Query 042606
Match_columns 72
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 07:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10249 NDUFB10: NADH-ubiquin 99.8 3.6E-21 7.8E-26 132.4 6.2 56 2-57 52-114 (128)
2 KOG4009 NADH-ubiquinone oxidor 99.8 5.1E-20 1.1E-24 130.4 5.0 70 2-71 68-155 (156)
3 PF05051 COX17: Cytochrome C o 73.4 4.9 0.00011 24.1 2.8 30 19-51 18-47 (49)
4 PF13080 DUF3926: Protein of u 65.4 5.4 0.00012 23.6 1.8 21 9-29 15-35 (44)
5 PF15290 Syntaphilin: Golgi-lo 62.2 9.8 0.00021 30.1 3.2 35 2-47 100-134 (305)
6 KOG3758 Uncharacterized conser 60.3 11 0.00023 32.6 3.3 29 37-65 255-283 (655)
7 PF06747 CHCH: CHCH domain; I 55.3 12 0.00027 19.2 1.9 26 18-44 6-31 (35)
8 KOG3496 Cytochrome c oxidase a 50.6 17 0.00036 23.4 2.3 27 22-51 44-70 (72)
9 KOG3477 Putative cytochrome c 48.1 34 0.00073 23.1 3.6 40 22-62 39-89 (97)
10 KOG3458 NADH:ubiquinone oxidor 45.2 35 0.00075 25.0 3.5 29 19-47 84-112 (170)
11 PF03489 SapB_2: Saposin-like 35.6 49 0.0011 16.9 2.3 15 33-47 2-16 (35)
12 PF07956 DUF1690: Protein of U 35.4 57 0.0012 22.5 3.3 35 11-46 107-141 (142)
13 TIGR01557 myb_SHAQKYF myb-like 32.5 41 0.0009 19.9 1.9 22 37-58 9-30 (57)
14 PF01817 CM_2: Chorismate muta 25.1 1.2E+02 0.0026 17.9 3.1 19 7-25 6-24 (81)
15 COG0706 YidC Preprotein transl 24.3 1.3E+02 0.0028 22.8 3.8 30 12-41 157-186 (314)
16 PRK07857 hypothetical protein; 23.4 1.1E+02 0.0025 20.4 3.0 19 7-25 39-57 (106)
17 KOG2856 Adaptor protein PACSIN 23.3 1.3E+02 0.0029 25.1 3.9 40 7-54 173-212 (472)
18 PF03645 Tctex-1: Tctex-1 fami 22.8 1.1E+02 0.0023 18.8 2.6 42 8-50 3-44 (101)
19 TIGR01803 CM-like chorismate m 22.6 1.3E+02 0.0029 18.2 3.0 20 7-26 10-29 (82)
20 TIGR01797 CM_P_1 chorismate mu 21.8 1.4E+02 0.003 18.2 3.0 20 7-26 10-29 (83)
21 PRK02944 OxaA-like protein pre 21.3 2E+02 0.0043 21.3 4.2 28 13-40 110-137 (255)
22 KOG1340 Prosaposin [Lipid tran 21.1 92 0.002 23.2 2.4 37 9-47 148-184 (218)
23 PF11140 DUF2913: Protein of u 20.9 1E+02 0.0023 22.0 2.6 36 18-54 79-114 (207)
24 TIGR01807 CM_P2 chorismate mut 20.3 1.6E+02 0.0035 17.5 3.0 20 7-26 10-29 (76)
No 1
>PF10249 NDUFB10: NADH-ubiquinone oxidoreductase subunit 10; InterPro: IPR019377 NADH-ubiquinone oxidoreductase subunit 10 of (NDUFB10) is a member of a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus.
Probab=99.84 E-value=3.6e-21 Score=132.41 Aligned_cols=56 Identities=48% Similarity=0.797 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhh-------ccCCCCCCCC
Q 042606 2 IVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTR-------GIGWGKDGRH 57 (72)
Q Consensus 2 ~iRE~wV~~e~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~k-------dlG~~~~ar~ 57 (72)
+.||+||++||++|||++|++|+++||+||++||++++++|+++++ |||+++|||.
