Query 042607
Match_columns 249
No_of_seqs 218 out of 752
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03396 PC_PLC phospholipase 100.0 3.1E-43 6.8E-48 352.8 13.3 164 17-188 276-463 (690)
2 PF04185 Phosphoesterase: Phos 100.0 1.8E-39 3.8E-44 304.0 9.2 126 11-148 240-371 (376)
3 TIGR03397 acid_phos_Burk acid 100.0 1.8E-32 3.9E-37 266.3 12.6 134 17-173 334-482 (483)
4 COG3511 PlcC Phospholipase C [ 100.0 7.6E-30 1.7E-34 247.6 10.4 159 13-178 275-450 (527)
5 COG3511 PlcC Phospholipase C [ 97.5 9.9E-05 2.1E-09 73.4 4.8 102 13-138 368-475 (527)
6 TIGR03417 chol_sulfatase choli 94.6 0.092 2E-06 51.5 6.8 68 54-137 259-327 (500)
7 PF00884 Sulfatase: Sulfatase; 94.5 0.12 2.6E-06 44.8 6.7 68 54-135 217-286 (308)
8 PRK13759 arylsulfatase; Provis 93.5 0.22 4.9E-06 48.6 7.1 62 54-131 274-335 (485)
9 PRK11598 putative metal depend 88.9 1.3 2.8E-05 44.9 7.2 67 53-133 423-492 (545)
10 COG3119 AslA Arylsulfatase A a 88.2 1.2 2.7E-05 43.5 6.4 65 54-132 266-331 (475)
11 KOG3867 Sulfatase [General fun 86.2 2.7 5.8E-05 42.7 7.6 78 53-138 274-353 (528)
12 PRK12363 phosphoglycerol trans 85.7 2.5 5.4E-05 44.3 7.3 63 54-137 361-424 (703)
13 COG1902 NemA NADH:flavin oxido 72.3 4 8.7E-05 39.4 3.6 36 184-223 135-170 (363)
14 PRK10605 N-ethylmaleimide redu 71.9 4.1 8.8E-05 38.9 3.5 36 184-223 145-180 (362)
15 PRK09598 lipid A phosphoethano 69.9 13 0.00029 37.4 6.8 30 53-84 409-438 (522)
16 PRK03776 phosphoglycerol trans 67.3 37 0.00079 36.3 9.5 31 54-84 364-394 (762)
17 cd02929 TMADH_HD_FMN Trimethyl 64.3 7.4 0.00016 37.2 3.6 36 184-223 136-171 (370)
18 cd02803 OYE_like_FMN_family Ol 63.4 12 0.00026 34.3 4.6 37 183-223 126-162 (327)
19 cd02931 ER_like_FMN Enoate red 61.4 9 0.00019 36.8 3.6 36 184-223 136-171 (382)
20 PLN02411 12-oxophytodienoate r 59.9 9.7 0.00021 36.8 3.5 35 184-222 151-185 (391)
21 PF01676 Metalloenzyme: Metall 59.8 17 0.00036 32.7 4.8 58 54-137 167-224 (252)
22 COG3083 Predicted hydrolase of 58.5 31 0.00067 35.6 6.8 72 54-138 429-500 (600)
23 cd02930 DCR_FMN 2,4-dienoyl-Co 58.0 12 0.00025 35.4 3.6 34 184-221 123-156 (353)
24 KOG0532 Leucine-rich repeat (L 57.7 14 0.0003 38.7 4.3 36 184-222 624-659 (722)
25 PRK11560 phosphoethanolamine t 57.1 32 0.00069 35.2 6.8 59 53-129 437-496 (558)
26 cd04735 OYE_like_4_FMN Old yel 56.6 12 0.00026 35.3 3.5 36 184-223 130-165 (353)
27 TIGR01696 deoB phosphopentomut 56.0 24 0.00053 34.6 5.5 55 54-135 297-351 (381)
28 PRK10649 hypothetical protein; 56.0 39 0.00085 34.5 7.2 64 53-130 432-497 (577)
29 PRK05434 phosphoglyceromutase; 55.2 44 0.00096 33.9 7.4 59 54-131 414-472 (507)
30 cd04734 OYE_like_3_FMN Old yel 54.7 14 0.0003 34.9 3.6 36 184-223 127-162 (343)
31 cd04733 OYE_like_2_FMN Old yel 54.6 14 0.00031 34.5 3.6 36 184-223 135-170 (338)
32 cd02933 OYE_like_FMN Old yello 54.2 15 0.00031 34.8 3.6 36 184-223 138-173 (338)
33 cd04747 OYE_like_5_FMN Old yel 53.3 15 0.00032 35.3 3.6 38 184-225 130-167 (361)
34 PRK13523 NADPH dehydrogenase N 51.7 17 0.00036 34.5 3.6 37 184-224 128-164 (337)
35 cd02932 OYE_YqiM_FMN Old yello 51.5 17 0.00037 33.9 3.6 35 184-222 140-174 (336)
36 PF00724 Oxidored_FMN: NADH:fl 51.1 11 0.00024 35.4 2.3 35 185-223 136-170 (341)
37 PRK05362 phosphopentomutase; P 50.5 58 0.0013 32.0 7.2 53 54-133 305-357 (394)
38 TIGR01307 pgm_bpd_ind 2,3-bisp 47.9 49 0.0011 33.6 6.4 86 18-130 373-464 (501)
39 TIGR01323 nitrile_alph nitrile 40.2 19 0.00042 32.1 1.9 52 193-247 42-98 (185)
40 PRK08255 salicylyl-CoA 5-hydro 38.2 32 0.0007 35.9 3.5 36 184-223 537-572 (765)
41 PRK12383 putative mutase; Prov 36.1 89 0.0019 30.9 6.0 54 54-134 313-366 (406)
42 COG2194 Predicted membrane-ass 35.1 87 0.0019 32.2 5.9 58 53-130 424-487 (555)
43 PF14246 TetR_C_7: AefR-like t 34.3 57 0.0012 22.0 3.2 23 185-207 32-54 (55)
44 TIGR03446 mycothiol_Mca mycoth 32.2 39 0.00084 31.5 2.7 33 57-93 106-140 (283)
45 PF10367 Vps39_2: Vacuolar sor 31.2 16 0.00036 27.5 0.1 27 183-209 19-45 (109)
46 cd00016 alkPPc Alkaline phosph 29.2 1.8E+02 0.0038 28.3 6.7 82 53-139 275-371 (384)
47 PF06395 CDC24: CDC24 Calponin 28.8 1.8E+02 0.0039 23.1 5.5 53 164-225 16-68 (89)
48 COG0548 ArgB Acetylglutamate k 27.9 79 0.0017 29.6 3.9 42 184-225 198-244 (265)
49 PF15605 Toxin_52: Putative to 27.5 20 0.00044 29.3 -0.0 11 84-94 40-50 (103)
50 COG3424 BcsA Predicted naringe 27.2 69 0.0015 31.3 3.5 43 183-225 58-105 (356)
51 TIGR03445 mycothiol_MshB 1D-my 21.7 90 0.002 29.0 3.1 32 58-93 109-142 (284)
52 PF00195 Chal_sti_synt_N: Chal 21.1 1.3E+02 0.0029 27.3 4.0 39 188-226 87-127 (226)
53 PRK04024 cofactor-independent 21.0 2.2E+02 0.0048 28.1 5.7 59 54-140 320-378 (412)
54 KOG3731 Sulfatases [Carbohydra 20.8 2E+02 0.0043 29.6 5.4 66 57-137 282-347 (541)
55 COG0646 MetH Methionine syntha 20.3 47 0.001 31.9 0.9 93 116-208 182-286 (311)
No 1
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=100.00 E-value=3.1e-43 Score=352.81 Aligned_cols=164 Identities=24% Similarity=0.493 Sum_probs=141.9
Q ss_pred hHHHHHhcCCCCCeEEEeccccCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCcC-cCceEEEEEEeCCCCccccCCC
Q 042607 17 HFKKDCEEGKLPNYVVVEQRYFDLLSVPANDDHPSHDVSEGQKFVKEVYEALRSSPQ-WNEILFIITYDEHGGFYDHVPT 95 (249)
Q Consensus 17 ~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nd~HP~~dv~~G~~~l~~v~eAL~~sP~-W~~TliIITyDE~GGfyDHV~P 95 (249)
+|++|+++|+||+||||+|+++ +||||++++..|++||++||+||++||+ |++|||||||||||||||||+|
T Consensus 276 ~f~~Dv~~g~LP~VS~I~p~~~-------~seHP~~~~~~G~~~i~~vl~aL~~nP~vW~~TvliItyDE~gGffDHV~P 348 (690)
