Query 042609
Match_columns 540
No_of_seqs 674 out of 2922
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 13:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.9E-32 1.3E-36 276.7 25.1 176 341-517 29-213 (501)
2 4g26_A Pentatricopeptide repea 100.0 9.4E-32 3.2E-36 273.9 25.0 213 250-489 8-221 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.3E-28 4.3E-33 259.9 41.6 356 156-527 115-530 (597)
4 2xpi_A Anaphase-promoting comp 100.0 6E-29 2.1E-33 262.3 38.3 360 157-527 149-564 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.5E-23 8.7E-28 207.1 43.2 346 164-526 39-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5E-23 1.7E-27 204.9 41.8 344 166-526 7-352 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.2E-20 1.1E-24 188.3 39.7 328 161-505 29-406 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3.7E-20 1.3E-24 187.8 39.2 302 196-509 25-359 (450)
9 2gw1_A Mitochondrial precursor 99.9 3E-19 1E-23 184.2 34.1 341 156-510 37-480 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.7E-18 5.9E-23 178.5 35.2 351 162-526 10-462 (514)
11 3ieg_A DNAJ homolog subfamily 99.8 3.3E-17 1.1E-21 160.2 40.8 320 198-528 4-355 (359)
12 3fp2_A TPR repeat-containing p 99.8 3.8E-17 1.3E-21 169.5 39.7 338 158-513 59-496 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.1E-16 3.8E-21 156.5 38.8 309 161-485 6-347 (359)
14 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-19 5.4E-24 189.1 13.2 115 373-487 127-245 (1134)
15 3spa_A Mtrpol, DNA-directed RN 99.8 1.8E-19 6.2E-24 188.6 9.5 119 338-456 127-249 (1134)
16 3hym_B Cell division cycle pro 99.8 2.7E-16 9.2E-21 151.9 31.2 282 167-495 31-321 (330)
17 3hym_B Cell division cycle pro 99.8 2.1E-16 7.3E-21 152.6 29.7 284 196-523 21-314 (330)
18 1fch_A Peroxisomal targeting s 99.8 5.9E-17 2E-21 159.4 23.6 304 172-503 39-354 (368)
19 1fch_A Peroxisomal targeting s 99.8 2.5E-16 8.6E-21 154.9 25.9 295 207-528 35-345 (368)
20 3fp2_A TPR repeat-containing p 99.7 2.1E-15 7.1E-20 156.3 33.0 335 158-509 25-408 (537)
21 4eqf_A PEX5-related protein; a 99.7 3E-16 1E-20 154.3 24.7 277 196-504 64-352 (365)
22 3cv0_A Peroxisome targeting si 99.7 2E-15 6.7E-20 145.6 27.7 274 199-503 23-310 (327)
23 1b89_A Protein (clathrin heavy 99.7 8.2E-17 2.8E-21 156.8 16.8 286 170-508 15-308 (449)
24 4eqf_A PEX5-related protein; a 99.7 1.3E-15 4.4E-20 149.8 25.6 262 161-468 68-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.7 1.8E-15 6E-20 143.7 24.8 252 205-472 7-264 (291)
26 3cv0_A Peroxisome targeting si 99.7 3E-15 1E-19 144.3 25.3 278 161-470 24-313 (327)
27 2xm6_A Protein corresponding t 99.7 2.2E-12 7.5E-17 132.1 45.6 317 163-511 80-435 (490)
28 2xm6_A Protein corresponding t 99.7 5.4E-12 1.9E-16 129.2 47.8 307 171-509 56-397 (490)
29 3mkr_A Coatomer subunit epsilo 99.7 2.7E-14 9.3E-19 135.5 26.0 274 167-464 8-286 (291)
30 2ooe_A Cleavage stimulation fa 99.6 1.7E-12 5.9E-17 134.3 39.7 335 162-510 17-456 (530)
31 1b89_A Protein (clathrin heavy 99.6 2.5E-15 8.5E-20 146.4 13.1 260 197-504 6-265 (449)
32 3uq3_A Heat shock protein STI1 99.6 1.1E-12 3.6E-17 121.6 26.1 226 196-471 4-235 (258)
33 4g1t_A Interferon-induced prot 99.6 2E-12 6.7E-17 131.7 29.8 344 159-509 52-460 (472)
34 3uq3_A Heat shock protein STI1 99.6 1E-12 3.6E-17 121.6 25.4 232 233-509 6-237 (258)
35 4g1t_A Interferon-induced prot 99.5 1.3E-11 4.4E-16 125.6 32.3 308 196-509 50-402 (472)
36 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.2E-13 1.4E-17 125.8 18.7 250 170-431 17-269 (275)
37 2ooe_A Cleavage stimulation fa 99.5 9.7E-11 3.3E-15 121.1 37.3 218 285-508 256-492 (530)
38 2ho1_A Type 4 fimbrial biogene 99.5 8.8E-12 3E-16 115.2 25.6 200 197-401 37-237 (252)
39 1ouv_A Conserved hypothetical 99.5 6E-11 2E-15 111.2 31.3 223 196-472 5-251 (273)
40 1xi4_A Clathrin heavy chain; a 99.5 5.5E-11 1.9E-15 129.1 34.2 257 161-471 1052-1308(1630)
41 2pl2_A Hypothetical conserved 99.5 1.5E-12 5.2E-17 117.7 19.3 208 196-434 4-211 (217)
42 2vq2_A PILW, putative fimbrial 99.5 8.6E-12 2.9E-16 112.8 24.3 200 196-399 7-208 (225)
43 1ouv_A Conserved hypothetical 99.5 7.6E-11 2.6E-15 110.5 31.6 224 267-510 6-253 (273)
44 2ho1_A Type 4 fimbrial biogene 99.5 2E-11 6.9E-16 112.8 26.3 196 163-367 42-238 (252)
45 2pl2_A Hypothetical conserved 99.5 4.5E-12 1.5E-16 114.6 20.4 210 229-470 2-212 (217)
46 2vq2_A PILW, putative fimbrial 99.5 3.2E-11 1.1E-15 109.0 26.2 199 161-367 11-211 (225)
47 3u4t_A TPR repeat-containing p 99.5 1.5E-11 5.1E-16 115.0 24.4 197 199-400 5-206 (272)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-12 4.6E-17 122.3 17.1 222 209-472 17-244 (275)
49 1xi4_A Clathrin heavy chain; a 99.5 4.2E-10 1.4E-14 122.3 37.9 299 157-508 984-1309(1630)
50 3u4t_A TPR repeat-containing p 99.5 7.7E-12 2.6E-16 117.0 21.8 232 161-402 6-250 (272)
51 2q7f_A YRRB protein; TPR, prot 99.4 9.8E-12 3.4E-16 114.0 20.5 201 196-437 22-222 (243)
52 2h6f_A Protein farnesyltransfe 99.4 4E-11 1.4E-15 117.7 25.3 154 161-322 100-254 (382)
53 2h6f_A Protein farnesyltransfe 99.4 4.8E-11 1.6E-15 117.1 25.7 231 196-469 96-344 (382)
54 2q7f_A YRRB protein; TPR, prot 99.4 1.2E-11 4E-16 113.5 19.4 195 163-402 28-222 (243)
55 4a1s_A PINS, partner of inscut 99.4 4.6E-12 1.6E-16 126.4 17.8 92 202-294 53-153 (411)
56 4a1s_A PINS, partner of inscut 99.4 7.6E-12 2.6E-16 124.8 18.0 273 164-472 54-372 (411)
57 3sf4_A G-protein-signaling mod 99.4 2.5E-11 8.6E-16 120.5 21.4 273 196-470 8-334 (406)
58 2ond_A Cleavage stimulation fa 99.4 2.3E-10 7.9E-15 109.4 27.0 219 175-437 33-270 (308)
59 3ro2_A PINS homolog, G-protein 99.4 5.3E-12 1.8E-16 121.5 15.5 96 198-294 6-110 (338)
60 3sf4_A G-protein-signaling mod 99.4 1.4E-11 4.8E-16 122.3 18.9 290 164-459 15-363 (406)
61 2ond_A Cleavage stimulation fa 99.4 1.1E-09 3.8E-14 104.6 30.2 236 197-472 8-270 (308)
62 3ulq_A Response regulator aspa 99.4 1.1E-10 3.6E-15 115.5 23.5 305 167-507 21-367 (383)
63 3ro2_A PINS homolog, G-protein 99.3 2.9E-11 9.8E-16 116.4 17.9 272 165-472 12-332 (338)
64 3nf1_A KLC 1, kinesin light ch 99.3 1.5E-11 5.1E-16 117.2 13.6 240 196-471 26-306 (311)
65 3e4b_A ALGK; tetratricopeptide 99.3 2.2E-10 7.5E-15 115.7 22.5 314 165-510 10-389 (452)
66 3ulq_A Response regulator aspa 99.3 4.7E-10 1.6E-14 110.8 23.6 185 339-527 144-353 (383)
67 3nf1_A KLC 1, kinesin light ch 99.3 1.9E-11 6.4E-16 116.6 12.2 248 230-508 25-307 (311)
68 4abn_A Tetratricopeptide repea 99.3 1.6E-10 5.3E-15 117.6 18.3 209 174-394 84-313 (474)
69 3vtx_A MAMA; tetratricopeptide 99.2 2.1E-09 7.1E-14 93.9 22.6 166 196-366 4-169 (184)
70 3vtx_A MAMA; tetratricopeptide 99.2 1.7E-09 5.7E-14 94.6 21.7 167 337-508 4-170 (184)
71 3q15_A PSP28, response regulat 99.2 7.5E-10 2.6E-14 109.1 21.4 307 167-507 21-364 (378)
72 4abn_A Tetratricopeptide repea 99.2 1.1E-09 3.8E-14 111.3 23.1 224 213-469 84-318 (474)
73 3q15_A PSP28, response regulat 99.2 5.8E-09 2E-13 102.7 25.5 187 317-504 115-328 (378)
74 1hz4_A MALT regulatory protein 99.2 8.2E-09 2.8E-13 101.3 26.4 300 201-510 18-351 (373)
75 3e4b_A ALGK; tetratricopeptide 99.2 3E-09 1E-13 107.4 23.1 306 173-507 89-420 (452)
76 1hz4_A MALT regulatory protein 99.2 1.8E-08 6.2E-13 98.8 28.0 270 236-507 18-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.1 4.5E-09 1.5E-13 91.3 19.6 163 341-508 11-173 (186)
78 3as5_A MAMA; tetratricopeptide 99.1 7.7E-09 2.6E-13 89.8 18.9 164 198-366 9-172 (186)
79 4e6h_A MRNA 3'-END-processing 99.1 6.2E-07 2.1E-11 94.0 34.9 186 338-527 343-551 (679)
80 3edt_B KLC 2, kinesin light ch 99.0 2.7E-09 9.1E-14 99.8 14.9 159 171-330 14-196 (283)
81 3edt_B KLC 2, kinesin light ch 99.0 1.9E-09 6.6E-14 100.7 13.1 228 277-508 11-281 (283)
82 4gyw_A UDP-N-acetylglucosamine 99.0 1.1E-08 3.9E-13 108.4 20.3 163 159-331 10-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.0 1.3E-08 4.6E-13 107.8 20.4 165 338-507 9-173 (723)
84 3mv2_B Coatomer subunit epsilo 99.0 9.8E-08 3.4E-12 89.1 22.0 243 205-472 21-282 (310)
85 2fo7_A Synthetic consensus TPR 99.0 5.8E-08 2E-12 79.1 18.0 130 161-297 4-133 (136)
86 2fo7_A Synthetic consensus TPR 98.9 7.8E-08 2.7E-12 78.3 17.7 129 376-508 4-132 (136)
87 4i17_A Hypothetical protein; T 98.9 1.4E-07 4.9E-12 85.3 21.0 195 301-509 6-210 (228)
88 4i17_A Hypothetical protein; T 98.9 1.4E-07 4.8E-12 85.3 20.1 206 265-485 5-220 (228)
89 3mv2_B Coatomer subunit epsilo 98.9 1.5E-06 5E-11 81.2 25.5 244 240-509 21-283 (310)
90 1qqe_A Vesicular transport pro 98.9 1.8E-07 6.3E-12 88.3 19.7 135 161-295 40-186 (292)
91 1qqe_A Vesicular transport pro 98.8 2E-07 6.9E-12 88.0 19.0 200 204-436 44-268 (292)
92 4e6h_A MRNA 3'-END-processing 98.8 1.1E-05 3.9E-10 84.4 33.8 343 157-508 65-499 (679)
93 3qky_A Outer membrane assembly 98.8 1.8E-07 6.1E-12 86.7 17.7 186 196-402 14-224 (261)
94 3rjv_A Putative SEL1 repeat pr 98.8 1.1E-06 3.6E-11 78.6 20.1 180 321-512 4-201 (212)
95 3urz_A Uncharacterized protein 98.7 6.9E-07 2.4E-11 79.6 17.5 172 346-527 12-203 (208)
96 3urz_A Uncharacterized protein 98.7 9.5E-07 3.2E-11 78.7 17.9 124 238-366 60-185 (208)
97 2ifu_A Gamma-SNAP; membrane fu 98.7 1.4E-06 4.9E-11 82.8 20.0 229 171-464 4-253 (307)
98 2pzi_A Probable serine/threoni 98.7 2.3E-07 8E-12 98.5 15.2 166 316-488 404-578 (681)
99 3dra_A Protein farnesyltransfe 98.7 2.4E-05 8.1E-10 73.6 27.1 229 169-436 43-286 (306)
100 3qky_A Outer membrane assembly 98.6 2.3E-06 7.8E-11 79.1 19.8 164 341-510 18-226 (261)
101 2ifu_A Gamma-SNAP; membrane fu 98.6 5.6E-07 1.9E-11 85.6 15.7 153 317-470 50-222 (307)
102 4ga2_A E3 SUMO-protein ligase 98.6 1.7E-07 5.7E-12 78.8 10.5 134 169-311 8-142 (150)
103 2vsy_A XCC0866; transferase, g 98.6 1.4E-06 4.7E-11 90.6 18.6 153 317-473 3-158 (568)
104 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.1E-06 7.2E-11 77.4 17.4 180 308-510 10-215 (225)
105 3rjv_A Putative SEL1 repeat pr 98.6 5.9E-06 2E-10 73.7 19.9 175 176-368 4-198 (212)
106 2vsy_A XCC0866; transferase, g 98.6 1.1E-06 3.8E-11 91.3 17.2 152 172-333 3-158 (568)
107 2r5s_A Uncharacterized protein 98.6 1E-06 3.5E-11 76.1 14.3 158 164-330 12-171 (176)
108 3dra_A Protein farnesyltransfe 98.6 5E-05 1.7E-09 71.4 26.6 236 210-484 46-298 (306)
109 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.8E-06 2.3E-10 74.1 19.9 202 231-473 3-214 (225)
110 2pzi_A Probable serine/threoni 98.6 4.1E-07 1.4E-11 96.6 13.3 171 208-387 402-582 (681)
111 3qou_A Protein YBBN; thioredox 98.6 1.2E-06 4.2E-11 82.3 15.2 162 233-399 118-281 (287)
112 4ga2_A E3 SUMO-protein ligase 98.5 7.6E-07 2.6E-11 74.7 11.9 84 378-463 36-119 (150)
113 2r5s_A Uncharacterized protein 98.5 8E-07 2.7E-11 76.8 12.3 161 341-506 9-171 (176)
114 3u3w_A Transcriptional activat 98.5 2.3E-05 7.7E-10 73.8 23.4 96 375-470 157-264 (293)
115 3u3w_A Transcriptional activat 98.5 2.8E-05 9.7E-10 73.1 23.8 164 343-507 80-265 (293)
116 3qou_A Protein YBBN; thioredox 98.5 3.8E-06 1.3E-10 78.9 16.8 164 196-365 116-282 (287)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.5 7.4E-06 2.5E-10 72.8 17.7 127 341-472 9-150 (213)
118 2uy1_A Cleavage stimulation fa 98.5 9.4E-05 3.2E-09 75.0 27.8 314 172-505 28-380 (493)
119 2uy1_A Cleavage stimulation fa 98.5 0.00028 9.7E-09 71.4 30.7 329 156-507 45-412 (493)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.6E-05 5.4E-10 70.6 19.0 131 375-511 8-153 (213)
121 1a17_A Serine/threonine protei 98.4 8.6E-06 2.9E-10 68.9 16.2 97 198-296 14-110 (166)
122 4gco_A Protein STI-1; structur 98.4 4.2E-06 1.4E-10 67.7 13.4 99 197-297 13-111 (126)
123 3gyz_A Chaperone protein IPGC; 98.4 4.3E-06 1.5E-10 70.0 13.4 103 196-302 35-137 (151)
124 2e2e_A Formate-dependent nitri 98.4 4.3E-06 1.5E-10 72.0 13.8 121 170-297 22-145 (177)
125 1na0_A Designed protein CTPR3; 98.4 1.2E-05 4E-10 64.1 15.4 99 197-297 9-107 (125)
126 1a17_A Serine/threonine protei 98.4 2.2E-05 7.6E-10 66.3 17.4 128 159-293 14-143 (166)
127 4gco_A Protein STI-1; structur 98.4 1E-05 3.6E-10 65.3 14.4 106 161-273 16-121 (126)
128 2qfc_A PLCR protein; TPR, HTH, 98.4 6.6E-05 2.2E-09 70.6 22.2 127 344-470 121-264 (293)
129 2vgx_A Chaperone SYCD; alterna 98.3 2.8E-06 9.6E-11 71.0 10.2 110 181-297 10-119 (148)
130 1na0_A Designed protein CTPR3; 98.3 2.1E-05 7.1E-10 62.6 15.1 98 373-472 9-106 (125)
131 3gw4_A Uncharacterized protein 98.3 1E-05 3.5E-10 71.1 14.3 156 350-507 4-175 (203)
132 3q7a_A Farnesyltransferase alp 98.3 0.00034 1.2E-08 66.5 25.3 130 172-309 68-208 (349)
133 2qfc_A PLCR protein; TPR, HTH, 98.3 0.00013 4.4E-09 68.5 22.5 165 341-506 78-264 (293)
134 2vyi_A SGTA protein; chaperone 98.3 2E-05 6.8E-10 63.3 14.7 98 197-296 12-109 (131)
135 1p5q_A FKBP52, FK506-binding p 98.3 2.7E-06 9.2E-11 82.0 10.6 149 172-330 127-292 (336)
136 3q7a_A Farnesyltransferase alp 98.3 0.00058 2E-08 64.9 25.9 253 209-485 66-343 (349)
137 4f3v_A ESX-1 secretion system 98.3 9.2E-06 3.2E-10 74.7 12.7 185 170-366 18-236 (282)
138 3gw4_A Uncharacterized protein 98.3 9.1E-06 3.1E-10 71.4 12.4 121 170-295 4-135 (203)
139 3gyz_A Chaperone protein IPGC; 98.2 1.2E-05 4.3E-10 67.1 12.2 98 163-268 41-138 (151)
140 1p5q_A FKBP52, FK506-binding p 98.2 2.5E-05 8.6E-10 75.1 15.9 133 160-294 149-292 (336)
141 2lni_A Stress-induced-phosphop 98.2 1.6E-05 5.6E-10 64.2 12.5 100 196-297 15-114 (133)
142 2e2e_A Formate-dependent nitri 98.2 3E-05 1E-09 66.6 14.8 119 386-508 23-144 (177)
143 2vyi_A SGTA protein; chaperone 98.2 3.5E-05 1.2E-09 61.8 14.3 95 375-471 14-108 (131)
144 4f3v_A ESX-1 secretion system 98.2 3.1E-05 1.1E-09 71.2 15.3 189 209-402 18-237 (282)
145 2c2l_A CHIP, carboxy terminus 98.2 1.8E-05 6.2E-10 74.0 13.8 191 161-367 7-199 (281)
146 2c2l_A CHIP, carboxy terminus 98.2 1E-05 3.5E-10 75.7 12.0 99 196-296 3-101 (281)
147 2lni_A Stress-induced-phosphop 98.2 2.4E-05 8.2E-10 63.2 12.7 99 372-472 15-113 (133)
148 2fbn_A 70 kDa peptidylprolyl i 98.2 5.1E-06 1.8E-10 73.1 8.9 119 172-297 18-152 (198)
149 2xcb_A PCRH, regulatory protei 98.2 1.3E-05 4.6E-10 66.2 10.7 100 196-297 17-116 (142)
150 4b4t_Q 26S proteasome regulato 98.1 0.00021 7.1E-09 71.1 20.9 166 271-436 59-244 (434)
151 3upv_A Heat shock protein STI1 98.1 7.4E-05 2.5E-09 60.0 14.3 97 197-295 4-100 (126)
152 2vgx_A Chaperone SYCD; alterna 98.1 2.4E-05 8.3E-10 65.2 11.6 94 411-507 24-117 (148)
153 1elw_A TPR1-domain of HOP; HOP 98.1 8.1E-05 2.8E-09 58.4 14.1 100 196-297 3-102 (118)
154 4gcn_A Protein STI-1; structur 98.1 5.3E-05 1.8E-09 61.1 13.0 99 197-296 8-112 (127)
155 1elw_A TPR1-domain of HOP; HOP 98.1 0.00017 5.8E-09 56.5 15.6 107 161-274 7-113 (118)
156 3upv_A Heat shock protein STI1 98.1 9.3E-05 3.2E-09 59.4 14.2 95 161-261 7-101 (126)
157 4gcn_A Protein STI-1; structur 98.1 7.1E-05 2.4E-09 60.4 13.0 105 161-272 11-121 (127)
158 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00012 4.2E-09 61.9 15.1 96 373-470 11-106 (164)
159 2kck_A TPR repeat; tetratricop 98.1 6.5E-05 2.2E-09 58.4 12.4 97 198-296 7-106 (112)
160 2xcb_A PCRH, regulatory protei 98.0 6.6E-05 2.3E-09 61.9 12.5 92 164-261 24-115 (142)
161 3q49_B STIP1 homology and U bo 98.0 0.00013 4.3E-09 59.4 14.1 99 196-296 8-106 (137)
162 2kck_A TPR repeat; tetratricop 98.0 7.1E-05 2.4E-09 58.1 12.0 92 377-470 10-104 (112)
163 1elr_A TPR2A-domain of HOP; HO 98.0 5E-05 1.7E-09 60.9 11.4 96 199-295 6-107 (131)
164 2dba_A Smooth muscle cell asso 98.0 0.00026 8.8E-09 58.2 16.0 99 196-297 27-129 (148)
165 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00015 5.1E-09 61.3 14.6 90 166-261 19-108 (164)
166 2dba_A Smooth muscle cell asso 98.0 0.00019 6.5E-09 59.0 14.7 98 372-472 27-128 (148)
167 3q49_B STIP1 homology and U bo 98.0 0.00017 5.7E-09 58.6 14.1 96 373-470 9-104 (137)
168 2fbn_A 70 kDa peptidylprolyl i 98.0 7.1E-05 2.4E-09 65.7 12.4 130 164-295 44-185 (198)
169 1elr_A TPR2A-domain of HOP; HO 97.9 0.00021 7.3E-09 57.1 13.6 97 410-508 6-108 (131)
170 1hxi_A PEX5, peroxisome target 97.9 8.8E-05 3E-09 59.3 10.8 89 167-261 26-114 (121)
171 4b4t_Q 26S proteasome regulato 97.9 0.00052 1.8E-08 68.1 18.6 205 165-400 11-243 (434)
172 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 3.6E-05 1.2E-09 77.4 9.4 143 172-323 248-405 (457)
173 3dss_A Geranylgeranyl transfer 97.9 0.0062 2.1E-07 57.5 23.9 183 319-508 90-304 (331)
174 3dss_A Geranylgeranyl transfer 97.9 0.011 3.7E-07 55.9 25.6 131 169-307 40-184 (331)
175 1hxi_A PEX5, peroxisome target 97.9 0.00014 4.7E-09 58.1 10.9 97 199-297 19-115 (121)
176 3ro3_A PINS homolog, G-protein 97.8 0.00014 4.9E-09 60.6 11.3 130 376-506 12-156 (164)
177 2xev_A YBGF; tetratricopeptide 97.8 0.00055 1.9E-08 54.8 13.9 94 202-297 7-106 (129)
