Query 042605
Match_columns 209
No_of_seqs 196 out of 1293
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 1.9E-22 4.1E-27 150.5 7.1 81 2-82 17-106 (106)
2 PF01657 Stress-antifung: Salt 98.6 6.3E-08 1.4E-12 71.9 4.7 56 101-156 14-106 (106)
3 PF08693 SKG6: Transmembrane a 48.0 16 0.00034 22.4 1.8 13 196-208 10-22 (40)
4 KOG2675 Adenylate cyclase-asso 20.3 1E+02 0.0022 28.8 3.0 11 44-54 56-66 (480)
5 PF04478 Mid2: Mid2 like cell 19.1 1.7E+02 0.0036 23.3 3.6 17 191-207 42-58 (154)
6 PF06697 DUF1191: Protein of u 18.4 91 0.002 27.2 2.2 17 191-207 207-223 (278)
7 PHA00008 J DNA packaging prote 13.6 1E+02 0.0022 16.8 0.8 12 61-72 10-21 (26)
8 PHA03211 serine/threonine kina 11.3 2E+02 0.0043 26.6 2.6 26 155-180 37-62 (461)
9 PF01213 CAP_N: Adenylate cycl 11.0 84 0.0018 27.9 0.0 15 169-183 231-245 (312)
10 PF07325 Curto_V2: Curtovirus 10.9 52 0.0011 24.6 -1.1 42 72-116 22-63 (126)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.87 E-value=1.9e-22 Score=150.48 Aligned_cols=81 Identities=36% Similarity=0.666 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHHHhccCCC--C-ccccccc------eEEEeecCCCChhhHHHHHHHHHHHHhhhCCCCceEEEEcce
Q 042605 2 FHQKQHLNLLLATLRSNTTHC--S-SDKFSEG------LRLFLCCGDVSTESCKDCVNFATSHITQLCPVRKETVIWYSE 72 (209)
Q Consensus 2 s~y~~nl~~ll~~L~s~a~~~--~-f~~~s~G------Ygl~qCr~Dls~~~C~~Cl~~a~~~i~~~C~~~~~a~i~~~~ 72 (209)
++|++||+.||..|..+++.. . |++++.| |||+||++|+++++|..||+.|+..+.+.|+.+++|+||++.
T Consensus 17 ~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~~ 96 (106)
T PF01657_consen 17 STFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYDS 96 (106)
T ss_dssp -THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEESS
T ss_pred chHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECCC
Confidence 569999999999999997654 3 9888654 999999999999999999999999999999999999999999
Q ss_pred eeEEEccccc
Q 042605 73 CLLRYSNVSF 82 (209)
Q Consensus 73 C~lRYs~~~F 82 (209)
|+|||++++|
T Consensus 97 C~lRY~~~~F 106 (106)
T PF01657_consen 97 CFLRYENYPF 106 (106)
T ss_dssp EEEEEESS--
T ss_pred EEEEEECCCC
Confidence 9999999988
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=98.59 E-value=6.3e-08 Score=71.93 Aligned_cols=56 Identities=30% Similarity=0.461 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhc-C--CC-----------------------------CcHHHHHHhhhh-c-CCCCC---
Q 042605 101 TSRRLFEQQVWSLMNEALNRAL-S--TT-----------------------------KCLGQQTKITQT-A-RRMSA--- 143 (209)
Q Consensus 101 ~~~~~f~~~~~~ll~~l~~~a~-~--~~-----------------------------~CL~~~~~~~~~-c-~~~Gg--- 143 (209)
++...|.+.+.+||..|+..|+ + .+ .||+.++.+++. | +++||
T Consensus 14 ~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~ 93 (106)
T PF01657_consen 14 TDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVW 93 (106)
T ss_dssp -TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEE
Confidence 3334499999999999999877 3 11 999999999998 5 88888
Q ss_pred CcceEEEEecCCC
Q 042605 144 VSSYNIRYELYPF 156 (209)
Q Consensus 144 ~~sC~~Rye~~~F 156 (209)
..+|+||||.|+|
T Consensus 94 ~~~C~lRY~~~~F 106 (106)
T PF01657_consen 94 YDSCFLRYENYPF 106 (106)
T ss_dssp ESSEEEEEESS--
T ss_pred CCCEEEEEECCCC
Confidence 9999999999998
No 3
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=48.02 E-value=16 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=9.7
Q ss_pred cceEEEEEEeccc
Q 042605 196 ATWIAIGTTIPTI 208 (209)
Q Consensus 196 ~~~~iiaivvp~v 208 (209)
+..|.+++++|++
T Consensus 10 ~vaIa~~VvVPV~ 22 (40)
T PF08693_consen 10 TVAIAVGVVVPVG 22 (40)
T ss_pred eEEEEEEEEechH
Confidence 4447789999984
No 4
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.30 E-value=1e+02 Score=28.77 Aligned_cols=11 Identities=0% Similarity=-0.278 Sum_probs=5.7
Q ss_pred hHHHHHHHHHH
Q 042605 44 SCKDCVNFATS 54 (209)
Q Consensus 44 ~C~~Cl~~a~~ 54 (209)
.|..||.....