T TIGR03396 276 QLRADVQAGTLPQVSWIVAPAA-------YSEHPGSSPAYGAWYVSRVLDALTANPEVWSKTVLLLNYDENDGFFDHVPP 348 (690)
T ss_pred HHHHHHHcCCCCeEEEEecCCC-------CCCCCCCChHHHHHHHHHHHHHHHhChhhhhceEEEEEEeCCCCcccCcCC
Confidence 8999999999999999999874 7999999999999999999999999997 9999999999999999999999
Q ss_pred CCCCCCCCCCCC------CCCCCCC----------CCCCCcCceeeEEEccCCCCCeEec----Cccccc-cccCCcccC
Q 042607 96 PVTGVPSPDDIV------GPEPYNF----------KFDRLGVRVPTIFISPWIQRGTFTL----PEPTLK-LRDGEAKED 154 (249)
Q Consensus 96 P~~~~p~pDg~~------g~~p~~f----------~f~~lG~RVP~ivISPw~k~G~V~~----~~~vl~-lr~~~~~~~ 154 (249)
|.++.+.+++.. +...+.+ .+.|+|+|||+||||||+|+|+|.. ++|||| ||++.+..+
T Consensus 349 P~~p~~~~~~~~~g~~t~~~~~e~~~~~~~~~~~~~p~GlG~RVP~iVISPwsrgG~V~s~~~DHtSvLrflE~~fgl~~ 428 (690)
T TIGR03396 349 PVPPSYNADGTSAGKSTLDTAGEYFDVPDPAEARGRPIGLGPRVPMYVISPWSKGGWVNSQVFDHTSVLRFLEKRFGVRE 428 (690)
T ss_pred CCCCCcccccccccccccCCCccccccccccccccCcCCccceeeEEEECCCCCCCcccCccccHHHHHHHHHHHhCCCC
Confidence 998766555432 1111111 2458999999999999999999974 589988 888888999
Q ss_pred CCCCccHHHHH-HHhhhhcCCCCCCCC-ccccCCcc
Q 042607 155 AKLTDFQQELV-QMAATLNGDYKKDIY-PHKLVEEM 188 (249)
Q Consensus 155 ~~ls~~~~~l~-~la~~l~~~~~~~~~-p~~l~~~~ 188 (249)
++||.||++.+ +|+++|++.....+. | .||.+.
T Consensus 429 ~nis~wRra~~gDLtsafdf~~p~~~~~p-~lp~~~ 463 (690)
T TIGR03396 429 PNISPWRRAVCGDLTSAFDFSRPDTTPFP-ALPDTS 463 (690)
T ss_pred cccChhhhcccccHHHhcCCCCCCcccCC-CCCCcc
Confidence 99999999977 999999999987664 5 477655
No 2
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=100.00 E-value=1.8e-39 Score=303.98 Aligned_cols=126 Identities=45% Similarity=0.853 Sum_probs=79.8
Q ss_pred cCcchHhHHHHHhcCCCCCeEEEeccccCCCCCCCCCCCCCCCh-hHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCc
Q 042607 11 FHQFDLHFKKDCEEGKLPNYVVVEQRYFDLLSVPANDDHPSHDV-SEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGF 89 (249)
Q Consensus 11 f~~~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nd~HP~~dv-~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGf 89 (249)
.++++ +|++|+++|+||+||||+|+.| ||+||++++ +.||+||++||+||++||+|++|||||||||+|||
T Consensus 240 ~~~~~-~f~~d~~~g~LP~~sfI~p~~~-------~d~Hp~~~~~~~gd~~l~~vv~ai~~sp~W~~T~iiIt~DE~gG~ 311 (376)
T PF04185_consen 240 IVPLS-QFYADLANGTLPQVSFIEPNMC-------NDMHPPYSVIADGDAFLARVVEAIRNSPYWKNTAIIITYDENGGF 311 (376)
T ss_dssp EEECH-HHHHHHHTT---SEEEEE--GG-------GS--TTT--HHHHHHHHHHHHHHHHCSTTGGGEEEEEEES--TT-
T ss_pred cchHH-HHHHHHHcCCCCceEEEEecCc-------CCCCCCCCchhHHHHHHHHHHHHHhcCcCcCCeEEEEEEecCCCc
Confidence 44566 8999999999999999999764 799999875 99999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCCCCeEec----Cccccc-ccc
Q 042607 90 YDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQRGTFTL----PEPTLK-LRD 148 (249)
Q Consensus 90 yDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k~G~V~~----~~~vl~-lr~ 148 (249)
||||+||..+.+.||+..|+ +.|.|+|+|||+||||||+|+|+|+. ++|||| |+.
T Consensus 312 ~DHV~pp~~~~~~~~~~~g~----~~~~g~G~RVP~ivISP~~k~G~v~~~~ydh~Silrtie~ 371 (376)
T PF04185_consen 312 YDHVPPPRSPVPNPDEWVGP----FGFDGLGPRVPAIVISPYAKGGTVDHTPYDHTSILRTIEE 371 (376)
T ss_dssp ---------TTTT------S----TT------B--EEEESTTB-TTEEE---EETHHHHHHHHH
T ss_pred CCCCCCCCCCcccccccccc----CCCCCccccCCeEEeCCCCCCCcEeCCccchhHHHHHHHH
Confidence 99999999988788877765 78899999999999999999999985 588866 543
No 3
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=99.98 E-value=1.8e-32 Score=266.31 Aligned_cols=134 Identities=28% Similarity=0.542 Sum_probs=117.4
Q ss_pred hHHHHHhcCCCCCeEEEeccccCCCCCCCCCCCCC-CChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCC
Q 042607 17 HFKKDCEEGKLPNYVVVEQRYFDLLSVPANDDHPS-HDVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPT 95 (249)
Q Consensus 17 ~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nd~HP~-~dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~P 95 (249)
+|.+|+++|+||+||||+|+.+ +||||+ ++|+.||.||++||++|+++|.|++|+|||||||+|||||||+|
T Consensus 334 ~F~~Dv~~g~LPqvSfI~P~~~-------~d~Hp~~s~v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG~~Dhv~p 406 (483)
T TIGR03397 334 SFIAAIDAGKLPQVSFYKPQGN-------LNEHAGYADVAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGGFWDHVAP 406 (483)
T ss_pred HHHHHHHcCCCCcEEEEeCCCC-------CCCCcCCCCHHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCCcCcCCCC
Confidence 5999999999999999999864 699998 48999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCCCCeEec----Cccccc-cccCCcccC-CCCCccHHHHH----
Q 042607 96 PVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQRGTFTL----PEPTLK-LRDGEAKED-AKLTDFQQELV---- 165 (249)
Q Consensus 96 P~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k~G~V~~----~~~vl~-lr~~~~~~~-~~ls~~~~~l~---- 165 (249)
|.. . ..++|.|||+||||||+++|+|+. +.+||+ |+...+... +.|+.|++.+|
T Consensus 407 Pk~------~----------~~ggG~RVP~IVisP~~k~G~v~~~~~dh~SiL~Tie~~~GL~~L~~is~~~~a~~~~~~ 470 (483)
T TIGR03397 407 PKG------D----------RWGPGTRIPAIVVSPFAKKGYVDHTPYDTTSILRFITRRFGLPPLPGVKARDRALAARGA 470 (483)
T ss_pred CCc------C----------CCCCccEEEEEEEECCCCCCcEeCceeeeehHHHHHHHHhCCCCcCCCchhhhhhhhccC
Confidence 832 1 125699999999999999999973 578876 666555544 89999999986
Q ss_pred ----HHhhhhcC
Q 042607 166 ----QMAATLNG 173 (249)
Q Consensus 166 ----~la~~l~~ 173 (249)
+|+++|++
T Consensus 471 ~~~GDlT~a~~f 482 (483)
T TIGR03397 471 KPMGDLTNALDL 482 (483)
T ss_pred CCCccccccccC
Confidence 99999986
No 4
