Query 042608
Match_columns 192
No_of_seqs 187 out of 1121
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 5.3E-25 1.8E-29 154.0 6.5 60 19-78 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 91.0 0.19 6.4E-06 36.1 3.4 25 15-39 3-28 (77)
3 3jtz_A Integrase; four strande 85.8 2.2 7.5E-05 30.5 6.2 44 23-66 28-75 (88)
4 1u3e_M HNH homing endonuclease 82.4 0.35 1.2E-05 38.1 0.8 38 20-60 109-146 (174)
5 3ju0_A Phage integrase; four s 78.2 5.2 0.00018 29.6 6.0 44 23-66 28-75 (108)
6 1z1b_A Integrase; protein-DNA 70.7 5.2 0.00018 32.9 4.8 41 22-66 15-55 (356)
7 1x60_A Sporulation-specific N- 64.6 6.5 0.00022 26.4 3.5 33 32-64 36-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 61.3 8.2 0.00028 26.3 3.6 33 32-64 36-68 (81)
9 1b69_A Protein (integrase); in 40.4 32 0.0011 23.8 3.8 24 15-38 7-30 (69)
10 2ftc_I Mitochondrial ribosomal 33.4 63 0.0022 24.2 4.8 36 31-68 80-115 (118)
11 1vq8_H 50S ribosomal protein L 29.6 43 0.0015 27.0 3.4 35 31-68 123-159 (171)
12 1ffk_F Ribosomal protein L10E; 29.5 71 0.0024 25.3 4.7 44 22-68 98-145 (157)
13 1kcq_A Gelsolin, brevin, ADF, 28.5 94 0.0032 21.9 4.9 35 31-65 29-63 (104)
14 2pa2_A 60S ribosomal protein L 24.3 48 0.0016 26.2 2.8 35 31-68 94-130 (151)
15 1svq_A Severin; actin-binding; 23.7 93 0.0032 22.4 4.1 34 32-65 40-73 (114)
16 3r8s_M 50S ribosomal protein L 20.3 1.1E+02 0.0038 23.5 4.1 35 31-68 92-126 (136)
17 2zkr_h 60S ribosomal protein L 20.3 79 0.0027 26.3 3.4 52 31-85 125-186 (214)
18 3j21_N 50S ribosomal protein L 20.2 78 0.0027 25.7 3.3 37 31-69 122-159 (181)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=5.3e-25 Score=153.97 Aligned_cols=60 Identities=50% Similarity=0.838 Sum_probs=56.6
Q ss_pred ceeEEEECCCCcEEEEEEeCCC-CcEEeeccccCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 042608 19 RFLGVRQRPSGRWVAEIKESSQ-KLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHH 78 (192)
Q Consensus 19 ~yrGV~~r~~GkW~A~I~~~~~-kkri~LGtFdt~EEAA~AYd~Aa~~~~G~~a~~NFp~~ 78 (192)
+||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999899999999999874 68999999999999999999999999999999999964
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.02 E-value=0.19 Score=36.07 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCCCceeEEEECC-CCcEEEEEEeCC
Q 042608 15 RSKSRFLGVRQRP-SGRWVAEIKESS 39 (192)
Q Consensus 15 ~n~S~yrGV~~r~-~GkW~A~I~~~~ 39 (192)
..+|+|+||+|.+ .+.|.|+-.+++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g 28 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGA 28 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETT
T ss_pred CCCCCCCcEEeecCCceEEEEEecCC
Confidence 5689999999877 799999999753
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=85.82 E-value=2.2 Score=30.48 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=34.6
Q ss_pred EEECCCC--cEEEEEEeCCCCcEEeecccc--CHHHHHHHHHHHHHHh
Q 042608 23 VRQRPSG--RWVAEIKESSQKLRLWLGTFD--KAEEAAMAYDIAARLL 66 (192)
Q Consensus 23 V~~r~~G--kW~A~I~~~~~kkri~LGtFd--t~EEAA~AYd~Aa~~~ 66 (192)
++..+.| .|.-+.+.+++.+++-||.|. |.+||....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4556654 499998887888899999997 7888888877777666
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=82.45 E-value=0.35 Score=38.14 Aligned_cols=38 Identities=8% Similarity=-0.185 Sum_probs=28.8
Q ss_pred eeEEEECCCCcEEEEEEeCCCCcEEeeccccCHHHHHHHHH
Q 042608 20 FLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYD 60 (192)
Q Consensus 20 yrGV~~r~~GkW~A~I~~~~~kkri~LGtFdt~EEAA~AYd 60 (192)
++||.+.+.++|.+.|... + .++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence 4677542246788999875 3 467999999999999963
No 5
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=78.21 E-value=5.2 Score=29.58 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=34.0
Q ss_pred EEECCCC--cEEEEEEeCCCCcEEeecccc--CHHHHHHHHHHHHHHh
Q 042608 23 VRQRPSG--RWVAEIKESSQKLRLWLGTFD--KAEEAAMAYDIAARLL 66 (192)
Q Consensus 23 V~~r~~G--kW~A~I~~~~~kkri~LGtFd--t~EEAA~AYd~Aa~~~ 66 (192)
++..+.| .|.-+.+.+++.+++-||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4556654 499998887888899999997 6788887777766665
No 6
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=70.66 E-value=5.2 Score=32.92 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=30.2
