Query 042609
Match_columns 540
No_of_seqs 674 out of 2922
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.6E-59 1.4E-63 499.3 50.3 367 148-520 424-796 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.9E-58 1.7E-62 491.0 48.8 367 161-537 409-791 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.7E-55 8E-60 467.5 36.9 351 156-527 156-508 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1E-52 2.2E-57 459.2 38.9 232 157-401 221-452 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 9.1E-52 2E-56 451.7 39.8 330 127-469 105-481 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.5E-51 7.6E-56 436.9 42.5 352 156-525 121-474 (697)
7 PRK11788 tetratricopeptide rep 99.9 5.2E-21 1.1E-25 191.8 35.5 307 201-515 39-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 5.6E-20 1.2E-24 204.6 44.4 353 158-528 533-886 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.5E-19 3.3E-24 201.1 46.1 335 160-510 467-801 (899)
10 PRK11788 tetratricopeptide rep 99.9 2.7E-20 5.8E-25 186.6 35.2 299 169-479 46-354 (389)
11 PRK15174 Vi polysaccharide exp 99.8 6.9E-17 1.5E-21 170.3 45.0 329 166-510 50-383 (656)
12 PRK15174 Vi polysaccharide exp 99.8 4.7E-15 1E-19 156.5 40.5 295 164-472 82-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 2.8E-14 6.1E-19 151.0 45.1 295 166-471 135-495 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 3.8E-14 8.3E-19 149.9 42.8 338 160-510 162-573 (615)
15 KOG4626 O-linked N-acetylgluco 99.7 1.1E-14 2.3E-19 140.9 33.5 347 158-523 116-500 (966)
16 KOG4422 Uncharacterized conser 99.7 1.2E-14 2.7E-19 134.7 30.2 307 196-509 206-552 (625)
17 PRK11447 cellulose synthase su 99.7 1.5E-13 3.2E-18 155.1 42.9 329 166-511 359-744 (1157)
18 PRK10049 pgaA outer membrane p 99.7 4.7E-13 1E-17 144.4 44.9 331 164-508 55-456 (765)
19 PRK11447 cellulose synthase su 99.7 2.2E-13 4.7E-18 153.8 42.7 225 166-401 277-523 (1157)
20 KOG4422 Uncharacterized conser 99.7 4.8E-13 1E-17 124.3 35.2 343 157-511 206-593 (625)
21 PRK10049 pgaA outer membrane p 99.7 1.9E-12 4.1E-17 139.8 45.6 338 165-518 22-430 (765)
22 KOG4626 O-linked N-acetylgluco 99.6 3E-13 6.5E-18 131.1 27.5 317 196-528 115-437 (966)
23 PRK14574 hmsH outer membrane p 99.6 4.2E-11 9.2E-16 127.3 44.2 339 162-515 72-484 (822)
24 PRK14574 hmsH outer membrane p 99.6 1.8E-10 3.9E-15 122.5 41.6 332 165-509 109-514 (822)
25 PRK10747 putative protoheme IX 99.5 6.9E-11 1.5E-15 117.8 35.9 257 208-505 129-387 (398)
26 COG2956 Predicted N-acetylgluc 99.5 8.3E-11 1.8E-15 106.0 31.3 292 209-508 47-347 (389)
27 PRK10747 putative protoheme IX 99.5 5.6E-11 1.2E-15 118.4 33.8 268 210-527 97-375 (398)
28 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.4E-15 116.9 35.1 130 372-505 262-396 (409)
29 PRK09782 bacteriophage N4 rece 99.5 1.2E-09 2.7E-14 118.7 44.1 322 172-510 356-708 (987)
30 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.3E-15 117.1 32.7 300 160-470 84-397 (409)
31 PRK09782 bacteriophage N4 rece 99.5 4.4E-10 9.6E-15 122.1 39.6 326 167-507 385-739 (987)
32 KOG2076 RNA polymerase III tra 99.5 8.3E-10 1.8E-14 112.4 38.5 326 170-506 151-510 (895)
33 PF13429 TPR_15: Tetratricopep 99.5 1.6E-13 3.4E-18 130.6 10.7 260 202-469 13-274 (280)
34 PF13429 TPR_15: Tetratricopep 99.4 6E-13 1.3E-17 126.6 11.7 259 165-436 15-276 (280)
35 KOG2002 TPR-containing nuclear 99.4 5.9E-10 1.3E-14 114.2 33.5 360 163-531 312-768 (1018)
36 COG2956 Predicted N-acetylgluc 99.4 1.7E-09 3.7E-14 97.7 31.7 285 172-471 49-346 (389)
37 KOG1155 Anaphase-promoting com 99.4 9.9E-10 2.1E-14 103.8 30.8 305 210-526 240-553 (559)
38 KOG2003 TPR repeat-containing 99.4 7.6E-10 1.6E-14 104.0 29.3 198 317-521 504-702 (840)
39 COG3071 HemY Uncharacterized e 99.4 2.9E-09 6.4E-14 99.1 33.0 287 210-508 97-390 (400)
40 KOG1126 DNA-binding cell divis 99.4 2E-10 4.3E-15 113.3 25.5 287 212-514 334-626 (638)
41 COG3071 HemY Uncharacterized e 99.4 1.2E-08 2.6E-13 95.2 35.2 291 171-477 97-395 (400)
42 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.6E-17 88.0 6.5 50 195-244 1-50 (50)
43 KOG0495 HAT repeat protein [RN 99.3 3.6E-08 7.9E-13 97.1 37.6 335 164-513 412-753 (913)
44 PF13041 PPR_2: PPR repeat fam 99.3 2.6E-12 5.6E-17 86.4 6.5 49 371-419 1-49 (50)
45 KOG2076 RNA polymerase III tra 99.3 2.3E-08 5.1E-13 102.1 37.0 339 159-507 174-554 (895)
46 KOG1126 DNA-binding cell divis 99.3 9.3E-10 2E-14 108.7 25.2 127 338-471 421-551 (638)
47 KOG0495 HAT repeat protein [RN 99.3 3.7E-08 8.1E-13 97.0 35.2 318 171-509 563-881 (913)
48 KOG2002 TPR-containing nuclear 99.3 1.5E-08 3.3E-13 104.1 33.5 334 172-511 427-801 (1018)
49 KOG4318 Bicoid mRNA stability 99.3 2.2E-10 4.9E-15 115.9 19.2 270 179-489 11-282 (1088)
50 PRK12370 invasion protein regu 99.3 2.7E-09 5.9E-14 111.1 27.7 264 196-472 255-535 (553)
51 KOG1155 Anaphase-promoting com 99.3 7.1E-08 1.5E-12 91.5 32.7 259 239-507 234-494 (559)
52 TIGR02521 type_IV_pilW type IV 99.2 5.6E-09 1.2E-13 96.2 25.2 202 196-436 30-231 (234)
53 KOG4318 Bicoid mRNA stability 99.2 5.8E-10 1.3E-14 113.0 18.4 263 156-458 23-286 (1088)
54 KOG2003 TPR repeat-containing 99.2 1.2E-08 2.6E-13 96.0 25.3 289 207-506 429-720 (840)
55 TIGR02521 type_IV_pilW type IV 99.2 9.6E-09 2.1E-13 94.6 25.1 194 161-364 34-229 (234)
56 PRK12370 invasion protein regu 99.2 2.8E-08 6E-13 103.7 29.8 268 230-510 254-537 (553)
57 PF12569 NARP1: NMDA receptor- 99.2 2.2E-07 4.8E-12 93.9 34.6 287 167-470 13-332 (517)
58 KOG1129 TPR repeat-containing 99.2 6.1E-09 1.3E-13 94.2 20.1 237 229-472 220-458 (478)
59 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.9E-12 95.5 32.0 291 205-507 12-333 (517)
60 KOG1915 Cell cycle control pro 99.2 1.2E-06 2.5E-11 83.6 35.4 330 165-508 114-536 (677)
61 KOG1840 Kinesin light chain [C 99.1 1.4E-08 3E-13 101.3 22.6 243 198-470 200-477 (508)
62 KOG0547 Translocase of outer m 99.1 8E-07 1.7E-11 85.1 30.7 223 277-507 336-565 (606)
63 KOG1129 TPR repeat-containing 99.0 2.5E-08 5.3E-13 90.4 17.9 235 268-510 224-460 (478)
64 KOG1173 Anaphase-promoting com 99.0 1E-06 2.3E-11 85.9 29.7 284 196-489 243-533 (611)
65 KOG1915 Cell cycle control pro 99.0 7.4E-06 1.6E-10 78.3 34.4 324 170-508 85-500 (677)
66 KOG1840 Kinesin light chain [C 99.0 2.9E-07 6.4E-12 92.0 26.1 167 339-506 284-477 (508)
67 KOG1174 Anaphase-promoting com 99.0 4.1E-06 8.9E-11 78.7 29.9 310 208-533 207-521 (564)
68 cd05804 StaR_like StaR_like; a 99.0 6.1E-06 1.3E-10 81.6 33.8 308 197-508 6-336 (355)
69 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.7E-12 89.2 19.7 252 205-472 9-265 (290)
70 KOG0547 Translocase of outer m 98.9 6.7E-06 1.5E-10 79.0 29.0 339 161-513 118-537 (606)
71 PRK11189 lipoprotein NlpI; Pro 98.9 2.9E-06 6.3E-11 81.1 27.3 220 173-403 41-266 (296)
72 PRK11189 lipoprotein NlpI; Pro 98.9 1.1E-06 2.4E-11 83.9 23.9 196 166-376 72-273 (296)
73 cd05804 StaR_like StaR_like; a 98.9 2.2E-05 4.8E-10 77.5 33.9 292 170-471 18-335 (355)
74 KOG2376 Signal recognition par 98.8 8.1E-05 1.7E-09 73.4 35.1 137 389-528 357-507 (652)
75 KOG1173 Anaphase-promoting com 98.8 5.7E-06 1.2E-10 80.9 26.5 275 166-453 252-532 (611)
76 KOG2047 mRNA splicing factor [ 98.8 0.00015 3.3E-09 72.2 36.4 360 145-514 153-584 (835)
77 KOG1174 Anaphase-promoting com 98.8 1.9E-05 4.1E-10 74.3 27.6 290 167-472 205-500 (564)
78 COG3063 PilF Tfp pilus assembl 98.8 8.6E-06 1.9E-10 70.9 23.5 201 198-437 36-236 (250)
79 KOG1156 N-terminal acetyltrans 98.8 5.8E-05 1.3E-09 75.2 32.1 190 168-367 51-248 (700)
80 COG3063 PilF Tfp pilus assembl 98.8 7.9E-06 1.7E-10 71.1 22.8 193 164-366 41-235 (250)
81 PF12854 PPR_1: PPR repeat 98.7 1.6E-08 3.4E-13 61.0 3.9 32 368-399 2-33 (34)
82 PF12854 PPR_1: PPR repeat 98.7 1.9E-08 4.1E-13 60.7 4.1 29 440-468 4-32 (34)
83 KOG3785 Uncharacterized conser 98.7 3.2E-05 7E-10 71.3 26.5 330 167-513 66-495 (557)
84 KOG4340 Uncharacterized conser 98.7 1.6E-05 3.4E-10 71.7 22.5 195 159-368 11-208 (459)
85 KOG2047 mRNA splicing factor [ 98.7 0.00048 1E-08 68.8 34.6 264 246-517 361-658 (835)
86 KOG1156 N-terminal acetyltrans 98.6 0.00044 9.5E-09 69.2 34.0 325 170-509 19-435 (700)
87 PRK04841 transcriptional regul 98.6 0.00029 6.4E-09 78.9 36.3 307 201-509 413-761 (903)
88 PF04733 Coatomer_E: Coatomer 98.6 4.9E-06 1.1E-10 78.5 17.7 251 240-508 9-265 (290)
89 KOG0624 dsRNA-activated protei 98.5 0.00076 1.7E-08 62.3 31.2 333 168-529 48-421 (504)
90 KOG3617 WD40 and TPR repeat-co 98.4 0.0004 8.6E-09 71.1 28.2 208 168-399 738-993 (1416)
91 KOG4162 Predicted calmodulin-b 98.4 0.003 6.6E-08 64.7 37.0 359 158-527 323-768 (799)
92 KOG1070 rRNA processing protei 98.4 0.00018 3.8E-09 77.7 26.6 206 196-406 1457-1667(1710)
93 KOG1128 Uncharacterized conser 98.4 3.7E-05 7.9E-10 77.6 20.4 220 265-507 396-615 (777)
94 PLN02789 farnesyltranstransfer 98.4 0.00054 1.2E-08 65.7 26.6 166 319-489 88-266 (320)
95 KOG1070 rRNA processing protei 98.4 0.00036 7.8E-09 75.4 27.3 225 265-497 1456-1689(1710)
96 TIGR03302 OM_YfiO outer membra 98.4 0.00014 3.1E-09 67.1 22.1 101 195-296 31-144 (235)
97 KOG2053 Mitochondrial inherita 98.4 0.0054 1.2E-07 63.9 36.0 194 167-369 52-257 (932)
98 PLN02789 farnesyltranstransfer 98.4 0.00083 1.8E-08 64.4 27.4 207 169-385 48-267 (320)
99 PRK04841 transcriptional regul 98.3 0.0028 6E-08 71.2 35.7 301 206-508 383-720 (903)
100 KOG2376 Signal recognition par 98.3 0.0028 6E-08 63.0 30.3 321 170-505 91-517 (652)
101 KOG4340 Uncharacterized conser 98.3 0.00013 2.7E-09 66.0 19.1 313 200-526 13-358 (459)
102 KOG1125 TPR repeat-containing 98.3 0.00013 2.8E-09 72.0 20.6 221 242-470 295-525 (579)
103 KOG3081 Vesicle coat complex C 98.3 0.0012 2.6E-08 59.1 24.6 86 383-472 147-236 (299)
104 KOG3785 Uncharacterized conser 98.3 0.0031 6.8E-08 58.6 29.5 245 272-528 290-551 (557)
105 KOG3081 Vesicle coat complex C 98.3 0.00042 9.1E-09 61.9 21.5 250 205-472 16-271 (299)
106 KOG0985 Vesicle coat protein c 98.3 0.0059 1.3E-07 64.3 32.1 290 164-505 1054-1367(1666)
107 KOG1914 mRNA cleavage and poly 98.2 0.0064 1.4E-07 59.9 32.1 131 375-508 368-501 (656)
108 TIGR03302 OM_YfiO outer membra 98.2 0.00021 4.6E-09 65.9 19.9 60 448-508 171-232 (235)
109 KOG1128 Uncharacterized conser 98.2 6.9E-05 1.5E-09 75.7 17.1 236 196-453 397-633 (777)
110 KOG0985 Vesicle coat protein c 98.2 0.0021 4.6E-08 67.5 28.0 244 196-472 1103-1370(1666)
111 PRK10370 formate-dependent nit 98.2 0.00041 8.8E-09 61.8 20.5 119 386-508 52-173 (198)
112 KOG0548 Molecular co-chaperone 98.2 0.0077 1.7E-07 59.3 30.4 186 317-509 238-456 (539)
113 PRK10370 formate-dependent nit 98.2 0.0001 2.2E-09 65.6 16.4 119 172-297 53-174 (198)
114 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.2E-11 52.2 4.2 33 199-231 2-34 (35)
115 PRK15359 type III secretion sy 98.2 0.00016 3.4E-09 60.8 16.3 119 177-307 12-130 (144)
116 KOG3617 WD40 and TPR repeat-co 98.2 0.00035 7.7E-09 71.5 20.9 256 196-497 725-1010(1416)
117 PRK15179 Vi polysaccharide bio 98.2 0.0002 4.4E-09 75.5 20.4 160 158-332 86-245 (694)
118 KOG1125 TPR repeat-containing 98.2 0.0007 1.5E-08 66.9 22.0 249 207-463 295-562 (579)
119 KOG3616 Selective LIM binding 98.2 0.0012 2.6E-08 66.9 23.9 18 203-220 621-638 (1636)
120 TIGR00756 PPR pentatricopeptid 98.1 4.4E-06 9.5E-11 51.0 4.5 33 445-477 2-34 (35)
121 PF13812 PPR_3: Pentatricopept 98.1 3.4E-06 7.3E-11 51.2 3.8 33 198-230 2-34 (34)
122 COG5010 TadD Flp pilus assembl 98.1 0.00032 7E-09 62.6 17.5 147 172-327 80-226 (257)
123 KOG4162 Predicted calmodulin-b 98.1 0.0031 6.6E-08 64.6 26.1 130 375-508 652-783 (799)
124 PRK14720 transcript cleavage f 98.1 0.0017 3.7E-08 69.6 25.6 150 268-454 117-268 (906)
125 KOG0624 dsRNA-activated protei 98.1 0.0087 1.9E-07 55.6 30.3 309 200-522 41-384 (504)
126 PF13812 PPR_3: Pentatricopept 98.1 8.2E-06 1.8E-10 49.4 4.5 32 445-476 3-34 (34)
127 TIGR02552 LcrH_SycD type III s 98.0 0.00023 4.9E-09 59.3 14.6 105 196-304 16-120 (135)
128 PRK15359 type III secretion sy 98.0 0.00073 1.6E-08 56.8 17.5 101 378-482 29-129 (144)
129 KOG3060 Uncharacterized conser 98.0 0.0032 6.9E-08 56.0 21.4 188 210-402 25-220 (289)
130 KOG3616 Selective LIM binding 98.0 0.0019 4.1E-08 65.5 22.2 110 274-397 739-848 (1636)
131 PRK14720 transcript cleavage f 98.0 0.0017 3.8E-08 69.5 23.3 233 230-489 29-268 (906)
132 COG5010 TadD Flp pilus assembl 98.0 0.002 4.3E-08 57.7 19.4 160 342-506 70-229 (257)
133 PRK15179 Vi polysaccharide bio 97.9 0.0014 2.9E-08 69.5 21.3 131 196-331 85-216 (694)
134 TIGR02552 LcrH_SycD type III s 97.9 0.00053 1.2E-08 57.0 15.0 97 374-472 18-114 (135)
135 KOG3060 Uncharacterized conser 97.9 0.0069 1.5E-07 54.0 21.5 186 246-437 26-220 (289)
136 PF10037 MRP-S27: Mitochondria 97.9 0.00018 3.8E-09 70.7 13.0 118 370-487 63-182 (429)
137 PF08579 RPM2: Mitochondrial r 97.9 0.00019 4.1E-09 55.3 10.1 81 199-279 27-116 (120)
138 KOG1127 TPR repeat-containing 97.9 0.0027 5.9E-08 66.8 21.5 165 159-331 493-658 (1238)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0015 3.2E-08 64.0 18.8 123 341-470 172-295 (395)
140 PF10037 MRP-S27: Mitochondria 97.9 0.0002 4.4E-09 70.3 12.7 124 333-456 61-186 (429)
141 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3E-10 47.2 3.0 30 199-228 2-31 (31)
142 PF08579 RPM2: Mitochondrial r 97.9 0.0003 6.6E-09 54.2 10.9 74 379-452 31-113 (120)
143 COG4783 Putative Zn-dependent 97.8 0.0014 3.1E-08 63.7 17.4 123 204-331 313-436 (484)
144 KOG2053 Mitochondrial inherita 97.8 0.058 1.3E-06 56.6 29.7 224 169-404 20-257 (932)
145 PF01535 PPR: PPR repeat; Int 97.8 2E-05 4.4E-10 46.4 3.2 27 446-472 3-29 (31)
146 COG4783 Putative Zn-dependent 97.8 0.0073 1.6E-07 58.9 21.8 134 317-472 320-454 (484)
147 PF09976 TPR_21: Tetratricopep 97.8 0.0013 2.8E-08 55.4 15.3 123 343-468 17-143 (145)
148 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0007 1.5E-08 66.3 15.2 118 165-292 176-293 (395)
149 KOG1914 mRNA cleavage and poly 97.8 0.036 7.7E-07 54.9 26.2 131 196-331 19-165 (656)
150 PF09976 TPR_21: Tetratricopep 97.7 0.0017 3.7E-08 54.7 15.0 127 161-292 15-143 (145)
151 PF06239 ECSIT: Evolutionarily 97.7 0.00082 1.8E-08 58.6 12.2 87 196-282 46-153 (228)
152 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.9E-08 57.3 12.6 103 370-491 44-151 (228)
153 PF04840 Vps16_C: Vps16, C-ter 97.5 0.097 2.1E-06 50.2 25.1 110 375-505 179-288 (319)
154 PF04840 Vps16_C: Vps16, C-ter 97.5 0.1 2.2E-06 50.0 27.7 124 338-487 177-300 (319)
155 cd00189 TPR Tetratricopeptide 97.5 0.0018 4E-08 49.2 10.9 94 200-295 3-96 (100)
156 cd00189 TPR Tetratricopeptide 97.5 0.0018 3.9E-08 49.2 10.8 94 162-261 4-97 (100)
157 KOG0548 Molecular co-chaperone 97.5 0.14 3.1E-06 50.8 29.3 331 165-508 9-421 (539)
158 PF14938 SNAP: Soluble NSF att 97.4 0.059 1.3E-06 51.1 22.2 24 200-223 38-61 (282)
159 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0074 1.6E-07 48.6 13.3 95 378-472 7-105 (119)
160 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.01 2.2E-07 47.8 13.8 99 410-509 4-106 (119)
161 KOG1127 TPR repeat-containing 97.3 0.35 7.5E-06 51.8 26.6 224 239-470 466-698 (1238)
162 PLN03088 SGT1, suppressor of 97.3 0.0087 1.9E-07 58.7 14.8 87 169-261 13-99 (356)
163 PF05843 Suf: Suppressor of fo 97.2 0.0067 1.4E-07 57.4 13.5 128 161-296 4-136 (280)
164 PRK02603 photosystem I assembl 97.2 0.023 5.1E-07 49.4 16.0 93 196-289 34-128 (172)
165 PF12895 Apc3: Anaphase-promot 97.2 0.00069 1.5E-08 51.0 5.5 47 422-468 3-50 (84)
166 PF05843 Suf: Suppressor of fo 97.2 0.008 1.7E-07 56.8 13.9 128 341-471 4-135 (280)
167 PLN03088 SGT1, suppressor of 97.2 0.0068 1.5E-07 59.5 13.7 105 204-312 9-113 (356)
168 PRK10866 outer membrane biogen 97.2 0.19 4.2E-06 46.3 23.5 57 379-435 181-239 (243)
169 PF12895 Apc3: Anaphase-promot 97.2 0.00079 1.7E-08 50.7 5.1 81 386-468 2-83 (84)
170 PRK15363 pathogenicity island 97.1 0.011 2.3E-07 49.4 11.5 84 170-259 47-130 (157)
171 PRK10866 outer membrane biogen 97.1 0.15 3.2E-06 47.0 20.0 56 414-469 181-238 (243)
172 PF14938 SNAP: Soluble NSF att 97.0 0.091 2E-06 49.8 19.0 28 161-188 38-65 (282)
173 PRK02603 photosystem I assembl 97.0 0.032 7E-07 48.5 14.8 85 341-426 38-124 (172)
174 PRK15363 pathogenicity island 97.0 0.022 4.8E-07 47.5 12.7 99 196-296 34-132 (157)
175 PF14559 TPR_19: Tetratricopep 97.0 0.0034 7.4E-08 44.8 7.0 62 170-238 3-64 (68)
176 CHL00033 ycf3 photosystem I as 96.9 0.018 3.9E-07 49.8 12.3 92 374-466 36-136 (168)
177 KOG0553 TPR repeat-containing 96.9 0.03 6.5E-07 51.4 13.7 101 206-310 90-190 (304)
178 KOG0550 Molecular chaperone (D 96.9 0.21 4.5E-06 48.0 19.5 267 170-471 61-349 (486)
179 PRK10153 DNA-binding transcrip 96.9 0.044 9.5E-07 56.4 16.5 133 196-332 336-482 (517)
180 KOG2041 WD40 repeat protein [G 96.8 0.35 7.6E-06 49.6 21.4 235 195-470 690-950 (1189)
181 PRK10153 DNA-binding transcrip 96.8 0.14 3E-06 52.8 19.1 135 334-472 333-482 (517)
182 PF14559 TPR_19: Tetratricopep 96.8 0.006 1.3E-07 43.5 6.8 63 420-485 3-65 (68)
183 COG3898 Uncharacterized membra 96.8 0.56 1.2E-05 44.9 30.1 295 159-472 83-392 (531)
184 PF13432 TPR_16: Tetratricopep 96.7 0.0047 1E-07 43.7 5.9 54 167-225 6-59 (65)
185 CHL00033 ycf3 photosystem I as 96.7 0.037 8.1E-07 47.9 12.5 92 340-432 37-137 (168)
186 KOG1538 Uncharacterized conser 96.6 0.37 7.9E-06 49.0 19.3 35 255-292 623-657 (1081)
187 KOG2796 Uncharacterized conser 96.6 0.18 3.9E-06 45.5 15.5 142 341-485 180-326 (366)
188 KOG2796 Uncharacterized conser 96.5 0.58 1.3E-05 42.3 19.2 62 199-260 179-240 (366)
189 PF12688 TPR_5: Tetratrico pep 96.5 0.079 1.7E-06 42.6 12.0 87 382-470 10-102 (120)
190 KOG1130 Predicted G-alpha GTPa 96.5 0.064 1.4E-06 51.3 13.0 133 375-508 197-344 (639)
191 PF13414 TPR_11: TPR repeat; P 96.5 0.013 2.9E-07 41.8 7.0 64 196-260 2-66 (69)
192 KOG1538 Uncharacterized conser 96.5 0.35 7.5E-06 49.2 18.5 80 199-290 600-681 (1081)
193 KOG3941 Intermediate in Toll s 96.5 0.023 5E-07 51.5 9.5 88 195-282 65-173 (406)
194 KOG0553 TPR repeat-containing 96.5 0.042 9.2E-07 50.5 11.3 152 346-507 89-244 (304)
195 PF12688 TPR_5: Tetratrico pep 96.4 0.22 4.8E-06 40.0 14.1 90 203-294 7-102 (120)
196 PF13432 TPR_16: Tetratricopep 96.4 0.014 3.1E-07 41.1 6.5 55 205-260 5-59 (65)
197 PRK10803 tol-pal system protei 96.4 0.078 1.7E-06 49.3 12.7 96 375-472 145-246 (263)
198 PF13525 YfiO: Outer membrane 96.3 0.47 1E-05 42.4 17.4 63 199-261 7-71 (203)
199 PF03704 BTAD: Bacterial trans 96.3 0.027 5.8E-07 47.5 8.6 71 198-269 63-138 (146)
200 COG4235 Cytochrome c biogenesi 96.2 0.33 7.2E-06 45.0 15.7 111 196-310 155-268 (287)
201 PF12921 ATP13: Mitochondrial 96.2 0.093 2E-06 42.6 11.0 97 372-488 1-98 (126)
202 PF03704 BTAD: Bacterial trans 96.2 0.032 6.9E-07 47.0 8.8 57 412-469 66-122 (146)
203 PF13414 TPR_11: TPR repeat; P 96.2 0.027 5.8E-07 40.2 7.1 60 410-470 5-65 (69)
204 PRK10803 tol-pal system protei 96.2 0.11 2.4E-06 48.3 12.7 97 199-297 145-247 (263)
205 PF12921 ATP13: Mitochondrial 96.1 0.1 2.2E-06 42.4 10.5 99 337-455 1-100 (126)
206 PF13525 YfiO: Outer membrane 95.9 1.2 2.5E-05 39.9 18.5 22 273-294 48-69 (203)
207 PF13371 TPR_9: Tetratricopept 95.9 0.049 1.1E-06 39.4 7.5 56 167-227 4-59 (73)
208 COG4235 Cytochrome c biogenesi 95.9 1.2 2.6E-05 41.4 17.6 100 407-509 155-257 (287)
209 PF13371 TPR_9: Tetratricopept 95.8 0.075 1.6E-06 38.4 8.0 54 417-471 4-57 (73)
210 COG5107 RNA14 Pre-mRNA 3'-end 95.7 2.3 5E-05 41.7 20.3 132 372-508 396-531 (660)
211 PF10300 DUF3808: Protein of u 95.5 1.1 2.5E-05 45.7 18.1 163 341-506 191-374 (468)
212 KOG3941 Intermediate in Toll s 95.5 0.26 5.7E-06 44.9 11.6 114 370-502 64-182 (406)
213 KOG1130 Predicted G-alpha GTPa 95.5 1.4 3E-05 42.6 16.7 283 167-470 26-342 (639)
214 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.43 9.4E-06 47.1 13.7 64 372-437 74-141 (453)
215 PF13170 DUF4003: Protein of u 95.4 2.5 5.4E-05 40.1 21.1 129 213-343 78-222 (297)
216 KOG2280 Vacuolar assembly/sort 95.3 3.1 6.7E-05 43.5 19.7 291 147-470 454-771 (829)
217 PF13424 TPR_12: Tetratricopep 95.2 0.077 1.7E-06 38.9 6.5 61 410-470 7-73 (78)
218 PF13424 TPR_12: Tetratricopep 95.2 0.083 1.8E-06 38.7 6.4 65 160-224 7-73 (78)
219 PF09205 DUF1955: Domain of un 94.9 1.6 3.5E-05 35.2 14.1 65 410-475 88-152 (161)
220 PF13170 DUF4003: Protein of u 94.9 0.86 1.9E-05 43.2 13.8 130 248-377 78-221 (297)
221 PF10300 DUF3808: Protein of u 94.8 2.4 5.1E-05 43.4 17.7 44 247-292 248-292 (468)
222 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.5 1.1E-05 46.7 12.1 63 338-402 75-141 (453)
223 KOG2610 Uncharacterized conser 94.7 0.96 2.1E-05 42.5 12.9 188 316-508 116-315 (491)
224 COG4700 Uncharacterized protei 94.7 2.5 5.5E-05 36.3 18.0 103 195-297 87-190 (251)
225 smart00299 CLH Clathrin heavy 94.6 2.2 4.8E-05 35.3 14.6 124 341-487 10-134 (140)
226 smart00299 CLH Clathrin heavy 94.6 2.2 4.9E-05 35.3 14.7 123 164-313 13-136 (140)
227 PRK15331 chaperone protein Sic 94.6 0.27 5.8E-06 41.5 8.4 85 170-260 49-133 (165)
228 COG3898 Uncharacterized membra 94.5 4.8 0.0001 38.9 28.9 297 199-512 84-396 (531)
229 COG4700 Uncharacterized protei 94.5 2.9 6.3E-05 36.0 18.4 102 369-472 85-189 (251)
230 PRK15331 chaperone protein Sic 94.4 0.46 1E-05 40.1 9.4 88 276-366 46-133 (165)
231 KOG1585 Protein required for f 94.3 3.5 7.7E-05 37.1 15.1 87 197-293 31-117 (308)
232 COG1729 Uncharacterized protei 94.1 1.2 2.5E-05 40.9 12.1 89 171-261 154-244 (262)
233 PF13281 DUF4071: Domain of un 94.0 6.4 0.00014 38.4 22.7 164 343-509 146-335 (374)
234 KOG1920 IkappaB kinase complex 94.0 12 0.00027 41.5 25.0 116 370-506 932-1053(1265)
235 KOG0543 FKBP-type peptidyl-pro 94.0 0.97 2.1E-05 43.7 11.9 141 344-508 214-355 (397)
236 KOG0543 FKBP-type peptidyl-pro 94.0 1.6 3.4E-05 42.3 13.2 96 165-261 215-320 (397)
237 PF04053 Coatomer_WDAD: Coatom 93.9 2.9 6.3E-05 42.2 15.8 130 233-396 296-425 (443)
238 KOG2280 Vacuolar assembly/sort 93.9 10 0.00022 40.0 21.8 93 403-506 679-771 (829)
239 COG3629 DnrI DNA-binding trans 93.6 0.58 1.2E-05 43.5 9.4 77 199-276 155-236 (280)
240 KOG2114 Vacuolar assembly/sort 93.5 2 4.4E-05 45.4 14.0 178 270-470 337-517 (933)
241 PF07035 Mic1: Colon cancer-as 93.5 4.4 9.5E-05 34.6 16.1 133 253-401 15-148 (167)
242 PF10602 RPN7: 26S proteasome 93.4 1.6 3.4E-05 38.0 11.6 119 410-531 38-174 (177)
243 COG1729 Uncharacterized protei 93.4 2.1 4.6E-05 39.3 12.6 97 375-472 144-244 (262)
244 COG3118 Thioredoxin domain-con 93.3 5.1 0.00011 37.3 14.9 123 167-296 143-265 (304)
245 PF09613 HrpB1_HrpK: Bacterial 93.3 3.4 7.3E-05 34.8 12.6 110 167-286 19-128 (160)
246 KOG4555 TPR repeat-containing 93.2 3.7 7.9E-05 33.1 11.9 104 418-523 53-159 (175)
247 KOG1585 Protein required for f 93.0 6.8 0.00015 35.4 14.9 205 270-502 34-250 (308)
248 PF04184 ST7: ST7 protein; In 92.8 11 0.00023 37.9 17.1 51 349-399 270-321 (539)
249 KOG4555 TPR repeat-containing 92.7 4 8.7E-05 32.9 11.5 91 167-262 52-145 (175)
250 COG3629 DnrI DNA-binding trans 92.5 1.8 3.8E-05 40.4 10.9 74 411-485 156-234 (280)
251 KOG2610 Uncharacterized conser 92.4 4.1 8.9E-05 38.4 13.0 116 170-292 115-234 (491)
252 PF04053 Coatomer_WDAD: Coatom 92.2 5.6 0.00012 40.2 15.0 158 167-363 270-427 (443)
253 PF13428 TPR_14: Tetratricopep 92.1 0.42 9.1E-06 30.4 4.7 28 199-226 3-30 (44)
254 PF13512 TPR_18: Tetratricopep 91.8 5.8 0.00013 32.8 12.0 54 385-438 22-77 (142)
255 KOG4570 Uncharacterized conser 91.7 2.3 5E-05 39.7 10.4 99 369-471 60-163 (418)
256 PF04184 ST7: ST7 protein; In 91.7 16 0.00035 36.8 17.7 164 202-380 173-338 (539)
257 KOG2114 Vacuolar assembly/sort 91.6 7.2 0.00016 41.5 15.0 251 233-514 335-594 (933)
258 PRK11906 transcriptional regul 91.6 16 0.00034 36.6 16.7 156 162-328 257-432 (458)
259 KOG1920 IkappaB kinase complex 91.5 14 0.0003 41.1 17.4 89 405-506 932-1026(1265)
260 PF13512 TPR_18: Tetratricopep 91.4 6.2 0.00013 32.6 11.8 73 417-489 19-93 (142)
261 KOG0991 Replication factor C, 91.3 7.4 0.00016 34.9 12.7 137 341-487 133-281 (333)
262 COG0457 NrfG FOG: TPR repeat [ 91.3 9.9 0.00022 33.6 29.3 123 347-471 139-264 (291)
263 PF13281 DUF4071: Domain of un 91.2 16 0.00035 35.8 20.6 81 197-277 141-227 (374)
264 KOG2041 WD40 repeat protein [G 91.0 23 0.00049 37.2 23.2 62 444-506 1022-1084(1189)
265 PRK11906 transcriptional regul 90.7 19 0.00042 36.0 17.3 158 342-506 257-434 (458)
266 COG4785 NlpI Lipoprotein NlpI, 90.7 12 0.00025 33.3 14.8 176 175-366 82-265 (297)
267 PF13176 TPR_7: Tetratricopept 90.7 0.55 1.2E-05 28.3 3.9 26 199-224 1-26 (36)
268 PF13428 TPR_14: Tetratricopep 90.3 1.1 2.3E-05 28.5 5.2 41 160-205 3-43 (44)
269 COG4105 ComL DNA uptake lipopr 90.2 15 0.00032 33.7 20.8 53 417-470 176-231 (254)
270 PF09205 DUF1955: Domain of un 90.1 8.9 0.00019 31.1 16.2 139 278-439 13-151 (161)
271 PF13431 TPR_17: Tetratricopep 90.0 0.52 1.1E-05 28.1 3.3 32 182-218 3-34 (34)
272 COG4649 Uncharacterized protei 90.0 11 0.00024 32.1 13.7 136 230-366 57-195 (221)
273 PF13929 mRNA_stabil: mRNA sta 89.7 18 0.00038 33.9 17.1 55 336-390 200-255 (292)
274 PF08631 SPO22: Meiosis protei 89.6 19 0.0004 34.0 24.7 160 341-505 87-272 (278)
275 COG1747 Uncharacterized N-term 89.6 25 0.00054 35.5 19.8 180 195-383 64-249 (711)
276 PF13176 TPR_7: Tetratricopept 89.5 0.83 1.8E-05 27.5 4.0 26 445-470 1-26 (36)
277 PF10345 Cohesin_load: Cohesin 89.5 33 0.00071 36.7 34.8 322 196-527 29-460 (608)
278 KOG4570 Uncharacterized conser 89.3 4.8 0.0001 37.6 10.3 103 334-438 60-165 (418)
279 COG0457 NrfG FOG: TPR repeat [ 89.2 15 0.00032 32.4 29.5 190 317-510 73-267 (291)
280 COG5107 RNA14 Pre-mRNA 3'-end 89.2 25 0.00054 34.9 24.3 130 303-437 398-531 (660)
281 PF13929 mRNA_stabil: mRNA sta 89.1 19 0.00042 33.6 16.7 89 368-456 197-291 (292)
282 TIGR02561 HrpB1_HrpK type III 89.0 12 0.00025 31.2 11.4 53 170-227 22-74 (153)
283 KOG1550 Extracellular protein 88.3 37 0.00079 35.7 24.4 112 175-297 229-358 (552)
284 KOG1550 Extracellular protein 88.1 38 0.00081 35.7 18.9 84 353-438 308-394 (552)
285 COG3118 Thioredoxin domain-con 88.0 23 0.0005 33.1 17.2 120 348-470 144-263 (304)
286 PF08631 SPO22: Meiosis protei 88.0 24 0.00052 33.3 25.9 17 453-469 256-272 (278)
287 PF10602 RPN7: 26S proteasome 87.6 7.3 0.00016 33.8 10.2 64 198-261 37-102 (177)
288 KOG0550 Molecular chaperone (D 87.0 33 0.00071 33.7 20.6 176 230-437 166-350 (486)
289 PF09613 HrpB1_HrpK: Bacterial 86.5 19 0.00041 30.5 12.2 19 384-402 55-73 (160)
290 PF07079 DUF1347: Protein of u 86.3 38 0.00082 33.8 34.8 80 424-506 437-522 (549)
291 COG4105 ComL DNA uptake lipopr 86.0 28 0.0006 31.9 23.3 58 379-437 173-233 (254)
292 PF04097 Nic96: Nup93/Nic96; 86.0 37 0.0008 36.2 16.3 220 199-438 114-357 (613)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 85.8 5.7 0.00012 30.1 7.1 45 215-259 25-69 (103)
294 PF02284 COX5A: Cytochrome c o 84.4 4.9 0.00011 30.8 6.3 47 215-261 28-74 (108)
295 PF07079 DUF1347: Protein of u 84.4 47 0.001 33.2 31.6 126 350-483 391-530 (549)
296 COG5159 RPN6 26S proteasome re 84.2 36 0.00077 31.7 15.1 94 377-470 129-233 (421)
297 PF00515 TPR_1: Tetratricopept 84.0 2.8 6.2E-05 24.5 4.2 29 198-226 2-30 (34)
298 KOG0687 26S proteasome regulat 83.7 41 0.00088 32.0 13.9 119 409-530 105-238 (393)
299 PF07035 Mic1: Colon cancer-as 83.1 28 0.00062 29.7 15.9 134 218-366 15-148 (167)
300 KOG1464 COP9 signalosome, subu 83.0 39 0.00084 31.2 17.1 98 262-362 21-129 (440)
301 PF13374 TPR_10: Tetratricopep 83.0 3 6.4E-05 25.7 4.3 27 198-224 3-29 (42)
302 PF07575 Nucleopor_Nup85: Nup8 82.8 44 0.00096 35.3 15.2 110 406-519 403-535 (566)
303 COG3947 Response regulator con 82.7 42 0.00091 31.4 16.7 59 376-435 282-340 (361)
304 COG1747 Uncharacterized N-term 82.5 60 0.0013 33.0 23.0 177 302-487 66-248 (711)
305 KOG0276 Vesicle coat complex C 82.5 35 0.00076 35.2 13.1 28 197-224 666-693 (794)
306 PF13431 TPR_17: Tetratricopep 82.1 2 4.2E-05 25.6 2.9 22 442-463 12-33 (34)
307 PF13374 TPR_10: Tetratricopep 81.8 3.9 8.4E-05 25.1 4.5 27 444-470 3-29 (42)
308 COG4649 Uncharacterized protei 81.5 33 0.00072 29.4 16.1 122 349-470 69-194 (221)
309 PF02284 COX5A: Cytochrome c o 81.1 17 0.00037 28.0 8.1 45 426-470 28-72 (108)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 80.5 23 0.0005 27.0 9.0 63 318-381 22-84 (103)
311 PF07719 TPR_2: Tetratricopept 80.1 4.8 0.0001 23.3 4.2 29 198-226 2-30 (34)
312 PHA02875 ankyrin repeat protei 80.0 49 0.0011 33.2 14.1 50 238-291 38-89 (413)
313 PF11207 DUF2989: Protein of u 80.0 29 0.00064 30.5 10.4 75 212-287 121-198 (203)
314 PF02259 FAT: FAT domain; Int 79.9 62 0.0013 31.5 25.0 66 371-436 144-212 (352)
315 PF00637 Clathrin: Region in C 79.6 0.67 1.5E-05 38.7 0.4 84 343-433 12-95 (143)
316 PF00637 Clathrin: Region in C 79.3 0.57 1.2E-05 39.1 -0.1 86 378-470 12-97 (143)
317 PF00515 TPR_1: Tetratricopept 78.9 5.6 0.00012 23.2 4.3 26 445-470 3-28 (34)
318 KOG0276 Vesicle coat complex C 78.8 65 0.0014 33.4 13.6 74 385-473 649-722 (794)
319 COG4455 ImpE Protein of avirul 78.7 14 0.00031 32.8 8.0 127 375-512 3-138 (273)
320 PRK08691 DNA polymerase III su 77.2 67 0.0015 34.5 14.0 115 390-530 181-296 (709)
321 PHA02875 ankyrin repeat protei 77.2 84 0.0018 31.5 15.4 212 241-479 8-231 (413)
322 TIGR02561 HrpB1_HrpK type III 77.1 42 0.0009 28.0 10.9 48 421-472 23-73 (153)
323 PF07719 TPR_2: Tetratricopept 76.6 7.1 0.00015 22.6 4.3 25 446-470 4-28 (34)
324 PF10345 Cohesin_load: Cohesin 76.0 1.2E+02 0.0025 32.5 30.0 168 196-364 58-251 (608)
325 PF11207 DUF2989: Protein of u 75.7 31 0.00067 30.4 9.3 42 421-462 153-197 (203)
326 TIGR03504 FimV_Cterm FimV C-te 75.1 5.6 0.00012 25.3 3.5 23 449-471 5-27 (44)
327 COG3947 Response regulator con 74.6 19 0.0004 33.6 8.0 71 234-305 281-356 (361)
328 PF13762 MNE1: Mitochondrial s 73.4 52 0.0011 27.4 9.9 79 341-419 42-126 (145)
329 PF02259 FAT: FAT domain; Int 73.2 94 0.002 30.2 20.9 65 337-401 145-212 (352)
330 PF04762 IKI3: IKI3 family; I 73.2 1.7E+02 0.0037 33.1 17.8 51 351-402 791-843 (928)
331 KOG2063 Vacuolar assembly/sort 73.1 1.6E+02 0.0034 32.7 17.9 27 199-225 506-532 (877)
332 PF13762 MNE1: Mitochondrial s 72.7 55 0.0012 27.3 11.1 87 161-247 42-130 (145)
333 PRK14951 DNA polymerase III su 72.0 1.1E+02 0.0025 32.5 14.2 103 400-528 197-299 (618)
334 PF06552 TOM20_plant: Plant sp 72.0 36 0.00079 29.4 8.7 77 174-263 51-138 (186)
335 PRK14958 DNA polymerase III su 71.7 1.2E+02 0.0027 31.4 14.4 103 399-527 191-293 (509)
336 COG5187 RPN7 26S proteasome re 71.3 91 0.002 29.2 12.5 67 373-439 115-186 (412)
337 PRK07003 DNA polymerase III su 71.2 1.2E+02 0.0027 33.0 14.1 119 389-533 180-299 (830)
338 COG2976 Uncharacterized protei 71.0 73 0.0016 28.0 14.5 87 381-472 97-188 (207)
339 PF13181 TPR_8: Tetratricopept 70.5 13 0.00029 21.4 4.4 27 445-471 3-29 (34)
340 TIGR02508 type_III_yscG type I 70.4 47 0.001 25.6 8.9 12 455-466 51-62 (115)
341 PRK09687 putative lyase; Provi 70.3 98 0.0021 29.2 28.5 74 371-453 204-277 (280)
342 PF13181 TPR_8: Tetratricopept 70.1 12 0.00027 21.6 4.2 27 199-225 3-29 (34)
343 COG2909 MalT ATP-dependent tra 69.7 1.8E+02 0.0039 31.9 26.5 195 317-512 429-651 (894)
344 PRK14956 DNA polymerase III su 69.6 1.4E+02 0.003 30.6 13.7 35 442-476 247-281 (484)
345 TIGR02508 type_III_yscG type I 69.6 49 0.0011 25.5 7.8 87 388-482 20-106 (115)
346 KOG1941 Acetylcholine receptor 68.9 1.2E+02 0.0025 29.5 13.3 56 202-257 127-187 (518)
347 COG2976 Uncharacterized protei 68.1 85 0.0018 27.6 10.5 88 205-297 97-189 (207)
348 TIGR03504 FimV_Cterm FimV C-te 68.0 9.7 0.00021 24.2 3.4 25 273-297 5-29 (44)
349 PF13174 TPR_6: Tetratricopept 67.9 8.9 0.00019 21.9 3.2 20 451-470 8-27 (33)
350 PF07721 TPR_4: Tetratricopept 67.6 8.1 0.00017 21.1 2.7 19 448-466 6-24 (26)
351 PF10579 Rapsyn_N: Rapsyn N-te 67.2 19 0.0004 26.3 5.1 46 350-395 18-65 (80)
352 PF10579 Rapsyn_N: Rapsyn N-te 67.1 20 0.00044 26.1 5.3 46 420-465 18-65 (80)
353 PF07163 Pex26: Pex26 protein; 65.0 65 0.0014 30.0 9.3 58 339-396 119-181 (309)
354 PRK14963 DNA polymerase III su 64.7 1.8E+02 0.0039 30.2 13.8 83 390-475 178-273 (504)
355 KOG4077 Cytochrome c oxidase, 64.6 44 0.00096 26.9 7.1 47 215-261 67-113 (149)
356 KOG1464 COP9 signalosome, subu 63.8 1.2E+02 0.0027 28.0 20.6 98 194-291 23-129 (440)
357 PRK07764 DNA polymerase III su 63.0 1.4E+02 0.003 33.2 13.2 29 446-475 251-279 (824)
358 COG4455 ImpE Protein of avirul 62.2 1.2E+02 0.0026 27.3 12.8 77 340-417 3-81 (273)
359 PRK13341 recombination factor 60.7 1.5E+02 0.0033 32.4 12.8 121 388-523 169-302 (725)
360 PRK15180 Vi polysaccharide bio 60.5 56 0.0012 32.8 8.6 137 345-484 296-432 (831)
361 PRK09687 putative lyase; Provi 60.5 1.5E+02 0.0033 27.9 29.1 60 230-293 35-98 (280)
362 KOG2908 26S proteasome regulat 59.9 1.4E+02 0.0029 28.8 10.6 76 378-453 80-166 (380)
363 KOG4507 Uncharacterized conser 59.4 1.4E+02 0.003 31.1 11.2 101 349-451 618-718 (886)
364 PF07163 Pex26: Pex26 protein; 59.2 1.6E+02 0.0034 27.6 13.6 87 380-466 90-181 (309)
365 PF11848 DUF3368: Domain of un 59.1 40 0.00086 21.9 5.2 27 491-517 14-40 (48)
366 KOG4648 Uncharacterized conser 58.9 26 0.00057 33.4 5.9 54 205-260 105-159 (536)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 58.9 64 0.0014 26.2 7.6 42 426-467 81-123 (126)
368 PRK14960 DNA polymerase III su 58.8 2.6E+02 0.0057 30.1 13.8 45 390-436 180-225 (702)
369 PF14689 SPOB_a: Sensor_kinase 58.2 24 0.00051 24.4 4.3 19 450-468 30-48 (62)
370 PRK14952 DNA polymerase III su 57.5 2.6E+02 0.0056 29.7 13.7 44 391-436 181-225 (584)
371 PF11848 DUF3368: Domain of un 57.4 43 0.00094 21.7 5.2 26 246-271 16-41 (48)
372 PLN03025 replication factor C 56.9 1.9E+02 0.0041 27.9 12.5 98 425-526 162-271 (319)
373 KOG2063 Vacuolar assembly/sort 56.3 3.2E+02 0.007 30.4 15.3 39 382-420 600-638 (877)
374 PRK06305 DNA polymerase III su 56.1 2.3E+02 0.005 28.9 12.8 84 390-476 183-280 (451)
375 COG5159 RPN6 26S proteasome re 55.9 1.8E+02 0.0039 27.3 17.6 55 202-256 8-69 (421)
376 PF00244 14-3-3: 14-3-3 protei 54.6 1.5E+02 0.0032 27.2 10.1 40 238-277 7-46 (236)
377 COG5187 RPN7 26S proteasome re 54.4 1.9E+02 0.0042 27.2 13.0 97 267-365 115-219 (412)
378 KOG0403 Neoplastic transformat 53.7 2.5E+02 0.0054 28.3 16.6 61 447-509 513-573 (645)
379 PF10366 Vps39_1: Vacuolar sor 53.6 46 0.00099 26.1 5.7 27 199-225 41-67 (108)
380 KOG4077 Cytochrome c oxidase, 53.2 1.1E+02 0.0025 24.7 7.6 46 251-296 68-113 (149)
381 KOG4234 TPR repeat-containing 53.1 1.6E+02 0.0036 26.0 10.6 95 381-479 103-202 (271)
382 cd00280 TRFH Telomeric Repeat 52.6 1.1E+02 0.0024 26.6 8.0 68 174-244 85-155 (200)
383 PF11846 DUF3366: Domain of un 52.1 74 0.0016 27.9 7.7 32 405-436 141-172 (193)
384 KOG1258 mRNA processing protei 51.8 3E+02 0.0066 28.7 28.0 95 200-295 82-179 (577)
385 KOG0890 Protein kinase of the 51.5 5.8E+02 0.013 31.8 22.7 62 408-472 1670-1731(2382)
386 smart00028 TPR Tetratricopepti 51.4 21 0.00046 19.2 2.9 27 199-225 3-29 (34)
387 PF14853 Fis1_TPR_C: Fis1 C-te 51.0 72 0.0016 21.3 5.9 25 491-517 13-37 (53)
388 KOG3677 RNA polymerase I-assoc 50.8 91 0.002 30.8 8.1 62 233-294 236-299 (525)
389 PF14689 SPOB_a: Sensor_kinase 50.6 41 0.00089 23.2 4.5 25 481-506 26-50 (62)
390 KOG4234 TPR repeat-containing 50.6 1.4E+02 0.0031 26.4 8.5 89 207-297 105-198 (271)
391 PF04910 Tcf25: Transcriptiona 50.0 2.6E+02 0.0057 27.5 15.6 132 374-507 8-167 (360)
392 PF10475 DUF2450: Protein of u 50.0 2.3E+02 0.005 26.9 12.7 26 440-465 194-219 (291)
393 COG2909 MalT ATP-dependent tra 50.0 3.9E+02 0.0085 29.5 30.5 227 278-504 426-684 (894)
394 PF11663 Toxin_YhaV: Toxin wit 49.8 21 0.00045 29.1 3.2 21 352-372 109-129 (140)
395 PRK14965 DNA polymerase III su 48.9 3.5E+02 0.0077 28.7 13.4 36 400-437 192-227 (576)
396 PRK10564 maltose regulon perip 48.7 36 0.00077 32.1 5.1 41 406-446 254-295 (303)
397 PRK14953 DNA polymerase III su 48.6 2.7E+02 0.0058 28.8 11.9 85 390-477 181-279 (486)
398 PRK10564 maltose regulon perip 48.5 34 0.00073 32.2 4.9 42 195-236 254-296 (303)
399 KOG4648 Uncharacterized conser 48.4 1E+02 0.0022 29.7 7.9 80 345-434 104-184 (536)
400 KOG1258 mRNA processing protei 48.1 3.5E+02 0.0075 28.3 31.8 329 164-508 85-470 (577)
401 PF12169 DNA_pol3_gamma3: DNA 48.1 74 0.0016 26.2 6.7 55 477-533 14-68 (143)
402 PF11846 DUF3366: Domain of un 47.6 56 0.0012 28.7 6.2 44 427-472 130-173 (193)
403 PF09477 Type_III_YscG: Bacter 47.5 1.4E+02 0.003 23.5 8.1 79 423-509 21-99 (116)
404 PRK14962 DNA polymerase III su 47.3 3.4E+02 0.0073 28.0 13.4 107 390-522 179-286 (472)
405 PF15297 CKAP2_C: Cytoskeleton 46.9 2.3E+02 0.005 27.5 10.1 64 423-488 118-185 (353)
406 PRK05563 DNA polymerase III su 46.6 3.6E+02 0.0078 28.5 12.7 45 391-437 182-227 (559)
407 PRK05896 DNA polymerase III su 46.5 3.9E+02 0.0084 28.4 12.9 43 483-527 251-293 (605)
408 PRK06645 DNA polymerase III su 46.5 3.6E+02 0.0078 28.0 14.0 45 390-436 190-235 (507)
409 PRK14949 DNA polymerase III su 46.3 4.7E+02 0.01 29.4 13.8 112 390-527 181-293 (944)
410 cd00280 TRFH Telomeric Repeat 46.0 1.9E+02 0.0041 25.2 8.5 21 451-471 119-139 (200)
411 PRK14971 DNA polymerase III su 45.7 4.1E+02 0.0089 28.5 13.1 34 400-435 194-227 (614)
412 KOG4521 Nuclear pore complex, 45.7 5.2E+02 0.011 29.7 14.7 25 477-501 1100-1124(1480)
413 PF08542 Rep_fac_C: Replicatio 45.6 59 0.0013 24.2 5.2 29 446-475 8-36 (89)
414 PF04097 Nic96: Nup93/Nic96; 44.8 4.2E+02 0.0092 28.4 17.6 72 157-233 110-188 (613)
415 PF09454 Vps23_core: Vps23 cor 44.6 41 0.0009 23.5 3.7 29 410-438 10-38 (65)
416 KOG0687 26S proteasome regulat 44.6 3E+02 0.0064 26.5 18.7 94 341-436 107-209 (393)
417 PRK14964 DNA polymerase III su 44.1 3.8E+02 0.0083 27.7 13.8 35 400-436 189-223 (491)
418 PRK14961 DNA polymerase III su 43.7 3.3E+02 0.0072 26.8 13.3 50 477-528 245-294 (363)
419 PF02847 MA3: MA3 domain; Int 43.6 1.1E+02 0.0023 24.0 6.7 61 201-263 6-68 (113)
420 PF11663 Toxin_YhaV: Toxin wit 43.6 24 0.00053 28.7 2.7 30 317-348 109-138 (140)
421 KOG2297 Predicted translation 43.6 3E+02 0.0064 26.2 19.3 75 379-463 261-341 (412)
422 COG0790 FOG: TPR repeat, SEL1 43.5 2.8E+02 0.0062 26.0 21.9 25 494-518 252-276 (292)
423 smart00386 HAT HAT (Half-A-TPR 43.1 57 0.0012 18.1 3.9 28 173-205 2-29 (33)
424 COG5108 RPO41 Mitochondrial DN 42.9 2.1E+02 0.0046 30.3 9.7 92 342-436 32-131 (1117)
425 KOG0890 Protein kinase of the 41.6 8.1E+02 0.018 30.7 25.8 321 167-509 1392-1732(2382)
426 PF11123 DNA_Packaging_2: DNA 41.6 1.1E+02 0.0024 21.9 5.3 37 170-211 9-45 (82)
427 KOG1586 Protein required for f 41.5 2.8E+02 0.0061 25.4 20.6 21 419-439 165-185 (288)
428 COG4785 NlpI Lipoprotein NlpI, 41.5 2.7E+02 0.0058 25.1 17.2 64 267-332 99-162 (297)
429 PRK14950 DNA polymerase III su 41.0 4.3E+02 0.0094 28.1 12.5 82 391-475 183-278 (585)
430 PF06552 TOM20_plant: Plant sp 40.4 2.5E+02 0.0054 24.4 8.7 74 200-277 31-123 (186)
431 PRK09111 DNA polymerase III su 40.3 4.9E+02 0.011 27.8 14.1 45 391-437 195-240 (598)
432 KOG2422 Uncharacterized conser 40.3 4.6E+02 0.0099 27.5 12.0 54 417-470 351-405 (665)
433 KOG2396 HAT (Half-A-TPR) repea 39.2 4.5E+02 0.0097 27.0 23.6 44 424-469 512-556 (568)
434 COG0735 Fur Fe2+/Zn2+ uptake r 38.9 1.9E+02 0.0042 24.1 7.6 57 223-280 12-68 (145)
435 PRK14970 DNA polymerase III su 38.7 3.9E+02 0.0085 26.2 12.1 84 390-476 170-267 (367)
436 PF09477 Type_III_YscG: Bacter 38.7 1.9E+02 0.0042 22.7 8.6 77 389-472 22-98 (116)
437 PF11817 Foie-gras_1: Foie gra 38.1 2.4E+02 0.0052 26.0 9.0 23 448-470 183-205 (247)
438 PRK07452 DNA polymerase III su 38.0 3.7E+02 0.0081 25.8 11.7 36 397-434 141-176 (326)
439 PRK09857 putative transposase; 37.7 2.3E+02 0.0049 27.0 8.8 25 451-475 248-272 (292)
440 PF10366 Vps39_1: Vacuolar sor 37.4 1.6E+02 0.0034 23.1 6.4 26 270-295 42-67 (108)
441 PF07575 Nucleopor_Nup85: Nup8 37.3 85 0.0018 33.2 6.5 61 231-293 404-464 (566)
442 cd08819 CARD_MDA5_2 Caspase ac 36.9 1.8E+02 0.0039 21.8 6.7 36 317-357 50-85 (88)
443 TIGR02397 dnaX_nterm DNA polym 36.7 4.1E+02 0.0088 25.8 13.4 84 390-476 179-276 (355)
444 KOG1498 26S proteasome regulat 36.4 4.4E+02 0.0095 26.1 17.0 90 342-438 135-242 (439)
445 PF02847 MA3: MA3 domain; Int 36.1 1.7E+02 0.0036 22.8 6.7 23 412-434 6-28 (113)
446 COG0735 Fur Fe2+/Zn2+ uptake r 35.9 1.6E+02 0.0034 24.6 6.7 60 397-457 10-69 (145)
447 PF11817 Foie-gras_1: Foie gra 35.6 1.9E+02 0.0041 26.7 7.8 57 413-469 183-244 (247)
448 KOG0686 COP9 signalosome, subu 35.5 4.6E+02 0.01 26.1 14.5 13 494-506 319-331 (466)
449 PRK06647 DNA polymerase III su 35.1 5.7E+02 0.012 27.1 12.6 44 391-436 182-226 (563)
450 smart00777 Mad3_BUB1_I Mad3/BU 34.9 2.5E+02 0.0053 22.8 9.9 42 462-503 82-123 (125)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 34.8 2.5E+02 0.0053 22.7 9.1 43 250-292 81-124 (126)
452 PF09986 DUF2225: Uncharacteri 34.5 3.4E+02 0.0075 24.4 12.6 54 460-513 142-199 (214)
453 KOG2297 Predicted translation 33.7 4.3E+02 0.0093 25.2 18.4 143 318-499 182-341 (412)
454 PF10475 DUF2450: Protein of u 33.6 4.2E+02 0.0091 25.1 10.3 22 371-392 195-216 (291)
455 PF14853 Fis1_TPR_C: Fis1 C-te 33.4 1.5E+02 0.0032 19.8 5.0 37 448-486 6-42 (53)
456 KOG1498 26S proteasome regulat 32.5 5.1E+02 0.011 25.7 16.8 83 313-402 141-241 (439)
457 COG0790 FOG: TPR repeat, SEL1 32.0 4.3E+02 0.0094 24.7 22.0 86 279-370 53-145 (292)
458 PF09454 Vps23_core: Vps23 cor 31.9 1.3E+02 0.0029 21.0 4.7 48 196-244 7-54 (65)
459 PRK11639 zinc uptake transcrip 31.7 2.9E+02 0.0062 23.7 7.8 58 224-282 18-75 (169)
460 PRK09857 putative transposase; 31.5 4.6E+02 0.01 24.9 10.9 67 446-514 209-275 (292)
461 PF09670 Cas_Cas02710: CRISPR- 31.5 5.3E+02 0.012 25.6 12.2 52 349-401 142-197 (379)
462 PF11768 DUF3312: Protein of u 31.3 6E+02 0.013 26.4 10.9 60 341-402 411-473 (545)
463 PF08424 NRDE-2: NRDE-2, neces 31.1 4.9E+02 0.011 25.1 18.9 153 361-516 8-192 (321)
464 PF12926 MOZART2: Mitotic-spin 30.9 2.3E+02 0.005 21.2 8.1 42 253-294 29-70 (88)
465 KOG4507 Uncharacterized conser 30.8 5.2E+02 0.011 27.2 10.2 105 310-416 614-718 (886)
466 PF12862 Apc5: Anaphase-promot 30.7 2.3E+02 0.0051 21.3 6.7 23 273-295 47-69 (94)
467 PHA03100 ankyrin repeat protei 30.6 4.5E+02 0.0097 26.9 10.6 241 203-475 38-308 (480)
468 KOG3677 RNA polymerase I-assoc 30.4 4.6E+02 0.01 26.2 9.3 64 196-260 234-300 (525)
469 COG5108 RPO41 Mitochondrial DN 30.2 3.7E+02 0.0081 28.6 9.2 90 307-400 33-130 (1117)
470 PF09868 DUF2095: Uncharacteri 30.1 1.8E+02 0.004 22.9 5.4 25 203-227 67-91 (128)
471 PRK09462 fur ferric uptake reg 30.0 3.2E+02 0.007 22.7 7.8 34 248-281 33-66 (148)
472 PF00244 14-3-3: 14-3-3 protei 29.7 2.5E+02 0.0053 25.7 7.5 57 414-470 7-64 (236)
473 PRK10941 hypothetical protein; 29.7 4.7E+02 0.01 24.5 10.9 86 197-283 181-267 (269)
474 TIGR01503 MthylAspMut_E methyl 29.6 3.2E+02 0.0069 27.7 8.4 171 352-531 68-274 (480)
475 KOG1941 Acetylcholine receptor 28.9 5.7E+02 0.012 25.1 21.4 119 317-435 136-273 (518)
476 PRK13342 recombination factor 28.4 6.2E+02 0.013 25.4 19.9 29 352-380 244-272 (413)
477 PF02607 B12-binding_2: B12 bi 28.3 2.3E+02 0.0049 20.3 5.9 37 492-528 14-51 (79)
478 PF09986 DUF2225: Uncharacteri 28.2 4.4E+02 0.0096 23.7 9.6 18 206-223 86-103 (214)
479 PRK07003 DNA polymerase III su 28.0 8.3E+02 0.018 27.0 11.7 29 195-225 198-226 (830)
480 COG2812 DnaX DNA polymerase II 28.0 7.1E+02 0.015 25.9 13.1 47 390-438 181-228 (515)
481 smart00804 TAP_C C-terminal do 27.9 45 0.00098 23.2 1.8 23 210-232 38-61 (63)
482 PF03745 DUF309: Domain of unk 27.8 2.1E+02 0.0045 19.8 5.6 14 456-469 12-25 (62)
483 COG2178 Predicted RNA-binding 27.5 4.3E+02 0.0094 23.3 9.0 17 491-507 133-149 (204)
484 PRK11639 zinc uptake transcrip 27.2 2.5E+02 0.0055 24.0 6.7 38 422-459 39-76 (169)
485 cd07153 Fur_like Ferric uptake 26.8 1.9E+02 0.0041 22.7 5.6 30 391-420 18-47 (116)
486 PF11838 ERAP1_C: ERAP1-like C 26.6 5.6E+02 0.012 24.3 18.3 109 354-467 146-261 (324)
487 PRK14959 DNA polymerase III su 26.5 8.2E+02 0.018 26.2 13.0 46 390-437 181-227 (624)
488 PRK14969 DNA polymerase III su 25.8 7.9E+02 0.017 25.8 14.0 46 390-437 181-227 (527)
489 PF12926 MOZART2: Mitotic-spin 25.7 2.9E+02 0.0063 20.7 8.2 63 195-259 8-70 (88)
490 KOG0508 Ankyrin repeat protein 25.6 4E+02 0.0088 27.0 8.2 295 213-535 126-461 (615)
491 PHA02798 ankyrin-like protein; 25.6 5.5E+02 0.012 26.4 10.2 187 252-442 18-213 (489)
492 PRK08691 DNA polymerase III su 25.5 9E+02 0.02 26.4 11.8 69 195-266 198-279 (709)
493 KOG1586 Protein required for f 25.4 5.3E+02 0.012 23.7 20.2 24 311-334 162-185 (288)
494 cd00245 Glm_e Coenzyme B12-dep 25.4 50 0.0011 33.0 2.2 42 471-514 161-202 (428)
495 PHA03100 ankyrin repeat protei 25.3 5.6E+02 0.012 26.2 10.2 248 237-515 37-312 (480)
496 KOG1166 Mitotic checkpoint ser 25.1 3.9E+02 0.0084 30.3 9.0 53 420-472 90-143 (974)
497 PF12862 Apc5: Anaphase-promot 24.9 3E+02 0.0066 20.6 6.9 22 449-470 47-68 (94)
498 COG2178 Predicted RNA-binding 24.9 4.9E+02 0.011 23.0 10.3 29 196-224 28-56 (204)
499 KOG0376 Serine-threonine phosp 24.9 2.5E+02 0.0055 28.4 6.9 120 415-539 11-132 (476)
500 KOG2066 Vacuolar assembly/sort 24.8 9.4E+02 0.02 26.3 23.3 288 165-502 363-670 (846)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-59 Score=499.35 Aligned_cols=367 Identities=23% Similarity=0.300 Sum_probs=353.4
Q ss_pred hhhHhhcc---cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 148 NLVCFFKW---VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 148 ~ll~~~~w---~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.++.+|+. ++..+|+.++.++++.|+.+.|.++|+.|.+.+.. ||..+||+||.+|++.|++++|.++|++|.