>COG3511 PlcC Phospholipase C [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=7.6e-30 Score=247.57 Aligned_cols=159 Identities=25% Similarity=0.423 Sum_probs=131.1
Q ss_pred cchHhHHHHHhcCCCCCeEEEeccccCCCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCcC-cCceEEEEEEeCCCCccc
Q 042607 13 QFDLHFKKDCEEGKLPNYVVVEQRYFDLLSVPANDDHPSHDVSEGQKFVKEVYEALRSSPQ-WNEILFIITYDEHGGFYD 91 (249)
Q Consensus 13 ~~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nd~HP~~dv~~G~~~l~~v~eAL~~sP~-W~~TliIITyDE~GGfyD 91 (249)
.+..+|++|+++|+|||||||.+.++ .++||.-.+..|++.+..++++|.++|+ |++|+|||+|||+|||||
T Consensus 275 ~~~~~~~~Dvk~~tLPqVSWvi~~~~-------~sehp~wp~~~GA~~~~~~l~~l~~np~vW~kT~l~v~~DE~~GfyD 347 (527)
T COG3511 275 GYLDDFADDVKNNTLPQVSWVIAPGL-------ESEHPNWPWYAGAWYIVTVLRILTSNPAVWAKTVLFVTYDENGGFYD 347 (527)
T ss_pred CchHHhhhhhhcCCCCceeeeccccc-------cccCCCCCcccchHHHHHHHHHhhcCcccccceeEEEEecCCCCccc
Confidence 34448999999999999999998764 5999997778999999999999999998 999999999999999999
Q ss_pred cCCCCCCCCCCCCCC-CC--CCCCC-------CCCCCCcCceeeEEEccCCCCCeEec----Cccccc-cccCCcccCCC
Q 042607 92 HVPTPVTGVPSPDDI-VG--PEPYN-------FKFDRLGVRVPTIFISPWIQRGTFTL----PEPTLK-LRDGEAKEDAK 156 (249)
Q Consensus 92 HV~PP~~~~p~pDg~-~g--~~p~~-------f~f~~lG~RVP~ivISPw~k~G~V~~----~~~vl~-lr~~~~~~~~~ 156 (249)
||.||+++.-.+.+. .| -.+.. ...-++|+|||+++||||+|+|+|.. ++|+++ +++..++-+++
T Consensus 348 hv~Ppt~p~~~~g~~l~~~~~~d~~~e~~~~~G~p~gLgfrvP~~visPws~gg~~~sd~fDhts~l~f~~~rfgv~~Pn 427 (527)
T COG3511 348 HVVPPTAPSGTPGEHLPGLSTIDAAFESGIDRGSPYGLGFRVPCGVISPWSRGGYVDSDTFDHTSALRFLELRFGVPVPN 427 (527)
T ss_pred ccCCCCCCCCCccccccCCccccccccccccCCCCcceeccccceeecCCCCCCeeeecccchHHHHHhhhhhccccCCC
Confidence 999999864333221 11 00111 12347999999999999999999974 478777 77778899999
Q ss_pred CCccHHHHH-HHhhhhcCCCCCC
Q 042607 157 LTDFQQELV-QMAATLNGDYKKD 178 (249)
Q Consensus 157 ls~~~~~l~-~la~~l~~~~~~~ 178 (249)
+|.|++.++ +|++.+|+.....
T Consensus 428 ~s~wr~~V~gD~ts~fdfa~Pp~ 450 (527)
T COG3511 428 ISPWRRAVTGDLTSAFDFAAPPK 450 (527)
T ss_pred ccccceeeeecccceeecccCCC
Confidence 999999988 9999999887763
No 5
>COG3511 PlcC Phospholipase C [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=9.9e-05 Score=73.42 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=78.8
Q ss_pred cchHhHHHHHhcCCCCCeEEEeccccCCCCCCCCCCCCC---CChhHHHHHHHHHHHHHhcC---cCcCceEEEEEEeCC
Q 042607 13 QFDLHFKKDCEEGKLPNYVVVEQRYFDLLSVPANDDHPS---HDVSEGQKFVKEVYEALRSS---PQWNEILFIITYDEH 86 (249)
Q Consensus 13 ~~~~~F~~D~~~G~LP~vSfI~P~~~d~~~~~~nd~HP~---~dv~~G~~~l~~v~eAL~~s---P~W~~TliIITyDE~ 86 (249)
..+..|..++.+|.++.+.|-.|-+- -+.|.- -+...+|....-++-.+|.+ |+|..-.+.|+|||+
T Consensus 368 ~~d~~~e~~~~~G~p~gLgfrvP~~v-------isPws~gg~~~sd~fDhts~l~f~~~rfgv~~Pn~s~wr~~V~gD~t 440 (527)
T COG3511 368 TIDAAFESGIDRGSPYGLGFRVPCGV-------ISPWSRGGYVDSDTFDHTSALRFLELRFGVPVPNISPWRRAVTGDLT 440 (527)
T ss_pred cccccccccccCCCCcceecccccee-------ecCCCCCCeeeecccchHHHHHhhhhhccccCCCccccceeeeeccc
Confidence 34556778888888999998877431 255652 25566777777777778888 999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCCCCeEe
Q 042607 87 GGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQRGTFT 138 (249)
Q Consensus 87 GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k~G~V~ 138 (249)
+ .|||+.||.. .| .+.|.|+|+++++|.++.|.|.
T Consensus 441 s-~fdfa~Pp~~---~~-------------~~P~t~~p~~~~~~~~~~~~vp 475 (527)
T COG3511 441 S-AFDFAAPPKA---DP-------------WLPNTRHPALIVLPFAKQGCVP 475 (527)
T ss_pred c-eeecccCCCC---CC-------------CCCCCCcccccccccccccccC
Confidence 9 8899998832 11 1459999999999999999774
No 6
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=94.57 E-value=0.092 Score=51.53 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccC-C
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPW-I 132 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw-~ 132 (249)
+..-|..|.+|+++|.+...+++|+||+|=|=++.+-+| |..+. ..+...|.|||+||..|= +
T Consensus 259 v~~~D~~iG~il~~L~~~g~~dnTivvf~sDHG~~~G~~------------g~~~K----~~~ye~~~~vPlii~~p~~~ 322 (500)
T TIGR03417 259 ISYLDDKIGELLQTLEETRQADDTIVLFTSDHGDMLGER------------GLWYK----MSFFEGSARVPLMVHAPGRF 322 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCcEEEEECCCchhhccC------------Ccccc----cCcccccceEeEEEEeCCCC
Confidence 334677899999999999999999999985543333244 22221 112245999999999996 4
Q ss_pred CCCeE
Q 042607 133 QRGTF 137 (249)
Q Consensus 133 k~G~V 137 (249)
++|.+
T Consensus 323 ~~~~~ 327 (500)
T TIGR03417 323 APGRV 327 (500)
T ss_pred CCccc
Confidence 55655
No 7
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=94.54 E-value=0.12 Score=44.82 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccc--cCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYD--HVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPW 131 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyD--HV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw 131 (249)
+...|.+|.++++.|+++..+++|+||||=|-+..+.. +.-.. ++. ......+.|||+++++|-
T Consensus 217 i~~~D~~l~~~~~~l~~~~~~d~TiiiitsDHG~~~~e~~~~~~~-----------~~~---~~~~~~~~~vP~~i~~p~ 282 (308)
T PF00884_consen 217 IAYVDDQLGRFIEYLKEQGLYDNTIIIITSDHGESFGENGHYFHG-----------GKG---NDLYEESYHVPLIIYWPG 282 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSSSTGGHHTTSSS-----------STT---HSSSHHHHBEEEEEECTT
T ss_pred HHHHHHHhhhhhhhhhhcCCcccceeEEecCcCcccccccccccc-----------ccc---ccchhhccccceEEEcCC
Confidence 45567889999999999999999999999655444432 21100 000 011124789999999999
Q ss_pred CCCC
Q 042607 132 IQRG 135 (249)
Q Consensus 132 ~k~G 135 (249)
..+.