Q ss_pred EEEECCCCcEEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHHh
Q 042608 22 GVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLL 66 (192)
Q Consensus 22 GV~~r~~GkW~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~~ 66 (192)
||++++.|.|..+.. ..++++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 687777889987765 3556788996 8888887766655444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=64.64 E-value=6.5 Score=26.39 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=23.3
Q ss_pred EEEEEeCCCCcEEeeccccCHHHHHHHHHHHHH
Q 042608 32 VAEIKESSQKLRLWLGTFDKAEEAAMAYDIAAR 64 (192)
Q Consensus 32 ~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~ 64 (192)
.+.|.....--||++|.|.+.++|..+.++...
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344443333357999999999999988776554
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=61.31 E-value=8.2 Score=26.25 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=24.5
Q ss_pred EEEEEeCCCCcEEeeccccCHHHHHHHHHHHHH
Q 042608 32 VAEIKESSQKLRLWLGTFDKAEEAAMAYDIAAR 64 (192)
Q Consensus 32 ~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~ 64 (192)
.+.|.....--||++|.|.+.++|..+.++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 455554444468999999999999988776655
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=40.35 E-value=32 Score=23.82 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.8
Q ss_pred CCCCceeEEEECCCCcEEEEEEeC
Q 042608 15 RSKSRFLGVRQRPSGRWVAEIKES 38 (192)
Q Consensus 15 ~n~S~yrGV~~r~~GkW~A~I~~~ 38 (192)
.+.--+.|+.+++.|+|+.++.+.
T Consensus 7 kgr~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 7 RGRILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp SSSCCCTTEEECSSSCEEEEEECT
T ss_pred CCCccCCCeEEccCCcEEEEEEcC
Confidence 345667799999999999999876
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=33.44 E-value=63 Score=24.18 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=27.9
Q ss_pred EEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHHhcC
Q 042608 31 WVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRG 68 (192)
Q Consensus 31 W~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~~~G 68 (192)
|+|+|.. +..-+-++...+++.|.+|...|+.+|-+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999984 33345566668899999999999998743
No 11
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=29.61 E-value=43 Score=27.02 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.1
Q ss_pred EEEEEEeCCCCcEEe-ec-cccCHHHHHHHHHHHHHHhcC
Q 042608 31 WVAEIKESSQKLRLW-LG-TFDKAEEAAMAYDIAARLLRG 68 (192)
Q Consensus 31 W~A~I~~~~~kkri~-LG-tFdt~EEAA~AYd~Aa~~~~G 68 (192)
|+|+|.. ++-++ +. .=.+++.|.+|...|+.+|-+
T Consensus 123 wvArVk~---G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ 159 (171)
T 1vq8_H 123 TAARVQA---GEQLFTAYCNVEDAEHVKEAFRRAYNKITP 159 (171)
T ss_dssp EEEEECT---TCEEEEEEECTTTHHHHHHHHHHHGGGSSS
T ss_pred EEEEECC---CCEEEEEECcCCCHHHHHHHHHHHHhhCCC
Confidence 9999983 32233 22 237899999999999988744
No 12
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=29.52 E-value=71 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=29.4
Q ss_pred EEEECC-CCc---EEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHHhcC
Q 042608 22 GVRQRP-SGR---WVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRG 68 (192)
Q Consensus 22 GV~~r~-~Gk---W~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~~~G 68 (192)
.++.++ .|+ |+|+|.. ++-++--.-..++.|.+|...|+.+|-+
T Consensus 98 etrMg~gkG~p~~wvArVk~---G~ilfei~gv~~~~A~eAlr~A~~KlP~ 145 (157)
T 1ffk_F 98 GDGMRAPFGKSVGTAARSHG---ANHDFIAWVNPDPAVEFAWRRAYMKVTP 145 (157)
T ss_pred cccccCCCCCccEEEEEEcC---CCEEEEEeccCHHHHHHHHHHHHhhCCC
Confidence 455444 343 9999983 3334433445777999999999998854
No 13
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=28.51 E-value=94 Score=21.89 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=29.5
Q ss_pred EEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHH
Q 042608 31 WVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARL 65 (192)
Q Consensus 31 W~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~ 65 (192)
--+.|-+.+....+|.|...+..|..+|-+.|...