178 3ro3_A PINS homolog, G-protein 97.8 0.00025 8.7E-09 59.0 12.2 133 162-294 13-156 (164)
179 2xev_A YBGF; tetratricopeptide 97.8 0.00085 2.9E-08 53.6 14.7 93 164-262 8-106 (129)
180 1wao_1 Serine/threonine protei 97.7 7.6E-05 2.6E-09 75.4 9.3 116 169-291 17-134 (477)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0004 1.4E-08 69.8 14.4 128 160-294 270-413 (457)
182 1ihg_A Cyclophilin 40; ppiase 97.7 0.00049 1.7E-08 66.9 14.3 120 161-287 226-361 (370)
183 3k9i_A BH0479 protein; putativ 97.7 0.00011 3.8E-09 58.1 7.6 85 171-261 3-90 (117)
184 3k9i_A BH0479 protein; putativ 97.6 0.00011 3.6E-09 58.3 7.1 85 386-471 3-89 (117)
185 3rkv_A Putative peptidylprolyl 97.6 0.001 3.4E-08 55.9 13.7 63 444-508 64-126 (162)
186 3rkv_A Putative peptidylprolyl 97.6 0.00079 2.7E-08 56.6 12.9 99 162-261 15-126 (162)
187 1wao_1 Serine/threonine protei 97.6 0.00016 5.6E-09 73.0 9.4 119 346-467 14-134 (477)
188 1ihg_A Cyclophilin 40; ppiase 97.6 0.00068 2.3E-08 65.9 13.3 100 197-297 223-337 (370)
189 2if4_A ATFKBP42; FKBP-like, al 97.6 0.0002 6.8E-09 68.8 9.2 149 338-508 179-328 (338)
190 3n71_A Histone lysine methyltr 97.5 0.0004 1.4E-08 69.9 11.2 90 170-259 321-420 (490)
191 1klx_A Cysteine rich protein B 97.5 0.003 1E-07 51.5 14.4 16 422-437 75-90 (138)
192 3n71_A Histone lysine methyltr 97.5 0.00059 2E-08 68.6 12.1 88 207-294 319-420 (490)
193 1klx_A Cysteine rich protein B 97.5 0.0013 4.5E-08 53.7 12.1 113 387-511 9-129 (138)
194 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00043 1.5E-08 66.4 9.6 96 196-294 178-291 (338)
195 2hr2_A Hypothetical protein; a 97.3 0.0012 4.1E-08 54.8 9.7 96 164-259 17-129 (159)
196 2hr2_A Hypothetical protein; a 97.3 0.0058 2E-07 50.6 13.8 76 410-485 59-149 (159)
197 2kat_A Uncharacterized protein 97.3 0.0013 4.5E-08 51.4 9.5 79 176-260 3-81 (115)
198 1dce_A Protein (RAB geranylger 97.3 0.023 7.9E-07 58.4 20.5 171 174-353 45-241 (567)
199 2l6j_A TPR repeat-containing p 97.2 0.0013 4.6E-08 50.7 8.3 90 196-288 3-99 (111)
200 1dce_A Protein (RAB geranylger 97.2 0.012 4.1E-07 60.5 17.6 136 354-494 89-241 (567)
201 1na3_A Designed protein CTPR2; 97.1 0.0052 1.8E-07 45.2 10.5 82 196-279 8-89 (91)
202 2kat_A Uncharacterized protein 97.1 0.0042 1.4E-07 48.5 10.4 62 443-506 19-80 (115)
203 1zu2_A Mitochondrial import re 97.1 0.0017 5.8E-08 53.8 8.1 87 169-261 13-120 (158)
204 1na3_A Designed protein CTPR2; 97.0 0.0054 1.9E-07 45.1 10.1 78 161-244 12-89 (91)
205 2l6j_A TPR repeat-containing p 97.0 0.0029 9.9E-08 48.7 8.4 89 160-255 6-101 (111)
206 1zu2_A Mitochondrial import re 96.8 0.0054 1.8E-07 50.7 8.5 98 208-309 13-131 (158)
207 3ma5_A Tetratricopeptide repea 96.7 0.0074 2.5E-07 45.8 8.7 64 196-260 6-69 (100)
208 3ma5_A Tetratricopeptide repea 96.5 0.014 4.7E-07 44.3 8.8 62 408-470 7-68 (100)
209 3ly7_A Transcriptional activat 96.3 0.12 4E-06 49.2 15.6 126 174-308 215-349 (372)
210 2kc7_A BFR218_protein; tetratr 96.1 0.014 4.8E-07 43.8 7.0 56 167-227 9-65 (99)
211 3qww_A SET and MYND domain-con 96.1 0.013 4.4E-07 57.9 8.3 87 209-295 310-410 (433)
212 3qww_A SET and MYND domain-con 96.1 0.02 6.7E-07 56.6 9.5 90 171-260 311-410 (433)
213 3mkq_A Coatomer beta'-subunit; 96.1 0.25 8.7E-06 53.0 19.1 20 236-255 633-652 (814)
214 3qwp_A SET and MYND domain-con 96.0 0.04 1.4E-06 54.4 11.4 91 380-470 294-398 (429)
215 3qwp_A SET and MYND domain-con 95.9 0.028 9.7E-07 55.4 9.8 94 202-295 292-399 (429)
216 3mkq_A Coatomer beta'-subunit; 95.8 0.12 4E-06 55.7 15.0 103 162-295 633-735 (814)
217 3ly7_A Transcriptional activat 95.8 0.22 7.6E-06 47.3 14.7 72 406-481 275-346 (372)
218 3mkq_B Coatomer subunit alpha; 95.7 0.67 2.3E-05 38.8 15.6 128 167-329 14-141 (177)
219 1pc2_A Mitochondria fission pr 95.7 0.19 6.6E-06 41.0 12.0 95 424-523 14-114 (152)
220 2kc7_A BFR218_protein; tetratr 95.4 0.072 2.5E-06 39.7 8.3 57 204-261 7-64 (99)
221 3bee_A Putative YFRE protein; 95.4 0.21 7E-06 37.1 10.6 66 442-509 5-73 (93)
222 1wy6_A Hypothetical protein ST 95.3 0.8 2.8E-05 36.1 14.2 66 409-475 92-157 (172)
223 1pc2_A Mitochondria fission pr 94.8 0.32 1.1E-05 39.6 10.7 89 389-481 14-107 (152)
224 3bee_A Putative YFRE protein; 94.7 0.2 6.8E-06 37.2 8.8 48 174-226 25-72 (93)
225 1wy6_A Hypothetical protein ST 94.6 1.3 4.4E-05 35.0 15.4 139 278-439 18-156 (172)
226 2v5f_A Prolyl 4-hydroxylase su 94.6 0.28 9.7E-06 37.2 9.7 67 160-226 7-75 (104)
227 3mkq_B Coatomer subunit alpha; 94.5 1.9 6.4E-05 36.1 15.9 73 208-295 16-88 (177)
228 3u64_A Protein TP_0956; tetrat 94.0 0.42 1.4E-05 43.6 10.7 66 409-474 200-271 (301)
229 1nzn_A CGI-135 protein, fissio 93.6 1.1 3.8E-05 35.1 11.1 86 421-508 14-103 (126)
230 3u64_A Protein TP_0956; tetrat 93.4 0.76 2.6E-05 41.9 11.3 110 196-307 153-282 (301)
231 2v5f_A Prolyl 4-hydroxylase su 93.2 1.4 4.8E-05 33.1 11.3 62 410-471 7-74 (104)
232 4h7y_A Dual specificity protei 92.4 1.6 5.4E-05 35.2 10.5 64 422-487 74-137 (161)
233 4h7y_A Dual specificity protei 91.0 1.3 4.4E-05 35.8 8.5 94 355-451 36-136 (161)
234 4gns_B Protein CSD3, chitin bi 90.8 1.5 5.2E-05 46.0 11.5 127 342-469 252-397 (754)
235 1nzn_A CGI-135 protein, fissio 90.6 1.1 3.9E-05 35.0 7.8 91 385-479 13-108 (126)
236 4fhn_B Nucleoporin NUP120; pro 89.0 11 0.00036 42.3 17.3 182 317-506 826-1048(1139)
237 2ff4_A Probable regulatory pro 88.9 1.8 6.3E-05 41.7 9.8 70 411-481 174-248 (388)
238 4gns_B Protein CSD3, chitin bi 88.8 2.1 7.3E-05 44.9 10.7 53 346-399 345-397 (754)
239 2ff4_A Probable regulatory pro 88.7 1.9 6.5E-05 41.6 9.7 67 237-304 176-247 (388)
240 4b4t_P 26S proteasome regulato 87.6 19 0.00066 35.2 16.3 93 378-470 142-245 (445)
241 1v54_E Cytochrome C oxidase po 87.2 2.5 8.7E-05 31.3 7.0 48 214-261 27-74 (109)
242 3txn_A 26S proteasome regulato 87.1 22 0.00075 34.1 24.0 170 343-517 104-292 (394)
243 4fhn_B Nucleoporin NUP120; pro 87.0 19 0.00063 40.3 17.7 28 196-223 841-868 (1139)
244 1v54_E Cytochrome C oxidase po 86.7 7.5 0.00026 28.8 9.3 63 318-381 25-87 (109)
245 4b4t_P 26S proteasome regulato 86.5 26 0.00088 34.3 22.3 52 172-223 30-82 (445)
246 3esl_A Checkpoint serine/threo 82.6 21 0.00072 30.3 11.8 56 421-476 92-148 (202)
247 3txn_A 26S proteasome regulato 81.9 37 0.0013 32.5 18.6 130 164-294 25-166 (394)
248 2y69_E Cytochrome C oxidase su 81.9 13 0.00045 29.2 9.3 63 318-381 68-130 (152)
249 4ady_A RPN2, 26S proteasome re 81.6 62 0.0021 34.9 21.7 257 242-507 384-657 (963)
250 2y69_E Cytochrome C oxidase su 80.2 8.9 0.0003 30.1 7.8 59 215-274 71-129 (152)
251 3o48_A Mitochondria fission 1 77.0 19 0.00063 28.3 8.9 17 491-507 90-106 (134)
252 3lvg_A Clathrin heavy chain 1; 76.4 0.0077 2.6E-07 58.6 -12.5 243 197-463 54-324 (624)
253 2p58_C Putative type III secre 75.0 17 0.00059 26.8 7.6 76 423-509 22-99 (116)
254 3eiq_C Programmed cell death p 74.1 34 0.0012 32.2 11.7 64 341-405 220-285 (358)
255 2uwj_G Type III export protein 72.8 17 0.00059 26.8 7.1 83 423-517 21-105 (115)
256 2wpv_A GET4, UPF0363 protein Y 71.7 62 0.0021 29.8 19.0 138 349-506 64-215 (312)
257 3ffl_A Anaphase-promoting comp 71.5 41 0.0014 27.6 10.1 117 166-295 28-150 (167)
258 2p58_C Putative type III secre 69.6 31 0.0011 25.5 7.9 49 418-472 50-98 (116)
259 4b4t_R RPN7, 26S proteasome re 69.5 37 0.0013 33.0 11.5 61 340-400 133-195 (429)
260 1zbp_A Hypothetical protein VP 69.3 30 0.001 30.9 9.6 114 347-471 6-128 (273)
261 4a1g_A Mitotic checkpoint seri 68.6 45 0.0015 26.9 11.3 51 462-512 84-134 (152)
262 3lpz_A GET4 (YOR164C homolog); 68.4 76 0.0026 29.5 19.9 25 266-290 135-159 (336)
263 3esl_A Checkpoint serine/threo 66.4 36 0.0012 28.9 9.0 56 386-441 92-148 (202)
264 2uwj_G Type III export protein 65.8 30 0.001 25.5 7.1 49 418-472 49-97 (115)
265 2nsz_A Programmed cell death p 65.0 20 0.00067 28.1 6.9 64 411-475 10-75 (129)
266 3eiq_C Programmed cell death p 64.6 55 0.0019 30.8 10.9 81 446-528 220-303 (358)
267 2zu6_B Programmed cell death p 64.3 74 0.0025 29.2 11.6 25 200-224 6-30 (307)
268 1y8m_A FIS1; mitochondria, unk 64.2 53 0.0018 26.1 11.6 18 491-508 89-106 (144)
269 4b4t_R RPN7, 26S proteasome re 63.5 50 0.0017 32.0 11.1 62 304-366 133-196 (429)
270 2wvi_A Mitotic checkpoint seri 61.1 67 0.0023 26.3 11.4 52 462-513 79-130 (164)
271 3ffl_A Anaphase-promoting comp 60.3 65 0.0022 26.4 9.2 59 341-399 23-89 (167)
272 4ady_A RPN2, 26S proteasome re 60.3 1.9E+02 0.0065 31.2 22.3 273 206-489 383-672 (963)
273 1y8m_A FIS1; mitochondria, unk 58.3 68 0.0023 25.5 14.2 78 403-482 34-114 (144)
274 4aez_C MAD3, mitotic spindle c 57.6 71 0.0024 27.6 9.5 53 460-512 131-183 (223)
275 3o48_A Mitochondria fission 1 57.4 68 0.0023 25.2 11.8 81 403-485 35-118 (134)
276 1zbp_A Hypothetical protein VP 57.2 1.1E+02 0.0037 27.4 13.3 117 240-366 5-128 (273)
277 2ion_A PDCD4, programmed cell 57.0 31 0.0011 27.9 6.9 65 410-475 11-77 (152)
278 2wpv_A GET4, UPF0363 protein Y 53.9 1.3E+02 0.0046 27.5 19.4 83 208-290 64-157 (312)
279 3hra_A Ankyrin repeat family p 52.4 25 0.00084 29.4 6.0 12 209-220 14-25 (201)
280 4a1g_A Mitotic checkpoint seri 52.4 83 0.0028 25.3 8.5 50 427-476 84-134 (152)
281 3lpz_A GET4 (YOR164C homolog); 51.6 1.5E+02 0.0052 27.5 20.8 126 362-507 83-215 (336)
282 2zu6_B Programmed cell death p 50.4 1.2E+02 0.0042 27.7 10.6 85 445-531 168-255 (307)
283 1wdy_A 2-5A-dependent ribonucl 50.4 20 0.0007 31.8 5.5 13 501-513 268-280 (285)
284 2wvi_A Mitotic checkpoint seri 48.5 1E+02 0.0035 25.1 8.6 53 426-478 78-131 (164)
285 1k1a_A B-cell lymphoma 3-encod 46.8 49 0.0017 28.4 7.3 25 205-229 14-38 (241)
286 4g8k_A 2-5A-dependent ribonucl 46.2 65 0.0022 29.6 8.4 150 345-514 172-329 (337)
287 1k1a_A B-cell lymphoma 3-encod 44.3 53 0.0018 28.2 7.1 26 239-264 13-38 (241)
288 1ug3_A EIF4GI, eukaryotic prot 43.6 85 0.0029 29.2 8.6 294 201-527 15-321 (339)
289 1wdy_A 2-5A-dependent ribonucl 42.9 29 0.00098 30.8 5.2 214 271-514 6-248 (285)
290 2ion_A PDCD4, programmed cell 42.4 1.3E+02 0.0045 24.1 8.5 67 199-266 11-79 (152)
291 1qsa_A Protein (soluble lytic 39.5 3.2E+02 0.011 27.8 21.7 122 380-507 222-347 (618)
292 3t8k_A Uncharacterized protein 39.0 81 0.0028 26.1 7.1 7 209-215 15-21 (186)
293 3lvg_A Clathrin heavy chain 1; 38.5 0.39 1.3E-05 47.0 -8.4 244 232-499 54-324 (624)
294 3kae_A CDC27, possible protein 38.5 1.5E+02 0.0051 24.5 7.8 93 385-504 45-139 (242)
295 2rg8_A Programmed cell death p 38.1 57 0.0019 26.7 5.7 25 411-435 13-37 (165)
296 3eu9_A Huntingtin-interacting 36.5 45 0.0016 28.5 5.3 12 491-502 219-230 (240)
297 3c1d_A Protein ORAA, regulator 36.4 1.7E+02 0.0057 23.6 10.1 11 429-439 84-94 (159)
298 2qx5_A Nucleoporin NIC96; mRNA 33.8 4E+02 0.014 27.4 12.3 80 202-293 299-382 (661)
299 2nsz_A Programmed cell death p 33.8 1.6E+02 0.0056 22.7 9.9 67 199-266 9-77 (129)
300 3mv2_A Coatomer subunit alpha; 33.1 2.9E+02 0.0099 25.4 10.0 57 458-515 185-243 (325)
301 3eu9_A Huntingtin-interacting 33.1 40 0.0014 28.8 4.4 14 273-286 45-58 (240)
302 2d2s_A Exocyst complex compone 32.9 2.4E+02 0.0081 24.6 9.2 91 343-436 23-119 (235)
303 4aez_C MAD3, mitotic spindle c 31.6 90 0.0031 27.0 6.0 52 425-476 131-183 (223)
304 2xig_A Ferric uptake regulatio 31.2 1.4E+02 0.0049 23.7 7.0 60 399-459 18-77 (150)
305 3ltj_A Alpharep-4; protein eng 30.6 2.2E+02 0.0077 23.3 17.0 140 371-527 57-197 (201)
306 2d2s_A Exocyst complex compone 29.8 2.8E+02 0.0095 24.1 12.5 87 204-293 25-117 (235)
307 3aji_A 26S proteasome non-ATPa 29.7 83 0.0029 26.7 5.9 16 276-291 12-27 (231)
308 3ltm_A Alpha-REP4; protein eng 29.5 2.4E+02 0.0083 23.3 17.4 167 341-528 36-203 (211)
309 2fe3_A Peroxide operon regulat 28.0 1.4E+02 0.0049 23.5 6.4 59 399-458 13-71 (145)
310 3b7b_A Euchromatic histone-lys 27.9 34 0.0012 29.4 2.9 17 491-507 219-235 (237)
311 3l6a_A Eukaryotic translation 27.7 96 0.0033 29.2 6.1 27 409-435 13-39 (364)
312 1qsa_A Protein (soluble lytic 27.6 5E+02 0.017 26.4 24.6 226 196-436 101-347 (618)
313 1dm5_A Annexin XII E105K mutan 27.5 3.6E+02 0.012 24.6 13.6 41 462-506 249-289 (315)
314 2zhj_A Annexin A4; zynogen gra 27.1 3.7E+02 0.013 24.6 12.4 42 461-506 253-294 (322)
315 4ets_A Ferric uptake regulatio 26.2 2E+02 0.007 23.2 7.2 58 224-282 25-84 (162)
316 3kae_A CDC27, possible protein 26.1 2.8E+02 0.0094 22.9 7.4 71 206-294 71-141 (242)
317 2keb_A DNA polymerase subunit 26.0 1.9E+02 0.0067 21.1 6.5 31 427-457 28-58 (101)
318 2fu4_A Ferric uptake regulatio 25.7 1.6E+02 0.0056 20.1 6.6 58 223-281 8-66 (83)
319 3jxi_A Vanilloid receptor-rela 25.6 34 0.0011 30.1 2.5 26 206-231 11-36 (260)
320 3kea_A K1L; tropism, ANK repea 25.5 89 0.003 27.9 5.4 18 274-291 35-52 (285)
321 1mzb_A Ferric uptake regulatio 25.1 2.4E+02 0.0082 21.8 7.3 58 223-281 9-67 (136)
322 3kea_A K1L; tropism, ANK repea 24.9 1.1E+02 0.0037 27.4 5.8 19 380-398 165-183 (285)
323 2ijq_A Hypothetical protein; s 24.9 2.8E+02 0.0095 22.5 8.1 61 410-471 35-103 (161)
324 3e3v_A Regulatory protein RECX 24.6 2.9E+02 0.01 22.6 10.0 47 392-439 52-98 (177)
325 3bge_A Predicted ATPase; struc 24.3 1.7E+02 0.0058 24.6 6.2 22 456-477 20-41 (201)
326 1mzb_A Ferric uptake regulatio 24.2 1.4E+02 0.0049 23.1 5.7 59 399-458 9-68 (136)
327 3pvs_A Replication-associated 24.0 4.9E+02 0.017 25.1 11.9 152 318-471 166-358 (447)
328 4gq2_M Nucleoporin NUP120; bet 23.9 4.7E+02 0.016 28.3 11.4 46 269-314 899-948 (950)
329 3t8k_A Uncharacterized protein 23.5 1.7E+02 0.0058 24.0 6.4 129 382-516 12-151 (186)
330 3ctd_A Putative ATPase, AAA fa 22.8 1.8E+02 0.0063 24.7 6.2 45 479-525 37-81 (213)
331 1wgl_A TOLL-interacting protei 22.4 1E+02 0.0034 20.2 3.6 34 196-231 24-57 (59)
332 2qx5_A Nucleoporin NIC96; mRNA 22.3 6.5E+02 0.022 25.8 13.3 44 199-244 155-198 (661)
333 3bge_A Predicted ATPase; struc 22.0 3.6E+02 0.012 22.7 8.6 35 386-420 20-54 (201)
334 1qmy_A Protease, leader protea 21.8 47 0.0016 26.0 2.1 56 145-202 24-79 (167)
335 2hyv_A Annexin A2; calcium-bin 21.6 4.5E+02 0.015 23.8 9.3 190 200-399 64-279 (308)
336 2rfa_A Transient receptor pote 21.3 2.2E+02 0.0076 23.9 7.0 21 453-473 161-181 (232)
337 3jxi_A Vanilloid receptor-rela 21.1 37 0.0013 29.8 1.8 19 244-262 14-32 (260)
338 3eyy_A Putative iron uptake re 21.0 1.4E+02 0.0047 23.7 5.0 58 399-458 10-67 (145)
339 2w57_A Ferric uptake regulatio 20.5 1.6E+02 0.0056 23.3 5.4 60 399-459 8-68 (150)
340 2fe3_A Peroxide operon regulat 20.3 2.9E+02 0.01 21.6 6.9 37 246-282 35-71 (145)
341 2r9g_A AAA ATPase, central reg 20.1 4E+02 0.014 22.5 9.7 35 386-421 27-61 (204)
342 3ljn_A Hypothetical protein; a 20.1 1.1E+02 0.0039 28.2 5.1 93 196-297 17-111 (364)
343 3l6a_A Eukaryotic translation 20.0 5.4E+02 0.018 24.0 11.8 25 235-259 15-39 (364)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.9e-32 Score=276.72 Aligned_cols=176 Identities=17% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHCCCCCCHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD---------MTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455555555555555555555555555555555555555544332 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK 491 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 491 (540)
++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+ +
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~-~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM-D 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-h
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555554 4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 492 ALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 492 ~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
.|++++|.+++++|.+.|..|+..|+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 45555555555555555555555555
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.4e-32 Score=273.92 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 042609 250 WAWSVCEKMIETGSLPDS-EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDD 328 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 328 (540)
.+..+.+.+.+.+..... .+++.+|++|++.|++++|.++|++|.+.|+.|+..+|+++|.+++.. +...+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-~~~~~------- 79 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-EAATE------- 79 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-CCCSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-Cchhh-------
Confidence 345555666666554433 346667777777777777777777777777777777777777766554 21100
Q ss_pred hHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042609 329 FSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDV 408 (540)