T Consensus 424 eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~----pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 424 EAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK----ADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 34455544 56678999999999999999999999999997766 899999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCH
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE--KKMYPPQ 302 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~ 302 (540)
+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 6789999
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA 382 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 382 (540)
.+|+++|.+|++. |++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+
T Consensus 580 vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 580 ITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 383 YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCA 462 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 462 (540)
|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHH
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALI 520 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll 520 (540)
.++|++|.+.|+.||..||+.+|.+|+ +.|++++|.+++++|.+.|+.||..+| .++
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~-k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASE-RKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999988 899999999999999999999999998 444
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.9e-58 Score=491.03 Aligned_cols=367 Identities=23% Similarity=0.356 Sum_probs=343.3
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..++..+++.|..++|..+|+.|.. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus 409 ~~~li~~~~~~g~~~eAl~lf~~M~~--------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 409 HAKFFKACKKQRAVKEAFRFAKLIRN--------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC--------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444555555555555555554432 7999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.++++. |+++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~d 559 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-GAVD 559 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHhHh--ccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 321 LALDMLDDFSG--EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 321 ~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
+|.++|++|.. .++.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999986 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHH-------------HHHhhhhccccc
Q 042609 479 DEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKE-------------LEEDAIENGEAL 537 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~-------------l~~~~~~~~~~~ 537 (540)
.+||.||.+|| +.|++++|.++|++|.+.|+.||..|| .++.++++ |.+.|+.||..+
T Consensus 720 vtyN~LI~gy~-k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 720 STMNALITALC-EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999 899999999999999999999999999 77777754 556777777644
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-55 Score=467.51 Aligned_cols=351 Identities=17% Similarity=0.202 Sum_probs=333.3
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETY 235 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~ 235 (540)
++..+|+.++..+++.|+.++|.++|+.|.+ ||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 3455677888888999999999999998865 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 315 (540)
+.++.+|++.|..+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.. ++..+|+++|.+|++.
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999964 5789999999999998
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 395 (540)
|+.++|+++|++|...|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++
T Consensus 304 -g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 304 -GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCC
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD-VGV 474 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~ 474 (540)
|++|. .||..+||+||.+|+++|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+
T Consensus 383 f~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 99997 4699999999999999999999999999999999999999999999999999999999999999985 799
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHH
Q 042609 475 QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELE 527 (540)
Q Consensus 475 ~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~ 527 (540)
.|+..+|++++.+|+ +.|++++|.+++++| ++.|+..++ .++.+++..+
T Consensus 459 ~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 459 KPRAMHYACMIELLG-REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred CCCccchHhHHHHHH-hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999 899999999998876 689999999 8888876533
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-52 Score=459.23 Aligned_cols=232 Identities=16% Similarity=0.119 Sum_probs=202.2
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYY 236 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~ 236 (540)
+...|+.++.++++.|++++|.++|+.|++ ||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPR--------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCC--------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 445677777777899999999999988764 588899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQED 316 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 316 (540)
.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|.. |+..+|+++|.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~- 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKN- 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhC-
Confidence 99999999999999999999999999999999999999999999999999999998853 6788899999998887
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999998888999999999999988888888888888888888888888888888888888888888888777
Q ss_pred HHHHH
Q 042609 397 KLMRS 401 (540)
Q Consensus 397 ~~m~~ 401 (540)
++|.+
T Consensus 448 ~~m~~ 452 (857)
T PLN03077 448 HNIPE 452 (857)
T ss_pred HhCCC
Confidence 76653
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.1e-52 Score=451.70 Aligned_cols=330 Identities=16% Similarity=0.141 Sum_probs=267.8
Q ss_pred ccCCCHHHHHHHhhCCcccchhhhHhhcc----------------cccchHHHHHHHHHhhcChhhHHHHHHHHHHhccc
Q 042609 127 ELDLHEDFVLKVLETPLVLGENLVCFFKW----------------VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEK 190 (540)
Q Consensus 127 ~~~l~~~~v~~~l~~~~~~~~~ll~~~~w----------------~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~ 190 (540)
+.++|..++..+...+...++.++.+|-- .+..+|+.+|.++++.|+.++|..+|+.|...+..
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~ 184 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 55677777777766677777887777621 34567999999999999999999999999876554
Q ss_pred C-------------------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 191 E-------------------------------KGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 191 ~-------------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
+ +..||+.+||+||.+|++.|++++|.++|++|.. ||..+||.+|
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li 260 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMI 260 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHH
Confidence 2 1124556667788888888888888888888863 7888888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.+|.+|++. |++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~ 339 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL-GSW 339 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc-CCH
Confidence 8888888899999999999888889999999999999999999999999999999889999999999999998887 889
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|
T Consensus 340 ~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 340 GEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred HHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999885 46788899999999999999999999999998889999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
.+.|+.|+..+|++||.+|++.|++++|.++|++|.+. |..+|+++|.+|++.|+.++|.++|++|
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988653 3333343333333333333333333333
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-51 Score=436.93 Aligned_cols=352 Identities=16% Similarity=0.188 Sum_probs=336.1
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETY 235 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~ 235 (540)
++..+|+.++.++++.++.+.|.+++..|.+.+.. ||+.+||.|+..|++.|++++|.++|++|.+ ||..+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~----~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~ 192 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFE----PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASW 192 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeH
Confidence 34567999999999999999999999999987765 8999999999999999999999999999974 899999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 315 (540)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|+.|+..+++.+|.+|++.
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 395 (540)
|++++|.++|++|.. +|..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 273 -g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 273 -GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred -CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999999964 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
+..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999964 69999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCcHHHH-HHHHHHHH
Q 042609 476 PNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL-KGLHLNGITR-ALIRAVKE 525 (540)
Q Consensus 476 p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~-~ll~a~~~ 525 (540)
||..||+.+|.+++ +.|++++|.++|+.|.+ .|+.|+..+| .++.++.+
T Consensus 424 Pd~~T~~~ll~a~~-~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 424 PNHVTFLAVLSACR-YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred CCHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 99999999999987 99999999999999975 6999999999 67776655
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=5.2e-21 Score=191.76 Aligned_cols=307 Identities=16% Similarity=0.104 Sum_probs=246.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD---SEKVGKIISWF 277 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~ 277 (540)
......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 333445677889999999999998764 44566888888889999999999999998887643222 24677888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc----ccHHHHHHHHHcCCC
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI----KPFSSVIRSLCRMKD 353 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~ 353 (540)
.+.|++++|..+|+++.+.. ..+..++..+...+... |++++|.+.++.+...+..+.. ..+..+...+.+.|+
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999988753 34466777777777776 8999999999998876533321 135567778889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNE 433 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 433 (540)
+++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998753 3356678888899999999999999999998764332356788999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCC
Q 042609 434 AKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK--ALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 434 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~g~~~~A~~l~~~m~~~g~~ 511 (540)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++.. .|+.+++..++++|.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9887 467677788999999999999999999998875 68999999888876632 45889999999999998887
Q ss_pred CcHH
Q 042609 512 LNGI 515 (540)
Q Consensus 512 p~~~ 515 (540)
|+..
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 7654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=5.6e-20 Score=204.62 Aligned_cols=353 Identities=16% Similarity=0.064 Sum_probs=296.5
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...+..+...+.+.|+.++|...|+.+.+..+. +...+..++..|...|++++|+.+++++.+.. +.+..+|..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 345677788888899999999999999887664 77889999999999999999999999998754 667889999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
+..++.+.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+.+.+.. ..+...+..+...+... |
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~ 683 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAA-K 683 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-C
Confidence 9999999999999999999998864 3567788899999999999999999999998754 33466777777777776 9
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
++++|..+++.+.... ..+...+..+...+.+.|++++|...|+++...+ |+..++..+..++.+.|++++|.+.++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998775 3456678888999999999999999999998864 444777888999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 398 LMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 398 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
.+.+.. +.+...+..+...|...|+.++|...|+++.+.. +.+..+++.+...+.+.|+ .+|+.+++++.+... -+
T Consensus 761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~ 836 (899)
T TIGR02917 761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NI 836 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CC
Confidence 998874 3478889999999999999999999999999875 5678899999999999999 889999999986532 24
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHHH
Q 042609 478 VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELEE 528 (540)
Q Consensus 478 ~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~~ 528 (540)
...+..+...+. +.|++++|.++++++.+.+.. +..++ .+..++.+.++
T Consensus 837 ~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 837 PAILDTLGWLLV-EKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 455556666665 889999999999999998765 55554 77777766554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.5e-19 Score=201.12 Aligned_cols=335 Identities=13% Similarity=0.031 Sum_probs=229.2
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
.+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPD-----FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4555566666667777777777766665443 55666667777777777777777777776543 44566677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
..+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. ..+...|..+...+... |++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~ 617 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA-GDL 617 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc-CCH
Confidence 77777777777777777776653 3455566667777777777777777777776543 33455666666666665 777
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
++|...|+.+.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776543 2244556777777777777777777777777652 335667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 479 (540)
.+.+ ..+...+..+...|.+.|++++|...++.+...+ |+..++..+...+.+.|++++|.+.++++.+.. +.+..
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 7664 2356667777777777888888888888777764 444666677777777888888888877777653 33555
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 480 EYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.++.+...|. +.|++++|.++|+++.+...
T Consensus 772 ~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 772 LRTALAELYL-AQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHHHHhCC
Confidence 6666665554 67788888888888877643
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.7e-20 Score=186.61 Aligned_cols=299 Identities=13% Similarity=0.083 Sum_probs=249.7
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhC
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---QETYYFTIEALSRR 245 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---~~t~~~ll~~~~~~ 245 (540)
...|++++|...|+.+.+..+. +..+|..+...|...|++++|+.+++.+...+..++ ..++..+...|.+.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4558899999999999987664 788999999999999999999999999987542222 35688889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---H-HHHHHHHHHHhCCchHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ---S-VVAFLISSLCQEDETVKL 321 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~-~~~~ll~~~~~~~~~~~~ 321 (540)
|++++|..+|+++.+.. ..+..+++.++..|.+.|++++|.+.++.+.+.+..+.. . .+..+...+... |++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR-GDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC-CCHHH
Confidence 99999999999998763 356788999999999999999999999999886633322 1 233344455565 99999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
|...|+++.+... .+...+..+...+.+.|++++|.++|+++...+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987542 245567888899999999999999999998764333356788999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK---LEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 7 467677788999999999999999999999887 5899999998888775 56899999999999988777776
Q ss_pred H
Q 042609 479 D 479 (540)
Q Consensus 479 ~ 479 (540)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6.9e-17 Score=170.35 Aligned_cols=329 Identities=15% Similarity=0.086 Sum_probs=265.8
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
....+.|+.++|..+++.+....+. +...+..++..+...|++++|++.|+++.... +.+...+..+...+.+.
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~-----~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKN-----GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCC-----chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3556779999999999998887776 67778888888889999999999999998864 45677888889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|++++|...+++.++.. +.+...+..+...+...|+.++|...++.+.... |+.......+..+... |++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~-g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNK-SRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99999999999998863 3457788889999999999999999999887655 3332222223345555 999999999
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHH
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP----AMEMLKLMRS 401 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 401 (540)
++.+......++...+..+...+.+.|++++|...++++.... +.+...+..+...|...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998776433444455566788899999999999999998764 3467788889999999999986 8999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY 481 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 481 (540)
... .+...+..+...+.+.|++++|...+++..+.. +-+...+..+...|.+.|++++|...|+++... .|+...+
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~ 354 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKW 354 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHH
Confidence 632 256788999999999999999999999999874 335677888899999999999999999999875 4555444
Q ss_pred HH-HHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 482 NK-LIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 482 ~~-ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.. +...+. ..|++++|.+.|++..+...
T Consensus 355 ~~~~a~al~-~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 355 NRYAAAALL-QAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhCh
Confidence 43 333454 88999999999999987643
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=4.7e-15 Score=156.50 Aligned_cols=295 Identities=9% Similarity=-0.007 Sum_probs=239.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
++.+....|++++|...|+.+.+..+. +...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~ 155 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVNVC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV 155 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344556689999999999999998876 78899999999999999999999999998763 456778888999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
..|++++|...++.+..... .+...+..+ ..+...|++++|..+++.+.+....++...+..+...+... |++++|+
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~ 232 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAI 232 (656)
T ss_pred HCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHH
Confidence 99999999999998877643 233344333 34788999999999999988765333444444445556665 9999999
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG----AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
..+++...... .+...+..+...+...|++++ |...|++..... +.+...+..+...+.+.|++++|...+++.
T Consensus 233 ~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 233 QTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999987643 345667888999999999986 899999998763 346778999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.... +...+..+..+|.+.|++++|...++++.+.. |+. ..+..+..++...|+.++|...|++..+.
T Consensus 311 l~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 311 LATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 887432 45677788899999999999999999999864 454 33444567889999999999999998865
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.8e-14 Score=150.96 Aligned_cols=295 Identities=11% Similarity=0.012 Sum_probs=153.7
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+.+.|++++|...|+...+.. |+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..++...
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK------PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34455566666666666655433 345566666666666677777777666666543 33455666666666666
Q ss_pred CChhHHHHHHHHHHHCCC----------------------------CC----CHHHHHHH--------------------
Q 042609 246 KIFDWAWSVCEKMIETGS----------------------------LP----DSEKVGKI-------------------- 273 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~----------------------------~p----~~~~~~~l-------------------- 273 (540)
|++++|..-|......+- .| ........
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 666666544432221100 00 00000000
Q ss_pred -------HHHH------HhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcc
Q 042609 274 -------ISWF------CKGGKAKEAHVVYTLAREKK-MYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIK 339 (540)
Q Consensus 274 -------i~~~------~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 339 (540)
+..+ ...+++++|.+.|+...+.+ ..|+.......+..+....|++++|+..|++...... -...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 0000 01234556666666665543 1232222222222222223666666666666554321 1233
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
.|..+...+...|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+... .+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHH
Confidence 45555556666666666666666665542 22445555666666666666666666666655421 13445555555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+.|++++|...|++..+.. +-+...|+.+...+...|++++|.+.|++..+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 6666666666666665542 22345566666666666666666666666554
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=3.8e-14 Score=149.95 Aligned_cols=338 Identities=13% Similarity=-0.017 Sum_probs=253.5
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----------
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCV---------- 229 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~---------- 229 (540)
.|..+..++.+.|++++|...++...+..+. +...|..+..+|...|++++|+.-|......+-.
T Consensus 162 ~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-----~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
T TIGR00990 162 YYSNRAACHNALGDWEKVVEDTTAALELDPD-----YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVE 236 (615)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3556667788889999999999999988765 7889999999999999999998776544321100
Q ss_pred ------------------C----CHHHHHHH---------------------------HHHH------HhCCChhHHHHH
Q 042609 230 ------------------A----NQETYYFT---------------------------IEAL------SRRKIFDWAWSV 254 (540)
Q Consensus 230 ------------------p----~~~t~~~l---------------------------l~~~------~~~~~~~~a~~~ 254 (540)
| ........ +... ...+++++|.+.
T Consensus 237 ~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~ 316 (615)
T TIGR00990 237 RLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARA 316 (615)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHH
Confidence 0 00000000 0000 122578899999
Q ss_pred HHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHh
Q 042609 255 CEKMIETG-SLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 255 ~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 331 (540)
|+..++.+ ..| ....++.+...+...|++++|...|++..+.. |+.. .|..+-..+... |++++|+..|+....
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLEL-GDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 99998865 223 45678888889999999999999999998754 5543 455555555555 999999999999877
Q ss_pred ccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 332 EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +-+...|
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 64 2346678889999999999999999999998864 3367778888899999999999999999988763 2257788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSP------VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
+.+...+...|++++|...|++..+.....+. ..++..+..+...|++++|.+++++...... .+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 99999999999999999999999886422111 1122223344457999999999999887642 2344677777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
..+. +.|++++|+++|++..+..-
T Consensus 550 ~~~~-~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 550 QLLL-QQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHH-HccCHHHHHHHHHHHHHHhc
Confidence 7765 89999999999999876643
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.75 E-value=1.1e-14 Score=140.92 Aligned_cols=347 Identities=15% Similarity=0.113 Sum_probs=250.4
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...|..+.+.+-..|++.+|..+++.+.+..++ .+..|-.+..++...|+.+.|.+.|.+.++.+ |+.....+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-----fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-----FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 356788888888889999999999999998876 88999999999999999999999999988753 65554433
Q ss_pred H-HHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------
Q 042609 238 T-IEALSRRKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKK------------------ 297 (540)
Q Consensus 238 l-l~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------ 297 (540)
- -......|++++|...|.+.++. .|. .+.|+.|...+-..|++..|++.|++..+.+
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 2 23333456666666666665553 222 2344455555555555555555555544322
Q ss_pred --------------CCCCHHHH-HHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 298 --------------MYPPQSVV-AFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 298 --------------~~p~~~~~-~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
..|+.... ..+-..|+. .|..+.|+..|++..+.... =...|+.|..++-..|++.+|.+.++
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHH
Confidence 11322221 112222233 37888888888877664322 13569999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 363 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
+..... +--....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.++. +|
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P 419 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KP 419 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cc
Confidence 988753 334567888999999999999999999888765 344 467889999999999999999999999886 56
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 042609 442 SP-VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRAL 519 (540)
Q Consensus 442 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~l 519 (540)
+. ..|+.+-..|-..|+++.|.+.+.+.+.. .|... .++.|-.. .+.+|++.+|++-+++..+........+-++
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi-~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASI-YKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHH-hhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 64 78999999999999999999999998865 45544 44555544 5699999999999999887543322344466
Q ss_pred HHHH
Q 042609 520 IRAV 523 (540)
Q Consensus 520 l~a~ 523 (540)
+..+
T Consensus 497 lh~l 500 (966)
T KOG4626|consen 497 LHCL 500 (966)
T ss_pred HHHH
Confidence 6554
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.2e-14 Score=134.74 Aligned_cols=307 Identities=15% Similarity=0.121 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+..+|..||.++++--..++|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 77899999999999999999999999998877789999999998775533 23788899999999999999999999
Q ss_pred HHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh----ccCCC----CcccHHH
Q 042609 276 WFCKGGKAKEA----HVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG----EARKY----AIKPFSS 343 (540)
Q Consensus 276 ~~~~~g~~~~A----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~----~~~~~----~~~~~~~ 343 (540)
+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++..+..+.+..++.++.. ...+| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 99999987765 567788999999999999999999988885554555555554432 32333 2333788
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 344 VIRSLCRMKDVHGAKTLLSKMISEG----PPPG---NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
.|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8889999999999998887765321 2233 22356677788888888999999999988877888888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C-------------------H-HHHHHHHHHHHHCCCC
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE-E-------------------F-DCALKLLNEMKDVGVQ 475 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~-------------------~-~~A~~~~~~m~~~g~~ 475 (540)
+....|+++-.-+++..++..|...+...-.-++..+++.. . + +.....-.+|......
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~ 521 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP 521 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC
Confidence 98888888888888888887764444444434444444333 0 0 1111112234444343
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 476 PNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 476 p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
| ...+.+.-.+. +.|..++|.+++.-+.+.+
T Consensus 522 ~--t~l~~ia~Ll~-R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 522 A--TSLNCIAILLL-RAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred h--hHHHHHHHHHH-HcchHHHHHHHHHHHHhcC
Confidence 3 34444444444 8889999999998886554
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.72 E-value=1.5e-13 Score=155.13 Aligned_cols=329 Identities=13% Similarity=0.080 Sum_probs=233.5
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH------
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI------ 239 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll------ 239 (540)
..+.+.|++++|...|+++.+..+. +...+..+...|...|++++|++.|++..+.. +.+...+..+.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-----DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 3556778999999999999887765 77888889999999999999999999988753 23343433332
Q ss_pred ------------------------------------HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 240 ------------------------------------EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA 283 (540)
Q Consensus 240 ------------------------------------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 283 (540)
..+...|++++|.+.+++.++.. +-+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 23445677788888888777753 23456667777788888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcc---------cHHHHHHHHHcCCCH
Q 042609 284 KEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIK---------PFSSVIRSLCRMKDV 354 (540)
Q Consensus 284 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---------~~~~li~~~~~~g~~ 354 (540)
++|...|+++.+.. |+..........+....++.++|+..++.+......++.. .+..+...+...|+.
T Consensus 512 ~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 512 SQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 88888888777643 3332222222223333477888888777654322211111 123455667788899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
++|..+++. .+.+...+..+...|.+.|++++|+..|++..+... .+...+..+...|...|+.++|.+.++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999888772 345666777888999999999999999999988742 36788999999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-C
Q 042609 435 KKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV--QP---NVDEYNKLIQSLCLKALDWRTAEKLLEDMRL-K 508 (540)
Q Consensus 435 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~-~ 508 (540)
.+.. +.+...+..+..++...|++++|.++++++..... .| +...+..+...+ ...|++++|++.|++.+. .
T Consensus 664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~-~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE-AQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhc
Confidence 7753 23456677788889999999999999999886422 12 123343344444 488999999999998853 3
Q ss_pred CCC
Q 042609 509 GLH 511 (540)
Q Consensus 509 g~~ 511 (540)
|+.
T Consensus 742 ~~~ 744 (1157)
T PRK11447 742 GIT 744 (1157)
T ss_pred CCC
Confidence 444
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=4.7e-13 Score=144.41 Aligned_cols=331 Identities=9% Similarity=0.029 Sum_probs=205.4
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+...+...|++++|..+|+...+..+. +...+..++..+...|++++|+..+++..+.. +.+.. +..+..++.
T Consensus 55 lA~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~ 127 (765)
T PRK10049 55 VAVAYRNLKQWQNSLTLWQKALSLEPQ-----NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHH
Confidence 333445556666666666666655443 55556666666666666666666666665542 33444 555666666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--------------------------------------
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE-------------------------------------- 285 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-------------------------------------- 285 (540)
..|+.++|...++++.+... .+...+..+..++...|..+.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 66666666666666666531 233344444445544444443
Q ss_pred --------HHHHHHHHHHc-CCCCCHH-HHH----HHHHHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHc
Q 042609 286 --------AHVVYTLAREK-KMYPPQS-VVA----FLISSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCR 350 (540)
Q Consensus 286 --------A~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 350 (540)
|...++.+.+. ...|+.. .+. ..+..+... |+.++|+..|+.+...+.. |+. .-..+...|..
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence 44444444432 1122221 111 113344554 7888888888888776532 221 12224667888
Q ss_pred CCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCC---HHHHHH
Q 042609 351 MKDVHGAKTLLSKMISEGPPP---GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-----------KPD---VYTYTG 413 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~---~~t~~~ 413 (540)
.|++++|...|+++....... .......+..++...|++++|..+++.+.+... .|+ ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 888888888888876543211 134455666677888888888888888876521 123 224456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHhC
Q 042609 414 LMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE-YNKLIQSLCLKA 492 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~ 492 (540)
+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++.... .|+... +...... ....
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~-al~~ 440 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWT-ALDL 440 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHH-HHHh
Confidence 6677788888888888888887764 445678888888888888888888888888865 355433 3333333 3477
Q ss_pred CCHHHHHHHHHHHHHC
Q 042609 493 LDWRTAEKLLEDMRLK 508 (540)
Q Consensus 493 g~~~~A~~l~~~m~~~ 508 (540)
|++++|+++++++++.
T Consensus 441 ~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888898888888875
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.71 E-value=2.2e-13 Score=153.76 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=143.1
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHH--------
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVA-NQETYY-------- 236 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p-~~~t~~-------- 236 (540)
..+...|++++|...|++..+..+. +...+..|...|.+.|++++|+..|++..+..-.. +...+.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-----~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-----DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 3456679999999999999987765 88999999999999999999999999998754211 111121
Q ss_pred ----HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 042609 237 ----FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISS 311 (540)
Q Consensus 237 ----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~ 311 (540)
.....+.+.|++++|...|++.++.. +.+...+..+...|...|++++|++.|+++.+.. |+ ...+..+...
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l 428 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 22346778999999999999999874 3466778889999999999999999999998754 44 3333333332
Q ss_pred HHhCCchHHHHHHHHHHhHhccCC--------CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 312 LCQEDETVKLALDMLDDFSGEARK--------YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAY 383 (540)
Q Consensus 312 ~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 383 (540)
+ .. +..++|+.+++.+...... .....+..+...+...|++++|...|++..+..+ -+...+..+...|
T Consensus 429 ~-~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~ 505 (1157)
T PRK11447 429 Y-RQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDL 505 (1157)
T ss_pred H-Hh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 2 22 3445555555443221100 0011233344444455555555555555554321 1333444455555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 042609 384 SKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~ 401 (540)
.+.|++++|...|+++.+
T Consensus 506 ~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.8e-13 Score=124.35 Aligned_cols=343 Identities=13% Similarity=0.095 Sum_probs=249.7
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYY 236 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~ 236 (540)
+..+|..+|.++|+....+.|++++++..+...+ .+..+||.+|.+-.-. ...++..+|....+.||.+|||
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k----v~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK----VYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe----eeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 4568999999999999999999999887765443 7899999999765422 2278999999999999999999
Q ss_pred HHHHHHHhCCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH----HHcCCCCC----HH
Q 042609 237 FTIEALSRRKIFDW----AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE-AHVVYTLA----REKKMYPP----QS 303 (540)
Q Consensus 237 ~ll~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m----~~~~~~p~----~~ 303 (540)
.++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++ ..+.+.|- ..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 67889999999999999999999999999888754 33343333 33334432 23
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhHhcc----CCCCcc---cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 304 VVAFLISSLCQEDETVKLALDMLDDFSGEA----RKYAIK---PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF 376 (540)
Q Consensus 304 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 376 (540)
-+...|..+... .+.+.|.++-.-+.... +.++.. -|..+....|+....+.-...|+.|.-.-.-|+..+.
T Consensus 358 FF~~AM~Ic~~l-~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 358 FFQSAMSICSSL-RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 344455555544 67777776655443221 122211 1677888889999999999999999866667888899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHH-------HHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG-QM--------E-----EACEIL-------NEAK 435 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~--------~-----~A~~~~-------~~m~ 435 (540)
..++++..-.|+++-.-+++..++..|...+...-.-++..+++.. +. . -|..++ .+|.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999998876656665555666666544 11 1 111222 2233
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 042609 436 KNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-V---QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 436 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~---~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
+. .-.....+.++-.+.+.|..++|.+++..+.+.+ - .|......-+++... +..+.-.|...++-|...+..
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~-~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK-VSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCch
Confidence 33 3455667788888899999999999999986433 2 333344445555543 677889999999999776543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=1.9e-12 Score=139.76 Aligned_cols=338 Identities=13% Similarity=0.039 Sum_probs=244.0
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
+....-.|+.++|.++|.......+. +...+..+...+...|++++|+++|++..+.. +.+...+..+...+..
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~-----~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQL-----PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34556679999999999988764432 67789999999999999999999999988763 4567778888889999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCCchHHH--
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVV-AFLISSLCQEDETVKL-- 321 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~~-- 321 (540)
.|++++|...+++.++.. +.+.. +..+..++...|+.++|...++++.+.. |+.... ..+...+.. .+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~-~~~~e~Al 170 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRN-NRLSAPAL 170 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-CCChHHHH
Confidence 999999999999998873 34555 8888999999999999999999999865 544333 333333322 244443
Q ss_pred --------------------------------------------HHHHHHHhHhc-cCCCCccc-HH----HHHHHHHcC
Q 042609 322 --------------------------------------------ALDMLDDFSGE-ARKYAIKP-FS----SVIRSLCRM 351 (540)
Q Consensus 322 --------------------------------------------a~~~~~~m~~~-~~~~~~~~-~~----~li~~~~~~ 351 (540)
|++.++.+... ...|+... +. ..+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 44444444432 11222211 11 113345677
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 042609 352 KDVHGAKTLLSKMISEGPP-PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP---DVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A 427 (540)
|++++|...|+.+.+.+.+ |+.. -..+..+|...|++++|+..|+++.+..... .......+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999877532 3322 2225678999999999999999987653211 134566677788999999999
Q ss_pred HHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC
Q 042609 428 CEILNEAKKNHS-----------RLS---PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKAL 493 (540)
Q Consensus 428 ~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g 493 (540)
..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+. ..|
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~-~~g 407 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ-ARG 407 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 999999987631 123 2355677788999999999999999998653 334555666665554 889
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHH
Q 042609 494 DWRTAEKLLEDMRLKGLHLNGITRA 518 (540)
Q Consensus 494 ~~~~A~~l~~~m~~~g~~p~~~t~~ 518 (540)
++++|++.+++.... .|+...+.
T Consensus 408 ~~~~A~~~l~~al~l--~Pd~~~l~ 430 (765)
T PRK10049 408 WPRAAENELKKAEVL--EPRNINLE 430 (765)
T ss_pred CHHHHHHHHHHHHhh--CCCChHHH
Confidence 999999999999875 46654443
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.63 E-value=3e-13 Score=131.11 Aligned_cols=317 Identities=14% Similarity=0.134 Sum_probs=224.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKV-GKII 274 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li 274 (540)
-..+|..+...+-..|++++|+.+++.|.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 56899999999999999999999999998864 446889999999999999999999999999886 4665443 3444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCC-cccHHHHHHHHHcCCC
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYA-IKPFSSVIRSLCRMKD 353 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 353 (540)
...-..|++++|...|.+..+.. |...+..+-++......|+...|+..|++..... |+ ...|-.|...|...+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhc
Confidence 55566899999999999888754 5443333334444445599999999999887643 33 3357778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANGGQMEEACEILN 432 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~ 432 (540)
++.|...+.+..... +-..+.+..|...|...|.++-|++.+++..+. .|+ ...|+.|..++-..|++.+|.+.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 888888887776542 223456666777777778888888888777765 333 4567778788777788888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 042609 433 EAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 433 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
+..... .-.....+.|...|...|.+++|..+|....+- .|... .++.|-..| ++.|++++|+.-+++.++ +.
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~-kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIY-KQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHH-HhcccHHHHHHHHHHHHh--cC
Confidence 777653 233456677777777778888888777777653 44433 344444333 477777777777777765 34
Q ss_pred CcHH-HH-HHHHHHHHHHH
Q 042609 512 LNGI-TR-ALIRAVKELEE 528 (540)
Q Consensus 512 p~~~-t~-~ll~a~~~l~~ 528 (540)
|... .+ ++...++++++
T Consensus 419 P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGD 437 (966)
T ss_pred chHHHHHHhcchHHHHhhh
Confidence 4431 12 44444555443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=4.2e-11 Score=127.29 Aligned_cols=339 Identities=13% Similarity=0.054 Sum_probs=222.6
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..++..+...|+.++|+..+++...-.. ........+...|...|++++|+++|+++.+.. +-+...+..++..
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n-----~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~ 145 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMN-----ISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMT 145 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3667777777888888888777652111 133334444557777788888888888887764 3456666677777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVK 320 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 320 (540)
+...++.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+.+ |+.. .+..++..+... |-..
T Consensus 146 y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~-~~~~ 220 (822)
T PRK14574 146 QADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRN-RIVE 220 (822)
T ss_pred HhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-CCcH
Confidence 78888888888888887765 4555555555555545566656888888887765 4433 333333333332 3222
Q ss_pred HHHHH------------------------------------------------HHHhHhc-cCCCCccc-----HHHHHH
Q 042609 321 LALDM------------------------------------------------LDDFSGE-ARKYAIKP-----FSSVIR 346 (540)
Q Consensus 321 ~a~~~------------------------------------------------~~~m~~~-~~~~~~~~-----~~~li~ 346 (540)
.|+++ ++.+... +..|.... ..-.+-
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 22222 2222211 11122111 223455
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-----LKPDVYTYTGLMSGYANG 421 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~ 421 (540)
++...+++.++.+.|+.+...|.+.-..+--.+.++|...++.++|+.+|+.+.... ..++......|.-+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 677888899999999999887765445577788999999999999999999986642 123444467888999999
Q ss_pred CCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHS-----------RLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
+++++|..+++.+.+.-. .||. ..+..++..+...|+..+|++.++++.... +-|......+-..
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999987321 1222 344556777888999999999999998653 3356666666655
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCcHH
Q 042609 488 LCLKALDWRTAEKLLEDMRLKGLHLNGI 515 (540)
Q Consensus 488 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 515 (540)
+ ...|...+|+++++..... .|+..
T Consensus 460 ~-~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 460 Y-LARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred H-HhcCCHHHHHHHHHHHhhh--CCccH
Confidence 5 4788999999999766654 55543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.55 E-value=1.8e-10 Score=122.53 Aligned_cols=332 Identities=10% Similarity=0.048 Sum_probs=247.9
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
...+...|++++|.++|+++.+..+. +...+..++..|...++.++|++.++++... .|+...+..++..+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-----n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-----NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHh
Confidence 34566679999999999999998876 7888889999999999999999999999876 4666666555555555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----------------------------------
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVY---------------------------------- 290 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~---------------------------------- 290 (540)
.++..+|.+.++++.+.. +-+...+..++....+.|-...|.++.
T Consensus 182 ~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 666666999999999874 335555566666655555443333322
Q ss_pred --------------HHHHHc-CCCCCH-HHH----HHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHc
Q 042609 291 --------------TLAREK-KMYPPQ-SVV----AFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCR 350 (540)
Q Consensus 291 --------------~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 350 (540)
+.+... +-.|.. ..| .-.+.++... ++..++++.|+.+...+.+....+-..+.++|..
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r-~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR-HQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 222221 111322 111 1245555665 8999999999999988876556678899999999
Q ss_pred CCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------------CCCHH-HH
Q 042609 351 MKDVHGAKTLLSKMISEG-----PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-------------KPDVY-TY 411 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-t~ 411 (540)
.+++++|..+++.+.... .+++......|.-+|...+++++|..+++.+.+.-. .||-. .+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999997542 233555568899999999999999999999987411 12222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKLIQSLCL 490 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 490 (540)
..++..+...|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++..... .|+ ..+......++ .
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~a-l 495 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETA-M 495 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHH-H
Confidence 445677889999999999999998875 568899999999999999999999999777654 454 34444444444 4
Q ss_pred hCCCHHHHHHHHHHHHHCC
Q 042609 491 KALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~~g 509 (540)
..|+|++|.++.+.+.+..
T Consensus 496 ~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRS 514 (822)
T ss_pred hhhhHHHHHHHHHHHHhhC
Confidence 7899999999999998763
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=6.9e-11 Score=117.81 Aligned_cols=257 Identities=14% Similarity=0.083 Sum_probs=129.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 208 SKLGKGKAAFEVFNKFGDYGCVANQETYY--FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 285 (540)
.+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|...++.+.+.. +-+..+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 5566666666666666543 34433222 22445556666666666666665553 2344555566666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI 365 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (540)
|.+++..+.+.+..++.. ...+- ..+|..++.......+.+...++|+.+-
T Consensus 206 a~~~l~~l~k~~~~~~~~-~~~l~----------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEH-RAMLE----------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHH----------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 666666666554332111 11000 0112222322233333444444444443
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 366 SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445 (540)
Q Consensus 366 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (540)
+. .+.+......+...+...|+.++|.+++++..+. .||.. -.++.+....++.+++.+..+...+.. +-|+..
T Consensus 257 ~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 257 RK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred HH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 22 2334555555566666666666666666555553 23331 112222233456666666666655542 234445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+..+...|.+.|++++|.+.|+...+. .|+..++..+...+. +.|+.++|.+++++-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~-~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD-RLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 555666666666666666666666543 456555555555543 556666666666544
No 26
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=8.3e-11 Score=106.04 Aligned_cols=292 Identities=14% Similarity=0.084 Sum_probs=209.9
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHH
Q 042609 209 KLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD---SEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 285 (540)
-.++.++|+++|-+|.+.. +-+..+.-+|-+.+-+.|.+|.|++++..+.++--.+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3678999999999998743 34555667788889999999999999999887621111 2334466777899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcc----cHHHHHHHHHcCCCHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIK----PFSSVIRSLCRMKDVHGAKTLL 361 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~ 361 (540)
|+.+|..+.+.+. --.....-++.-|-.. .+|++|++.-+++...+..+..+ .|.-+...+....+++.|..++
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999887551 1223334455555554 89999999998887765443322 1555566666778999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 362 SKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 362 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
.+..+.+. ..+..--.+-+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+.. +
T Consensus 204 ~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 99887532 24444455677888999999999999999998655556678889999999999999999999998874 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Q 042609 442 SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK--ALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~g~~~~A~~l~~~m~~~ 508 (540)
+...-..+.+.-....-.+.|...+.+-+.. +|+...+..+|..-... .|.+.+-+-++++|...
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444445555444445556666665555544 69999999999754322 34466677777777644
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=5.6e-11 Score=118.44 Aligned_cols=268 Identities=12% Similarity=0.043 Sum_probs=163.3
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQET-YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG--KIISWFCKGGKAKEA 286 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A 286 (540)
.|++++|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555543321 11222 222233335556666666666666543 23332221 223455555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 287 HVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 287 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
...++++.+.. |+ +......+...|.+.|++++|.+++..+.+
T Consensus 173 l~~l~~~~~~~--P~-----------------------------------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 173 RHGVDKLLEVA--PR-----------------------------------HPEVLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHhcC--CC-----------------------------------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555554433 22 233344555555556666666666666665
Q ss_pred CCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 367 EGPPPGN-------AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 367 ~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|..++++..+.
T Consensus 216 ~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-- 292 (398)
T PRK10747 216 AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-- 292 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 4433211 13344444444455566667777666443 2347788899999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-H
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-A 518 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ 518 (540)
.++.... ++.+....++.+++.+..+...+. .|+...+...+..++.+.|+|++|.+.|++..+. .|+..++ .
T Consensus 293 ~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~ 366 (398)
T PRK10747 293 QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAW 366 (398)
T ss_pred CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 4555322 344445669999999999999976 5676666656656667999999999999999985 6777775 5
Q ss_pred HHHHHHHHH
Q 042609 519 LIRAVKELE 527 (540)
Q Consensus 519 ll~a~~~l~ 527 (540)
+-.++.+++
T Consensus 367 La~~~~~~g 375 (398)
T PRK10747 367 LADALDRLH 375 (398)
T ss_pred HHHHHHHcC
Confidence 555555544
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=1.1e-10 Score=116.95 Aligned_cols=130 Identities=15% Similarity=0.039 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT---YTGLMSGYANGGQMEEACEILNEAKKNHSRLSP--VTY 446 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 446 (540)
+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.. +-|+ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 5555555666666666666666666666554 222221 1111111223455566666666555542 2223 444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
.++...|.+.|++++|.+.|+........|+...+..+...+. +.|+.++|.+++++-
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~-~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD-QAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 5566666666666666666664332223466666555555443 566666666666654
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=1.2e-09 Score=118.71 Aligned_cols=322 Identities=12% Similarity=0.047 Sum_probs=225.3
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHhCCC--
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY-G-CVANQETYYFTIEALSRRKI-- 247 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g-~~p~~~t~~~ll~~~~~~~~-- 247 (540)
+...++.+.+..|-+..+. +....-.+.-.....|+.++|.++|+..... + -.++.....-++..|.+.+.