T Consensus 283 ~~~~ 286 (308)
T PF00884_consen 283 GEPQ 286 (308)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 9888
No 8
>PRK13759 arylsulfatase; Provisional
Probab=93.49 E-value=0.22 Score=48.64 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPW 131 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw 131 (249)
+..-|..|++++++|.+...+++|+||+|=|=+..+.+| +..+.. ..+ ..+.|||+||-+|-
T Consensus 274 i~~~D~~iG~l~~~l~~~g~~dnTiiv~tsDHG~~~g~~------------~~~~k~---~~~-e~~~rVPlii~~p~ 335 (485)
T PRK13759 274 ITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGDMLGDH------------YLFRKG---YPY-EGSAHIPFIIYDPG 335 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCeEEEEECCCccccccc------------ccccCC---ccc-cccceeeEEEecCC
Confidence 345678999999999999999999999885433333333 111110 011 24799999999997
No 9
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=88.92 E-value=1.3 Score=44.88 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCC-ccccCCCCCCCCCCCCCCC-CCCCCCCCCCCCcCceeeEE-Ec
Q 042607 53 DVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGG-FYDHVPTPVTGVPSPDDIV-GPEPYNFKFDRLGVRVPTIF-IS 129 (249)
Q Consensus 53 dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GG-fyDHV~PP~~~~p~pDg~~-g~~p~~f~f~~lG~RVP~iv-IS 129 (249)
.+..-|..++++++.|++...|.+|+||.+=| ||- +.+| |.. .+.++.+.. ..+.|||+|+ .|
T Consensus 423 sI~ytD~~lg~ii~~Lk~~~~~~nT~iIy~SD-HGe~lge~------------g~~~hg~~y~~aP-~~~~~VPliiw~s 488 (545)
T PRK11598 423 TILYVDYIVDKAINLLKQHQDKFNTSLVYLSD-HGESLGEN------------GIYLHGLPYAIAP-DQQTHVPMLLWLS 488 (545)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCeEEEEECc-CCCccccC------------CcccCCCccccCc-cccccccEEEEEC
Confidence 35668899999999999999999999888755 332 2232 100 011221211 2389999998 57
Q ss_pred cCCC
Q 042607 130 PWIQ 133 (249)
Q Consensus 130 Pw~k 133 (249)
|-.+
T Consensus 489 ~~~~ 492 (545)
T PRK11598 489 PDYQ 492 (545)
T ss_pred cchh
Confidence 7433
No 10
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=88.22 E-value=1.2 Score=43.55 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCc-cccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGF-YDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWI 132 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGf-yDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~ 132 (249)
+..=|.-|.+++++|...-.|.+|+||+|=| ||.+ ..|=. | ..+.. -.+...|.|||+||=-|..
T Consensus 266 v~~~D~~iGrll~~L~~~g~~DnTivvftsD-hG~~~~~~~~-~---------~~~~k---~~~~egg~~VPliI~~Pg~ 331 (475)
T COG3119 266 VRYLDDQIGRLLDALKELGLLDNTIVVFTSD-HGAWLGAHGT-P---------FRGYK---GTLYEGGTRVPLIIRWPGG 331 (475)
T ss_pred HHHHHHHHhHHHHHHHHhCCccCcEEEEeCC-CCCcccCCCC-c---------ccccc---cccccCcccceEEEeccCc
Confidence 3456788999999999999999999997655 4421 11100 0 01110 0133469999999998884
No 11
>KOG3867 consensus Sulfatase [General function prediction only]
Probab=86.19 E-value=2.7 Score=42.75 Aligned_cols=78 Identities=27% Similarity=0.193 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCC-CCCCCCcCceeeEEEcc-
Q 042607 53 DVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYN-FKFDRLGVRVPTIFISP- 130 (249)
Q Consensus 53 dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~-f~f~~lG~RVP~ivISP- 130 (249)
.|..=|+-|.+++++|...--+++|+|+.|-|-++= ..+...-.+..++.... ..--..|.|+|.++.+|
T Consensus 274 ~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~--------~~~~~~~~~~n~~~~g~~~~~weggir~~~~~~~p~ 345 (528)
T KOG3867|consen 274 MVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGP--------LEGGRGNGGSNGPWNGIKKPGWEGGIRVPGLARWPG 345 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCcc--------ccCccccccccCCccceecCCccccCCCcchhcCcc
Confidence 577779999999999999999999999999987652 11111111122221110 11123699999999999
Q ss_pred CCCCCeEe
Q 042607 131 WIQRGTFT 138 (249)
Q Consensus 131 w~k~G~V~ 138 (249)
.++.|.|.
T Consensus 346 ~~~~g~v~ 353 (528)
T KOG3867|consen 346 VVPAGQVS 353 (528)
T ss_pred ccccceec
Confidence 55677775
No 12
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=85.72 E-value=2.5 Score=44.30 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEE-ccCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFI-SPWI 132 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivI-SPw~ 132 (249)
+..-|..|+++++.|++++.|++|+|||+= +|++..+ +..+ .-+...|||.+++ .|-+
T Consensus 361 I~ysD~aIG~FId~LKksglydNTIIV~~G-DH~~~~~-------------~~~~-------~L~~~kRvP~~I~ip~gi 419 (703)
T PRK12363 361 IKCSDRLIGQLVDRIRNSRYGKNTIIVIAS-DHLAMPN-------------DLSD-------VLTKQKRENLLLFLGKDI 419 (703)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCeEEEEEc-CCCcccc-------------cccc-------cCCCCCeEEEEEEECCcC
Confidence 456789999999999999999999988863 2443311 0101 0122468986665 4677
Q ss_pred CCCeE
Q 042607 133 QRGTF 137 (249)
Q Consensus 133 k~G~V 137 (249)
++|.+
T Consensus 420 k~g~i 424 (703)
T PRK12363 420 APQQV 424 (703)
T ss_pred CCCcE
Confidence 77765
No 13
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=72.29 E-value=4 Score=39.37 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=32.7
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|+.||..| +++-++.|.+|++.|+++|.|.=+|--
T Consensus 135 ~pr~mt~~e----I~~ii~~f~~AA~rA~~AGFDgVEIH~ 170 (363)
T COG1902 135 TPRELTEEE----IEEVIEDFARAARRAKEAGFDGVEIHG 170 (363)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 689999999 889999999999999999999877754
No 14
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=71.88 E-value=4.1 Score=38.94 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=32.0
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|+.||..| +++-++.|.+|++.|+++|.|.=+|-.
T Consensus 145 ~p~~mt~~e----I~~ii~~f~~AA~rA~~AGfDGVEIh~ 180 (362)
T PRK10605 145 TPRALELEE----IPGIVNDFRQAIANAREAGFDLVELHS 180 (362)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 478999999 888899999999999999999877753
No 15
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=69.91 E-value=13 Score=37.38 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEe
Q 042607 53 DVSEGQKFVKEVYEALRSSPQWNEILFIITYD 84 (249)
Q Consensus 53 dv~~G~~~l~~v~eAL~~sP~W~~TliIITyD 84 (249)
.+..-|..++++++.|++.+. +|++|.+=|
T Consensus 409 sI~ytD~~l~~ii~~Lk~~~~--~t~iIy~SD 438 (522)
T PRK09598 409 TIFYNDYLLDKIISMLKNLKQ--PALMIYLSD 438 (522)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CeEEEEEcc
Confidence 356678899999999998766 888777754
No 16
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=67.34 E-value=37 Score=36.27 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEe
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYD 84 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyD 84 (249)
+..-|..+.+++++|++++.|++|+||++=|
T Consensus 364 v~~~D~~iG~fi~~Lk~~g~~dNTiIV~~sD 394 (762)
T PRK03776 364 VSCSQENIAALINKIKASPWFKNTVIVVSSD 394 (762)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCeEEEEEcc
Confidence 5667889999999999999999999998755
No 17
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=64.27 E-value=7.4 Score=37.19 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=31.8
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|+.||..| +++-++.|.+|++.|+++|.|.=+|-.
