Query 042605
Match_columns 209
No_of_seqs 196 out of 1293
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 13:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042605.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042605hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cl4a_ g.40.1.1 (A:) Nucleoca 7.0 14 0.001 19.2 -2.1 21 57-77 2-22 (32)
2 d1g25a_ g.44.1.1 (A:) TFIIH Ma 6.1 69 0.005 18.4 0.5 19 44-62 30-48 (65)
3 d1weoa_ g.44.1.1 (A:) Cellulos 5.5 51 0.0037 21.0 -0.4 30 41-80 42-71 (93)
4 d1rmda2 g.44.1.1 (A:1-86) V(D) 4.8 1.1E+02 0.0084 18.7 1.0 19 44-62 45-63 (86)
5 d1dsva_ g.40.1.1 (A:) Nucleic 4.5 28 0.0021 17.9 -1.8 21 58-78 3-23 (31)
6 d1f32a_ d.62.1.1 (A:) Pepsin i 4.4 1.8E+02 0.013 19.9 1.9 20 57-76 62-81 (147)
7 d1z5ye1 c.47.1.10 (E:49-184) T 4.3 3.9E+02 0.028 16.5 3.7 20 103-122 117-136 (136)
8 d2cupa3 g.39.1.3 (A:8-34) Four 3.6 1.4E+02 0.01 14.3 0.5 8 67-74 20-27 (27)
9 d1no1a_ a.179.1.1 (A:) Repliso 3.3 3.1E+02 0.022 15.4 1.9 13 110-122 42-54 (67)
10 d1iiea_ a.109.1.1 (A:) Class I 3.2 2.6E+02 0.019 16.9 1.6 8 4-11 29-36 (75)
No 1
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=7.01 E-value=14 Score=19.21 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=16.4
Q ss_pred hhhCCCCceEEEEcceeeEEE
Q 042605 57 TQLCPVRKETVIWYSECLLRY 77 (209)
Q Consensus 57 ~~~C~~~~~a~i~~~~C~lRY 77 (209)
+..||.=+.++.|..+|.-++
T Consensus 2 P~lCPrC~kG~HWa~~Crsk~ 22 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKSKT 22 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CccCccccCcchHHHHhhhhh
Confidence 467888888889998886554
No 2
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.07 E-value=69 Score=18.44 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHhhhCCC
Q 042605 44 SCKDCVNFATSHITQLCPV 62 (209)
Q Consensus 44 ~C~~Cl~~a~~~i~~~C~~ 62 (209)
-|..||......-...||.
T Consensus 30 fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 30 LCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp EEHHHHHHHHHTTSSSCTT
T ss_pred hhHHHHHHHhCcCcCCCCC
Confidence 4899999998766667884
No 3
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.54 E-value=51 Score=21.03 Aligned_cols=30 Identities=30% Similarity=0.778 Sum_probs=25.5
Q ss_pred ChhhHHHHHHHHHHHHhhhCCCCceEEEEcceeeEEEccc
Q 042605 41 STESCKDCVNFATSHITQLCPVRKETVIWYSECLLRYSNV 80 (209)
Q Consensus 41 s~~~C~~Cl~~a~~~i~~~C~~~~~a~i~~~~C~lRYs~~ 80 (209)
.-..|+.|..--..+-.+.|| +|-.||...
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~ 71 (93)
T d1weoa_ 42 GFPACRPCYEYERREGTQNCP----------QCKTRYKRL 71 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT----------TTCCCCCCC
T ss_pred CCccchHHHHHHHhccCccCc----------ccCChhhhh
Confidence 346799999999999999999 699999754
No 4
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.78 E-value=1.1e+02 Score=18.74 Aligned_cols=19 Identities=21% Similarity=0.579 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHhhhCCC
Q 042605 44 SCKDCVNFATSHITQLCPV 62 (209)
Q Consensus 44 ~C~~Cl~~a~~~i~~~C~~ 62 (209)
-|+.|+......-...||.
T Consensus 45 FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 45 FCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp EEHHHHHHHHHHTCSBCTT
T ss_pred hhHHHHHHHHhhCCCcCcc
Confidence 4899999998765557883
No 5
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=4.52 E-value=28 Score=17.86 Aligned_cols=21 Identities=38% Similarity=0.816 Sum_probs=16.9
Q ss_pred hhCCCCceEEEEcceeeEEEc
Q 042605 58 QLCPVRKETVIWYSECLLRYS 78 (209)
Q Consensus 58 ~~C~~~~~a~i~~~~C~lRYs 78 (209)
..||.=+.+..|..+|.-+++
T Consensus 3 ~lCPrC~kG~HWa~~Crsk~~ 23 (31)
T d1dsva_ 3 GLCPRCKKGYHWKSECKSKFD 23 (31)
T ss_dssp CBCTTTCSSBSCTTTCCCSEE
T ss_pred ccCccccCcchHHHHhhhhhc
Confidence 468888889999999977665
No 6
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=4.40 E-value=1.8e+02 Score=19.86 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=16.5
Q ss_pred hhhCCCCceEEEEcceeeEE
Q 042605 57 TQLCPVRKETVIWYSECLLR 76 (209)
Q Consensus 57 ~~~C~~~~~a~i~~~~C~lR 76 (209)
++-|....--..+.|+|+++
T Consensus 62 PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 62 PPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCcCcceEEEEeeeEEE
Confidence 45688877788889999998
No 7
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Probab=4.32 E-value=3.9e+02 Score=16.47 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 042605 103 RRLFEQQVWSLMNEALNRAL 122 (209)
Q Consensus 103 ~~~f~~~~~~ll~~l~~~a~ 122 (209)
...+.+.+.++|+++..+|+
T Consensus 117 ~~~l~~~i~~ll~kl~~ea~ 136 (136)
T d1z5ye1 117 PRVWEEEIKPLWEKYSKEAA 136 (136)
T ss_dssp HHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 46688889999999888774
No 8
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.56 E-value=1.4e+02 Score=14.32 Aligned_cols=8 Identities=25% Similarity=1.036 Sum_probs=4.4
Q ss_pred EEEcceee
Q 042605 67 VIWYSECL 74 (209)
Q Consensus 67 ~i~~~~C~ 74 (209)
+.|.+.||
T Consensus 20 r~wh~~cf 27 (27)
T d2cupa3 20 RFWHDTCF 27 (27)
T ss_dssp EEEETTTC
T ss_pred cccccccC
Confidence 45666664
No 9
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=3.26 E-value=3.1e+02 Score=15.43 Aligned_cols=13 Identities=23% Similarity=0.200 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhc
Q 042605 110 VWSLMNEALNRAL 122 (209)
Q Consensus 110 ~~~ll~~l~~~a~ 122 (209)
++++|++|.++|.
T Consensus 42 leeimnnltdyak 54 (67)
T d1no1a_ 42 LEEIMNNLTDYAK 54 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHH
Confidence 6788999998875
No 10
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.23 E-value=2.6e+02 Score=16.91 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 042605 4 QKQHLNLL 11 (209)
Q Consensus 4 y~~nl~~l 11 (209)
|..||+.|
T Consensus 29 f~~NLk~L 36 (75)
T d1iiea_ 29 FPENLRHL 36 (75)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344333
Done!