T Consensus 356 ~~~~~~~~~~~~~y~~~~~-----~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPA-----NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred CchhHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 5556677777666654332 5555555555566788888888888887652 1 22344445566667766654
Q ss_pred -hhHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 248 -FDWAWSV----------------------CEKMIET-GS-LP--DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 248 -~~~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
...+..+ ++..... +. ++ +...|..+..++.. |+.++|...|.+..... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2222222 2222211 11 23 56778888878776 78888999888877654 6
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 380 (540)
+......+...+... |++++|...|+++... .|+...+..+...+.+.|+.++|...+++..+.. +.+...+..+.
T Consensus 508 d~~~~L~lA~al~~~-Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 508 DAWQHRAVAYQAYQV-EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred chHHHHHHHHHHHHC-CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 544322223333344 9999999999987554 3344456677788889999999999999998764 22333343444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFD 460 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 460 (540)
..+...|++++|...+++..+. .|+...|..+...+.+.|+.++|...+++..+.. +-+...++.+...+...|+.+
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4455669999999999999876 5678889999999999999999999999999875 346678888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 461 CALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 461 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
+|+..+++..+... -+...+..+-.++. ..|++++|+..+++..+...
T Consensus 661 eAi~~l~~AL~l~P-~~~~a~~nLA~al~-~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 661 QSREMLERAHKGLP-DDPALIRQLAYVNQ-RLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 99999999987532 24455566665655 88999999999999987643
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.1e-10 Score=117.10 Aligned_cols=300 Identities=10% Similarity=0.020 Sum_probs=216.4
Q ss_pred hHHHHHHHHH--hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH--HHH
Q 042609 160 VVDALLKAIC--SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ--ETY 235 (540)
Q Consensus 160 ~~~~li~~~~--~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~--~t~ 235 (540)
.+..+..+.. ..|+++.|.+.+....+..+. ....+-.....+...|++++|.+.|.+..+.. |+. ...
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~-----~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~ 156 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAE-----PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHH
Confidence 4445555544 459999999999877665432 23444555677788899999999999987643 444 344
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL--- 312 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--- 312 (540)
-.....+...|+++.|...++.+.+.. +-+..+...+...|.+.|++++|.+.+..+.+.++.+...........+
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445788889999999999999999885 3467788899999999999999999999999987543333222222222
Q ss_pred HhCCchHHHHHHHHHHhHhccCC---CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC
Q 042609 313 CQEDETVKLALDMLDDFSGEARK---YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV-FNSVISAYSKAGD 388 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~ 388 (540)
... +..+++.+.+..+...... .+...+..+...+...|+.++|.+++++..+......... .....-.....++
T Consensus 236 l~~-~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 236 LDE-AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHH-HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 222 2333334455555544321 3677788899999999999999999999998633222111 1112222334577
Q ss_pred hhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDV---YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKL 465 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 465 (540)
.+.+.+.++...+. .|+. ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++
T Consensus 315 ~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 315 NEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred hHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899998887766 3443 556688889999999999999999644444478999999999999999999999999
Q ss_pred HHHHH
Q 042609 466 LNEMK 470 (540)
Q Consensus 466 ~~~m~ 470 (540)
|++..
T Consensus 393 ~~~~l 397 (409)
T TIGR00540 393 RQDSL 397 (409)
T ss_pred HHHHH
Confidence 99865
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.49 E-value=4.4e-10 Score=122.10 Aligned_cols=326 Identities=9% Similarity=0.008 Sum_probs=233.0
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hHHHHHH------------HHH---------
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK---GKAAFEV------------FNK--------- 222 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~------------f~~--------- 222 (540)
...+.|+.++|..+|...-.. ...+.++...-+-|+..|.+.+. ..+++.+ ..+
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPF--QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCC--CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 445678889999999877664 12223466677788888888876 4444333 111
Q ss_pred -Hhh-CCC-CC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 223 -FGD-YGC-VA--NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 223 -m~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
... .+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++...
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 111 111 34 66777777777776 8888999988888765 366555445556667999999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 298 MYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN 377 (540)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 377 (540)
.|+...+..+...+... |+.++|...++........ ....+..+...+.+.|++++|...+++..+. .|+...|.
T Consensus 539 -~p~~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAA-GNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred -CCCcHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 34455555555555665 9999999999998876421 2222333334445669999999999999875 45788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
.+..++.+.|++++|+..|++....... +...++.+...+...|+.++|+.++++..+.. +-+...+..+..++...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999887422 56677888889999999999999999999874 346788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 458 EFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
++++|...|++..+. .|+......-+.....+..+++.|.+-+++-..
T Consensus 692 d~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 692 DMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999865 354422221221122244456666666555543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=8.3e-10 Score=112.39 Aligned_cols=326 Identities=13% Similarity=0.096 Sum_probs=249.5
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
-.|+.++|.+++.++.+..+. +...|.+|...|-..|+.++++..+-..-... +-|...|..+-....+.|+++
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 349999999999999987775 88999999999999999999999876654443 567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhCCchHHHHHHH
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSV----VAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~~a~~~ 325 (540)
.|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.......|..- ....+..+... ++.+.|.+.
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~-~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH-NERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 9999999999985 35555555667889999999999999999988663112221 22245555555 566888888
Q ss_pred HHHhHhc-cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHH
Q 042609 326 LDDFSGE-ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG---------------------------PPPGNAVFN 377 (540)
Q Consensus 326 ~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------~~p~~~~~~ 377 (540)
++..... +-..+...++.++..+.+..+++.|......+.... ..++..++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 8877652 233455668999999999999999998888877611 22333331
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
.++-++......+....+.....+..+ .-+...|.-+..+|.+.|++.+|+.+|..+.....--+...|--+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 222334455555555556666666653 335667889999999999999999999999987666678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.|..++|.+.|+..+.. .|+..--..=+..+..+.|+.++|.+.++.|.
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999864 45544444444444558999999999999965
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.6e-13 Score=130.62 Aligned_cols=260 Identities=18% Similarity=0.163 Sum_probs=59.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVA-NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG 280 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 280 (540)
.+...+.+.|++++|++++++......+| |..-|..+...+...++++.|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44556666777777777775443322123 333333344455556667777777777666542 234445555555 466
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc-CCCCcccHHHHHHHHHcCCCHHHHHH
Q 042609 281 GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEA-RKYAIKPFSSVIRSLCRMKDVHGAKT 359 (540)
Q Consensus 281 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~ 359 (540)
+++++|.++++..-++. ++...+..++..+... ++++++.++++.+.... ...+...|..+...+.+.|+.++|..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666655443322 2233333334333333 45555555555443221 12233334444444455555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 360 LLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 360 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
++++..+.. +.|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|...+++..+..
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 555554431 1134444444545555555555444444443331 1223334444445555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+.|+.....+..++...|+.++|.++..+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 224444444455555555555555544443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=6e-13 Score=126.60 Aligned_cols=259 Identities=17% Similarity=0.148 Sum_probs=105.7
Q ss_pred HHHHHhhcChhhHHHHHHH-HHHh-cccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 165 LKAICSSVGKKEVYALWDI-VKEI-GEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~-~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
...+.+.|++++|.++++. +... .+. |...|..+...+...++++.|++.++++...+ +-+...+..++..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~-----~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPD-----DPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccc-ccccccccccccc-
Confidence 3455677999999999954 4443 233 67778888888888999999999999998866 3356667777777
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP-PQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~ 321 (540)
...+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+....-.+ +...|..+-..+.+. |+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL-GDPDK 164 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC-CHHHH
T ss_pred cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHH
Confidence 78899999999998776553 566677888899999999999999999987644333 334444444444554 99999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
|++.+++..+.... +......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+
T Consensus 165 A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999876432 46678889999999999999999998887653 45666788899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
.. +.|......+..++...|+.++|.++.++..+
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT-----------------
T ss_pred cc-cccccccccccccccccccccccccccccccc
Confidence 63 23778888889999999999999999887654
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.9e-10 Score=114.20 Aligned_cols=360 Identities=13% Similarity=0.121 Sum_probs=225.5
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--------------
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYG-------------- 227 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-------------- 227 (540)
.+.+++-..|++++|..+|-+....... + +..+--|...|.+.|+.+.+...|+...+..
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-----~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADND-----NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCC-----CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 4455555556666666666554443332 1 2333444555555555555555555543321
Q ss_pred -----------------------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhc
Q 042609 228 -----------------------CVANQETYYFTIEALSRRKIFDWAWSVCEKM----IETGSLPDSEKVGKIISWFCKG 280 (540)
Q Consensus 228 -----------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~ 280 (540)
.+.|...|-.+...+-..+-+. ++.+|... ...+-.+-....|.+...+...
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 1233444444444443332222 24444333 3445557788999999999999
Q ss_pred CCHHHHHHHHHHHHHc---CCCCCH-----HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-----------------
Q 042609 281 GKAKEAHVVYTLAREK---KMYPPQ-----SVVAFLISSLCQEDETVKLALDMLDDFSGEARK----------------- 335 (540)
Q Consensus 281 g~~~~A~~~~~~m~~~---~~~p~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~----------------- 335 (540)
|+++.|...|+..+.. ...++. .|....+..+....++.+.|.++|..+......
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~ 545 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNN 545 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccC
Confidence 9999999999988765 122333 233334444444446777777777776654211
Q ss_pred ----------------CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------c
Q 042609 336 ----------------YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE-GPPPGNAVFNSVISAYSK------------A 386 (540)
Q Consensus 336 ----------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~ 386 (540)
.+...++.+...+.+..++..|..-|+...+. ...+|..+.-+|-+.|.. .
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 12222333333444444455555544443322 112344444444443332 2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 387 GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (540)
+..++|+++|.+..+...+ |...-|-+--.++..|++.+|..+|.+..+... -+..+|-.+..+|...|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 4578889999888877543 778888888889999999999999999998752 35567889999999999999999999
Q ss_pred HHHH-HCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHhhh
Q 042609 467 NEMK-DVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDAI 531 (540)
Q Consensus 467 ~~m~-~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~~~~ 531 (540)
+... +.+-.-+....+.|-.++. +.|++.+|.+.+.......+.-..+-|++.-...++...-.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y-~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l 768 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWY-EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL 768 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence 9866 5555567788888888888 78889999999988888766666677777777766665443
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.7e-09 Score=97.70 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=215.7
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhC
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN------QETYYFTIEALSRR 245 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~------~~t~~~ll~~~~~~ 245 (540)
...++|..+|-.|.+..+. +..+--+|.+.|.+.|.+++|+++.+.+.+. || ......|.+-|...
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-----t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-----TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred cCcchHHHHHHHHHhcCch-----hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 4566899999999886554 6778889999999999999999999998764 44 23455677788899
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HH-HHHHHHHhCCchHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSV---VA-FLISSLCQEDETVKL 321 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~-~ll~~~~~~~~~~~~ 321 (540)
|-+|.|+++|..+.+.|. .-......|+..|-+..+|++|+.+-+++.+.+-.+...- |. -+-..+... .+.+.
T Consensus 121 Gl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~-~~~d~ 198 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS-SDVDR 198 (389)
T ss_pred hhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh-hhHHH
Confidence 999999999999988652 4455677899999999999999999998888764443322 11 122222333 78999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
|...+.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.+
T Consensus 199 A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 199 ARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999998877644 34445567788889999999999999999876655566788999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 042609 402 RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK---LEEFDCALKLLNEMKD 471 (540)
Q Consensus 402 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 471 (540)
....++ .-..+-..-....-.+.|...+.+-... +|+...+..||..-.. .|...+.+.+++.|..
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 743333 3333433334455566666666665555 6999999999987643 4557777788888873
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.9e-10 Score=103.77 Aligned_cols=305 Identities=14% Similarity=0.113 Sum_probs=211.6
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHH-HH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSL--PDSEKVGKIISWFCKGGKAK-EA 286 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~-~A 286 (540)
..+.+++++=.......|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--.+.++. -|
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 3455566666666666666555555555555555667777777777777776321 25566666543332222221 12
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 287 HVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 287 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
..++.- .+ .. ..|.. +|..|+...++.++|...|++..+.+.+ ....|+.|.+-|...++...|..-++..++
T Consensus 320 ~~v~~i-dK--yR--~ETCC-iIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 320 QNVSNI-DK--YR--PETCC-IIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHh-cc--CC--cccee-eehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 222221 11 11 12222 3444444448899999999998877644 355689999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 367 EGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY 446 (540)
Q Consensus 367 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (540)
.+ +.|-..|-.|-++|.-.+...-|+-.|++..... +-|...|.+|-.+|.+.+++++|+..|.+....| ..+...|
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 63 4588899999999999999999999999988763 2378999999999999999999999999999887 3466889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH-HHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKD----VG-VQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNG-ITRALI 520 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~ll 520 (540)
..|.+.|-+.++.++|.+.|++.++ .| +.|...--..++.-+..+.+++++|..+......- .+.. ....|+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~Ll 547 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 9999999999999999999988764 23 34434444555666667899999998877666543 3322 333566
Q ss_pred HHHHHH
Q 042609 521 RAVKEL 526 (540)
Q Consensus 521 ~a~~~l 526 (540)
+.++..
T Consensus 548 Reir~~ 553 (559)
T KOG1155|consen 548 REIRKI 553 (559)
T ss_pred HHHHHh
Confidence 555443
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=7.6e-10 Score=103.99 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=129.6
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
|++++|.+.|++.......-....|+ +.-.+-..|++++|+++|-++... +.-++.+.--+.+.|-...+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 55666666666555432211111122 122234556666666666655432 2234455555566666666677777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
.+.... ++-|....+-|...|-+.|+-..|.+.+.+--+. ++-|..+..-|...|....-+++|+.+|++..- ++|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 554433 3446677777888888888888888877654443 355677777788888888888999999988764 579
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHH
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIR 521 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~ 521 (540)
+..-|-.||..+.++.|++.+|+.+++...++ +.-|.... -|++
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHH
Confidence 99999999999888999999999999998765 33343333 3444
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.9e-09 Score=99.13 Aligned_cols=287 Identities=15% Similarity=0.076 Sum_probs=164.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVV 289 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 289 (540)
.|+|.+|+++..+-.+.+ +.....|.....+.-+.|+.+.+-+++.+.-+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455555555555554444 1223334444444555555555555555555442234444444555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc-------ccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 290 YTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI-------KPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 290 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
.+.+.+.+ .-...........|... |++.....++..|.+.+.-.+. .+|..+++-....+..+.-...|+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555443 11233334444444444 5555555555555555433222 336666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS 442 (540)
Q Consensus 363 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (540)
..-.. ..-+...-.+++.-+.++|+.++|.++.++..+++..|+ -..+-.+.+.++.+.-.+..++-.+.. +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 65433 333455556667777777777777777777777766555 222233455666666666666555432 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 443 PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+-.+.+|-..|.+.+.|.+|...|+...+. .|+..+|+.+-++|. +.|+..+|.+..++-...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~-~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALD-QLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHH-HcCChHHHHHHHHHHHHH
Confidence 466777777777777788887777766654 577777777777776 777777777777766533
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2e-10 Score=113.33 Aligned_cols=287 Identities=10% Similarity=-0.021 Sum_probs=192.1
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHH-
Q 042609 212 KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETG--SLPDSEKVGKIISWFCKGGKAKEAHV- 288 (540)
Q Consensus 212 ~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~- 288 (540)
+.++|+..|.+..+. +.-+......+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+.-+-+. -+..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888875443 33444666777788888888888888888877653 123556666665433221 1111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042609 289 VYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG 368 (540)
Q Consensus 289 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 368 (540)
+-+.+.+.+ .-...+|.++=..|.-+ ++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 112222222 23456777666666655 7888888888887764322 567788888888888888888888887743
Q ss_pred CCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 369 PPPGNAVFNS---VISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT 445 (540)
Q Consensus 369 ~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (540)
.|...||+ |.-.|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.++|+++++++..... -|+..
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~ 559 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLC 559 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchh
Confidence 44455554 455688888888888888888776433 566667777777888888888888888887653 24444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
---.+..+...+++++|++.++++++. .|+..+...++.--+++.|+.+.|+.-|.-|.+...++..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 334456666778888888888888874 5777666666665566788888888887777766555544
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=1.2e-08 Score=95.18 Aligned_cols=291 Identities=14% Similarity=0.070 Sum_probs=228.5
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
.|++.+|.++...-.+.+.. .+..|-.-+.+--..|+.+.+-.++.+.-+.--.++...+-+..+.....|+++.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-----p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-----PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-----hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh
Confidence 49999999999887776664 4566777777888899999999999999876335667778888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhCCchHHHHH
Q 042609 251 AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-------VVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 251 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~~~~~~a~ 323 (540)
|..-.+.+.+.+. .+..+......+|.+.|++.....+...+.+.+...+.. +|..++...... +..+.-.
T Consensus 172 A~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~-~~~~gL~ 249 (400)
T COG3071 172 ARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD-NGSEGLK 249 (400)
T ss_pred HHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc-ccchHHH
Confidence 9999999998863 567788899999999999999999999999998766543 455566554443 4444444
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR- 402 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 402 (540)
..|+..... .+-+...-.+++.-+.++|+.++|.++..+..+.+..|+.. . .-.+.+-++.+.-++..+.-.+.
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhC
Confidence 566655433 34455667788889999999999999999999887776622 2 22455677777777777665544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 403 GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
+.. ...+.+|-..|.+++.+.+|...|+...+. .|+..+|+.+.++|.+.|+.++|.+++++....-.+|+
T Consensus 325 ~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 325 PED--PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 444 477889999999999999999999988776 69999999999999999999999999998764333333
No 42
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.2e-12 Score=88.03 Aligned_cols=50 Identities=28% Similarity=0.402 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999888999999999999888874
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=3.6e-08 Score=97.10 Aligned_cols=335 Identities=16% Similarity=0.077 Sum_probs=263.7
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----hhCCCCCCHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKF----GDYGCVANQETYYFTI 239 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~~~g~~p~~~t~~~ll 239 (540)
|.-++.+...|+.|.++++...+.-+. +...|-+-...=-.+|+.+....+..+- ...|+..|...|-.=.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~ipt-----d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPT-----DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 344566666778888888888887765 7888888888778888888888887664 4578888999898888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLP--DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
..|-+.|..-.+..+....+..|+.- ...||+.-.+.|.+.+.++-|..+|....+- .|...+.-.-...+-+..|
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcC
Confidence 88988899888888888888887643 3567888888999999999999999988773 3544443333334455569
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
..+....+|++....-. -....|-.....+-..|++..|..++.+..+.... +...|-+-+..-..+.+++.|..+|.
T Consensus 565 t~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHH
Confidence 99999999999887633 34455667777778899999999999999887443 77889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 398 LMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 398 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+.... .|+...|.--+..---.++.++|.+++++.++. -|+ ...|..+-+.+-+.++++.|...|..-.+. -|
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP 716 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CP 716 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CC
Confidence 88775 678888877777777789999999999998886 344 467888888888899999998888765543 46
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
+..-...++.-+-.+.|..-+|..++++-+-++....
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 6666777776677778888999999998887765543
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.6e-12 Score=86.36 Aligned_cols=49 Identities=43% Similarity=0.830 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 371 PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=2.3e-08 Score=102.09 Aligned_cols=339 Identities=14% Similarity=0.139 Sum_probs=249.7
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
..|..|...+-..|+.+++...|-.+....++ |...|-.+.....+.|++++|.-.|.+.++.. +++...+--=
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-----d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~er 247 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-----DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYER 247 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHH
Confidence 45677888888889999999998888777776 88999999999999999999999999999875 5665566666
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG----KIISWFCKGGKAKEAHVVYTLAREKK-MYPPQSVVAFLISSLC 313 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 313 (540)
...|-+.|+...|...|.++.....+.|..-+. .+++.|...++-+.|.+.++.....+ -..+...++.+...+.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 788999999999999999999875433333333 44566777788899999988877622 2334455666666666
Q ss_pred hCCchHHHHHHHHHHhHhcc---------------------------CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 314 QEDETVKLALDMLDDFSGEA---------------------------RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 314 ~~~~~~~~a~~~~~~m~~~~---------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
+. ..++.+......+.... ..++... --++-++.+....+....+.....+
T Consensus 328 ~~-~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 328 KN-KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred Hh-HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH
Confidence 66 78888888887776611 1122222 1233344455555555555555555
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 367 EG--PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 367 ~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
.. +.-+...|.-+..+|.+.|++.+|+.+|..+...-..-+...|-.+..+|...|..++|.+.++..+... +-+..
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D 484 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLD 484 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchh
Confidence 55 3445667888999999999999999999999988555578899999999999999999999999999863 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKD--------VGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
.--.|...|-+.|+.++|.+.+..|.. .+..|+..........|. +.|+.++-+.+...|+.
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~-~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF-QVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 556677788899999999999999652 223444444444444444 67787776666666654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=9.3e-10 Score=108.67 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTG--- 413 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--- 413 (540)
..+|.++.++|.-.++.+.|++.|++.... .| ...+|+.+-.-+.....+|+|...|+....- |...|++
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYG 494 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYG 494 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHh
Confidence 344555555555555555555555544432 22 3444444444444444555555554444322 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 414 LMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
|.-.|.+.++++.|+-.|++..+.. +-+.+....+...+-+.|+.|+|++++++...
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 2333445555555555555444443 12333333344444444555555555555443
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.31 E-value=3.7e-08 Score=97.02 Aligned_cols=318 Identities=10% Similarity=0.049 Sum_probs=236.8
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
.|..+.-..+|++....-++ ....|-.....+...|++..|..++.+..+.. +-+...|-..++......+++.
T Consensus 563 hgt~Esl~Allqkav~~~pk-----ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPK-----AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHH
Confidence 36667777777777776655 67788888888888899999988888887764 4467788888888888888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhH
Q 042609 251 AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFS 330 (540)
Q Consensus 251 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 330 (540)
|..+|.+.... .|+..+|.--+..-.-.+..++|.+++++..+ ..|+..-+..+++......++.+.|.+.|..=.
T Consensus 637 aR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 637 ARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 99888887765 46666666666666667888889888888776 357777777777777776677888877765433
Q ss_pred hccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 331 GEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 331 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
+. ++-.+-.|..+...=-+.|.+-.|..++++....+ +.|...|-..|.+=.+.|..+.|..++.+..+. ++-+...
T Consensus 713 k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~L 789 (913)
T KOG0495|consen 713 KK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLL 789 (913)
T ss_pred cc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchh
Confidence 21 22233346666666677888889999999887664 347788888899999999999999888887776 4446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV-DEYNKLIQSLC 489 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 489 (540)
|..-|....+.++-.++.+.+++. .-|+...-++...|....++++|.+.|.+..+.+ ||. .+|.-+. .|.
T Consensus 790 WaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fy-kfe 861 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFY-KFE 861 (913)
T ss_pred HHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHH-HHH
Confidence 888888888877766666655543 4477778888889999999999999999998764 554 4454454 444
Q ss_pred HhCCCHHHHHHHHHHHHHCC
Q 042609 490 LKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 490 ~~~g~~~~A~~l~~~m~~~g 509 (540)
.+.|.-++-.+++.+.....
T Consensus 862 l~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHhCCHHHHHHHHHHHhccC
Confidence 57887788888888887653
No 48
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.5e-08 Score=104.12 Aligned_cols=334 Identities=14% Similarity=0.127 Sum_probs=232.5
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCCH------HHHHHHHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY---GCVANQ------ETYYFTIEAL 242 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---g~~p~~------~t~~~ll~~~ 242 (540)
++...+..++..+...-......+-+...|.+...+...|++.+|...|...+.. ...+|. .+--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 3443444444444433333333367899999999999999999999999998654 122333 1223344555
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 321 (540)
-..++++.|.+.|..+++.. |. +..|--+..+....+...+|...+......+ -+.....++++-+......+..
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcc
Confidence 66779999999999998862 43 3334444444445577888998888877644 3333444566644444477777
Q ss_pred HHHHHHHhHhcc-CCCCcccHHHHHHHHH------------cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 322 ALDMLDDFSGEA-RKYAIKPFSSVIRSLC------------RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 322 a~~~~~~m~~~~-~~~~~~~~~~li~~~~------------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
|.+-|......- ..+|..+.-+|.+.|. ..+..++|+++|.+.+... +.|...-|-+--.++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 877666655432 2245555555555443 2345788999999998763 4588888889889999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
+.+|.++|.+..+.... +..+|-.+.++|...|++..|+++|+...+. .-.-+....+.|.+++.+.|.+.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999988542 4567899999999999999999999987664 345577889999999999999999999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHH--H---------------HhCCCHHHHHHHHHHHHHCCCC
Q 042609 468 EMKDVGVQPNVDEYNKLIQSL--C---------------LKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~~ll~~~--~---------------~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
........-...-||..+-.. + ..-+..+.|.++|.+|...+-.
T Consensus 741 ~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 741 KARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 877654333344455443221 1 0124578899999999877654
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=2.2e-10 Score=115.85 Aligned_cols=270 Identities=14% Similarity=0.087 Sum_probs=163.0
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 042609 179 ALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKM 258 (540)
Q Consensus 179 ~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 258 (540)
.+|-.+...|.. ||-++|..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~----PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGIL----PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCC----CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence 445555555544 67777888888888777777777 7777766666777777777777777777766664
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh-ccCCCC
Q 042609 259 IETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG-EARKYA 337 (540)
Q Consensus 259 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~~~~~ 337 (540)
.|-..||..|..+|...||+..-..+=+.|.. ++..+... |.......++..+.- .+.-||
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~-Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDH-GVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhh-ccCcHHHHHHhhcccCcccchh
Confidence 56777777788888777776652221111111 11112222 333333344333221 112222
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
-...+....-.|.++.+.+++..+-... ..|-.+ +++-+... ....+++....+...-.|+..+|..++.
T Consensus 142 ---a~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 142 ---AENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLK 212 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHH
Confidence 2344555556666777766665553110 111111 23222221 2223333332222211478888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
+-.-+|+++.|..++.+|++.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+-...
T Consensus 213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 888888888888888888888888887777777766 7777888888888888888888888877665544
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=2.7e-09 Score=111.12 Aligned_cols=264 Identities=11% Similarity=0.014 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hCCChhHHHHHHHHHHHC
Q 042609 196 TVEILNELIALFSK-----LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS---------RRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~---------~~~~~~~a~~~~~~m~~~ 261 (540)
+...|...+.+-.. .+..++|++.|++..+.. +-+...|..+..++. ..+++++|...+++.++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555555554311 245778888888887765 566666666655443 223467888888888776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc
Q 042609 262 GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP 340 (540)
Q Consensus 262 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 340 (540)
+ +-+...+..+...+...|++++|...|++..+.+ |+.. .+..+-..+... |++++|...+++..+..... ...
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l~P~~-~~~ 408 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMA-GQLEEALQTINECLKLDPTR-AAA 408 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC-hhh
Confidence 4 3456677777777888888888888888887765 5433 344444444444 88888888888877654331 222
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYA 419 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~ 419 (540)
+..++..+...|++++|...++++.....+-+...+..+..+|...|++++|...+.++... .|+ ....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33344456667888888888888775532224445666777788888888888888887655 333 334445555666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 420 NGGQMEEACEILNEAKKNH-SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
..| ++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666 47777777665531 12222222 44445566676666655 777754
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.1e-08 Score=91.49 Aligned_cols=259 Identities=14% Similarity=0.065 Sum_probs=202.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCC
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMY--PPQSVVAFLISSLCQED 316 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~ 316 (540)
..++-...+.+++.+-.+.....|+.-+...-+-...+.-...++++|+.+|+++.+.+.- -|..+|...+-..-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~--- 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN--- 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh---
Confidence 4455666678888888888888888666555555556677788999999999999887521 24456655553321
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
-...+.++.+-.-.-.+.-..|+..+.+-|+-.++.++|...|++..+.+. .....|+.|-.-|....+...|.+-+
T Consensus 311 --~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 --DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred --hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 112223332222222344467888888999999999999999999998653 35678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+..++-.. .|-..|-.|-++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|.+.|......|- .
T Consensus 388 RrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t 464 (559)
T KOG1155|consen 388 RRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T 464 (559)
T ss_pred HHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence 99998743 488999999999999999999999999998864 45789999999999999999999999999997763 3
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
+...+..|-..|- +.++..+|.+.|++.++
T Consensus 465 e~~~l~~LakLye-~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYE-ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 6688888888765 88899999999988765
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=5.6e-09 Score=96.17 Aligned_cols=202 Identities=13% Similarity=0.118 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
....+..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35677778888888888888888888887653 4456677777788888888888888888887764 245566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.+...|++++|.+.|++.......+.. ...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQP-----------------------------------ARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccc-----------------------------------hHHHHHHHHHHHHcCCHH
Confidence 777888888888887776653211111 112333344455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+|...+++..... +.+...+..+...+...|++++|...+++..+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus 153 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 153 KAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555432 123445555555666666666666666665554 22244444555555556666666666655554
Q ss_pred H
Q 042609 436 K 436 (540)
Q Consensus 436 ~ 436 (540)
+
T Consensus 231 ~ 231 (234)
T TIGR02521 231 K 231 (234)
T ss_pred h
Confidence 3
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=5.8e-10 Score=112.96 Aligned_cols=263 Identities=14% Similarity=0.119 Sum_probs=183.5
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETY 235 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~ 235 (540)
++.-+|..+|..||..|+.+.|- +|..|+-.... .+...++.++.+...+++.+.+. .|...||
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp----v~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP----VREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhccccc----ccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 44557999999999999998887 98888753322 46788999999988888877765 5888999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAR-EKKMYPPQSVVAFLISSLCQ 314 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~ 314 (540)
..++.+|...|++..- +..++ -...++..+...|.-.....++..+. ..+..||..+...+ ..-
T Consensus 87 t~Ll~ayr~hGDli~f-e~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill---lv~ 151 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILF-EVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL---LVL 151 (1088)
T ss_pred HHHHHHHHhccchHHH-HHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH---HHH
Confidence 9999999999988762 22222 12233445666666666666655432 22334554433222 222
Q ss_pred CCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 042609 315 EDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAME 394 (540)
Q Consensus 315 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (540)
. |.++.+++++..+......- ++..+++-+... +...+++........-.|+..+|.+++.+-.-+|+++.|..
T Consensus 152 e-glwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 152 E-GLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred H-HHHHHHHHHHhhCCcccccc---hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 3 78888888887665332211 121223333332 23344444444332225899999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 395 MLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE 458 (540)
Q Consensus 395 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (540)
++.+|+++|+..+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.+.|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999998888877777766 88888899999999999999999999888888877555
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.2e-08 Score=96.04 Aligned_cols=289 Identities=13% Similarity=0.119 Sum_probs=202.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 207 FSKLGKGKAAFEVFNKFGDYGCVANQETYY--FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 207 ~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
|.++|+++.|++++.-+.+..-+.-...-+ +++..+..-.++..|.++-+..+... .-+......-......+|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 567788888888887776543222222222 22222223346777766666554432 122222222223344579999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
+|...|++....+.......||.-+.+ +..|+.++|++.|-.+... ..-+......+.+.|--..+..+|.+++.+.
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~--e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTA--EALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccH--HHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999887644444555554433 3348999999999887543 2224566777888888999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 365 ISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 365 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
... ++.|....+.|.+.|-+.|+-.+|.+.+-+--+. ++-+..|...|..-|....-+++|+..|++..-. .|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHH
Confidence 665 6678889999999999999999998887654443 4557888888989999999999999999987654 79999
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYC-KLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 445 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
-|..+|..|. +.|++.+|+++|+..... ++-|......|++. |...| ..++.++-+++.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri-~~dlg-l~d~key~~kle 720 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI-AGDLG-LKDAKEYADKLE 720 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH-hcccc-chhHHHHHHHHH
Confidence 9999886654 689999999999998754 45577777777764 43555 356666655554
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=9.6e-09 Score=94.58 Aligned_cols=194 Identities=15% Similarity=0.042 Sum_probs=133.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+...+..+. +...+..+...|...|++++|++.|++..+.+ +.+...+..+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPD-----DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 344555777889999999999998876654 68899999999999999999999999998765 456778888899
Q ss_pred HHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCch
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGS-LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDET 318 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 318 (540)
.+...|++++|.+.++....... ......+..+...+...|++++|...|++..+.. |+ ...+..+...+... |+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~-~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLR-GQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHc-CC
Confidence 99999999999999999987532 2234566777888888999999999888877644 22 22333333333333 55
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
+++|...+++.... ...+...+..+...+...|+.++|..+++.+
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555554443 1122233333444444444444444444443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=2.8e-08 Score=103.66 Aligned_cols=268 Identities=10% Similarity=0.014 Sum_probs=181.7
Q ss_pred CCHHHHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 042609 230 ANQETYYFTIEALSR-----RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFC---------KGGKAKEAHVVYTLARE 295 (540)
Q Consensus 230 p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 295 (540)
.+...|...+++-.. .+.+++|...|++.++... -+...|..+..+|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 444555555554321 1346789999999988632 23455666655544 23458999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 296 KKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV 375 (540)
Q Consensus 296 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 375 (540)
.+ |+.......+.......|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+..+. +...
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 65 654444444443333349999999999999886532 4556788889999999999999999999886433 2223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS-PVTYHTLIRGYC 454 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 454 (540)
+..+...+...|++++|...+++..+....-+...+..+..+|...|+.++|...+.++... .|+ ....+.+...|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33445557778999999999999876632224455777788889999999999999997665 344 445566667778
Q ss_pred hcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 455 KLEEFDCALKLLNEMKD-VGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
..| ++|...++.+.+ .+-.+....+..++.++ .|+-+.+.. ++++.+.|.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~---~g~~~~~~~-~~~~~~~~~ 537 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA---HGEAIAEKM-WNKFKNEDN 537 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH---HhhhHHHHH-HHHhhccch
Confidence 777 588887777763 22334444455555543 345445544 488887753
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=2.2e-07 Score=93.89 Aligned_cols=287 Identities=15% Similarity=0.198 Sum_probs=200.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS-- 243 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~-- 243 (540)
.+...|++++|.+.++.-...- +| ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQI------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 4567799999999987655433 34 4566677788999999999999999999986 77777666665554
Q ss_pred --h--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 244 --R--RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA-KEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 244 --~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
. ....+...++|+++...- |.......+.-.+.....+ ..+..++..+..+|+++ +++. |..++.....
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~-lk~Ly~d~~K 158 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSN-LKPLYKDPEK 158 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHH-HHHHHcChhH
Confidence 1 235677888899887652 4443333332222222223 34556667777888533 2333 3334443355
Q ss_pred HHHHHHHHHHhHhc----c----------CCCCc--ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 042609 319 VKLALDMLDDFSGE----A----------RKYAI--KPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG-NAVFNSVIS 381 (540)
Q Consensus 319 ~~~a~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~ 381 (540)
.+-..+++..+... + -.|.. .++.-+...|...|++++|+...++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 55556666665432 1 11222 23466677788999999999999999886 344 667888889
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHH--HHHHHHH
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP------VTY--HTLIRGY 453 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~--~~li~~~ 453 (540)
.|-..|++.+|.+.++..+..... |-..-+-....+.++|++++|.+++....+.+..|-. -.| .-...+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654 7778888888899999999999999999887643322 122 4456788
Q ss_pred HhcCCHHHHHHHHHHHH
Q 042609 454 CKLEEFDCALKLLNEMK 470 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~ 470 (540)
.+.|++..|++.|..+.
T Consensus 316 ~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999988877665
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=6.1e-09 Score=94.22 Aligned_cols=237 Identities=11% Similarity=0.022 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 229 VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 229 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
..|-.--+.+.++|.+.|.+.+|.+.++.-++. .|-+.||..|-++|.+..+.+.|..+|.+-.+ ..|..+|+..-
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g 295 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLG 295 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhh
Confidence 344444567888899999999999999888776 57777888888999999999999999988766 35888887765
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
+.-..+.-++.++|.++|+...+.. ..++.....+...|.-.++++-|+..++++...|+. +...|+.+--+|.-.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 5544444478888888888877653 346666777777788888889999999998888875 66777777777777888
Q ss_pred hhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (540)
++-++.-|++....-..|+ ...|..|-......|++..|.+.|+-....+ .-+...+|.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 8888888887765533343 3456667777777888888888888877764 335577888888888888888888888
Q ss_pred HHHHHC
Q 042609 467 NEMKDV 472 (540)
Q Consensus 467 ~~m~~~ 472 (540)
+.....
T Consensus 453 ~~A~s~ 458 (478)
T KOG1129|consen 453 NAAKSV 458 (478)
T ss_pred HHhhhh
Confidence 877653
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=1.3e-07 Score=95.52 Aligned_cols=291 Identities=15% Similarity=0.142 Sum_probs=203.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhc---
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKV-GKIISWFCKG--- 280 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~--- 280 (540)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+...| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4457889999999999875543 33334456667888999999999999999999986 455554 4555554222
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHH
Q 042609 281 --GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAK 358 (540)
Q Consensus 281 --g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 358 (540)
.+.+....+|+++...- |.......+.-.+.....--..+..++..+...|++ .+|+.+-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25777889999887654 443333333222222212233455666667777644 45777777787777777777
Q ss_pred HHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 042609 359 TLLSKMISE----G----------PPPGNA--VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANG 421 (540)
Q Consensus 359 ~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 421 (540)
.++...... + -+|... ++.-+...|...|++++|++++++..++ .|+ +..|..-...|-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 777766532 1 134443 4466678888999999999999999988 566 56788888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHHhCC
Q 042609 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE------Y--NKLIQSLCLKAL 493 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~------~--~~ll~~~~~~~g 493 (540)
|++.+|.+.++...... .-|...-+-.+..+.++|++++|.+++....+.+..|.... | ...-.+|. +.|
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~-r~~ 319 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL-RQG 319 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH-HHh
Confidence 99999999999999876 34777777788889999999999999999887665433221 1 12223444 678
Q ss_pred CHHHHHHHHHHHHH
Q 042609 494 DWRTAEKLLEDMRL 507 (540)
Q Consensus 494 ~~~~A~~l~~~m~~ 507 (540)
++..|++.|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877766543
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1.2e-06 Score=83.59 Aligned_cols=330 Identities=13% Similarity=0.122 Sum_probs=167.3
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
+..=.+...+..|+.+|+......+. --..|...+-.=-..|++..|.++|++..+- .|+...|++.|+.-.+
T Consensus 114 ae~Emknk~vNhARNv~dRAvt~lPR-----VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAVTILPR-----VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Confidence 33444455566677777766655443 2245555555555667777777777766553 5777777777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCchHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ---EDETVKL 321 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~ 321 (540)
-+.++.|..+|+..+-. .|+..+|--....=.++|.+..|..+|+...+.- .+...-..++.++.. ....++.
T Consensus 187 ykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL--GDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred hhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766543 4666666666666666666666666666554321 111111111111111 0111222
Q ss_pred HHHHHHHhHh-------------------------------------------ccCCCCcccHHHHHHHHHcCCCHHHHH
Q 042609 322 ALDMLDDFSG-------------------------------------------EARKYAIKPFSSVIRSLCRMKDVHGAK 358 (540)
Q Consensus 322 a~~~~~~m~~-------------------------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~ 358 (540)
|.-+|+-... .....|-.+|--.+..-...|+.+...
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHH
Confidence 2222211110 001223444555555555566666666
Q ss_pred HHHHHHHHCCCCCCHH-------HHHHHHHH---HHhcCChhHHHHHHHHHHHC--------------------------
Q 042609 359 TLLSKMISEGPPPGNA-------VFNSVISA---YSKAGDMTPAMEMLKLMRSR-------------------------- 402 (540)
Q Consensus 359 ~~~~~m~~~g~~p~~~-------~~~~li~~---~~~~g~~~~A~~~~~~m~~~-------------------------- 402 (540)
++|++.... ++|-.. .|.-+=-+ =....+.+.+.++|+...+.
T Consensus 343 e~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 343 ETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccH
Confidence 666666544 333111 11111111 11234444444554444331
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 403 ----------GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 403 ----------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
|..|-..+|...|..=.+.++++.+..++++.++-+ +-|..+|......-...|+.+.|..+|.-.+..
T Consensus 422 ~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 422 GARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 334555555555555555566666666666666554 234455555555555666666666666665532
Q ss_pred C-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 473 G-VQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 473 g-~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
. +.-....|-+.|.- -...|.++.|..+++++++.
T Consensus 501 p~ldmpellwkaYIdF-Ei~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDF-EIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cccccHHHHHHHhhhh-hhhcchHHHHHHHHHHHHHh
Confidence 1 11122333344432 22556666777777666654
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=1.4e-08 Score=101.29 Aligned_cols=243 Identities=19% Similarity=0.206 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CC-CCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHC-----CC--
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDY-----GC-VANQE-TYYFTIEALSRRKIFDWAWSVCEKMIET-----GS-- 263 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-- 263 (540)
.+...|...|...|++++|+.+++...+. |. -|... ..+.+...|...+++++|..+|+++... |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555889999999999999999887653 20 12222 3344666777888888888888887653 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc-ccHH
Q 042609 264 LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI-KPFS 342 (540)
Q Consensus 264 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~ 342 (540)
+.-..+++.|..+|.+.|++++|...+++..+ +++..... ..+.+ ..++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----------------------------I~~~~~~~-~~~~v~~~l~ 329 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE-----------------------------IYEKLLGA-SHPEVAAQLS 329 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------HHHHhhcc-ChHHHHHHHH
Confidence 11234566677778888888888877766543 11110000 00001 1144
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCC-CH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISE---GPPPG----NAVFNSVISAYSKAGDMTPAMEMLKLMRSR-----G-LKP-DV 408 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~ 408 (540)
.+...|+..+++++|..+++...+. -+.++ ..+++.|-..|.+.|++++|+++|++.... | ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5555666667777776666654321 11122 347888888888899999999888876543 1 112 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKN----HS-RLSP-VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
..++.|-..|.+.++.++|.++|.+.... |. .|+. .+|..|...|...|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 56777778888888888888888765432 21 2332 678888888888888888888877665
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=8e-07 Score=85.10 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=158.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (540)
+.-+|+.-.|..-|+..+.....+.. .|-.+-..|... .+.++....|+.....+.. +..+|..-...+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~-~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADE-NQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhh-hccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 45577888888888888775532222 244444455555 7788888888887765433 55667777777778888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
|..=|++.+...+ -+...|--+..+..+.+++++++..|++.+++ ++--...|+.....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999998887532 25667777777777888999999999998887 333467888888999999999999999998887
Q ss_pred CCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 437 NHSR-------LSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 437 ~g~~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
.... +.+....+++..-.+ +++..|.+++.+..+.+.. ....|-.|-..-. +.|+.++|+++|++-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~l-Q~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFEL-QRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 5311 222333333333333 8899999999999876432 3455666665544 78899999999997654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=2.5e-08 Score=90.37 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 347 (540)
.--+-+.++|.+.|.+.+|++.|+...+.. |-..||..+-..|-+- .+...|+.++.+-.+. .+.++.-..-+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRI-DQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 334578889999999999999999887754 6677888888888777 8999999999887654 23344334556777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
+-..++.++|.++++...+. .+.++....++...|.-.++.+-|+.++.++.+-|+. +...|+.+--+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 78889999999999999876 3457777888888899999999999999999999987 888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSP--VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+.-|.+....--.|+. ..|..|-...+..|++.-|.+.|+-.+..+-. +...+|.|- .+..+.|++++|..+++..
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLa-vL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLA-VLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHH-HHHhhcCchHHHHHHHHHh
Confidence 9999998876444543 57888888888999999999999998866432 456677665 4556999999999999988
Q ss_pred HHCCC
Q 042609 506 RLKGL 510 (540)
Q Consensus 506 ~~~g~ 510 (540)
.....
T Consensus 456 ~s~~P 460 (478)
T KOG1129|consen 456 KSVMP 460 (478)
T ss_pred hhhCc
Confidence 76543
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1e-06 Score=85.86 Aligned_cols=284 Identities=13% Similarity=0.046 Sum_probs=221.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
++...-.-..-+...+++++..++++...+.. ++....+..-|.++...|+..+-.-+=.+|++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 66667777777888999999999999998764 677777777788888999888777777777775 4556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (540)
.|.-.|+..+|.+.|.+....+ |. ...|-..-..+... |..++|...+....+.-.. .-..+--+.--|.+.+..
T Consensus 321 YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence 9999999999999999876543 22 34566666666665 8899999888776543111 122244566678889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHhcCCHHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----G-LK-PDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~-p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
+.|.+.|.+.... .+-|....+-+--.....+.+.+|..+|+..... + -. -...+++.|-.+|.+.++.++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998775 3446777777777777889999999999887632 1 11 24567899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
..+++.+... +-+..+|.++.-.|...|+++.|.+.|++.+- +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998874 56889999999999999999999999999884 4788888888876543
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=7.4e-06 Score=78.32 Aligned_cols=324 Identities=15% Similarity=0.071 Sum_probs=204.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
.+++...|+.+|+........ +...|-.-+..=.++.+++.|..++++....=...|. .|---+..--..|++.
T Consensus 85 sq~e~~RARSv~ERALdvd~r-----~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-----NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccH
Confidence 346777899999998876554 8899999999999999999999999998875322233 3334444555679999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
.|.++|+.-.+- .|+...|++.|+.=.+...++.|..+|+...-- -|+..+|.-...-=-+. |....+..+|...
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~-g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH-GNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence 999999998875 799999999999999999999999999998763 38888876655444443 7788887777765
Q ss_pred HhccCC--CCcccHHHHHHHHHcCCCHHHHHHH--------------------------------------------HHH
Q 042609 330 SGEARK--YAIKPFSSVIRSLCRMKDVHGAKTL--------------------------------------------LSK 363 (540)
Q Consensus 330 ~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~--------------------------------------------~~~ 363 (540)
.+.-.. .+...|.+...-=.++..++.|.-+ ++.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 432100 0011111111111112222222222 222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcCCHHHHHHHHHH
Q 042609 364 MISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY-------TYTGLMSGY---ANGGQMEEACEILNE 433 (540)
Q Consensus 364 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~A~~~~~~ 433 (540)
++.. -+-|-.+|--.+..-...|+.+...++|+..... ++|-.. .|--+=-++ ....+++.+.++++.
T Consensus 314 ~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 314 EVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222 2346777877788888889999999999988765 333211 111111111 124455555555544
Q ss_pred HHHC------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 434 AKKN------------------------------------HSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 434 m~~~------------------------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
.++. |.-|-..+|...|..-.+.++++.+..+|++.++.+.. |
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~ 470 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-N 470 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-h
Confidence 4331 22455566666666666666777777777776665422 3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 478 VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 478 ~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..+|.... .+-...|+++.|..+|+-.+..
T Consensus 471 c~~W~kya-ElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 471 CYAWSKYA-ELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred hHHHHHHH-HHHHHhhhHHHHHHHHHHHhcC
Confidence 44444433 2334566777777777666543
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.00 E-value=2.9e-07 Score=91.96 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=121.9
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC--
Q 042609 339 KPFSSVIRSLCRMKDVHGAKTLLSKMISE-----GP-PPGNA-VFNSVISAYSKAGDMTPAMEMLKLMRSR---GLKP-- 406 (540)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p-- 406 (540)
.+++.|-.+|.+.|++++|...+++..+. |. .|.+. -++.++..|+..+++++|..+++...+. -..+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 44667777788888888877777665421 22 23333 3566777889999999999999876432 1122
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC
Q 042609 407 --DVYTYTGLMSGYANGGQMEEACEILNEAKKN----HS--RLS-PVTYHTLIRGYCKLEEFDCALKLLNEMK----DVG 473 (540)
Q Consensus 407 --~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g 473 (540)
-..+++.|-..|...|++++|.++++.++.. +. .+. ...++.|...|.+.+.+++|.++|.+.. ..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 2467999999999999999999999988753 11 222 3577889999999999999999998754 333
Q ss_pred CC-C-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 474 VQ-P-NVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 474 ~~-p-~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.. | ...+|..|...|- +.|+++.|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~-~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYR-AQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHH-HcccHHHHHHHHHHHH
Confidence 21 2 3467788887775 8999999999998875
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.1e-06 Score=78.68 Aligned_cols=310 Identities=12% Similarity=0.019 Sum_probs=212.2
Q ss_pred HhcCChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 042609 208 SKLGKGKAAFEVFNKFGD-YGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEK-VGKIISWFCKGGKAKE 285 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~ 285 (540)
+..++...|...+-.+.. .-++-|+.....+.+.+...|+.++|...|++....+ |+..+ .....-.+.+.|+.++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhh
Confidence 345555556555554433 3356678888889999999999999999999887653 43322 2222334567788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI 365 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (540)
...+...+.... .-....|-.-...++.. ++++.|+.+-++-.+.+. .+...|-.=...+...+++++|.-.|+..+
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~-K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDE-KKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhh-hhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 777777665433 11222333333333444 788888888877765432 244445555567788999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 366 SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLM-SGYA-NGGQMEEACEILNEAKKNHSRLSP 443 (540)
Q Consensus 366 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~ 443 (540)
... +-+...|..|+..|.-.|++.+|.-+-++..+. +.-+..+.+.+- ..|. ....-++|..+++.-.+. .|+-
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y 437 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIY 437 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCcc
Confidence 652 357889999999999999999998877665543 223455555442 2222 233457899998887765 4553
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 042609 444 -VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRA 522 (540)
Q Consensus 444 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a 522 (540)
...+.+...+...|..+.+..++++.... .||....+.|-+.+. ....+.+|+..|......+.+ .-.-+++
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~-A~Ne~Q~am~~y~~ALr~dP~----~~~sl~G 510 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR-AQNEPQKAMEYYYKALRQDPK----SKRTLRG 510 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCcc----chHHHHH
Confidence 56778888999999999999999998864 688888888888776 666899999999988765332 3455666
Q ss_pred HHHHHHhhhhc
Q 042609 523 VKELEEDAIEN 533 (540)
Q Consensus 523 ~~~l~~~~~~~ 533 (540)
+..|++..-++
T Consensus 511 l~~lEK~~~~~ 521 (564)
T KOG1174|consen 511 LRLLEKSDDES 521 (564)
T ss_pred HHHHHhccCCC
Confidence 77777765543
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=6.1e-06 Score=81.58 Aligned_cols=308 Identities=11% Similarity=-0.050 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH--
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYG-CVANQET-YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK-- 272 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-- 272 (540)
...|..+...+...|+.+.+...+.+..+.. ..++... .......+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4556666666666777777666666554321 1122211 2222334556778888888888777652 233333332
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcC
Q 042609 273 -IISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRM 351 (540)
Q Consensus 273 -li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 351 (540)
+.......+..+.+.+.++. .....|+......++.......|++++|...+++..+... .+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 11111223444555555443 1122343333333333333334788888888888776542 2345567777788888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 042609 352 KDVHGAKTLLSKMISEGP-PPGN--AVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPDVYTY-T--GLMSGYANGGQM 424 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~ 424 (540)
|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888775432 1232 2355677778888888888888888754322 1122111 1 233333344433
Q ss_pred HHHHHH--H-HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHhCC
Q 042609 425 EEACEI--L-NEAKKNH-SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ-------PNVDEYNKLIQSLCLKAL 493 (540)
Q Consensus 425 ~~A~~~--~-~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------p~~~~~~~ll~~~~~~~g 493 (540)
..+.+. + ....... .............++...|+.++|..+++.+...... ........+........|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 332222 1 1111110 0111222235667778888999999999888742211 111111222222223678
Q ss_pred CHHHHHHHHHHHHHC
Q 042609 494 DWRTAEKLLEDMRLK 508 (540)
Q Consensus 494 ~~~~A~~l~~~m~~~ 508 (540)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877654
No 69
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.3e-07 Score=89.18 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=150.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
+.+.-.|++..++.-.+ .....-..+......+.+++...|+++.+ ..++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886555 32222123445566677888888886643 34443333 566655555554443334444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
.+..-+++.......+...++..+...+....|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454444443333333344455554444444458888888877542 24556667788888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 365 ISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR 440 (540)
Q Consensus 365 ~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (540)
.+. ..|. +...+..++.. ...+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 764 3333 33334444332 34688888888887665 45677778888888888888888888888877654 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 042609 441 LSPVTYHTLIRGYCKLEEF-DCALKLLNEMKDV 472 (540)
Q Consensus 441 p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 472 (540)
-++.+...++......|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3556666677777777776 6677777777753
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6.7e-06 Score=78.95 Aligned_cols=339 Identities=14% Similarity=0.072 Sum_probs=208.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-QETYYFT 238 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-~~t~~~l 238 (540)
+....+-+.+.+.+++|++.+++..+. .|| ++-|.....+|...|+++++++--.+.++. .|+ +-.+.--
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RR 189 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRR 189 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHH
Confidence 444566777888899999999887763 267 778888888899999999998888887764 354 3345555
Q ss_pred HHHHHhCCChhHHHHHH----------------------HH---------HHHCC--CCCCHHHHHHHHHHHHh------
Q 042609 239 IEALSRRKIFDWAWSVC----------------------EK---------MIETG--SLPDSEKVGKIISWFCK------ 279 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~----------------------~~---------m~~~g--~~p~~~~~~~li~~~~~------ 279 (540)
.+++-..|++++|+.=. .+ |.+.+ +.|.....++....+..