T Consensus 52 ~~RDk~VD~EIlkILReRl~~C~~~EG~nh~qnC~~l~~qy~ea~~~y~~kYgdlg~~~~~~~ 114 (128)
T PF10249_consen 52 FRRDKLVDQEILKILRERLEACYRREGVNHYQNCRKLVEQYEEAAKNYFIKYGDLGAYGSARK 114 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHhhhhHHHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 5799999999999999999999999999999999999999999999 9999999974
No 2
>KOG4009 consensus NADH-ubiquinone oxidoreductase, subunit NDUFB10/PDSW [Energy production and conversion]
Probab=99.80 E-value=5.1e-20 Score=130.37 Aligned_cols=70 Identities=53% Similarity=0.888 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhh-------ccCCCCCCCCCC---------C--CCC
Q 042606 2 IVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTR-------GIGWGKDGRHPS---------L--HGP 63 (72)
Q Consensus 2 ~iRE~wV~~e~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~k-------dlG~~~~ar~~~---------~--~~~ 63 (72)
+.||+|||.||++|+|+++++|+++||+||++||+++++||.++++ |||.|.|||.-+ . |||
T Consensus 68 ~rrDkmVd~ei~nilrqRvk~C~lye~pnh~q~C~k~veq~e~~~~n~f~kygdLGgys~ar~aymKQkhRmiweRrh~~ 147 (156)
T KOG4009|consen 68 IRRDKMVDIEIANILRQRVKWCYLYEGPNHYQKCRKLVEQYEDATRNYFVKYGDLGGYSSARKAYMKQKHRMIWERRHGP 147 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHhhhhHHHHhhcCC
Confidence 5799999999999999999999999999999999999999999999 999999997654 3 898
Q ss_pred cccccccc
Q 042606 64 KVEAVESE 71 (72)
Q Consensus 64 ~~~~~~~~ 71 (72)
+..+.+++
T Consensus 148 ~~~~~~~~ 155 (156)
T KOG4009|consen 148 KPAAVEAE 155 (156)
T ss_pred cchhhhhc
Confidence 88776654
No 3
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=73.36 E-value=4.9 Score=24.06 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHhhccCC
Q 042606 19 KLKWCYRIEGVNHMQKCRHLVNQYLESTRGIGW 51 (72)
Q Consensus 19 ~L~kCy~rEGvNh~qnC~~l~e~Yl~~~kdlG~ 51 (72)
.=..|--..|+.. |+.++++|.+=+++.|+
T Consensus 18 aRDeC~l~~g~e~---C~~~Ieahk~Cmr~~GF 47 (49)
T PF05051_consen 18 ARDECILFNGEED---CKELIEAHKACMRGEGF 47 (49)
T ss_dssp HHHHHHHHC-CCC---CHHHHHHHHHHHHHHTC
T ss_pred HhHhhHHhcChHH---HHHHHHHHHHHHHHcCC
Confidence 3356888888887 99999999999999886
No 4
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=65.36 E-value=5.4 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 042606 9 DIEKAKIIREKLKWCYRIEGV 29 (72)
Q Consensus 9 ~~e~~kIvrE~L~kCy~rEGv 29 (72)
..-++.|++|+|.+|-+..+.
T Consensus 15 AkqmlnILQEELssy~~E~~~ 35 (44)
T PF13080_consen 15 AKQMLNILQEELSSYPQEQPQ 35 (44)
T ss_pred HHHHHHHHHHHHHhchhhccC
Confidence 345789999999999876653
No 5
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.20 E-value=9.8 Score=30.08 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhh
Q 042606 2 IVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTR 47 (72)
Q Consensus 2 ~iRE~wV~~e~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~k 47 (72)
-|||.||.-| |.|.|-.=.+..-|++++|..+++.
