Query 042606
Match_columns 72
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 13:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u96_A Cytochrome C oxidase co 65.7 9.6 0.00033 23.4 4.0 31 21-52 34-64 (69)
2 2rbd_A BH2358 protein; putativ 56.5 9.3 0.00032 24.8 3.0 32 32-65 138-169 (171)
3 2l0y_B HCG2020266, COX17 cytoc 33.2 3.1 0.00011 25.5 -2.1 27 22-51 39-65 (67)
4 1jrj_A Exendin-4; Trp-CAGE, GL 27.5 45 0.0015 18.2 2.2 22 38-59 18-39 (39)
5 3rfi_A Asp; PSI, saposin, hydr 26.6 40 0.0014 20.7 2.2 27 32-58 8-48 (108)
6 2ygu_A Venom allergen 2; hydro 25.9 42 0.0014 22.5 2.3 18 9-26 1-18 (125)
7 3c5t_B Exendin-4, exenatide; l 25.4 32 0.0011 18.0 1.4 22 38-59 10-31 (31)
8 4ddj_A Saposin-A, protein A; s 24.0 84 0.0029 17.6 3.1 34 15-48 29-62 (83)
9 2e9x_A DNA replication complex 23.4 96 0.0033 19.9 3.7 31 29-59 111-144 (149)
10 1pq1_B BCL2-like protein 11; B 22.7 53 0.0018 17.5 1.9 21 5-26 5-25 (33)
11 1l9l_A Granulysin; saposin fol 21.6 46 0.0016 19.4 1.7 32 15-47 26-57 (74)
12 3kj0_B BCL-2-like protein 11; 20.8 64 0.0022 16.5 1.9 16 5-21 7-22 (27)
13 2wh6_B BCL-2-like protein 11; 20.2 68 0.0023 16.3 1.9 11 5-15 5-15 (26)
No 1
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=65.68 E-value=9.6 Score=23.35 Aligned_cols=31 Identities=26% Similarity=0.696 Sum_probs=27.2
Q ss_pred HHHHHHhcCCHHHHhHHHHHHHHHHhhccCCC
Q 042606 21 KWCYRIEGVNHMQKCRHLVNQYLESTRGIGWG 52 (72)
Q Consensus 21 ~kCy~rEGvNh~qnC~~l~e~Yl~~~kdlG~~ 52 (72)
..|--..|.+.- +|+.|+++|.+=+++.|+-
T Consensus 34 DeCil~~gee~~-~C~~lIeahk~CMr~~GF~ 64 (69)
T 1u96_A 34 DTCILFNGQDSE-KCKEFIEKYKECMKGYGFE 64 (69)
T ss_dssp HHHHHHSCSCSG-GGHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCcHH-HHHHHHHHHHHHHHHcCCC
Confidence 468888898875 9999999999999999975
No 2
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=56.48 E-value=9.3 Score=24.82 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHhhccCCCCCCCCCCCCCCcc
Q 042606 32 MQKCRHLVNQYLESTRGIGWGKDGRHPSLHGPKV 65 (72)
Q Consensus 32 ~qnC~~l~e~Yl~~~kdlG~~~~ar~~~~~~~~~ 65 (72)
..+|-.+.++..+.++..||+ .+||....+..
T Consensus 138 ~~~~~~~~~~i~~~m~~KGw~--~~pP~~~~~~~ 169 (171)
T 2rbd_A 138 HMAKVQFGGKMLKLNKNKGWL--IPPPLHSDRPI 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--CCCCBCCC---
T ss_pred HHHHHHHHHHHHHHHHHCCCC--CCCCCccCCCC
Confidence 455667777778888899999 78887766543
No 3
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=33.25 E-value=3.1 Score=25.49 Aligned_cols=27 Identities=33% Similarity=0.653 Sum_probs=16.9
Q ss_pred HHHHHhcCCHHHHhHHHHHHHHHHhhccCC
Q 042606 22 WCYRIEGVNHMQKCRHLVNQYLESTRGIGW 51 (72)
Q Consensus 22 kCy~rEGvNh~qnC~~l~e~Yl~~~kdlG~ 51 (72)
.|--..|.+ +|++++++|.+-+++.|+
T Consensus 39 eCil~~gee---~C~~lIeahk~Cmr~~GF 65 (67)
T 2l0y_B 39 ACIIEKGEE---HCGHLIEAHKESMRALGF 65 (67)
T ss_dssp --------C---CSCSSHHHHHHHHHHHHH
T ss_pred HHHHhcCHH---HHHHHHHHHHHHHHHcCC
Confidence 566667766 999999999999988774
No 4
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=27.48 E-value=45 Score=18.21 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=15.5
Q ss_pred HHHHHHHHhhccCCCCCCCCCC
Q 042606 38 LVNQYLESTRGIGWGKDGRHPS 59 (72)
Q Consensus 38 l~e~Yl~~~kdlG~~~~ar~~~ 59 (72)
-+++|++-|..-+--.++.||+
T Consensus 18 aak~fv~wL~~~k~r~~~pp~~ 39 (39)
T 1jrj_A 18 AVRLFIEWLKNGGPSSGAPPPS 39 (39)
T ss_dssp HHHHHHHHHHTTGGGSSSCCCC
T ss_pred HHHHHHHHHHcCCCCCCCCCCC
Confidence 3677888887655666777775
No 5
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=26.64 E-value=40 Score=20.66 Aligned_cols=27 Identities=22% Similarity=0.248 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHhh--------------ccCCCCCCCCC
Q 042606 32 MQKCRHLVNQYLESTR--------------GIGWGKDGRHP 58 (72)
Q Consensus 32 ~qnC~~l~e~Yl~~~k--------------dlG~~~~ar~~ 58 (72)
-+.|+.++++|..++- .+|.-.+...+
T Consensus 8 ~~~C~~~V~~Y~~~ii~~l~~~~~P~~iC~~lglC~~~~~~ 48 (108)
T 3rfi_A 8 SMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQ 48 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCcCCCccc
Confidence 4789999999987665 67777665543
No 6
>2ygu_A Venom allergen 2; hydrophobic cavity, insect odorant binding protein; 2.60A {Solenopsis invicta}
Probab=25.94 E-value=42 Score=22.53 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042606 9 DIEKAKIIREKLKWCYRI 26 (72)
Q Consensus 9 ~~e~~kIvrE~L~kCy~r 26 (72)
|.++++|+|..+.+|-+.