T Consensus 136 ~p~~mt~~e----I~~ii~~f~~AA~ra~~aGfDgVEih~ 171 (370)
T cd02929 136 QAREMDKDD----IKRVRRWYVDAALRARDAGFDIVYVYA 171 (370)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 588999998 778899999999999999999877754
No 18
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.40 E-value=12 Score=34.31 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=32.4
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 183 KLVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 183 ~l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
..|+.||..| +++-++.|.++++.|+++|.|.=+|-.
T Consensus 126 ~~~~~mt~~e----i~~~i~~~~~aA~~a~~aGfDgveih~ 162 (327)
T cd02803 126 EPPREMTKEE----IEQIIEDFAAAARRAKEAGFDGVEIHG 162 (327)
T ss_pred CCCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 3688999999 778889999999999999999877754
No 19
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=61.45 E-value=9 Score=36.79 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=31.7
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|+.||..| +++-++.|.++++.|+++|.|.=+|-.
T Consensus 136 ~p~~mt~~e----I~~ii~~f~~AA~ra~~AGfDgVEih~ 171 (382)
T cd02931 136 TCRELTTEE----VETFVGKFGESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 578899999 788999999999999999999877654
No 20
>PLN02411 12-oxophytodienoate reductase
Probab=59.92 E-value=9.7 Score=36.84 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.2
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCee
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIV 222 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~ 222 (249)
.|..||..| ++.-++.|.++++.|+++|.|.=+|-
T Consensus 151 ~pr~mt~~e----I~~ii~~f~~AA~rA~~AGFDGVEIH 185 (391)
T PLN02411 151 KPRALETSE----IPEVVEHYRQAALNAIRAGFDGIEIH 185 (391)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 578999999 88889999999999999999987664
No 21
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=59.76 E-value=17 Score=32.70 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQ 133 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k 133 (249)
+..=|.+|.++++++.. ++++||||=| |=-+|.... .......||+|+++|-++
T Consensus 167 ie~~D~~l~~l~~~~~~----~~~~liiTaD-------Hg~~~~~~~---------------~~Ht~~~VPll~~g~~~~ 220 (252)
T PF01676_consen 167 IERIDRFLGRLLEALDK----EDDLLIITAD-------HGNDETMGH---------------TSHTREPVPLLIYGPGVR 220 (252)
T ss_dssp HHHHHHHHHHHHHHHHH----TTEEEEEEES-------SBSTTTSBS---------------SS-B-B-EEEEEECTTEE
T ss_pred HHHHHHHHHHHHHHHhc----CCCEEEEECC-------CCCccccCC---------------cCCCCceEEEEEEeCCCc
Confidence 45568899999999954 4678999865 422232210 113467899999999777
Q ss_pred CCeE
Q 042607 134 RGTF 137 (249)
Q Consensus 134 ~G~V 137 (249)
.+.+
T Consensus 221 ~~~~ 224 (252)
T PF01676_consen 221 GDSV 224 (252)
T ss_dssp E-SC
T ss_pred cCcc
Confidence 5544
No 22
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=58.52 E-value=31 Score=35.62 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQ 133 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k 133 (249)
+.+-|..|++|+|.|+++-.-+||++|||=|-+--|-|- ...++|-. -+|.|.-..||+++==|=..
T Consensus 429 ~~~vD~~I~~vLe~L~~~~~L~NTvVIITs~HG~eFne~----------~~~ywG~~---t~ysr~qlqVPlvihwpg~~ 495 (600)
T COG3083 429 LREVDSQIGRVLEQLRNSGLLDNTVVIITADHGEEFNEE----------EQNYWGHG---TNYSRYQLQVPLVIHWPGTP 495 (600)
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEECCCCcccCcc----------ccccccCC---CccccceecccEEEEeCCCc
Confidence 667899999999999999999999999997654333211 11234422 34667788999999999999
Q ss_pred CCeEe
Q 042607 134 RGTFT 138 (249)
Q Consensus 134 ~G~V~ 138 (249)
+|.|+
T Consensus 496 ~~~v~ 500 (600)
T COG3083 496 AGRVN 500 (600)
T ss_pred chhhc
Confidence 99996
No 23
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=57.98 E-value=12 Score=35.40 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=31.0
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCe
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQI 221 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~ 221 (249)
.|..||..| +++-++.|.++++.|+++|.|.=+|
T Consensus 123 ~p~~mt~~e----I~~i~~~f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 123 TPRELSEEE----IEQTIEDFARCAALAREAGYDGVEI 156 (353)
T ss_pred CCCCCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 578899998 7788899999999999999999888
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=57.66 E-value=14 Score=38.73 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=27.0
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCee
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIV 222 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~ 222 (249)
+|.+--.+=+..=|++-|.+||||| +|+|++|..+-
T Consensus 624 VPSPaV~klsmarcrrNVdnFLeaC---RkiGVpEa~lC 659 (722)
T KOG0532|consen 624 VPSPAVPKLSMARCRRNVDNFLEAC---RKIGVPEADLC 659 (722)
T ss_pred cCCCccchhHHHHHHHhHHHHHHHH---HHcCCChHhhc
Confidence 5555555555556999999999996 47999987654
No 25
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=57.10 E-value=32 Score=35.19 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=36.5
Q ss_pred ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCC-ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEc
Q 042607 53 DVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGG-FYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFIS 129 (249)
Q Consensus 53 dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GG-fyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivIS 129 (249)
.+..-|..|+++++.|++ ++|++|++ -+||. +.+|- +. .| .++. -+...|.|||+|+..
T Consensus 437 sI~ytD~~lg~ii~~Lk~----~nTivIy~-SDHGe~lge~~--~l---------hg-~~~~-~~~~~~~~VPliv~~ 496 (558)
T PRK11560 437 SVLYVDHFISSVIDQLRD----KKAIVFYA-ADHGESINERE--HL---------HG-TPRE-MAPPEQFRVPMMVWM 496 (558)
T ss_pred HHHHHHHHHHHHHHHHHh----cCeEEEEE-cCCCCcCCCCc--cc---------CC-CCcc-cCCccCeeeCEEEEE
Confidence 356678999999999987 47887766 45554 33331 00 11 1111 122358999999875
No 26
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.59 E-value=12 Score=35.35 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=31.6
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|+.||..| +++-++.|.++++.|+++|.|.=+|-.
T Consensus 130 ~p~~mt~~e----I~~ii~~f~~aA~~a~~aGfDgVeih~ 165 (353)
T cd04735 130 TPRELTHEE----IEDIIDAFGEATRRAIEAGFDGVEIHG 165 (353)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 488999998 778888999999999999999877754
No 27
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=56.02 E-value=24 Score=34.56 Aligned_cols=55 Identities=33% Similarity=0.546 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQ 133 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k 133 (249)
+..=|..|.+++++|. ++++||||=| ||. | |.. .+. +....|||+|+.+|-++
T Consensus 297 le~vD~~Lg~ll~~L~-----~~tllIITAD-HG~--D----p~~--------~~t-------~HTre~VPlIi~gp~i~ 349 (381)
T TIGR01696 297 LELFDRRLPELFSLLR-----EDDLLIITAD-HGN--D----PTW--------TGT-------DHTREYIPVLVYSPKVK 349 (381)
T ss_pred HHHHHHHHHHHHHHhc-----cCCEEEEECC-CCC--C----CCC--------CCC-------cCCCCCEeEEEEECCCC
Confidence 4456788999999986 3678888844 443 1 110 000 11235999999999877
Q ss_pred CC
Q 042607 134 RG 135 (249)
Q Consensus 134 ~G 135 (249)
+|
T Consensus 350 ~g 351 (381)
T TIGR01696 350 PG 351 (381)
T ss_pred CC
Confidence 66
No 28
>PRK10649 hypothetical protein; Provisional
Probab=55.96 E-value=39 Score=34.45 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCC-ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEc-c
Q 042607 53 DVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGG-FYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFIS-P 130 (249)
Q Consensus 53 dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GG-fyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivIS-P 130 (249)
.+..-|..|+++++.|+++ .++|+||.+= +||. +||- +. .+..|... ..+...+.|||+|+-+ |
T Consensus 432 sI~y~D~~l~~ii~~Lk~~--~~nt~iiy~S-DHGe~~~~~---~~------~~~lG~~~--~~~~~~~~~VP~ii~~s~ 497 (577)
T PRK10649 432 ANLYNDHVVASLIKDFKAT--DPNGFLVYFS-DHGEEVYDT---PP------HKTQGRNE--DNPTRHMYTIPFLLWTSE 497 (577)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEEC-CCCcccccC---Cc------ccccCCCC--CCCCcccceecEEEEECH
Confidence 4677899999999999986 4778776644 4554 3331 00 01122100 0112458999999885 5
No 29
>PRK05434 phosphoglyceromutase; Provisional
Probab=55.16 E-value=44 Score=33.87 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPW 131 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw 131 (249)
+..=|..|.+++++|++... +|||| =+||.. +..-.+.. | .+. ....+.|||+|+.+|-
T Consensus 414 Ie~vD~~LGrll~aLk~~g~----ivIIT-ADHGn~-e~m~d~~t---------g-~~~---~~HT~~~VPlII~~p~ 472 (507)
T PRK05434 414 VEAVDECLGRVVDAVLKVGG----TLLIT-ADHGNA-EQMIDPET---------G-QPH---TAHTTNPVPFILVGGK 472 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCC----EEEEE-cCCCcc-cccccCCC---------C-Ccc---cCCCCeeeEEEEEECC
Confidence 55568899999999976633 56666 455532 11100000 0 011 1234789999999983
No 30
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=54.70 E-value=14 Score=34.93 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=31.5
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|..||..| ++.-++.|.+|+++|+++|.|.=+|-.