T Consensus 29 ~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 29 GDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp TSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35788887788899999999999999998887554
No 14
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=24.28 E-value=48 Score=26.18 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=25.4
Q ss_pred EEEEEEeCCCCcEE-eecc-ccCHHHHHHHHHHHHHHhcC
Q 042608 31 WVAEIKESSQKLRL-WLGT-FDKAEEAAMAYDIAARLLRG 68 (192)
Q Consensus 31 W~A~I~~~~~kkri-~LGt-Fdt~EEAA~AYd~Aa~~~~G 68 (192)
|+|+|.. ++-+ -+.. =.+++.|.+|...|+.+|-+
T Consensus 94 wvArVk~---G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ 130 (151)
T 2pa2_A 94 TVARVHI---GQVIMSIRTKLQNKEHVIEALRRAKFKFPG 130 (151)
T ss_dssp CEEEECT---TBEEEEEEECGGGHHHHHHHHHHHGGGSSS
T ss_pred EEEEECC---CCEEEEEECCCCCHHHHHHHHHHHHhhCCC
Confidence 9999983 3223 3332 26899999999999999844
No 15
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=23.66 E-value=93 Score=22.43 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=28.5
Q ss_pred EEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHH
Q 042608 32 VAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARL 65 (192)
Q Consensus 32 ~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~ 65 (192)
-+.|-+.+....+|.|...+..|-++|-+.|...
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3677777778899999999999999998877654
No 16
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=20.28 E-value=1.1e+02 Score=23.45 Aligned_cols=35 Identities=31% Similarity=0.288 Sum_probs=26.9
Q ss_pred EEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHHhcC
Q 042608 31 WVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRG 68 (192)
Q Consensus 31 W~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~~~G 68 (192)
|+|.|.. +..-+-++. .+++.|.+|...|+.+|-+
T Consensus 92 wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999984 333455666 5999999999999988743
No 17
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.28 E-value=79 Score=26.34 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=25.9
Q ss_pred EEEEEEeCCCCcEE-eecc-ccCHHHHHHHHHHHHHHhcCCC--------CCCCCCCCCccCchh
Q 042608 31 WVAEIKESSQKLRL-WLGT-FDKAEEAAMAYDIAARLLRGRN--------AKTNFIHHGIINFHE 85 (192)
Q Consensus 31 W~A~I~~~~~kkri-~LGt-Fdt~EEAA~AYd~Aa~~~~G~~--------a~~NFp~~~~~~~~~ 85 (192)
|+|+|.. ++-+ -+.. =.+++.|.+|...|+.+|-+.- .-++|+...|.+...
T Consensus 125 wvArVkp---GqilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~~~gft~~~~~~~~~~~~ 186 (214)
T 2zkr_h 125 TVAKVHI---GQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVA 186 (214)
T ss_dssp EEEEECT---TCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC-----------------
T ss_pred EEEEECC---CCEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCccccCHHHHHHHHH
Confidence 9999983 3223 2322 3789999999999999984422 224555555554443
No 18
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.17 E-value=78 Score=25.72 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=26.1
Q ss_pred EEEEEEeCCCCcEEeecc-ccCHHHHHHHHHHHHHHhcCC
Q 042608 31 WVAEIKESSQKLRLWLGT-FDKAEEAAMAYDIAARLLRGR 69 (192)
Q Consensus 31 W~A~I~~~~~kkri~LGt-Fdt~EEAA~AYd~Aa~~~~G~ 69 (192)
|+|+|.. +..-+-+.+ -.++|.|.+|...|+.+|-+.
T Consensus 122 wvArVk~--Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~ 159 (181)
T 3j21_N 122 LAARLKK--DQKILSIRVNRQHLKFAIEGARRAAMKFPCK 159 (181)
T ss_dssp CEEEECS--SEEEEEEEECSTTHHHHHHHHHHHHHSSSSC
T ss_pred EEEEEcC--CCEEEEEEecCCCHHHHHHHHHHHhccCCCC
Confidence 9999983 222223333 257999999999999988544
Done!