Q Consensus 329 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 408 (540)
..+.+.+++|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 80 -------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 80 -------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp -------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred -------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 0123345677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSL 488 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 488 (540)
.||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred H
Q 042609 489 C 489 (540)
Q Consensus 489 ~ 489 (540)
+
T Consensus 221 ~ 221 (501)
T 4g26_A 221 K 221 (501)
T ss_dssp H
T ss_pred h
Confidence 5
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.3e-28 Score=259.86 Aligned_cols=356 Identities=12% Similarity=0.033 Sum_probs=292.9
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-hC--------
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFG-DY-------- 226 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~-------- 226 (540)
++...+..++..+.+.|++++|..+|+.+.... ++..+|+.++.+|.+.|++++|+++|+++. ..
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc------cchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccc
Confidence 455677778888888888888888888765431 478889999999999999999999888532 22
Q ss_pred ------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH----------------------------
Q 042609 227 ------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK---------------------------- 272 (540)
Q Consensus 227 ------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------------------- 272 (540)
|.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 3345678888899999999999999999998887642 23333322
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 273 ----------IISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 273 ----------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
++.+|.+.|++++|.++|+++.+. .++..+|+.++..+++. |++++|+++|+++.+.+.. +..++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~ 343 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR-SRFIDVLAITTKILEIDPY-NLDVYP 343 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CCTTHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcCcc-cHHHHH
Confidence 255566788888898888887764 47788999999999998 9999999999999876533 778899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG 422 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 422 (540)
.++.+|.+.|++++|..+++++.+. .+.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999865 35578899999999999999999999999998753 236889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLL 502 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~ 502 (540)
++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..+|+.+...|+ +.|++++|.++|
T Consensus 422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 498 (597)
T 2xpi_A 422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF-NKSDMQTAINHF 498 (597)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 9999999999999875 4578999999999999999999999999999754 347889999999988 899999999999
Q ss_pred HHHHHC----CCCCc--HHHH-HHHHHHHHHH
Q 042609 503 EDMRLK----GLHLN--GITR-ALIRAVKELE 527 (540)
Q Consensus 503 ~~m~~~----g~~p~--~~t~-~ll~a~~~l~ 527 (540)
++|.+. +..|+ ..++ .+..++...+
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999877 77887 4555 6666665544
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6e-29 Score=262.30 Aligned_cols=360 Identities=11% Similarity=-0.006 Sum_probs=282.6
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhc-----------ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIG-----------EKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGD 225 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~-----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 225 (540)
+...+..++..+++.|++++|.++|+++.... ...+...++.+|+.++.+|.+.|++++|+++|++|.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45578889999999999999999998421111 0000123589999999999999999999999999987
Q ss_pred CCCCCCHHHHHHH--------------------------------------HHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 042609 226 YGCVANQETYYFT--------------------------------------IEALSRRKIFDWAWSVCEKMIETGSLPDS 267 (540)
Q Consensus 226 ~g~~p~~~t~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 267 (540)
.+ +.+...+..+ +..|.+.|++++|.++|+++.+. .++.
T Consensus 229 ~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 305 (597)
T 2xpi_A 229 VD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS 305 (597)
T ss_dssp HC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred hC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence 65 2233333332 44555678888999999888765 5788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 347 (540)
.+++.++.+|.+.|++++|.++|+++.+.+ ..+..++..++..+... |++++|..+++++.+.. ..+..+|+.++..
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRH-PEKAVTWLAVGIY 382 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 899999999999999999999999988765 23566777888888877 88999999999887543 3467778888899
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 348 LCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 348 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999887753 34677889999999999999999999998887743 3778888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHhCCCHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPN--VDEYNKLIQSLCLKALDWRTAEKL 501 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~~g~~~~A~~l 501 (540)
.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|+ +.|++++|.++
T Consensus 461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR-KLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999988764 447888999999999999999999999988765 66777 778888888877 78889999999
Q ss_pred HHHHHHCCCCCcHHHH-HHHHHHHHHH
Q 042609 502 LEDMRLKGLHLNGITR-ALIRAVKELE 527 (540)
Q Consensus 502 ~~~m~~~g~~p~~~t~-~ll~a~~~l~ 527 (540)
++++.+.+. .+..++ .+...+...+
T Consensus 539 ~~~~~~~~p-~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 539 LNQGLLLST-NDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHSS-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHhC
Confidence 999887752 244454 5555555443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.5e-23 Score=207.05 Aligned_cols=346 Identities=12% Similarity=0.030 Sum_probs=290.0
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+...+...+++++|...++...+..+. +..+|+.+...|.+.|++++|++.|+++.+.. +.+..+|..+..++.
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQNPL-----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 344556779999999999998887664 88999999999999999999999999998764 456778999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHH
Q 042609 244 RRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLAL 323 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 323 (540)
+.|++++|.+.|+++++.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...|..+...+... |++++|.
T Consensus 113 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~ 189 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQ-GEIWLAI 189 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 9999999999999999864 2345677788899999999999999999998865 22356666676676666 9999999
Q ss_pred HHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042609 324 DMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG 403 (540)
Q Consensus 324 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 403 (540)
..|+++...+. .+...|..+...+...|++++|...+++..... +.+..++..+..+|.+.|++++|...|+++.+.+
T Consensus 190 ~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 190 HHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999988643 245678889999999999999999999998753 3367889999999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 404 LKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNK 483 (540)
Q Consensus 404 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 483 (540)
. .+..+|..+...|.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++|...++++.+.. +.+..++..
T Consensus 268 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 344 (388)
T 1w3b_A 268 P-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSN 344 (388)
T ss_dssp S-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 3 257789999999999999999999999999874 5688999999999999999999999999998753 335778888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHHH
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLKGLHLNG--ITRALIRAVKEL 526 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ll~a~~~l 526 (540)
+...|. +.|++++|.+.++++.+. .|+. ..+.+...+.++
T Consensus 345 l~~~~~-~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 345 LASVLQ-QQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 888887 899999999999999875 4442 222554444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5e-23 Score=204.90 Aligned_cols=344 Identities=11% Similarity=-0.027 Sum_probs=292.1
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+.+.|++++|...++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 3556789999999999999887765 78889999999999999999999999988764 67889999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|++++|...|+++++.. +.+..+|..+..++.+.|++++|.+.|+++.+.+ |+.......+..++...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999998863 3456789999999999999999999999999865 66666555566666656999999999
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 405 (540)
|+++..... .+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+...
T Consensus 158 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 158 YLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 999987642 246779999999999999999999999999864 34677899999999999999999999999887632
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
-+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+++.+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 257899999999999999999999999999875 3467899999999999999999999999999753 45788899888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCc-HHHH-HHHHHHHHH
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGLHLN-GITR-ALIRAVKEL 526 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~-~ll~a~~~l 526 (540)
..+. +.|++++|.++++++.+.. |+ ..++ .+...+...
T Consensus 313 ~~~~-~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 313 NIKR-EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHH-TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTT
T ss_pred HHHH-HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHc
Confidence 8877 8999999999999998753 43 3333 555555433
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.2e-20 Score=188.29 Aligned_cols=328 Identities=12% Similarity=0.060 Sum_probs=266.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+.+.|++++|..+|+.+.+..+. +..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 445566778899999999999999987664 89999999999999999999999999998875 557889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-H---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPD-S---EKVGKI------------ISWFCKGGKAKEAHVVYTLAREKKMYPPQSV 304 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 304 (540)
++.+.|++++|.+.|+++.+.. |+ . ..+..+ ...+.+.|++++|...|+++.+.. ..+...
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999999864 44 3 555555 444899999999999999998765 345666
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 042609 305 VAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSV----- 379 (540)
Q Consensus 305 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l----- 379 (540)
+..+...+... |++++|...|+++.... +.+..++..+...|...|++++|...|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 77777777777 99999999999998764 3357789999999999999999999999998753 2344455544
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 380 -------ISAYSKAGDMTPAMEMLKLMRSRGLKPD-----VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYH 447 (540)
Q Consensus 380 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 447 (540)
...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 78899999999999999999875 344 4578889999999999999999999998764 44789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H-----------HHHhCC-----CHHHHHHHHHHH
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ-S-----------LCLKAL-----DWRTAEKLLEDM 505 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~-----------~~~~~g-----~~~~A~~l~~~m 505 (540)
.+..+|...|++++|...|+++.+. .|+.......+. . +....| +.+++.+.++++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999975 455443333332 1 111223 456777777764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.7e-20 Score=187.82 Aligned_cols=302 Identities=14% Similarity=0.077 Sum_probs=256.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 78899999999999999999999999998764 5679999999999999999999999999999875 356888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHH------------HHHhCCchHHHHHHHHHHhHhccCCCCcc
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQ----SVVAFLIS------------SLCQEDETVKLALDMLDDFSGEARKYAIK 339 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~------------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 339 (540)
+|.+.|++++|...|+++.+.+ |+. ..+..+.. .+... |++++|+..|+++.... +.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999998855 554 34444422 25555 99999999999998764 33667
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL----- 414 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----- 414 (540)
.+..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+++.+... .+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHH
Confidence 79999999999999999999999998763 45788999999999999999999999999987632 244445444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 415 -------MSGYANGGQMEEACEILNEAKKNHSRLS-----PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYN 482 (540)
Q Consensus 415 -------l~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 482 (540)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|...++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 788999999999999999999863 44 4578899999999999999999999998652 23678888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.+..++. ..|++++|.+.++++.+..
T Consensus 334 ~l~~~~~-~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 334 DRAEAYL-IEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHhC
Confidence 8888776 8999999999999999853
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3e-19 Score=184.19 Aligned_cols=341 Identities=11% Similarity=-0.036 Sum_probs=249.5
Q ss_pred cccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----
Q 042609 156 VTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---- 231 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---- 231 (540)
++...+..+..++.+.|++++|...|+.+.+..+. +..+|..+...|.+.|++++|+..|+++...+- ++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 110 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-----YSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASI 110 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGT
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchH
Confidence 45556777778888888888888888888877664 778888888888888888888888888866541 11
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q 042609 232 ---------------------------------------------------------------------------QETYY 236 (540)
Q Consensus 232 ---------------------------------------------------------------------------~~t~~ 236 (540)
...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (514)
T 2gw1_A 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHH
Confidence 22233
Q ss_pred HHHHHHHh---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 237 FTIEALSR---RKIFDWAWSVCEKMIE-----TGS--------LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 237 ~ll~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
.....+.. .|++++|..+++++++ ..- +.+..++..+...+...|++++|...|+++.+.+ |
T Consensus 191 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~ 268 (514)
T 2gw1_A 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--P 268 (514)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 33333333 7888888888888877 311 1234567777888888888888888888888765 4
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 380 (540)
+...+..+...+... |++++|...++.+..... .+...+..+...+...|++++|...++++.+... .+...+..+.