T Consensus 56 ~i~~~l~~~~~ 66 (480)
T KOG2675|consen 56 LISEPLAEYLK 66 (480)
T ss_pred HHHhHHHHHHH
Confidence 35555555544
No 5
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=19.13 E-value=1.7e+02 Score=23.31 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=10.8
Q ss_pred CCCCccceEEEEEEecc
Q 042605 191 GKGTKATWIAIGTTIPT 207 (209)
Q Consensus 191 g~~~~~~~~iiaivvp~ 207 (209)
|-..+.+.|||++||.+
T Consensus 42 GlS~knknIVIGvVVGV 58 (154)
T PF04478_consen 42 GLSSKNKNIVIGVVVGV 58 (154)
T ss_pred CCCcCCccEEEEEEecc
Confidence 44444445888888765
No 6
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=18.44 E-value=91 Score=27.23 Aligned_cols=17 Identities=18% Similarity=-0.069 Sum_probs=9.7
Q ss_pred CCCCccceEEEEEEecc
Q 042605 191 GKGTKATWIAIGTTIPT 207 (209)
Q Consensus 191 g~~~~~~~~iiaivvp~ 207 (209)
+++.++|++|+.+++.+
T Consensus 207 ~~~~~~W~iv~g~~~G~ 223 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGV 223 (278)
T ss_pred CCcceeEEEEEEehHHH
Confidence 34555665666666554
No 7
>PHA00008 J DNA packaging protein
Probab=13.56 E-value=1e+02 Score=16.81 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=8.9
Q ss_pred CCCceEEEEcce
Q 042605 61 PVRKETVIWYSE 72 (209)
Q Consensus 61 ~~~~~a~i~~~~ 72 (209)
..++||+.||.+
T Consensus 10 ~r~KGARLWYVG 21 (26)
T PHA00008 10 SRRKGARLWYVG 21 (26)
T ss_pred CccCceEEEEec
Confidence 346799999864
No 8
>PHA03211 serine/threonine kinase US3; Provisional
Probab=11.31 E-value=2e+02 Score=26.56 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 042605 155 PFYNDTLIASPTSAPAQAPSPVVLPL 180 (209)
Q Consensus 155 ~Fy~~~~~~~~~~~~~~~~~p~~~~~ 180 (209)
+||+.......+|||+++||+.+.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (461)
T PHA03211 37 TFYNPPRGVCFPPPPEHDPPSPHGAR 62 (461)
T ss_pred CCCCCccccccCCCCCCCCCCCCCch
No 9
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=11.05 E-value=84 Score=27.86 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q 042605 169 PAQAPSPVVLPLPSP 183 (209)
Q Consensus 169 ~~~~~~p~~~~~~~~ 183 (209)
++|||||+|+|++.+
T Consensus 231 ~~PpPPppPpPP~~~ 245 (312)
T PF01213_consen 231 AAPPPPPPPPPPPAP 245 (312)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCccccc
No 10
>PF07325 Curto_V2: Curtovirus V2 protein; InterPro: IPR009931 This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process [].
Probab=10.93 E-value=52 Score=24.61 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred eeeEEEcccccccCCCCCCeEEeecCCCCCCHHHHHHHHHHHHHH
Q 042605 72 ECLLRYSNVSFFSAMDTKPFFYTSSTQNSTSRRLFEQQVWSLMNE 116 (209)
Q Consensus 72 ~C~lRYs~~~F~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ll~~ 116 (209)
+|+|||-..-+++.......+.+-.++..- +|...+..||.+
T Consensus 22 SCflrYNkwCilGi~~eie~LtlEeGE~FL---qFQKevKKLLk~ 63 (126)
T PF07325_consen 22 SCFLRYNKWCILGIHPEIEPLTLEEGEVFL---QFQKEVKKLLKR 63 (126)
T ss_pred HHHHhhchhheecccccccccchhhhHHHH---HHHHHHHHHHHH
Done!