+|.++.+|+.+.+..+ +. .+....|....
T Consensus 66 AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTCC
T ss_pred HhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeeccc
Confidence 4556777777777643 43 566666778888888888654 56666677888888888777654 22 45555555443
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQL 432 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 432 (874)
+....+... .......+|.++++|+.+.+.++. . .++...+.++.+|+.+.+..+ ++......|.++..|+.+.+
T Consensus 141 -~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 141 -FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp -CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred -ccccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 333333222 223445678888899998887653 3 577777778888888888766 55566677778888888887
Q ss_pred cCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCccc
Q 042603 433 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGT 512 (874)
Q Consensus 433 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 512 (874)
..+... +......+.+|+.+.+.... .......+..+..++.+.+..+... .....|..+..++.+....+.+.
T Consensus 216 ~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 216 PNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred CCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 766432 22334455778888876543 3244567788888998888876543 56677888888888887765432
Q ss_pred CCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCccccCCC
Q 042603 513 LPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLCQLK 592 (874)
Q Consensus 513 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 592 (874)
...+..+.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+++
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 112334788999998754 77788889999999999999754 66566788999999999999876 7667778899999
Q ss_pred CCCEEEccCC
Q 042603 593 EVRLIDLSHN 602 (874)
Q Consensus 593 ~L~~L~Ls~N 602 (874)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 9999988654
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.9e-13 Score=128.29 Aligned_cols=90 Identities=24% Similarity=0.224 Sum_probs=84.6
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
+.++.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 47889999999999988999999999999999999999988888999999999999999999888888999999999999
Q ss_pred cCCCCcccCC
Q 042603 750 AYNNLSGKIP 759 (874)
Q Consensus 750 s~N~l~~~~p 759 (874)
++|++.+..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987655
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.2e-13 Score=130.25 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=52.5
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcccccchhh--hccCCCCCCEEECCCCcCcccCCh----hhhcCCCC
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT--TFSNLKQIESLDLSYNLLHGKIPP----QLIVLNTL 744 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~----~l~~l~~L 744 (874)
+|+.|++++|.+++..|..++.+++|++|+|++|+++. +|. .+..+++|+.|++++|+++. +|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcc
Confidence 55556666666654444444666777777777777753 443 66677777777777777763 344 36677777
Q ss_pred CeEEccCCCCc
Q 042603 745 AVFRVAYNNLS 755 (874)
Q Consensus 745 ~~l~ls~N~l~ 755 (874)
+.|++++|.+.
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 77777777654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.4e-15 Score=147.11 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=127.8
Q ss_pred hcCCCCCcEEEccCccCcccCCc------cccCCCCCCEEEccCCcCCCCCCchhhccccccccccCCCCCccccCCCCc
Q 042603 564 IDKLPQLSYILLANNYIEGEIPV------QLCQLKEVRLIDLSHNNLSGHIPPCLVNTALSEGYYDAVAPTWDHASAPAL 637 (874)
Q Consensus 564 ~~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (874)
+...+.++.++++.+.+.+..|. .+..+++|+.|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45567888888999999888877 89999999999999999985 55 4433
Q ss_pred ccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCC
Q 042603 638 SYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL 717 (874)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 717 (874)
+++|+.|++++|.++ .+|..+..+++|++|+|++|++++ +| .+..+
T Consensus 69 -------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 69 -------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp -------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred -------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 358999999999999 688888889999999999999997 45 68999
Q ss_pred CCCCEEECCCCcCcccCC-hhhhcCCCCCeEEccCCCCcccCCCc----------cccCCCCCcccccCCC
Q 042603 718 KQIESLDLSYNLLHGKIP-PQLIVLNTLAVFRVAYNNLSGKIPDR----------VAQFSTFEEDSYEGNP 777 (874)
Q Consensus 718 ~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~----------~~~~~~l~~~~~~gNp 777 (874)
++|+.|++++|++++..+ +.+..+++|+.|++++|++++.+|.. +..++.++.++ |||
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 999999999999996543 57899999999999999999887752 45566666554 554
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=4.6e-13 Score=128.07 Aligned_cols=130 Identities=20% Similarity=0.257 Sum_probs=81.8
Q ss_pred cccCCeeecCCCcccccCCccccCCCCCCEEECcCCcCcccCCCCCCCCcccEEEeeCcccCccchhhhhcCCCCcEEEc
Q 042603 472 LLALQDIIMPNNNLEGPIPNEFCQLDCLKVLDLSNNSIFGTLPSCLSLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDL 551 (874)
Q Consensus 472 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 551 (874)
+.+|+.|++++|.+.. ++......++|+.|++++|++++. +....+++|+.|++++|+++++.+..+..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3344444444444442 222122222566666666666543 44444666677777777776666666677788888888
Q ss_pred cCccCCCCCch--hhcCCCCCcEEEccCccCcccCCc----cccCCCCCCEEEccCCcCC
Q 042603 552 SYNRLHGSIPN--WIDKLPQLSYILLANNYIEGEIPV----QLCQLKEVRLIDLSHNNLS 605 (874)
Q Consensus 552 s~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~Ls~N~l~ 605 (874)
++|+++ .+|. .+..+++|+.|++++|++. ..|. .+..+++|+.||+++|...