T Consensus 100 RMrEDWIEEE-----------CHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 100 RMREDWIEEE-----------CHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888533 5555555555555555555554443
No 6
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.33 E-value=11 Score=32.58 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCcc
Q 042606 37 HLVNQYLESTRGIGWGKDGRHPSLHGPKV 65 (72)
Q Consensus 37 ~l~e~Yl~~~kdlG~~~~ar~~~~~~~~~ 65 (72)
.+..+|.+++..-|.|++.||..+|-|.|
T Consensus 255 ~L~~~Fisaltrg~~~~~PrpIel~ahDP 283 (655)
T KOG3758|consen 255 SLLRQFISALTRGGPGGMPRPIELHAHDP 283 (655)
T ss_pred HHHHHHHHHHccCCCCCCCCCccccCCCh
Confidence 47789999999999999999999887765
No 7
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=55.25 E-value=12 Score=19.15 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHhHHHHHHHHH
Q 042606 18 EKLKWCYRIEGVNHMQKCRHLVNQYLE 44 (72)
Q Consensus 18 E~L~kCy~rEGvNh~qnC~~l~e~Yl~ 44 (72)
..+-+|.+..+-+ ...|+++++.|++
T Consensus 6 ~~~~~Cl~~n~~~-~~~C~~~~~~~~~ 31 (35)
T PF06747_consen 6 KAYLACLKENNFD-WSKCRKEFKAYKE 31 (35)
T ss_dssp HHHHHHHHCH-SS-TCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCc-HHhhHHHHHHHHH
Confidence 3567899998887 8899999999986
No 8
>KOG3496 consensus Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 [Posttranslational modification, protein turnover, chaperones]
Probab=50.60 E-value=17 Score=23.43 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.5
Q ss_pred HHHHHhcCCHHHHhHHHHHHHHHHhhccCC
Q 042606 22 WCYRIEGVNHMQKCRHLVNQYLESTRGIGW 51 (72)
Q Consensus 22 kCy~rEGvNh~qnC~~l~e~Yl~~~kdlG~ 51 (72)
+|--. |.-++|.+|++.|.+-+++.|+
T Consensus 44 aCIle---~gee~C~~lIEahk~CMr~~GF 70 (72)
T KOG3496|consen 44 ACILE---NGEEKCGKLIEAHKECMRAYGF 70 (72)
T ss_pred hHhhh---cCHHHHHHHHHHHHHHHHHcCC
Confidence 45544 6679999999999999998886
No 9
>KOG3477 consensus Putative cytochrome c oxidase, subunit COX19 [Energy production and conversion]
Probab=48.15 E-value=34 Score=23.08 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHHHhcCCHHHHhHHHHHHHHHHhh-----------ccCCCCCCCCCCCCC
Q 042606 22 WCYRIEGVNHMQKCRHLVNQYLESTR-----------GIGWGKDGRHPSLHG 62 (72)
Q Consensus 22 kCy~rEGvNh~qnC~~l~e~Yl~~~k-----------dlG~~~~ar~~~~~~ 62 (72)
.|-+.--. ..++||.++.+|++--. .||+++.---|+-++
T Consensus 39 ~Cl~~k~e-~~~eCR~laK~YlqCRMdh~Lmdkdd~~~LG~~~~k~ls~~nd 89 (97)
T KOG3477|consen 39 GCLKSKAE-NSEECRLLAKKYLQCRMDHGLMDKDDMAELGFSGVKELSSTND 89 (97)
T ss_pred HHHHHHHH-hHHHHHHHHHHHHHHhhhcccccHHHHHHcCCCccccCcCCCC
Confidence 45555443 35789999999997433 788888666666555
No 10
>KOG3458 consensus NADH:ubiquinone oxidoreductase, NDUFA8/PGIV/19 kDa subunit [Energy production and conversion]
Probab=45.24 E-value=35 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHhh
Q 042606 19 KLKWCYRIEGVNHMQKCRHLVNQYLESTR 47 (72)
Q Consensus 19 ~L~kCy~rEGvNh~qnC~~l~e~Yl~~~k 47 (72)
++..|-.+.|.|.+..|++.-+.|-+...