T Consensus 190 A~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 66777778877654211 10 00001 22443333333332211
Q ss_pred --cC--------------------CHHHHHHHHHHHHH-cCCCCCHH---------HHHHHHHH-HHhCCchHHHHHHHH
Q 042609 280 --GG--------------------KAKEAHVVYTLARE-KKMYPPQS---------VVAFLISS-LCQEDETVKLALDML 326 (540)
Q Consensus 280 --~g--------------------~~~~A~~~~~~m~~-~~~~p~~~---------~~~~ll~~-~~~~~~~~~~a~~~~ 326 (540)
.+ .+..|...+.+-.. ....++.. .-..++.+ +.--.|+...|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 00 01111111111000 00011111 00111111 111126666677777
Q ss_pred HHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042609 327 DDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP 406 (540)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 406 (540)
+........++ ..|--+..+|....+.++....|+...+.+.. |..+|..-.+++.-.+++++|..=|++.+.....
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 76665543322 22777777888888889999999988876432 5556666666777778899999999888876322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH-
Q 042609 407 DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-----VQPNVDE- 480 (540)
Q Consensus 407 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~- 480 (540)
++..|-.+-.+..+.+++++++..|++.++. ++-.+..|+.....+...+++++|.+.|+..++.. +..+...
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 4566666666666888999999999999886 45566889999999999999999999999887532 1112221
Q ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 481 -YNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 481 -~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
--.++. + +-.+++..|.+++.+..+...+-+
T Consensus 506 V~Ka~l~-~-qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 506 VHKALLV-L-QWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred hhhhHhh-h-chhhhHHHHHHHHHHHHccCchHH
Confidence 222221 1 234789999999999887654433
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=2.9e-06 Score=81.08 Aligned_cols=220 Identities=14% Similarity=0.083 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 042609 173 GKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAW 252 (540)
Q Consensus 173 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (540)
..+.+..-+.++........ .-....|..+...|...|+.++|+..|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555554222100 0124568888888889999999999999888764 456788888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 253 SVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 253 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
..|+..++.. +-+..++..+..++...|++++|.+.|+...+.+ |+.... .+...+....++.++|...|.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999988763 2346677778888888899999999998888755 443321 11111223336788888888664432
Q ss_pred cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042609 333 ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-PP-----PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG 403 (540)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (540)
. .++...+ .+ .....|+...+ ..+..+.+.. .. .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2222211 22 22234444433 2444443210 00 122456666666777777777777777766553
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.86 E-value=1.1e-06 Score=83.88 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=139.5
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+...|+.++|...|+...+..++ +...|+.+...|...|++++|++.|++..+.. +-+..+|..+..++...
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPD-----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 3556779999999999999988775 88999999999999999999999999998764 34577888888899999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|++++|.+.++...+.. |+..........+...++.++|...|++..... .++ .|...+..+.. |+..++ +.
T Consensus 146 g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~--~~~~~~~~~~l--g~~~~~-~~ 217 (296)
T PRK11189 146 GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKE--QWGWNIVEFYL--GKISEE-TL 217 (296)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Ccc--ccHHHHHHHHc--cCCCHH-HH
Confidence 99999999999998864 443222222233456788999999997755432 232 22222322222 344333 24
Q ss_pred HHHhHhc---cCC---CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 326 LDDFSGE---ARK---YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF 376 (540)
Q Consensus 326 ~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 376 (540)
+..+... ... ....+|..+...+.+.|++++|...|++....++ ||-+-+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~ 273 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEH 273 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHH
Confidence 4444321 111 1234688899999999999999999999988653 344433
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=2.2e-05 Score=77.55 Aligned_cols=292 Identities=12% Similarity=0.001 Sum_probs=176.3
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----h
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS----R 244 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~----~ 244 (540)
..++.+.+...+....+..+.. ++ ..........+...|++++|.+++++..+.. +.|...+.. ...+. .
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 18 LGGERPAAAAKAAAAAQALAAR---ATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF 92 (355)
T ss_pred hcCCcchHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc
Confidence 3456666666666655544321 12 2233334445678899999999999988753 445545542 22222 2
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLA 322 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a 322 (540)
.+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+.. |+.. .+..+-..+... |++++|
T Consensus 93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~-g~~~eA 167 (355)
T cd05804 93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQ-GRFKEG 167 (355)
T ss_pred ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHc-CCHHHH
Confidence 4555555555554 1122333 3445566778899999999999999999865 5544 444454555555 999999
Q ss_pred HHHHHHhHhccCC-CCc--ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH
Q 042609 323 LDMLDDFSGEARK-YAI--KPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PPGNAVF-N--SVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 323 ~~~~~~m~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~A~~~ 395 (540)
...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 9999988765322 222 2355688889999999999999999864322 1222211 1 233334445544443333
Q ss_pred --HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhcCCHHHHH
Q 042609 396 --LKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR---L-----SPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 396 --~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~---p-----~~~~~~~li~~~~~~g~~~~A~ 463 (540)
+........ ............++...|+.++|..++..+...... - .........-++...|+.++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 211111111 111222235666778899999999999998764322 0 1122233334566899999999
Q ss_pred HHHHHHHH
Q 042609 464 KLLNEMKD 471 (540)
Q Consensus 464 ~~~~~m~~ 471 (540)
+.+.+...
T Consensus 328 ~~L~~al~ 335 (355)
T cd05804 328 ELLGPVRD 335 (355)
T ss_pred HHHHHHHH
Confidence 99988774
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=8.1e-05 Score=73.43 Aligned_cols=137 Identities=18% Similarity=0.097 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILN--------EAKKNHSRLSPVTYHTLIRGYCKLEEFD 460 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~ 460 (540)
..+|.+++...-+....-.....-.++......|+++.|.+++. .+.+.+..| .+..+++..|.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCc
Confidence 44555555554444222223455555666777889999998888 555554434 45556777777877777
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHHH
Q 042609 461 CALKLLNEMKDV--GVQPNVDEYNKLIQ---SLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELEE 528 (540)
Q Consensus 461 ~A~~~~~~m~~~--g~~p~~~~~~~ll~---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~~ 528 (540)
-|..++.+.... .-.+.....++++. .+-.+.|.-++|..+++++.+.+. +|..+. .++.+++.++-
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARLDP 507 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcCH
Confidence 777777665421 00122223333332 334477999999999999988643 344444 78888877653
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.7e-06 Score=80.89 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=209.4
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
.-+...+++++..++++.+.+..+ +....+-.-|..+...|+..+-..+=.+|.+.- |-.+.+|-.+.--|.-.
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dp-----fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDP-----FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCC-----CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 344455788899999998888766 477888888889999999999888888888763 66788999999888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|+..+|++.|.+....+. .=...|-.+...|+-.|.-+.|...+...-+.-..........-+ .|.+. +..+.|.++
T Consensus 326 ~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm-ey~~t-~n~kLAe~F 402 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM-EYMRT-NNLKLAEKF 402 (611)
T ss_pred cCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH-HHHHh-ccHHHHHHH
Confidence 999999999998765431 123478888999999999999998887665422111112222111 22223 789999999
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE--GPPP----GNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
|.+..... +.|....+-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|-.+|.+.+++++|+..+++.
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99877642 345666777777777788999999999887622 0111 2346788899999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
..... -|..++.++.-.|...|+++.|.+.|.+.... .|+-.+-..++..+
T Consensus 482 L~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 482 LLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 87743 38899999999999999999999999998875 68877766666644
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.81 E-value=0.00015 Score=72.16 Aligned_cols=360 Identities=12% Similarity=0.056 Sum_probs=216.0
Q ss_pred cchhhhHhhcc---cccchHHHHHHHHHhhcChhhHHHHHHHHHHhccc--CCCCCCHHHHHHHHHHHHhcCChH---HH
Q 042609 145 LGENLVCFFKW---VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEK--EKGVLTVEILNELIALFSKLGKGK---AA 216 (540)
Q Consensus 145 ~~~~ll~~~~w---~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~---~A 216 (540)
.....++.|+- +.+...+..|..+++.++.++|.+.+..+...... ..+.-+-..|..+-...+++-+.- ..
T Consensus 153 lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 153 LPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 33455555543 66777888888899999998888877665432211 112235677888777777654433 33
Q ss_pred HHHHHHHhhCCCCCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------
Q 042609 217 FEVFNKFGDYGCVANQ--ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG-------------- 280 (540)
Q Consensus 217 ~~~f~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------------- 280 (540)
..+++.+... -+|. ..|++|.+-|.+.|.++.|.++|++.+..- .+..-+..+.+.|+.-
T Consensus 233 daiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~ 308 (835)
T KOG2047|consen 233 DAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADE 308 (835)
T ss_pred HHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455555443 2443 568999999999999999999999887752 3333444444554431
Q ss_pred --C------CHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc---
Q 042609 281 --G------KAKEAHVVYTLAREKKM-----------YPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI--- 338 (540)
Q Consensus 281 --g------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--- 338 (540)
| +++-...-|+.+..+.. .-+...|..-+.. .. |+..+....|.+.... +.|-.
T Consensus 309 ~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e-~~~~~~i~tyteAv~~-vdP~ka~G 384 (835)
T KOG2047|consen 309 ESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YE-GNAAEQINTYTEAVKT-VDPKKAVG 384 (835)
T ss_pred cccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hc-CChHHHHHHHHHHHHc-cCcccCCC
Confidence 1 22333444554444321 1112223222221 12 5666667777766543 22221
Q ss_pred ---ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----------
Q 042609 339 ---KPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG---NAVFNSVISAYSKAGDMTPAMEMLKLMRSR---------- 402 (540)
Q Consensus 339 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 402 (540)
..|..+...|-..|+++.|..+|++..+...+.- ..+|..-.++=.+..+++.|+++++....-
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 2388888999999999999999999876533211 234555555555677888888887765422
Q ss_pred -CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 403 -GLKP------DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 403 -g~~p------~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
+.++ +...|...+..--..|-++....+++++++..+ .++..-......+-.+.-++++.++|++-+..=-.
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1111 122344444444456788888889999888764 23433333333444566788888888876543223
Q ss_pred CCH-HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 476 PNV-DEYNKLIQSLCL--KALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 476 p~~-~~~~~ll~~~~~--~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
|+. ..|+..+.-+.. .+...+.|..+|++.++ |..|..
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 443 345555554443 24568889999999988 666543
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.9e-05 Score=74.33 Aligned_cols=290 Identities=9% Similarity=-0.062 Sum_probs=202.8
Q ss_pred HHHhhcChhhHHHHHHHH--HHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHH
Q 042609 167 AICSSVGKKEVYALWDIV--KEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQET-YYFTIEALS 243 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t-~~~ll~~~~ 243 (540)
+.|-.++...|...|-.+ ...-+. |+.....+...+...|+.++|+..|++....+ |+..+ ...-.-.+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~-----NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRC-----NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCc-----cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHH
Confidence 444445544555444333 333332 89999999999999999999999999987643 43221 111223345
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
+.|+++....+...+.... ..+...|-.-........++..|..+-++..+.+ |...--..|=+.+....++.++|.
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHH
Confidence 6778887777777665432 1233334444445556778889988888776644 444444444444455559999999
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCChhHHHHHHHHHHH
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI-SAYSK-AGDMTPAMEMLKLMRS 401 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~ 401 (540)
-.|+...... +.+...|..++..|...|++.+|...-+...+. ++-+..+.+.+- ..+.- -.--++|..+++.-.+
T Consensus 355 IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 355 IAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 9999876542 346788999999999999999998887776654 344555555442 22222 2235788888887665
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 402 RGLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 402 ~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
. .|+ ....+.+...|...|..+++..++++.... .||....+.|.+.+...+.+.+|++.|......
T Consensus 433 ~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 433 I--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred c--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5 555 456677778888999999999999998886 689999999999999999999999999988865
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=8.6e-06 Score=70.93 Aligned_cols=201 Identities=13% Similarity=0.074 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
.+.-.|.-+|...|++..|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++.++.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 345566667888888888888888887765 4456677777778888888888888888877763 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
|..|++++|.+.|++....-..+.. ..+|..+.-+..+.|+.+.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~-----------------------------------s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEP-----------------------------------SDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCc-----------------------------------chhhhhhHHHHhhcCCchhH
Confidence 7778888887777776653221111 22344444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
...|++..+.... ...+...+.....+.|++-.|..+++.....+. ++..+.-..|+.-...|+.+.+-+.=.++.+.
T Consensus 159 ~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 159 EEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555544221 233444555555566666666666655555543 55555555555555566655555555554443
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=5.8e-05 Score=75.18 Aligned_cols=190 Identities=11% Similarity=-0.020 Sum_probs=115.7
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI 247 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (540)
++..|+.++|......-.....+ +.++|..+.-.+....++++|++.|+.....+ +-|...|.-+--.-++.++
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-----S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-----SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-----cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence 35567778888777665554444 77889988888888889999999998887765 4566666666666666777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH------HhCCchHH
Q 042609 248 FDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQSVVAFLISSL------CQEDETVK 320 (540)
Q Consensus 248 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~------~~~~~~~~ 320 (540)
++.....-..+.+.. +.....|..+.-++.-.|+...|..+.++..+... .|+...+.-...-+ .+. |..+
T Consensus 125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA-GSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc-ccHH
Confidence 776666666666542 23445566666777777777777777777765442 34444443322222 222 5555
Q ss_pred HHHHHHHHhHhccCCCCccc-HHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042609 321 LALDMLDDFSGEARKYAIKP-FSSVIRSLCRMKDVHGAKTLLSKMISE 367 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (540)
+|++.+..-... ..|... -..-...+.+.+++++|..++..+...
T Consensus 203 ~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 203 KALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 555555443221 011111 122334455666666666666666653
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=7.9e-06 Score=71.14 Aligned_cols=193 Identities=14% Similarity=0.009 Sum_probs=151.8
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
|.-.+...|+...|..-+++..+..+. +..+|..+...|-+.|..+.|.+.|++..+.. +-+....|.--..+|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 334778899999999999999998886 88999999999999999999999999998865 556778888888999
Q ss_pred hCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCchHHH
Q 042609 244 RRKIFDWAWSVCEKMIETG-SLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~ 321 (540)
..|++++|.+.|++....- +.--..+|..+.-+..+.|+.+.|...|++..+.+ |+. .....+....+.. |++..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~-~~y~~ 191 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKA-GDYAP 191 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhc-ccchH
Confidence 9999999999999998763 22235678888888999999999999999988765 332 3334455555555 77888
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
|..+++.....+. ++..+.-..|..-...|+.+.+.+.=.++..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8887777776654 5566666666666677777776666555554
No 81
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.6e-08 Score=61.00 Aligned_cols=32 Identities=34% Similarity=0.637 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 368 GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 368 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.9e-08 Score=60.66 Aligned_cols=29 Identities=48% Similarity=0.788 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
.||..||++||.+||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.2e-05 Score=71.33 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=162.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------------CCCCCH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY--------------GCVANQ 232 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------------g~~p~~ 232 (540)
.+.+.|++++|..++..+.+... ++...|-.|.-.+.-.|.+.+|..+-.+..+. |-....
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~-----~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDD-----APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCC-----CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 34566888888888887766322 46677777777777778888877766553221 000001
Q ss_pred HHHH-----------HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 233 ETYY-----------FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI-ISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 233 ~t~~-----------~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
.++. ++....--.-++++|+++|...+..+ |+-...|.- .-+|.+..-++-+.++++-..+.- |
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--p 216 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--P 216 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--C
Confidence 1111 11111112235667777777776542 343344432 235666666777777666555432 4
Q ss_pred CHHH-HHHHHHHHHhC-CchHHHHHHHHHHhHhccC--------------------------CCC-----cccHHHHHHH
Q 042609 301 PQSV-VAFLISSLCQE-DETVKLALDMLDDFSGEAR--------------------------KYA-----IKPFSSVIRS 347 (540)
Q Consensus 301 ~~~~-~~~ll~~~~~~-~~~~~~a~~~~~~m~~~~~--------------------------~~~-----~~~~~~li~~ 347 (540)
|... .|......++. +|+..++ -.+++...+- -|. ...-..++-.
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~--E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAED--EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHH--HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheee
Confidence 3322 22222221111 1221111 1111111100 000 0112233444
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H----HhcCChhHHHHHHHHHHHCCCCC----------------
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA-Y----SKAGDMTPAMEMLKLMRSRGLKP---------------- 406 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~----~~~g~~~~A~~~~~~m~~~g~~p---------------- 406 (540)
|.+.+++.+|..+.+++.- ..|-......++.+ + .....+.-|.+.|+..-+.+..-
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 5677888888777666531 12222222222211 1 11112344444444433332211
Q ss_pred ----CHHHH---------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 042609 407 ----DVYTY---------------TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY-HTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 407 ----~~~t~---------------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 466 (540)
|+.+| -.+..+++..|++.+|.++|-++....++ |..+| ..|.++|.+.+..+-|+.++
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 11112 22445556667777888887766654444 34444 44557777888887777665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 467 NEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 467 ~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
-++-. .-+..+...+|..-|-+.+.+--|-+-|+.+......|.
T Consensus 452 lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 452 LKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 54432 334555666666556577777777777777776655543
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.6e-05 Score=71.67 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=92.4
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF- 237 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~- 237 (540)
.-++..+-.+.+..++++|++++..-.+..++ +......|...|-...++..|-..++++-.. -|...-|..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-----SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 34556666666666666666666655554443 5566666666666666666666666666543 244333332
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW--FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 315 (540)
-...+-+.+.+..|.++...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+..-.-.++.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 123344555666666666655432 211111111111 123445555555555433211 111111111111222
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG 368 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 368 (540)
|+++.|.+-|+...+.+.--....|+..+..| +.|+.+.|++...++++.|
T Consensus 158 -gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 158 -GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERG 208 (459)
T ss_pred -ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhh
Confidence 55666666665555433222334454433332 3455556666655555554
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.66 E-value=0.00048 Score=68.75 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=155.6
Q ss_pred CChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCC
Q 042609 246 KIFDWAWSVCEKMIETGSLPD------SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ---SVVAFLISSLCQED 316 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~ 316 (540)
|+..+-..+|.+.++. +.|. ...|..+.+.|-..|+++.|..+|++..+-...--. .+|..--..=.+.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh- 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH- 438 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh-
Confidence 4555666667766654 2232 345778888899999999999999987765432221 2222222222233
Q ss_pred chHHHHHHHHHHhHhccCCC-----------------CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKY-----------------AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSV 379 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 379 (540)
.+++.|+++++........+ +...|...++.--..|-++....+++++.+..+..-....|-
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny- 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY- 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-
Confidence 66777887776654321111 122266666666677888888889998887655422222221
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRGLKPDV-YTYTGLMSGYAN---GGQMEEACEILNEAKKNHSRLSPV--TYHTLIRGY 453 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~ 453 (540)
...+-.+.-++++.+++++-...--.|++ ..|+..+.-+.+ ...++.|..+|++..+ |++|... .|-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 11233455677888777665444334554 356666665543 3478999999999998 6776542 233333333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 454 CKLEEFDCALKLLNEMKDVGVQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
-+.|....|+.++++.... +.+. ...||..|.-...--| ...-..++++.++. -||....
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~--Lp~~~~r 658 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIES--LPDSKAR 658 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHh--CChHHHH
Confidence 4578888899999886643 3322 2456666655443333 34455666666664 4554444
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.64 E-value=0.00044 Score=69.15 Aligned_cols=325 Identities=14% Similarity=0.060 Sum_probs=213.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..+++....+..+.+.+..+. ...+.....-.+...|+-++|....+.-...+ ..+.+.|+.+.-.+-...+++
T Consensus 19 E~kQYkkgLK~~~~iL~k~~e-----HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPE-----HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCc-----cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHH
Confidence 346677777777777764443 33455555555667899999999998887754 467788998888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
+|.+.|....+.+ +.|...+.-|.-.-.+.|+++.....-..+.+.. ......|..+..+.... |+...|..++++.
T Consensus 93 eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef 169 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL-GEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999875 3566777766666777888888877776666543 22345566666666665 9999999999998
Q ss_pred Hhcc-CCCCcccHHHHH------HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 330 SGEA-RKYAIKPFSSVI------RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 330 ~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
.+.. ..|+...|.-.. ....+.|..+.|.+.+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 8765 245555543332 3345678888888877665433 2223333345566788899999999999999887
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHH-H----------------------------------HHHHHHHCCC-------
Q 042609 403 GLKPDVYTYTGLMSG-YANGGQMEEAC-E----------------------------------ILNEAKKNHS------- 439 (540)
Q Consensus 403 g~~p~~~t~~~ll~~-~~~~g~~~~A~-~----------------------------------~~~~m~~~g~------- 439 (540)
.||..-|...+.. +.+-.+.-++. . ++..+.+.|+
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 5676665544332 22111111111 1 1122222221
Q ss_pred ---------------------------------------CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 440 ---------------------------------------RLSPV--TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 440 ---------------------------------------~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
+|.+. ++.-++..|-+.|+++.|...++..++. .|+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchH
Confidence 23333 3445667788888888888888888865 5665
Q ss_pred HHHHHHH-HHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 479 DEYNKLI-QSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 479 ~~~~~ll-~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.-.-.+= +.++ +.|++++|..++++..+..
T Consensus 405 iEly~~KaRI~k-H~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 405 IELYLVKARIFK-HAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHHHH-hcCChHHHHHHHHHHHhcc
Confidence 4433222 3333 7888888888888877654
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00029 Score=78.93 Aligned_cols=307 Identities=11% Similarity=-0.041 Sum_probs=188.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCC------CCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----H
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGC------VANQ--ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDS----E 268 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~------~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~ 268 (540)
......+...|++++|..++......-- .+.. .....+-..+...|+++.|...++.....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999987754210 1111 12222334456789999999999988763211221 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCH--HHHHHHHHHHHhCCchHHHHHHHHHHhHhc----cCC--C-
Q 042609 269 KVGKIISWFCKGGKAKEAHVVYTLAREKKM---YPPQ--SVVAFLISSLCQEDETVKLALDMLDDFSGE----ARK--Y- 336 (540)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----~~~--~- 336 (540)
..+.+...+...|++++|...+++.....- .+.. .....+-..+... |++++|...+++.... +.. +
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccH
Confidence 445666778889999999999988764211 1111 1222233334444 9999999988876542 111 0
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG--PPP--GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPDVYTY 411 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~ 411 (540)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|.+.++....... ......+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 11223445556677899999999998875431 112 233445566678889999999999888754210 0111111
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-
Q 042609 412 -----TGLMSGYANGGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKD----VGVQPNV- 478 (540)
Q Consensus 412 -----~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~- 478 (540)
...+..+...|+.+.|...+............ ..+..+..++...|+.++|..++++... .|..++.
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11224455688999999998776543211111 1245677788899999999999998763 2333322
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 479 DEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.+...+-.++ .+.|+.++|...+.+..+..
T Consensus 732 ~~~~~la~a~-~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLY-WQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHh
Confidence 2333333344 48899999999999987654
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=4.9e-06 Score=78.47 Aligned_cols=251 Identities=16% Similarity=0.098 Sum_probs=161.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
+-+.-.|++..++.-.+ .....-..+.....-+.++|...|+.+.+. .++.... .|...... ++..|+...++.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~-~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVR-LLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHH-HHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHH-HHHHHHhCccch
Confidence 34455688887775555 222221223444556778888999877544 3443333 45544443 444555544566
Q ss_pred HHHHHHHHHhHhccCCC-CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKY-AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
+.++.-+++........ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666554443332 2222223334556789999999988642 4677778889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 399 MRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV 474 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 474 (540)
|.+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 98763 34 445555555543 34799999999998765 568999999999999999999999999999886543
Q ss_pred CCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 042609 475 QPNVDEYNKLIQSLCLKALDW-RTAEKLLEDMRLK 508 (540)
Q Consensus 475 ~p~~~~~~~ll~~~~~~~g~~-~~A~~l~~~m~~~ 508 (540)
. +..+...++-... ..|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSL-HLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHH-HTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHh
Confidence 2 5556666664443 55655 7788899998875
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.00076 Score=62.34 Aligned_cols=333 Identities=12% Similarity=0.107 Sum_probs=213.7
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHH
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELI---ALFSKLGKGKAAFEVFNKFGDYGCVANQETY-YFTIEALS 243 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~-~~ll~~~~ 243 (540)
+.-.|.+.+|..-|....+. |+..|-++. ..|...|+...|+.=|.+.++. +||-..- ..-...+.
T Consensus 48 lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 34446666777777666653 444455444 4577788888888888888764 5764332 22234567
Q ss_pred hCCChhHHHHHHHHHHHCCCCC--CHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 042609 244 RRKIFDWAWSVCEKMIETGSLP--DSEK------------VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAF-L 308 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p--~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l 308 (540)
+.|.++.|..=|+..++..... .... ....+..+.-.|+...|+.....+.+ +.|....+.. -
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHH
Confidence 8888999988888888764211 1111 12234446667889999988888887 4465555444 4
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH----HHHH-----
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV----FNSV----- 379 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~l----- 379 (540)
-.+|... |.+..|+.-++...+.... +..++--+-..+...|+.+.++...++..+. .||... |..|
T Consensus 196 akc~i~~-~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 196 AKCYIAE-GEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHhc-CcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence 4455554 8898888877766554322 4455666777788899999999999888874 455321 2111
Q ss_pred ----HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 380 ----ISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT---YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 380 ----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
+......+++.++.+-.+...+....-..+. +..+-.+|...|++.+|++.-.+.+... +-|+.++.--..+
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 1223446677777777777766633222233 3445566778899999999999998863 2347888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HCCCCCcHHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR------LKGLHLNGITRALIRAVKEL 526 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~------~~g~~p~~~t~~ll~a~~~l 526 (540)
|.-..+++.|+.-|+...+.+ ++.... +.| .+.|.++.+.-. -.|++-|..-..+++||++|
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n--~sn~~~---------reG-le~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN--ESNTRA---------REG-LERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKL 418 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC--cccHHH---------HHH-HHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHH
Confidence 999999999999999988753 332221 222 244444433332 23666677777788888887
Q ss_pred HHh
Q 042609 527 EED 529 (540)
Q Consensus 527 ~~~ 529 (540)
.+.
T Consensus 419 Aqk 421 (504)
T KOG0624|consen 419 AQK 421 (504)
T ss_pred HHh
Confidence 764
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=0.0004 Score=71.12 Aligned_cols=208 Identities=12% Similarity=0.085 Sum_probs=113.5
Q ss_pred HHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CC--------CCCHHHHHHH
Q 042609 168 ICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY-GC--------VANQETYYFT 238 (540)
Q Consensus 168 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~--------~p~~~t~~~l 238 (540)
|...|+.+.|++-.+.++ +..+|..|.+.|.+..+.+-|.-.+..|... |. .++ .+=.-+
T Consensus 738 yvtiG~MD~AfksI~~Ik----------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakv 806 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK----------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKV 806 (1416)
T ss_pred EEEeccHHHHHHHHHHHh----------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHH
Confidence 355688888888777665 4578999999999999888887777776431 11 122 222222
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
.-.....|.+++|..+|++-++. ..|=..|...|.|++|.++-+.- +-..-..||......+-.. ++
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr~Tyy~yA~~Lear-~D 873 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK---DRIHLRNTYYNYAKYLEAR-RD 873 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc---cceehhhhHHHHHHHHHhh-cc
Confidence 33345678888888888877653 23444556666666666654421 1111123333333322222 55
Q ss_pred HHHHHHHHHHhH----------hcc---------CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----------C-
Q 042609 319 VKLALDMLDDFS----------GEA---------RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----------G- 368 (540)
Q Consensus 319 ~~~a~~~~~~m~----------~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g- 368 (540)
.+.|++.|++.. .+. ...|...|.-....+-..|+++.|+.+|...... |
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 555555554421 110 0112222333333333445555555544443321 0
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 369 ---------PPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 369 ---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
-..|....-.|.+.|-..|++.+|..+|.+.
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1234555556777888888888888887654
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.44 E-value=0.003 Score=64.66 Aligned_cols=359 Identities=16% Similarity=0.078 Sum_probs=202.5
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG-CVANQETYY 236 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p~~~t~~ 236 (540)
+..|+.+.-+....|+++.+.+.|++....... ....|+.+...|...|.-..|+.+.+.-.... -++|...+-
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-----~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-----EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 445666666667778888888888876654333 56889999999999999999999998765432 233445555
Q ss_pred HHHHHHHh-CCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCC
Q 042609 237 FTIEALSR-RKIFDWAWSVCEKMIET--GS--LPDSEKVGKIISWFCKG-----------GKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 237 ~ll~~~~~-~~~~~~a~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p 300 (540)
..-+.|.+ .+.++++.++-.+.+.. +. ......|..+.-+|... ....++.+.+++..+.+..-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 55555554 46777777777666652 11 12334444444444432 12346677777777665332
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCC--------
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS-EGPPP-------- 371 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p-------- 371 (540)
....|+.-+. |... ++.+.|.+..++....+...+...|..+.-.+...+++.+|+.+.+.... .|...
T Consensus 478 p~~if~lalq-~A~~-R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQ-YAEQ-RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHH-HHHH-HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 2333333332 2233 77888888888888877677788888888888888888888888776553 22200
Q ss_pred ----------CHHHHHHHHHHHHh---------cC--------------ChhHHHHHHHHH--------HHCC-------
Q 042609 372 ----------GNAVFNSVISAYSK---------AG--------------DMTPAMEMLKLM--------RSRG------- 403 (540)
Q Consensus 372 ----------~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~m--------~~~g------- 403 (540)
-..|...++..+-. .| +..+|......+ ...|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 01122222221110 00 111111111110 0001
Q ss_pred --C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 404 --L--KPD------VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG 473 (540)
Q Consensus 404 --~--~p~------~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (540)
+ .|+ ...|......+.+.+..++|...+.+..+.. ...+..|......+...|.+++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-
Confidence 0 122 2234455555666666677766666666542 344555555556666666777777766666543
Q ss_pred CCCC-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 474 VQPN-VDEYNKLIQSLCLKALDWRTAEK--LLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 474 ~~p~-~~~~~~ll~~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.|+ .....++-..+. +.|+..-|.. ++.++.+.+......-|.+...++..+
T Consensus 714 -dP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 714 -DPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred -CCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 233 233444444443 5555555555 666666655544444445555544444
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=0.00018 Score=77.72 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDY-GCVAN---QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
+...|-..|......++.++|.+++++.+.. ++.-. ...|..+++.-..-|.-+...++|++..+.. .-..+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888888888888888888887542 11111 2245555555555666667777777776642 2244567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHc
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCR 350 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 350 (540)
.|...|.+.++.++|.++|+.|.++- .-....|......+.+. ++.+.|..++.+....-.+ -.+....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777878788888888877777643 14455666666666665 5566666666665543111 011223333344445
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042609 351 MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP 406 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 406 (540)
.|+.+.+..+|+..... .+.-...|+..|++=.+.|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666666554 23344566666666666666666666666666665543
No 93
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=3.7e-05 Score=77.64 Aligned_cols=220 Identities=12% Similarity=0.024 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHH
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSV 344 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 344 (540)
|--..-..+...+...|-...|..+|++ ...|.-.|..|+.. |+..+|..+..+..+ .+|+...|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er---------lemw~~vi~CY~~l-g~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLL-GQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHh-cccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333445667778888889999988887 45667777777777 788888888887766 56778888888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 424 (540)
.+......-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+. .-..+|-.+-.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 88887777888888888765422 111111122236888888888877665532 2556787777788888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLED 504 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~ 504 (540)
+.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|-..+-... +-|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsv-dvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSV-DVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhh-hcccHHHHHHHHHH
Confidence 99999998888753 234578999999999999999999999999877644 3444444443433 78899999999888
Q ss_pred HHH
Q 042609 505 MRL 507 (540)
Q Consensus 505 m~~ 507 (540)
|..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 854
No 94
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=0.00054 Score=65.66 Aligned_cols=166 Identities=10% Similarity=0.061 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD--VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
+++++..++++.+.+.+ +..+|+.....+.+.|+ .+++..+++++.+.. +-|..+|+...-++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445554444443222 22233333333333333 244555665665543 235556666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANG---GQ----MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL----EEFDCALKL 465 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~---g~----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~ 465 (540)
+++.+.+.. |...|+.....+.+. |. .+++.....+++... +-|...|+-+...+... ++..+|.+.
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 666665443 444454444433332 11 234555555555543 33556666666666552 334556666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 466 LNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 466 ~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
+.+..+.++ .+......|+..|+
T Consensus 244 ~~~~~~~~~-~s~~al~~l~d~~~ 266 (320)
T PLN02789 244 CLEVLSKDS-NHVFALSDLLDLLC 266 (320)
T ss_pred HHHhhcccC-CcHHHHHHHHHHHH
Confidence 666555432 24556666666666
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.38 E-value=0.00036 Score=75.43 Aligned_cols=225 Identities=10% Similarity=0.011 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREK-KMY---PPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP 340 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~---p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 340 (540)
-....|-..|......+++++|.+++++.... ++. --...|.++++.-... |.-+...++|++..+..- ....
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqycd--~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQYCD--AYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHhcc--hHHH
Confidence 44566777788888888888888888877642 111 1234566666555444 777788888888876532 1344
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD---VYTYTGLMSG 417 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~ 417 (540)
|..|...|.+.+++++|-++++.|.+. +.-....|...++.+.+..+-+.|..++.+..+. -|- .....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 888888899999999999999999865 3346678888888888888888898888887765 333 3334444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHhCCCH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV--DEYNKLIQSLCLKALDW 495 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~g~~ 495 (540)
-.+.|+.+.+..+|+...... +--...|+..|++-.++|+.+.+..+|++....++.|-. ..|...+ .|-.+.|+-
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL-eyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL-EYEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH-HHHHhcCch
Confidence 567889999999999888763 224568999999999999999999999999887766543 4566666 355566763
Q ss_pred HH
Q 042609 496 RT 497 (540)
Q Consensus 496 ~~ 497 (540)
+.
T Consensus 1688 ~~ 1689 (1710)
T KOG1070|consen 1688 KN 1689 (1710)
T ss_pred hh
Confidence 33
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=0.00014 Score=67.10 Aligned_cols=101 Identities=12% Similarity=-0.061 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ---ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDS--EK 269 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~ 269 (540)
.....+..+...+...|++++|+..|+++.... +.+. .++..+..++.+.|++++|...++.+++....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 367788888889999999999999999987653 2222 46677888889999999999999999876421111 23
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHc
Q 042609 270 VGKIISWFCKG--------GKAKEAHVVYTLAREK 296 (540)
Q Consensus 270 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~ 296 (540)
+..+..++.+. |+.++|.+.|+.+...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 44444445443 5566666666666554
No 97
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0054 Score=63.94 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=130.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...+.|+.++|..+++.....+.. |..+...+-..|...|+.++|..+|++.... -|+..-...++.+|.+.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~-----D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGT-----DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCC-----chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 556779999999998877765554 8899999999999999999999999999875 478888899999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhC
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG----------KAKEAHVVYTLAREKK-MYPPQSVVAFLISSLCQE 315 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~ 315 (540)
.+.+-.++--+|-+. ++-+...+=++++.+.+.- -+.-|.+.++.+.+.+ -.-...-.-.-+..+-.
T Consensus 125 ~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~- 202 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL- 202 (932)
T ss_pred HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh-
Confidence 888766665555553 4445555556666665432 1345677777777654 11111111111111222
Q ss_pred CchHHHHHHHHHH-hHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042609 316 DETVKLALDMLDD-FSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP 369 (540)
Q Consensus 316 ~~~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 369 (540)
.|++++|++++.. ..+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 203 ~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 203 QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 3889999999843 33332232333334556677777888888777777776653
No 98
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.00083 Score=64.35 Aligned_cols=207 Identities=6% Similarity=-0.065 Sum_probs=136.3
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG-KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI 247 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (540)
...+..++|..+.+.+.++.+. +..+|+.--..+...| ++++++..++++.+.. +.+..+|+.--..+.+.+.
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 4456778899999999998876 7788888877777777 6799999999998765 4566677766656666665
Q ss_pred h--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---C---chH
Q 042609 248 F--DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE---D---ETV 319 (540)
Q Consensus 248 ~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~---~~~ 319 (540)
. +++..+++++++.. .-+..+|+...-++.+.|+++++.+.++++.+.+ .-+...|+.....+... + ...
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccH
Confidence 3 67888888888765 3577888888888888899999999999998876 33445555433222221 0 112
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRM----KDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK 385 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 385 (540)
++.+++..++..... -+...|+.+...+... +...+|...+.+....+ +.+......|++.|+.
T Consensus 200 e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 345555545444322 2445566666666552 23344666665554432 2244455556666654
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.34 E-value=0.0028 Score=71.16 Aligned_cols=301 Identities=12% Similarity=0.008 Sum_probs=179.5
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 042609 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS------LPD--SEKVGKIISWF 277 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------~p~--~~~~~~li~~~ 277 (540)
.....|++..+..+++.+.......+..........+...|+++++..++......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112222333445556678999999999987754311 111 11222334456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCC-----CcccHHHHHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQ----SVVAFLISSLCQEDETVKLALDMLDDFSGEARKY-----AIKPFSSVIRSL 348 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~ 348 (540)
...|++++|...+++..+.....+. ...+.+-..+.. .|++++|...+++........ ...++..+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 7899999999999987763211121 112222223333 499999999998876432111 112345566677
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISE----GPP--P-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR--GLKP--DVYTYTGLMSG 417 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t~~~ll~~ 417 (540)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886542 221 1 2234455566677789999999999886543 1112 23344455667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSR-LSPVTY-----HTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD---EYNKLIQSL 488 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~ 488 (540)
+...|+.++|...+.+.....-. .....+ ...+..+...|+.+.|.+++............. .+..+...+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 78899999999999887542111 111111 112344566899999999987765322111111 123344444
Q ss_pred HHhCCCHHHHHHHHHHHHHC
Q 042609 489 CLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 489 ~~~~g~~~~A~~l~~~m~~~ 508 (540)
. ..|++++|..++++....
T Consensus 702 ~-~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 702 I-LLGQFDEAEIILEELNEN 720 (903)
T ss_pred H-HcCCHHHHHHHHHHHHHH
Confidence 4 778999999999988653
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0028 Score=62.99 Aligned_cols=321 Identities=14% Similarity=0.130 Sum_probs=190.6
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--------------------
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCV-------------------- 229 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~-------------------- 229 (540)
+.+..++|...++.... -+..+...=...+-+.|++++|+++|+.+.+++.+
T Consensus 91 rlnk~Dealk~~~~~~~--------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR--------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhcccc--------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 34677777777662222 14445555566677888888888888887554321
Q ss_pred -------CCHHHHHHHHH---HHHhCCChhHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHhcCCHHH
Q 042609 230 -------ANQETYYFTIE---ALSRRKIFDWAWSVCEKMIETG-------------SLPDSE-KVGKIISWFCKGGKAKE 285 (540)
Q Consensus 230 -------p~~~t~~~ll~---~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~li~~~~~~g~~~~ 285 (540)
....+|..+.+ .++..|++.+|+++++...+.+ ++-+.. .-.-|.-++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01224544443 3456789999999998883321 111111 12234455677899999
Q ss_pred HHHHHHHHHHcCCCCCHHHH----HHHHHHHHhCCchHH-HHHHHHHHhH------------------------------
Q 042609 286 AHVVYTLAREKKMYPPQSVV----AFLISSLCQEDETVK-LALDMLDDFS------------------------------ 330 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~-~a~~~~~~m~------------------------------ 330 (540)
|..+|......+. +|.... |.++ ++.....-++ .++..++...
T Consensus 243 a~~iy~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887763 333221 1122 1111101011 0011110000
Q ss_pred -------h--ccCCCC--cccHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 331 -------G--EARKYA--IKPFSSVIRSLCR--MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 331 -------~--~~~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
+ ....+. ...+..++..+.+ ......+..++...-+....-...+.-.++......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 000111 1224444444432 22466677777776655333345566777888899999999999998
Q ss_pred --------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCH----HHHHHHHHHHHhcCCHHHHH
Q 042609 398 --------LMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH--SRLSP----VTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 398 --------~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p~~----~~~~~li~~~~~~g~~~~A~ 463 (540)
.+.+.+..|- +...+...|.+.++.+-|..++.+....- -.+.. .++.-++..-.+.|+-++|.
T Consensus 401 ~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 5555555554 45666777788887777888877765420 01222 33344444455789999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 464 KLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 464 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
.+++++.+.. .+|..+...++.+|+ +- +.+.|..+-.++
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~-~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYA-RL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHH-hc-CHHHHHHHhhcC
Confidence 9999999853 578999999999998 44 789998887765
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00013 Score=66.04 Aligned_cols=313 Identities=14% Similarity=0.113 Sum_probs=212.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK-IISWFC 278 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~ 278 (540)
+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|-...++..|-..|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 6667777788999999999998887764 347788888888999999999999999998765 466555542 235567
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 279 KGGKAKEAHVVYTLAREKKMYPPQSVVAF-LISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
+.+.+.+|.++...|.+. +....-.. +-.+..-..+++..+..+.++...+| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999887653 22211111 22222223488888999888877544 334444444555689999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-------------CCHHH--------HHHHH
Q 042609 358 KTLLSKMISE-GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK-------------PDVYT--------YTGLM 415 (540)
Q Consensus 358 ~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~~t--------~~~ll 415 (540)
.+-|+...+. |.. ....||..+..| +.|+++.|+++..++.++|++ ||+.. -+.++
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 9999998865 555 456788777555 678999999999999999864 33221 23344
Q ss_pred HH-------HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 416 SG-------YANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 416 ~~-------~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.+ +.+.|+.+.|.+.+-.|.-. ....|++|...+.-.=. .|++.+..+-+.-+.....- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 43 45788999999988888643 24567888766554332 34444455545545544443 35677777778
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHH
Q 042609 488 LCLKALDWRTAEKLLEDMRLKGL-HLNGITRALIRAVKEL 526 (540)
Q Consensus 488 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~ll~a~~~l 526 (540)
|| +..-++-|-.++.+=...-+ ..+...|.|+.++--+
T Consensus 320 yC-KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~ 358 (459)
T KOG4340|consen 320 YC-KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITC 358 (459)
T ss_pred Hh-hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhC
Confidence 89 77778888877765433322 2445566677665443
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00013 Score=71.96 Aligned_cols=221 Identities=17% Similarity=0.104 Sum_probs=157.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 321 (540)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.+ |+......-+...+.+.|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 457788999988888888874 3567788888888888888888998888888754 6665544444443444488888
Q ss_pred HHHHHHHhHhccCCC--------CcccHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 322 ALDMLDDFSGEARKY--------AIKPFSSVIRSLCRMKDVHGAKTLLSKMI-SEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 322 a~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
|+.+++.......+. +...-.. ..+.....+....++|-++. ..+..+|...+..|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 888888876543210 0000000 12222333456666676665 444346777777777778889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 393 MEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 393 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+.|+....... -|..+||.|-..++...+.++|+..|.+.++. +|+- .....|.-.|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998887632 26788999999999999999999999999886 5553 455566777889999999998887654
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0012 Score=59.11 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=45.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 383 YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE 458 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (540)
+.+..+++-|...++.|.+. -+..|.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 44455555555555555543 134444444444443 23455555556555543 34555555555555555666
Q ss_pred HHHHHHHHHHHHHC
Q 042609 459 FDCALKLLNEMKDV 472 (540)
Q Consensus 459 ~~~A~~~~~~m~~~ 472 (540)
+++|..++++....
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666655544
No 104
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.0031 Score=58.65 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=147.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhC---CchHHHHHHHHHHhHhccCCCCccc-HHHHHH
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL-CQE---DETVKLALDMLDDFSGEARKYAIKP-FSSVIR 346 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~---~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~ 346 (540)
.|+-.|.+.+++.+|..+.+++.- ..|-......++.+. .+. .....-|...|+-.-+.+..-|... -.++..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 444457788888888877665321 112222222222211 111 1345666777766655555444433 455666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL-MSGYANGGQME 425 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~ 425 (540)
.+.-..++++++-.++.+...=...|..-+| +.++++..|.+.+|+++|-.+....++ |..+|.++ .++|.++++.+
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 6666778888888888877653344444444 678999999999999999877665555 66677655 57888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHhCC---C
Q 042609 426 EACEILNEAKKNHSRLSPVTY-HTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY-------NKLIQSLCLKAL---D 494 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~ll~~~~~~~g---~ 494 (540)
.|++++-.+... .+..+. ..+.+-|.+++.+--|-+.|+++... .|+..-| .-++..+|.+.. -
T Consensus 446 lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 446 LAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCCccchHHHHHHHHHcCCCCCCc
Confidence 998887655433 244443 44457788999999999999988865 4555444 344444442221 1
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHH
Q 042609 495 WRTAEKLLEDMRLKGLHLNGITRALIRAVKELEE 528 (540)
Q Consensus 495 ~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~ 528 (540)
.....+++.-+. ..|+.....+|+.+++..+
T Consensus 521 ~~~~rEVvhllr---~~~nsq~E~mikvvrkwa~ 551 (557)
T KOG3785|consen 521 ISQMREVVHLLR---MKPNSQCEFMIKVVRKWAE 551 (557)
T ss_pred hhHHHHHHHHHH---hCCCchHHHHHHHHHHHHH
Confidence 122333333332 2455555555555555443
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00042 Score=61.91 Aligned_cols=250 Identities=17% Similarity=0.157 Sum_probs=157.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
+-+.-.|++..++..-...... +-+...-..+-++|...|.+... ...+.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 4445567777777665554332 24445555566777777765533 22222222 333333333333333344433
Q ss_pred HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q 042609 285 EAH-VVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSK 363 (540)
Q Consensus 285 ~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (540)
.-. .+.+.+.... .-+..++..+-...+...|++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 90 ~~~~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 90 SILASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3444444433 22333444444444444599999998887622 233444445666788889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 364 MISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 364 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
|... .+..|.+-|.+++.+ .+++.+|.-+|++|.++ ..|+..+.+-...++...|++++|..+++......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 9864 255677767776665 46799999999999886 57899999999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 042609 440 RLSPVTYHTLIRGYCKLEEF-DCALKLLNEMKDV 472 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 472 (540)
.-++.+...+|..-...|.- +-..+.+.+++..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 34566766666665566655 4445566666644
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0059 Score=64.33 Aligned_cols=290 Identities=16% Similarity=0.145 Sum_probs=134.8
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+.......+-+++|+.+|++..- +....+.||.- -+..++|.+.-++.. ....|..+..+-.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~---------n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM---------NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQL 1115 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc---------cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHH
Confidence 33334444555666666654332 44444444432 234444544444322 2345566666666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
+.|.+.+|.+-|-+ ..|...|..+++...+.|.+++-.+++...+++.-.|...+ .+|-+|.+. ++..+.+
T Consensus 1116 ~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt-~rl~elE 1186 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKT-NRLTELE 1186 (1666)
T ss_pred hcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHh-chHHHHH
Confidence 66666555544422 13445556666666666666666666655555544444332 344555554 4444444
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-----
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL----- 398 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----- 398 (540)
+++ ..|+......+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+--++
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 332 2344445555555555555555555555432 2244444444455555544433222
Q ss_pred -------------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 399 -------------------MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 399 -------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (540)
|...++.....-..-++.-|-..|-+++-+.+++...... +.....|+-|.-.|++- +.
T Consensus 1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp 1328 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KP 1328 (1666)
T ss_pred HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CH
Confidence 2222222233334445555555555555555554433221 22334445555555443 23
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 460 DCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
++..+-++-.-.+ ...-.+|++. .+...|.+..-++.+-
T Consensus 1329 ~km~EHl~LFwsR------vNipKviRA~-eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1329 EKMMEHLKLFWSR------VNIPKVIRAA-EQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHh------cchHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 3333333333211 1122445553 3555566665555543
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0064 Score=59.90 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
+|...|+.--+..-++.|..+|.+..+.+..+ ++..++++|.-||. ++.+-|.++|+--.+. ..-++.--...++.+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 46666666667777778888888887776666 67777777777664 5567777777764443 122334445666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 454 CKLEEFDCALKLLNEMKDVGVQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
...++-..+..+|++....++.|+ ...|..+|. |-..-|+...+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~-yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE-YESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH-HHHhcccHHHHHHHHHHHHHh
Confidence 777777788888888876655544 366777774 455778888888777776543
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.23 E-value=0.00021 Score=65.94 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDVGV-QP-NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.+...|.+.|++++|...+++..+... .| ....+..+...+. +.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL-KLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 456678889999999999999886521 12 2456777777776 889999999998888654
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=6.9e-05 Score=75.74 Aligned_cols=236 Identities=13% Similarity=0.108 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
--..-..+...+.+.|-...|+.+|++.. .|.-+|.+|+..|+..+|..+..+..+. +||...|..+.+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 33455667788899999999999998864 4677899999999999999999888874 689999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.....--+++|.++++....+. ...++.. .+. ++++.++.+.|+.-.+.+ .....+|-.+..+..+.+++.
T Consensus 466 v~~d~s~yEkawElsn~~sarA----~r~~~~~---~~~-~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA----QRSLALL---ILS-NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH----HHhhccc---ccc-chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 9888888999999987654331 1111111 122 388999999998765543 224566878888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
.|.+.|...... -+-+...||.+-.+|.+.|+-.+|...+++..+.+. -+-..|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999999998764 233567899999999999999999999999998873 356677788888899999999999999887
Q ss_pred HCCC-CCCHHHHHHHHHHH
Q 042609 436 KNHS-RLSPVTYHTLIRGY 453 (540)
Q Consensus 436 ~~g~-~p~~~~~~~li~~~ 453 (540)
.... .-|......++..-
T Consensus 615 ~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 615 DLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HhhhhcccchhhHHHHHHH
Confidence 6421 12444444444443
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0021 Score=67.46 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
.+.+|..+..+-...|.+.+|++-|-+. -|...|.-+++.+.+.|.+++-.+++....+..-+|... +.||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4688999999999999999999988653 467789999999999999999999998888876666654 47888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
+|++.+++.+.+.+.. .|+.......=.-++.. +.++.|.-+|... ..|..+...+...|++.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~-~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEE-KMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhh-hhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHH
Confidence 9999999988877653 24444443333344443 6666666555432 22444555555555554
Q ss_pred HHHHHHHHH------------------------HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 356 GAKTLLSKM------------------------ISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 356 ~a~~~~~~m------------------------~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
.|...-++. ...++-....-..-+|+-|-..|-+++.+.+++.-.... +...-.|
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmf 1316 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMF 1316 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHH
Confidence 444332221 111122223334556666777777777766665543210 1233445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
+-|.-.|.+-. .++..+-++-.-.. .| .--+|+++-+..-|.+..-+|.+..+.
T Consensus 1317 TELaiLYskyk-p~km~EHl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1317 TELAILYSKYK-PEKMMEHLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55555555432 23333222222211 11 124678888888888888887776653
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.22 E-value=0.00041 Score=61.79 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=64.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 042609 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG-YCKLEE--FDCA 462 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~~A 462 (540)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555554442 2355566666666666666666666666666653 2345555555554 345555 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.+++++..+.+.. +...+..+-..+ .+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~-~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDA-FMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhh
Confidence 6666666654321 333333333333 3566666666666666554
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0077 Score=59.33 Aligned_cols=186 Identities=18% Similarity=0.142 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCh
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN-------SVISAYSKAGDM 389 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~g~~ 389 (540)
.+++.|++-+....... -++.-++..-.+|...|++.+....-....+.|-. ...-|+ .+-.+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 45555555555554433 23333455555666666666655555554444322 111222 233356667778
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHH-------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 390 TPAMEMLKLMRSRGLKPDVYTYTGL-------------------------MSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~t~~~l-------------------------l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
+.|...|.+.......||..+=... -..+.+.|++..|...|.++++.. +-|..