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888876 3454 6777888888888888887 3444 3777888888888888764
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=7.3e-13 Score=125.90 Aligned_cols=90 Identities=23% Similarity=0.228 Sum_probs=83.6
Q ss_pred cCcceEEcCCCcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEc
Q 042603 670 TSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRV 749 (874)
Q Consensus 670 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~l 749 (874)
+.++.|+|++|+|++..|..|+.+++|++|+|++|+|+++.+..|.++++|++|||++|+|++..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 47889999999999988999999999999999999999888888999999999999999999877777999999999999
Q ss_pred cCCCCcccCC
Q 042603 750 AYNNLSGKIP 759 (874)
Q Consensus 750 s~N~l~~~~p 759 (874)
++|++....+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999987654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=8.1e-13 Score=141.93 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=98.1
Q ss_pred ceEEcCCC-cccccCCccccccccCCeEecCC-cccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEEcc
Q 042603 673 SGIDLSCN-KLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFRVA 750 (874)
Q Consensus 673 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ls 750 (874)
..++++++ +++ .+|. ++.+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35789998 898 5888 99999999999996 99999988999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 751 YNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 751 ~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
+|+|++.+|..+..+. ++.+++.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999988887666555 89999999999998864
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=5.1e-11 Score=130.02 Aligned_cols=309 Identities=12% Similarity=0.081 Sum_probs=162.1
Q ss_pred CCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCc---ccccccCCccCCCcccEEEccCCcCCccCChhhhcCCCCCc
Q 042603 279 DLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNS---LFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLPGLM 355 (874)
Q Consensus 279 ~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 355 (874)
.|+.+.+... ++ .+....|.+|++|+.+.+..+. ++.+...+|..+.+|+.+.+..+ ++ .++...|..+.+|+
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCC
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhcccc
Confidence 4677766543 33 4555556677777777776553 55555666777777777666554 22 55666666666777
Q ss_pred EEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCcccccCCccccCCCCCCeEEccCC
Q 042603 356 HLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGHIFSEKFNLTNLKRLQLDGN 435 (874)
Q Consensus 356 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 435 (874)
.+.+..+ +..+...+|..+.+|+.+.+..+ ++ .+....+. ...|+.+.+..+- .......+..+.+++......+
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCS
T ss_pred cccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcc-cccccchhhhccccceeccccc
Confidence 7777543 33355556777777777777654 33 45555553 3456666665442 2234455556666666655544
Q ss_pred cCcccCCcccc-------------ccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCCEE
Q 042603 436 KFIGEIPESLS-------------KCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLKVL 502 (874)
Q Consensus 436 ~l~~~~~~~~~-------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 502 (874)
.........+. ....+..+.+.. .+......+|.++..|+.+.+.++... ....+|.+++.|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i 293 (394)
T 4gt6_A 216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDI 293 (394)
T ss_dssp SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEE
T ss_pred ccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccc
Confidence 33211111111 111222222221 122223345666666666666544332 444556666666666
Q ss_pred ECcCCcCcccCCCCCC-CCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCc
Q 042603 503 DLSNNSIFGTLPSCLS-LGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIE 581 (874)
Q Consensus 503 ~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 581 (874)
.+. +.+.......+. +.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.+|++|+.+.+.++...