T Consensus 127 ~~~~mt~~e----I~~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 127 VPKAMEEED----IEEIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 477899999 778889999999999999999877765
No 31
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.61 E-value=14 Score=34.48 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=31.1
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|..||..| +++-++.|.+++++|+++|.|.=+|-.
T Consensus 135 ~p~~mt~~e----I~~~i~~~~~aA~ra~~aGfDgVeih~ 170 (338)
T cd04733 135 KPRAMTEEE----IEDVIDRFAHAARLAQEAGFDGVQIHA 170 (338)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEch
Confidence 478899888 778888999999999999999877643
No 32
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=54.16 E-value=15 Score=34.84 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=31.7
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|+.||..| +++-++.|.++++.|+++|.|.=+|-.
T Consensus 138 ~p~~mt~~e----I~~ii~~f~~aA~~a~~aGfDgVeih~ 173 (338)
T cd02933 138 TPRALTTEE----IPGIVADFRQAARNAIEAGFDGVEIHG 173 (338)
T ss_pred CCCCCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 588999998 778889999999999999999877754
No 33
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.27 E-value=15 Score=35.34 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.4
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEcc
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVVVP 225 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~~~ 225 (249)
.|..||..| ++.-++.|.++++.|+++|.|.=+|-.-.
T Consensus 130 ~p~~mt~~e----I~~ii~~f~~AA~~a~~aGfDgVeih~ah 167 (361)
T cd04747 130 VGREMTEAD----IDDVIAAFARAAADARRLGFDGIELHGAH 167 (361)
T ss_pred CCccCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 478899999 77888999999999999999987776543
No 34
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=51.73 E-value=17 Score=34.51 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=31.7
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEc
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVVV 224 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~~ 224 (249)
.|..||..| +++-++.|.++++.|+++|.|.=+|-.-
T Consensus 128 ~p~~mt~ee----I~~ii~~f~~aA~~a~~aGfDgVeih~a 164 (337)
T PRK13523 128 TPVEMTKEQ----IKETVLAFKQAAVRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 578899988 7788889999999999999998777543
No 35
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=51.54 E-value=17 Score=33.91 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.5
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCee
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIV 222 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~ 222 (249)
.|+.||..| +++-++.|.+++++|+++|.|.=+|-
T Consensus 140 ~p~~mt~~e----I~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 140 TPRELTREE----IAEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 578999888 77888899999999999999987764
No 36
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=51.15 E-value=11 Score=35.36 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 185 VEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 185 ~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
+..||..| +++-++.|.++++.|+++|.|.=+|-.
T Consensus 136 ~~~mt~~e----I~~ii~~f~~AA~~A~~AGfDGVEIH~ 170 (341)
T PF00724_consen 136 PREMTEEE----IEEIIEDFAQAARRAKEAGFDGVEIHA 170 (341)
T ss_dssp EEE--HHH----HHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CeeCCHHH----HHHHHHHHHHHHHHHHHhccCeEeecc
Confidence 37889888 788899999999999999999887765
No 37
>PRK05362 phosphopentomutase; Provisional
Probab=50.48 E-value=58 Score=32.00 Aligned_cols=53 Identities=34% Similarity=0.481 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQ 133 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k 133 (249)
+..=|..+.+++++|.. +|+||||=| ||. | |.. .+. +..+.|||+|+.+|=++
T Consensus 305 le~~D~~lg~ll~~L~~-----~tlliiTaD-HG~--d----~t~--------~gt-------~HT~e~VPlIi~gp~v~ 357 (394)
T PRK05362 305 LEEFDARLPELLAALKE-----DDLLIITAD-HGN--D----PTW--------PGT-------DHTREYVPLLVYGPKFK 357 (394)
T ss_pred HHHHHHHHHHHHHHhcc-----CCEEEEeCC-CCC--C----CCC--------CCC-------CCCCCceeEEEEECCCC
Confidence 45568889999999963 689999844 332 1 110 010 12468999999999765
No 38
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=47.86 E-value=49 Score=33.59 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=45.8
Q ss_pred HHHHHhcCCCCCeEEEeccccCCCCCCCCCCCCCC------ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccc
Q 042607 18 FKKDCEEGKLPNYVVVEQRYFDLLSVPANDDHPSH------DVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYD 91 (249)
Q Consensus 18 F~~D~~~G~LP~vSfI~P~~~d~~~~~~nd~HP~~------dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyD 91 (249)
..+.++++ =|.|.++.=.-.|. -+|-+. -+..=|..|.+++++|...-. +||||= +||..-+
T Consensus 373 ~i~~I~~~-k~dfi~vnfan~Dm------vGHtg~~~a~v~AIE~vD~~LGrIl~aLke~G~----~VIiTA-DHGnae~ 440 (501)
T TIGR01307 373 VLEAIAQG-KFDLIVVNFANPDM------VGHTGNFEAAIKAVEALDVCLGRIVEACKKVGG----TLFLTA-DHGNAEE 440 (501)
T ss_pred HHHHHhcc-CCCEEEEECCCccc------ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEc-CCCChhh
Confidence 44445554 37777776111111 234332 345568889999999986543 455554 4554211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEcc
Q 042607 92 HVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISP 130 (249)
Q Consensus 92 HV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISP 130 (249)
... + .| .+. . ...+.|||+|+.+|
T Consensus 441 m~d-~-------~g----~p~--t-~HT~~~VP~Ii~~p 464 (501)
T TIGR01307 441 MID-E-------NG----NPH--T-AHTTNPVPFVCVGA 464 (501)
T ss_pred ccC-C-------CC----Ccc--c-CCCCeEeeEEEEEC
Confidence 000 0 11 011 0 13479999999998
No 39
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=40.21 E-value=19 Score=32.14 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHcCCCC---CCeeEccCCCCCCCCCchhhhhhhccccc
Q 042607 193 GAKYVEDAFKKFR--GQCEKAEAEGVDE---SQIVVVPTPTTKQRKSKSFGRKLLSCLAC 247 (249)
Q Consensus 193 ~~~y~~~a~~~f~--~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (249)
|++++.-+||+-| ++..++.++|.+. ++++.+.-. ....+-.+--||||.++
T Consensus 42 ArAW~Dp~fk~~Ll~d~~aa~~elg~~g~~~~~~~~vent---~~vHN~vVCTLCSCyP~ 98 (185)
T TIGR01323 42 AKAWVDPEFRALLLKDATAACAQFGYTGPQGEYIVALENT---PGVHNVVVCTLCSCYPW 98 (185)
T ss_pred hHHhcCHHHHHHHHhChHHHHHHcCCCCCCCceEEEEeCC---CCceeEEEeccccccCc
Confidence 5667888888776 5555666788855 666666532 22223344456666554
No 40
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=38.20 E-value=32 Score=35.93 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=30.9
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeE
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVV 223 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~ 223 (249)
.|..||..| +++-++.|.++++.|+++|.|.=+|-.