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 8888888776655445544332111 222667788888888888888875 45678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.|..-.-+|.+.|.+..|+.=-+..++. .|+.. .|.-=..++ ....+|+.|.+.|++-.+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al-~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAAL-RAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888888877777765 33322 221111111 13456788888887776653
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.20 E-value=0.0001 Score=65.59 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=88.4
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhCCC--h
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL-SRRKI--F 248 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~-~~~~~--~ 248 (540)
.+.+++...++...+..+. |...|..+...|...|++++|+..|++..+.. +-+...+..+..++ ...|+ .
T Consensus 53 ~~~~~~i~~l~~~L~~~P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCc
Confidence 4445666666666666654 78888888888888888888888888887764 44666777766653 56666 4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
++|.+++++.++.+. -+..++..+...+.+.|++++|...|+.+.+..
T Consensus 127 ~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888887753 466777778888888888888888888887755
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=2.4e-06 Score=52.16 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN 231 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~ 231 (540)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=0.00016 Score=60.83 Aligned_cols=119 Identities=9% Similarity=-0.124 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 042609 177 VYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCE 256 (540)
Q Consensus 177 A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 256 (540)
-..+|+...+. ++..+..+...+...|++++|+..|+...... +.+...|..+..++.+.|++++|...|+
T Consensus 12 ~~~~~~~al~~--------~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 12 PEDILKQLLSV--------DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHHc--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556666554 33446667888899999999999999998765 5688889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 042609 257 KMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAF 307 (540)
Q Consensus 257 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 307 (540)
...+.. +.+...+..+..++.+.|+.++|...|+...+.. |+...+..
T Consensus 83 ~Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~~ 130 (144)
T PRK15359 83 HALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWSE 130 (144)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 999874 4678889999999999999999999999988754 66655543
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.00035 Score=71.47 Aligned_cols=256 Identities=16% Similarity=0.209 Sum_probs=163.4
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CC
Q 042609 196 TVEILNELIA--LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET-G--------SL 264 (540)
Q Consensus 196 ~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g--------~~ 264 (540)
|..+-.++++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6777777775 4788899999988777655 4467999999999999988887777777542 1 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHH
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSV 344 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 344 (540)
++ .+-.-..-.....|.+++|+.+|++.++.+ +++.+++..|.+++|+++-+.-.+... ..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 22 222222223457799999999999877644 566677777999999998765332222 2346556
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC-------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEG-------------------PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g-------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (540)
...+-..++.+.|++.|++..... -..|...|.---.-+-..|+++.|+.+|...++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 666666778888887776542110 011222233333333345666666666654442
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
|-++++..|-.|+.++|.++-++ .| |......|.+.|-..|++.+|..+|-+.. +|..-|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAI 1000 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAI 1000 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHH
Confidence 44556666667777777777654 22 55566677888888888888888887654 355556
Q ss_pred HHHHHhCCCHHH
Q 042609 486 QSLCLKALDWRT 497 (540)
Q Consensus 486 ~~~~~~~g~~~~ 497 (540)
+ +| +..++++
T Consensus 1001 R-lc-KEnd~~d 1010 (1416)
T KOG3617|consen 1001 R-LC-KENDMKD 1010 (1416)
T ss_pred H-HH-HhcCHHH
Confidence 4 46 4444444
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.0002 Score=75.55 Aligned_cols=160 Identities=9% Similarity=-0.017 Sum_probs=127.9
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...+-.|.....+.|++++|..+|+.+.+..+. +...+-.++..+.+.+++++|+..+++..... +-+......
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 445566677777889999999999999998886 88999999999999999999999999999875 456677778
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
+..++.+.|++++|..+|++....+ .-+..++..+...+-+.|+.++|...|+...+.. .+....|+..+ +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~-------~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL-------V 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH-------H
Confidence 8888999999999999999999843 3457889999999999999999999999987643 23345555444 3
Q ss_pred hHHHHHHHHHHhHhc
Q 042609 318 TVKLALDMLDDFSGE 332 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~ 332 (540)
+...-..+++++..+
T Consensus 231 ~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 231 DLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHHHcCcc
Confidence 344444555555443
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.0007 Score=66.93 Aligned_cols=249 Identities=13% Similarity=0.028 Sum_probs=174.1
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 207 FSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEA 286 (540)
Q Consensus 207 ~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 286 (540)
+.+.|+..+|.-.|+...+.. +-+...|..|...-...++-..|+..+++.++.. +-+..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 567888889988898887765 5577888888888888888888888888888763 24566677777788888888888
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHhCCchHHHHHHHHHHhH-hccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 287 HVVYTLAREKKMY--------PPQSVVAFLISSLCQEDETVKLALDMLDDFS-GEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 287 ~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
.+.++.-.....+ ++...-.. ..+... ..+....++|-++. ..+.+.|......|.-.|--.|++++|
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 8888776543210 00000000 011111 23444555555544 344446777788888888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
...|+..+... +-|...||.|-..++...+.++|+.-|.+.++. .|+ +.....|--+|...|.+++|...|-..+.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998753 336779999999999999999999999999886 555 45666677789999999999998876554
Q ss_pred C---------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 437 N---------HSRLSPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 437 ~---------g~~p~~~~~~~li~~~~~~g~~~~A~ 463 (540)
. +..++...|.+|=.++.-.++.|-+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2 11223345655555555555554333
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.15 E-value=0.0012 Score=66.87 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=10.8
Q ss_pred HHHHHHhcCChHHHHHHH
Q 042609 203 LIALFSKLGKGKAAFEVF 220 (540)
Q Consensus 203 li~~~~~~g~~~~A~~~f 220 (540)
.|..|.+.|.+-+|...-
T Consensus 621 aiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred HHHHHHHcCCchHHHHhh
Confidence 456666666666665543
No 120
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.4e-06 Score=50.98 Aligned_cols=33 Identities=45% Similarity=0.841 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555544
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=3.4e-06 Score=51.16 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVA 230 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p 230 (540)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00032 Score=62.62 Aligned_cols=147 Identities=15% Similarity=0.026 Sum_probs=83.2
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWA 251 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 251 (540)
|+-+....+........++ |....+.++....+.|++..|+..|++..... ++|..+|+.+--+|.+.|+++.|
T Consensus 80 G~a~~~l~~~~~~~~~~~~-----d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPK-----DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred ccccchHHHHhhhhccCcc-----cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHH
Confidence 4444444444443333332 55566666666677777777777777765543 56666777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHH
Q 042609 252 WSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLD 327 (540)
Q Consensus 252 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 327 (540)
..-|.+..+.- .-+...+|.|.-.|.-.|+.+.|+.++......+.. +..+-..+....... |++++|..+..
T Consensus 154 r~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~-g~~~~A~~i~~ 226 (257)
T COG5010 154 RRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQ-GDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhc-CChHHHHhhcc
Confidence 77776666652 234455666666666667777777666665554411 222222233333333 56666655543
No 123
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.11 E-value=0.0031 Score=64.63 Aligned_cols=130 Identities=17% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
.|......+.+.+..++|...+.+....- .-....|...-..+...|..++|.+.|....... +-++.+..++...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34556677777888888877776665542 2244555555566777888888888888877653 223466778888888
Q ss_pred hcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 455 KLEEFDCALK--LLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 455 ~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+.|+..-|.. ++.++.+.+. -+...|-.+-..+ ++.|+.+.|.+.|....+-
T Consensus 730 e~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~-k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVF-KKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHH-HHccchHHHHHHHHHHHhh
Confidence 8887777776 8888887652 2455555555544 5788888888888876554
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=0.0017 Score=69.62 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIR 346 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 346 (540)
..+-.+..+|-+.|+.++|..+++++.+.+ |+. ...|.+-..+... +.++|++++.+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~--------------- 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE--DKEKAITYLKKAIY--------------- 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh--hHHHHHHHHHHHHH---------------
Confidence 455566666777777777777777777655 433 3333333333333 66777666655432
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR-GLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
.+...+++.++..+|.++....+. +...+-.+ .+.+... |..--+.++--+-..|-..++++
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------ERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------HHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 245555666666666666654211 22111111 1112111 11122334444555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
++..+++.+.+.. +-|.....-++..|.
T Consensus 241 ~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 241 EVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 6666666666654 224444455555544
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.10 E-value=0.0087 Score=55.61 Aligned_cols=309 Identities=13% Similarity=0.057 Sum_probs=213.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT---IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG-KIIS 275 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~ 275 (540)
--.+...+...|++..|+.-|....+. |+..|..+ ...|...|+-..|+.=+...++. +||-..-. --..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 334555667789999999999888763 44445444 44677888888888888888775 67643322 2234
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC------------CCHHHHH--HHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMY------------PPQSVVA--FLISSLCQEDETVKLALDMLDDFSGEARKYAIKPF 341 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~------------p~~~~~~--~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 341 (540)
.+.+.|.++.|..-|+...+.... +....|+ ..+..++.. |+...|+.+...+.+. ...|...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi-~~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEI-QPWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhc-CcchhHHH
Confidence 578999999999999998876521 1111122 244455555 8999999999988875 34466678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHH---
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY----TGL--- 414 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~l--- 414 (540)
..-..+|...|++..|..=++...+.. ..+..++--+-..+...|+.+.++...++..+. .||.... ..|
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 888899999999999988888776653 345666666777888999999999888887765 4554322 111
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 042609 415 ------MSGYANGGQMEEACEILNEAKKNHSRLSPVT---YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKL 484 (540)
Q Consensus 415 ------l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 484 (540)
+......+++.++.+-.+...+......... +..+-.+|...|++.+|++.-.+.++. .|+ ..++.-=
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 1123456788888888888777643322333 344556677889999999999998865 455 6777766
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 042609 485 IQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRA 522 (540)
Q Consensus 485 l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a 522 (540)
..+|. -...++.|+.-|+...+.+-..+.+--.+=+|
T Consensus 348 AeA~l-~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 348 AEAYL-GDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHh-hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 77776 45579999999999988765444333344444
No 126
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.2e-06 Score=49.40 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00023 Score=59.27 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+......+...+...|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++..++.+ +.+..++..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 55667777788888999999999999987765 5577888888888989999999999999888764 456777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSV 304 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 304 (540)
.|...|++++|...|+...+.+ |+...
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 9999999999999999888755 44433
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.04 E-value=0.00073 Score=56.81 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=58.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
.+...+...|++++|...|+....... .+...|..+..++.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 445555666666666666666655532 245555666666666666666666666666543 335556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 458 EFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
+.++|...|+...+. .|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHH
Confidence 666666666666543 34444333
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0032 Score=56.04 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=99.8
Q ss_pred cCChHHHHHHHHHHhh---CC-CCCCHHH-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 210 LGKGKAAFEVFNKFGD---YG-CVANQET-YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
..+.++.++++.+|.. .| ..++..+ |..++-+....|+.+.|..+++.+... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4567777777777743 33 4556554 556666777778888888888887665 2222222111111234467777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKM 364 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 364 (540)
+|.++++.+.+.+ +.|.+++-.-+...-. .|+.-+|++-+....+. ...|...|.-+-..|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka-~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKA-QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHH-cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7777777777665 2233333322222222 25545555555555443 3345566666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 042609 365 ISEGPPPGNAVFNSVISAYSKAG---DMTPAMEMLKLMRSR 402 (540)
Q Consensus 365 ~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 402 (540)
.-.. +.+...+..+.+.+.-.| +++-|.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5431 223333344444333322 334455555554443
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.01 E-value=0.0019 Score=65.55 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=72.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC
Q 042609 274 ISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD 353 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 353 (540)
|.+......|.+|..+++.+.+... ..-|.-.+...+.+.|+++.|.++|-+. ..++-.|.+|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 4456677888888888887766542 2334444444444458888888888652 236778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
|++|.++-++.. |.......|-+-..-+-+.|++.+|++++-
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 888888776653 344455556555556666777777766653
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=0.0017 Score=69.54 Aligned_cols=233 Identities=12% Similarity=0.123 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDS-EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+++..+ .+.. ..+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~------ 96 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQN------ 96 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccc------
Confidence 45678899999999999999999999977765 3443 3344444577788887777666 2222 11111
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
.++.....+...|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.|.+...|+.. +
T Consensus 97 --------~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 97 --------LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred --------cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 33333333333443322 234467889999999999999999999999886 55888999999999999 9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSG---YA--NGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCKLEEFDCA 462 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~--~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A 462 (540)
+++|++++.+....-+ +..-|+.+... ++ ...+++.-..+.+.+... |..--..++-.+-..|-..++|+++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999988776511 11222222221 11 233444555555555543 3333456677777888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
..+++.+.+..-. |.....-++.+|-
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 9999999976533 7777888887765
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.002 Score=57.73 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANG 421 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 421 (540)
..+-..+...|+-+....+....... .+.|....+..+....+.|++..|...|.+..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55666677778888888877775533 34465666778888999999999999999987763 56889999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKL 501 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l 501 (540)
|+.+.|..-|.+..+.. .-++..++.|...|.-.|+.+.|..++......+.. |...-..+..... ..|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~-~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVG-LQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHh-hcCChHHHHhh
Confidence 99999999999998863 346678888888899999999999999998876543 4444444444544 78899999887
Q ss_pred HHHHH
Q 042609 502 LEDMR 506 (540)
Q Consensus 502 ~~~m~ 506 (540)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76544
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.95 E-value=0.0014 Score=69.48 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
++..+-.|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|...+++..... +-+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 35556666666666666666666666665542 2233445555556666666666666666665543 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHh
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 331 (540)
++.+.|++++|..+|+++...+ |+ ...+..+-..+... |+.++|...|+....
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRR-GALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 5666666666666666666532 22 33333333333333 666666666666544
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00053 Score=57.01 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 374 AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
.....+...+.+.|++++|.+.|+.+...+. .+...|..+...|.+.|++++|..+++...+.+ +.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3344455555566666666666666555432 244555555556666666666666666655543 33445555555566
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042609 454 CKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (540)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0069 Score=53.99 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=101.0
Q ss_pred CChhHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 246 KIFDWAWSVCEKMIET---G-SLPDSEK-VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
.+.++..+++.+++.. | ..++..+ |.-++-+...+|+.+.|..+++.+..+- |...-...+=.......|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 3455666666665432 3 4555544 4455566677888888888888876643 333322223333333346677
Q ss_pred HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
+|+++++.+.+.+ +.|.+++--=+-..-..|+.-+|.+-+....+. +.-|...|.-+-+.|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777766654 334444544444444455555555555555544 45566666666666666666666666666665
Q ss_pred HCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 042609 401 SRGLKPD-VYTYTGLMSGYAN---GGQMEEACEILNEAKKN 437 (540)
Q Consensus 401 ~~g~~p~-~~t~~~ll~~~~~---~g~~~~A~~~~~~m~~~ 437 (540)
-. .|. ...+..+-..+.- ..+++-|.+.|.+..+.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 44 222 2223333333222 22445555666655554
No 136
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=0.00018 Score=70.72 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 370 PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR--GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYH 447 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 447 (540)
+.+......+++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..+++..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334455555555555555555555555555544 111112233455566666666666666655555555556666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.|++.+.+.|++..|.++..+|...+...+..|+.--+.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 6666666666666666655555544444444444444444
No 137
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.90 E-value=0.00019 Score=55.32 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGC-VANQETYYFTIEALSRRK--------IFDWAWSVCEKMIETGSLPDSEK 269 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~ 269 (540)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566667777999999999999999999 899999999999887763 23456777788887778888888
Q ss_pred HHHHHHHHHh
Q 042609 270 VGKIISWFCK 279 (540)
Q Consensus 270 ~~~li~~~~~ 279 (540)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8877776644
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.89 E-value=0.0027 Score=66.76 Aligned_cols=165 Identities=16% Similarity=0.052 Sum_probs=110.4
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG-CVANQETYYF 237 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~p~~~t~~~ 237 (540)
+.|..|...|+..-+...|.+.|+..-+.... +...+......|+...+++.|..+.-..-+.. ...-...|..
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-----daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~ 567 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-----DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ 567 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence 34666666677666777788888888887765 78888899999999999998888833322211 0011122333
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE 317 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 317 (540)
.--.|.+.++...+..-|+...+.. +-|...|..+..+|..+|.+..|.++|.+...-+ |+..--...+...-...|
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhh
Confidence 3344566777777877777777654 3567788899999999999999999998876633 443322223333333348
Q ss_pred hHHHHHHHHHHhHh
Q 042609 318 TVKLALDMLDDFSG 331 (540)
Q Consensus 318 ~~~~a~~~~~~m~~ 331 (540)
.+.+++..+.....
T Consensus 645 kYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 645 KYKEALDALGLIIY 658 (1238)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888776543
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.0015 Score=64.02 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
...++..+...++++.|..+|+++.+.. |++ ...|+..+...++-.+|.+++++..+.. +-+......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666677888999999999988753 553 3457777878888889999998888662 2256666666667888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.++.+.|..+.+++.+. .|+. .+|..|..+|.+.|+++.|+-.++.+-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999886 3544 689999999999999999998888764
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=0.0002 Score=70.27 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=103.8
Q ss_pred cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 333 ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE--GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
+...+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445666788888888888999999999988754 2222234557999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL 456 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (540)
++.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888777888887777777666
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.87 E-value=1.4e-05 Score=47.17 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGC 228 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~ 228 (540)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777663
No 142
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.0003 Score=54.21 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 379 VISAYSKAGDMTPAMEMLKLMRSRGL-KPDVYTYTGLMSGYANGG--------QMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555555555555555 555555555555544321 222344444444444444444444444
Q ss_pred HHH
Q 042609 450 IRG 452 (540)
Q Consensus 450 i~~ 452 (540)
+..
T Consensus 111 l~~ 113 (120)
T PF08579_consen 111 LGS 113 (120)
T ss_pred HHH
Confidence 443
No 143
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=0.0014 Score=63.71 Aligned_cols=123 Identities=13% Similarity=-0.033 Sum_probs=67.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGK 282 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 282 (540)
.-.+...|++++|+..++.+...- +-|..-.......+.+.++.++|.+.++.++.. .|+ ....-.+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 333445666666666666655432 334444444455666666666666666666654 333 4444455566666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh
Q 042609 283 AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 283 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 331 (540)
..+|.++++...... +-+...|..+-.+|... |+..++..-..+...
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~-g~~~~a~~A~AE~~~ 436 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAEL-GNRAEALLARAEGYA 436 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 666666666555433 34455555555555554 555555555444433
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.058 Score=56.62 Aligned_cols=224 Identities=13% Similarity=0.095 Sum_probs=150.0
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALF--SKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...+++.+|.+..+++.+..+ | ..|..++.++ .+.|+.++|..+++.....+. -|..|...+-..|.+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~P------n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP------N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC------C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHh
Confidence 345677788888887776443 3 2344445544 578999999999988866553 38899999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCC---------
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQED--------- 316 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--------- 316 (540)
+.++|..+|++..+. .|+......+..+|.+.+++.+-.++--+|-+ ..|.. ..+...+.-+.+..
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999999876 57777778888899998888765544333322 12332 33333333333321
Q ss_pred chHHHHHHHHHHhHhccCCCC-cccHHHHHHHHHcCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYA-IKPFSSVIRSLCRMKDVHGAKTLLS-KMISEGPPPGNAVFNSVISAYSKAGDMTPAME 394 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 394 (540)
-...-|.+.++.+.+.+.+.. ..-...-...+-..|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 123446666666666541111 1112223344557888999999994 33343344455555677888999999999999
Q ss_pred HHHHHHHCCC
Q 042609 395 MLKLMRSRGL 404 (540)
Q Consensus 395 ~~~~m~~~g~ 404 (540)
+-.++..+|.
T Consensus 248 l~~~Ll~k~~ 257 (932)
T KOG2053|consen 248 LSSRLLEKGN 257 (932)
T ss_pred HHHHHHHhCC
Confidence 9999998864
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2e-05 Score=46.43 Aligned_cols=27 Identities=44% Similarity=1.020 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
|++++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.81 E-value=0.0073 Score=58.91 Aligned_cols=134 Identities=17% Similarity=0.096 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG-NAVFNSVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 395 (540)
|..++|+..++.+...- +-|..-.....+.+.+.++.++|.+.++++... .|+ ....-.+.++|.+.|+..+|+.+
T Consensus 320 ~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 320 GQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 77888888888876542 234555566677777888888888888888764 344 44555667778888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
++...... +-|...|..|-.+|...|+..++.....++... .|+++.|...+....+.
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~------------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL------------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHh
Confidence 87776663 336778888888888888888877777666542 36666666666666543
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.0013 Score=55.42 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=67.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV--YTYTGLMSGY 418 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~ 418 (540)
.++..+ ..++...+...++.+.+...... ....-.+...+...|++++|...|+........|+. .....|...+
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 333333 36666666666666665422211 122223445566667777777777776665422221 2333445556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 419 ANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
...|++++|+..++..... ......+....+.|.+.|+.++|...|+.
T Consensus 96 ~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6677777777776553322 22344555566667777777777776664
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.0007 Score=66.27 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=53.1
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
++.+...++++.|..+|+++.+.. +...-.|+..+...++-.+|++++++..+.. +.|...+..-...|.+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--------PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 333333344455555555444421 1223334444444455555555555544321 2344444444444555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
.++++.|..+.+++.... +-+-.+|..|..+|.+.|+++.|...+..
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 555555555555554431 12223455555555555555555544443
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.80 E-value=0.036 Score=54.87 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
|+.+|+.||.-+... .++++.+.++++... ++-....|..-|..-.+.++++..+.+|.+.+..- .+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 899999999988766 999999999999864 35567788888999999999999999999988764 45666766665
Q ss_pred HHHh-cCCHH----HHHHHHHHHHH-cCCCCC-HHHHHHHHH---------HHHhCCchHHHHHHHHHHhHh
Q 042609 276 WFCK-GGKAK----EAHVVYTLARE-KKMYPP-QSVVAFLIS---------SLCQEDETVKLALDMLDDFSG 331 (540)
Q Consensus 276 ~~~~-~g~~~----~A~~~~~~m~~-~~~~p~-~~~~~~ll~---------~~~~~~~~~~~a~~~~~~m~~ 331 (540)
--.+ .|+.. ...+.|+-... -|+.+- -..|+..+. .+..+ .+.+...++|+++..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~-QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN-QRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH-HHHHHHHHHHHHHhc
Confidence 4433 23333 34455665543 343332 233444332 22233 467777888888764
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.0017 Score=54.69 Aligned_cols=127 Identities=11% Similarity=-0.003 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFT 238 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~l 238 (540)
|..++..+ ..++...+...++.+....+.. .......-.+...+...|++++|...|+........++ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34444443 3566666666677666654430 00123333344566777777777777777776541221 1233345
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
...+...|++++|...++..... ......+....+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666777777777777553322 23344555666777777777777777764
No 151
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.70 E-value=0.00082 Score=58.63 Aligned_cols=87 Identities=17% Similarity=0.369 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC----------------CChhHHHHH
Q 042609 196 TVEILNELIALFSK-----LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR----------------KIFDWAWSV 254 (540)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~ 254 (540)
|-.+|..++..|.+ .|.++-....++.|.+.|+..|..+|+.||+.+-+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 66777778877765 477888888899999999999999999999987653 233557788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 255 CEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 255 ~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
+++|...|+.||..|+..|++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888766654
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.64 E-value=0.0013 Score=57.32 Aligned_cols=103 Identities=21% Similarity=0.401 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 370 PPGNAVFNSVISAYSKA-----GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
..|-.+|..+|+.|.+. |.++-....+..|.+-|+.-|..+|+.||..+=+ |.+ .|. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccc-c
Confidence 34566666666666543 4555555556666666666666666666665433 111 011 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK 491 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 491 (540)
.+.++..-| -.+.+-|++++++|...|+.||..++..+++.+..+
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 111111111 123466888888888888888888888888877633
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.097 Score=50.17 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..+++++-..+... +-+++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778888888887766654 47888899999999999999887765432 224577888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 455 KLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+.|...+|..+..++ + + ..-+..|. +.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~-~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYL-KCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHH-HCCCHHHHHHHHHHc
Confidence 999999988887762 1 2 33344555 778888887764443
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.1 Score=50.00 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=97.3
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
..+.+..|.-|...|+...|.++-.+.. .|+..-|-..|.+|+..+++++-..+... + -...-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 4457777888889999999999877763 47889999999999999999988876543 1 134789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
|.+.|+..+|..++.++ .+..-+..|.++|++.+|.+.--+.. |......+...
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~ 300 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKR 300 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 99999999999988772 12456889999999999988765543 56666666543
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0018 Score=49.17 Aligned_cols=94 Identities=27% Similarity=0.253 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK 279 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 279 (540)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445555666666666666666665542 2333555556666666666666666666665543 2333455566666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 042609 280 GGKAKEAHVVYTLARE 295 (540)
Q Consensus 280 ~g~~~~A~~~~~~m~~ 295 (540)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665543
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0018 Score=49.22 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..+...+...|++++|...|+.+.+..+. +..++..+...+...|++++|++.|+...+.. +.+..++..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-----NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHH
Confidence 34455667789999999999998876654 56788999999999999999999999988765 4455788888899
Q ss_pred HHhCCChhHHHHHHHHHHHC
Q 042609 242 LSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~ 261 (540)
+...|+++.|...+....+.
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHhHHHHHHHHHHHHcc
Confidence 99999999999999887754
No 157
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.14 Score=50.76 Aligned_cols=331 Identities=12% Similarity=0.045 Sum_probs=209.4
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-QETYYFTIEALS 243 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-~~t~~~ll~~~~ 243 (540)
-++.+..|+++.|...|.....+.+. |-+.|..=..+|++.|++++|++=-.+-++. .|+ ...|+-...++.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-----nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-----NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALF 81 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-----ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHH
Confidence 35677889999999999998887764 8899999999999999999999877776664 465 457888888999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHhCC-
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH---VVYTLAREK---KMYPPQSVVAFLISSLCQED- 316 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~- 316 (540)
-.|++++|..-|.+-++.. +.+...++.+.+++.......+.. .++..+... ........|..++..+-+..
T Consensus 82 ~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred hcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 9999999999999988763 345667778888772111000000 011110000 00011122222332222111
Q ss_pred --------chHHHHHHHHHHh-----HhccC-------CCC----------------------cccHHHHHHHHHcCCCH
Q 042609 317 --------ETVKLALDMLDDF-----SGEAR-------KYA----------------------IKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 317 --------~~~~~a~~~~~~m-----~~~~~-------~~~----------------------~~~~~~li~~~~~~g~~ 354 (540)
.+...+...+... ...+. .|. ..-...+.++.-+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1111121111110 00111 110 01156677777788889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTG-------LMSGYANGGQMEEA 427 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~~~g~~~~A 427 (540)
+.+.+-+....+.. -+..-++..-.+|...|.+.++...-....+.|-. ...-|+. +-.+|.+.++++.|
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 99999998887753 45555666677888889888887777766665532 2222333 33356667788889
Q ss_pred HHHHHHHHHCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVT-------------------------YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
...|.+.....-.|+... .-.=...+.+.|++..|.+.|.++++.. +-|...|.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 988888766544443211 0111345678899999999999999875 33666777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.--.+|. +.|.+..|++=.+..++.
T Consensus 397 NRAac~~-kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 397 NRAACYL-KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 7766665 888888888877776665
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.42 E-value=0.059 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKF 223 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m 223 (540)
|+.....|-..|++++|.+.|.+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 444445566667777777777665
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0074 Score=48.56 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLK--PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR--LSPVTYHTLIRGY 453 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~ 453 (540)
.+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|++++|...++.+...... .....+..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444455555555555554433110 01223344444555555555555555554443110 1123344444455
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042609 454 CKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555555543
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.33 E-value=0.01 Score=47.79 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHS--RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ--PNVDEYNKLI 485 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll 485 (540)
++..+...+.+.|++++|...+..+..... ......+..+...+.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555556666677777777766665421 111334555666666667777777777666643111 1123344444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
..+. +.|++++|.+.++++.+..
T Consensus 84 ~~~~-~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQ-ELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHH-HhCChHHHHHHHHHHHHHC
Confidence 4443 5666677777776666653
No 161
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.27 E-value=0.35 Score=51.77 Aligned_cols=224 Identities=12% Similarity=0.067 Sum_probs=144.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
+..|.+.. ...+...|-+..+... .=...|..|...|+..-+...|.+.|+...+.+ ..+...+......|.+. .+
T Consensus 466 a~~~~rK~-~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~-~~ 541 (1238)
T KOG1127|consen 466 ALGCMRKN-SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE-ST 541 (1238)
T ss_pred HHHHhhhh-HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc-cc
Confidence 33444433 5555555555554421 224578889999998889999999999887755 23344566677777776 88
Q ss_pred HHHHHHHHHHhHhccCC-CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042609 319 VKLALDMLDDFSGEARK-YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLK 397 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (540)
+++|..+.-...+.... .-...|.-..-.|-+.++..++..-|+...... +.|...|..+.++|...|++..|.++|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 99999883332221100 001113334445667888899999999887763 3478899999999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 398 LMRSRGLKPDVYTYTGLMS--GYANGGQMEEACEILNEAKKNH------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 398 ~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+.... +|+. +|...-. .-+..|.+.+|...+..+.... ..--..++..+...+.-.|-..+|..++++-
T Consensus 621 kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 621 KASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 87765 4443 3333332 2456889999999988876531 1112345555555555556666666666554
Q ss_pred H
Q 042609 470 K 470 (540)
Q Consensus 470 ~ 470 (540)
+
T Consensus 698 i 698 (1238)
T KOG1127|consen 698 I 698 (1238)
T ss_pred H
Confidence 4
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.26 E-value=0.0087 Score=58.73 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=44.6
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (540)
...+++++|...|+++.+..+. +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P~-----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDPN-----NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3445555555555555554443 44555555555555555555555555554432 22344455555555555555
Q ss_pred hHHHHHHHHHHHC
Q 042609 249 DWAWSVCEKMIET 261 (540)
Q Consensus 249 ~~a~~~~~~m~~~ 261 (540)
++|...|+..++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0067 Score=57.35 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIAL-FSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
|-.+++..-+.++.+.|+.+|....+... .+..+|-..... |...++.+.|..+|+...+. ++.+...|..-+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-----~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-----CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 44555666666778889999988874322 134455544444 33356777799999998764 456777788888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDS----EKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
..+...++.+.|..+|+..+.. + +.. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999998876 3 333 47888888888889999888888887763
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.023 Score=49.37 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI 273 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 273 (540)
....|..+...|...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+.+.++.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 566788888899999999999999999976542222 4678888889999999999999999998863 2345666777
Q ss_pred HHHHHhcCCHHHHHHH
Q 042609 274 ISWFCKGGKAKEAHVV 289 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~ 289 (540)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7788887775554433
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.24 E-value=0.00069 Score=50.96 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHSR-LSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555555555554211 1233333355555555555555555554
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.24 E-value=0.008 Score=56.81 Aligned_cols=128 Identities=10% Similarity=0.120 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA-YSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
|..+|...-+.+..+.|..+|.+..+.+ ..+...|-..... |...++.+.|..+|+...+. +.-+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444445445555555555554321 1112222222222 11233344455555555443 2224444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+.++.+.|..+|++.... +.++. ..|...++.-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555543 11111 3555555555555555555555555554
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.23 E-value=0.0068 Score=59.47 Aligned_cols=105 Identities=16% Similarity=-0.020 Sum_probs=87.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA 283 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 283 (540)
...+...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667899999999999998865 5577888889999999999999999999999874 34677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 284 KEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 284 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
++|...|++..+.+ |+.......+..+
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 99999999998855 6666655555443
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.19 Score=46.26 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=32.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 379 VISAYSKAGDMTPAMEMLKLMRSR--GLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+..-|.+.|.+..|..-|+.+.+. +..........++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 344566666666666666666654 223334445555666666666666666555443
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.17 E-value=0.00079 Score=50.66 Aligned_cols=81 Identities=25% Similarity=0.308 Sum_probs=38.9
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 386 AGDMTPAMEMLKLMRSRGL-KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALK 464 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 464 (540)
.|+++.|+.+++++.+... .++...+..+..+|.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555666666666555422 11233344455566666666666666655 21111 122333344555666666666666
Q ss_pred HHHH
Q 042609 465 LLNE 468 (540)
Q Consensus 465 ~~~~ 468 (540)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.11 E-value=0.011 Score=49.41 Aligned_cols=84 Identities=6% Similarity=-0.005 Sum_probs=40.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..|++++|..+|+.+....+. +..-|-.|...+-..|++++|+..|....... +-|...+-.+..++...|+.+
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~-----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW-----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 445555555555554444443 44444455555555555555555555544433 234444444444444445555
Q ss_pred HHHHHHHHHH
Q 042609 250 WAWSVCEKMI 259 (540)
Q Consensus 250 ~a~~~~~~m~ 259 (540)
.|.+.|+..+
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.06 E-value=0.15 Score=47.00 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 414 LMSGYANGGQMEEACEILNEAKKN--HSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+..-|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444466666666666666666654 11223345556666666677766666665544
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.091 Score=49.84 Aligned_cols=28 Identities=0% Similarity=-0.077 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhc
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIG 188 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~ 188 (540)
|....+.+-..+++++|...|....+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~ 65 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCY 65 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4445555555566777776666555443
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.04 E-value=0.032 Score=48.50 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGY 418 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 418 (540)
+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+++..+.... +...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 55555666667777777777777665432222 345666666777777777777777766654211 344455555556
Q ss_pred HhcCCHHH
Q 042609 419 ANGGQMEE 426 (540)
Q Consensus 419 ~~~g~~~~ 426 (540)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55555433
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.03 E-value=0.022 Score=47.53 Aligned_cols=99 Identities=8% Similarity=-0.021 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+......+...+...|++++|..+|+-+.... +-+..-|-.|..+|-..|++++|+..|........ -|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 44556667777889999999999999998765 34556667777788888999999999999998874 67888889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 042609 276 WFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~ 296 (540)
++.+.|+.+.|.+.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.00 E-value=0.0034 Score=44.83 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=41.5
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
+.|++++|...|+.+.+..+. +...+..+...|.+.|++++|.++++++.... |+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-----NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 456677777777777776655 67777777777777777777777777776653 554444443
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.018 Score=49.84 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 374 AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP--DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
..|..+...+...|++++|+..|++.......+ ...+|..+-..|...|+.++|...++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555556666666666666665442221 12355666666666666666666666666542 222344444444
Q ss_pred HHH-------hcCCHHHHHHHH
Q 042609 452 GYC-------KLEEFDCALKLL 466 (540)
Q Consensus 452 ~~~-------~~g~~~~A~~~~ 466 (540)
.|. ..|++++|...+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 444 455555443333
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.03 Score=51.43 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=79.6
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 285 (540)
-+.+.++|++|++.|.+.++.. +-|.+-|..-..+|++.|.++.|++=.+..+..+ +--..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3567889999999999988864 5577778888889999999999988888877753 2345678889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLIS 310 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~ 310 (540)
|++.|++..+ +.|+..+|-.-|.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 9999888776 5588877654443
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.21 Score=48.04 Aligned_cols=267 Identities=13% Similarity=-0.004 Sum_probs=124.4
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
+..++.+|+..+....++.++ ++.-|..=...+...|++++|+--.+.-.+.. +-....+.-.-+++...++..
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd-----~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPD-----NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCcc-----chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 445566677777777777665 66667666677777777777776665544321 011112222233333333444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQSVVAFLISSLCQEDETVKLALDMLDD 328 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 328 (540)
+|.+.++ +...| ....|+..++.+..... .|...+|-.+=..+....|+.++|...--.
T Consensus 135 ~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 4433333 00000 11111222222111111 133333333322233333555555554444
Q ss_pred hHhccCCCCcccHHHHHHHHH--cCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCChhHHH
Q 042609 329 FSGEARKYAIKPFSSVIRSLC--RMKDVHGAKTLLSKMISEGPPPGNAVFNSV-------------ISAYSKAGDMTPAM 393 (540)
Q Consensus 329 m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------------i~~~~~~g~~~~A~ 393 (540)
..+.. ....+...+++.+ -.++.+.+...|++.+..+ |+...-..+ -+-..+.|++.+|.
T Consensus 195 ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 43322 1122333333332 3456666666666665533 332211111 12234566666776
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCHHHHHHHHH
Q 042609 394 EMLKLMRSR---GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV-TYHTL--IRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 394 ~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--i~~~~~~g~~~~A~~~~~ 467 (540)
+.+.+.+.. ++.|+...|........+.|+.++|+.--++..+. |.. ....+ ..++.-.++|++|.+-|+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665543 34455555655555666666666666666665554 221 12222 223444556666666666
Q ss_pred HHHH
Q 042609 468 EMKD 471 (540)
Q Consensus 468 ~m~~ 471 (540)
+..+
T Consensus 346 ~a~q 349 (486)
T KOG0550|consen 346 KAMQ 349 (486)
T ss_pred HHHh
Confidence 6553
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.044 Score=56.37 Aligned_cols=133 Identities=11% Similarity=-0.110 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHHC-
Q 042609 196 TVEILNELIALFSKL-----GKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR--------KIFDWAWSVCEKMIET- 261 (540)
Q Consensus 196 ~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~--------~~~~~a~~~~~~m~~~- 261 (540)
|...|...+.+.... +..++|+.+|++..+.. +-....|..+..++... .++..+.+........
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 666666666654332 23666777777766654 45555555543333221 1122333333332222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 262 GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 262 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
....+...|.++.-.+...|++++|...+++..+.+ |+...|..+-..+... |+.++|.+.+++....
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~-G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELK-GDNRLAADAYSTAFNL 482 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence 122344556655555555677777777777766655 4544444444444444 6777777776665543
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.35 Score=49.58 Aligned_cols=235 Identities=14% Similarity=0.008 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCCHHHHHHHH-------HHHHhCCChhHHHHHHHHHHHCCCCCC
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGD-YGCVANQETYYFTI-------EALSRRKIFDWAWSVCEKMIETGSLPD 266 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~g~~p~~~t~~~ll-------~~~~~~~~~~~a~~~~~~m~~~g~~p~ 266 (540)
|.+..|..|.......-.++.|...|-+... .|++.-.. ...+. ..-+--|++++|+++|-.|.++.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 6789999999988888889999998887755 23321111 11111 111223788999998887766532
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP----QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
.|..+.+.|++-...++++. .|-..| ...|+.+-..++.. ..|++|.+.|..-.. -.
T Consensus 766 ------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~-~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEM-MEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccc---------hH
Confidence 56677777887666655542 221111 22344444444443 566666666554211 12
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG 422 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 422 (540)
..+.++.+..++++-+.+-.. ++-+....-.|.+++.+.|.-++|.+.|-+.. .|- ..+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHH
Confidence 344555555555444433333 23345555666777777777777766553221 111 2344455555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTY--------------HTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
++.+|.++-++..- |...+. .--|..+-+.|+.=.|-+++.+|.
T Consensus 893 QW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 66666555443221 111110 112445566666666666666665
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.81 E-value=0.14 Score=52.82 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=70.3
Q ss_pred CCCCcccHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 042609 334 RKYAIKPFSSVIRSLCRM-----KDVHGAKTLLSKMISEGPPPG-NAVFNSVISAYSKAG--------DMTPAMEMLKLM 399 (540)
Q Consensus 334 ~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g--------~~~~A~~~~~~m 399 (540)
...+...|...+.+.... ++.+.|..+|++..+. .|+ ...|..+..+|.... ++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 445566677777765432 2256777777777764 343 334444433332211 112222222222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 400 RSR-GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 400 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
... ....+...|.++.-.....|++++|...++++.+.. |+...|..+...|...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 221 112233455555444445566666666666666653 45666666666666666666666666666543
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.79 E-value=0.006 Score=43.54 Aligned_cols=63 Identities=29% Similarity=0.446 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
+.|++++|..+|+.+.... +-+...+..+..+|.+.|++++|..+++++... .|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4555666666666655543 224455555666666666666666666665543 34444444443
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.76 E-value=0.56 Score=44.92 Aligned_cols=295 Identities=15% Similarity=0.080 Sum_probs=168.9
Q ss_pred chHHHHHHHHH--hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHH-
Q 042609 159 GVVDALLKAIC--SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALF--SKLGKGKAAFEVFNKFGDYGCVANQE- 233 (540)
Q Consensus 159 ~~~~~li~~~~--~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~g~~p~~~- 233 (540)
+-|+.|-.++. ..|+-..|+++-.+....-.. |....-.|+.+- .-.|+++.|.+-|+-|... |...
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llss-----DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRl 154 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSS-----DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRL 154 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhc-----cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHH
Confidence 34566555443 346666777777665543332 555555555543 3479999999999999852 3221
Q ss_pred -HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHH--HHHHH
Q 042609 234 -TYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQSV--VAFLI 309 (540)
Q Consensus 234 -t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~--~~~ll 309 (540)
-+..|.-..-+.|..+.|.++-+..-... +.=...+.+.+...|..|+|+.|+++++.-+...+ .++..- -..++
T Consensus 155 lGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 155 LGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred HhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 12333334457788888888877765542 22345677888889999999999999887665432 233221 11222
Q ss_pred HHHH--hCCchHHHHHHHHHHhHhccCCCCccc-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 310 SSLC--QEDETVKLALDMLDDFSGEARKYAIKP-FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKA 386 (540)
Q Consensus 310 ~~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 386 (540)
.+-. ..+-+...|...-.+. ....||... -..-..++.+.|+..++-.+++.+-+..+.|+.. .+..+.+.
T Consensus 234 tAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~ 307 (531)
T COG3898 234 TAKAMSLLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARS 307 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcC
Confidence 2211 1123344444443332 224455443 2334566777888888888888777655555432 22223344
Q ss_pred CChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHH
Q 042609 387 GDMTPAMEMLKLMRSR-GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK-LEEFDCAL 463 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~ 463 (540)
|+ .+.+-++...+. .++| +..+-..+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++.
T Consensus 308 gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 308 GD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred CC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHH
Confidence 43 333333332221 1233 4455666666777777777777666665554 5677777777765443 47777777
Q ss_pred HHHHHHHHC
Q 042609 464 KLLNEMKDV 472 (540)
Q Consensus 464 ~~~~~m~~~ 472 (540)
..+.+..+.
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 777776654
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.74 E-value=0.0047 Score=43.66 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=31.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
.+.+.|++++|...|+.+.+..+. +...|..+...+...|++++|+..|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-----NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666666655543 556666666666666666666666666654
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.71 E-value=0.037 Score=47.87 Aligned_cols=92 Identities=12% Similarity=-0.016 Sum_probs=59.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP--GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
.|..+...+...|++++|...|++.......+ ...++..+...|...|++++|+..++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 35566666777788888888888887543222 23467777788888888888888888877652 2234455555556
Q ss_pred HH-------hcCCHHHHHHHHH
Q 042609 418 YA-------NGGQMEEACEILN 432 (540)
Q Consensus 418 ~~-------~~g~~~~A~~~~~ 432 (540)
|. ..|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 65 5566654444443
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.37 Score=49.01 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=17.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 255 CEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 255 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
+++|++.|-.|+... +...++-.|++.+|-++|.+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 445555555555433 23334445566666665543
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.18 Score=45.45 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS---- 416 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---- 416 (540)
.+.++..+.-.|.+.-....+.+..+...+-+......|.+.-.+.|+.+.|...|+...+..-+.|..+.+.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555555666666777777777765566677777777777778888888888876655433334444443332
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 417 -GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 417 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
.|.-.+++..|...+.++...+ .-|+..-|.-.-+..-.|+..+|.+..+.|+.. .|...+-++++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3445667777777777766654 224444443333333457777888888887765 34444444433
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.58 Score=42.33 Aligned_cols=62 Identities=3% Similarity=-0.105 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
+-+.++..+.-.|.+.-.+.++++..+..-+.+......+.+.-.+.|+.+.|...|+...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444444444455555555555554444334444444455555555555555555554443
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.52 E-value=0.079 Score=42.56 Aligned_cols=87 Identities=23% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS----PVTYHTLIRGYCK 455 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~ 455 (540)
++-..|+.++|+.+|++....|.... ...+-.+-..|...|++++|..++++..... |+ ......+..++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 44455555555555555555554432 2233344445555555555555555555431 22 1111222234445
Q ss_pred cCCHHHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMK 470 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~ 470 (540)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555554433
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.064 Score=51.31 Aligned_cols=133 Identities=16% Similarity=0.072 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMR----SRGLK-PDVYTYTGLMSGYANGGQMEEACEILNEAKK----NHS-RLSPV 444 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~ 444 (540)
.|..|-+.|.-.|+++.|+...+.-. +.|-+ .-...+..|-+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44555555556677777776654422 22221 1234566777777778888888877765432 221 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKD----V-GVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+..+|.+.|.-..++++|+.++.+-+. . ...-....+++|-.+|. ..|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~-alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN-ALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH
Confidence 566677777777778888777765321 0 11224566777777775 666778888777665543
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.50 E-value=0.013 Score=41.84 Aligned_cols=64 Identities=23% Similarity=0.214 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK-IFDWAWSVCEKMIE 260 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~ 260 (540)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666666666666665543 334455555555666665 46666666655544
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.35 Score=49.17 Aligned_cols=80 Identities=8% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGK--GKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 199 ~~~~li~~~~~~g~--~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
-++..=.+|.+-.+ +-+.+.-+++|+++|-.|+.... ...|+-.|.+.+|-++|.+ .|.. |..+.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHH
Confidence 34444455555443 34555667788888887887643 3456677888888888754 4432 233445
Q ss_pred HHhcCCHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVY 290 (540)
Q Consensus 277 ~~~~g~~~~A~~~~ 290 (540)
|.....++.|.++.
T Consensus 668 yTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555544
No 193
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.48 E-value=0.023 Score=51.47 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC----------------ChhHHHH
Q 042609 195 LTVEILNELIALFSKL-----GKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK----------------IFDWAWS 253 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~-----g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~ 253 (540)
.|-.+|-+.+..+... +.++-....++.|.+.|+..|..+|+.||..+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4666777777666543 556667777889999999999999999998876542 2234677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 254 VCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 254 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
++++|...|+.||..+-..|+.++++.+.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 77777777777777777777777776664
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.042 Score=50.47 Aligned_cols=152 Identities=21% Similarity=0.179 Sum_probs=97.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
.-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|+++.|++=.+......-. -..+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34667889999999999988852 346666777788899999999998887777765211 3568888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRGY-CKLEEFD---CALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKL 501 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l 501 (540)
+|.+.|++.++. .|+-.+|-.=+... -+.+... .+..-++.....|..|+....-. ..+ ..-....++
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~--~~l----~nnp~l~~~ 238 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN--GDL----MNNPQLMQL 238 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc--ccc----ccCHHHHHH
Confidence 999999888875 56666665444332 2233332 33333443334444455433211 111 122455556
Q ss_pred HHHHHH
Q 042609 502 LEDMRL 507 (540)
Q Consensus 502 ~~~m~~ 507 (540)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 666666
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.44 E-value=0.22 Score=40.00 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 042609 203 LIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD----SEKVGKIISW 276 (540)
Q Consensus 203 li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~ 276 (540)
+...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++...... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44556667888888888888877775443 3355566667777788888888887776642 32 1122222335
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~ 294 (540)
+...|+.++|...+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 566677777776665443
No 196
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.41 E-value=0.014 Score=41.10 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
..+...|++++|+..|++..+.. +-+...+..+..++...|++++|..+|+.+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555543 22444555555555555555555555555544
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.36 E-value=0.078 Score=49.35 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV----YTYTGLMSGYANGGQMEEACEILNEAKKNHS--RLSPVTYHT 448 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ 448 (540)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.-. ......+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444444556666666666666554 2222 3444555556666666666666666654310 011233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 449 LIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
+...|...|+.++|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455566666666666665543
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.33 E-value=0.47 Score=42.42 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYG--CVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
.+-.....+...|++++|++.|+.+.... -+--....-.++.++-+.|+++.|...++..++.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344444555666666666666665431 0111233344455555555555555555555543
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.28 E-value=0.027 Score=47.47 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE-----TGSLPDSEK 269 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 269 (540)
.+...++..+...|++++|+++.+.+.... +-|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 355566666667777777777777776654 45666777777777777777777777776643 366666554
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.33 Score=44.95 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR---KIFDWAWSVCEKMIETGSLPDSEKVGK 272 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ 272 (540)
|...|-.|...|...|++..|..-|.+..+.. ++|...+..+..++... ..-.++..+++++++.. +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 77888888888888888888888888886643 45666655555554332 34567888888888764 245556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLIS 310 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 310 (540)
|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 6677888888888888888888754 44444544443
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.23 E-value=0.093 Score=42.59 Aligned_cols=97 Identities=11% Similarity=0.181 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
|..++..+|.++++.|+++....+++..- |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566666677777777766666665432 2222110 00000 1112335678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q 042609 452 GYCKLEEFDCALKLLNEMK-DVGVQPNVDEYNKLIQSL 488 (540)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~ 488 (540)
+|+..|++..|+++.+... ..++.-+...|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888888876 567777788888887653
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.22 E-value=0.032 Score=46.97 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555443 234445555555555555555555555544
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.20 E-value=0.027 Score=40.22 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE-EFDCALKLLNEMK 470 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 470 (540)
+|..+-..+...|++++|+..|.+.++.. +-+...|..+..+|.+.| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444432 123344444444444444 3444444444433
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.18 E-value=0.11 Score=48.33 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIETGS--LPDSEKVGK 272 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ 272 (540)
.|+..+..+.+.|++++|+..|+.+.+.. |+ ...+-.+..+|...|++++|...|+.+++.-. ......+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666665532 32 23555566666666666666666666655311 111233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 273 IISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+...+...|+.++|..+|+.+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4455556666666666666666543
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.07 E-value=0.1 Score=42.40 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
|..++.++|.++++.|+++....+.+.. .|+..+... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567899999999999999999998755 344333210 0000 1123356788888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 042609 417 GYANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 455 (540)
+|+..|++..|.++++...+. +++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888888888888877653 566677888888765443
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=1.2 Score=39.91 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~ 294 (540)
++.++.+.|+++.|...|++..