T Consensus 294 ~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 294 EFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp ECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred cCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 664 333333333333 566666666543 55555666666666666666543 44444556666666666666665433
Q ss_pred ccCCccccCCCCCCEEEccCCcC
Q 042603 582 GEIPVQLCQLKEVRLIDLSHNNL 604 (874)
Q Consensus 582 ~~~~~~~~~l~~L~~L~Ls~N~l 604 (874)
. ..+.....|+.+.+..|.+
T Consensus 371 ~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 W---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp H---HTCBCCCCC----------
T ss_pred h---hhhhccCCCCEEEeCCCCE
Confidence 1 2455556666665555443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=4.4e-13 Score=144.06 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=23.2
Q ss_pred cccccccCCeEecCCcccccc----hhhhccCCCCCCEEECCCCcCcccCChh
Q 042603 689 QIGYLTRIRALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHGKIPPQ 737 (874)
Q Consensus 689 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 737 (874)
.+...+.|+.|+|++|.|++. ++..+...++|++|||++|.|+..-...
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 344444555555555555532 2233334455555555555555433333
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=2.5e-10 Score=124.61 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=107.4
Q ss_pred cCChhhhcCCC-CCcEEEccCCcCCcccchhccCCCCcCEEEcccCc---CCCCchhHHHhcCCCCCEEEcccCcccccC
Q 042603 342 HIPVEIGTYLP-GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ---LTGAIPERMAMGCFSLEILALSNNTLQGHI 417 (874)
Q Consensus 342 ~i~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 417 (874)
.|+...|..+. .|+.+.+..+ ++.+-..+|.++++|+.+.+..|. ++ .++...|.+|.+|+.+.+..+ ++...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence 45556665443 5888888754 666777888899999999888764 55 677777777888887776654 45555
Q ss_pred CccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCC
Q 042603 418 FSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLD 497 (874)
Q Consensus 418 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 497 (874)
...|..+.+|+.+.+..+ +......+|..|..|+.+.+..+ +......+|.. ..|+.+.+..+-. .....+|.++.
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCT
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhcc
Confidence 667778888888888654 34355567778888888887765 33233445543 4677777765433 24455677777
Q ss_pred CCCEEECcCCcC
Q 042603 498 CLKVLDLSNNSI 509 (874)
Q Consensus 498 ~L~~L~L~~n~l 509 (874)
.++......+..
T Consensus 206 ~l~~~~~~~~~~ 217 (394)
T 4gt6_A 206 ALSTITSDSESY 217 (394)
T ss_dssp TCCEEEECCSSS
T ss_pred ccceeccccccc
Confidence 777776655443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=5.2e-13 Score=143.49 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCCCEEEccCCccccccc---Ccccc-CCCCCcEEECCCccccccchhHHHHHhcCCCCCEEEccccCCCCCcc--cccc
Q 042603 30 SSLKYLSMRGCVLKGALH---GQDFH-EFKNLEHLVMDRMLVEVDTSFLQIVSESMASLRILSLSYSRLNKNTI--LDQG 103 (874)
Q Consensus 30 ~~L~~L~Ls~~~~~~~~~---~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~ 103 (874)
++|++|+|++|.+++... ...+. ..++|++|++++|.+. ......+...+++|++|+|++|.++.... +...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 456666666666553221 01111 2256666666666543 11122223344566666666666654211 1111
Q ss_pred c-cCCCCCcEEEcCCCCCCCc----chhcccCCCCCCEEEccCCcCCCC----CcccccCCCCCCEEEccCCcCCCC---
Q 042603 104 L-CELVHLQELYIRDNDLRDS----LLWCLANMTSLQVLNVASNQLTGN----FPPGFCELVLLRELYIDNNDLRGS--- 171 (874)
Q Consensus 104 l-~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~--- 171 (874)