T Consensus 1 D~~~lki~~k~i~~C~RT 18 (125)
T 2ygu_A 1 DNKELKIIRKDVAECLRT 18 (125)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 468899999999999986
No 7
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=25.43 E-value=32 Score=18.01 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=11.5
Q ss_pred HHHHHHHHhhccCCCCCCCCCC
Q 042606 38 LVNQYLESTRGIGWGKDGRHPS 59 (72)
Q Consensus 38 l~e~Yl~~~kdlG~~~~ar~~~ 59 (72)
-++.|.+-|+.-+--.+++||+
T Consensus 10 aakdFv~WL~ngk~~~~~p~~~ 31 (31)
T 3c5t_B 10 AVRLFIEWLKNGGPSSGAPPPS 31 (31)
T ss_dssp HHHHHHHHHHTTGGGC------
T ss_pred HHHHHHHHHHhCCCCCCCCCCC
Confidence 3567888887766677777775
No 8
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=24.04 E-value=84 Score=17.65 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhhc
Q 042606 15 IIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRG 48 (72)
Q Consensus 15 IvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~kd 48 (72)
|+..--+-|..-...+..+.|..++++|...+-+
T Consensus 29 I~~~l~~~C~~lp~~~~~~~C~~~v~~y~~~ii~ 62 (83)
T 4ddj_A 29 ILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILD 62 (83)
T ss_dssp HHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence 3333345688764444689999999999987753
No 9
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=23.39 E-value=96 Score=19.95 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=23.4
Q ss_pred CCHHHHhHHHHHHHHHHhhc---cCCCCCCCCCC
Q 042606 29 VNHMQKCRHLVNQYLESTRG---IGWGKDGRHPS 59 (72)
Q Consensus 29 vNh~qnC~~l~e~Yl~~~kd---lG~~~~ar~~~ 59 (72)
..++++..++...|+..+-| +.+..+-.||.
T Consensus 111 ~~f~~~Y~~lL~~y~~~~~~~~~ldlt~~l~PPk 144 (149)
T 2e9x_A 111 MEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPK 144 (149)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCCCTTSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCCCCCCCCCC
Confidence 35667788888888887763 78888888883
No 10
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=22.70 E-value=53 Score=17.49 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042606 5 EKWIDIEKAKIIREKLKWCYRI 26 (72)
Q Consensus 5 E~wV~~e~~kIvrE~L~kCy~r 26 (72)
|-||.||.-|| .++..+-|-+
T Consensus 5 EiwIAQELRRI-GDeFNa~ypR 25 (33)
T 1pq1_B 5 EIRIAQELRRI-GDEFNETYTR 25 (33)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-hHHhhcccch
Confidence 77999987665 5555554433
No 11
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=21.58 E-value=46 Score=19.40 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHhh
Q 042606 15 IIREKLKWCYRIEGVNHMQKCRHLVNQYLESTR 47 (72)
Q Consensus 15 IvrE~L~kCy~rEGvNh~qnC~~l~e~Yl~~~k 47 (72)
|.+.--+.|-.- |.+.-..|..++++|...+-
T Consensus 26 I~~~L~~vC~~l-~~~~~~~C~~~V~~y~~~Ii 57 (74)
T 1l9l_A 26 VSNAATRVCRTG-RSRWRDVCRNFMRRYQSRVI 57 (74)
T ss_dssp HHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHH
Confidence 334444556553 55588999999999998876
No 12
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=20.82 E-value=64 Score=16.46 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042606 5 EKWIDIEKAKIIREKLK 21 (72)
Q Consensus 5 E~wV~~e~~kIvrE~L~ 21 (72)
|-||.||.-|| .++..
T Consensus 7 E~wiAqELRRI-GDeFN 22 (27)
T 3kj0_B 7 EIWYAQELRRI-GDEFN 22 (27)
T ss_dssp HHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHHH-HHHHH
Confidence 67888886665 44443
No 13
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=20.19 E-value=68 Score=16.25 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q 042606 5 EKWIDIEKAKI 15 (72)
Q Consensus 5 E~wV~~e~~kI 15 (72)
|-||.+|.-||
T Consensus 5 E~~iAqELRRI 15 (26)
T 2wh6_B 5 EIWIAQELRRI 15 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888887665
Done!