T Consensus 269 ~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 345 (514)
T 2gw1_A 269 RVNSYIYMALIMADR-NDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLA 345 (514)
T ss_dssp CHHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHH
Confidence 455555566666665 888888888888776532 2456678888888888888888888888887643 3566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS-RLS----PVTYHTLIRGYCK 455 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~ 455 (540)
..|...|++++|...++++.+... .+...+..+...|...|++++|...++++.+... .++ ...|..+...|..
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 888888888888888888876532 2567788888888888899999888888876421 111 3478888888888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 456 ---LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 456 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.|++++|...++++.+.. +.+...+..+...+. +.|++++|.+.+++..+...
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL-QQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCS
T ss_pred hhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhcc
Confidence 889999999988888653 235566666666665 78889999999988887643
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.7e-18 Score=178.45 Aligned_cols=351 Identities=11% Similarity=0.003 Sum_probs=283.3
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
......+.+.|++++|...|+.+.+.. |+..+|..+...|.+.|++++|+..|+++.+.+ +.+..+|..+..+
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 345557788899999999999998865 488999999999999999999999999998876 7899999999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCC----------------------------------------------------------
Q 042609 242 LSRRKIFDWAWSVCEKMIETGS---------------------------------------------------------- 263 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~---------------------------------------------------------- 263 (540)
+.+.|++++|...|+.+.+.+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999999999877642
Q ss_pred --------------------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCCC--------CHHHHHH
Q 042609 264 --------------------LPDSEKVGKIISWFCK---GGKAKEAHVVYTLARE-----KKMYP--------PQSVVAF 307 (540)
Q Consensus 264 --------------------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ 307 (540)
+.+...+..+...+.. .|++++|..+|+++.+ ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1114555555555554 8999999999999987 31122 1334555
Q ss_pred HHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 308 LISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG 387 (540)
Q Consensus 308 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 387 (540)
+...+... |++++|...|+++...... ...+..+...+...|++++|...++++.... +.+...+..+...|...|
T Consensus 243 ~~~~~~~~-~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLK-NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHS-SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 66666666 9999999999999887544 7778999999999999999999999998763 346778999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
++++|...|+++.+.... +...+..+...|...|++++|..+++++.+.. +.+...|..+...|.+.|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999887433 67789999999999999999999999998864 3467889999999999999999999999
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Q 042609 468 EMKDVGV-QPN----VDEYNKLIQSLCLK---ALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKEL 526 (540)
Q Consensus 468 ~m~~~g~-~p~----~~~~~~ll~~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l 526 (540)
++.+... .++ ...+..+...+. . .|++++|.+.++++.+.........+.+...+..+
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9875321 112 337777777776 7 89999999999999886533222223555544443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3.3e-17 Score=160.24 Aligned_cols=320 Identities=14% Similarity=0.073 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 444455555555555555555555554432 2334455555555555555555555555554432 12344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC---CHH-HHHHH------------HHHHHhCCchHHHHHHHHHHhHhccCCCCcccH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYP---PQS-VVAFL------------ISSLCQEDETVKLALDMLDDFSGEARKYAIKPF 341 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p---~~~-~~~~l------------l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 341 (540)
.+.|++++|...|+++.+.. | +.. .+..+ ...+... |++++|...++++..... .+...+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC-CchHHH
Confidence 55555555555555554432 3 211 11111 2344444 888888888888776542 355668
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH---------
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYT--------- 412 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------- 412 (540)
..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 888888889999999999999888763 446778888888999999999999999888776322 333332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 413 ---GLMSGYANGGQMEEACEILNEAKKNHSRLSP----VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 413 ---~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
.+...+.+.|++++|...++++.+... .+. ..+..+...|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 235568889999999999999888642 233 335567788999999999999999998752 23667777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHH
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELEE 528 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~~ 528 (540)
..+. +.|++++|.+.|++..+....-......+.++...+.+
T Consensus 314 ~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 314 EAYL-IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 7765 88999999999999987643222222255555555544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=3.8e-17 Score=169.52 Aligned_cols=338 Identities=12% Similarity=0.049 Sum_probs=248.3
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQET--- 234 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t--- 234 (540)
...+..+...+...|++++|...|+.+.+..+. +..+|..+...|...|++++|+..|+.+... |+...
T Consensus 59 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 130 (537)
T 3fp2_A 59 PVFYSNISACYISTGDLEKVIEFTTKALEIKPD-----HSKALLRRASANESLGNFTDAMFDLSVLSLN---GDFDGASI 130 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CCCChHHH
Confidence 345666777777778888888888888777665 7778888888888888888888888644222 22110
Q ss_pred ------------------------------------------------------------------HHHHHHHHH-----
Q 042609 235 ------------------------------------------------------------------YYFTIEALS----- 243 (540)
Q Consensus 235 ------------------------------------------------------------------~~~ll~~~~----- 243 (540)
...+...+.
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 011111111
Q ss_pred ---hCCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 244 ---RRKIFDWAWSVCEKMIETGSLPD--------SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 244 ---~~~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
..+++++|..+++.+++.. |+ ..++..+...+...|++++|...|+.+.+.. |+...+..+...+
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHH
Confidence 1136777888888877653 33 2356677788889999999999999998865 6655666555555
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
... |++++|...|++...... .+..++..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 287 ~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 287 ADK-ENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp CCS-SCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHh-cCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 555 999999999999887643 356678899999999999999999999998764 33567888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------C
Q 042609 393 MEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH-----SRLSPVTYHTLIRGYCKL----------E 457 (540)
Q Consensus 393 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~----------g 457 (540)
...|+++.+.. +.+...+..+...|...|++++|...++++.+.. .......+..+...|.+. |
T Consensus 364 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99999988774 2356788899999999999999999999987642 112223355556777777 9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 458 EFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
++++|...|+++.+.. +.+...+..+...|. +.|++++|.+.|++..+......
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKL-QMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcH
Confidence 9999999999998653 235677777777776 88999999999999988765443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.1e-16 Score=156.46 Aligned_cols=309 Identities=12% Similarity=0.045 Sum_probs=251.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+.+.+..+. +..+|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 445566778889999999999999987765 78999999999999999999999999998764 457789999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLP----DSEKVGKI------------ISWFCKGGKAKEAHVVYTLAREKKMYPPQSV 304 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 304 (540)
.+...|++++|...++.+.+. .| +...+..+ ...+...|++++|..+|+++.+.. ..+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 999999999999999999886 34 34444444 578999999999999999998865 234556
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH-------
Q 042609 305 VAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFN------- 377 (540)
Q Consensus 305 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~------- 377 (540)
+..+...+... |++++|...+++..... +.+...+..+...+...|++++|...|++..+... .+...+.
T Consensus 157 ~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKE-GEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHH
Confidence 66666666666 99999999999998764 33567789999999999999999999999987532 2333333
Q ss_pred -----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 378 -----SVISAYSKAGDMTPAMEMLKLMRSRGLKPDV----YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHT 448 (540)
Q Consensus 378 -----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 448 (540)
.+...+.+.|++++|...++++.+.... +. ..+..+...|...|++++|...+++..+.. +.+..+|..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366789999999999999999886322 22 235557788999999999999999999864 447889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 042609 449 LIRGYCKLEEFDCALKLLNEMKDVGVQPN-VDEYNKLI 485 (540)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 485 (540)
+...|.+.|++++|...|+++.+. .|+ ...+..+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 347 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 999999999999999999999976 455 34444433
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=189.05 Aligned_cols=115 Identities=13% Similarity=0.156 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRS---RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 450 IRGYCKLEEF-DCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 450 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 6666665553 4555666666666666666666655544
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=188.61 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=96.2
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMIS---EGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL 414 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 414 (540)
..||+++|++||+.|++++|..+|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45688888888888888888888877653 467888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 415 MSGYANGGQ-MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL 456 (540)
Q Consensus 415 l~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (540)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 888888886 467888888888888888888888888766554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.7e-16 Score=151.92 Aligned_cols=282 Identities=13% Similarity=0.008 Sum_probs=172.6
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.+...|++++|..+|+.+.+..+. +...+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPF-----HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-----CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhh
Confidence 344456666666666665554443 44455555555566666666666666665542 334455555555555555
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 247 -IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 247 -~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
++++|...+++..+.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 105 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------- 155 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---------------------------- 155 (330)
T ss_dssp SCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----------------------------
T ss_pred hhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----------------------------
Confidence 5666666666555543 2234445555555555555555555555544432
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG-- 403 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 403 (540)
.. +...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+..
T Consensus 156 --------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 156 --------KG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp --------TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred --------cc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 11 23345556666677777777777777776653 3356677777777777788888877777766531
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042609 404 ------LKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 404 ------~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
...+..++..+...|...|++++|...++++.+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCc
Confidence 12335677777888888888888888888877754 3356777788888888888888888888877543 224
Q ss_pred HHHHHHHHHHHHHhCCCH
Q 042609 478 VDEYNKLIQSLCLKALDW 495 (540)
Q Consensus 478 ~~~~~~ll~~~~~~~g~~ 495 (540)
...+..+..++....|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 555665655554455553
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.1e-16 Score=152.63 Aligned_cols=284 Identities=10% Similarity=-0.020 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44556666666666677777777777766543 3344445555566666666666666666666542 233445555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCH
Q 042609 276 WFCKGG-KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 276 ~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (540)
.+...| ++++|...|+++.+ .. +.+...|..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~------------------------------------~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATT------------------------------------LE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHT------------------------------------TC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHH------------------------------------hC-CccHHHHHHHHHHHHHccCH
Confidence 555555 55555555554433 22 11345577888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
++|...++++.+.. +.+...+..+...|...|++++|...+++..+... .+...+..+...|...|++++|...++++
T Consensus 142 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 142 DQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999998764 33566777899999999999999999999988743 36789999999999999999999999998
Q ss_pred HHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 435 KKNH--------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 435 ~~~g--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.+.. ...+..+|..+...|.+.|++++|...+++..+.. +.+...+..+...+. +.|++++|.+.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHS-LMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH-HHTCHHHHHHHHHTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence 8742 13346789999999999999999999999998653 235667777777766 8899999999999998
Q ss_pred HCCCCCcHHHH-HHHHHH
Q 042609 507 LKGLHLNGITR-ALIRAV 523 (540)
Q Consensus 507 ~~g~~p~~~t~-~ll~a~ 523 (540)
+.... +...+ .+..++
T Consensus 298 ~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 298 GLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp TTCSC-CHHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHH
Confidence 75432 23333 444444
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.9e-17 Score=159.39 Aligned_cols=304 Identities=13% Similarity=0.008 Sum_probs=178.1
Q ss_pred cChhhHHH-HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 172 VGKKEVYA-LWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 172 ~~~~~A~~-~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
+++++|.. .|+...+..+.. ...+...|..+...|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 56666766 665444333221 11134567788888888888999999888888764 5577788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhH
Q 042609 251 AWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFS 330 (540)
Q Consensus 251 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 330 (540)
|...++++++.. +.+..++..+...|...|++++|...|+++.... |+.......+ +.....
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~-------- 178 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAGG-------- 178 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhhh--------
Confidence 888888888764 3567788888888888888888888888887754 3222111000 000000
Q ss_pred hccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042609 331 GEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY 409 (540)
Q Consensus 331 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 409 (540)
..+ ...+. .+..+...|++++|...|+++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+..
T Consensus 179 ---~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 179 ---AGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ---hcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 000 00011 1122225566666666666665542211 35566666666666666666666666665542 12455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP----------NVD 479 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~ 479 (540)
+|..+...|...|++++|...++++.+.. +.+...|..+...|.+.|++++|...|+++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 66666666666666666666666666543 2345666666666666666666666666665321110 145
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Q 042609 480 EYNKLIQSLCLKALDWRTAEKLLE 503 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A~~l~~ 503 (540)
.|..+..++. ..|++++|..+++
T Consensus 332 ~~~~l~~~~~-~~g~~~~A~~~~~ 354 (368)
T 1fch_A 332 IWSTLRLALS-MLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHH-HHTCGGGHHHHHT
T ss_pred HHHHHHHHHH-HhCChHhHHHhHH
Confidence 5666665554 5566666666655
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.5e-16 Score=154.88 Aligned_cols=295 Identities=11% Similarity=-0.012 Sum_probs=201.0
Q ss_pred HHhcCChHHHHH-HHHHHhhCCC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 207 FSKLGKGKAAFE-VFNKFGDYGC---VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 207 ~~~~g~~~~A~~-~f~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
+...|++++|++ .|++.....- ..+...+..+...+.+.|++++|...++++++.. +.+..++..+..+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344588899998 8887654321 1134567788888999999999999999998874 3577888889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 283 AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 283 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
+++|...|+++.+.+ ..+...+..+...+... |++++|...++++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 999999999888765 23445555555555555 7777777777776654322 11111111000 00
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 363 KMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLK-PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 363 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
. ..+. ..+. .+..+...|++++|...|+++.+.... ++..++..+...|.+.|++++|...++++.+.. +.
T Consensus 178 -~----~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0001 1111 233334889999999999999876322 158899999999999999999999999998864 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---------
Q 042609 442 SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHL--------- 512 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p--------- 512 (540)
+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|. +.|++++|.+.++++.+.....
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI-NLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 67899999999999999999999999998653 235677877877776 8899999999999998653322
Q ss_pred -cHHHH-HHHHHHHHHHH
Q 042609 513 -NGITR-ALIRAVKELEE 528 (540)
Q Consensus 513 -~~~t~-~ll~a~~~l~~ 528 (540)
...++ .+..++..+++
T Consensus 328 ~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHhCC
Confidence 13344 67777776665
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=2.1e-15 Score=156.33 Aligned_cols=335 Identities=13% Similarity=0.020 Sum_probs=257.0
Q ss_pred cchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 158 SGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 158 ~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
...+..+...+.+.|++++|...|+.+.+..+. +..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-----EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHH
Confidence 455677788889999999999999999998876 89999999999999999999999999998865 567889999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHH-------
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK------KMYPPQSV------- 304 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~------- 304 (540)
+..++...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+... ...|+...
T Consensus 99 la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 999999999999999999633 32 2322 222344555566667788888777442 11222222
Q ss_pred ----------------------HHHHHHHHHhC--------CchHHHHHHHHHHhHhccCCCC------cccHHHHHHHH
Q 042609 305 ----------------------VAFLISSLCQE--------DETVKLALDMLDDFSGEARKYA------IKPFSSVIRSL 348 (540)
Q Consensus 305 ----------------------~~~ll~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~ 348 (540)
+...+..+... .|++++|..+|+++........ ..++..+...+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 22222222221 1478999999999886542210 22466777888
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 349 CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 349 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
...|++++|...|+++.+. .|+...+..+...|...|++++|...|+++.+... .+..+|..+...|...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999999985 45588899999999999999999999999987643 36788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..++++.+.. +.+...|..+...|...|++++|..+++++.+.. +.+...+..+...+. ..|++++|.+.++++.+.
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT-DRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHc
Confidence 9999999864 3356889999999999999999999999998653 234567777776665 889999999999998765
Q ss_pred C
Q 042609 509 G 509 (540)
Q Consensus 509 g 509 (540)
.
T Consensus 408 ~ 408 (537)
T 3fp2_A 408 E 408 (537)
T ss_dssp H
T ss_pred C
Confidence 3
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=3e-16 Score=154.31 Aligned_cols=277 Identities=11% Similarity=-0.029 Sum_probs=181.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|...|+++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888889999999999999999988764 5678889999999999999999999999988764 346788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
+|...|++++|...|+++.+.. |+.......+ + .....+..+...+.+.|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------~------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------K------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhh-------c------------------cchHHHHHHHHHHhhhhhHH
Confidence 9999999999999998887643 2211100000 0 01223444556666667777
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPP-PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+|..+++++.+.... .+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777776654322 146667777777777777777777777766552 225667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 042609 435 KKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV---Q--------PNVDEYNKLIQSLCLKALDWRTAEKLLE 503 (540)
Q Consensus 435 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~ll~~~~~~~g~~~~A~~l~~ 503 (540)
.+.. +.+..+|..+...|.+.|++++|...|+++.+... . .+...|..+-.++. ..|+.+.+.++.+
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS-LMDQPELFQAANL 351 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH-HHTCHHHHHHHHT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH-HcCcHHHHHHHHH
Confidence 6653 23466777777777777777777777777663210 0 02455666666554 5667766666554
Q ss_pred H
Q 042609 504 D 504 (540)
Q Consensus 504 ~ 504 (540)
+
T Consensus 352 ~ 352 (365)
T 4eqf_A 352 G 352 (365)
T ss_dssp T
T ss_pred h
Confidence 3
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=2e-15 Score=145.63 Aligned_cols=274 Identities=14% Similarity=0.020 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFC 278 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 278 (540)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555556666666666666655443 3345555555566666666666666666655542 234555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHH--HHHcCCCHH
Q 042609 279 KGGKAKEAHVVYTLAREKKMYPPQSVVAFLI-SSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIR--SLCRMKDVH 355 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~ 355 (540)
..|++++|.+.|+++.+.. |+.......+ ... ++......+.. .+...|+++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTTTC-------------------------------------------CCTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 6666666666666665533 2211111110 000 00000001101 133344444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+|...++++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444332 1234445555555555555555555555544432 1134455555555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 042609 436 KNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP-----------NVDEYNKLIQSLCLKALDWRTAEKLLE 503 (540)
Q Consensus 436 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~g~~~~A~~l~~ 503 (540)
+.. +.+..+|..+...|.+.|++++|.+.++++.+..... +...|..+...+. +.|++++|.++++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN-VMNRPDLVELTYA 310 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH-HTTCHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH-hcCCHHHHHHHHH
Confidence 432 2234555555555555555555555555554321110 2344444444443 5555555555554
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=8.2e-17 Score=156.75 Aligned_cols=286 Identities=14% Similarity=0.117 Sum_probs=137.9
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
+.|+.++|.+.++++.. ..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~~~----------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHH
Confidence 34678899999998743 35999999999999999999999976 367889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
+|..+++..++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..+-..+... |.+++|..+|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~-g~yeeA~~~Y~~a 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC-----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHh
Confidence 999988877764 4667889999999999999999998885 37777888888888887 9999999999976
Q ss_pred HhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042609 330 SGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVY 409 (540)
Q Consensus 330 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 409 (540)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+. ....