+ ...++|++|++++|.+++. ++..+..+++|++|+|++|.+... ++..+...++|++|+|++|.++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2 2356677777777766542 233345566677777777766532 233455566777777777776542
Q ss_pred -ccccccCCCCCCEEEcccccccc
Q 042603 172 -LPLCLANLTSLRVLDVSYNQLTE 194 (874)
Q Consensus 172 -~~~~~~~l~~L~~L~L~~n~l~~ 194 (874)
++..+...++|++|||++|.+++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 23344456777777777777654
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.4e-11 Score=132.22 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=89.7
Q ss_pred cCcceEEcCC-CcccccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcccCChhhhcCCCCCeEE
Q 042603 670 TSMSGIDLSC-NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLAVFR 748 (874)
Q Consensus 670 ~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~l~ 748 (874)
++|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..+..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 4899999996 999988889999999999999999999999999999999999999999999987777777776 99999
Q ss_pred ccCCCCcccCCC-ccccCCCCCcccccCCCCCCCCC
Q 042603 749 VAYNNLSGKIPD-RVAQFSTFEEDSYEGNPFLCGLP 783 (874)
Q Consensus 749 ls~N~l~~~~p~-~~~~~~~l~~~~~~gNp~~C~~~ 783 (874)
+++|++.....- .+.++.......+..+...|..|
T Consensus 110 l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 110 LSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 999999754321 11111112223344566667543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=7.9e-09 Score=112.11 Aligned_cols=289 Identities=11% Similarity=0.041 Sum_probs=135.3
Q ss_pred hccCCCCCCEEEcCCCCCcccCCcchhcCCCCCCEEEccCCcccccccCCccCCCcccEEEccCCcCCccCChhhhcCCC
Q 042603 273 FLYHQHDLNNADLSHLNLSGEFPNWLPENNTDLKTLLLANNSLFGSFRMPIHCLQKLATLDVSNNFFLGHIPVEIGTYLP 352 (874)
Q Consensus 273 ~l~~~~~L~~L~l~~n~l~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 352 (874)
|.....+++.+.+.. .++ .++...|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +. .++...|.. .
T Consensus 41 ~~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-T 113 (379)
T ss_dssp TGGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-C
T ss_pred ccccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-C
Confidence 344445555555543 222 455555566666666666543 555555556555 4555555443 22 455555543 3
Q ss_pred CCcEEEccCCcCCcccchhccCCCCcCEEEcccCcCCCCchhHHHhcCCCCCEEEcccCccccc------------CCcc
Q 042603 353 GLMHLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGAIPERMAMGCFSLEILALSNNTLQGH------------IFSE 420 (874)
Q Consensus 353 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~~ 420 (874)
+|+.+.+..+ +......+|.++ +++.+.+..+ ++ .+....+..+..++...+..+..... ....
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred CcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecc
Confidence 5666666544 222333344433 4555444332 22 33334444455555555544322110 1111
Q ss_pred ccCCCCCCeEEccCCcCcccCCccccccCCCCeEEccCCcCCCCCchhhhccccCCeeecCCCcccccCCccccCCCCCC
Q 042603 421 KFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGKIPRWLGSLLALQDIIMPNNNLEGPIPNEFCQLDCLK 500 (874)
Q Consensus 421 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 500 (874)
+.....+..+.+.... .......+..+..++.+.+..+ +......++.++..|+.+.+..+ ++.+...+|.++.+|+
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 2233334444333322 1123334445555555555443 22233344555555666555543 3334444555555566
Q ss_pred EEECcCCcCcccCCCCC-CCCcccEEEeeCcccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603 501 VLDLSNNSIFGTLPSCL-SLGSIEQVHLSKNKIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577 (874)
Q Consensus 501 ~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 577 (874)
.+.+..+ +.......+ .+.+|+.+.+.++.++.+...+|.+|++|+.+++..+ ++.+...+|.+|++|+.+.+..
