BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042606
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94C12|NDBAB_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B
OS=Arabidopsis thaliana GN=At3g18410 PE=2 SV=1
Length = 106
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 64/71 (90%)
Query: 1 HIVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRGIGWGKDGRHPSL 60
HIVREKWI IEKAKI+REK+KWCYR+EGVNH QKCRHLV QYL+STRG+GWGKD R SL
Sbjct: 36 HIVREKWIQIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISL 95
Query: 61 HGPKVEAVESE 71
HGPK EAVE+E
Sbjct: 96 HGPKPEAVEAE 106
>sp|Q9M9B4|NDBAA_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A
OS=Arabidopsis thaliana GN=At1g49140 PE=3 SV=1
Length = 107
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 62/72 (86%)
Query: 1 HIVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRGIGWGKDGRHPSL 60
HIVREKWI IEKAKI+REK+KWCYR+EGVNH QKCRHLV QYL++TRG+GWGKD R SL
Sbjct: 36 HIVREKWIHIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISL 95
Query: 61 HGPKVEAVESEE 72
HGPK AVE E
Sbjct: 96 HGPKPVAVEEAE 107
>sp|Q03015|NDUS6_NEUCR NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-12.3 PE=3 SV=2
Length = 104
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 2 IVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLE 44
I+RE+W+ + +++RE+L CY EGVNH++KC HL +YL+
Sbjct: 38 IIREQWVRVMMGRLVREELSKCYYREGVNHLEKCGHLRERYLQ 80
>sp|Q9DCS9|NDUBA_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 OS=Mus
musculus GN=Ndufb10 PE=1 SV=3
Length = 176
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 4 REKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRG 48
R+ +D E II+E+LK C + EG N+ Q C + Q+ + T+
Sbjct: 94 RDFKVDQEIMNIIQERLKACQQREGENYQQNCAKELEQFTKVTKA 138
>sp|Q02373|NDUBA_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 OS=Bos
taurus GN=NDUFB10 PE=1 SV=2
Length = 176
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 4 REKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRG 48
R+ +D E II+E+LK C + EG +H Q C + Q+ + +
Sbjct: 94 RDYKVDQEIVNIIQERLKACQQREGESHRQNCAKELEQFTQVVKA 138
>sp|O96000|NDUBA_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
OS=Homo sapiens GN=NDUFB10 PE=1 SV=3
Length = 172
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 4 REKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRG 48
R+ +D E I++++LK C + EG N+ Q C V Q+ + +
Sbjct: 88 RDYKVDQEIINIMQDRLKACQQREGQNYQQNCIKEVEQFTQVAKA 132
>sp|Q0MQF3|NDUBA_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 OS=Pan
troglodytes GN=NDUFB10 PE=2 SV=3
Length = 172
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 4 REKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRG 48
R+ +D E I++++LK C + EG N+ Q C V Q+ + +
Sbjct: 88 RDYKVDQEIINIMQDRLKACQQREGQNYQQNCIKEVEQFTQVAKA 132
>sp|P0CC02|NDUBA_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
OS=Pongo pygmaeus GN=NDUFB10 PE=2 SV=1
Length = 172
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 4 REKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRG 48
R+ +D E I++++LK C + EG N+ Q C V Q+ + +
Sbjct: 88 RDYKVDQEIINIMQDRLKACQQREGQNYQQNCIKEVEQFTQVAKA 132
>sp|Q0MQF2|NDUBA_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
OS=Gorilla gorilla gorilla GN=NDUFB10 PE=2 SV=3
Length = 172
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 4 REKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRG 48
R+ +D E I++++LK C + EG N+ Q C V Q+ + +
Sbjct: 88 RDYKVDQEIINIMQDRLKACQQREGQNYQQNCIKEVEQFTQVAKA 132
>sp|Q1HPL8|NDUBA_BOMMO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
OS=Bombyx mori PE=1 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 4 REKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQY 42
R++ +D E I+R++ + C E +H KCR L ++Y
Sbjct: 76 RDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKY 114
>sp|Q562C4|MET7B_RAT Methyltransferase-like protein 7B OS=Rattus norvegicus GN=Mettl7b
PE=1 SV=1
Length = 244
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 1 HIVREKWIDIEKAKIIREKLKW 22
H+ RE W DIEKA+ +L+W
Sbjct: 203 HLTRETWKDIEKAQFSEVQLEW 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,686,869
Number of Sequences: 539616
Number of extensions: 938909
Number of successful extensions: 1823
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1811
Number of HSP's gapped (non-prelim): 12
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)