T Consensus 537 ~p~~mt~~e----I~~~i~~f~~aA~~a~~aGfDgveih~ 572 (765)
T PRK08255 537 VPREMTRAD----MDRVRDDFVAAARRAAEAGFDWLELHC 572 (765)
T ss_pred CCCcCCHHH----HHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 567899888 778889999999999999999877754
No 41
>PRK12383 putative mutase; Provisional
Probab=36.13 E-value=89 Score=30.94 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQ 133 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k 133 (249)
+..=|..+.+++++|. ++++||||=| ||. +|..+ + .+....|||+|+.+|-++
T Consensus 313 iE~iD~~lg~ll~~L~-----~~~lliITaD-HG~------d~~~~--------~-------t~HTre~VPlLi~gp~i~ 365 (406)
T PRK12383 313 LEVVDRNLARLLEAMT-----PDDCLVVMAD-HGN------DPTIG--------H-------SHHTREVVPLLVYQKGLQ 365 (406)
T ss_pred HHHHHHHHHHHHHHhc-----cCCEEEEEcC-CCC------CCCCC--------C-------cCCCCcceEEEEEECCcc
Confidence 4556778889999986 3788888844 332 12110 0 012357999999999765
Q ss_pred C
Q 042607 134 R 134 (249)
Q Consensus 134 ~ 134 (249)
+
T Consensus 366 ~ 366 (406)
T PRK12383 366 A 366 (406)
T ss_pred c
Confidence 4
No 42
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=35.07 E-value=87 Score=32.17 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCC------CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeE
Q 042607 53 DVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHG------GFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTI 126 (249)
Q Consensus 53 dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~G------GfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~i 126 (249)
.+..-|.+|.+|++-|+++.. ++++ |=+-+|| |.|.|-.|=.. . | .-..+||+|
T Consensus 424 tilYtD~~L~~vi~~Lk~~~~--~~~l-iY~SDHGEslgEn~~ylhg~p~~~-a--------p--------~~q~~VP~i 483 (555)
T COG2194 424 TILYTDYFLSKLIDQLKDKKD--NTSL-IYFSDHGESLGENGPYLHGTPYEI-A--------P--------QEQYHVPFI 483 (555)
T ss_pred hhhhhHHHHHHHHHHHHhCCC--CeEE-EEEcCccHhhccCCcccccCcccC-C--------c--------hhheeeeEE
Confidence 577889999999999999998 5444 4445555 66777442110 0 0 237899999
Q ss_pred EEcc
Q 042607 127 FISP 130 (249)
Q Consensus 127 vISP 130 (249)
+-+.
T Consensus 484 ~w~S 487 (555)
T COG2194 484 VWSS 487 (555)
T ss_pred EEEC
Confidence 8655
No 43
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=34.33 E-value=57 Score=21.99 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=16.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHH
Q 042607 185 VEEMTVAEGAKYVEDAFKKFRGQ 207 (249)
Q Consensus 185 ~~~~~~~~~~~y~~~a~~~f~~~ 207 (249)
....+..|-.++++.||..|+.+
T Consensus 32 ~~~~s~~e~~~~v~~aV~~FL~a 54 (55)
T PF14246_consen 32 APPPSAEEIERIVESAVDMFLRA 54 (55)
T ss_dssp S----HHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHhh
Confidence 34456788889999999999976
No 44
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=32.15 E-value=39 Score=31.54 Aligned_cols=33 Identities=30% Similarity=0.603 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCc--cccC
Q 042607 57 GQKFVKEVYEALRSSPQWNEILFIITYDEHGGF--YDHV 93 (249)
Q Consensus 57 G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGf--yDHV 93 (249)
.+....++++.|+. ++- -+|||||++||+ =||+
T Consensus 106 ~~~~~~~L~~iIr~---~~P-dvVvT~d~~GgygHpDH~ 140 (283)
T TIGR03446 106 LEEAAEPLVRVIRE---FRP-HVITTYDENGGYPHPDHI 140 (283)
T ss_pred HHHHHHHHHHHHHH---cCC-EEEEecCCCCCCCChhHH
Confidence 45667777777764 332 378999999864 4553
No 45
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=31.22 E-value=16 Score=27.55 Aligned_cols=27 Identities=7% Similarity=0.313 Sum_probs=22.5
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHHHH
Q 042607 183 KLVEEMTVAEGAKYVEDAFKKFRGQCE 209 (249)
Q Consensus 183 ~l~~~~~~~~~~~y~~~a~~~f~~~~~ 209 (249)
.||+.|++.+-..|+..++++..+.-+
T Consensus 19 ~LP~~~~l~~l~~fl~~~l~~~~~~~~ 45 (109)
T PF10367_consen 19 LLPDDWPLSDLSDFLCKSLRKYSNRKR 45 (109)
T ss_pred hCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999988776433
No 46
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=29.24 E-value=1.8e+02 Score=28.29 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCC-------CCCCCC-----C-CCCCCC
Q 042607 53 DVSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDI-------VGPEPY-----N-FKFDRL 119 (249)
Q Consensus 53 dv~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~-------~g~~p~-----~-f~f~~l 119 (249)
.+.+-|..|+.+++.+. .+++|+||||=|=.-|+ --+..+....+. .+. ....|+ . ..-...
T Consensus 275 ~l~~~D~av~~~l~~l~---~~~dTLiIvTADHg~~~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~Ht 349 (384)
T cd00016 275 ETLAFDDAVEAALDFAK---KDGDTLVVVTADHSHGG-TILGYAGRGNPI-LGLADAPELDVDGLPYTTLTYANTTGTHG 349 (384)
T ss_pred HHHHHHHHHHHHHHHhh---CCCCeEEEEECCCCCCc-cccCCCCCCCcc-cccccccccccCCCCceEEEecCCCCCCc
Confidence 34556778888888886 47899999998865443 111111111000 010 011111 1 123456
Q ss_pred cCceeeEEEccCCC--CCeEec
Q 042607 120 GVRVPTIFISPWIQ--RGTFTL 139 (249)
Q Consensus 120 G~RVP~ivISPw~k--~G~V~~ 139 (249)
|.=||.+...|++. .|+.++
T Consensus 350 g~~Vpv~a~Gp~a~~f~g~~en 371 (384)
T cd00016 350 GEDVPVFAYGPGSHLFRGVMEN 371 (384)
T ss_pred CceeeEEeecCCccccCcceec
Confidence 88899999999984 454443
No 47
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=28.83 E-value=1.8e+02 Score=23.06 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHhhhhcCCCCCCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEcc
Q 042607 164 LVQMAATLNGDYKKDIYPHKLVEEMTVAEGAKYVEDAFKKFRGQCEKAEAEGVDESQIVVVP 225 (249)
Q Consensus 164 l~~la~~l~~~~~~~~~p~~l~~~~~~~~~~~y~~~a~~~f~~~~~~~~~~g~~~~~~~~~~ 225 (249)
||-|-++|.-+.... +.. -+..+ .+=|+.|+-+|+.+|+. ++|.++++..++.