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5555432 222222222 2455555555555555555555555555555555433 3333344555555555555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.04 E-value=1.7e-08 Score=109.43 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=61.1
Q ss_pred hcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 042603 79 ESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQLTGNFPPGFCELVLL 158 (874)
Q Consensus 79 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 158 (874)
....+|+.+.+... ++.+ -..+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......+|... +|
T Consensus 43 ~~~~~i~~v~ip~~-vt~I--g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSI--GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGCSEEEECTT-EEEE--CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccCCEEEEeCCC-ccCh--HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 34445555555422 2221 1245666666666666543 454555566665 4666555433 332333344433 56
Q ss_pred CEEEccCCcCCCCccccccCCCCCCEEEcccccccccCCccccCCCCCCCEEEcccc
Q 042603 159 RELYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSPLMHLTSIEELILSNN 215 (874)
Q Consensus 159 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 215 (874)
+.+.+..+ +..+...+|.++ +|+.+.+..+ ++ .+....+..+.+++...+..+
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTT
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccc
Confidence 66666554 222333444443 4555544433 22 133335566666666665543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=1.2e-08 Score=108.41 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=28.7
Q ss_pred cccCCeEecCCcccccchhhhcc---CCCCCCEEECCCCcCccc----CChhhhcCCCCCeEEccCCCCc
Q 042603 693 LTRIRALNLSHNNLTGTIPTTFS---NLKQIESLDLSYNLLHGK----IPPQLIVLNTLAVFRVAYNNLS 755 (874)
Q Consensus 693 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~l~ls~N~l~ 755 (874)
+++|++|+|++|.+++..+..+. .+++|++|||+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34555555555555433322222 244555555555555442 2222334455555555555443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1e-08 Score=108.91 Aligned_cols=165 Identities=13% Similarity=0.165 Sum_probs=104.5
Q ss_pred chhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccCccCcccCCcccc--CCCCCCEEEccC--CcCCCCC-Cc
Q 042603 536 LESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLANNYIEGEIPVQLC--QLKEVRLIDLSH--NNLSGHI-PP 610 (874)
Q Consensus 536 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~~-p~ 610 (874)
+...+..+|+|+.|++++|.-. .++. + .+++|+.|.+..|.+.......+. .+++|+.|+|+. |...+.. ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3456677788888888877311 2232 3 378888888888887654333343 688899988863 2211110 01
Q ss_pred hhhccccccccccCCCCCccccCCCCcccCCCCCCCCCccceEEEEecCcccccccccccCcceEEcCCCcccccCCccc
Q 042603 611 CLVNTALSEGYYDAVAPTWDHASAPALSYFPPNGSPMGKEETVQFTTKNMSYYYRGRILTSMSGIDLSCNKLTGEIPTQI 690 (874)
Q Consensus 611 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~ 690 (874)
.+... ..+..+++|+.|+|++|.+++..+..+
T Consensus 241 ~l~~~------------------------------------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 241 VFRPL------------------------------------------------FSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp GTGGG------------------------------------------------SCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred HHHHH------------------------------------------------HhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 11100 000124689999999999875444333
Q ss_pred c---ccccCCeEecCCcccccch----hhhccCCCCCCEEECCCCcCcccCChhhhc-CCCCCeEEccCCC
Q 042603 691 G---YLTRIRALNLSHNNLTGTI----PTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLAVFRVAYNN 753 (874)
Q Consensus 691 ~---~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~-l~~L~~l~ls~N~ 753 (874)
. .+++|++|+|+.|.+++.- +..+..+++|+.|+|++|.|+...-..+.. + ...+++++++
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3 5789999999999998753 444456799999999999988654444443 2 3456676665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=5.9e-08 Score=92.81 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=61.0