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHh
Confidence 46999999999999999999999998 278999999999999999999966554422 3444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL--EEFDCALKLLNEMKDVGVQP------NVDEY 481 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~ 481 (540)
-...++..|.+.|++++|..+++...... +.....|+-|..+|++- ++..+.+++|.. .-+++| +...|
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 45579999999999999999999998765 56678888888888875 344444444432 222222 34568
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 482 NKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 482 ~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..+...|+ +-++++.|.. .|.++
T Consensus 286 ~e~~~ly~-~~~e~d~A~~---tm~~h 308 (449)
T 1b89_A 286 AELVFLYD-KYEEYDNAII---TMMNH 308 (449)
T ss_dssp HHHHHHHH-HTTCHHHHHH---HHHHS
T ss_pred HHHHHHHH-hhchHHHHHH---HHHhC
Confidence 88887777 7889998886 44444
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=1.3e-15 Score=149.80 Aligned_cols=262 Identities=8% Similarity=-0.044 Sum_probs=178.3
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+.+.|++++|...|+.+.+..+. +..+|..+...|...|++++|+..|+++.+.. +.+..+|..+..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-----DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 555666788899999999999999998775 89999999999999999999999999998865 557899999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDS-----------EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLI 309 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 309 (540)
++...|++++|...++++++.. |+. ..+..+...|.+.|++++|..+|+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------ 201 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL------------------ 201 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHH------------------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH------------------
Confidence 9999999999999999998753 221 112223444444445555554444
Q ss_pred HHHHhCCchHHHHHHHHHHhHhccCC-CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 310 SSLCQEDETVKLALDMLDDFSGEARK-YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD 388 (540)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 388 (540)
++...... .+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+..+|.+.|+
T Consensus 202 ------------------~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 202 ------------------EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------------------HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ------------------HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 44443211 134455566666666666666666666666542 3356666777777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcC
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR-----------LSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~~~~~li~~~~~~g 457 (540)
+++|...|+++.+... .+..+|..+..+|.+.|++++|...|+++.+.... .+...|..+..++...|
T Consensus 263 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 7777777776665521 24666667777777777777777777766653200 12466777777777777
Q ss_pred CHHHHHHHHHH
Q 042609 458 EFDCALKLLNE 468 (540)
Q Consensus 458 ~~~~A~~~~~~ 468 (540)
+.+.+..+..+
T Consensus 342 ~~~~a~~~~~~ 352 (365)
T 4eqf_A 342 QPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHTT
T ss_pred cHHHHHHHHHh
Confidence 77777766554
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.8e-15 Score=143.70 Aligned_cols=252 Identities=14% Similarity=0.151 Sum_probs=163.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQ--ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
......|++++|+..+++.... .|+. .....+.++|...|+++.|...++. .-.|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3344567777777777765443 2332 3445566777777777777665533 124556667777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHH
Q 042609 283 AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLS 362 (540)
Q Consensus 283 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 362 (540)
.++|.+.++++...+..|+...+...+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776655565555444443333333777777777765 2345567777777778888888888888
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 363 KMISEGPPPGNAVF---NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 363 ~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|...|+++.+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777653 332211 12233344457778888888777766 23467777777777778888888888888777653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 042609 440 RLSPVTYHTLIRGYCKLEEFDC-ALKLLNEMKDV 472 (540)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 472 (540)
+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3466777777777777777765 46777777654
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3e-15 Score=144.29 Aligned_cols=278 Identities=8% Similarity=-0.062 Sum_probs=209.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+-.+...+...|++++|..+|+.+.+..+. +..+|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 344555777889999999999999887765 88999999999999999999999999998864 557889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCchH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISS-LCQEDETV 319 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~ 319 (540)
.+...|++++|.+.++++.+... .+...+..+.... |+......+-.. .....|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 99999999999999999998642 1222222221100 111111111122 12223788
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
++|...++++...... +...+..+...|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...|+++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888887765432 56678888888889999999999999888763 346778888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042609 400 RSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL-----------SPVTYHTLIRGYCKLEEFDCALKLLNE 468 (540)
Q Consensus 400 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (540)
.+.. +.+..++..+...|.+.|++++|...++++.+..... +...|..+..+|.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7763 2367888899999999999999999999888753221 467889999999999999999998875
Q ss_pred HH
Q 042609 469 MK 470 (540)
Q Consensus 469 m~ 470 (540)
..
T Consensus 312 ~l 313 (327)
T 3cv0_A 312 NV 313 (327)
T ss_dssp CS
T ss_pred HH
Confidence 43
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=2.2e-12 Score=132.14 Aligned_cols=317 Identities=11% Similarity=0.033 Sum_probs=261.1
Q ss_pred HHHHHHHh----hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHH
Q 042609 163 ALLKAICS----SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK----LGKGKAAFEVFNKFGDYGCVANQET 234 (540)
Q Consensus 163 ~li~~~~~----~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~p~~~t 234 (540)
.+...+.. .++.++|...|++..+.+ +...+..|...|.. .+++++|+..|++..+.| +...
T Consensus 80 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 149 (490)
T 2xm6_A 80 VLGLRYMNGEGVPQDYAQAVIWYKKAALKG-------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG 149 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 34445555 688999999999887642 67888889999988 889999999999998875 5677
Q ss_pred HHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042609 235 YYFTIEALSR----RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK----GGKAKEAHVVYTLAREKKMYPPQSVVA 306 (540)
Q Consensus 235 ~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 306 (540)
+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +...+.
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 223 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQL 223 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 789999999999999875 67888889999988 899999999999998865 344555
Q ss_pred HHHHHHHh---CCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 307 FLISSLCQ---EDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSV 379 (540)
Q Consensus 307 ~ll~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 379 (540)
.+-..+.. ..++.++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..|
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~L 297 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYL 297 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 55555543 1389999999999988765 45567777777777 899999999999998764 55677788
Q ss_pred HHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 380 ISAYSKA-----GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG---QMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 380 i~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
...|... +++++|...|++..+.| +...+..+-..|...| +.++|...|++..+.| +...+..|..
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 371 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGN 371 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 8888887 89999999999999875 5667778888887766 8899999999999975 7888999999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 042609 452 GYCK----LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 452 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A~~l~~~m~~~g~~ 511 (540)
.|.. .+++++|...|++..+.| +...+..|-..|. + .+++++|.+.|++..+.|..
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY-YGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9998 899999999999999875 5667777776665 5 68999999999999998854
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=5.4e-12 Score=129.20 Aligned_cols=307 Identities=12% Similarity=0.012 Sum_probs=255.8
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK----LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR-- 244 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~-- 244 (540)
.+++++|...|++..+.+ +...+..|...|.. .+++++|++.|++..+.| +...+..+...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG-------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 678899999999887642 67899999999999 999999999999998865 66778888888888
Q ss_pred --CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---C
Q 042609 245 --RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK----GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ---E 315 (540)
Q Consensus 245 --~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~ 315 (540)
.+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.+ +...+..+-..+.. .
T Consensus 126 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCC
Confidence 789999999999998875 56778888888887 789999999999998865 35555555555554 1
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AG 387 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 387 (540)
.++.++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+-..|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 389999999999988765 45667778888876 889999999999998764 45677777777877 89
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANG-----GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---EF 459 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~ 459 (540)
+.++|...|++..+.| +...+..+-..|... ++.++|...+++..+.| +...+..|...|...| +.
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 9999999999998774 566777888888887 89999999999999986 6678888888888767 88
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 042609 460 DCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A~~l~~~m~~~g 509 (540)
++|.+.|++..+.| +...+..+-..|. . .+++++|.++|++..+.|
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999874 6677777777665 5 689999999999999876
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=2.7e-14 Score=135.46 Aligned_cols=274 Identities=12% Similarity=0.023 Sum_probs=210.8
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.....|.+..|...++.+....+. ......-.+..+|...|+++.|+..++.. -+|+..++..+...+...+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~----~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPE----RDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHH----HHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHhcccCCch----hhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 334568888999888765443332 11346677889999999999999877552 3678889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
+.++|.+.+++++..+..| +...+..+...|.+.|++++|.+.+++ ..+...+..+...+.+. |+.++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~-g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL-DRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 9999999999999877545 566677788999999999999999987 35567777777787877 999999999
Q ss_pred HHHhHhccCCCCcccH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 326 LDDFSGEARKYAIKPF---SSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
|+++.... |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|++..+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998764 443211 22334455669999999999999987 4568889999999999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 403 GLKPDVYTYTGLMSGYANGGQMEE-ACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALK 464 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 464 (540)
.. -+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..
T Consensus 230 ~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 DS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 43 277889999999999999876 678999988864 44332 2334445555555443
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=1.7e-12 Score=134.32 Aligned_cols=335 Identities=9% Similarity=-0.018 Sum_probs=225.0
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..++. +.+.|+.++|..+|+.+.+..+. +...|..++..+.+.|++++|..+|++..... |+...|...+..
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~-----~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQFPS-----SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 33444 35678888888999888887665 78888888888888899999999998888753 677777666643
Q ss_pred H-HhCCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042609 242 L-SRRKIFDWAWS----VCEKMIET-GSLP-DSEKVGKIISWFCK---------GGKAKEAHVVYTLAREKKMYPPQSVV 305 (540)
Q Consensus 242 ~-~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~ 305 (540)
. ...|+++.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..+.........|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34566666554 66665442 4433 45667776666554 67788888888877662111111222
Q ss_pred HHHHHH---H---------HhCCchHHHHH--------------------------------------------------
Q 042609 306 AFLISS---L---------CQEDETVKLAL-------------------------------------------------- 323 (540)
Q Consensus 306 ~~ll~~---~---------~~~~~~~~~a~-------------------------------------------------- 323 (540)
...... + ....+.+..|.
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 211110 0 00112233333
Q ss_pred ----------HHHHHhHhccCCCCcccHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 324 ----------DMLDDFSGEARKYAIKPFSSVIRSLCR-------MKDVH-------GAKTLLSKMISEGPPPGNAVFNSV 379 (540)
Q Consensus 324 ----------~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~l 379 (540)
.+|++..... +.+...|......+.+ .|+++ +|..+|++..+.-.+.+...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3333333221 1133345555555554 68877 899999998863234467889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG-YCKL 456 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~ 456 (540)
+..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 99999999999999999999886 454 3578888888889999999999999998863 2233333333222 3468
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 457 EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
|+.++|..+|++..+.. +-+...|..++..+. +.|+.++|..+|++....+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~-~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHSCC
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-hCCCHhhHHHHHHHHHhccC
Confidence 99999999999988642 235777888887665 88999999999999988753
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=2.5e-15 Score=146.39 Aligned_cols=260 Identities=15% Similarity=0.123 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
+..-+.||. +.|+.++|.++++++. +..+|..+..++.+.|++++|.+.|.+ .+|..+|..++..
T Consensus 6 ~~a~~~ll~---~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ 70 (449)
T 1b89_A 6 TSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH---HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHH
Confidence 334444543 6788999999999983 234999999999999999999999965 2677899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (540)
+...|++++|+++++..++. .++..+.+.++.+|.+. |+++++.++++ .|+..+|..+...|...|++++
T Consensus 71 ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred HHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999988877663 45567788889898887 99999988874 3667799999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
|...|..+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999977 37999999999999999999999988 2889999999999999999999665544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042609 437 NHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLED 504 (540)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~ 504 (540)
+..++.-...++..|.+.|++++|..+++...... .-....|+-|--.|+ +- +.++..+-++.
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~-ky-~p~k~~ehl~~ 265 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS-KF-KPQKMREHLEL 265 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH-TT-CHHHHHHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH-hc-CHHHHHHHHHH
Confidence 23344556679999999999999999999988554 445667777766665 33 34544444443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-12 Score=121.60 Aligned_cols=226 Identities=17% Similarity=0.107 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCC----HHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS--LPD----SEK 269 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~ 269 (540)
....|..+...+...|++++|+..|++..+.. .+..+|..+..++...|++++|...++..++... .++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888888889999999999999888776 7788888888889999999999999888876531 122 577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHH
Q 042609 270 VGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLC 349 (540)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 349 (540)
+..+...|.+.|++++|...|+++.+.. |+... +... |++++|...++.+....
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------~~~~-~~~~~a~~~~~~~~~~~---------------- 135 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADI-------LTKL-RNAEKELKKAEAEAYVN---------------- 135 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH-------HHHH-HHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHH-------HHHH-hHHHHHHHHHHHHHHcC----------------
Confidence 8888888888888888888888877644 33211 1122 55555555555544321
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042609 350 RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACE 429 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 429 (540)
+.+...+..+...|...|++++|...|++..+... .+..+|..+...|...|++++|..
T Consensus 136 --------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 136 --------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 11233444445555555555555555555544321 134555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 430 ILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 430 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.++++.+.. +.+...|..+...|.+.|++++|...|++..+
T Consensus 195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555542 22355555666666666666666666665553
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=2e-12 Score=131.67 Aligned_cols=344 Identities=13% Similarity=0.002 Sum_probs=222.5
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhccc----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----C--
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEK----EKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY-----G-- 227 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g-- 227 (540)
..|+.+...+...|++++|.+.|++..++.+. ........+|+.+...|...|++++|+..|++..+. +
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 35677777888899999999999887665322 112235789999999999999999999999887542 1
Q ss_pred CCCCHHHHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC-
Q 042609 228 CVANQETYYFTIEALSR--RKIFDWAWSVCEKMIETGSLPDSEKVGKIISW---FCKGGKAKEAHVVYTLAREKKMYPP- 301 (540)
Q Consensus 228 ~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~- 301 (540)
-.....++.....++.. .+++++|...|++.++.. +-+...+..+..+ +...++.++|.+.|++..+.+ |+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~ 208 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN 208 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence 11235667666555554 457999999999998864 2345555555444 445678889999999888755 43
Q ss_pred HHHHHHHHHHHH---hCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 302 QSVVAFLISSLC---QEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNS 378 (540)
Q Consensus 302 ~~~~~~ll~~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 378 (540)
...+..+-..+. ...++.++|...+++..... +.+...+..+...|.+.|++++|...+++..+.. +-+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 333333322222 23377889999999887654 3355668889999999999999999999998763 335666666
Q ss_pred HHHHHHhc-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 379 VISAYSKA-------------------GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 379 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
+...|... +..++|...|+...+... .+..++..+...|...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66555432 235677777877766532 2456788888999999999999999999988753
Q ss_pred CCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHHhCC
Q 042609 440 RLSP--VTYHTLIR-GYCKLEEFDCALKLLNEMKDVGV-----------------------QPNVDEYNKLIQSLCLKAL 493 (540)
Q Consensus 440 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~-----------------------~p~~~~~~~ll~~~~~~~g 493 (540)
.+.. ..+..+.. .+...|+.++|+..|++..+... +.+..+|+.+-..|. ..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~-~~g 444 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE-LNE 444 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH-HHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcC
Confidence 3222 12333332 24578999999999988875421 112234444443333 455
Q ss_pred CHHHHHHHHHHHHHCC
Q 042609 494 DWRTAEKLLEDMRLKG 509 (540)
Q Consensus 494 ~~~~A~~l~~~m~~~g 509 (540)
++++|++.|++.++.|
T Consensus 445 ~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 445 KMQQADEDSERGLESG 460 (472)
T ss_dssp HCC-------------
T ss_pred CHHHHHHHHHHHHhcC
Confidence 6666666666665544
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1e-12 Score=121.64 Aligned_cols=232 Identities=14% Similarity=0.067 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSL 312 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 312 (540)
..|..+...+...|++++|..++++.++.. .+..++..+...|...|++++|...|+.+.+.. |+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~----------- 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--RE----------- 70 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cc-----------
Confidence 445556666666666666666666666654 555666666666666666666666666544321 00
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
...+.. .....+..+...+...|++++|...|++.... .|+. ..+.+.|++++|
T Consensus 71 --~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 71 --MRADYK---------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp --TTCCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHH
T ss_pred --cccchH---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHH
Confidence 000000 00345777888888889999999999888874 3442 456677899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 393 MEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 393 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
...++.+..... .+...+..+...|...|++++|...++++.+.. +.+..+|..+...|.+.|++++|...+++..+.
T Consensus 125 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999988732 256778889999999999999999999999875 447889999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 473 GVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 473 g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
. +.+...|..+...+. +.|++++|.+.+++..+..
T Consensus 203 ~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQI-AVKEYASALETLDAARTKD 237 (258)
T ss_dssp C-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhC
Confidence 3 235677777777776 8899999999999998754
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.3e-11 Score=125.61 Aligned_cols=308 Identities=14% Similarity=0.010 Sum_probs=217.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----C
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDY--------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET-----G 262 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g 262 (540)
....||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++.++. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4578999999999999999999999887541 12345778999999999999999999999987653 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHH--hCCchHHHHHHHHHHhHhccCC
Q 042609 263 -SL-PDSEKVGKIISWFCKG--GKAKEAHVVYTLAREKKMYPPQSVVA-FLISSLC--QEDETVKLALDMLDDFSGEARK 335 (540)
Q Consensus 263 -~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~--~~~~~~~~a~~~~~~m~~~~~~ 335 (540)
.. ....++..+..++.+. +++++|...|++..+.+ |+...+. .+...+. ...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 2356666666566554 57999999999998865 5544333 2222221 1226667888888887765322
Q ss_pred CCcccHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042609 336 YAIKPFSSVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTY 411 (540)
Q Consensus 336 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 411 (540)
+...+..+...+.. .++.++|..++++..... +.+..++..+...|.+.|++++|...+++..+.... +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 34445555545544 467889999999988763 446778899999999999999999999998876322 56667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 412 TGLMSGYANG-------------------GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 412 ~~ll~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
..+..+|... +..++|...+++..+.. +.+..++..+...|...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555432 33567888888877754 335567888999999999999999999999876
Q ss_pred CCCCCHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 473 GVQPNVD--EYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 473 g~~p~~~--~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
...+... .+..+...+..+.|++++|++.|++..+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4433221 122222222237889999999999988753
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=4.2e-13 Score=125.81 Aligned_cols=250 Identities=12% Similarity=0.033 Sum_probs=165.9
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
..+++++|...|+.+.+..+. ....+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 347788999999988875321 000157889999999999999999999999998765 457889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHh
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDF 329 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 329 (540)
+|...+++.++.. +.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+... |++++|...++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQK-LDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 9999999998864 3467888999999999999999999999988754 5444444444333444 7778888877666
Q ss_pred HhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042609 330 SGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP---GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKP 406 (540)
Q Consensus 330 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 406 (540)
.... .++.. ...++..+...++.++|...+++........ +...+..+...|.+.|++++|...|++..+.. |
T Consensus 171 ~~~~-~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 5542 22222 2335556666666677777777665431110 13455555566666666666666666655442 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 407 DVYTYTGLMSGYANGGQMEEACEIL 431 (540)
Q Consensus 407 ~~~t~~~ll~~~~~~g~~~~A~~~~ 431 (540)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 112233444455555554443
No 37
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=9.7e-11 Score=121.15 Aligned_cols=218 Identities=11% Similarity=0.027 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------CCchHH-------HHHHHHHHhHhccCCCCcccHHHHHHHHHcC
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQ------EDETVK-------LALDMLDDFSGEARKYAIKPFSSVIRSLCRM 351 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 351 (540)
+|..+|++..... .-+...|......+.. ..|+.+ +|..+|++....-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777766643 2345556555555443 137766 8999999987632233566788999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHH
Q 042609 352 KDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS-GYANGGQMEEAC 428 (540)
Q Consensus 352 g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~A~ 428 (540)
|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+... .+...|..... .+...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999985 443 35899999999999999999999999987622 12233322222 234689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 429 EILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-VQPN--VDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
.+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.. ..+.|+.+.+.++++++
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~-e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF-ESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH-HHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 9999998863 3468899999999999999999999999999763 2332 4467777764 45789999999999999
Q ss_pred HHC
Q 042609 506 RLK 508 (540)
Q Consensus 506 ~~~ 508 (540)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=8.8e-12 Score=115.23 Aligned_cols=200 Identities=12% Similarity=0.002 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4667777777777888888888887776653 4466677777777777777777777777776653 2356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQS-VVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
|...|++++|.++|+++.+.+..|+.. .+..+...+... |++++|...|++...... .+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHH
Confidence 777777777777777665522223222 222222222222 444444444444433221 12233344444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRS 401 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (540)
+|...++++.+.. +.+...+..+...|.+.|++++|.++++++.+
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444443321 12333344444444444444444444444433
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=6e-11 Score=111.21 Aligned_cols=223 Identities=14% Similarity=0.001 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR----RKIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
+..++..+...|...|++++|++.|++..+. -+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666777777777777777777777776662 344566666666666 667777777776666654 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHH
Q 042609 272 KIISWFCK----GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRS 347 (540)
Q Consensus 272 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 347 (540)
.+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------------------------------------~~~a~~~lg~~ 119 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------------------------------------YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------------------------------------CccHHHHHHHH
Confidence 66666665 556666655555544432 12223333333
Q ss_pred HHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 348 LCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYA 419 (540)
Q Consensus 348 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 419 (540)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+-..|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 333 455555555555555443 33444455555555 556666666665555542 3445555555555
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 042609 420 N----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDV 472 (540)
Q Consensus 420 ~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 472 (540)
. .+++++|...+++..+.+ +...+..+...|.+ .+++++|.+.|++..+.