T Consensus 48 la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 48 LAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.92 E-value=0.049 Score=39.36 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=37.6
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG 227 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g 227 (540)
.+.+.+++++|.++++.+....+. ++..|......+.+.|++++|.+.|+...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-----DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345566777777777777766654 66667677777777777777777777766543
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=1.2 Score=41.41 Aligned_cols=100 Identities=15% Similarity=0.026 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 407 DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---EFDCALKLLNEMKDVGVQPNVDEYNK 483 (540)
Q Consensus 407 ~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ 483 (540)
|...|-.|-..|...|+...|...|.+..+.. .+|+..+..+..++.... .-.++..+|+++... .|+...-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 56667777777777777777777777666653 345555555555443322 234666777776654 344444444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
++..-....|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 44332336667777777777776654
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.79 E-value=0.075 Score=38.37 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.|.+.+++++|.++++.+...+ +.+...|......|.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555555555555555443 22334444444555555555555555555543
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.72 E-value=2.3 Score=41.69 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-LKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY-HTL 449 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l 449 (540)
-..+|.+.|+...+..-++.|..+|-+..+.| +.+++..++++|.-++. |+..-|..+|+--... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567777777777777888888888887777 56777778888877664 4556677777654433 2444333 445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 450 IRGYCKLEEFDCALKLLNEMKDVGVQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+..+...++-+.|..+|+....+ +..+ ...|..+|. |-..-|+...|..+-++|.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~-YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIE-YESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHH-HHHhhcchHHHHhHHHHHHHH
Confidence 55666777777788888754422 1112 456777774 445677777777777777654
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=1.1 Score=45.67 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEG-PPPGN-----AVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
+..++...+-.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.++++.+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 5667777778888888888888776532 22111 234444444433 45678899999999987 688777
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 411 YTGLM-SGYANGGQMEEACEILNEAKKNH---SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486 (540)
Q Consensus 411 ~~~ll-~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 486 (540)
|...- +.+...|++++|.+.|++..... -+.....+--+.-.+.-.++|++|.+.|..+.+.. ..+...|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 76554 34567899999999999866421 12234555666677888999999999999999643 335666666665
Q ss_pred HHHHhCCCH-------HHHHHHHHHHH
Q 042609 487 SLCLKALDW-------RTAEKLLEDMR 506 (540)
Q Consensus 487 ~~~~~~g~~-------~~A~~l~~~m~ 506 (540)
++....|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 555567777 88888888775
No 212
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.53 E-value=0.26 Score=44.93 Aligned_cols=114 Identities=18% Similarity=0.364 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 370 PPGNAVFNSVISAYSK-----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV 444 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 444 (540)
+-|-.+|..++..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 4466667776666653 35566666667777777777777777777776543221 111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
.+....-.|-+ +-+-+..++++|...|+.||..+-..|+.++.+.+--..+..++.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 11111122222 224467777888888888888877777777764443333333333
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.48 E-value=1.4 Score=42.63 Aligned_cols=283 Identities=13% Similarity=0.098 Sum_probs=156.1
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH--hh--CCCCC-CHHHHHH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTV----EILNELIALFSKLGKGKAAFEVFNKF--GD--YGCVA-NQETYYF 237 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m--~~--~g~~p-~~~t~~~ 237 (540)
-+|+.|+.......|+...+.|.. |. ..|..|..+|.-.+++++|++....= .. .|-+. ...+-..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 457888888888888888887654 33 34666666777777888888764321 00 00000 0111111
Q ss_pred HHHHHHhCCChhHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 238 TIEALSRRKIFDWAWSVCEKM----IETGS-LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m----~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
|-..+--.|.+++|.-...+- .+.|- ......+..|...|...|+--.... -.+.|-.+..++
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-------- 168 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-------- 168 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH--------
Confidence 222223334455544332211 11110 1122344455566655543211000 001122222221
Q ss_pred HhCCchHHHHHHHHHHh----Hhcc-CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHH
Q 042609 313 CQEDETVKLALDMLDDF----SGEA-RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI----SEGPP-PGNAVFNSVISA 382 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m----~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~li~~ 382 (540)
..++.|.++|.+= ...| ....-..|..+.+.|.-.|+++.|....+.-. +.|-. .....+..+-++
T Consensus 169 ----~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 169 ----SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC 244 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence 1223333333221 1111 01113446677777777889999988776543 22322 233467788888
Q ss_pred HHhcCChhHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHH
Q 042609 383 YSKAGDMTPAMEMLKLMR----SRGL-KPDVYTYTGLMSGYANGGQMEEACEILNEAKKN----H-SRLSPVTYHTLIRG 452 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~----~~g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~ 452 (540)
+.-.|+++.|.+.|+... +.|- .....+..+|-+.|.-..++++|+.++.+-... + ..-....|-+|..+
T Consensus 245 hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 245 HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999887643 2221 234566778888888888999999988764431 1 11245678889999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~ 470 (540)
|...|..++|+.+.+.-+
T Consensus 325 ~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 325 FNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 999999999988877654
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.43 E-value=0.43 Score=47.10 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV----YTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666667777776666666555 3442 34666666666666666666666666664
No 215
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.42 E-value=2.5 Score=40.13 Aligned_cols=129 Identities=12% Similarity=0.225 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--CC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 042609 213 GKAAFEVFNKFGDYGCVANQETYYFTIEALSR--RK----IFDWAWSVCEKMIETGS---LPDSEKVGKIISWFCKGGK- 282 (540)
Q Consensus 213 ~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~- 282 (540)
+++.+.+++.|.+.|++.+.++|-...-.... .. ....|..+|+.|++.-. .++..++.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788888888888888887775444443 22 35568888888887632 2445555555443 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCch--HHHHHHHHHHhHhccCCCCcccHHH
Q 042609 283 ---AKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDET--VKLALDMLDDFSGEARKYAIKPFSS 343 (540)
Q Consensus 283 ---~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ 343 (540)
.+.++.+|+.+.+.|+..... -+.+-+-+++..... ...+.++++.+.+.|++.....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 355677777777767655544 233333333332111 3355666666666666655555443
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=3.1 Score=43.51 Aligned_cols=291 Identities=12% Similarity=0.051 Sum_probs=142.0
Q ss_pred hhhhHhhcccc------cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 042609 147 ENLVCFFKWVT------SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVF 220 (540)
Q Consensus 147 ~~ll~~~~w~~------~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 220 (540)
.-+++.-.|+. ...|......+.+..+. .-..+.+.+.+.-... ...-.+|..+....-..|+++-|..++
T Consensus 454 ~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~--~~~~iSy~~iA~~Ay~~GR~~LA~kLl 530 (829)
T KOG2280|consen 454 SVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAK--LTPGISYAAIARRAYQEGRFELARKLL 530 (829)
T ss_pred HHHHHHHHHhCCccccccHHHHHHHHHHHhccCc-cchHHHHHHHHHhccc--CCCceeHHHHHHHHHhcCcHHHHHHHH
Confidence 34556667743 23455555555554332 1223334443322221 124577888888888999999999998
Q ss_pred HHHhhCCC----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 221 NKFGDYGC----VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 221 ~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
+.=...+. -.+..-+...+.-+.+.|+.+....++-.|...- +...+... ..+.-.|..+|.+..+.
T Consensus 531 e~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 531 ELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLALSLYRQFMRH 601 (829)
T ss_pred hcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhhhHHHHHHHHh
Confidence 77544331 1244457778889999999999999988876641 11111111 12223344444443321
Q ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHHHH--HHh----HhccCCCCcccHHHHHHHHHcCCC----------HHHHHHH
Q 042609 297 KMYPPQSVVAFLISSLCQEDETVKLALDML--DDF----SGEARKYAIKPFSSVIRSLCRMKD----------VHGAKTL 360 (540)
Q Consensus 297 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~--~~m----~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~ 360 (540)
.- ..+ +..++.. ++..++..-| +.. ...+..|+ .......|.+... -.+-..+
T Consensus 602 ~~---~~~----l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l 670 (829)
T KOG2280|consen 602 QD---RAT----LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKL 670 (829)
T ss_pred hc---hhh----hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 10 000 0011111 1111111111 000 00111122 2222233333222 1111112
Q ss_pred HHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 361 LSKMI-SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 361 ~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
.+.+. +.|..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.++
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---- 742 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---- 742 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----
Confidence 22222 11222222334444445556677777766655554 4566667666777777777666555444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+.-|.-.+.+|.+.|+.++|.+++.+..
T Consensus 743 --sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 743 --SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred --CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 23445556677777777777777766554
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.24 E-value=0.077 Score=38.94 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKN----HS-RLS-PVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555544432 10 011 2345555555555555555555555543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.15 E-value=0.083 Score=38.75 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGV-LT-VEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.|+.+...+...|++++|...|++..+.....+.. |+ ..+++.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666777788888887777776652221111 22 4567777777777777777777777654
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.91 E-value=1.6 Score=35.15 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
.+...+......|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445566666777777777777766543 567777777777777777777777777777766653
No 220
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.87 E-value=0.86 Score=43.22 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCC-c
Q 042609 248 FDWAWSVCEKMIETGSLPDSEKVGKIISWFCK--GG----KAKEAHVVYTLAREKKM---YPPQSVVAFLISSLCQED-E 317 (540)
Q Consensus 248 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~-~ 317 (540)
+++...+++.|++.|+.-+..+|-+..-.... .. ...+|..+|+.|++... .++...+..++..-.... .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 56678899999999998888777654433333 22 35678888888887643 244555555554421111 1
Q ss_pred hHHHHHHHHHHhHhccCCCCcc--cHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIK--PFSSVIRSLCRMKD--VHGAKTLLSKMISEGPPPGNAVFN 377 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~ 377 (540)
..+.++.+|+.+...|...+-. ..+.++..+..... ..++.++++.+.+.|++.....|.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 1244455555555544433222 11222222111111 234555555555555555444444
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.76 E-value=2.4 Score=43.41 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKI-ISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 292 (540)
..+.|.+++..+.+. .|+...|... .+.+...|++++|.+.|+.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~ 292 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFER 292 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444555555555543 3444333322 2334445555555555554
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.75 E-value=0.5 Score=46.66 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=55.1
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGN----AVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
...++.+..+|.+.|++++|...|++.++. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445899999999999999999999998885 4553 35899999999999999999999999875
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.96 Score=42.47 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=117.3
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN----SVISAYSKAGDMTP 391 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~ 391 (540)
.|...+|-..++++.+. .+.|..++.-.=.+|.-.|+.+.-...++++... -.+|...|. ...-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 37888888888888765 4557777777888888899988888888888643 233443332 33344557889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 392 AMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR----LSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 392 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
|++.-++..+-+. .|...-.++...+--.|+..++.++..+-... .+ .-..-|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9988888776643 36777777777788888888888877664432 11 111223333445566788999999998
Q ss_pred HHH-HCCCCCCHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 468 EMK-DVGVQPNVDE---YNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 468 ~m~-~~g~~p~~~~---~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.=+ +.--+.|... |.-+. +.-.+...+.+..++-+.+-++
T Consensus 272 ~ei~k~l~k~Da~a~~~~ld~d-gv~~~~d~~~kld~la~~l~d~ 315 (491)
T KOG2610|consen 272 REIWKRLEKDDAVARDVYLDLD-GVDLRSDLWRKLDKLADSLTDK 315 (491)
T ss_pred HHHHHHhhccchhhhhhhhhhh-hHHhHHHHHHHHHhhhhhhcch
Confidence 643 3322333322 22222 2222444455555555555433
No 224
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.68 E-value=2.5 Score=36.32 Aligned_cols=103 Identities=15% Similarity=0.056 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPDSEKVGKI 273 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l 273 (540)
|++.---.|..+....|++.+|...|++...--+.-|....-.+.++....+++..|...++.+.+... ..+..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 466666677777888888888888888877544555777777777777778888888888887766531 0122334456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 274 ISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.+.|...|...+|+..|+.....-
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC
Confidence 677777888888888887776643
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.61 E-value=2.2 Score=35.35 Aligned_cols=124 Identities=14% Similarity=0.201 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
...+|..+...+.......+++.+...+. .+...++.+|..|++.+. .+..+.++. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 44566666666667777777777666553 455666777777766532 333333331 1 233334445666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL-EEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.+.++++..++.++.. |...+..+... ++++.|.+++.+- -+...|..++..
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 6666666666655422 11122333333 5666666655541 144455555543
No 226
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.59 E-value=2.2 Score=35.31 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=65.0
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
++..+...+........++.+...+. .+....|.++..|++.+ .++.++.++. ..+......+++.|.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-----~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-----ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-----cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 33344444555566666666555432 26677777777777653 3444455442 123333445667777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG-GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLC 313 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 313 (540)
+.+.++++.-++.++.. +...+..+... ++.+.|.+++.+ ..+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 77777766666655421 12223333333 666666666554 123445555554443
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=94.57 E-value=0.27 Score=41.46 Aligned_cols=85 Identities=11% Similarity=-0.050 Sum_probs=58.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..|++++|..+|..+-...+- |..-|..|...+-..+++++|+..|...-..+ .-|...+-....++...|+.+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 567888888888777766554 66677777777777788888888777664433 234444555666677777777
Q ss_pred HHHHHHHHHHH
Q 042609 250 WAWSVCEKMIE 260 (540)
Q Consensus 250 ~a~~~~~~m~~ 260 (540)
.|+..|...+.
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.54 E-value=4.8 Score=38.88 Aligned_cols=297 Identities=15% Similarity=0.087 Sum_probs=188.2
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCCHHH--HHH
Q 042609 199 ILNELIALFSK--LGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL--SRRKIFDWAWSVCEKMIETGSLPDSEK--VGK 272 (540)
Q Consensus 199 ~~~~li~~~~~--~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ 272 (540)
-|.+|-.++.. .|+-..|.++-.+-.+. +..|..-+..++.+- .-.|+++.|.+-|+-|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35666555543 57777777776655321 345666666666554 3469999999999999863 33222 223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc-CCCCccc--HHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEA-RKYAIKP--FSSVIRSL 348 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~--~~~li~~~ 348 (540)
|.----+.|..+.|.++-+..-..- |. .-.+...+...|.. |+++.|+++++.-.... +.+++.- -..|+.+-
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 3333456788888888877765543 32 34566789999998 99999999998866533 2233221 22333332
Q ss_pred Hc---CCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 349 CR---MKDVHGAKTLLSKMISEGPPPGNAVFN-SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 349 ~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 424 (540)
+. ..+...|...-.+..+ +.||.+--. .-..++.+.|++.++-.+++.+-+....|+. +. +..+.+.|+.
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdt 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDT 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCc
Confidence 21 2345566666555544 556654333 3357889999999999999999988555553 22 2223455543
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 425 EEACEILNEAKKN-HSRL-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 425 ~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
+..-+++..+. .++| +...-..+..+-...|++..|..--+..... .|....|..|-+.-....||-.++...+
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 33333333321 1233 4567777888888999998888777766643 5788888777765444568999999999
Q ss_pred HHHHHCCCCC
Q 042609 503 EDMRLKGLHL 512 (540)
Q Consensus 503 ~~m~~~g~~p 512 (540)
-+-.+.--.|
T Consensus 387 Aqav~APrdP 396 (531)
T COG3898 387 AQAVKAPRDP 396 (531)
T ss_pred HHHhcCCCCC
Confidence 8887664433
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.45 E-value=2.9 Score=35.98 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 042609 369 PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH---SRLSPVT 445 (540)
Q Consensus 369 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~ 445 (540)
..|++..--.|..++...|+..+|...|++...--..-|....-.+.++....++...|...++.+.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3455555556666666777777777777666544344456666666666666677777777766666542 1222 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.-.+.+.|...|..+.|...|+.....
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 334556666677777777777766654
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=94.35 E-value=0.46 Score=40.06 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
-+...|++++|+.+|+-+.-.+ |...-|..-+.++++..+.+++|+..|......+. -|...+-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3456778888888887776644 44455555666666666777777777766554432 34455556677777778888
Q ss_pred HHHHHHHHHHH
Q 042609 356 GAKTLLSKMIS 366 (540)
Q Consensus 356 ~a~~~~~~m~~ 366 (540)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88887777765
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=3.5 Score=37.11 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..-..+|....++++|-..+.+..+. ..-|...|+ ..+.++.|.-+.++|.+. .--...|+-...+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345666667777888888888877776531 122222222 122344455555555443 1122345566677
Q ss_pred HHhcCCHHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLA 293 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m 293 (540)
|..+|..+.|-..+++.
T Consensus 101 Y~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHhCCcchHHHHHHHH
Confidence 88888887777666654
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=1.2 Score=40.87 Aligned_cols=89 Identities=12% Similarity=-0.054 Sum_probs=37.5
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhCCCh
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG--CVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g--~~p~~~t~~~ll~~~~~~~~~ 248 (540)
.|++..|...|....+..+.....||. +-=|...+...|++++|..+|..+.+.- .+--..++--|.....+.|+.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344445555554444444332222222 2224444445555555555554443321 011123344444444444555
Q ss_pred hHHHHHHHHHHHC
Q 042609 249 DWAWSVCEKMIET 261 (540)
Q Consensus 249 ~~a~~~~~~m~~~ 261 (540)
++|..+|+++++.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.05 E-value=6.4 Score=38.44 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=86.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEG---PPPGNAVFNSVISAYSK---AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
.++-+|....+++...++.+.+...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445677777777777777776431 00011111122334445 6777777777777555545566667766666
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcC-CHHHHHHHH---HH-HHHCCCCC---
Q 042609 417 GYAN---------GGQMEEACEILNEAKKNHSRLSPVT---YHTLIRGYCKLE-EFDCALKLL---NE-MKDVGVQP--- 476 (540)
Q Consensus 417 ~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g-~~~~A~~~~---~~-m~~~g~~p--- 476 (540)
.|-. ....++|...|.+.-+.. ||..+ +.+|+....... .-.+..++- .. ..+.|..-
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 223677777777665542 44322 222333222111 111222322 22 22444333
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
+--.+.+++.+.. -.|+.++|.+..++|.+..
T Consensus 304 dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASV-LAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcC
Confidence 3334446666654 6789999999999998763
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.99 E-value=12 Score=41.49 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 042609 370 PPGNAVFNSVISAY----SKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-- 443 (540)
Q Consensus 370 ~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 443 (540)
.|+...+.....+| ...+++++|--.|+..-+ ..--+.+|..+|++.+|+.+..++.... +.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHH
Confidence 35555554444433 345666666655554321 1234667777788888877777765421 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.+-..|+.-+...++.-+|-++..+.... | .-.+..|| ++..|++|..+...-.
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~-ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLC-KAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHh-hHhHHHHHHHHHHhcc
Confidence 22256677777888888888887777642 1 12222345 5556777776665444
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.97 Score=43.68 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=89.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 344 VIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQ 423 (540)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 423 (540)
-.+.|.+.|++..|..-|++.... +. |.+.-+.++..... ..-..+++.|.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 357788899999999888886542 11 00111111111111 1124467777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCH-HHHHHHH
Q 042609 424 MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDW-RTAEKLL 502 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~-~~A~~l~ 502 (540)
+.+|++.-.+.++.+ ++|....--=..+|...|+++.|...|+++++. .|+......=|..+..+..++ +...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888876 567776666678888888999999999988875 565555554444444333333 3346777
Q ss_pred HHHHHC
Q 042609 503 EDMRLK 508 (540)
Q Consensus 503 ~~m~~~ 508 (540)
..|-..
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 777543
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=1.6 Score=42.34 Aligned_cols=96 Identities=20% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCC----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGV----------LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQET 234 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t 234 (540)
.+.+.+.|++..|...|+.....-...... .-..+++.|...|.+.+.+.+|++.-++.+..+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 456677788888888777644322211100 123344455555555555555555555555443 344444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
.--=-.+|...|+++.|+..|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444455555555555555555555543
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.86 E-value=2.9 Score=42.21 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
.-.+.+++-+-+.|..+.|+++...-. .-.+...++|+++.|.++.++ ..+...|..+-...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 335555555555555555555432211 122344455555555554332 22344555555544
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
... |+++.|++.|++.. -|..++-.|.-.|+.++..++.+.....|- +|....++...|++++.
T Consensus 358 L~~-g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 358 LRQ-GNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHT-TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHc-CCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 444 55555555555432 245555555555665555555555444331 23333444444555555
Q ss_pred HHHH
Q 042609 393 MEML 396 (540)
Q Consensus 393 ~~~~ 396 (540)
.+++
T Consensus 422 v~lL 425 (443)
T PF04053_consen 422 VDLL 425 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=10 Score=39.96 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 403 GLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
|..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++-+++-+.++. +.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence 433445566666777888999999998877654 47889999999999999999998888777662 33455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
-++.. |.+.|+.++|.+++-+..
T Consensus 749 PFVe~-c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 749 PFVEA-CLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHH-HHhcccHHHHhhhhhccC
Confidence 56655 458889999999987764
No 239
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.57 E-value=0.58 Score=43.51 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE-----TGSLPDSEKVGKI 273 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 273 (540)
++..++..+...|+++.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444444444444444444444444433 34444444444444444444444444444433 2455554444444
Q ss_pred HHH
Q 042609 274 ISW 276 (540)
Q Consensus 274 i~~ 276 (540)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=2 Score=45.37 Aligned_cols=178 Identities=14% Similarity=0.147 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHH
Q 042609 270 VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLIS---SLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIR 346 (540)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 346 (540)
...-++...+...++.|..+-+ ..+ .+......+.. .++...|++++|..-|-+-... .--..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------le~s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------LEPSEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc------CChHHHHH
Confidence 4456677777777777776643 333 22333222222 2233337777777766554432 11234566
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEE 426 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 426 (540)
-|-.......-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 666666666666667777777664 45555677777777777777666655443 2222 1123445555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
|..+-..... +......++ -..|++++|++.+..|.
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 6655544332 223333333 35577777777777654
No 241
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.47 E-value=4.4 Score=34.60 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=72.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCchHHHHHHHHHHhHh
Q 042609 253 SVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ-EDETVKLALDMLDDFSG 331 (540)
Q Consensus 253 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~~a~~~~~~m~~ 331 (540)
++.+.+.+.++.|+...+..+++.+.+.|++....++ ...++.+|.......+-.+.. ...-...|++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 4455555667777777777777777777775554443 334555555555444333222 11224445555555431
Q ss_pred ccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 332 EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
.+..+++.+...|++-+|.++.+..... +......++++-.+.++...-..+|+-..+
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2566777777777777777777664221 112223455555565555544444444433
No 242
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.44 E-value=1.6 Score=37.97 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCH----HH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP--VTYHTLIRGYCKLEEFDCALKLLNEMK---DVGVQPNV----DE 480 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~----~~ 480 (540)
.+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|+.....|++..+.....+.. +.|-.++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666665433332 344555666666666666666655544 22211111 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCC-cHHHHHHHHHHHHHHHhhh
Q 042609 481 YNKLIQSLCLKALDWRTAEKLLEDMRLKG--------LHL-NGITRALIRAVKELEEDAI 531 (540)
Q Consensus 481 ~~~ll~~~~~~~g~~~~A~~l~~~m~~~g--------~~p-~~~t~~ll~a~~~l~~~~~ 531 (540)
|..+. +...|++.+|-++|-+....- +.| |.+.|..|-++-.+++..+
T Consensus 118 ~~gL~---~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R~eL 174 (177)
T PF10602_consen 118 YEGLA---NLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDRSEL 174 (177)
T ss_pred HHHHH---HHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCHHHH
Confidence 22222 224567777777776654221 111 2344455555555555443
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.44 E-value=2.1 Score=39.27 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS--RLSPVTYHTLI 450 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li 450 (540)
.|+.-+..| +.|++..|..-|....+... .-....+-.|..++...|++++|..+|..+.+.-. +--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 44556666666666555421 11222344455566666666666666665555310 11123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 042609 451 RGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666666543
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=5.1 Score=37.27 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=83.7
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.....++..+|...|+......++ +...--.++..|...|+++.|..++..+...--.........-|..+.+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-----NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 334567888888888888887765 667777888889999999999999988865432222223223355556666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
...+..++....-.. +-|...-..+...|...|+.+.|...+-.+.++
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666555555555443 236677777888888888888888776665544
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.30 E-value=3.4 Score=34.83 Aligned_cols=110 Identities=10% Similarity=0.072 Sum_probs=61.1
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.-.+.++.+++..+++-+.-+.++ .+...++-. ..+...|++.+|+.+|+++...+ |....-..|+..|....
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE---FPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC---chHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 445667888899999998887765 123334433 34678999999999999987653 33333344444444332
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEA 286 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 286 (540)
.-..=..+-+++.+.+-.|+.. .|+..+....+...|
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPA 128 (160)
T ss_pred CChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence 2222223333455554333332 344444444444333
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.25 E-value=3.7 Score=33.10 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH--HHHHhCCC
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV-GVQPNVDEYNKLIQ--SLCLKALD 494 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~--~~~~~~g~ 494 (540)
.+..|+++.|++.|.+.+..- +-....||.-..++--.|+.++|++=+++..+. |-+ ......+.+. .+++..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 455667777777776666542 335566777777776677777777666666532 211 2222221111 12234566
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 042609 495 WRTAEKLLEDMRLKGLHLNGITRALIRAV 523 (540)
Q Consensus 495 ~~~A~~l~~~m~~~g~~p~~~t~~ll~a~ 523 (540)
-+.|..=|+..-+.|-..-....-.|+-|
T Consensus 131 dd~AR~DFe~AA~LGS~FAr~QLV~lNPY 159 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKFAREQLVELNPY 159 (175)
T ss_pred hHHHHHhHHHHHHhCCHHHHHHHHhcChH
Confidence 67777777766666644333333333333
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=6.8 Score=35.38 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHH
Q 042609 270 VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLC 349 (540)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 349 (540)
|.-...+|....++++|...+.+..+.- .-+...|.+ ...++.|.-+.+++.... --+..|.-....|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA--------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA--------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH--------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 4444456667777777777666554210 111111111 134455555555554321 11233556666777
Q ss_pred cCCCHHHHHHHHHHHHHC--CCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 350 RMKDVHGAKTLLSKMISE--GPPPGNA--VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~--g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
.+|.++-|-..+++.-+. ++.|+.. .|..-+......++...|.++ |..+-+.+.+..+++
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFT 167 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhh
Confidence 777777666666554321 2334322 222222222233333333333 334444566666666
Q ss_pred HHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHhCCCHHH
Q 042609 426 EACEILNEAKKN----HSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKDV---GVQPNVDEYNKLIQSLCLKALDWRT 497 (540)
Q Consensus 426 ~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~g~~~~ 497 (540)
+|-..+.+-... .--++. ..|...|-.|....++..|.+.++.-.+. .-.-+..+...||.+| ..||.++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay--d~gD~E~ 245 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY--DEGDIEE 245 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh--ccCCHHH
Confidence 665555432211 111222 44666667777778889999998874422 1233567788888876 5778887
Q ss_pred HHHHH
Q 042609 498 AEKLL 502 (540)
Q Consensus 498 A~~l~ 502 (540)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 76654
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.83 E-value=11 Score=37.92 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=22.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPP-PGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
.+.|+.++|.+.|++|.+.... .+......||+++...+.+.++..++.+-
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3445555555555555432111 12223344455555555555555555443
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.71 E-value=4 Score=32.87 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=69.2
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQE---TYYFTIEALS 243 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~---t~~~ll~~~~ 243 (540)
++...|+.+.|.+.|.+.....++ ....||.=..++.-.|+.++|++=+++..+..-..+.. .|..-...|-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 456778999999999999888876 88999999999999999999999999887643222322 2333344566
Q ss_pred hCCChhHHHHHHHHHHHCC
Q 042609 244 RRKIFDWAWSVCEKMIETG 262 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g 262 (540)
..|+-+.|..=|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888777776665
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.52 E-value=1.8 Score=40.37 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK-----DVGVQPNVDEYNKLI 485 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ll 485 (540)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444444444444444444444443 2344444555555555555555544444443 234555444444333
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=4.1 Score=38.45 Aligned_cols=116 Identities=12% Similarity=-0.036 Sum_probs=76.6
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhC
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ----ETYYFTIEALSRR 245 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~----~t~~~ll~~~~~~ 245 (540)
..|+..+|...|+++.+..+. |..+++-.=.+|.-.|+.+.-...++++... -.+|. +.-....-++...
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt-----Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT-----DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred ccccccHHHHHHHHHHHhCch-----hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh
Confidence 446666777778877776665 7777888778888888887777777777543 01332 2222223344567
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
|-+++|++.-++..+.+ +.|.....++...+--.|+..++.+...+
T Consensus 189 g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred ccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 77888877777766654 35666666777777777777777776654
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.21 E-value=5.6 Score=40.21 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=96.2
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...-.++++++.++.+.- +.-+. ....-.+.++..+-+.|.++.|+++-++-. .-+....+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~----i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPN----IPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHcCChhhhhhhhhhh-hhccc----CChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 334456777755554311 11111 134568999999999999999999865422 2355667889
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDML 326 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 326 (540)
+++.|.++.++ ..+...|..|.+...+.|+++-|++.|++..+ +..++--|... |+.+...++.
T Consensus 333 ~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~-g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST-GDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC-T-HHHHHHHH
T ss_pred CHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh-CCHHHHHHHH
Confidence 99999776543 35788999999999999999999999987432 33333333333 7777666666
Q ss_pred HHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q 042609 327 DDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSK 363 (540)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (540)
+.....| -++....++.-.|++++..+++.+
T Consensus 397 ~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555443 256666666667777777666654
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.10 E-value=0.42 Score=30.43 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
+|..+...|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666667777777777666654
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.84 E-value=5.8 Score=32.76 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=30.3
Q ss_pred hcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 385 KAGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH 438 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g 438 (540)
+.|++++|.+.|+.+..+-. .-....--.|+.+|.+.+++++|...+++.++..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 55666666666666655511 1123444555666666666666666666666553
No 255
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=2.3 Score=39.69 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 369 PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR---GLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP 443 (540)
Q Consensus 369 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 443 (540)
.+....+...++..-....++++++.++-+++.. ...|+ ..+|-.++. .=+.++++.++..=+..|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccch
Confidence 3344455555555555566666666666666543 11111 222222222 22455666666666666666777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777777666666665553
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.70 E-value=16 Score=36.77 Aligned_cols=164 Identities=10% Similarity=0.087 Sum_probs=93.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
.+|.-..+..++++-++.-++.++. .||-.+.-+++ +--......++++++++.++.|- .. +.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hchhh
Confidence 4555556778888888888887764 35443322222 22234557889999998877642 00 11110
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHcCCCHHHHHHH
Q 042609 282 KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCRMKDVHGAKTL 360 (540)
Q Consensus 282 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~ 360 (540)
..+..-..++....++..+-...- .-+..++.+.|+.++|.+++++|.+.... -.......|+.++...+.+.++..+
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~K-rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAK-RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhcccchhhhhhccccchhhhhH-HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 001101111111222211111111 23444555569999999999999865432 2344577899999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHH
Q 042609 361 LSKMISEGPPP-GNAVFNSVI 380 (540)
Q Consensus 361 ~~~m~~~g~~p-~~~~~~~li 380 (540)
+.+-.+...+. -...|+..+
T Consensus 318 L~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHhccccCCchHHHHHHHHH
Confidence 99976543322 334566544
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=7.2 Score=41.51 Aligned_cols=251 Identities=13% Similarity=0.138 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII----SWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
.+...-|..+.+...++.|..+-+. .+. |..+...+. +-+.+.|++++|...|-+....- .|. .+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HH
Confidence 3456667788888888888776544 333 333433333 44567899999998887654321 222 23
Q ss_pred HHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 042609 309 ISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-PGNAVFNSVISAYSKAG 387 (540)
Q Consensus 309 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 387 (540)
|.-+... ....+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.- .| ....+..+-+.+
T Consensus 404 i~kfLda-q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sn 477 (933)
T KOG2114|consen 404 IKKFLDA-QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSN 477 (933)
T ss_pred HHHhcCH-HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhC
Confidence 4444444 6788888888999888865 55667889999999999999887776554 2221 12 345667777888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
-.++|..+-..... +......++ -..+++++|.+.++.+.-...-+....|...+ . ....++-..++-
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili 545 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILI 545 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHH
Confidence 88888777655442 333344443 45788999999987653221111222222211 1 234555555555
Q ss_pred HHHHCCCCCCHHHHHHHHH----HHHHhCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 468 EMKDVGVQPNVDEYNKLIQ----SLCLKALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~~ll~----~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
+.......+........+. -...-.+.++....+++.|.+. .|+.
T Consensus 546 ~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~--s~~s 594 (933)
T KOG2114|consen 546 ELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI--SPDS 594 (933)
T ss_pred HHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc--CCCc
Confidence 5543222222222222221 0001356666666666666664 4544
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=91.56 E-value=16 Score=36.62 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=99.6
Q ss_pred HHHHHHHHhh-----cChhhHHHHHHHHH---HhcccCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHh
Q 042609 162 DALLKAICSS-----VGKKEVYALWDIVK---EIGEKEKGVLTVEILNELIALFSK---------LGKGKAAFEVFNKFG 224 (540)
Q Consensus 162 ~~li~~~~~~-----~~~~~A~~~f~~~~---~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~f~~m~ 224 (540)
..++++.... -..+.|..+|++.. +..+. ....|..+...+.. .....+|.++-++..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 5555555442 23456888898887 43332 24555555444332 223456777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS- 303 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 303 (540)
+.+ +-|......+..+..-.++++.|...|++....+. -...+|........-+|+.++|.+.+++..+.. |...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhH
Confidence 776 67888888888888888889999999999887642 234455555555666899999999998866644 4322
Q ss_pred --HHHHHHHHHHhCCchHHHHHHHHHH
Q 042609 304 --VVAFLISSLCQEDETVKLALDMLDD 328 (540)
Q Consensus 304 --~~~~ll~~~~~~~~~~~~a~~~~~~ 328 (540)
.....+..|+.. ..+.|..+|-+
T Consensus 408 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPN--PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCC--chhhhHHHHhh
Confidence 222334455553 57777777654
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.46 E-value=14 Score=41.11 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042609 405 KPDVYTYTGLMSGYA----NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDE 480 (540)
Q Consensus 405 ~p~~~t~~~ll~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 480 (540)
.|+...+..+..+|+ ..+++++|.-+|+..-+. .--+.+|..+|+|.+|+.+..+|... -+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 577777777766665 457788887777664332 23468888899999999988877631 12111
Q ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 481 --YNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 481 --~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
--.|..-+. ..++.-+|-++..+..
T Consensus 1000 ~~a~~L~s~L~-e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1000 ILAEELVSRLV-EQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHH-HcccchhHHHHHHHHh
Confidence 134444433 5666667766666554
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.44 E-value=6.2 Score=32.58 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=55.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHS--RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
...+.|++++|.+.|+.+...-. +-....--.|+.+|.+.|++++|...+++.++....-...-|...+.|++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34678999999999999988631 22346677889999999999999999999987644333355666666765
No 261
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.34 E-value=7.4 Score=34.93 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
..--+..|.+.-++.-|....+++ ++|-. + .+.|--|.+..+..--.++.+-....++.-+..-..+++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KI----iEPIQ-S-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKI----IEPIQ-S-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhh----hhhHH-h-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 334566676666666666666655 34322 2 222333555555444455555555555655555555544 356
Q ss_pred cCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 421 GGQMEEACEILNEAKKN-H-----------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
.|++.+|..-++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|+.|... .+.+.+.
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 78888888887765432 1 1466666666666654 457888888888888888876544 3444444
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.31 E-value=9.9 Score=33.64 Aligned_cols=123 Identities=20% Similarity=0.162 Sum_probs=57.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGP--PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 424 (540)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+-..+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45556666666666665543211 0122223333333445556666666665555441111244455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+.|...+....... |+ ...+..+...+...|..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555542 22 22333333333344455555555555543
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.17 E-value=16 Score=35.77 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYG---CVANQETYYFTIEALSR---RKIFDWAWSVCEKMIETGSLPDSEKV 270 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g---~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~ 270 (540)
..+--.++-.|....+++..+++.+.|...- +.-+...-....-++-+ .|+.++|++++..++...-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3333345555778888888888888886531 11122222223334445 67888888888876555556777777
Q ss_pred HHHHHHH
Q 042609 271 GKIISWF 277 (540)
Q Consensus 271 ~~li~~~ 277 (540)
..+...|
T Consensus 221 gL~GRIy 227 (374)
T PF13281_consen 221 GLLGRIY 227 (374)
T ss_pred HHHHHHH
Confidence 6666555
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.97 E-value=23 Score=37.15 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKD-VGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
..|..|.+--...|.++.|++.--.+.+ ..+-|....|..+.-+.| ....+...-+-|-++.
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac-a~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC-AVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh-hhhhhhhhHHHHHHHH
Confidence 3444555555667888888776555542 235566666665554444 3333333334343433
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=90.74 E-value=19 Score=35.98 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=103.1
Q ss_pred HHHHHHHHcC-----CCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCC
Q 042609 342 SSVIRSLCRM-----KDVHGAKTLLSKMISE-GPPPG-NAVFNSVISAYSK---------AGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 342 ~~li~~~~~~-----g~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~ 405 (540)
..++.+.... ...+.|+.+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+-.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5555555442 2356788888888722 24444 3344444333322 22345677777777777543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV---DEY 481 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~ 481 (540)
|......+-.+....++.+.|...|++....+ || ..+|......+.-.|+.++|.+.+++..+. .|.. ...
T Consensus 337 -Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~ 411 (458)
T PRK11906 337 -DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVI 411 (458)
T ss_pred -CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHH
Confidence 77787777777788888999999999998874 44 456666666667789999999999996654 3433 233
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 482 NKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 482 ~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
...++.|| .. ..++|++++-+-.
T Consensus 412 ~~~~~~~~-~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 412 KECVDMYV-PN-PLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHc-CC-chhhhHHHHhhcc
Confidence 34455777 55 4789999876543
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.67 E-value=12 Score=33.31 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 042609 175 KEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSV 254 (540)
Q Consensus 175 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 254 (540)
.-|+-=|.+...+.++ -+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|--| ++--.|++..|.+=
T Consensus 82 ~LAR~DftQaLai~P~-----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 82 ALARNDFSQALAIRPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred HHHhhhhhhhhhcCCC-----cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 3455555655555554 56889999999999999999999999998765222211222222 23345788888777
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 255 CEKMIETGS-LPDSEKVGKIISWFCKGGKAKEAHVVY-TLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 255 ~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
+...-+.+. .|=...|--++. ..-+..+|..-+ ++.. ..+..-|.+.|..++-..-..+ .++++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 766655432 232333332222 223445554333 2222 2446677776666654311112 222222221
Q ss_pred cCC------CCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 333 ARK------YAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 333 ~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
... .=..||--+..-+...|+.++|..+|+-.+.
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 110 0023455566666666777777777666543
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.67 E-value=0.55 Score=28.32 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777743
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.32 E-value=1.1 Score=28.54 Aligned_cols=41 Identities=17% Similarity=0.000 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIA 205 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~ 205 (540)
.+..+...+...|++++|.++|+.+.+..++ |...|..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-----~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-----DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----CHHHHHHhhh
Confidence 4556777889999999999999999998887 8888877653
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.19 E-value=15 Score=33.67 Aligned_cols=53 Identities=21% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|-..|..++|.+.-.-+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345555555555555555554 11111 233334445555555555554444333
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.13 E-value=8.9 Score=31.09 Aligned_cols=139 Identities=11% Similarity=0.150 Sum_probs=72.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
.-.|.+++..++..+..... +..-+|++|-..... -+-+- +++-+..-|.-.|.. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDa-a~C~y---vv~~LdsIGkiFDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDA-ADCDY---VVETLDSIGKIFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH---HHH---HHHHHHHHGGGS-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---Cccccceeeeecchh-hchhH---HHHHHHHHhhhcCch----------hhcchHHH
Confidence 34566777777776665432 345556655444332 22333 333333333333433 23333443
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
...+-.+ ..+.......++.+.+.|+-++-.+++.++.+. -.++....-.+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333322 123444556677777888888888888777653 3567777777888888888888888888888877
Q ss_pred CC
Q 042609 438 HS 439 (540)
Q Consensus 438 g~ 439 (540)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 74
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.02 E-value=0.52 Score=28.06 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=24.7
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042609 182 DIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFE 218 (540)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (540)
++..+..+. |..+|+.+...|...|++++|++
T Consensus 3 ~kAie~~P~-----n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAIELNPN-----NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHCCC-----CHHHHHHHHHHHHHCcCHHhhcC
Confidence 444455555 88999999999999999998863
No 272
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.02 E-value=11 Score=32.12 Aligned_cols=136 Identities=10% Similarity=0.114 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEK-VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSV-VAF 307 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ 307 (540)
....+|...++ +++.+..++|+.-|..+.+.|...-.+. .--+.......|+...|...|+++-.....|-..- ...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555554 3456677788888888887765432221 11223345667777788888877766554443321 111
Q ss_pred HHHHH-HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 308 LISSL-CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 308 ll~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
+=.+| ...+|.++......+-+...+...-...-..|.-+-.+.|++.+|...|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 11111 112355555555444444333222222223333344455555555555555543
No 273
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.69 E-value=18 Score=33.85 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=23.8
Q ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChh
Q 042609 336 YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE-GPPPGNAVFNSVISAYSKAGDMT 390 (540)
Q Consensus 336 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 390 (540)
++..+...+|..++..+++.+-.++|+..... +..-|...|..+|....+.|+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 33334444444444444444444444444322 23334444444444444444433
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.61 E-value=19 Score=34.03 Aligned_cols=160 Identities=17% Similarity=0.073 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVH---GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 341 ~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
+..++.+|...+..+ +|..+++.+...... ....+-.-+..+.+.++.+.+.+++..|...- .-....+..++..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHH
Confidence 556666676666544 455555556433222 23344444666666788888888888888762 1133445555554
Q ss_pred H---HhcCCHHHHHHHHHHHHHCCCCCCHH-HH-HHHHHH---HHhcC------CHHHHHHHHHHHH-HCCCCCCHHHH-
Q 042609 418 Y---ANGGQMEEACEILNEAKKNHSRLSPV-TY-HTLIRG---YCKLE------EFDCALKLLNEMK-DVGVQPNVDEY- 481 (540)
Q Consensus 418 ~---~~~g~~~~A~~~~~~m~~~g~~p~~~-~~-~~li~~---~~~~g------~~~~A~~~~~~m~-~~g~~p~~~~~- 481 (540)
+ ... ....|...+..+....+.|... .. ..++.. ..+.+ +++...+++.... ..+.+.+..+-
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4 333 3345666666666555555443 11 111111 11211 1444444555333 12233343332
Q ss_pred -------HHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 482 -------NKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 482 -------~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
+..-.. .+.++|++|.+.|+--
T Consensus 244 a~~~LLW~~~~~~--~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKH--YKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHH--HhhcCHHHHHHHHHHH
Confidence 222222 2678999999998754
No 275
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.57 E-value=25 Score=35.48 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
.|-...-+++..+..+.+.+-...+-.+|...| -+...|..++..|... .-+.-..+++++++..+ -|.+.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 366778889999999999999999999999976 7888999999999998 55667799999988765 4555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh-ccCCCCcccHHHHHHHH
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMY-----PPQSVVAFLISSLCQEDETVKLALDMLDDFSG-EARKYAIKPFSSVIRSL 348 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~ 348 (540)
..|-+ ++.+.+...|..+..+-+. .-...|.-++.-. +.+.+..+.+...+.. .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i---~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI---GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc---cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 66665 8889999999887765322 1123555555422 2567777777766654 23344455566677788
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAY 383 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 383 (540)
....++++|.+++..+.+.. ..|...-..+|..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88999999999999887763 34555555555544
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.50 E-value=0.83 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+|..|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566667777777777777776643
No 277
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.49 E-value=33 Score=36.67 Aligned_cols=322 Identities=16% Similarity=0.109 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCC--HHHHHHHHHHHH-hCCChhHHHHHHHHHHHCCCCCCHH---
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFG-DYGCVAN--QETYYFTIEALS-RRKIFDWAWSVCEKMIETGSLPDSE--- 268 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~g~~p~--~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~--- 268 (540)
++.-|..||. .|++.++-+. +..++|. ..++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 5677888876 4566666665 4444443 334555555555 6678999999988775543222221
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc---CCCCcc
Q 042609 269 --KVGKIISWFCKGGKAKEAHVVYTLAREKKMY----PPQSVVAFLISSLCQEDETVKLALDMLDDFSGEA---RKYAIK 339 (540)
Q Consensus 269 --~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~ 339 (540)
....++..|.+.+... |.+..++..+.--. +....+..+-..+....++...|.+.++...... ..+...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2335667777777766 88888776543211 2222222231222222268888888888776543 233344
Q ss_pred cHHHHHHHHH--cCCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHH-----
Q 042609 340 PFSSVIRSLC--RMKDVHGAKTLLSKMISEG---------PPPGNAVFNSVISAYS--KAGDMTPAMEMLKLMRS----- 401 (540)
Q Consensus 340 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~----- 401 (540)
.+..++.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4455555544 3455667777777664321 1335667777766555 45666666655544421
Q ss_pred --CC-C---C-------------------CCHHH---------HHHHHHH--HHhcCCHHHHHHHHH-------HHH-HC
Q 042609 402 --RG-L---K-------------------PDVYT---------YTGLMSG--YANGGQMEEACEILN-------EAK-KN 437 (540)
Q Consensus 402 --~g-~---~-------------------p~~~t---------~~~ll~~--~~~~g~~~~A~~~~~-------~m~-~~ 437 (540)
.. . . +..+. ..-++.+ ++..+..++|.++++ +.. ..
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 10 0 0 11111 1122222 233444445554444 444 11
Q ss_pred CCCCC--------HHHHHHHHH---------HHHhcCCHHHHHHHHHHHHHCCC-C-----CCHHHHHH-HHHHHHHhCC
Q 042609 438 HSRLS--------PVTYHTLIR---------GYCKLEEFDCALKLLNEMKDVGV-Q-----PNVDEYNK-LIQSLCLKAL 493 (540)
Q Consensus 438 g~~p~--------~~~~~~li~---------~~~~~g~~~~A~~~~~~m~~~g~-~-----p~~~~~~~-ll~~~~~~~g 493 (540)
...+. ...|...+. ..+-.|++..|.+....|.+..- . .....+.. +...|+...|
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g 418 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTG 418 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcC
Confidence 11111 122222222 22357889999999999884311 1 12223333 3333455679
Q ss_pred CHHHHHHHHH--------HHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 494 DWRTAEKLLE--------DMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 494 ~~~~A~~l~~--------~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
+.+.|...|. .....+...+...++.++.+-=+.
T Consensus 419 ~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 419 DLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred CHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 9999999997 666777777777777666554444
No 278
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=4.8 Score=37.65 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 042609 334 RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG---PPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT 410 (540)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 410 (540)
......+...++..-....+++++...+-++.... ..++...+ +.++.+ -.-+.++++.++..=++.|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34445556666766667788999998888876431 12222222 223333 33467799999988899999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNH 438 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g 438 (540)
++.+|..+.+.+++.+|.++.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877654
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.25 E-value=15 Score=32.44 Aligned_cols=190 Identities=19% Similarity=0.142 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHhHhc-cCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHH
Q 042609 317 ETVKLALDMLDDFSGE-ARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS-AYSKAGDMTPAME 394 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~ 394 (540)
+....+...+...... ........+......+...++...+...+.........+ ......... .+...|+++.|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 151 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALE 151 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444443321 112223334455555556666778888888776643332 122222233 7889999999999
Q ss_pred HHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 395 MLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 395 ~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.+...... ......+......+...++.+.+...+....+.........+..+...+...++++.|...+......
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 9999865321 12344555555557788999999999999988742114678888889999999999999999999865
Q ss_pred CCCCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 473 GVQPN-VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 473 g~~p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.|+ ...+..+...+. ..|.++.+...+.+..+...
T Consensus 232 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 232 --DPDNAEALYNLALLLL-ELGRYEEALEALEKALELDP 267 (291)
T ss_pred --CcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 333 445555555565 67788999998888876543
No 280
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.18 E-value=25 Score=34.90 Aligned_cols=130 Identities=10% Similarity=0.125 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhcc-CCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEA-RKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF-NSVI 380 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li 380 (540)
..|...|....+. .-.+.|..+|-+..+.+ ..+++..++++|..++. |+..-|..+|+.-... + ||...| +-.+
T Consensus 398 ~v~C~~~N~v~r~-~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRK-RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHH
Confidence 3444455554444 34566666666666655 45556666666665543 4455566666554332 1 222222 3344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
.-+...++-+.|..+|+....+ +.-+ ...|..+|.-=..-|++..+..+-++|.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4555566666666666644333 1112 345666666556666666666665555553
No 281
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.14 E-value=19 Score=33.59 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCC
Q 042609 368 GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR-GLKPDVYTYTGLMSGYANGGQMEEACEILNE-----AKKNHSRL 441 (540)
Q Consensus 368 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-----m~~~g~~p 441 (540)
|-.++..+...+|+.++..+++.+-.++++..... +..-|...|..+|......|+..-...+..+ +++.++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 34566677788888899999999888888876655 5556888899999999999988777766654 34556667
Q ss_pred CHHHHHHHHHHHHhc
Q 042609 442 SPVTYHTLIRGYCKL 456 (540)
Q Consensus 442 ~~~~~~~li~~~~~~ 456 (540)
+...-.+|-+.+.+.
T Consensus 277 ~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 277 TDELRSQLSELFKKV 291 (292)
T ss_pred CHHHHHHHHHHHHhc
Confidence 776666665555443
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.04 E-value=12 Score=31.16 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=39.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG 227 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g 227 (540)
...+.+++..+++.|.-+.++. +...++-.. .+...|++++|+++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~---~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNL---KELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCc---cccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 4678888999999988877652 233444443 4678999999999999998764
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.30 E-value=37 Score=35.74 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHH
Q 042609 175 KEVYALWDIVKEIGEKEKGVLTVEILNELIAL-----FSKLGKGKAAFEVFNKFGD-------YGCVANQETYYFTIEAL 242 (540)
Q Consensus 175 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~f~~m~~-------~g~~p~~~t~~~ll~~~ 242 (540)
..|.+.++.....+ +...-..+... +....+.+.|+..|+.+.+ .| +.....-+-.+|
T Consensus 229 ~~a~~~~~~~a~~g-------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG-------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hHHHHHHHHHHhhc-------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 35677777666654 23333332222 3456678888888888765 33 222444455555
Q ss_pred HhCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 042609 243 SRRK-----IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK-GGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 243 ~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~ 297 (540)
.+.. +.+.|..++.+.-+.|. |+....-..+..... ..+...|.++|...-..|
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 5432 44556666666666653 444333332222222 234556666666655555
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.13 E-value=38 Score=35.67 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHH
Q 042609 353 DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK-AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA--NGGQMEEACE 429 (540)
Q Consensus 353 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~A~~ 429 (540)
+.+.|..++.+..+.|. |+....-..+..... ..+...|.++|...-+.|.. ...-+.+++.... ...+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 44456666665555542 233322222221111 13345666666666555532 2222222222111 2235556666
Q ss_pred HHHHHHHCC
Q 042609 430 ILNEAKKNH 438 (540)
Q Consensus 430 ~~~~m~~~g 438 (540)
++++.-+.|
T Consensus 386 ~~k~aA~~g 394 (552)
T KOG1550|consen 386 YYKKAAEKG 394 (552)
T ss_pred HHHHHHHcc
Confidence 666665555
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=23 Score=33.12 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=68.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
....|++.+|..+|......... +...--.++.+|...|+.+.|..++..+...--.........=|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34566777777777776654222 34455566777777777777777777765441111111212223334444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
..+-.+.-.. +-|...-..+...|...|+.++|.+.+-.+.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444443 2255666667777777788887777766665
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.96 E-value=24 Score=33.26 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=10.5
Q ss_pred HHhcCCHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEM 469 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m 469 (540)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34566777777766643
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.61 E-value=7.3 Score=33.84 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN--QETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
..+..+...|.+.|+.++|++.|.++.+....+. ...+-.+|+.+.-.+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5788899999999999999999999988654443 445777888888889998888887776543
No 288
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=33 Score=33.72 Aligned_cols=176 Identities=11% Similarity=0.019 Sum_probs=84.9
Q ss_pred CCHHHHHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042609 230 ANQETYYFTI-EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS--WFCKGGKAKEAHVVYTLAREKKMYPPQSVVA 306 (540)
Q Consensus 230 p~~~t~~~ll-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 306 (540)
|.-.+|-.+- .++.-.+++++|.++--..++..- .+ .+..+++ ++--.++.+.|...|++.+..+ |+.....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 3334444442 344566777877777766666421 11 2222332 2334567777777777766654 4433221
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE---GPPPGNAVFNSVISAY 383 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~ 383 (540)
.+ -...+.++.+...| +-..+.|++..|.+.+.+.+.. +..++...|.....+.
T Consensus 241 ~~-----------~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~ 297 (486)
T KOG0550|consen 241 SA-----------SMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN 297 (486)
T ss_pred hH-----------hhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh
Confidence 11 11111111112111 2234566666666666665542 2234444455555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHH-H--HHHHHhcCCHHHHHHHHHHHHHC
Q 042609 384 SKAGDMTPAMEMLKLMRSRGLKPDVYTYTG-L--MSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-l--l~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
.+.|+.++|+.--++...- |..-.-. + ..++...+++++|.+-++...+.
T Consensus 298 ~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 298 IRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666655555433 2221111 1 22333455666666666655544
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.46 E-value=19 Score=30.45 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=8.8
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 042609 384 SKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~ 402 (540)
.+.|++.+|..+|+++.+.
T Consensus 55 i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHhCCHHHHHHHHHHHhcc
Confidence 3444444444444444433
No 290
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.26 E-value=38 Score=33.76 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 042609 424 MEEACEILNEAKKNHSRLS----PVTYHTLIRG--YCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRT 497 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 497 (540)
+.+-..+-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|+..+|.-+=-++. ...++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~-e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLM-ENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHH-HHhhHHH
Confidence 3333444444455665543 2344555443 4467888877655444443 5788888876655554 5668999
Q ss_pred HHHHHHHHH
Q 042609 498 AEKLLEDMR 506 (540)
Q Consensus 498 A~~l~~~m~ 506 (540)
|..++.++.
T Consensus 514 A~~~l~~LP 522 (549)
T PF07079_consen 514 AWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC
Confidence 999888763
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.97 E-value=28 Score=31.92 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=37.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 379 VISAYSKAGDMTPAMEMLKLMRSRGLKP---DVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
+.+-|.+.|.+..|..-+++|.+. ..- ....+-.+..+|...|-.++|...-+-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345677777777777777777776 211 1234455666777777777777766666554
No 292
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.95 E-value=37 Score=36.22 Aligned_cols=220 Identities=15% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHHCCCCCCHHH--
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI-------FDWAWSVCEKMIETGSLPDSEK-- 269 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~~-- 269 (540)
+| .+|-.|.++|++++|.++.++.... .......|...+..+....+ -+....-|++..+.....|+.-
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 44 5666788999999999999666543 35566677888888876532 3355566666665543224432
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCc----------hHHHHHHHHHHhHhccCCCCc
Q 042609 270 -VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDE----------TVKLALDMLDDFSGEARKYAI 338 (540)
Q Consensus 270 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~~a~~~~~~m~~~~~~~~~ 338 (540)
|..+ ++|.-...-. ..+..+..-|-++=-.+++... .++...+.+.+.-+....+ .