Q ss_pred hhhhccCCCCCCEEEccCC-ccccccc---CccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCCC
Q 042603 22 LLQSIASFSSLKYLSMRGC-VLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLNK 96 (874)
Q Consensus 22 ~~~~l~~l~~L~~L~Ls~~-~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~~ 96 (874)
+...+...++|++|+|++| .+.+.-. ...+...++|++|++++|.+. .....+...+...+.|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3455666677777777777 6653211 223445566666666666654 2222333344555566666666666543
Q ss_pred Cc--cccccccCCCCCcEEEc--CCCCCCCcc----hhcccCCCCCCEEEccCCcC
Q 042603 97 NT--ILDQGLCELVHLQELYI--RDNDLRDSL----LWCLANMTSLQVLNVASNQL 144 (874)
Q Consensus 97 ~~--~~~~~l~~l~~L~~L~L--~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i 144 (874)
.. .+...+...++|++|++ ++|.|.... ...+...++|++|+|++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 21 12234444555555555 445554321 12233334444444444443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=7.8e-08 Score=91.97 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=93.9
Q ss_pred CCCCCCCEEecCCC-CCCC---CchhhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-ccchh
Q 042603 2 HNFTNLEELILVES-DLHV---SQLLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSF 73 (874)
Q Consensus 2 ~~l~~L~~L~Ls~~-~~~~---~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~ 73 (874)
...+.|++|+|++| .+.. ..+.+.+...++|++|+|++|.+.+.-. ...+...++|++|++++|.+. .....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45689999999999 8842 3456778889999999999999875421 345567789999999999987 33444
Q ss_pred HHHHHhcCCCCCEEEc--cccCCCCCcc--ccccccCCCCCcEEEcCCCCCC
Q 042603 74 LQIVSESMASLRILSL--SYSRLNKNTI--LDQGLCELVHLQELYIRDNDLR 121 (874)
Q Consensus 74 ~~~~~~~l~~L~~L~L--s~n~~~~~~~--~~~~l~~l~~L~~L~L~~n~i~ 121 (874)
+...+...+.|++|+| ++|.+..... +...+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5566788899999999 8899876432 3456677899999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.6e-07 Score=94.15 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=24.0
Q ss_pred HhcCCCCCEEEccccCCCCCccccccccCCCCCcEEEcCCCCCCC
Q 042603 78 SESMASLRILSLSYSRLNKNTILDQGLCELVHLQELYIRDNDLRD 122 (874)
Q Consensus 78 ~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 122 (874)
..++++|+.|+|++|+++....++..+..+++|+.|+|++|+|++
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 345566666666666665533333344455555555555555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=4.9e-07 Score=90.63 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=32.5
Q ss_pred ccccCCeEecCCccccc--chhhhccCCCCCCEEECCCCcCcccCChhhhcCC--CCCeEEccCCCCcccCC
Q 042603 692 YLTRIRALNLSHNNLTG--TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN--TLAVFRVAYNNLSGKIP 759 (874)
Q Consensus 692 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~l~ls~N~l~~~~p 759 (874)
++++|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. +.+..+. +|+.|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34455555555555554 2234444555555555555555543 2223332 55555555555555444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=3.1e-06 Score=78.31 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=43.2
Q ss_pred CCCcEEEcCCCCCCCcchhcccCCCCCCEEEccCCc-CCCCCcccccCC----CCCCEEEccCCc-CCCCccccccCCCC
Q 042603 108 VHLQELYIRDNDLRDSLLWCLANMTSLQVLNVASNQ-LTGNFPPGFCEL----VLLRELYIDNND-LRGSLPLCLANLTS 181 (874)
Q Consensus 108 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 181 (874)
..|+.||+++|.|++.-...+.++++|++|+|++|. ++...-..+..+ ++|++|++++|. ++...-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666555544555566666666666653 443222223332 245666665553 44333334455555
Q ss_pred CCEEEccccc
Q 042603 182 LRVLDVSYNQ 191 (874)
Q Consensus 182 L~~L~L~~n~ 191 (874)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=1.9e-05 Score=73.10 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=69.5
Q ss_pred CcceEEcCCCcccccCCccccccccCCeEecCCcc-cccchhhhccCC----CCCCEEECCCCc-CcccCChhhhcCCCC
Q 042603 671 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN-LTGTIPTTFSNL----KQIESLDLSYNL-LHGKIPPQLIVLNTL 744 (874)