T Consensus 84 ~y~~C~dysst~~f~~Crk~Q~~fdkcv~ 112 (170)
T KOG3458|consen 84 KYATCMDYSSTNEFSHCRKEQEAFDKCVP 112 (170)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 45568888899999999999999999888
No 11
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=35.59 E-value=49 Score=16.88 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.2
Q ss_pred HHhHHHHHHHHHHhh
Q 042606 33 QKCRHLVNQYLESTR 47 (72)
Q Consensus 33 qnC~~l~e~Yl~~~k 47 (72)
+.|..++++|...+-
T Consensus 2 ~~C~~~V~~y~~~ii 16 (35)
T PF03489_consen 2 DECKNFVDQYGPQII 16 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 579999999977554
No 12
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=35.43 E-value=57 Score=22.52 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHh
Q 042606 11 EKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLEST 46 (72)
Q Consensus 11 e~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~ 46 (72)
+.+.-.|+.|-.|++.+.- --=||-.+++.|.+..
T Consensus 107 ~~v~~aR~~vv~CL~~N~~-rPLnCw~EVe~FKk~V 141 (142)
T PF07956_consen 107 EEVEKARSAVVRCLRENDG-RPLNCWEEVEAFKKEV 141 (142)
T ss_pred hhhHHHHHHHHHHHHHCCC-CCCchHHHHHHHHHHh
Confidence 3467789999999987765 4459999999998764
No 13
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=32.48 E-value=41 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhccCCCCCCCCC
Q 042606 37 HLVNQYLESTRGIGWGKDGRHP 58 (72)
Q Consensus 37 ~l~e~Yl~~~kdlG~~~~ar~~ 58 (72)
.+-++|++.++.+|.|..|.|-
T Consensus 9 eeh~~Fl~ai~~~G~g~~a~pk 30 (57)
T TIGR01557 9 DLHDRFLQAVQKLGGPDWATPK 30 (57)
T ss_pred HHHHHHHHHHHHhCCCcccchH
Confidence 5678999999999998888874
No 14
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=25.14 E-value=1.2e+02 Score=17.87 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042606 7 WIDIEKAKIIREKLKWCYR 25 (72)
Q Consensus 7 wV~~e~~kIvrE~L~kCy~ 25 (72)
-||.+++.++-+|+.-|.+
T Consensus 6 ~iD~~i~~Ll~~R~~l~~~ 24 (81)
T PF01817_consen 6 EIDREIVDLLAERMDLVRK 24 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999887754
No 15
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=24.31 E-value=1.3e+02 Score=22.83 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHhHHHHHH
Q 042606 12 KAKIIREKLKWCYRIEGVNHMQKCRHLVNQ 41 (72)
Q Consensus 12 ~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~ 41 (72)
.-+..++++.+=|+.+|||...-|-.+.-|
T Consensus 157 ~~~~~q~e~~~Lyk~~~vnPl~gclP~liQ 186 (314)
T COG0706 157 DKQKQQQEMMKLYKKHKVNPLAGCLPLLIQ 186 (314)
T ss_pred CHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 344567799999999999999999988765
No 16
>PRK07857 hypothetical protein; Provisional
Probab=23.37 E-value=1.1e+02 Score=20.42 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042606 7 WIDIEKAKIIREKLKWCYR 25 (72)
Q Consensus 7 wV~~e~~kIvrE~L~kCy~ 25 (72)
-||.++++++.+|+.-+.+
T Consensus 39 ~ID~eIl~LL~eR~~la~e 57 (106)
T PRK07857 39 RLDAEILALVKRRTEVSQA 57 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999987765
No 17
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=23.35 E-value=1.3e+02 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhhccCCCCC
Q 042606 7 WIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRGIGWGKD 54 (72)
Q Consensus 7 wV~~e~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~kdlG~~~~ 54 (72)
=|..+-+|-+|+++.+|.+. -|+|+ ++|-+.|.+|+-|.+
T Consensus 173 Svspeq~kKlqdrveK~k~e-----vqktk---ekYektl~el~~yt~ 212 (472)
T KOG2856|consen 173 SVSPEQLKKLQDRVEKCKQE-----VQKTK---EKYEKTLAELNKYTP 212 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHH-----HHHHH---HHHHHHHHHHhccCc
Confidence 35678899999999999764 35554 678888888776653
No 18
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=22.76 E-value=1.1e+02 Score=18.79 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhhccC
Q 042606 8 IDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRGIG 50 (72)
Q Consensus 8 V~~e~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~kdlG 50 (72)
|+..+..++++.|.. ..++..+..+-|..+++.=++.++++|
T Consensus 3 v~~ii~~~l~~~l~~-~~Y~~~~~~~~~~~I~~~i~~~lk~~~ 44 (101)
T PF03645_consen 3 VKEIIEEVLEEKLED-QKYDPEKAQQWSKEISDEILERLKKLG 44 (101)
T ss_dssp HHHHHHHHHHHHHCT-S---HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666777777654 245556667778888888888888887
No 19
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=22.60 E-value=1.3e+02 Score=18.21 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042606 7 WIDIEKAKIIREKLKWCYRI 26 (72)
Q Consensus 7 wV~~e~~kIvrE~L~kCy~r 26 (72)
-||.+++.++.+|+.-+.+.