T Consensus 192 vY~il----g~cD~~~~~~--------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~ 258 (613)
T PF04097_consen 192 VYKIL----GRCDLSRRHL--------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-G 258 (613)
T ss_dssp HHHHH----HT--CCC-S---------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHHH----hcCCccccch--------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-c
Confidence 2222 2222111000 0111222222222222222111 1222333333333332332 1
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 042609 339 KPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-LKPDVYTYTGLMSG 417 (540)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~ 417 (540)
.........+.-.|+++.|.+.+-+. .+...+.+++.+.+.-|+-.+-.+... ..+.... -.|...-+..||..
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 11223455666789999999888772 223456666665555443322222211 2222211 01122567888888
Q ss_pred HHh---cCCHHHHHHHHHHHHHCC
Q 042609 418 YAN---GGQMEEACEILNEAKKNH 438 (540)
Q Consensus 418 ~~~---~g~~~~A~~~~~~m~~~g 438 (540)
|.+ ..+..+|.+.+-.+....
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHHhccCHHHHHHHHHHHHHcC
Confidence 876 457788888887776653
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.76 E-value=5.7 Score=30.12 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 042609 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 215 ~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 259 (540)
++.+-++.+...++.|+.......+++|-+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555666666677777777777777777777777777777665
No 294
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.39 E-value=4.9 Score=30.77 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 215 ~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
+..+-++.+...++.|++......+++|-+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666667777777777777777777777777777766543
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.35 E-value=47 Score=33.16 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=79.9
Q ss_pred cCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhc---CChhHHHHHHHHHHHCCCCCCHHH----HHHHHHH
Q 042609 350 RMKD-VHGAKTLLSKMISEGPPPGNAVFNSVI----SAYSKA---GDMTPAMEMLKLMRSRGLKPDVYT----YTGLMSG 417 (540)
Q Consensus 350 ~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~ 417 (540)
+.|. -++|.++++.+.+. -+-|...-|.+. .+|.++ ..+..-..+-+-+.+.|+.|-.+. -|.|-.+
T Consensus 391 ~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 4444 67788888887763 122433333322 233322 234444444555566788765443 3333332
Q ss_pred --HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 418 --YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNK 483 (540)
Q Consensus 418 --~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 483 (540)
+..+|++.++.-.-.-+.+ +.|++.+|..+.-......++++|..++..+ +|+..++++
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3467888888766555555 4799999999999999999999999999875 577777664
No 296
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.18 E-value=36 Score=31.67 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKL----MRSRGLKPDVYTYTGLM-SGYANGGQMEEACEILNEAKK----NHSRLSPVTYH 447 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~ 447 (540)
.-+|..+.+.|++.+|+.+... +++-.-+|+..+...+= .+|-...++.++..-+..... .-|+|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4577788888888888877544 34444455555444332 234444455544444433322 12445444444
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHH
Q 042609 448 TLIRGY--CKLEEFDCALKLLNEMK 470 (540)
Q Consensus 448 ~li~~~--~~~g~~~~A~~~~~~m~ 470 (540)
-|+.+- |...++.-|..+|-+..
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHH
Confidence 444442 33345556666655554
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.96 E-value=2.8 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777777888888888888888877664
No 298
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=41 Score=31.97 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHH----
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKK----NHSRLSPVTYHTLIRG-YCKLEEFDCALKLLNEMKDVGVQPNVD---- 479 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 479 (540)
..+.....-||+.|+.+.|.+.+.+..+ .|.+.|...+.+=+.. |....-+.+-++..+.+.+.|-..+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3444555567777777777766655443 3555665554433322 333333444555555555555444332
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C--CCCcHHHHHHHHHHHHHHHhh
Q 042609 480 EYNKLIQSLCLKALDWRTAEKLLEDMRLK----G--LHLNGITRALIRAVKELEEDA 530 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A~~l~~~m~~~----g--~~p~~~t~~ll~a~~~l~~~~ 530 (540)
+|-.+ ||..-.++.+|-.+|-+.... . --++.++|.++-++-.+++..
T Consensus 185 vY~Gl---y~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~d 238 (393)
T KOG0687|consen 185 VYQGL---YCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVD 238 (393)
T ss_pred HHHHH---HHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccch
Confidence 23322 233344567776666555422 0 113445555555555554433
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.13 E-value=28 Score=29.74 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 218 EVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 218 ~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+..+.+.+.|++|+...|..+++.+.+.|++... ..++..++-+|.......+-.+.. ....+.++=-.|..+=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 4445555566777777777777777777765543 333444554554444333322211 1222222222222110
Q ss_pred CCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 298 MYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
...+..++..+... |++-+|+.+.+..... +......++.+-.+.++...=..+|+-..+
T Consensus 89 ----~~~~~~iievLL~~-g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSK-GQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhHHHHHHHHHhC-CCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01233344444444 7777777776654221 233345566666666665554444444443
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.97 E-value=39 Score=31.15 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhCCchHHHHHHHHHHhHhcc--
Q 042609 262 GSLPDSEKVGKIISWF-CKGGKAKEAHVVYTLAREKKMYPPQSVVA-----FLISSLCQEDETVKLALDMLDDFSGEA-- 333 (540)
Q Consensus 262 g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~ll~~~~~~~~~~~~a~~~~~~m~~~~-- 333 (540)
+-+||+..-|..-..- .+..+.++|..-|++..+.. +...-|. -+|...++. +++++..+.|.+|...-
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l-~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRL-GNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHH
Confidence 4456655444322111 22335666666666666533 2222222 244444554 55666666555554210
Q ss_pred ---CCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 334 ---RKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 334 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
...+..+.|++++......+.+--..+++
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYe 129 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYE 129 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 11123334555555444444444444443
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.95 E-value=3 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777777777777777777654
No 302
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.79 E-value=44 Score=35.31 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH--
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPNVD-- 479 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-- 479 (540)
.+.....-++..|.+.|-.+.|..+.+.+-..-. ...-|..-+.-+.++|+...+..+-+.+.+. |...+..
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 3555666677777777777777777766554321 2334555566666777766655555544422 2111111
Q ss_pred -----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 042609 480 -----------------EYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRAL 519 (540)
Q Consensus 480 -----------------~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~l 519 (540)
+|.-+... .+.|++.+|.+.+-.+.+.++.|...-..|
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~--~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~L 535 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYEL--YDEGDFREAASLLVSLLKSPIAPKSFWPLL 535 (566)
T ss_dssp ---------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHCCCCCcHHHHHHH
Confidence 11222211 245788888888888888888887665533
No 303
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.72 E-value=42 Score=31.39 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
++.....|..+|.+.+|.++.+....-+ +.+...|-.|+..++..|+--.|..-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556666777777776666665542 2355666666667776666555555555443
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.49 E-value=60 Score=32.98 Aligned_cols=177 Identities=10% Similarity=0.110 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 302 QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 302 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
.....+++.-+..+ ..+.-.+.+-.+|...|- +...|..++..|... ..++-..+|+++.+..+. |++.-..|..
T Consensus 66 d~~l~~~~~~f~~n-~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 66 DSCLVTLLTIFGDN-HKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred chHHHHHHHHhccc-hHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33444455554444 455555666666665442 345566777777766 556667777777665433 3444444444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKP--D---VYTYTGLMSGYANGGQMEEACEILNEAKKN-HSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p--~---~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 455 (540)
-|-+ ++.+.+..+|.+...+-+.- + ...|.-|+.. -..+.+....+...+.+. |..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 66677777776665542210 0 1133333331 134555555555555542 333344555666666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
..++++|++++..+.+.+ ..|...-..++..
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 777777777777766553 2244444455544
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.47 E-value=35 Score=35.24 Aligned_cols=28 Identities=18% Similarity=-0.044 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
..-|..|.++..+.|++..|.+.|.+..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3445555555555555555555554433
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.07 E-value=2 Score=25.55 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 042609 442 SPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~ 463 (540)
|...|+.+...|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666666666666666654
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.85 E-value=3.9 Score=25.10 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777777655
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.47 E-value=33 Score=29.39 Aligned_cols=122 Identities=10% Similarity=0.117 Sum_probs=53.1
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH--HHhcCCH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNA-VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY-TYTGLMSG--YANGGQM 424 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~~ 424 (540)
++.++.++|+.-|..+.+.|...-.. .--.+.......|+...|...|+++-.....|-.. -.-.|=.+ +..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555566666666665554331111 11112223445556666666666655443333222 11111111 2344555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
++...-.+-+...+-+.-...-..|--+-.+.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5544444444433322222333344444445555555555555544
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.10 E-value=17 Score=27.97 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+..+-++.+....+.|++....+.+++|-+.+++.-|.++|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555554
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.54 E-value=23 Score=26.96 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
+.-++.+-++.+......|+.....+.+++|.+.+++..|.++|+-++.+ +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44455555666666667777777777777777777777777777766632 1123345555543
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.05 E-value=4.8 Score=23.34 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
..|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777777788888888887777653
No 312
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.01 E-value=49 Score=33.20 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSE--KVGKIISWFCKGGKAKEAHVVYT 291 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~ 291 (540)
.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 344445555554 334444455444322 11223444556666665544443
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.97 E-value=29 Score=30.55 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 212 KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET---GSLPDSEKVGKIISWFCKGGKAKEAH 287 (540)
Q Consensus 212 ~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~ 287 (540)
.-+.|.+.|-.+...+.--++.....+...|. ..+.+++.+++...++. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44677888878877765555555555555555 56677777777777654 23567788888888888888877764
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.90 E-value=62 Score=31.48 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 371 PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP---DVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
....+|..+...+.+.|+++.|...+..+...+... +....-.-....-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777888888888888888888777643211 223333344455567777888888877776
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.60 E-value=0.67 Score=38.66 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=49.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG 422 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 422 (540)
.+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 345566666777777777777776555556677777777777777767776666511 1122344555555666
Q ss_pred CHHHHHHHHHH
Q 042609 423 QMEEACEILNE 433 (540)
Q Consensus 423 ~~~~A~~~~~~ 433 (540)
.+++|.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 66555555544
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.32 E-value=0.57 Score=39.09 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=60.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
.+|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++...+++... + .-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence 3567777888899999999999887666678889999999999988777777776211 1 22234566666777
Q ss_pred CHHHHHHHHHHHH
Q 042609 458 EFDCALKLLNEMK 470 (540)
Q Consensus 458 ~~~~A~~~~~~m~ 470 (540)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777776666543
No 317
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.94 E-value=5.6 Score=23.18 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+|..+...|...|++++|+..|++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 34444455555555555555555444
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.79 E-value=65 Score=33.41 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=38.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 385 KAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALK 464 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 464 (540)
+.|+++.|.++..+.. +..-|..|-.+..+.+++..|.+.|.+... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4555555555544332 445566666666666666666666555433 2334445555555554444
Q ss_pred HHHHHHHCC
Q 042609 465 LLNEMKDVG 473 (540)
Q Consensus 465 ~~~~m~~~g 473 (540)
+-....+.|
T Consensus 714 la~~~~~~g 722 (794)
T KOG0276|consen 714 LASLAKKQG 722 (794)
T ss_pred HHHHHHhhc
Confidence 444444443
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.66 E-value=14 Score=32.81 Aligned_cols=127 Identities=19% Similarity=0.113 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH--SRLSPVTYHTLIRG 452 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~ 452 (540)
|.+.-|+.+.+.+.+.+|+...++-++... -|..+-..++..||-.|++++|..-++-.-+.. ..+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567788889999999999887777632 366778888999999999999998888776643 23345677777765
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCC
Q 042609 453 YCKLEEFDCALKLLNEMKDVGVQ------PNVDEYNKLIQSLCLKAL-DWRTAEKLLEDMRLKGLHL 512 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~------p~~~~~~~ll~~~~~~~g-~~~~A~~l~~~m~~~g~~p 512 (540)
- .+-++...-+.. |...-...++.++..+.+ .-+.+..+-+...+.+..|
T Consensus 82 e----------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 E----------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred H----------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2 222223222222 333434455555544444 4344555556666665444
No 320
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=77.23 E-value=67 Score=34.47 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=64.8
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 390 TPAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 390 ~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
++....+... ...|+..+......|+... .|++..|..+++++...|- |.+. .+....
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~-----------------g~It--~e~V~~ 239 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS-----------------GKVA--ENDVRQ 239 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC-----------------CCcC--HHHHHH
Confidence 4444444443 3446766766666666544 5788888888776654320 1111 111112
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHhh
Q 042609 469 MKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDA 530 (540)
Q Consensus 469 m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~~~ 530 (540)
|. |. .+......|+.++. .++...+++++++|...|+.+....-.|+..++.+--..
T Consensus 240 lL--G~-~d~~~If~LldAL~--~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~ 296 (709)
T PRK08691 240 MI--GA-VDKQYLYELLTGII--NQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQ 296 (709)
T ss_pred HH--cc-cCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 22 11 23445556666653 467788888888888888877766666666665554433
No 321
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.19 E-value=84 Score=31.53 Aligned_cols=212 Identities=14% Similarity=0.073 Sum_probs=101.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhCC
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEK--VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS--VVAFLISSLCQED 316 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~ 316 (540)
..++.|+.+.+ +.+++.|..++... ..+.+...+..|+.+-+. .+.+.|..|+.. ...+.+...+..
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~- 78 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEE- 78 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHC-
Confidence 33445555443 44445565555432 234455666778776443 344455444322 111233333444
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAV--FNSVISAYSKAGDMTPAME 394 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~ 394 (540)
|+.+.+..+++.-.......+.... +.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 7777766655432111001111112 3344445566654 4555556666655332 1233444556777665444
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 042609 395 MLKLMRSRGLKPDV---YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVT---YHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 395 ~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
+ .+.|..++. .-++.| ...+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+ +.+.
T Consensus 154 L----l~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 L----IDHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred H----HhcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 4 444443332 222233 3344556654 4555666676555432 124444445666654 4445
Q ss_pred HHHCCCCCCHH
Q 042609 469 MKDVGVQPNVD 479 (540)
Q Consensus 469 m~~~g~~p~~~ 479 (540)
+.+.|..++..
T Consensus 221 Ll~~gad~n~~ 231 (413)
T PHA02875 221 FIKRGADCNIM 231 (413)
T ss_pred HHHCCcCcchH
Confidence 55677776643
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.15 E-value=42 Score=28.01 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 421 GGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.++.+++..++..|.-. .|+. .++.. ..+...|+|++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 56666666666666553 2332 23322 2344667777777777776654
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.63 E-value=7.1 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
|..+...|.+.|++++|.+.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444444555555555555555444
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.03 E-value=1.2e+02 Score=32.55 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHH-hcCChHHHHHHHHHHhhCCCCCCHH-----HHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCC
Q 042609 196 TVEILNELIALFS-KLGKGKAAFEVFNKFGDYGCVANQE-----TYYFTIEALSRRKIFDWAWSVCEKMIETG----SLP 265 (540)
Q Consensus 196 ~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~p 265 (540)
...++-.+...+. ...+++.|...+++.....-.++-. +-..++..+.+.+... |...+++.++.- ..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4456666677666 6788999999998874432222211 2234556666666655 888888876541 112
Q ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh-CCchHHHHHHHHHHhHhcc-------
Q 042609 266 DSEKVGKI-ISWFCKGGKAKEAHVVYTLAREKK---MYPPQSVVAFLISSLCQ-EDETVKLALDMLDDFSGEA------- 333 (540)
Q Consensus 266 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~-~~~~~~~a~~~~~~m~~~~------- 333 (540)
-...+.-+ +..+...++...|.+.++.+.... ..|...++..++.+... ..+..+++.+.++++....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22223333 333334478998998888776432 12333333334433332 2244666666666653322
Q ss_pred --CCCCcccHHHHHHHHH--cCCCHHHHHHHHHHH
Q 042609 334 --RKYAIKPFSSVIRSLC--RMKDVHGAKTLLSKM 364 (540)
Q Consensus 334 --~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m 364 (540)
..|...+|..+++.++ ..|+++.+...++++
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2234455777777665 467766666665554
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.67 E-value=31 Score=30.44 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 421 GGQMEEACEILNEAKKN---HSRLSPVTYHTLIRGYCKLEEFDCA 462 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 462 (540)
..+.+++..++.+..+. +-.+|+..+.+|+..|-+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34445555555444432 1134455555555555555555544
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.10 E-value=5.6 Score=25.32 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042609 449 LIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.64 E-value=19 Score=33.59 Aligned_cols=71 Identities=10% Similarity=-0.044 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 042609 234 TYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAR-----EKKMYPPQSVV 305 (540)
Q Consensus 234 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 305 (540)
+++...+.|...|.+.+|.++.+..+... +.+...+-.|+..+...|+--.|.+-++.+. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556667777788888888777777654 3566667777778888777666666555553 23555555443
No 328
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.40 E-value=52 Score=27.36 Aligned_cols=79 Identities=10% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEG-----PPPGNAVFNSVISAYSKAGD-MTPAMEMLKLMRSRGLKPDVYTYTGL 414 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 414 (540)
.+.++.-....+.......+++.+.... -..+...|.+++.+.++..- ---+..+|+.|++.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444442110 01122334444444433332 22334444444444444444444444
Q ss_pred HHHHH
Q 042609 415 MSGYA 419 (540)
Q Consensus 415 l~~~~ 419 (540)
|.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 44443
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.17 E-value=94 Score=30.17 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP---GNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
...+|..+...+.+.|+++.|...+..+...+... .....-.-...+-..|+-.+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34568888899999999999999999887643211 223333345566678888999998888776
No 330
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=73.16 E-value=1.7e+02 Score=33.11 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHC
Q 042609 351 MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG--DMTPAMEMLKLMRSR 402 (540)
Q Consensus 351 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 402 (540)
.+++....+.+....+. ..-...-...+|.+|.+.+ ++++|+.+..++++.
T Consensus 791 ~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 791 ESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34445544444444332 1112233456677777777 778888888777765
No 331
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.10 E-value=1.6e+02 Score=32.70 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
-|..|+..|...|+.++|++++.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488999999999999999999999876
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.71 E-value=55 Score=27.26 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhccc-CCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEK-EKGVLTVEILNELIALFSKLGK-GKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
.+.++......+...-...+++.+.-.... -.+..+-.+|++++.+.++..- --.+..+|+.|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 556666655555555555555554433221 1122456678888888766655 34567777888777777888888888
Q ss_pred HHHHHhCCC
Q 042609 239 IEALSRRKI 247 (540)
Q Consensus 239 l~~~~~~~~ 247 (540)
|.++.+-..
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 887776533
No 333
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.02 E-value=1.1e+02 Score=32.49 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=54.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 479 (540)
.+.|+..+......++. ...|++..+..+++++...| .|.+ -....++|. | .++..
T Consensus 197 ~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~-----------------~~~I--t~~~V~~~L--g-~~~~~ 252 (618)
T PRK14951 197 AAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFG-----------------SGQL--QEAAVRQML--G-SVDRS 252 (618)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhc-----------------CCCc--CHHHHHHHH--c-CCCHH
Confidence 34566666665555555 33467777777665543322 0111 011122222 1 13444
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHH
Q 042609 480 EYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEE 528 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~ 528 (540)
....++.++. .|+...+++++++|.+.|..+..+.-.++..++++--
T Consensus 253 ~i~~LldaL~--~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~ 299 (618)
T PRK14951 253 HVFRLIDALA--QGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAV 299 (618)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5555665543 4567777777777777777766665566665555543
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.01 E-value=36 Score=29.38 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK-----------GKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
+++|..-|+....+.++ .-.++..+..+|...+. +++|.+.|++..+. .|+..+|+.-+..+
T Consensus 51 iedAisK~eeAL~I~P~-----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 45677778887777765 45677777776655432 55666666666554 59999999888887
Q ss_pred HhCCChhHHHHHHHHHHHCCC
Q 042609 243 SRRKIFDWAWSVCEKMIETGS 263 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~ 263 (540)
.+ |-+++.++.+.+.
T Consensus 124 ~k------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 AK------APELHMEIHKQGL 138 (186)
T ss_dssp HT------HHHHHHHHHHSSS
T ss_pred Hh------hHHHHHHHHHHHh
Confidence 53 7778888777654
No 335
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.73 E-value=1.2e+02 Score=31.40 Aligned_cols=103 Identities=10% Similarity=0.117 Sum_probs=52.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
+.+.|+..+......++... .|++..|..+++++...| .|.+. .+...+|. | .++.
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~-----------------~~~It--~~~V~~~l--g-~~~~ 246 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYG-----------------NGKVL--IADVKTML--G-TIEP 246 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcC-----------------CCCcC--HHHHHHHH--C-CCCH
Confidence 34456666665555555442 577777777776654432 01110 01111121 1 1334
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 479 DEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.....++.++. .|+.+.+++++++|...|..|......++..+..+-
T Consensus 247 ~~i~~ll~al~--~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~ 293 (509)
T PRK14958 247 LLLFDILEALA--AKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIA 293 (509)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44445555543 456666777777777777666655555555554443
No 336
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.30 E-value=91 Score=29.21 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRS----RGLKPDVYTYTG-LMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~-ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
...+..+.+-|++.++.+.+.+.+.+..+ .|.+.|+...-+ |--.|....-+++-++..+.|.+.|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 33455555566666666666555544332 244444322211 11123333344555555556665553
No 337
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=71.17 E-value=1.2e+02 Score=32.96 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 389 MTPAMEMLKLMR-SRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 389 ~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
.++..+.++.+. ..|+..+......+.. ...|++.+|+.++++....+ .|.+. .+...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~-----------------~~~It--~~~V~ 238 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYS-----------------ANEVT--ETAVS 238 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhc-----------------cCCcC--HHHHH
Confidence 344555555543 3466656655555544 33678888888877655422 01111 11112
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHhhhhc
Q 042609 468 EMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDAIEN 533 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~~~~~~ 533 (540)
.|. |. ++...+..++..+ ..|+..++++++++|...|+......-.|+..+.++--..+.+
T Consensus 239 ~~L--G~-~d~~~i~~ll~aL--~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~ 299 (830)
T PRK07003 239 GML--GA-LDQTYMVRLLDAL--AAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAP 299 (830)
T ss_pred HHh--CC-CCHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 222 21 3444455566554 3456777777777777777766555556666665554443333
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.04 E-value=73 Score=28.00 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=42.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL-----MSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-----l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
..+..+|++++|+.-++..... |....+..+ -+.....|.+++|...+....+.++ .......--+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3455566666666666555433 122222222 2334455666666666655544432 11222223345555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 042609 456 LEEFDCALKLLNEMKDV 472 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~ 472 (540)
.|+-++|..-|.+..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 66666666666665544
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.54 E-value=13 Score=21.42 Aligned_cols=27 Identities=22% Similarity=0.408 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666666666666666666553
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.39 E-value=47 Score=25.55 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=4.6
Q ss_pred hcCCHHHHHHHH
Q 042609 455 KLEEFDCALKLL 466 (540)
Q Consensus 455 ~~g~~~~A~~~~ 466 (540)
..|++++|..+.
T Consensus 51 NrG~Yq~Al~l~ 62 (115)
T TIGR02508 51 NRGDYQSALQLG 62 (115)
T ss_pred ccchHHHHHHhc
Confidence 333344433333
No 341
>PRK09687 putative lyase; Provisional
Probab=70.34 E-value=98 Score=29.21 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 371 PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLI 450 (540)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (540)
+|..+-...+.++++.|.. .|...+-...+.+ + .....+.+++..|.. +|...+..+.+. .||..+-...+
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~ 274 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAI 274 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHH
Confidence 3444455555555555553 3333333333331 1 123455555555553 455555555543 23444443334
Q ss_pred HHH
Q 042609 451 RGY 453 (540)
Q Consensus 451 ~~~ 453 (540)
.++
T Consensus 275 ~a~ 277 (280)
T PRK09687 275 DKL 277 (280)
T ss_pred HHH
Confidence 333
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.11 E-value=12 Score=21.59 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777888888877777654
No 343
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.67 E-value=1.8e+02 Score=31.93 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHhHhccCCCCccc-------HHHHHHH-HHcCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKP-------FSSVIRS-LCRMKDVHGAKTLLSKMISE----GPPPGNAVFNSVISAYS 384 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~-~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~ 384 (540)
.++++|..++.++...-..|+... ++.+-.. ....|+++++.++-+..... -..+....+..+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 678888888877665433332221 3333222 23468888888888777643 12345566777778888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHH--HHhcCCH--HHHHHHHHHHHHCC--CC----CCHHHHHHHHH
Q 042609 385 KAGDMTPAMEMLKLMRSRGLKPDVYT---YTGLMSG--YANGGQM--EEACEILNEAKKNH--SR----LSPVTYHTLIR 451 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~--~~~~g~~--~~A~~~~~~m~~~g--~~----p~~~~~~~li~ 451 (540)
-.|++++|..+..+..+..-.-+... |..+..+ +-..|.. .+....|....... -+ +-..++..++.
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 88999999988876554322223332 3333222 3455632 23333333332221 01 22345556666
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 042609 452 GYCKLEE-FDCALKLLNEMKDVGVQPNVDEYN--KLIQSLCLKALDWRTAEKLLEDMRLKGLHL 512 (540)
Q Consensus 452 ~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p 512 (540)
++.+..- -.++..-+.--......|-...+. .|.... ...|+.++|...++++......+
T Consensus 589 ~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~-~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 589 AWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE-FLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhcCC
Confidence 6655221 122222222222222222222121 333333 36889999999999887554443
No 344
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.60 E-value=1.4e+02 Score=30.65 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 442 SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+...+..++......+....|+.++.+|.+.|..|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 33444444444444444455566666666555543
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.57 E-value=49 Score=25.48 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
.-++|..+-+.+...+.. ....-.+=+..+.+.|++++|..+.+.+ +.||...|-+|-.. +.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 357888888888776432 3333333456688999999999888765 57999998877654 8888888888888
Q ss_pred HHHHCCCCCCHHHHH
Q 042609 468 EMKDVGVQPNVDEYN 482 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~ 482 (540)
+|...| .|....|.
T Consensus 93 rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASG-DPRLQTFV 106 (115)
T ss_pred HHHhCC-CHHHHHHH
Confidence 888776 34444443
No 346
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.92 E-value=1.2e+02 Score=29.54 Aligned_cols=56 Identities=16% Similarity=0.030 Sum_probs=28.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYG-----CVANQETYYFTIEALSRRKIFDWAWSVCEK 257 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g-----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 257 (540)
+|..++...+.++++++.|+...+.- -......|..+-..+.+..++++|.-+..+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 34455555556666666666653311 011223455566666666666665544443
No 347
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.11 E-value=85 Score=27.61 Aligned_cols=88 Identities=14% Similarity=-0.012 Sum_probs=59.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT-----IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK 279 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l-----l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 279 (540)
..+...|++++|+.-++..... |....+..+ .+.....|.+++|...++.....+. .......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3567788888888888877653 333333333 4456677888888888877665543 22333445577888
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 042609 280 GGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 280 ~g~~~~A~~~~~~m~~~~ 297 (540)
.|+-++|..-|+.....+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 888888888888877765
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.96 E-value=9.7 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=16.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 273 IISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
|..+|...|+.+.|..+++++...+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556667777777777776666443
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.91 E-value=8.9 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=9.1
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 042609 451 RGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+|.+.|++++|.+.|++++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33444444444444444444
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=67.55 E-value=8.1 Score=21.12 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=9.0
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 042609 448 TLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~ 466 (540)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444555555554444
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.23 E-value=19 Score=26.27 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=27.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHH
Q 042609 350 RMKDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEM 395 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~ 395 (540)
...+.++|+..|....+.-..+. -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777665432222 23556667777777777766655
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.13 E-value=20 Score=26.08 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSP--VTYHTLIRGYCKLEEFDCALKL 465 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~ 465 (540)
...+.++|+..+....+.-..+.. .++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544222111 3445555556666655555444
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.02 E-value=65 Score=30.01 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCChhHHHHHH
Q 042609 339 KPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK-----AGDMTPAMEML 396 (540)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~g~~~~A~~~~ 396 (540)
.....-|-.|.+.+.+..+.++-..-....-+-+...|.++++.|.. .|.+++|+++.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33455566677777777777777666644223334456666666554 57888887776
No 354
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.71 E-value=1.8e+02 Score=30.23 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=48.5
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------------HHHHHHHHHHhc
Q 042609 390 TPAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV------------TYHTLIRGYCKL 456 (540)
Q Consensus 390 ~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------~~~~li~~~~~~ 456 (540)
++....+... .+.|+..+......++... .|++..|...++.+...+-..+.. ....+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 4445555443 4557777776666666543 588888888888876553222221 122233333 44
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 042609 457 EEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~ 475 (540)
++.++|+.+++++...|..
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 6677777777777766644
No 355
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.58 E-value=44 Score=26.89 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 215 ~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
+..+-++.+...++.|+.......+++|-+.+++..|.++|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455666667777888888888888888888888888888877654
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.80 E-value=1.2e+02 Score=28.00 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhCCChhHHHHHHHHHHHC---CCC--
Q 042609 194 VLTVEILNELIALF-SKLGKGKAAFEVFNKFGDYGCVANQE---TYYFTIEALSRRKIFDWAWSVCEKMIET---GSL-- 264 (540)
Q Consensus 194 ~~~~~~~~~li~~~-~~~g~~~~A~~~f~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~-- 264 (540)
.||+..=|..-..- .+...+++|+.-|.+..+..-..... +...+|....+.+++++....|.+|+.. .+.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 36666554433221 24458899999999987643233333 4456788888888888888888887542 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYT 291 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (540)
-+....|++++......+.+-....|+
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYe 129 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYE 129 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 233445666666555555554444444
No 357
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=63.04 E-value=1.4e+02 Score=33.16 Aligned_cols=29 Identities=3% Similarity=0.100 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
...++++.. .|+...++.+++++.+.|..
T Consensus 251 I~~lidAL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 251 IDEAVDALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 334455544 46777888888888877664
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.24 E-value=1.2e+02 Score=27.28 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=54.0
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR--GLKPDVYTYTGLMSG 417 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~ 417 (540)
|.+.-++.+.+.+.+.+++...++-++.+ +.|..+-..+++.||-.|++++|..-++-.-+. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566777888888888888888777653 346666677888888999999887766655443 233455667776664
No 359
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=60.69 E-value=1.5e+02 Score=32.37 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcC
Q 042609 388 DMTPAMEMLKLMRS--------RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS--RLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 388 ~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g 457 (540)
..++...+++.... .++..+......++... .|++.++..+++.+..... ..+... =
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------I 235 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------I 235 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------c
Confidence 34666677766654 24555666666666543 7899999998887654210 000000 0
Q ss_pred CHHHHHHHHHHH--H-HCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 042609 458 EFDCALKLLNEM--K-DVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAV 523 (540)
Q Consensus 458 ~~~~A~~~~~~m--~-~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~ 523 (540)
..+.+.+.+.+. . +..-.+...+..+++.+. +++|.+.|+.++.+|.+.|..|..+...++...
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksi--rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSL--RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 112233333331 1 111134566777777763 788999999999999999999988877665543
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.48 E-value=56 Score=32.79 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 424 (540)
|.---..|+...|-+-+...... .+-+.......-..+...|.++.+...+...... +.....+..++++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKL 484 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 484 (540)
++|...-..|....+. ++.....-.-.--..|-++++...|++......+-+....|.+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
No 361
>PRK09687 putative lyase; Provisional
Probab=60.46 E-value=1.5e+02 Score=27.92 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKA----KEAHVVYTLA 293 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m 293 (540)
+|.......+.++...|..+ +......+.+ .+|...-...+.++++.|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 55555555666666555433 2233333332 24555555556666666652 3445555444
No 362
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.95 E-value=1.4e+02 Score=28.81 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=46.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCH-HHH
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSR---GLKPDVYTYT--GLMSGYANGGQMEEACEILNEAKK-----NHSRLSP-VTY 446 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~--~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~~~ 446 (540)
.++...-+.++.++|+++++++.+. --.|+.+.|. .+.+.+...|+..++.+++.+..+ .+++|++ ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444455666788888888887654 2245665553 344556677788888888777766 4565544 334
Q ss_pred HHHHHHH
Q 042609 447 HTLIRGY 453 (540)
Q Consensus 447 ~~li~~~ 453 (540)
..+-.-|
T Consensus 160 Y~lssqY 166 (380)
T KOG2908|consen 160 YSLSSQY 166 (380)
T ss_pred HHHHHHH
Confidence 4444433
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.38 E-value=1.4e+02 Score=31.08 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=68.3
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
.-.|+...|...+.......+.-..+....|.+.+.+.|...+|-.++.+...-. .....++..+-++|.-..++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4468888888888777644332233344556666777778888888887766554 235567777888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
+.|++..+.. ..+..+-+.|..
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHH
Confidence 9999888764 234444444443
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.23 E-value=1.6e+02 Score=27.64 Aligned_cols=87 Identities=16% Similarity=0.055 Sum_probs=48.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK---- 455 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 455 (540)
|++++..+++.++....-+--+.--+.-......-|-.|.+-+....+.++-..-....-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6777777777777655433332211122333444455567777777777666665553212223346666665543
Q ss_pred -cCCHHHHHHHH
Q 042609 456 -LEEFDCALKLL 466 (540)
Q Consensus 456 -~g~~~~A~~~~ 466 (540)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 67777777665
No 365
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.13 E-value=40 Score=21.86 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=14.4
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 491 KALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
+.|-..++..++++|.+.|+..+...+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHH
Confidence 445555555555555555555544444
No 366
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=58.91 E-value=26 Score=33.40 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVA-NQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
.-|.+.|++++|++.|..-... .| |.+++..-..+|.+...+..|+.=....+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3467788888888888776553 34 777777777788887777766655555443
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.87 E-value=64 Score=26.15 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 426 EACEILNEAKKNHSRL-SPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
.+.++|..|..+|+-- -+..|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555544322 23444444555555555555555554
No 368
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.84 E-value=2.6e+02 Score=30.09 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=26.3
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 390 TPAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 390 ~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
++..+.+... .+.|+.-+......++.. ..|++..|..+++++..
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIa 225 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 3444444443 344666666666555543 35788888877766554
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.21 E-value=24 Score=24.43 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=7.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 042609 450 IRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~ 468 (540)
|.+|...|++++|.++.++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333333333333333333
No 370
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.55 E-value=2.6e+02 Score=29.66 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=25.4
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 391 PAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 391 ~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
+..+.+... .+.|+..+......++. ...|++..|..+++++..
T Consensus 181 ~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 181 TMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHh
Confidence 334344433 33466666655555543 345778888888877654
No 371
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.42 E-value=43 Score=21.68 Aligned_cols=26 Identities=4% Similarity=0.081 Sum_probs=10.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
|...++..+++.|.+.|+.-+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444444443333
No 372
>PLN03025 replication factor C subunit; Provisional
Probab=56.91 E-value=1.9e+02 Score=27.86 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHHhC
Q 042609 425 EEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV------------GVQPNVDEYNKLIQSLCLKA 492 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------g~~p~~~~~~~ll~~~~~~~ 492 (540)
+....+-..+.+.|+..+......++..+. |+...+...++..... .-.+.......++... ..
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~--~~ 237 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC--LK 237 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH--Hc
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Q 042609 493 LDWRTAEKLLEDMRLKGLHLNGITRALIRAVKEL 526 (540)
Q Consensus 493 g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l 526 (540)
+++++|.+.+.+|...|+.|..+...+...+...
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~ 271 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY 271 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
No 373
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.26 E-value=3.2e+02 Score=30.38 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
.|.+....+-+..+++.+...+-.++....+.++.-|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355556666666666666665555566666666666653
No 374
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=56.09 E-value=2.3e+02 Score=28.93 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=50.9
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CCC----------CHHHHHHHHHHHHh
Q 042609 390 TPAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN-H--SRL----------SPVTYHTLIRGYCK 455 (540)
Q Consensus 390 ~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-g--~~p----------~~~~~~~li~~~~~ 455 (540)
++....+... .+.|+..+......++... .|++..|...++.+... + +.. .....-.|++ +..
T Consensus 183 ~el~~~L~~~~~~eg~~i~~~al~~L~~~s--~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf~L~~-ai~ 259 (451)
T PRK06305 183 ETIIDKLALIAKQEGIETSREALLPIARAA--QGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYTLDE-AIT 259 (451)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHHHHHH-HHH
Confidence 3444444443 4457766776666666543 58899999998876532 1 111 1112223444 345
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 042609 456 LEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p 476 (540)
.++.++|+.+++.+...|..|
T Consensus 260 ~~d~~~al~~l~~L~~~g~~~ 280 (451)
T PRK06305 260 TQNYAQALEPVTDAMNSGVAP 280 (451)
T ss_pred cCCHHHHHHHHHHHHHcCcCH
Confidence 678889999998888777654
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.95 E-value=1.8e+02 Score=27.31 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=40.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-------HHHHHHHhCCChhHHHHHHH
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYY-------FTIEALSRRKIFDWAWSVCE 256 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~-------~ll~~~~~~~~~~~a~~~~~ 256 (540)
.+.+..++.+++++|+..+.++...|+..|..+.| -+...|.+.|++..-.+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 45566778899999999999999989888866544 46667777777665544443
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.58 E-value=1.5e+02 Score=27.17 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=17.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
+++.+-+.++++++...+.++...+...+..-.|.|..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444444455555555555555544444444444444443
No 377
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.42 E-value=1.9e+02 Score=27.18 Aligned_cols=97 Identities=12% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc--
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLARE----KKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP-- 340 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-- 340 (540)
...+..+...|++.++.+.+.+..++..+ .|.+.|....-+-++-.+....-.++.++..+.|.+.|...+...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 34555666677777777777666554433 344444444444444444433445566666666666665433322
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHH
Q 042609 341 --FSSVIRSLCRMKDVHGAKTLLSKMI 365 (540)
Q Consensus 341 --~~~li~~~~~~g~~~~a~~~~~~m~ 365 (540)
|..+-. ....++.+|-.++....
T Consensus 195 K~Y~Gi~~--m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIFK--MMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHH--HHHHhhHHHHHHHHHHh
Confidence 222111 12345666666666654
No 378
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.75 E-value=2.5e+02 Score=28.26 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
..|+.-|.-.|++.+|.+..+++---- .-....+-+++.++- +.|+-...+.+++..-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mE-kk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVME-KKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcC
Confidence 456666666777777766666553211 113445566665554 4555455666666555554
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.65 E-value=46 Score=26.14 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888888888888888765
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.15 E-value=1.1e+02 Score=24.65 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 251 AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 251 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
..+.+..+....+.|+..+..+-++++.+.+++..|.++|+-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4566667777788999999999999999999999999999988765
No 381
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.11 E-value=1.6e+02 Score=26.04 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=60.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPD-----VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
+-+.+.|++++|..-|.+..+. +++. .+.|..=..++.+.+.++.|+.--...++.+. -......--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHh
Confidence 3466788888888888887776 2222 22344444456677888888877777777641 112222333457778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~ 479 (540)
...+++|+.=|+++.+. .|...
T Consensus 181 ~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHHh--CcchH
Confidence 88888888888888865 35544
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.57 E-value=1.1e+02 Score=26.63 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHhcccCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 174 KKEVYALWDIVKEIGEKEKGVL---TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
.+.|..+|+.+.+....+.... -...--..+..|.+.|.+++|.+++++... .|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 3567778877776433200000 001112233457777777777777777665 2444444443333333
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.08 E-value=74 Score=27.94 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 405 KPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 405 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444555555555444444444
No 384
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.82 E-value=3e+02 Score=28.71 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-CCChhHHHHHHHHHHHC-CCC-CCHHHHHHHHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR-RKIFDWAWSVCEKMIET-GSL-PDSEKVGKIISW 276 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~m~~~-g~~-p~~~~~~~li~~ 276 (540)
|......=.+.|..+.+.++|++-+. |++.+...|...+.-+.. .|+-+...+.|+..+.. |.. .....|...|..
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 44444444455556666666665553 344444444444433332 34444455555554443 211 223345555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~ 295 (540)
-..++++.....+|+++++
T Consensus 161 en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILE 179 (577)
T ss_pred HhccccHHHHHHHHHHHHh
Confidence 5555566666666665554
No 385
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.49 E-value=5.8e+02 Score=31.85 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
..+|-...+...++|+++.|...+-...+.+ -+..+.-.+.-....|+...|+.++++-.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4577778888888999999998888877765 3345666778888999999999999988743
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.45 E-value=21 Score=19.25 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
.|..+...+...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456666677777777777777766654
No 387
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.04 E-value=72 Score=21.26 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=13.5
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 491 KALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
+.|++++|.++.+.+.+. .|+....
T Consensus 13 kl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 566666666666666653 4444333
No 388
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.82 E-value=91 Score=30.78 Aligned_cols=62 Identities=8% Similarity=-0.112 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIET--GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
++.-.|++...-.|++....+.++.|.+. |-.|...+-.-+.-+|.-.|++.+|.++|-...
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777778877777777777654 333433222345567777888899988887654
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.63 E-value=41 Score=23.24 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 481 YNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 481 ~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
--.+|.+|. ..|++++|.++++++.
T Consensus 26 hLqvI~gll-qlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLL-QLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 334444554 5555555555555543
No 390
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.59 E-value=1.4e+02 Score=26.39 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=44.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 207 FSKLGKGKAAFEVFNKFGDYGCVAN-----QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 207 ~~~~g~~~~A~~~f~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
+.++|++++|..-|.+.+... ++. ...|..-..+..+.+.++.|+.-..+.++.+. ........-..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh
Confidence 345566666666666655542 221 12233333455566666666666655555432 11111112234566666
Q ss_pred CHHHHHHHHHHHHHcC
Q 042609 282 KAKEAHVVYTLAREKK 297 (540)
Q Consensus 282 ~~~~A~~~~~~m~~~~ 297 (540)
++++|+.-|..+.+.+
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 6777776666666644
No 391
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.01 E-value=2.6e+02 Score=27.50 Aligned_cols=132 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------------
Q 042609 374 AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA------------------- 434 (540)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m------------------- 434 (540)
..|..+-..+..+-..-+-..++.-+.+. +-.+.++-.+-..|.+.|+.+.|.+++++.
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~ 85 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNL 85 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q ss_pred ------HHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 435 ------KKNHSRLSPVTYHTL---IRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 435 ------~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
..-...-|...|.++ |..+.+.|.+..|+++.+-+...+..-|......+|+.|+.++++++--+++.+..
T Consensus 86 ~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 86 TSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred ccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Q ss_pred HH
Q 042609 506 RL 507 (540)
Q Consensus 506 ~~ 507 (540)
..
T Consensus 166 ~~ 167 (360)
T PF04910_consen 166 LA 167 (360)
T ss_pred hh
No 392
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.98 E-value=2.3e+02 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDCALKL 465 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~ 465 (540)
..|+..|..++.+|.-.|+...+.+-
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 35778888888888888876655533
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.96 E-value=3.9e+02 Score=29.48 Aligned_cols=227 Identities=12% Similarity=0.005 Sum_probs=123.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----CH---HHHHHHHHHHHhCCchHHHHHHHHHHhHhc----cCCCCcccHHHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYP----PQ---SVVAFLISSLCQEDETVKLALDMLDDFSGE----ARKYAIKPFSSVIR 346 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p----~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~ 346 (540)
....++++|..+..++...-..| .. ..|+.+-.......|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678999998888776432222 21 235554444444458889998887776543 22334555777778
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCh--hHHHHHHHHHHHC-----CC-CCCHHHHHH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI-----SAYSKAGDM--TPAMEMLKLMRSR-----GL-KPDVYTYTG 413 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~--~~A~~~~~~m~~~-----g~-~p~~~t~~~ 413 (540)
+..-.|++++|..+..+..+..-.-++..+.... ..+...|+. ++.+..|...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999887776542233444333222 234455632 3333334333222 11 123455666
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 042609 414 LMSGYANGG-QMEEACEILNEAKKNHSRLSPVT--YHTLIRGYCKLEEFDCALKLLNEMKDVGVQP----NVDEYNKLIQ 486 (540)
Q Consensus 414 ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~ 486 (540)
++.++.+.. ...++..-++--......|-... +..|+..+...|+.++|...++++......+ +.......+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 666666521 22222222222222221222222 2367888889999999999999887433332 3222223332
Q ss_pred HHH-HhCCCHHHHHHHHHH
Q 042609 487 SLC-LKALDWRTAEKLLED 504 (540)
Q Consensus 487 ~~~-~~~g~~~~A~~l~~~ 504 (540)
... ...|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 211 246777777766655
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.81 E-value=21 Score=29.08 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 042609 352 KDVHGAKTLLSKMISEGPPPG 372 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~p~ 372 (540)
|.-.+|..+|++|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333445555555555555544
No 395
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.94 E-value=3.5e+02 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
.+.|+..+......++.. ..|++..|...++++...
T Consensus 192 ~~egi~i~~~al~~la~~--a~G~lr~al~~Ldqliay 227 (576)
T PRK14965 192 DQEGISISDAALALVARK--GDGSMRDSLSTLDQVLAF 227 (576)
T ss_pred HHhCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 445666666655555442 347788888888776543
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.74 E-value=36 Score=32.07 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=26.7
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 406 PDVYT-YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTY 446 (540)
Q Consensus 406 p~~~t-~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (540)
||..+ |+.-|..-.+.|++++|+.++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44443 457777777777777777777777777754333333
No 397
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.55 E-value=2.7e+02 Score=28.81 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=47.3
Q ss_pred hHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH------------HHHHHHHHHHHh
Q 042609 390 TPAMEMLKL-MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS-RLSP------------VTYHTLIRGYCK 455 (540)
Q Consensus 390 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~~------------~~~~~li~~~~~ 455 (540)
++....+.. +...|+..+......+... ..|++..|...++.+...+- ..+. .....|+.+. .
T Consensus 181 ~el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~ 257 (486)
T PRK14953 181 EQIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-L 257 (486)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 344444444 3445776666666665543 45888888888887754431 1111 1122233332 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 042609 456 LEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
.|+.+.|+.+++++...|..|.
T Consensus 258 ~~d~~~al~~l~~L~~~g~~~~ 279 (486)
T PRK14953 258 ESDVDEAIKFLRTLEEKGYNLN 279 (486)
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5677777777777776665543
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.49 E-value=34 Score=32.24 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=31.2
Q ss_pred CCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 042609 195 LTVE-ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYY 236 (540)
Q Consensus 195 ~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~ 236 (540)
|+.. -||..|....+.|++++|+.++++.++.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4444 46788888888899999999998888888655444443
No 399
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.43 E-value=1e+02 Score=29.66 Aligned_cols=80 Identities=18% Similarity=0.028 Sum_probs=53.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQ 423 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 423 (540)
.+-|.+.|++++|..+|..-... .| |.+++..-..+|.+..++..|+.=....... -...+.+|.+.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHH
Confidence 47788999999999999887664 44 8888888888899988888776655554433 1234555655544
Q ss_pred HHHHHHHHHHH
Q 042609 424 MEEACEILNEA 434 (540)
Q Consensus 424 ~~~A~~~~~~m 434 (540)
..+++....+.
T Consensus 174 AR~~Lg~~~EA 184 (536)
T KOG4648|consen 174 ARESLGNNMEA 184 (536)
T ss_pred HHHHHhhHHHH
Confidence 44444433333
No 400
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=48.11 E-value=3.5e+02 Score=28.31 Aligned_cols=329 Identities=12% Similarity=0.090 Sum_probs=179.2
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhC-CCC-CCHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK-LGKGKAAFEVFNKFGDY-GCV-ANQETYYFTIE 240 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~-g~~-p~~~t~~~ll~ 240 (540)
....-.+.|..+.+.++|+.-...-+ .++..|...+..+.. .|+.+...+.|+..+.. |.. .....|-..|.
T Consensus 85 fA~~E~klg~~~~s~~Vfergv~aip-----~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 85 FADYEYKLGNAENSVKVFERGVQAIP-----LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 33334556888889999988766444 377888887776654 57888888888887653 322 23345666777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---Hhc------CCHHHHHHHHHHHHHc----CCCCCHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF---CKG------GKAKEAHVVYTLAREK----KMYPPQSVVAF 307 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~------g~~~~A~~~~~~m~~~----~~~p~~~~~~~ 307 (540)
--...+++.....++++.++. |. .-++....-| .+. ...+++.++-.....+ ...+....+..
T Consensus 160 ~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 777888899999999998874 21 1222222222 111 1223333222211110 00011122222
Q ss_pred HHHHHHhCCchHHHHHHHHHH------------------------hHhc---cC----CCCcccHHHHHHHHHcCCCHHH
Q 042609 308 LISSLCQEDETVKLALDMLDD------------------------FSGE---AR----KYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 308 ll~~~~~~~~~~~~a~~~~~~------------------------m~~~---~~----~~~~~~~~~li~~~~~~g~~~~ 356 (540)
-+.......+..+++..+..+ -... .+ .++..+|..-+.--.+.|+.+.
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 222211111222222211111 1100 01 1234457777888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+.-+|++..-. +..-...|-..+.-....|+.+-|..++..-.+-.+ .|......+.+. -..|++..|..+++.+
T Consensus 316 ~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 316 VFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 99999888632 122223444444444555888888877766555433 233333333332 3467999999999998
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHHHH----HhCCCHHHHHHHHHHHH
Q 042609 435 KKNHSRLSPV-TYHTLIRGYCKLEEFDCAL---KLLNEMKDVGVQPNVDEYNKLIQSLC----LKALDWRTAEKLLEDMR 506 (540)
Q Consensus 435 ~~~g~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~g~~~~A~~l~~~m~ 506 (540)
...- |+.. .-..-+....+.|..+.+. +++........ +......+.--+. .-.++.+.|..++.+|.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 8863 5543 2222345556788888887 44444443222 2222222222222 23567899999999998
Q ss_pred HC
Q 042609 507 LK 508 (540)
Q Consensus 507 ~~ 508 (540)
+.
T Consensus 469 ~~ 470 (577)
T KOG1258|consen 469 DI 470 (577)
T ss_pred hc
Confidence 75
No 401
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=48.11 E-value=74 Score=26.25 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHhhhhc
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDAIEN 533 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~~~~~~ 533 (540)
+......++.+. ..|+..++++.++++.+.|..|....-.++.-++.+--....+
T Consensus 14 ~~~~i~~l~~ai--~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~ 68 (143)
T PF12169_consen 14 DEEQIFELLDAI--LEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITG 68 (143)
T ss_dssp STHHHHHHHHHH--HTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSG
T ss_pred CHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555666664 4668888888888888888888877778887777766544433
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.57 E-value=56 Score=28.71 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
..+..++..+. .|++.+|..++..+...|+.++|.++.+++...
T Consensus 130 ~~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 130 YIEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444444443 689999999999999999999999999988864
No 403
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.49 E-value=1.4e+02 Score=23.45 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
..++|..+.+-+...+. -....--+-+..+.+.|++++|+ ..- .....||...|-+|-.+ +.|.-+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~--~~~~~pdL~p~~AL~a~---klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLP--QCHCYPDLEPWAALCAW---KLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHH--TTS--GGGHHHHHHHHH---HCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhc--ccCCCccHHHHHHHHHH---hhccHHHHHHHH
Confidence 34555555555555432 11122222233455666666661 111 11224566655555432 556555555555
Q ss_pred HHHHHCC
Q 042609 503 EDMRLKG 509 (540)
Q Consensus 503 ~~m~~~g 509 (540)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 5554443
No 404
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.28 E-value=3.4e+02 Score=27.95 Aligned_cols=107 Identities=15% Similarity=0.222 Sum_probs=50.6
Q ss_pred hHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 390 TPAMEMLKLMR-SRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 390 ~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
++....++... ..|+.-+......++.. ..|++..+...++.+....- +.+ -.+..++
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~-----------------~~I--t~e~V~~ 237 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSE-----------------GKI--TLETVHE 237 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcC-----------------CCC--CHHHHHH
Confidence 34444444433 34665565555555543 25677777777666443210 000 0111111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 042609 469 MKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRA 522 (540)
Q Consensus 469 m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a 522 (540)
+. |.. .......++.+. ++++.+.|..++.+|...|..|..+...++..
T Consensus 238 ~l--~~~-~~~~i~~li~si--~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~ 286 (472)
T PRK14962 238 AL--GLI-PIEVVRDYINAI--FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIED 286 (472)
T ss_pred HH--cCC-CHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 111 223344455442 45566666666666666666665555544443
No 405
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.86 E-value=2.3e+02 Score=27.45 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSP----VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSL 488 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 488 (540)
-.++...++..+++. .|+. .-|-.+++.....|.++.++.+|++.+..|..|-...-..++..+
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 345677777777765 4554 567888888888888889999999999888888777666666654
No 406
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=46.62 E-value=3.6e+02 Score=28.50 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=26.9
Q ss_pred HHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 391 PAMEMLKL-MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 391 ~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
+....+.. +.+.|+..+......++.. ..|++..|...+++....