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5 566666666666655553 24455555555555 55666666666655544
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=5.5e-11 Score=129.12 Aligned_cols=257 Identities=15% Similarity=0.125 Sum_probs=178.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
...+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAK 1113 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHH
Confidence 44455566667888888888876432 3334444443 667788888887754 33667778888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
++.+.|++++|.+.|.+. -|...|..++..+.+.|++++|.+.|...++.. ++....+.+..+|++. ++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl-~rle 1184 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT-NRLA 1184 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh-cCHH
Confidence 888888888888888552 466677778888888888888888887766654 2222233466666666 6666
Q ss_pred HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
+...+.+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++..
T Consensus 1185 ele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 5443321 234455667778888888888888888874 367888888888888888888887652
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 401 SRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 401 ~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.
T Consensus 1249 ------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1249 ------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred ------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 667788787888888887777776553 233566667778888888888888888877664
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=1.5e-12 Score=117.72 Aligned_cols=208 Identities=12% Similarity=0.039 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 66788888888888889999998888887764 5577888888888888888888888888888764 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
+|.+.+. .. .. ..... |++++|+..|++..+.... +...+..+...+...|+++
T Consensus 82 ~~~~~~~-------------~~--~~---------~~~~~-g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALYR-------------QA--ED---------RERGK-GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHH-------------TC--SS---------HHHHH-HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhh-------------hh--hh---------hcccc-cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 7766610 00 00 00011 4455555555544443211 2334555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+|...|++..+.. .+...+..+..+|...|++++|...|++..+... -+...+..+...+.+.|++++|...+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666665544 4555566666666666666666666666555421 24455555666666666666666666554
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=8.6e-12 Score=112.78 Aligned_cols=200 Identities=13% Similarity=0.028 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56678888888888888888888888887654 4467778888888888888888888888887753 346677777888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC
Q 042609 276 WFCKG-GKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD 353 (540)
Q Consensus 276 ~~~~~-g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 353 (540)
.|... |++++|...|+++.+.+..|+. ..+..+...+... |++++|+..++++..... .+...+..+...+.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 88888 8888888888777662222322 2222222333332 444444444444433211 122333334444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
+++|...++++.+.....+...+..+...+...|+.++|..+++.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444444444433211123333333333344444444444444443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=7.6e-11 Score=110.51 Aligned_cols=224 Identities=15% Similarity=-0.000 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQ----EDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
..++..+...|...|++++|...|++..+.+ +...+..+-..+.. . +++++|+..|++..+.+ +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444455555555555555555555555421 12233333333333 3 56666666666665544 455666
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 343 SVIRSLCR----MKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGL 414 (540)
Q Consensus 343 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 414 (540)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 899999999999998864 77888999999999 999999999999999875 67778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 415 MSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486 (540)
Q Consensus 415 l~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 486 (540)
-..|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+-.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 999999999999999875 67888889999999 999999999999999874 3566666666
Q ss_pred HHHHh----CCCHHHHHHHHHHHHHCCC
Q 042609 487 SLCLK----ALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 487 ~~~~~----~g~~~~A~~l~~~m~~~g~ 510 (540)
.|. + .+++++|.+.+++..+.|.
T Consensus 227 ~~~-~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQY-NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHH-TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHH-cCCCcccCHHHHHHHHHHHHHcCC
Confidence 665 6 7899999999999998764
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=2e-11 Score=112.78 Aligned_cols=196 Identities=14% Similarity=0.006 Sum_probs=166.4
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
.+...+...|++++|...|+.+.+..+. +..+|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPS-----SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3444667789999999999999887664 78999999999999999999999999998764 45788999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 321 (540)
...|++++|.++++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. ..+...+..+...+... |++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE-REYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-CCHHH
Confidence 99999999999999998843344 56778889999999999999999999998865 23466677777777776 99999
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE 367 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (540)
|...++.+..... .+...+..+...+.+.|+.++|...++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999887543 35566888889999999999999999999875
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=4.5e-12 Score=114.63 Aligned_cols=210 Identities=12% Similarity=-0.037 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH
Q 042609 229 VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS-VVAF 307 (540)
Q Consensus 229 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ 307 (540)
+++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|...|++..+.+ |+.. .+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 4566777788888888888888888888888764 3567778888888888888888888888877755 4433 2222
Q ss_pred HHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 308 LISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG 387 (540)
Q Consensus 308 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 387 (540)
+-..+... + ... .. .+...|++++|...|++..+.. +-+...+..+..+|...|
T Consensus 79 lg~~~~~~-~------------~~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 79 LSEAYVAL-Y------------RQA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHH-H------------HTC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-h------------hhh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC
Confidence 22221111 0 000 00 1123489999999999998863 336778889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
++++|+..|++..+.. .+...+..+..+|...|++++|...|++..+.. +-+...+..+...+.+.|++++|...|+
T Consensus 133 ~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 133 ERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998887 688999999999999999999999999999874 4467889999999999999999999998
Q ss_pred HHH
Q 042609 468 EMK 470 (540)
Q Consensus 468 ~m~ 470 (540)
+..
T Consensus 210 ~~~ 212 (217)
T 2pl2_A 210 LEH 212 (217)
T ss_dssp ---
T ss_pred HHh
Confidence 765
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=3.2e-11 Score=108.99 Aligned_cols=199 Identities=9% Similarity=-0.076 Sum_probs=167.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+.+.+..+. +...|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPK-----NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 445566778889999999999999987765 78999999999999999999999999998764 457889999999
Q ss_pred HHHhC-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 241 ALSRR-KIFDWAWSVCEKMIETGSLPD-SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 241 ~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
.+... |++++|...++.+++.+..|+ ...+..+...+.+.|++++|...|+++.+.. ..+...+..+...+... |+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA-GQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc-CC
Confidence 99999 999999999999998433343 6778899999999999999999999998865 23356666677777776 99
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE 367 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 367 (540)
+++|...+++........+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999887654245666888888889999999999999998764
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=1.5e-11 Score=115.04 Aligned_cols=197 Identities=14% Similarity=0.048 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLP--DSEKVGKIISW 276 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~ 276 (540)
.+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++.+..+ ....|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34444555556666666666666655543 2233355555555666666666666666655532111 12335555556
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHH
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHG 356 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (540)
|...|++++|...|++..+.. ..+...+..+-..+... |++++|+..|++..... +.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555432 11112222222233332 44444444444333321 1112223333312222235555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHH
Q 042609 357 AKTLLSKMISEGPPPGNAVFNSVISAYSKAGD---MTPAMEMLKLMR 400 (540)
Q Consensus 357 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 400 (540)
|...|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555555544431 1223444444444444444 444554444443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=1.3e-12 Score=122.32 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=129.2
Q ss_pred hcCChHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 209 KLGKGKAAFEVFNKFGDYGC---VANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 285 (540)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 35778888888888876531 1245667777788888888888888888887763 2456777777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMI 365 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 365 (540)
|...|+++.+.. |+ +...+..+...|.+.|++++|...|+++.
T Consensus 96 A~~~~~~al~~~--~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 96 AYEAFDSVLELD--PT-----------------------------------YNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHHHHHHHC--TT-----------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cc-----------------------------------ccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 887777766543 21 22334444455555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C
Q 042609 366 SEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL---S 442 (540)
Q Consensus 366 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~ 442 (540)
+. .|+.......+..+...|++++|...+++..... .++...+ .++..+...++.++|...+.++.+..... +
T Consensus 139 ~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 139 QD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred Hh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 43 2222223333333344456666666665544431 1222222 24444555555566666665554432100 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 443 PVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
...|..+...|.+.|++++|...|+++.+.
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 355666666666666666666666666654
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.46 E-value=4.2e-10 Score=122.34 Aligned_cols=299 Identities=17% Similarity=0.094 Sum_probs=173.9
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH---------------------------h
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFS---------------------------K 209 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~---------------------------~ 209 (540)
++.-....++++...|...+|.++++++.-... ...-+....|.|+.... .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s--~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS--VFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC--cccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 344566777888888999999999998873221 01114455555554443 3
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVV 289 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 289 (540)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444455555554431 11111122211 344455555554432 2345566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042609 290 YTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP 369 (540)
Q Consensus 290 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 369 (540)
|.+. -+...|..++..+.+. |++++|.++|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1128 YiKA------dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 6442 2344455555555544 66666666666554433 22222334666666666666433321 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 370 PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 370 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 234455555666666667777776666653 35666777777777777777766654 245667666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 450 IRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
-.+|...|++..|......+ ..+...+..++..|- +.|.+++|+.+++.-...
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe-~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ-DRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcc
Confidence 66777777766666655432 235666778887765 899999999999877643
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=7.7e-12 Score=117.02 Aligned_cols=232 Identities=12% Similarity=0.005 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVA--NQETYYFT 238 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p--~~~t~~~l 238 (540)
.-.....+...|++++|...|+.+.+..+. +...|..+...|...|++++|++.|++..+.+-.+ ...+|..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 334455777889999999999999987765 66789999999999999999999999998743112 24458899
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCc
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ-SVVAFLISSLCQEDE 317 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~ 317 (540)
...+...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+.. |+. ..+..+-..++.. +
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~-~ 156 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYN-K 156 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHH-H
Confidence 999999999999999999998864 3466889999999999999999999999887753 444 4444444144555 6
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcC
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD---VHGAKTLLSKMISEG-PPPG------NAVFNSVISAYSKAG 387 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g 387 (540)
++++|...|++..+.... +...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|.+.|
T Consensus 157 ~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 999999999999876422 35667777788887787 888888888877531 1122 246677777888888
Q ss_pred ChhHHHHHHHHHHHC
Q 042609 388 DMTPAMEMLKLMRSR 402 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~ 402 (540)
++++|.+.|++..+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 888888888887765
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=9.8e-12 Score=114.01 Aligned_cols=201 Identities=14% Similarity=0.069 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 55677777888888888888888888887653 4567777778888888888888888888877653 346677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.|...|++++|.+.|+++.+.. ..+...+. .+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~------------------------------------~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFY------------------------------------MLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHH------------------------------------HHHHHHHHTSCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHH------------------------------------HHHHHHHHhccHH
Confidence 8888888888888877776543 11222333 3333344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 356 GAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 356 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
+|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+... .+..++..+...|...|++++|...++++.
T Consensus 143 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444443321 12344444445555555555555555555444321 134445555555555555555555555554
Q ss_pred HC
Q 042609 436 KN 437 (540)
Q Consensus 436 ~~ 437 (540)
+.
T Consensus 221 ~~ 222 (243)
T 2q7f_A 221 DI 222 (243)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=4e-11 Score=117.70 Aligned_cols=154 Identities=6% Similarity=-0.087 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK-GKAAFEVFNKFGDYGCVANQETYYFTI 239 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~g~~p~~~t~~~ll 239 (540)
|..+...+...|++++|...|+.+.+..+. +..+|+.+...+...|+ +++|+..|++..+.. +-+...|+.+.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc-----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 334445666778899999999999988876 88999999999999996 999999999998865 45788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
.++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|...|+++.+.+ .-+...|+.+-..+....|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998874 3577888888889999999999999999888765 223455555544444422433
Q ss_pred HHH
Q 042609 320 KLA 322 (540)
Q Consensus 320 ~~a 322 (540)
++|
T Consensus 252 ~eA 254 (382)
T 2h6f_A 252 DRA 254 (382)
T ss_dssp SHH
T ss_pred hHH
Confidence 333
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=4.8e-11 Score=117.14 Aligned_cols=231 Identities=13% Similarity=0.046 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI-FDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
+...|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45678888889999999999999999998865 5578889999999999997 999999999999874 35778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCH
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDV 354 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (540)
.++.+.|++++|...|+++.+.+ .-+...|. .+..++.+.|++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~------------------------------------~lg~~~~~~g~~ 216 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQ------------------------------------HRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHH------------------------------------HHHHHHHHHTCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHH------------------------------------HHHHHHHHcCCh
Confidence 99999999999999999887755 11223333 333334444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISAYSK-AGDMTPA-----MEMLKLMRSRGLKPDVYTYTGLMSGYANGG--QMEE 426 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~ 426 (540)
++|+..|+++++..+ -+...|+.+..+|.+ .|..++| +..|++..+.... +...|..+...+...| +.++
T Consensus 217 ~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 217 DNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp TTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHH
Confidence 555555555544321 234445555555554 3333444 2444444443211 3444555555555544 3455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---------EFDCALKLLNEM 469 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 469 (540)
|.+.+.++ +. ...+...+..+...|.+.| ..++|.++|+++
T Consensus 295 a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 295 LLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55555554 22 1233445555555555542 135555555555
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=1.2e-11 Score=113.53 Aligned_cols=195 Identities=13% Similarity=0.074 Sum_probs=133.0
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
.+...+...|++++|...|+.+.+..+. +...|..+...|...|++++|++.|+++.+.. +.+..++..+...+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEENKE-----DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp --------------CCTTHHHHHTTCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3444566779999999999999886654 78999999999999999999999999998764 45788999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLA 322 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a 322 (540)
...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...++++.+.. ..+...+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~----------------- 162 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEAR----------------- 162 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHH-----------------
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHH-----------------
Confidence 99999999999999998864 3577888999999999999999999999887654 1123333
Q ss_pred HHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 323 LDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 323 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.
T Consensus 163 -------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 -------------------FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp -------------------HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 334444444455555555555544432 223445555555555555555555555555443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=4.6e-12 Score=126.40 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CC-CCCHHHHHH
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQ----ETYYFTIEALSRRKIFDWAWSVCEKMIET----GS-LPDSEKVGK 272 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 272 (540)
.+...+...|++++|+..|++..+.+ +.+. ..|..+...+...|++++|...+++.++. +. .....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34444455555555555555554432 1121 23444444555555555555555544332 10 112234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~ 294 (540)
+...|...|++++|...|++..
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555543
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=7.6e-12 Score=124.79 Aligned_cols=273 Identities=13% Similarity=0.092 Sum_probs=191.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTV----EILNELIALFSKLGKGKAAFEVFNKFGDY----G-CVANQET 234 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g-~~p~~~t 234 (540)
+...+...|++++|...|+.+.+..+. +. .+|..+...|...|++++|+..|++..+. + .+....+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344667789999999999999987654 44 57899999999999999999999988653 1 1234567
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIETG-----SLPDSEKVGKIISWFCKGGK-----------------AKEAHVVYTL 292 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 292 (540)
+..+...+...|++++|...+++.++.. ......++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999999886641 11224467778888888888 6666666555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-C
Q 042609 293 AREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-P 371 (540)
Q Consensus 293 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p 371 (540)
..+ +...... .......+..+...|...|++++|...+++..+.... .
T Consensus 209 al~-----------------------------~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 209 NLK-----------------------------LMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHH-----------------------------HHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-----------------------------HHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 332 1111100 0001234566667777777777777777776543110 1
Q ss_pred C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 042609 372 G----NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL----K-PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS--- 439 (540)
Q Consensus 372 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--- 439 (540)
+ ..++..+...|...|++++|...|++..+... . ....++..+...|...|++++|...+++..+...
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 23677778888888888888888877654311 0 1246777888888889999999888888765310
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 440 --RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 440 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.....++..+...|.+.|++++|...|++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111357788888999999999999999988754
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=2.5e-11 Score=120.47 Aligned_cols=273 Identities=13% Similarity=0.045 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-C
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIET----GSLP-D 266 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~ 266 (540)
....+......+...|++++|+..|++..+.+ +.+ ..+|..+...+...|++++|...+++.+.. +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45566667777777777778877777776653 223 345666777777777777777777765433 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCch--------------------HHH
Q 042609 267 SEKVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPP----QSVVAFLISSLCQEDET--------------------VKL 321 (540)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~--------------------~~~ 321 (540)
..++..+...|...|++++|...+++..+... .++ ...+..+-..+... |+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHH
Confidence 44566777777788888888877776654210 011 11333344444444 67 777
Q ss_pred HHHHHHHhHhccC-----CCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhH
Q 042609 322 ALDMLDDFSGEAR-----KYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PPG----NAVFNSVISAYSKAGDMTP 391 (540)
Q Consensus 322 a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 391 (540)
|...+++...... .....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 7777766543210 01123467777888888888888888888764311 112 2367778888888899998
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 042609 392 AMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNHS-RLS----PVTYHTLIRGYCKLEEFDC 461 (540)
Q Consensus 392 A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~ 461 (540)
|...+++..+. +..+ ...++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888876543 1111 145677788888888898888888888765311 112 4577788888888889888
Q ss_pred HHHHHHHHH
Q 042609 462 ALKLLNEMK 470 (540)
Q Consensus 462 A~~~~~~m~ 470 (540)
|...+++..
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=2.3e-10 Score=109.38 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=137.3
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 175 KEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK-------LGKG-------KAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 175 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
++|..+|++..+..+. ++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++.
T Consensus 33 ~~a~~~~~~al~~~p~-----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4688889988887765 88999999888764 5776 889999988887312345668888888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCch
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPD-SE-KVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDET 318 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 318 (540)
.+.+.|++++|..+|++.++. .|+ .. +|..++..+.+.|++++|..+|++..+.+. .+...|........