Q Consensus 671 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~LdLs~N~-l~~~~p~~l~~l~~L 744 (874)
.|++||++++.++..--..+..+++|+.|+|++|. +++.--..++.+ ++|++|||++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 68999999999987767778899999999999995 887666667765 479999999985 876555677889999
Q ss_pred CeEEccCCC
Q 042603 745 AVFRVAYNN 753 (874)
Q Consensus 745 ~~l~ls~N~ 753 (874)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999885
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.60 E-value=6.2e-05 Score=66.51 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=25.9
Q ss_pred CCeEEccCCCCcccCCCccccCCCCCcccccCCCCCCCCCC
Q 042603 744 LAVFRVAYNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 784 (874)
Q Consensus 744 L~~l~ls~N~l~~~~p~~~~~~~~l~~~~~~gNp~~C~~~l 784 (874)
|+.|+|++|+|+...+..|..+..++.+++.||||.|+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 45555555555555555555566666677888999996543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=0.00012 Score=69.02 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=31.4
Q ss_pred ccCCCCCCEEEccCC-cccccc---cCccccCCCCCcEEECCCcccc-ccchhHHHHHhcCCCCCEEEccccCCC
Q 042603 26 IASFSSLKYLSMRGC-VLKGAL---HGQDFHEFKNLEHLVMDRMLVE-VDTSFLQIVSESMASLRILSLSYSRLN 95 (874)
Q Consensus 26 l~~l~~L~~L~Ls~~-~~~~~~---~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls~n~~~ 95 (874)
+..-+.|++|+|+++ .+.+.- ..+++..-+.|+.|+|++|.+. .....+..++..-+.|++|+|+.|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344455555555553 443210 0223334445555555555544 222333334444455555555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=0.0002 Score=67.56 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=80.4
Q ss_pred CCCCCEEecCCC-CCC---CCchhhhccCCCCCCEEEccCCccccccc---CccccCCCCCcEEECCCcccc-ccchhHH
Q 042603 4 FTNLEELILVES-DLH---VSQLLQSIASFSSLKYLSMRGCVLKGALH---GQDFHEFKNLEHLVMDRMLVE-VDTSFLQ 75 (874)
Q Consensus 4 l~~L~~L~Ls~~-~~~---~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~-~~~~~~~ 75 (874)
=+.|++|+|+++ .+. ...+.+.+..-+.|++|+|++|.+.+.-. .+++..-+.|++|+|++|.+. .....+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 468999999986 774 23467888888999999999999874432 344557789999999999987 3344455
Q ss_pred HHHhcCCCCCEEEccccCC---CCCc--cccccccCCCCCcEEEcCCCC
Q 042603 76 IVSESMASLRILSLSYSRL---NKNT--ILDQGLCELVHLQELYIRDND 119 (874)
Q Consensus 76 ~~~~~l~~L~~L~Ls~n~~---~~~~--~~~~~l~~l~~L~~L~L~~n~ 119 (874)
.++..-+.|++|+|+++.. .... .+.+.+..-+.|+.|+++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 5566677788888876532 2211 123345556667777776554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00039 Score=61.31 Aligned_cols=58 Identities=26% Similarity=0.299 Sum_probs=48.2
Q ss_pred ceEEcCCCccc-ccCCccccccccCCeEecCCcccccchhhhccCCCCCCEEECCCCcCcc
Q 042603 673 SGIDLSCNKLT-GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 732 (874)
Q Consensus 673 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 732 (874)
..++.++++++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36889999987 46776655 578999999999998888889999999999999998853
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.62 E-value=13 Score=30.15 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=27.2
Q ss_pred ccCccchhhhhcCCCCcEEEccCccCCCCCchhhcCCCCCcEEEccC
Q 042603 531 KIEGQLESIIHYYPYLVTLDLSYNRLHGSIPNWIDKLPQLSYILLAN 577 (874)
Q Consensus 531 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 577 (874)
.++.+...+|.+|++|+.+.+-.+ ++.+-..+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455555566677777777666654 3334455566666666665554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.05 E-value=39 Score=27.32 Aligned_cols=43 Identities=21% Similarity=0.079 Sum_probs=19.1
Q ss_pred cccCCccccCCCCCCeEEccCCcCcccCCccccccCCCCeEEcc
Q 042603 414 QGHIFSEKFNLTNLKRLQLDGNKFIGEIPESLSKCYLLGGLYLS 457 (874)
Q Consensus 414 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 457 (874)
+.+....|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3333444445555555554433 232333444444444444444
Done!