T Consensus 16 Lc~lfNal~p~~~L~-----v~~-~~~~~-~k~~K~ai~~Fi~ack~--~L~~~~~e~FtIs 68 (89)
T PF06395_consen 16 LCVLFNALQPEEPLP-----VDP-VSSDD-LKVCKKAIYKFIQACKQ--ELGFPDEELFTIS 68 (89)
T ss_pred HHHHHHccCCccCCC-----CCC-CCcch-HHHHHHHHHHHHHHHHH--hcCCCccceeeee
Confidence 777777777654432 111 22222 34589999999999998 4688888877764
No 48
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=27.92 E-value=79 Score=29.64 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=36.4
Q ss_pred cCCcccHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCCCCeeEcc
Q 042607 184 LVEEMTVAEGAKYVED-----AFKKFRGQCEKAEAEGVDESQIVVVP 225 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~-----a~~~f~~~~~~~~~~g~~~~~~~~~~ 225 (249)
+=...+..|+.+++++ -..+++++|.+|.+.|+...+|+.-+
T Consensus 198 ~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~ 244 (265)
T COG0548 198 LISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGR 244 (265)
T ss_pred eeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCC
Confidence 5567889999999885 46799999999999999999998865
No 49
>PF15605 Toxin_52: Putative toxin 52
Probab=27.50 E-value=20 Score=29.30 Aligned_cols=11 Identities=36% Similarity=1.063 Sum_probs=8.6
Q ss_pred eCCCCccccCC
Q 042607 84 DEHGGFYDHVP 94 (249)
Q Consensus 84 DE~GGfyDHV~ 94 (249)
-.+||+||||-
T Consensus 40 Kp~GgywdHlq 50 (103)
T PF15605_consen 40 KPDGGYWDHLQ 50 (103)
T ss_pred CCCCCccHHHH
Confidence 35699999976
No 50
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.16 E-value=69 Score=31.26 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=34.7
Q ss_pred ccCCcccHHHHHH-HHHHHHHHHHHHHHHHHHcC-C---CCCCeeEcc
Q 042607 183 KLVEEMTVAEGAK-YVEDAFKKFRGQCEKAEAEG-V---DESQIVVVP 225 (249)
Q Consensus 183 ~l~~~~~~~~~~~-y~~~a~~~f~~~~~~~~~~g-~---~~~~~~~~~ 225 (249)
.-++..++.|.+. |.|.|+.-+.++.++|++.- . |-+.||.+.
T Consensus 58 ~y~e~~~f~ekN~ifie~a~~l~v~a~r~aL~~~~l~pedId~vv~vt 105 (356)
T COG3424 58 WYREPHGFGEKNEIFIEEAVPLGVDALRRALDGSPLRPEDIDAVVTVT 105 (356)
T ss_pred hccCCCChhhhhhhHHHHHHHHHHHHHHHHhccCCCCHHHCcEEEEEe
Confidence 3688999999999 99999999999999999853 3 444555543
No 51
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=21.68 E-value=90 Score=29.02 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCcCcCceEEEEEEeCCCC--ccccC
Q 042607 58 QKFVKEVYEALRSSPQWNEILFIITYDEHGG--FYDHV 93 (249)
Q Consensus 58 ~~~l~~v~eAL~~sP~W~~TliIITyDE~GG--fyDHV 93 (249)
+..++++++.|+. ++=. +|||||++|| .=||+
T Consensus 109 ~e~~~~l~~~Ir~---~~Pd-vViT~~p~g~~~HpDH~ 142 (284)
T TIGR03445 109 DEAAGALVAVIRE---VRPH-VVVTYDPNGGYGHPDHI 142 (284)
T ss_pred HHHHHHHHHHHHH---hCCc-EEEecCCCCCCCCchhH
Confidence 4456677777754 3322 7788999985 34554
No 52
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=21.13 E-value=1.3e+02 Score=27.33 Aligned_cols=39 Identities=33% Similarity=0.332 Sum_probs=29.8
Q ss_pred ccHHHHHH-HHHHHHHHHHHHHHHHHH-cCCCCCCeeEccC
Q 042607 188 MTVAEGAK-YVEDAFKKFRGQCEKAEA-EGVDESQIVVVPT 226 (249)
Q Consensus 188 ~~~~~~~~-y~~~a~~~f~~~~~~~~~-~g~~~~~~~~~~~ 226 (249)
-++.+.++ |.+.|.+-..+|+++|++ .|.+.++|-++--
T Consensus 87 ps~~~R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~ 127 (226)
T PF00195_consen 87 PSLAERNALYAEEAPPLAEEAARKALAEAGLDPSDITHLVT 127 (226)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEE
Confidence 35666655 999999999999999986 5998888866653
No 53
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=20.98 E-value=2.2e+02 Score=28.06 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCC
Q 042607 54 VSEGQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQ 133 (249)
Q Consensus 54 v~~G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k 133 (249)
+..=|..+.++++++.. ++.+||||=| |-- |.. . ....+.-||+|+.+|.++
T Consensus 320 iE~iD~~l~~il~~l~~----~~~~liITaD-------Hgt-p~~-------~---------~~HT~~pVP~ii~g~~v~ 371 (412)
T PRK04024 320 IEKIDKMLGYILDNLDL----DEVYIAVTGD-------HST-PVE-------V---------KDHSGDPVPILIYGPGVR 371 (412)
T ss_pred HHHHHHHHHHHHHHhhc----CCCEEEEecC-------CCC-Ccc-------c---------ccCCCCCEeEEEEcCCcc
Confidence 44456778888888753 2558888754 511 211 1 124467799999999988
Q ss_pred CCeEecC
Q 042607 134 RGTFTLP 140 (249)
Q Consensus 134 ~G~V~~~ 140 (249)
..-|+.+
T Consensus 372 ~d~~~~f 378 (412)
T PRK04024 372 VDDVEKF 378 (412)
T ss_pred CCCCCcc
Confidence 7666544
No 54
>KOG3731 consensus Sulfatases [Carbohydrate transport and metabolism]
Probab=20.84 E-value=2e+02 Score=29.61 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCcCcCceEEEEEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCceeeEEEccCCCCCe
Q 042607 57 GQKFVKEVYEALRSSPQWNEILFIITYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFKFDRLGVRVPTIFISPWIQRGT 136 (249)
Q Consensus 57 G~~~l~~v~eAL~~sP~W~~TliIITyDE~GGfyDHV~PP~~~~p~pDg~~g~~p~~f~f~~lG~RVP~ivISPw~k~G~ 136 (249)
-+.-|..+++-|..--+-++|.||-|=|- || |.--= |.+-+-...|.| -.|||++|=+|=++++.
T Consensus 282 vd~sve~l~n~l~elgeLdnTyivytsDh--Gy--hlGqf--------gl~kgks~pyEf---diRVPf~iRgP~v~~~~ 346 (541)
T KOG3731|consen 282 VDDSVERLYNLLGELGELDNTYIVYTSDH--GY--HLGQF--------GLWKGKSMPYEF---DIRVPFLIRGPGVAPNK 346 (541)
T ss_pred HHHHHHHHHHHHHHhhcccceEEEEEcCC--cc--ccccc--------ccccCCCCceeE---eeeeeEEeeCCCCCccc
Confidence 35567788888888888889999998775 34 32100 111111111333 58999999999998886
Q ss_pred E
Q 042607 137 F 137 (249)
Q Consensus 137 V 137 (249)
+
T Consensus 347 ~ 347 (541)
T KOG3731|consen 347 T 347 (541)
T ss_pred c
Confidence 6
No 55
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=20.33 E-value=47 Score=31.95 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=64.4
Q ss_pred CCCCcCceeeEEEccCCCCCeEe---cCccccc-cccCCcc--------cCCCCCccHHHHHHHhhhhcCCCCCCCCccc
Q 042607 116 FDRLGVRVPTIFISPWIQRGTFT---LPEPTLK-LRDGEAK--------EDAKLTDFQQELVQMAATLNGDYKKDIYPHK 183 (249)
Q Consensus 116 f~~lG~RVP~ivISPw~k~G~V~---~~~~vl~-lr~~~~~--------~~~~ls~~~~~l~~la~~l~~~~~~~~~p~~ 183 (249)
|+.+|.|+|.++=--....|..- .++..+. ||..++. .-..|.+.-+++.+++..+..-++...+|+.
T Consensus 182 ~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~ 261 (311)
T COG0646 182 FEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNA 261 (311)
T ss_pred HHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcc
Confidence 56789999998876666667652 2333322 4443311 1124555556677777788888888888887
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHH
Q 042607 184 LVEEMTVAEGAKYVEDAFKKFRGQC 208 (249)
Q Consensus 184 l~~~~~~~~~~~y~~~a~~~f~~~~ 208 (249)
..+.+-..+--.|+.+.++.|.+++
T Consensus 262 ~g~~~~Y~~~p~~~a~~~~~f~~~g 286 (311)
T COG0646 262 FGERAVYDLTPEYMAEALAEFAEEG 286 (311)
T ss_pred cCCccccCCCHHHHHHHHHHHHHhC
Confidence 7777777888889999999999886
Done!