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~----- 179 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEY----- 179 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHH-----
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH-----
Confidence 888888999999999888875 343 33 788888888888888888888888776441 12222221111101
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
...|+.++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++
T Consensus 180 ------------------------------~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 180 ------------------------------YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp ------------------------------HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ------------------------------HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12355555555555554431 22444555555555555555555555555
Q ss_pred HHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 399 MRSRG-LKP--DVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 399 m~~~g-~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
..... +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55542 232 2445555555555555555555555555543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=5.3e-12 Score=121.54 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC-CCHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIET----GSL-PDSE 268 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~ 268 (540)
..+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++.++. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 334444555566666666666666665542 122 244555566666666666666666554432 111 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 269 KVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
++..+...|...|++++|...+++..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556666666666666666666554
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.4e-11 Score=122.27 Aligned_cols=290 Identities=13% Similarity=0.040 Sum_probs=213.0
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT----VEILNELIALFSKLGKGKAAFEVFNKFGDY----GCVA-NQET 234 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~p-~~~t 234 (540)
....+...|++++|...|+.+.+..+. + ..+|..+...|...|++++|+..|++.... +-.| ...+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 344667789999999999999887553 4 467899999999999999999999987542 2122 2557
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVGKIISWFCKGGK--------------------AKEAHVV 289 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 289 (540)
+..+...+...|++++|...+++.++... .++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 88888999999999999999998876411 012 4478888999999999 9999999
Q ss_pred HHHHHHc----CCCCCH-HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC-CC----cccHHHHHHHHHcCCCHHHHHH
Q 042609 290 YTLAREK----KMYPPQ-SVVAFLISSLCQEDETVKLALDMLDDFSGEARK-YA----IKPFSSVIRSLCRMKDVHGAKT 359 (540)
Q Consensus 290 ~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 359 (540)
+++.... +..+.. ..+..+-..+... |++++|...+++....... ++ ..++..+...|...|++++|..
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 8876542 111211 2344455555555 9999999999987654221 11 2268888999999999999999
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 042609 360 LLSKMISEGPP-PG----NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYTGLMSGYANGGQMEEACE 429 (540)
Q Consensus 360 ~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~ 429 (540)
.+++....... .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988743111 11 55788889999999999999999988765311 112 5678888899999999999999
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCH
Q 042609 430 ILNEAKKN----HSR-LSPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 430 ~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~ 459 (540)
.+++..+. +.. ....++..+...|...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99987653 211 1235666677777776665
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=1.1e-09 Score=104.55 Aligned_cols=236 Identities=9% Similarity=0.018 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhc----CCh----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-------hCCCh-------hHHHHH
Q 042609 197 VEILNELIALFSKL----GKG----KAAFEVFNKFGDYGCVANQETYYFTIEALS-------RRKIF-------DWAWSV 254 (540)
Q Consensus 197 ~~~~~~li~~~~~~----g~~----~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~ 254 (540)
...|...+..--+. ++. ++|+.+|++..... +-+...|......+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555544332 222 67778888877643 456667777666664 34664 667777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccC
Q 042609 255 CEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEAR 334 (540)
Q Consensus 255 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~ 334 (540)
|++.++.-.+-+...|..++..+.+.|++++|..+|+++.+.. |+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~--------------------------------- 131 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DI--------------------------------- 131 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SS---------------------------------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--cc---------------------------------
Confidence 7776662112344566666666666666666666666655422 21
Q ss_pred CCCcc-cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 335 KYAIK-PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAY-SKAGDMTPAMEMLKLMRSRGLKPDVYTYT 412 (540)
Q Consensus 335 ~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 412 (540)
+.. .|..+...+.+.|++++|..+|++..+... .+...|....... ...|++++|..+|+...+... -+...|.
T Consensus 132 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 207 (308)
T 2ond_A 132 --DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVL 207 (308)
T ss_dssp --CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred --CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 111 455666666667777777777777776532 3444454433332 236999999999999887632 2678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 413 GLMSGYANGGQMEEACEILNEAKKNH-SRL--SPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 413 ~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999963 354 4678999999999999999999999999864
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.1e-10 Score=115.46 Aligned_cols=305 Identities=10% Similarity=0.004 Sum_probs=171.4
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH--HHhcCChHHHH-----------HHHHHHhhCCCCCCHH
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIAL--FSKLGKGKAAF-----------EVFNKFGDYGCVANQE 233 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~-----------~~f~~m~~~g~~p~~~ 233 (540)
...+.+++++|..+.+.+.+........++...|-.++.. ....+.++.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 4567789999999999887754331111344444554433 12233344444 6666654421 1111
Q ss_pred H------HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 234 T------YYFTIEALSRRKIFDWAWSVCEKMIETGS-LP----DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 234 t------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
. +......+...|++++|...+++..+.-- .+ ...++..+...|...|++++|...+++..+..
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 173 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY----- 173 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----
Confidence 1 22245566788899999988888876410 12 24567788888888888888888887765421
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-PG----NAVFN 377 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~ 377 (540)
...++.. .....+++.+...|...|++++|...|++..+.... ++ ..++.
T Consensus 174 -----------~~~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 174 -----------KEHEAYN--------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp -----------HTCSTTH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------HhCccch--------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0001000 000123555556666666666666666665432100 11 23566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHH
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSR----GL-KPDVYTYTGLMSGYANGGQMEEACEILNEAKKN----HSRLSPVTYHT 448 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~ 448 (540)
.+...|...|++++|...|++..+. +. .....++..+...|.+.|++++|...+++..+. +-+.....+..
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666777777777777777666551 22 223456666777777777777777777766543 11111223455
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 449 LIRGYCKLEE---FDCALKLLNEMKDVGVQPNVDE-YNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 449 li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
+...|...|+ +++|+.++++. +..|+... +..+-..| .+.|++++|.+.+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y-~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYY-HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHH
Confidence 6666777777 56666666554 22333333 33333333 467777777777777653
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2.9e-11 Score=116.36 Aligned_cols=272 Identities=14% Similarity=0.117 Sum_probs=189.7
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLT----VEILNELIALFSKLGKGKAAFEVFNKFGDY----GCV-ANQETY 235 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~-p~~~t~ 235 (540)
...+...|++++|...|+.+.+..+. + ..+|..+...|...|++++|++.|++..+. +-. ....++
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34567789999999999999887553 4 468889999999999999999999987542 212 235678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVGKIISWFCKGGK--------------------AKEAHVVY 290 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 290 (540)
..+...+...|++++|...+++.++... .++ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999999999999998765411 122 3467778888888888 66666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--
Q 042609 291 TLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-- 368 (540)
Q Consensus 291 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 368 (540)
++.... .+.... .......+..+...+...|++++|...+++..+..
T Consensus 167 ~~a~~~-----------------------------~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 167 EENLSL-----------------------------VTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHH-----------------------------HHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------------HHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 554321 111000 00012245566667777777777777777765321
Q ss_pred --C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 042609 369 --P-PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYTGLMSGYANGGQMEEACEILNEAKKNH-- 438 (540)
Q Consensus 369 --~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-- 438 (540)
. .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 0 11123677788888888898888888887654310 011 5567778888889999999999888876531
Q ss_pred --C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 439 --S-RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 439 --~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
- .....++..+...|.+.|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 111357788888999999999999999988754
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=1.5e-11 Score=117.24 Aligned_cols=240 Identities=14% Similarity=0.116 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDY-------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET------G 262 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g 262 (540)
+..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+++.++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888887662 22344566777788888888888888888877654 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCC
Q 042609 263 S-LPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK------KMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARK 335 (540)
Q Consensus 263 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~ 335 (540)
- .....++..+...|...|++++|...|+++.+. +..|..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~--------------------------------- 152 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV--------------------------------- 152 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH---------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH---------------------------------
Confidence 1 223456777778888888888888888776542 111111
Q ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----
Q 042609 336 YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE------GPPP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG----- 403 (540)
Q Consensus 336 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----- 403 (540)
...+..+...+...|++++|..+++++.+. +..| ...++..+...|...|++++|...++++.+..
T Consensus 153 --~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 153 --AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp --HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 122333444444444444444444444332 1111 22344555555555555555555555544310
Q ss_pred --C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 404 --L---KP----DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 404 --~---~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
. .+ ....+..+...+...+.+.++...++...... +.+..+|..+...|.+.|++++|.++|++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 00 11223333334444555555666666655432 22345667777777777777777777776653
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.30 E-value=2.2e-10 Score=115.71 Aligned_cols=314 Identities=15% Similarity=0.038 Sum_probs=154.6
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKG---KAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
.....+.|++++|...|+...+.+ +...+..|...|...|+. ++|++.|++..+. +...+..+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g-------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG-------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-------CCTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 334556788888888888776643 344566666666677777 7888888877653 44555555554
Q ss_pred HHhCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCC---------------
Q 042609 242 LSRRK-----IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE---AHVVYTLAREKKM--------------- 298 (540)
Q Consensus 242 ~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~--------------- 298 (540)
+...+ ++++|...|++..+.|. ++ .+..|...|...+..++ +.+.+......|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 44444 66778888888777653 22 34444444444333221 2222222222221
Q ss_pred -----------------CCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcC----CCH
Q 042609 299 -----------------YPPQSVVAFLISSLCQEDE---TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRM----KDV 354 (540)
Q Consensus 299 -----------------~p~~~~~~~ll~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~ 354 (540)
..+...+..+-..+... | +.++|+..|+...+.|.. +...+..+...|... ++.
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKK-QQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 11111333333333333 5 666666666666655422 222224455555433 566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNAVFNSVISA-Y--SKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG-----QMEE 426 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~ 426 (540)
++|...|++.. . -+...+..|-.. | ...+++++|...|++..+.| +...+..|-..|. .| +.++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 66777766665 2 233444444444 2 34666777777777666654 4555555555555 33 6777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHH
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTA 498 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A 498 (540)
|...|++.. .| +...+..|...|.. ..+.++|...|++..+.|. ++ ....|-..|. . ..+.++|
T Consensus 306 A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~-~G~g~~~d~~~A 377 (452)
T 3e4b_A 306 AEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFS-QGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHH-SCTTBCCCHHHH
T ss_pred HHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHH-hCCCCCCCHHHH
Confidence 777776666 33 55556666655554 2366777777777666553 22 2333333332 2 2366777
Q ss_pred HHHHHHHHHCCC
Q 042609 499 EKLLEDMRLKGL 510 (540)
Q Consensus 499 ~~l~~~m~~~g~ 510 (540)
..+|+...+.|.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 777777766664
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=4.7e-10 Score=110.78 Aligned_cols=185 Identities=15% Similarity=0.009 Sum_probs=126.9
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-C
Q 042609 339 KPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PP-----GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----GLKP-D 407 (540)
Q Consensus 339 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 407 (540)
.++..+...|...|++++|...+++..+.-. .+ ...+++.+...|...|++++|...|++..+. +-.+ .
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3466777777888888888888877764311 11 2457888899999999999999999887643 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC-H
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKN----HS-RLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG---VQPN-V 478 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~ 478 (540)
..++..+...|...|++++|...+++..+. +. +....++..+...|.+.|++++|...+++..+.. -.|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 247888999999999999999999998872 22 3346789999999999999999999999876321 0122 2
Q ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCcHHH-H-HHHHHHHHHH
Q 042609 479 DEYNKLIQSLCLKALD---WRTAEKLLEDMRLKGLHLNGIT-R-ALIRAVKELE 527 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t-~-~ll~a~~~l~ 527 (540)
..+..+- .+....|+ +++|+.++++. +..++... + .+...+...+
T Consensus 304 ~~~~~l~-~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 304 SEFEFLK-SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHHHHH-HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCC
Confidence 2334444 44447888 77777777665 44444322 2 4444444433
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=116.59 Aligned_cols=248 Identities=12% Similarity=0.044 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIET-------GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
.+..++..+...+...|++++|..+++++++. .......++..+...|...|++++|...|++.....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----
Confidence 35667888889999999999999999998873 223345667888888999999999988888765421
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC------CC-CCCHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE------GP-PPGNAV 375 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~ 375 (540)
+.............+..+...|...|++++|...++++.+. +. +.....
T Consensus 100 ------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 100 ------------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp ------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 00000000111234666677777778888887777777643 22 224557
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSR------GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNH-------SRL 441 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g-------~~p 441 (540)
+..+...|...|++++|..+|+++.+. +..| ...++..+...|...|++++|...++++.+.. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 888899999999999999999998764 2223 34678889999999999999999999988631 111
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 442 -------SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 442 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
....+..+...+...+.+.++...+....... ..+..++..+...|. +.|++++|.+++++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYR-RQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence 12345555666777888888888888887542 224456667776665 889999999999988753
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=1.6e-10 Score=117.56 Aligned_cols=209 Identities=9% Similarity=-0.093 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKG-KAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAW 252 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (540)
.+++...++......+. +...|..+...|...|++ ++|++.|++..+.. +-+...|..+..+|.+.|++++|.
T Consensus 84 ~~~al~~l~~~~~~~~~-----~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV-----EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccCch-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45666667665554433 788899999999999999 99999999987764 446888888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC------
Q 042609 253 SVCEKMIETGSLPDSEKVGKIISWFCKG---------GKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQED------ 316 (540)
Q Consensus 253 ~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~------ 316 (540)
+.|++.++. .|+...+..+...|... |++++|...|++..+.. |+ ...|..+-..+.. .
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~-~~~~~~~ 232 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLS-LYFNTGQ 232 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-HHHhhcc
Confidence 999998876 46678888888888888 77788887777777654 33 3333332222221 2
Q ss_pred --chHHHHHHHHHHhHhccCC--CCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 042609 317 --ETVKLALDMLDDFSGEARK--YAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPA 392 (540)
Q Consensus 317 --~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 392 (540)
|++++|+..|++....... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554443210 133344444444445555555555554444431 11333444444444444444444
Q ss_pred HH
Q 042609 393 ME 394 (540)
Q Consensus 393 ~~ 394 (540)
.+
T Consensus 312 i~ 313 (474)
T 4abn_A 312 LE 313 (474)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=2.1e-09 Score=93.93 Aligned_cols=166 Identities=12% Similarity=-0.079 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+..+|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44555555555555555555555555555443 3345555555555555555555555555555442 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH 355 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (540)
.+...++++.|...+.+..... ..+...+..+-..+... |++++|++.|++..+... .+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 5555556666655555555433 11223333333333333 566666666665554432 23455666677777777777
Q ss_pred HHHHHHHHHHH
Q 042609 356 GAKTLLSKMIS 366 (540)
Q Consensus 356 ~a~~~~~~m~~ 366 (540)
+|...|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777665
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.24 E-value=1.7e-09 Score=94.55 Aligned_cols=167 Identities=16% Similarity=0.081 Sum_probs=130.0
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
+...|..+...|.+.|++++|...|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34567788888888888888888888888763 336778888888888888888888888888766433 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHH
Q 042609 417 GYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWR 496 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 496 (540)
.+...++++.|...+.+..+.. +-+...+..+...|.+.|++++|++.|++..+.. +-+...|..+-..|. +.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~-~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYE-GKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHH-HCCCHH
Confidence 8888888888888888887764 3467788888888888899999999988888653 235566766666665 788889
Q ss_pred HHHHHHHHHHHC
Q 042609 497 TAEKLLEDMRLK 508 (540)
Q Consensus 497 ~A~~l~~~m~~~ 508 (540)
+|++.|++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999988888764
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=7.5e-10 Score=109.12 Aligned_cols=307 Identities=10% Similarity=0.035 Sum_probs=168.0
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH--HhcCChHHHH---------HHHHHHhhCCCCCCH-H-
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALF--SKLGKGKAAF---------EVFNKFGDYGCVANQ-E- 233 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~---------~~f~~m~~~g~~p~~-~- 233 (540)
.....+++++|..+++.+.+....-....++..|-.|+..- ...+..+.+. +.++.+.....+.+. .
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~ 100 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLK 100 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHH
Confidence 45667899999999998876543321223445555555431 1122222222 555555432111111 1
Q ss_pred --HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042609 234 --TYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVA 306 (540)
Q Consensus 234 --t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 306 (540)
.+......+...|++++|...+++..+... .++ ..++..+...|...|+++.|...+++..+...
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-------- 172 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ-------- 172 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--------
Confidence 122334456678889999888888876421 122 45677778888888888888888777654210
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----GPPP-GNAVFNSVIS 381 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~ 381 (540)
.. +.... ....+++.+...|...|++++|...|++..+. +..+ ...++..+..
T Consensus 173 -------~~-~~~~~--------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 173 -------NH-PLYSI--------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp -------TS-TTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------hC-CCchh--------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 00000 01223445555566666666666666555432 1111 1235666666
Q ss_pred HHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHH
Q 042609 382 AYSKAGDMTPAMEMLKLMRS-----RGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNH----SRLSPVTYHTLIRG 452 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~ 452 (540)
.|...|++++|...|++..+ .... ...++..+...|.+.|+.++|...+++..+.. -+.....+..+...
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776655 3222 25566667777777777777777777766531 11122345555556
Q ss_pred HHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 453 YCKLEE---FDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 453 ~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
|...|+ +++|+..+++ .+..|+...+...+..+..+.|++++|.+.|++..+
T Consensus 310 y~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666 5666666555 222333333333333333467777777777776654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=1.1e-09 Score=111.27 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 213 GKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF-DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYT 291 (540)
Q Consensus 213 ~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (540)
++++++.+++..... +.+...+..+...+...|++ ++|.+.|++.++.. +.+...|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655432 34677777777777788888 88888888777653 2346777777777888888888888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 042609 292 LAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP 371 (540)
Q Consensus 292 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 371 (540)
+..+.. |+...+.. +...+...+. + ....+.|++++|...|++..+.. +.
T Consensus 162 ~al~~~--p~~~~~~~-lg~~~~~~~~--------------~------------~~~~~~g~~~~A~~~~~~al~~~-p~ 211 (474)
T 4abn_A 162 GALTHC--KNKVSLQN-LSMVLRQLQT--------------D------------SGDEHSRHVMDSVRQAKLAVQMD-VL 211 (474)
T ss_dssp HHHTTC--CCHHHHHH-HHHHHTTCCC--------------S------------CHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHhhC--CCHHHHHH-HHHHHHHhcc--------------C------------ChhhhhhhHHHHHHHHHHHHHhC-CC
Confidence 777644 55333222 2222233300 0 00001145555555555555432 22
Q ss_pred CHHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 372 GNAVFNSVISAYSKA--------GDMTPAMEMLKLMRSRGLK--PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 372 ~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
+...|..+..+|... |++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +-
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~ 290 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PA 290 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 455555566666555 6666666666666554210 255666666666666666666666666666543 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 442 SPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
+...+..+...+...|++++|.+.+.++
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455666666666666666666655444
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=5.8e-09 Score=102.72 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=131.8
Q ss_pred chHHHHHHHHHHhHhccCC-C----CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--C---CC-CHHHHHHHHHHHHh
Q 042609 317 ETVKLALDMLDDFSGEARK-Y----AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG--P---PP-GNAVFNSVISAYSK 385 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~---~p-~~~~~~~li~~~~~ 385 (540)
|++++|+..|++....... + ...++..+...|...|+++.|...+++..+.. . .+ ...+++.+...|..