T Consensus 10 ~ID~~lv~Ll~~R~~~~~~i 29 (82)
T TIGR01803 10 RIDLALVQALGRRMDYVKRA 29 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999877654
No 20
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=21.81 E-value=1.4e+02 Score=18.19 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042606 7 WIDIEKAKIIREKLKWCYRI 26 (72)
Q Consensus 7 wV~~e~~kIvrE~L~kCy~r 26 (72)
-||.++++++.+|+.-+...
T Consensus 10 ~ID~~lv~Ll~~R~~~~~~i 29 (83)
T TIGR01797 10 AIDEKLLKLLAERRELAFEV 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999877654
No 21
>PRK02944 OxaA-like protein precursor; Validated
Probab=21.30 E-value=2e+02 Score=21.32 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHhHHHHH
Q 042606 13 AKIIREKLKWCYRIEGVNHMQKCRHLVN 40 (72)
Q Consensus 13 ~kIvrE~L~kCy~rEGvNh~qnC~~l~e 40 (72)
..=.++++.+-|+++|+|-.-.|-...-
T Consensus 110 ~~k~~~e~~~Lyk~~gvnP~~g~lp~li 137 (255)
T PRK02944 110 QQKLQQEMMQLFQKNGVNPLAGCLPIFI 137 (255)
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 3446788999999999999999988543
No 22
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=21.13 E-value=92 Score=23.19 Aligned_cols=37 Identities=32% Similarity=0.379 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhh
Q 042606 9 DIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTR 47 (72)
Q Consensus 9 ~~e~~kIvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~k 47 (72)
.....+++.+.+..| ..=.|..+.|..++..|+-.+-
T Consensus 148 ~~~k~~~~~~~~~~c--k~l~~~~~~Ck~fV~~y~p~~i 184 (218)
T KOG1340|consen 148 PKTKGKIVSLLLKSC--KSLPNYEQKCKQFVHEYGPQLI 184 (218)
T ss_pred hhHHHHHHHHHHhhc--cCCccchhHHHHHHHHhccHHH
Confidence 345567888888888 6666777779999999986654
No 23
>PF11140 DUF2913: Protein of unknown function (DUF2913); InterPro: IPR021316 This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.
Probab=20.89 E-value=1e+02 Score=22.01 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHhHHHHHHHHHHhhccCCCCC
Q 042606 18 EKLKWCYRIEGVNHMQKCRHLVNQYLESTRGIGWGKD 54 (72)
Q Consensus 18 E~L~kCy~rEGvNh~qnC~~l~e~Yl~~~kdlG~~~~ 54 (72)
++|..+|. .|....++-..-...+++.+++.||--.
T Consensus 79 ~~i~~~~~-~~~~~~~~~~~~l~~~l~~L~~~~w~~~ 114 (207)
T PF11140_consen 79 EYIWRLYS-SGELSKQSDLFRLTAFLELLEEMGWEVG 114 (207)
T ss_pred HHHHHHHh-cccccccCCHHHHHHHHHHHHHcCCeec
Confidence 56667776 7888888889999999999999998644
No 24
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=20.32 E-value=1.6e+02 Score=17.52 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042606 7 WIDIEKAKIIREKLKWCYRI 26 (72)
Q Consensus 7 wV~~e~~kIvrE~L~kCy~r 26 (72)
-||.+++.++.+|+.-+.+.
T Consensus 10 ~iD~~iv~Ll~~R~~~~~~i 29 (76)
T TIGR01807 10 AIDDRILDLLSERATYAQAV 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999877654
Done!