T Consensus 182 ei~~~L~~i~~~egi~i~~~al~~ia~~--s~G~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 182 DIVERLKYILDKEGIEYEDEALRLIARA--AEGGMRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 33444443 3345776676666655553 357888888888776543
No 407
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=46.54 E-value=3.9e+02 Score=28.44 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.++.++ ..++.+.|+.++++|...|..|......++..++++-
T Consensus 251 ~Ll~AI--~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL 293 (605)
T PRK05896 251 NLIELI--QKNDIEELRNLINELESKGINFEAFCRDLINLLIDLL 293 (605)
T ss_pred HHHHHH--HCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 455443 4567777777777777777777766666666665544
No 408
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=46.49 E-value=3.6e+02 Score=28.04 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=27.2
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 390 TPAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 390 ~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
++....++.. .+.|+..+......++.. ..|++..|...++++..
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 3444444443 345766666666665553 45788888888877644
No 409
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.28 E-value=4.7e+02 Score=29.36 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 390 TPAMEMLKLMRS-RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 390 ~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
++....+..... .|+..+......++.. ..|++..|..++++....+- +..+.. .+.+++
T Consensus 181 eEI~~~L~~il~~EgI~~edeAL~lIA~~--S~Gd~R~ALnLLdQala~~~--~~It~~-------------~V~~ll-- 241 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPFEAEALTLLAKA--ANGSMRDALSLTDQAIAFGG--GQVMLT-------------QVQTML-- 241 (944)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcC--CcccHH-------------HHHHHh--
Confidence 334444444332 3555555555554432 57777777777766553221 111111 111111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 469 MKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 469 m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
|. ++......++..+ ..++.+.++.++.+|.+.|..+..+...++..++.+.
T Consensus 242 ----G~-iD~~~V~~llksI--~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDil 293 (944)
T PRK14949 242 ----GS-IDEQHVIALLKAL--TDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQIT 293 (944)
T ss_pred ----CC-CCHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 11 1333343444432 3456666666666666666666665555555555543
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.97 E-value=1.9e+02 Score=25.22 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=10.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042609 451 RGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~ 471 (540)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 344555555555555555443
No 411
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.73 E-value=4.1e+02 Score=28.47 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=21.4
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
.+.|+..+......++... .|++..|...++.+.
T Consensus 194 ~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~ 227 (614)
T PRK14971 194 SKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVV 227 (614)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 4457766665555555433 578888888776653
No 412
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.69 E-value=5.2e+02 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHH
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKL 501 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l 501 (540)
....|..++.+|....++|.+|-.+
T Consensus 1100 mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1100 MKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred ccccHHHHHHHHHHhhcchhHHHHH
Confidence 3344555666666677777776654
No 413
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=45.61 E-value=59 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
...++..+.. ++++++...+.++...|+.
T Consensus 8 i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s 36 (89)
T PF08542_consen 8 IEEILESCLN-GDFKEARKKLYELLVEGYS 36 (89)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHcCCC
Confidence 3344444322 3555555555555544443
No 414
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=44.81 E-value=4.2e+02 Score=28.37 Aligned_cols=72 Identities=7% Similarity=-0.070 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHhhCCCC
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK-------GKAAFEVFNKFGDYGCV 229 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~f~~m~~~g~~ 229 (540)
+....+.+|=.+.+.|.+++|.++.........+ ....+-..+..|+...+ -++...-|++.......
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~-----~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~ 184 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQK-----IERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTD 184 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-T-----TTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcc-----hhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3344666666788999999999988544443322 44667888888877532 34666677777655432
Q ss_pred CCHH
Q 042609 230 ANQE 233 (540)
Q Consensus 230 p~~~ 233 (540)
.|++
T Consensus 185 ~Dpy 188 (613)
T PF04097_consen 185 GDPY 188 (613)
T ss_dssp S-HH
T ss_pred CChH
Confidence 2544
No 415
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=44.58 E-value=41 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNH 438 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g 438 (540)
.++.++..+++..-+++++..+.++...|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33334444444333444444444444333
No 416
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.58 E-value=3e+02 Score=26.51 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCH----HHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMI----SEGPPPGNAVFNSVIS-AYSKAGDMTPAMEMLKLMRSRGLKPDV----YTY 411 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 411 (540)
+-....-||+.|+-+.|++.+.+.. ..|.+.|+..+.+=+. .|....-+.+-++..+.+.++|...+- .+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 4455667888888888888776654 3466667665544333 233333345555555666666654332 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
..+-. ....++.+|..+|-+...
T Consensus 187 ~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 187 QGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHhHHHHHHHHHHHcc
Confidence 33322 334577788888776654
No 417
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.07 E-value=3.8e+02 Score=27.68 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=21.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
.+.|+..+......++... .|++..|...++++..
T Consensus 189 ~~Egi~i~~eAL~lIa~~s--~GslR~alslLdqli~ 223 (491)
T PRK14964 189 KKENIEHDEESLKLIAENS--SGSMRNALFLLEQAAI 223 (491)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 3446666666665555543 4777777777776654
No 418
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.68 E-value=3.3e+02 Score=26.81 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHH
Q 042609 477 NVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEE 528 (540)
Q Consensus 477 ~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~ 528 (540)
+......++.++ ..++...+.++++++.+.|..|......++..++++--
T Consensus 245 ~~~~i~~l~~ai--~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~ 294 (363)
T PRK14961 245 NEKQSFLLTDAL--LKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISM 294 (363)
T ss_pred CHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 344444555553 34567777777777777777666665555555555443
No 419
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.63 E-value=1.1e+02 Score=23.95 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHCCC
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK--IFDWAWSVCEKMIETGS 263 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~ 263 (540)
+.++..|...|+.++|...+.++... .--......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 44566777778888888888876432 122233444444444442 23334555666665554
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.62 E-value=24 Score=28.69 Aligned_cols=30 Identities=3% Similarity=0.053 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSL 348 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 348 (540)
|.-..|-.+|+.|.+.|..||. |+.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 5556667777777777766654 56665543
No 421
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.57 E-value=3e+02 Score=26.23 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=39.4
Q ss_pred HHHHHHhcCChhHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 379 VISAYSKAGDMTPAMEML-KLMRSRGLKPDVY----TYTGLMSGYANGGQME-EACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
|.+-..+...+++..... ++|++.++ |+.. .|..++++---+.+-+ -|.+.+++ ..+|..|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHH
Confidence 333344444555555544 44555554 4543 4666666533222111 13333333 3467788888
Q ss_pred HHhcCCHHHHH
Q 042609 453 YCKLEEFDCAL 463 (540)
Q Consensus 453 ~~~~g~~~~A~ 463 (540)
++..|+.+-.+
T Consensus 331 f~s~g~sEL~L 341 (412)
T KOG2297|consen 331 FCSQGQSELEL 341 (412)
T ss_pred HhcCChHHHHH
Confidence 88888877554
No 422
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.52 E-value=2.8e+02 Score=26.01 Aligned_cols=25 Identities=16% Similarity=0.019 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHH
Q 042609 494 DWRTAEKLLEDMRLKGLHLNGITRA 518 (540)
Q Consensus 494 ~~~~A~~l~~~m~~~g~~p~~~t~~ 518 (540)
+...|...+......|.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6666777776666666655555444
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.08 E-value=57 Score=18.07 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=16.8
Q ss_pred ChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 042609 173 GKKEVYALWDIVKEIGEKEKGVLTVEILNELIA 205 (540)
Q Consensus 173 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~ 205 (540)
+.+.|..+|+.+....+. +...|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~-----~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPK-----SVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCC-----ChHHHHHHHH
Confidence 445677777776665443 5666666554
No 424
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.93 E-value=2.1e+02 Score=30.31 Aligned_cols=92 Identities=25% Similarity=0.251 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHHHHHH
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISE--GPPPGNAVFNSVISAYSKAGDMT------PAMEMLKLMRSRGLKPDVYTYTG 413 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~ 413 (540)
.+++.+|...|++-.+.++++.+... |-+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 38999999999999999999998754 33334557888888888888754 3344444333 5568889988
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042609 414 LMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
|+.+-...-.-.-..-++.+++.
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 88876654333344445555444
No 425
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.65 E-value=8.1e+02 Score=30.72 Aligned_cols=321 Identities=11% Similarity=-0.015 Sum_probs=157.5
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
+-.+.+.+.+|...|+.-.....+ . ......|-.+...|+.-+++|....+...-. .+.. +..-|......|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~-~-~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~s-l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKE-K-ETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPS-LYQQILEHEASG 1463 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccch-h-HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCcc-HHHHHHHHHhhc
Confidence 334456677888888873111100 0 0123444555558999999998888877421 1222 223344556679
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCchHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAF-LISSLCQEDETVKLALDM 325 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~~a~~~ 325 (540)
+++.|...|+.+.+.+. +...+++-++......|.++.+.-..+-..... .+....|++ -+.+-.+. ++++.....
T Consensus 1464 ~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l-~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRL-SQWDLLESY 1540 (2382)
T ss_pred cHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhh-cchhhhhhh
Confidence 99999999999988752 336667767766667777777776555443322 233334443 23333443 667766655
Q ss_pred HHHhHhccCCCCcccHHHH--HHHHHcC--CCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcCChhHH
Q 042609 326 LDDFSGEARKYAIKPFSSV--IRSLCRM--KDVHGAKTLLSKMISEGPPP---------GNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~m~~~g~~p---------~~~~~~~li~~~~~~g~~~~A 392 (540)
.. ..+..+|... .....+. .+.-.-.+..+.+.+.-+.| -...|..++....-...-...
T Consensus 1541 l~-------~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS-------DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh-------cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44 1133444443 2222222 22111112333332211111 112344444333222111111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 393 MEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNE-AKKNHSRL-----SPVTYHTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 393 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~ 466 (540)
..++..-......-+..-|-.-+..-....+..+-+--+++ +......| -..+|-...+..-+.|.++.|...+
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11110000000111111122222211111112221211221 11111111 2478889999998999999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 467 NEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 467 ~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
-...+.+ .|.... -...-+- +.|+...|+.++++-....
T Consensus 1694 l~A~e~r-~~~i~~--E~AK~lW-~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1694 LNAKESR-LPEIVL--ERAKLLW-QTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred Hhhhhcc-cchHHH--HHHHHHH-hhccHHHHHHHHHHHHHhh
Confidence 7777665 333332 2232222 6789999999999988654
No 426
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=41.64 E-value=1.1e+02 Score=21.90 Aligned_cols=37 Identities=5% Similarity=0.092 Sum_probs=26.8
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG 211 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 211 (540)
..-+.+.|..++..++.-.. +++..||++...+.++.
T Consensus 9 emlDtEmA~~mL~DLr~dek-----RsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 9 EMLDTEMAQQMLADLRDDEK-----RSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHHHHhcchhh-----cChHHHHHHHHHHHHcc
Confidence 34467788888887776444 48899999988776543
No 427
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.50 E-value=2.8e+02 Score=25.36 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=13.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 042609 419 ANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~ 439 (540)
+..+++.+|+.+|+++....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345666677777777666543
No 428
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=41.48 E-value=2.7e+02 Score=25.14 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhc
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGE 332 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 332 (540)
..+||-|.--+...|+++.|.+.|+...+.+..-+-...|.-|.-|+. |++..|.+-|...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~--gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG--GRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec--CchHhhHHHHHHHHhc
Confidence 567777777788888888888888887776533333334444444443 6777777666555544
No 429
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.02 E-value=4.3e+02 Score=28.09 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH------------HHHHHHHHHHHhc
Q 042609 391 PAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH-SRLSP------------VTYHTLIRGYCKL 456 (540)
Q Consensus 391 ~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~~------------~~~~~li~~~~~~ 456 (540)
+....+... .+.|+..+......++..+ .|++..+...++++...+ -..+. .....++++. ..
T Consensus 183 el~~~L~~~a~~egl~i~~eal~~La~~s--~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~s~~~~vf~Lidal-~~ 259 (585)
T PRK14950 183 DMAAHLRKIAAAEGINLEPGALEAIARAA--TGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEAL-LA 259 (585)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH-Hc
Confidence 344444433 4456666666666655533 478888888888765421 11111 1122233333 34
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 042609 457 EEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~ 475 (540)
|+.+++.++++.+.+.|..
T Consensus 260 ~d~~~al~~l~~L~~~g~~ 278 (585)
T PRK14950 260 KDLKAALRTLNAVAADGAD 278 (585)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 5666666666666665543
No 430
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.36 E-value=2.5e+02 Score=24.45 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCChHHH-------HHHHHHHhhCCCCCCH-HHHHHHHHHHHhCC----C-------hhHHHHHHHHHHH
Q 042609 200 LNELIALFSKLGKGKAA-------FEVFNKFGDYGCVANQ-ETYYFTIEALSRRK----I-------FDWAWSVCEKMIE 260 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A-------~~~f~~m~~~g~~p~~-~t~~~ll~~~~~~~----~-------~~~a~~~~~~m~~ 260 (540)
|...+.-+++..+..++ +.-|++.+.. .|+. .++..+-.++...+ + +++|.+.|++...
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 44444444444443444 4444444443 3543 56666666555432 1 3444444444444
Q ss_pred CCCCCCHHHHHHHHHHH
Q 042609 261 TGSLPDSEKVGKIISWF 277 (540)
Q Consensus 261 ~g~~p~~~~~~~li~~~ 277 (540)
. .|+..+|+.-+.+.
T Consensus 109 ~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 109 E--DPNNELYRKSLEMA 123 (186)
T ss_dssp H---TT-HHHHHHHHHH
T ss_pred c--CCCcHHHHHHHHHH
Confidence 3 56666666666554
No 431
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=40.30 E-value=4.9e+02 Score=27.79 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 391 PAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 391 ~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
+....+... .+.|+..+......++... .|++..+...++++...
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkli~~ 240 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIARAA--EGSVRDGLSLLDQAIAH 240 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh
Confidence 444444443 3456666666665555533 57888888888776543
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.29 E-value=4.6e+02 Score=27.46 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=28.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC-KLEEFDCALKLLNEMK 470 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 470 (540)
...+.|-+..|.++-+.+......-|+.....+|+.|+ ++.+++--++++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666666666555543334555555555554 4455555555555543
No 433
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=39.20 E-value=4.5e+02 Score=27.02 Aligned_cols=44 Identities=7% Similarity=0.031 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 424 MEEACEILNEAKKN-HSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 424 ~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+.-+.++++.|... | .|+..|.-.+..-...|..+.+-.++.+.
T Consensus 512 l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 512 LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 44444455544432 2 34444544444444555555555544443
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.94 E-value=1.9e+02 Score=24.06 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=24.5
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 223 FGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG 280 (540)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 280 (540)
+++.|++++.. -..++..+.+.+..-.|.++|+.+.+.+...+..|...-++.+...
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 34444444332 2223444444444455555555555554444444433333333333
No 435
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.72 E-value=3.9e+02 Score=26.25 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=46.2
Q ss_pred hHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--CC----------CCHHHHHHHHHHHHh
Q 042609 390 TPAMEML-KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN-H--SR----------LSPVTYHTLIRGYCK 455 (540)
Q Consensus 390 ~~A~~~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-g--~~----------p~~~~~~~li~~~~~ 455 (540)
++....+ +...+.|+..+......++.. ..|++..+...++.+... + +. +.....-.++++. .
T Consensus 170 ~~l~~~l~~~~~~~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai-~ 246 (367)
T PRK14970 170 KDIKEHLAGIAVKEGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLI-L 246 (367)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 3334334 334456776666666666653 347888888888876531 1 10 1111112233333 3
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 042609 456 LEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p 476 (540)
.|+..+|..+++.+...|..|
T Consensus 247 ~~~~~~a~~~~~~l~~~~~~~ 267 (367)
T PRK14970 247 ENKIPELLLAFNEILRKGFDG 267 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 467777777777777666554
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=38.71 E-value=1.9e+02 Score=22.66 Aligned_cols=77 Identities=17% Similarity=0.095 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
.++|..+.+.+...+. .....--+-+..+.+.|++++| +..-. ....||...|-+|-. .+.|..+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4555555555555533 1222233334445566666666 11111 123456666555443 266666666666665
Q ss_pred HHHC
Q 042609 469 MKDV 472 (540)
Q Consensus 469 m~~~ 472 (540)
+...
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 5544
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.06 E-value=2.4e+02 Score=25.98 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
.+...|.+.|++++|.++|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555666666666666666553
No 438
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=38.04 E-value=3.7e+02 Score=25.81 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+.+.+.|+..+......|+..+. +++..+..-++++
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL 176 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAVG--NDSRRLYNELEKL 176 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHH
Confidence 44555676666666666666543 3454444444443
No 439
>PRK09857 putative transposase; Provisional
Probab=37.73 E-value=2.3e+02 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=10.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 451 RGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
.-+.+.|.-+++.++..+|...|+.
T Consensus 248 EqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 248 ERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333333334444444555444443
No 440
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.37 E-value=1.6e+02 Score=23.15 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 270 VGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777788888888888877777655
No 441
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.32 E-value=85 Score=33.19 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 231 NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLA 293 (540)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (540)
+...-.-++..|.+.|..+.|.++++.+-..-. ...-|..-+..+.++|+...+..+-+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444455566666666666666666665533311 1223444455555555555544444433
No 442
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.94 E-value=1.8e+02 Score=21.81 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
|+.+.|.+++..+. .| ...|...+.++...|+-+-|
T Consensus 50 g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 50 GNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred CcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 55555555555555 32 23455555555555554433
No 443
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=36.71 E-value=4.1e+02 Score=25.84 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=51.1
Q ss_pred hHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC------------HHHHHHHHHHHHh
Q 042609 390 TPAMEMLKL-MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR-LS------------PVTYHTLIRGYCK 455 (540)
Q Consensus 390 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~------------~~~~~~li~~~~~ 455 (540)
++..+++.. +.+.|+..+......++.. ..|++..+...++++...+-. .+ ......++++..
T Consensus 179 ~~l~~~l~~~~~~~g~~i~~~a~~~l~~~--~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~- 255 (355)
T TIGR02397 179 EDIVERLKKILDKEGIKIEDEALELIARA--ADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL- 255 (355)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 444444444 3455777776666666653 357888888888776653211 11 122334455554
Q ss_pred cCCHHHHHHHHHHHHHCCCCC
Q 042609 456 LEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p 476 (540)
.|+..+|.++++.+.+.|..|
T Consensus 256 ~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 256 NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 478888999998888777654
No 444
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.41 E-value=4.4e+02 Score=26.11 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCC-CCCH
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSV------------ISAYSKAGDMTPAMEMLKLMRSRGL-KPDV 408 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~ 408 (540)
..+...+-..|++++|..++.+.. +.||.+| ++.|...+++-.|.-+-+++..+-+ .||.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345566677888888888877653 3344333 2345556666666655555543322 2343
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 409 -----YTYTGLMSGYANGGQMEEACEILNEAKKNH 438 (540)
Q Consensus 409 -----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g 438 (540)
.-|+.++......+.+=.+.+.++.+-..|
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 246777777777777777777777776654
No 445
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.14 E-value=1.7e+02 Score=22.84 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
..+|..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34455555556666666655553
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.87 E-value=1.6e+02 Score=24.58 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
+.+.+.|++++. --..++..+.+.++.-.|.++++++.+.+...+..|...-++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444444332 233344444444444555555555555544444444333344444444
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.57 E-value=1.9e+02 Score=26.67 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 413 GLMSGYANGGQMEEACEILNEAKK----NH-SRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 413 ~ll~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
.|..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556667777777777766532 12 1233344555556666666666655554443
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.52 E-value=4.6e+02 Score=26.12 Aligned_cols=13 Identities=15% Similarity=0.531 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHH
Q 042609 494 DWRTAEKLLEDMR 506 (540)
Q Consensus 494 ~~~~A~~l~~~m~ 506 (540)
++...+++++++.
T Consensus 319 ky~~cl~~L~~~k 331 (466)
T KOG0686|consen 319 KYASCLELLREIK 331 (466)
T ss_pred hHHHHHHHHHHhc
Confidence 4555555555554
No 449
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=35.09 E-value=5.7e+02 Score=27.06 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=26.2
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 391 PAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 391 ~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
+....+... .+.|+..+......++.. ..|++..|...++++..
T Consensus 182 el~~~L~~i~~~egi~id~eAl~lLa~~--s~GdlR~alslLdklis 226 (563)
T PRK06647 182 KIYNMLKKVCLEDQIKYEDEALKWIAYK--STGSVRDAYTLFDQVVS 226 (563)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHh
Confidence 333344333 345666666666666553 34788888888877654
No 450
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.89 E-value=2.5e+02 Score=22.78 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=23.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 042609 462 ALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLE 503 (540)
Q Consensus 462 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~ 503 (540)
..++|..|...|+-.....|-.--..+....|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666666555544444333344445666666666654
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.76 E-value=2.5e+02 Score=22.73 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 250 WAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTL 292 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (540)
.+.++|..|...|+.-. +..|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777665433 44566666777777777777777764
No 452
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.49 E-value=3.4e+02 Score=24.35 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 460 DCALKLLNEMKDVGV----QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
..|.+.|.+..+..- .-+..+..-|+.-+..+.|+.++|.+.|.++...+-...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 356666666553221 224455666777777788888888888888877654443
No 453
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.67 E-value=4.3e+02 Score=25.22 Aligned_cols=143 Identities=16% Similarity=0.252 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD--------- 388 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------- 388 (540)
-..-|.++|+....+ ...+.++..+.+.+.-+.-.++ ++|+-.+-......+...|-
T Consensus 182 ~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~ 247 (412)
T KOG2297|consen 182 ALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRN 247 (412)
T ss_pred HHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHH
Confidence 345566777766543 3366777777665544433332 46666655555555544443
Q ss_pred --hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 042609 389 --MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEIL-NEAKKNHSRLSP----VTYHTLIRGYCKLEEFDC 461 (540)
Q Consensus 389 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~-~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~ 461 (540)
...|.+-++.. |..-..+...+++..... ++|++.++ |++ ..|..++++- .|.+
T Consensus 248 q~~~~a~kElq~~--------------L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsav----eWnK 308 (412)
T KOG2297|consen 248 QQSEGARKELQKE--------------LQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAV----EWNK 308 (412)
T ss_pred HHHHHHHHHHHHH--------------HHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHH----hhch
Confidence 33333222222 222223344555555554 45666654 565 4577776653 3333
Q ss_pred HHHHH-HHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 042609 462 ALKLL-NEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAE 499 (540)
Q Consensus 462 A~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~ 499 (540)
-.++. ++.++ ...+|.-|+.++| ..|+.+-.+
T Consensus 309 keelva~qalr-----hlK~yaPLL~af~-s~g~sEL~L 341 (412)
T KOG2297|consen 309 KEELVAEQALR-----HLKQYAPLLAAFC-SQGQSELEL 341 (412)
T ss_pred HHHHHHHHHHH-----HHHhhhHHHHHHh-cCChHHHHH
Confidence 22222 22222 2456888999998 677655443
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.63 E-value=4.2e+02 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHH
Q 042609 371 PGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A 392 (540)
-|...|..++.+|.-.|+...+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHH
Confidence 3445555555555555544433
No 455
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.41 E-value=1.5e+02 Score=19.77 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 486 (540)
.+.-++.+.|++++|.+..+.+++. .|+..-...|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 3556777888888888888887764 566655554443
No 456
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=32.47 E-value=5.1e+02 Score=25.69 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=47.8
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCC-CCCH-----H
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFSSV------------IRSLCRMKDVHGAKTLLSKMISEGP-PPGN-----A 374 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~-~p~~-----~ 374 (540)
....|+.++|..++.+.. +.||.++ ++.|.-.+++-.|.-+-+++...-+ .||. .
T Consensus 141 ke~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 141 KEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 333466666666655432 3344333 4455566666666666555543322 2333 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
-|+.||......+.+=.+-+.++.....
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 4677777777777777777777777655
No 457
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.97 E-value=4.3e+02 Score=24.74 Aligned_cols=86 Identities=14% Similarity=-0.021 Sum_probs=40.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHc----C
Q 042609 279 KGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE---DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCR----M 351 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 351 (540)
..+++..+...+......+.. .....+...+... ..+..+|.+.|+...+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 456677777777766553311 1111111111111 13456666666655554422 223334344433 2
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 042609 352 KDVHGAKTLLSKMISEGPP 370 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~ 370 (540)
.+..+|...+++..+.|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh
Confidence 3556666666666655543
No 458
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.91 E-value=1.3e+02 Score=21.02 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
+...++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 445666666666666666667777777666663 455555555555544
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.65 E-value=2.9e+02 Score=23.72 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=26.4
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 224 GDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
+..|++.+..-. .++..+......-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444443332 2333333333344455666666555544454444444444444443
No 460
>PRK09857 putative transposase; Provisional
Probab=31.52 E-value=4.6e+02 Score=24.92 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
+..++.-..+.|+.++..++++.+.+. +.......-++..-+. +.|.-+++.++..+|...|+..+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~-qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLR-QEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 445555555667777777777766654 2233334445555554 556667789999999999988763
No 461
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=31.48 E-value=5.3e+02 Score=25.61 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=25.2
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCChhHHHHHHHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNA--VFNSVISAYSK--AGDMTPAMEMLKLMRS 401 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 401 (540)
.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666554 333333 33333333332 3345555555555443
No 462
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.35 E-value=6e+02 Score=26.45 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNA---VFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
...++.-|.+.+++++|..++..|.=. .. ... ..+.+++.+.+..--++.+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~-~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWN-TM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcc-cc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 456777888888888888888877421 11 122 2333444444544444555555555443
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.05 E-value=4.9e+02 Score=25.08 Aligned_cols=153 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 361 LSKMISEGPPPGNAVFNSVISAYSKAGD------------MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 361 ~~~m~~~g~~p~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
|++..+..+. |+.+|-.++..--..-. .+.-+.++++..+.+.. +...+..+|..+.+..+.++..
T Consensus 8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH---HCCCCCC----------HHHHHHHHHHHHH--
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIRGYCK---LEEFDCALKLLNEMK---DVGVQPN----------VDEYNKLIQSLCL-- 490 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~---~~g~~p~----------~~~~~~ll~~~~~-- 490 (540)
+.++++.... +-+...|...|+.... .-.++....+|.+.. .....-. ...+-.++.-+|.
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q ss_pred -hCCCHHHHHHHHHHHHHCCC-CCcHHH
Q 042609 491 -KALDWRTAEKLLEDMRLKGL-HLNGIT 516 (540)
Q Consensus 491 -~~g~~~~A~~l~~~m~~~g~-~p~~~t 516 (540)
++|..+.|..+++-+++.++ .|+...
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n~~~P~~~~ 192 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFNFFRPESLS 192 (321)
T ss_pred HHCCchHHHHHHHHHHHHHHcCCccccc
No 464
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.85 E-value=2.3e+02 Score=21.19 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=19.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 253 SVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 253 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
++|+.....|+..|..+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443
No 465
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.81 E-value=5.2e+02 Score=27.16 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=74.2
Q ss_pred HHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 042609 310 SSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDM 389 (540)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 389 (540)
+.|.+..|+...|.+.+.........-..+....+.+...+.|...+|..++.+..... ....-++-.+-++|.-..++
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhh
Confidence 34455568888888888776654444445567777788888888888988888877654 34556777788889999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 390 TPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
+.|++.|++..+.... +.+.-+.|..
T Consensus 693 ~~a~~~~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 9999999888776332 3344444433
No 466
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.69 E-value=2.3e+02 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
+.......|+.++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455566777777777666543
No 467
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.64 E-value=4.5e+02 Score=26.86 Aligned_cols=241 Identities=10% Similarity=0.046 Sum_probs=109.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHH-----HHhCCChhHHHHHHHHHHHCCCCCCHHHH--HHH
Q 042609 203 LIALFSKLGKGKAAFEVFNKFGDYGCVANQET--YYFTIEA-----LSRRKIFDWAWSVCEKMIETGSLPDSEKV--GKI 273 (540)
Q Consensus 203 li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t--~~~ll~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~l 273 (540)
.+...++.|+.+ +++.+.+.|..++... ..+.+.. .+..+..+ +.+.+.+.|..++.... .+.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCch
Confidence 344445666654 4555556677666432 2234444 44445443 44555666655432211 223
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCCc--hHHHHHHHHHHhHhccCCCCccc--HHHHH
Q 042609 274 ISWFC--KGGKAKEAHVVYTLAREKKMYPPQSV--VAFLISSLCQEDE--TVKLALDMLDDFSGEARKYAIKP--FSSVI 345 (540)
Q Consensus 274 i~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~--~~~li 345 (540)
+...+ ..|+.+-+.. +.+.|..++... -.+.+...+.. | ..+ +.+.+.+.|..++... -.+.+
T Consensus 110 L~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~----iv~~Ll~~g~din~~d~~g~tpL 180 (480)
T PHA03100 110 LLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLES-NKIDLK----ILKLLIDKGVDINAKNRYGYTPL 180 (480)
T ss_pred hhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHc-CCChHH----HHHHHHHCCCCcccccCCCCCHH
Confidence 33344 6666554444 344554443221 12233333443 4 333 3344445555443322 22345
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVF--------NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY---TYTGL 414 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~l 414 (540)
...+..|+.+ +.+.+.+.|..++.... ...+...+..|. ...++.+.+.+.|..++.. -.+.|
T Consensus 181 ~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL 254 (480)
T PHA03100 181 HIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL 254 (480)
T ss_pred HHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 5555666554 34444455655553210 233333444454 1234455566666655432 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 415 MSGYANGGQMEEACEILNEAKKNHSRLSPVTY--HTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 415 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
. ..+..|+. ++++.+.+.|..++.... .+-+...++.|.. ++++.+.+.|..
T Consensus 255 ~-~A~~~~~~----~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~----~iv~~Ll~~g~~ 308 (480)
T PHA03100 255 H-YAVYNNNP----EFVKYLLDLGANPNLVNKYGDTPLHIAILNNNK----EIFKLLLNNGPS 308 (480)
T ss_pred H-HHHHcCCH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCH----HHHHHHHhcCCC
Confidence 3 33445554 455556666755554221 1122333344443 455555666643
No 468
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.37 E-value=4.6e+02 Score=26.20 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDY--GCVA-NQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
.-.+.--|++...-.|+++...+..+.|.+. |-.| -.+|| .+.-+|.-.+++.+|.++|-..+-
T Consensus 234 gyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY-~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 234 GYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTY-QVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred hHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEee-ehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888899988888888888652 2222 23343 344566667888888888877653
No 469
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.21 E-value=3.7e+02 Score=28.61 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=59.5
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhcc--CCCCcccHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCCCHHHHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEA--RKYAIKPFSSVIRSLCRMKDVH------GAKTLLSKMISEGPPPGNAVFNS 378 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~ 378 (540)
.++.++..+ |++..+.++++.+...+ .+.-...||..|+...+.|.++ .+.+.+++.. +.-|.-||..
T Consensus 33 sl~eacv~n-~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYN-GDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 688888887 99999999999987543 2333445888888888988754 3444444443 6678889998
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 042609 379 VISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~ 400 (540)
|+.+-..--+-.-..-++.+..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHH
Confidence 8877655333233333444443
No 470
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.11 E-value=1.8e+02 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=16.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC
Q 042609 203 LIALFSKLGKGKAAFEVFNKFGDYG 227 (540)
Q Consensus 203 li~~~~~~g~~~~A~~~f~~m~~~g 227 (540)
+|+.+.++...++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555566667777777777777766
No 471
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.04 E-value=3.2e+02 Score=22.67 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 248 FDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 248 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
.-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4445555555555554444444444444444444
No 472
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.75 E-value=2.5e+02 Score=25.74 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=32.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 042609 414 LMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK-LEEFDCALKLLNEMK 470 (540)
Q Consensus 414 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 470 (540)
+...+-+.|+++++...++++...+...+..--+.|..+|-. .|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 444555666777777777777666655666666666666633 344455555555554
No 473
>PRK10941 hypothetical protein; Provisional
Probab=29.70 E-value=4.7e+02 Score=24.49 Aligned_cols=86 Identities=13% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSL-PDSEKVGKIIS 275 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~ 275 (540)
....+.+-.+|.+.+++++|+.+.+.+.... +.|..-+.--.-.|.+.|.+..|..=++..++.-.. |+.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q ss_pred HHHhcCCH
Q 042609 276 WFCKGGKA 283 (540)
Q Consensus 276 ~~~~~g~~ 283 (540)
.......+
T Consensus 260 ~l~~~~~~ 267 (269)
T PRK10941 260 SIEQKQIV 267 (269)
T ss_pred HHhhcCcc
No 474
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.61 E-value=3.2e+02 Score=27.73 Aligned_cols=171 Identities=18% Similarity=0.209 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------C---CCCHHHHHHHHHHHH---
Q 042609 352 KDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG------L---KPDVYTYTGLMSGYA--- 419 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~---~p~~~t~~~ll~~~~--- 419 (540)
+.+++-.++++.+.+.| .+| ....-|+.|.+.+++++|..-+++-.+.| . .-...+...++...-
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 34667777777776654 123 23344778888888888888877765532 1 112233334444321
Q ss_pred --hcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH-------HHHHCCCCCCHHHHHHHHHH
Q 042609 420 --NGGQMEEACEILNEAKKNHSRL---SPVTYHTLIRGYCKLEEFDCALKLLN-------EMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 420 --~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~-------~m~~~g~~p~~~~~~~ll~~ 487 (540)
++|. ..+..+++-+...|+.- ..++||. -|++.=-+++++..|+ ...+.|+..|..+|..|...
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgt 220 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGT 220 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCC
Confidence 2332 34566666666666432 2244443 2334434555555554 22366888788888777666
Q ss_pred HHHhCCCHHHHHHHHHHHH--HCCCCCcHHHH----------HHHHHHHHHHHhhh
Q 042609 488 LCLKALDWRTAEKLLEDMR--LKGLHLNGITR----------ALIRAVKELEEDAI 531 (540)
Q Consensus 488 ~~~~~g~~~~A~~l~~~m~--~~g~~p~~~t~----------~ll~a~~~l~~~~~ 531 (540)
+| -=-..-|..+++-+. +.|++-=.+.| .-|++++++.++-+
T Consensus 221 Lv--PPsisiav~ilE~Lla~eqGVksisvgy~Q~Gn~~QDiaai~aL~~l~~eYl 274 (480)
T TIGR01503 221 LV--PPSISNAIGIIEGLLAAEQGVKNITVGYGQVGNLTQDIAALRALEEQTNEYL 274 (480)
T ss_pred cc--ChHHHHHHHHHHHHHHHHcCCeEEEeccccCCChHHHHHHHHHHHHHHHHHH
Confidence 65 223566777777774 55665322222 35556666655443
No 475
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=28.92 E-value=5.7e+02 Score=25.14 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHhHhccC-----CCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHH
Q 042609 317 ETVKLALDMLDDFSGEAR-----KYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS----EGPPPGNAVFNS-----VISA 382 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~-----li~~ 382 (540)
+.++++++.|+....... ......|..+-..|.+..++++|.-+..+..+ .++..=..-|.. |.-+
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 667777777776544221 22345588889999999999988777665542 232211122333 3345
Q ss_pred HHhcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 383 YSKAGDMTPAMEMLKLMRS----RGLKP-DVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+-..|++-+|.+.-++..+ .|-.+ -......+...|...|+.+.|+.-|++..
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 6677888888777766533 34222 12334556667888899998888777643
No 476
>PRK13342 recombination factor protein RarA; Reviewed
Probab=28.42 E-value=6.2e+02 Score=25.43 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 352 KDVHGAKTLLSKMISEGPPPGNAVFNSVI 380 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~p~~~~~~~li 380 (540)
++.+.|...+..|.+.|..|....-..++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45555555555555555554433333333
No 477
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.30 E-value=2.3e+02 Score=20.31 Aligned_cols=37 Identities=35% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHHH-HHHHHHHHHH
Q 042609 492 ALDWRTAEKLLEDMRLKGLHLNGITRA-LIRAVKELEE 528 (540)
Q Consensus 492 ~g~~~~A~~l~~~m~~~g~~p~~~t~~-ll~a~~~l~~ 528 (540)
.|+.+.+.+++++....|+.|..+... +..++.++++
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 445566666666666556555555443 4444444443
No 478
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.20 E-value=4.4e+02 Score=23.66 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=12.4
Q ss_pred HHHhcCChHHHHHHHHHH
Q 042609 206 LFSKLGKGKAAFEVFNKF 223 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m 223 (540)
-|.....+++|++.|.-.
T Consensus 86 ~~~~~Rt~~~ai~~YkLA 103 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLA 103 (214)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 566667777777777655
No 479
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.98 E-value=8.3e+02 Score=27.03 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
.+......++.. ..|+..+|+.++++...
T Consensus 198 id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 198 FEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred CCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 344554444432 36777788877766543
No 480
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.97 E-value=7.1e+02 Score=25.95 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042609 390 TPAMEMLKLMRS-RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH 438 (540)
Q Consensus 390 ~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g 438 (540)
++....++.+.. .|+.-+...+..+.+ ...|-+.+|..+++++...|
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHcc
Confidence 344444544433 466666555554443 45677777888887777664
No 481
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=27.88 E-value=45 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=13.8
Q ss_pred cCChHHHHHHHHHHhhCC-CCCCH
Q 042609 210 LGKGKAAFEVFNKFGDYG-CVANQ 232 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g-~~p~~ 232 (540)
.-+++.|+..|.++...| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 346677777777776543 44443
No 482
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=27.81 E-value=2.1e+02 Score=19.76 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=5.6
Q ss_pred cCCHHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEM 469 (540)
Q Consensus 456 ~g~~~~A~~~~~~m 469 (540)
.|++=+|-++++++
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 34444444444443
No 483
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.48 E-value=4.3e+02 Score=23.31 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=12.9
Q ss_pred hCCCHHHHHHHHHHHHH
Q 042609 491 KALDWRTAEKLLEDMRL 507 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~ 507 (540)
+.|+++.|.++++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 46788888888887763
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.21 E-value=2.5e+02 Score=24.04 Aligned_cols=38 Identities=11% Similarity=0.029 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (540)
++.-.|.++++.+.+.+..++..|..--+..+.+.|-+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33344555555555554444444444444444444433
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.76 E-value=1.9e+02 Score=22.69 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 391 PAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
.|.++++.+.+.+...+..|....|..+..
T Consensus 18 sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~ 47 (116)
T cd07153 18 TAEEIYERLRKKGPSISLATVYRTLELLEE 47 (116)
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 344444444443333333333333333333
No 486
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.62 E-value=5.6e+02 Score=24.35 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 354 VHGAKTLLSKMISEGP----PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACE 429 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 429 (540)
.+.|.+.|+.....+. ..+......++....+.|..+.-..+++..... .+..-...++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888876422 334555566677777777766655555555533 477788899999999999998899
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 042609 430 ILNEAKKNH-SRLSPVTYHTLIRGYCKLEEF--DCALKLLN 467 (540)
Q Consensus 430 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--~~A~~~~~ 467 (540)
+++.+...+ +++.. . ..++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 999888864 44433 3 3344455434433 66666654
No 487
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.53 E-value=8.2e+02 Score=26.23 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=27.8
Q ss_pred hHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 390 TPAMEMLKLM-RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 390 ~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
++....+.+. .+.|+..+......++. ...|++..|+.+++++...
T Consensus 181 ~eL~~~L~~il~~egi~id~eal~lIA~--~s~GdlR~Al~lLeqll~~ 227 (624)
T PRK14959 181 AGLEAHLTKVLGREGVDYDPAAVRLIAR--RAAGSVRDSMSLLGQVLAL 227 (624)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHh
Confidence 3444444443 34466556666655554 3358888888888876544
No 488
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.81 E-value=7.9e+02 Score=25.76 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=27.5
Q ss_pred hHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 390 TPAMEMLKL-MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 390 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
++....+.. +.+.|+..+......++.. ..|++..|..+++++...
T Consensus 181 ~~i~~~L~~il~~egi~~~~~al~~la~~--s~Gslr~al~lldqai~~ 227 (527)
T PRK14969 181 PLIVSHLQHILEQENIPFDATALQLLARA--AAGSMRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 344434433 3445776666666655553 467888888888776543
No 489
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.71 E-value=2.9e+02 Score=20.68 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 259 (540)
|+...|..-+......+. ++ .++|+-....|+..|...|.+++..+.-.=..+...++++.|-
T Consensus 8 ~~~~~~k~~~~rk~~Ls~-eE-~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSA-EE-VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccCH-HH-HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344555555533322221 22 2667666677777777777766666555444555555555553
No 490
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=25.58 E-value=4e+02 Score=27.03 Aligned_cols=295 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 042609 213 GKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKV--GKIISWFCKGGKAKEAHVVY 290 (540)
Q Consensus 213 ~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~ 290 (540)
+|.-+++.+.+.+.| .|...-|.--..|.-...+..=.++.+.+.+.|..++..++ |+.+.-|+..|.++-..-++
T Consensus 126 fDG~leivKyLvE~g--ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 126 FDGHLEIVKYLVEHG--ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred hcchhHHHHHHHHcC--CCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHH-----cCCCHHHHHHHHHHHH
Q 042609 291 TLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLC-----RMKDVHGAKTLLSKMI 365 (540)
Q Consensus 291 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~ 365 (540)
..-.. +..+..-.+-++.+... |..+....+++ ..++...-..-+..++ +..+.-.|...|.+..
T Consensus 204 ~~ga~--i~~d~~GmtPL~~Aa~t--G~~~iVe~L~~------~~~sr~~riealEllGat~~dkk~D~~~al~~w~~aM 273 (615)
T KOG0508|consen 204 KHGAK--IDVDGHGMTPLLLAAVT--GHTDIVERLLQ------CETSRESRIEALELLGATYVDKKRDLLGALKYWRRAM 273 (615)
T ss_pred hCCce--eeecCCCCchHHHHhhh--cchHHHHHHhc------CCcchhhHHHHHHHhcccccchhHHHHHHHHHHHHHH
Q ss_pred HCCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---------------------HH
Q 042609 366 SEGPP-----PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG---------------------YA 419 (540)
Q Consensus 366 ~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---------------------~~ 419 (540)
+.... +...+. ..+.+|..........++=.-.. .||..-.-.||-- |+
T Consensus 274 e~r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~elE~lv~----D~d~~RmqaLiirerILgpsh~d~sYyir~rgavya 348 (615)
T KOG0508|consen 274 EERESDGESILEKEPL-EPVLAYGYGREVNNREELEELVE----DPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYA 348 (615)
T ss_pred HhhhhccccccccCCC-CchhhhhhhhhcCCHHHHHHHhc----ChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeec
Q ss_pred hcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHh
Q 042609 420 NGGQMEEACEILNEAKKNHSR----LSPVTYHTLIRGYCKLEEFDCALKLLNEMK----DVGVQPNVDEYNKLIQSLCLK 491 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~ 491 (540)
..|+++..+++|+...+..-+ .++.|-.++++. -++|..|+ ..|-.-....+..++..++..
T Consensus 349 d~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsF----------aelFS~mL~d~~~~g~~~~~i~~~~~~~Vl~k~ 418 (615)
T KOG0508|consen 349 DSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSF----------AELFSFMLQDFAAKGSLGTQIGFDDLMGVLTKS 418 (615)
T ss_pred CCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHH----------HHHHHHHhhhhhhcCCCCCccchHHHHHHHHHH
Q ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHhhhhccc
Q 042609 492 ALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEEDAIENGE 535 (540)
Q Consensus 492 ~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~~~~~~~~ 535 (540)
.-.++.|...-.+-. .--..+...+..+..++-+++-.-.|++
T Consensus 419 vlEvEra~~~t~~p~-d~~~~~k~l~~~lhLv~llek~~ct~e~ 461 (615)
T KOG0508|consen 419 VLEVERALALTREPL-DPAQYNKALYIILHLVCLLEKVECTPEQ 461 (615)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHhcCCChHH
No 491
>PHA02798 ankyrin-like protein; Provisional
Probab=25.56 E-value=5.5e+02 Score=26.44 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 252 WSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ--SVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 252 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
.+..+.+++.+-..+..-..++...|....+... ++.+.+.+.|..++. ....+.+..++.....+....++.+.+
T Consensus 18 ~~~v~~ll~~~~~~~~~~~~~~~~~yl~~~~~~~--~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~L 95 (489)
T PHA02798 18 LSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSPST--DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKIL 95 (489)
T ss_pred HHHHHHHHhcCChhhhcccchHHHHHHhCCCCCH--HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHH
Q ss_pred HhccCCCCccc--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042609 330 SGEARKYAIKP--FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNA--VFNSVISAYSKAGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 330 ~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (540)
.+.|..++... -.+.+...+..+.. .-.++.+.+.+.|..++.. ...+.+..+.+.|. ..-.++.+.+.+.|..
T Consensus 96 l~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~Ll~~gad 173 (489)
T PHA02798 96 IENGADINKKNSDGETPLYCLLSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKLLLEKGVD 173 (489)
T ss_pred HHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC-cchHHHHHHHHHhCCC
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 406 PDVY---TYTGLMSGYANGGQMEEACEILNEAKKNHSRLS 442 (540)
Q Consensus 406 p~~~---t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (540)
++.. .....+..+.+.+--..-.++++.+.+.|..++
T Consensus 174 in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~ 213 (489)
T PHA02798 174 INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN 213 (489)
T ss_pred cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc
No 492
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=25.52 E-value=9e+02 Score=26.35 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 195 LTVEILNELIALFSKLGKGKAAFEVFNKFGDYGC-------------VANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
.+......++... .|+...|+.+++++...|- ..+......++.++.+ ++...++.+++.|...
T Consensus 198 id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~ 274 (709)
T PRK08691 198 YEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEMAAC 274 (709)
T ss_pred cCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 4555555555443 5777777777776554321 1122333444444444 6677777777777777
Q ss_pred CCCCC
Q 042609 262 GSLPD 266 (540)
Q Consensus 262 g~~p~ 266 (540)
|+.+.
T Consensus 275 G~d~~ 279 (709)
T PRK08691 275 AVGFD 279 (709)
T ss_pred CCCHH
Confidence 66443
No 493
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.43 E-value=5.3e+02 Score=23.66 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=14.7
Q ss_pred HHHhCCchHHHHHHHHHHhHhccC
Q 042609 311 SLCQEDETVKLALDMLDDFSGEAR 334 (540)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~m~~~~~ 334 (540)
.|....+++.+|+++|++......
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334677777777777665443
No 494
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=25.40 E-value=50 Score=33.04 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=25.6
Q ss_pred HCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH
Q 042609 471 DVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 471 ~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 514 (540)
+.|+..+..+|.-+...+| - --+..|..+++.+...|...+.
T Consensus 161 e~gv~in~E~fg~l~~~l~-p-ptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 161 ENGVPINREPFGPLTGTLV-P-PSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred hcCceecccCCcCcccCcC-C-cHHHHHHHHHHHHHHccCCCCE
Confidence 5677667666666655554 2 2356677777777666655443
No 495
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.31 E-value=5.6e+02 Score=26.16 Aligned_cols=248 Identities=10% Similarity=0.098 Sum_probs=120.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCH---HHHH
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKV--GKIISW-----FCKGGKAKEAHVVYTLAREKKMYPPQ---SVVA 306 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~ 306 (540)
+.+...++.|+.+ +++.+++.|..++.... ...+.. ....|..+-+ +.+.+.|..++. ...+
T Consensus 37 t~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv----~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIV----KLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHH----HHHHHCCCCCCCCCCCCCc
Confidence 3445556667654 45556667877664332 244555 5555554443 444455544322 2233
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEARKYAIKP--FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVF--NSVISA 382 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~ 382 (540)
.+..+.....|..+-+.. +.+.|..++... -.+.+...+..|. .-.++.+.+.+.|..++.... .+.+..
T Consensus 109 pL~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~ 182 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHI 182 (480)
T ss_pred hhhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence 333332213365554443 344454443322 2344555556662 123345555667766654322 234455
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHH
Q 042609 383 YSKAGDMTPAMEMLKLMRSRGLKPDVYTY--------TGLMSGYANGGQMEEACEILNEAKKNHSRLSP---VTYHTLIR 451 (540)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~ 451 (540)
.+..|+.+ +.+.+.+.|..++.... ...+...+..|+ ...++++.+.+.|..++. .-.+.| .
T Consensus 183 A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL-~ 255 (480)
T PHA03100 183 AVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPL-H 255 (480)
T ss_pred HHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHH-H
Confidence 56666554 44455566666553211 333444445555 113445555666655443 222333 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHH
Q 042609 452 GYCKLEEFDCALKLLNEMKDVGVQPNVDE---YNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGI 515 (540)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 515 (540)
..+..|+.+ +++.+.+.|..++... .+.+..+ + +.|.. ++++.+.+.|...+.+
T Consensus 256 ~A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl~~A-~-~~~~~----~iv~~Ll~~g~~i~~i 312 (480)
T PHA03100 256 YAVYNNNPE----FVKYLLDLGANPNLVNKYGDTPLHIA-I-LNNNK----EIFKLLLNNGPSIKTI 312 (480)
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHH-H-HhCCH----HHHHHHHhcCCCHHHH
Confidence 344566643 4455556666555432 2233322 2 44443 4666777788766553
No 496
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=25.13 E-value=3.9e+02 Score=30.29 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
....+.+++++|..|...|+.... ..|-.....|.+.+.+.+|..+|+.-++.
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~ 143 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQN 143 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555543333 23334444444555555555555554443
No 497
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.93 E-value=3e+02 Score=20.64 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042609 449 LIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~ 470 (540)
+.......|+.++|...+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 4445556677777777777665
No 498
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.92 E-value=4.9e+02 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.+.-+....-...+.|++++|.+-++++.
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555556666666666666666553
No 499
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=24.90 E-value=2.5e+02 Score=28.40 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC
Q 042609 415 MSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALD 494 (540)
Q Consensus 415 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~ 494 (540)
...+...+.++.|..++.++++.. +.++..|..=..++.+.+++..|+.=+.+.++.. |+..-....=..+|.+.++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHHHh-hhhccccccc
Q 042609 495 WRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELEED-AIENGEALVE 539 (540)
Q Consensus 495 ~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~~~-~~~~~~~~~~ 539 (540)
+.+|+..|+.-.. +.|+..-. ..+.-+..+... +.+..+.+-+
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKIVSEEKFEKAILTPE 132 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHHHHHhhhhcccCCc
No 500
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.84 E-value=9.4e+02 Score=26.33 Aligned_cols=288 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
++=+.+.+.+++|..+-+......++.. --..+...|..+.-.|++++|-...-.|.. -+..-|..-+..++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~---i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFV---IKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccc---hHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALD 324 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~ 324 (540)
.++.. .++..+-......+..+|..++..+.. .+...-.++..+ ..++...-...+.+.-.+-....+-..
T Consensus 436 ~~~l~---~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~-----Wp~~Lys~l~iisa~~~q~~q~Se~~~ 506 (846)
T KOG2066|consen 436 LDQLT---DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKE-----WPGHLYSVLTIISATEPQIKQNSESTA 506 (846)
T ss_pred ccccc---hhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHh-----CChhhhhhhHHHhhcchHHHhhccchh
Q ss_pred HHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHH
Q 042609 325 MLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK------AGDMTPAMEMLKL 398 (540)
Q Consensus 325 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~------~g~~~~A~~~~~~ 398 (540)
+.+. |...|...+++.+|+.++-..+.. -..+...-..|.+...+ .-+.++|.+++-+
T Consensus 507 L~e~---------------La~LYl~d~~Y~~Al~~ylklk~~-~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLld 570 (846)
T KOG2066|consen 507 LLEV---------------LAHLYLYDNKYEKALPIYLKLQDK-DVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLD 570 (846)
T ss_pred HHHH---------------HHHHHHHccChHHHHHHHHhccCh-HHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhh
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------------hcCCHHHHHH
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC--------------KLEEFDCALK 464 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--------------~~g~~~~A~~ 464 (540)
-... .|....++.+. ...+--...+.........+-...-...|..|+ ++=++++|.+
T Consensus 571 n~d~--ip~a~Vveql~------~~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~e 642 (846)
T KOG2066|consen 571 NRDS--ISPSEVVEQLE------DNPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALE 642 (846)
T ss_pred cccc--CCHHHHHHHHh------cChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHH
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 465 LLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 465 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
+-. +.|+ |.-++..+. +.|+-.+|+++.
T Consensus 643 iC~---q~~~------~~E~VYlLg-rmGn~k~AL~lI 670 (846)
T KOG2066|consen 643 ICS---QKNF------YEELVYLLG-RMGNAKEALKLI 670 (846)
T ss_pred HHH---hhCc------HHHHHHHHH-hhcchHHHHHHH
Done!