T Consensus 115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~ 194 (378)
T 3q15_A 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194 (378)
T ss_dssp TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 5555555555554432111 1 13347778888888999999988888876421 1 11 24578889999999
Q ss_pred cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHh
Q 042609 386 AGDMTPAMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKK-----NHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li~~~~~ 455 (540)
.|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...+++..+ .. +....++..+...|.+
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCK 273 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHH
Confidence 99999999999887653 2111 245788899999999999999999999887 43 2336788999999999
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHhCCC---HHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMKDVGV---QPNVDEYNKLIQSLCLKALD---WRTAEKLLED 504 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~g~---~~~A~~l~~~ 504 (540)
.|++++|...+++..+..- .|........+..+....|+ +.+|+.++++
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999874211 23333333444444547777 7777777766
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=8.2e-09 Score=101.31 Aligned_cols=300 Identities=11% Similarity=-0.016 Sum_probs=173.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHH
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQE----TYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPD----SEKVG 271 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~ 271 (540)
......+...|++++|+..+++.....-..+.. +++.+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556777777777777765543112221 344555566667777777777776654210 011 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CCHH-HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCC----Cccc
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREK----KMY--PPQS-VVAFLISSLCQEDETVKLALDMLDDFSGEARKY----AIKP 340 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~ 340 (540)
.+...+...|++++|...+++..+. +.. |... .+..+-..+... |++++|...+++........ ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5666677777777777777766532 111 2222 222233334444 77777777777665432211 1234
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFN----SVISAYSKAGDMTPAMEMLKLMRSRGLKP---DVYTY 411 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~ 411 (540)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66677777888888888888888764311111 11111 23344678888888888888776543211 13356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 412 TGLMSGYANGGQMEEACEILNEAKKN----HSRLSP-VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQ 486 (540)
Q Consensus 412 ~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 486 (540)
..+...+...|+.++|...+++.... |..++. ..+..+...+...|+.++|...+++..... +. .-.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 67777888889999988888877543 222222 356667778888899999998888876421 00 11122
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 487 SLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 487 ~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
.+. ..| +....+++.+.....
T Consensus 331 ~~~-~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFV-IEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHH-TTH--HHHHHHHHHHHHTTC
T ss_pred HHH-Hcc--HHHHHHHHHHHhCCC
Confidence 233 344 566667777766543
No 75
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.18 E-value=3e-09 Score=107.38 Aligned_cols=306 Identities=11% Similarity=0.047 Sum_probs=199.3
Q ss_pred ChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChh
Q 042609 173 GKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKA---AFEVFNKFGDYGCVANQETYYFTIEALSRRKIFD 249 (540)
Q Consensus 173 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (540)
+.++|...|++..+.+ +...+..|...|...+..++ +.+.+......| +...+..+...|...+.++
T Consensus 89 ~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG-------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHHHHHHHHHHHHHTT-------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 5566777777666533 22366666666666554433 344444444433 2345555666666666544
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----chHHHH
Q 042609 250 WAWSVCEKMIETGSLPDSEKVGKIISWFCKGG---KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQED----ETVKLA 322 (540)
Q Consensus 250 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~~a 322 (540)
.+......+.+.-...+...+..|..+|.+.| +.++|.+.|+...+.|. ++...+. .+..++... ++.++|
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~-~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVD-SVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHH-HHHHHHTCGGGSSCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHH-HHHHHHhCCCCCCCCHHHH
Confidence 44443333322211223337888999999999 99999999999998882 3333222 233334442 589999
Q ss_pred HHHHHHhHhccCCCCcccHHHHHHH-H--HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHH
Q 042609 323 LDMLDDFSGEARKYAIKPFSSVIRS-L--CRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG-----DMTPAME 394 (540)
Q Consensus 323 ~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~ 394 (540)
+..|+... .| +...+..+... + ...++.++|...|++..+.| +...+..|-..|. .| ++++|..
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999987 43 45566677666 4 46899999999999999876 6677777877777 55 9999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 042609 395 MLKLMRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCALKLL 466 (540)
Q Consensus 395 ~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 466 (540)
.|++.. . -+...+..|-..|.. ..+.++|...|++..+.| +......|...|.. ..+.++|...|
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999888 4 366777777777776 449999999999999987 34455666677764 45889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 467 NEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 467 ~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
+...+.|.. +.......+.... ..++.++|.++.++-.+
T Consensus 382 ~~A~~~g~~-~a~~~l~~l~~~~-~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQDTP-EANDLATQLEAPL-TPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCCH-HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH-HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 988887642 2222222221111 22355666666665544
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.8e-08 Score=98.81 Aligned_cols=270 Identities=11% Similarity=-0.024 Sum_probs=185.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHH
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSE----KVGKIISWFCKGGKAKEAHVVYTLAREKKM-YPPQS----VVA 306 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~ 306 (540)
......+...|++++|...+++.+......+.. +++.+...+...|++++|...+++...... ..+.. .+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334456678899999999999988764323332 566777889999999999999998764211 11221 122
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhHhccC----C--C-CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----CCHHH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFSGEAR----K--Y-AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP----PGNAV 375 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~----~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~ 375 (540)
.+-..+... |++++|...+++...... . | ....+..+...+...|++++|...+++....... ....+
T Consensus 98 ~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 333444454 999999999998765321 1 1 1234566778889999999999999998754221 12356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD--VYTYT----GLMSGYANGGQMEEACEILNEAKKNHSRL---SPVTY 446 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~----~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~ 446 (540)
+..+...+...|++++|...+++.......++ ..... ..+..+...|+.++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888899999999999999998765311111 11111 23344779999999999999887653221 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMKD----VGVQPNVD-EYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
..+...+...|++++|...+++... .|..++.. .+..+-..+. ..|+.++|.+.+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW-QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 7888999999999999999998763 23222222 3444444444 78899999999998764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=4.5e-09 Score=91.33 Aligned_cols=163 Identities=15% Similarity=0.042 Sum_probs=120.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 5556667777788888888887776542 3356677777788888888888888888877653 2356777777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~ 500 (540)
.|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+. ..|++++|.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~-~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE-QMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH-HcCCHHHHHH
Confidence 888888888888877763 3466777888888888888888888888877553 235566666666665 7788888888
Q ss_pred HHHHHHHC
Q 042609 501 LLEDMRLK 508 (540)
Q Consensus 501 l~~~m~~~ 508 (540)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88887654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=7.7e-09 Score=89.81 Aligned_cols=164 Identities=13% Similarity=-0.036 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666655432 3345556666666666666666666666655542 23455555666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
...|++++|.+.|+++.+.. ..+...+..+...+... |++++|...+++..... ..+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666655543 22334444444444444 66666666666655543 22345566666667777777777
Q ss_pred HHHHHHHHH
Q 042609 358 KTLLSKMIS 366 (540)
Q Consensus 358 ~~~~~~m~~ 366 (540)
...+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=6.2e-07 Score=93.96 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=121.7
Q ss_pred cccHHHHHHHHHcCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCC
Q 042609 338 IKPFSSVIRSLCRMKDVHGAK-TLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG---------LKPD 407 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~ 407 (540)
...|...+..+.+.|+.++|. .+|++.... ++.+...|-..+...-+.|++++|.++|+.+.+.. -.|+
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 344555555566677888886 888888764 44566667778888888899999999998887531 0132
Q ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 042609 408 ------------VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL-EEFDCALKLLNEMKDVGV 474 (540)
Q Consensus 408 ------------~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 474 (540)
...|...+....+.|.++.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 2357777777778888999999999988761122334444333333344 4588999999988865 2
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 475 QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 475 ~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.-+...|...+.-.. ..|+.+.|..+|++.......++ ..-.+...+.+++
T Consensus 501 p~~~~~w~~y~~fe~-~~~~~~~AR~lferal~~~~~~~-~~~~lw~~~~~fE 551 (679)
T 4e6h_A 501 ATDGEYINKYLDFLI-YVNEESQVKSLFESSIDKISDSH-LLKMIFQKVIFFE 551 (679)
T ss_dssp TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHTTTSSSTT-HHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHH
Confidence 334555556666443 66788999999998887654321 1223444444444
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=2.7e-09 Score=99.78 Aligned_cols=159 Identities=18% Similarity=0.104 Sum_probs=105.2
Q ss_pred hcChhhHHHHHHHHHHhcccC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHH
Q 042609 171 SVGKKEVYALWDIVKEIGEKE---KGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY------GC-VANQETYYFTIE 240 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------g~-~p~~~t~~~ll~ 240 (540)
.|+.++|...|++..+...+. .......+|..+...|...|++++|+..|++..+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 355556666666555433211 00124678999999999999999999999998653 21 234567888999
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETG-------SLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREK------KMYPP-QSVVA 306 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~ 306 (540)
.+...|++++|...+++.++.. .+....++..+...|...|++++|...|+++.+. +..|. ...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999887651 1223567788888999999999999998887653 11121 12223
Q ss_pred HHHHHHHhCCchHHHHHHHHHHhH
Q 042609 307 FLISSLCQEDETVKLALDMLDDFS 330 (540)
Q Consensus 307 ~ll~~~~~~~~~~~~a~~~~~~m~ 330 (540)
.+-..+... |++++|...+++..
T Consensus 174 ~la~~~~~~-g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQ-GKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHH
Confidence 333333333 55555555555544
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=1.9e-09 Score=100.75 Aligned_cols=228 Identities=12% Similarity=0.008 Sum_probs=140.0
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhcc------C-CCCcccHH
Q 042609 277 FCKGGKAKEAHVVYTLAREK-----K-MYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEA------R-KYAIKPFS 342 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~------~-~~~~~~~~ 342 (540)
....|++++|...|++..+. + ..|. ...+..+-..+... |++++|+..+++..... . .....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34567777777777766542 1 1122 33344455555555 88999998888876541 1 22344578
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISE------GP-PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR------GLKP-DV 408 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~ 408 (540)
.+...|...|++++|...+++.... .. +....++..+...|...|++++|...|++..+. +-.| ..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 8888888889999998888887754 11 223557778888888889999998888887654 1122 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHHHH------HHHHHHHHHCCC
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKN-------HSRL-SPVTYHTLIRGYCKLEEFDCA------LKLLNEMKDVGV 474 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~~~A------~~~~~~m~~~g~ 474 (540)
.++..+...|...|++++|..+++++.+. ...+ ....|..+...+...+....+ ...++.... .
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 247 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--D 247 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--C
Confidence 67778888888889999998888887763 1112 223333333333333332222 222221111 1
Q ss_pred CCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 475 QPN-VDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 475 ~p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.|+ ...+..+...|. +.|++++|.+++++..+.
T Consensus 248 ~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYR-RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 122 345556666655 889999999999988753
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=1.1e-08 Score=108.36 Aligned_cols=163 Identities=13% Similarity=0.067 Sum_probs=140.2
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
..|+.+...+.+.|++++|...|++..+..+. +..+|+.+...|.+.|++++|++.|++..+.. +-+..+|..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 35677788889999999999999999998876 88999999999999999999999999998865 4568899999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCc
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDE 317 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 317 (540)
..++.+.|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|+..|++..+.+ |+ ...+..+...+... |
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~-g 159 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIV-C 159 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhc-c
Confidence 999999999999999999998864 3467899999999999999999999999999865 54 45566666666665 8
Q ss_pred hHHHHHHHHHHhHh
Q 042609 318 TVKLALDMLDDFSG 331 (540)
Q Consensus 318 ~~~~a~~~~~~m~~ 331 (540)
++++|.+.+++..+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888877654
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.02 E-value=1.3e-08 Score=107.80 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=116.9
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
..+|+.+...|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3457777777778888888888888777653 225667777777888888888888888777765322 46677777788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRT 497 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~ 497 (540)
|.+.|++++|.+.|++.++.. +-+...|+.+...|.+.|++++|++.|++.++... -+...|..+...|. ..|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~-~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQ-IVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH-HTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHH-hcccHHH
Confidence 888888888888888777753 23567777888888888888888888888776421 14556666666654 6777777
Q ss_pred HHHHHHHHHH
Q 042609 498 AEKLLEDMRL 507 (540)
Q Consensus 498 A~~l~~~m~~ 507 (540)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=9.8e-08 Score=89.08 Aligned_cols=243 Identities=11% Similarity=0.048 Sum_probs=108.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK 284 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 284 (540)
+-..-.|++..++.-..++.. ......-..+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 344457777777774333321 12223344455777777766531 11123332333332222 211
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccC-CCCcccHHHHHHHHHcCCCHHHHHHHHHH
Q 042609 285 EAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEAR-KYAIKPFSSVIRSLCRMKDVHGAKTLLSK 363 (540)
Q Consensus 285 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 363 (540)
|...|++..+.+ .++...+..+-..+... |++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555444333 23333333333333333 555555555555433322 11333455555555555566666665555
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 364 MISEGPPP-----GNAVFNSVISAYSK----AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 364 m~~~g~~p-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
|.+. .| +..+...|..++.. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5542 33 23333334433221 22555555555555444 233222233333555555555555555544
Q ss_pred HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 435 KKNH---------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 435 ~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+.. -+-|+.+...+|..+...|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3310 01233444344444444444 555555555543
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=5.8e-08 Score=79.09 Aligned_cols=130 Identities=20% Similarity=0.149 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|..+|+.+.+..+. +...|..+...+...|++++|+..|+++...+ +.+...+..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 344555667778888888888887776553 67778888888888888888888888887654 446677777778
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.+...|++++|.++++.+.+.. +.+..++..+...+.+.|++++|...|+++...+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888877653 3456677777788888888888888887776543
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=7.8e-08 Score=78.31 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
|..+...|...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 44455555556666666666665554422 244555555556666666666666666655543 2345555666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.|++++|.++++++.+.. +.+...+..+...+. +.|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH-HHccHHHHHHHHHHHHcc
Confidence 666666666666665432 123445555555554 566666666666666543
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=1.4e-07 Score=85.31 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 301 PQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVI 380 (540)
Q Consensus 301 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 380 (540)
+...+...-..+... |++++|+..|++.......++...+..+..++...|++++|...|++..+... .+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 345555555566665 89999999999988876545667777788888999999999999999887632 3566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 042609 381 SAYSKAGDMTPAMEMLKLMRSRGLKPDV-------YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS---PVTYHTLI 450 (540)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li 450 (540)
..|...|++++|...|++..+.... +. ..|..+-..+...|++++|...|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999988876321 34 45777777888899999999999998886 354 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 451 RGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
..|...| ..+++++...+ ..+...|...... ..+.+++|+..+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKAK---ADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcC
Confidence 7775544 44556655443 2345556555532 4457899999999998864
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.91 E-value=1.4e-07 Score=85.33 Aligned_cols=206 Identities=14% Similarity=0.050 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHH
Q 042609 265 PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSV 344 (540)
Q Consensus 265 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 344 (540)
.|...+......+.+.|++++|...|++..+....++...+..+-..+... |++++|+..|++....... +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 467888889999999999999999999999877436677776665566665 9999999999999876433 55678899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHH
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPPGN-------AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD---VYTYTGL 414 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~l 414 (540)
...|...|++++|...+++..+... .+. ..|..+-..+...|++++|+..|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 9999999999999999999987532 244 45777888899999999999999999876 455 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 415 MSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 415 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
...|... +..+++++...+ ..+...|..... ...+.+++|...|++..+. .|+......++
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 7777554 444566666554 334555554443 3456789999999999875 45554444444
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=1.5e-06 Score=81.17 Aligned_cols=244 Identities=8% Similarity=-0.041 Sum_probs=164.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
+-..-.|.+..++.- ..+.....+...-.-+.++|...|+.+.. ..-.|.... -.++..|... +
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a-~~~la~~~~~-~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKV-LDLYVQFLDT-K-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHH-HHHHHHHHTT-T--
T ss_pred HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHH-HHHHHHHhcc-c--
Confidence 334456787777662 22222222233334455778877776532 111233222 2333344432 2
Q ss_pred HHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP-PPGNAVFNSVISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (540)
|+..|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..|.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888877654 34455566888899999999999999999877654 23677888899999999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 399 MRSRGLKP-----DVYTYTGLMSGYA--NGG--QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 399 m~~~g~~p-----~~~t~~~ll~~~~--~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
|.+. .| +..+...|..++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9876 56 3666777777743 334 899999999999876 466444455555899999999999999977
Q ss_pred HHC-----CC----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 470 KDV-----GV----QPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 470 ~~~-----g~----~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
.+. .. +-|..+...+|.... ..|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~-~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLAL-MQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHH-HTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHH-HhCh--HHHHHHHHHHHhC
Confidence 642 00 235555635543333 5676 8999999999864
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=1.8e-07 Score=88.28 Aligned_cols=135 Identities=12% Similarity=-0.057 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-VEILNELIALFSKLGKGKAAFEVFNKFGDY----GCVA-NQET 234 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----g~~p-~~~t 234 (540)
|......+...|++++|...|++..+...+.+..++ ..+|+.+...|...|++++|+..|++..+. |-.. -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445556667777777777766665433211111 456777777777777777777777766442 1000 0234
Q ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 235 YYFTIEALSRR-KIFDWAWSVCEKMIETGSL-PD----SEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 235 ~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
++.+...|... |++++|...|++.++.... .+ ..+++.+...|.+.|++++|...|++..+
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555554 6666666666555442100 01 23445555555555555555555555554
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.83 E-value=2e-07 Score=88.03 Aligned_cols=200 Identities=18% Similarity=0.105 Sum_probs=113.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDY----GCVAN-QETYYFTIEALSRRKIFDWAWSVCEKMIETGSL-PD----SEKVGKI 273 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 273 (540)
...|...|++++|++.|++..+. |-+++ ..+|+.+..+|.+.|++++|...+++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888887776442 21222 456777777777888888887777776553100 01 2355666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCC
Q 042609 274 ISWFCKG-GKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMK 352 (540)
Q Consensus 274 i~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 352 (540)
...|... |++++|...|++..+.. | .. ++... ...++..+...+.+.|
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~--~-------------~~-~~~~~---------------~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWY--A-------------QD-QSVAL---------------SNKCFIKCADLKALDG 172 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH--H-------------HT-TCHHH---------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHH--H-------------hC-CChHH---------------HHHHHHHHHHHHHHhC
Confidence 6666664 67777666666554311 0 00 00000 0123556666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHH-
Q 042609 353 DVHGAKTLLSKMISEGPPPGN------AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD------VYTYTGLMSGYA- 419 (540)
Q Consensus 353 ~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~- 419 (540)
++++|...|++..+....... ..|..+..++...|++++|...|++..+. .|+ ...+..++.+|.
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHc
Confidence 777777777777664332221 14555666677777777777777776543 222 112344555554
Q ss_pred -hcCCHHHHHHHHHHHHH
Q 042609 420 -NGGQMEEACEILNEAKK 436 (540)
Q Consensus 420 -~~g~~~~A~~~~~~m~~ 436 (540)
..+++++|...|+.+..
T Consensus 251 ~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TCTTTHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHhccCCc
Confidence 34567777777766544
No 92
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.83 E-value=1.1e-05 Score=84.44 Aligned_cols=343 Identities=12% Similarity=0.043 Sum_probs=228.7
Q ss_pred ccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhCC-CCCCH
Q 042609 157 TSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK---GKAAFEVFNKFGDYG-CVANQ 232 (540)
Q Consensus 157 ~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~g-~~p~~ 232 (540)
+...+..++...-+.+.++.++.+|+.+....+. +...|...+..-.+.|+ ++.+.++|++..... ..|+.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-----~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-----MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 4556778888888888999999999999987765 88899999999889998 999999999998753 24888
Q ss_pred HHHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIF--------DWAWSVCEKMIE-TGS-LP-DSEKVGKIISWFCK---------GGKAKEAHVVYTL 292 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 292 (540)
..|..-+....+.++. +.+.++|+..+. .|. .+ +...|...+..... .++++.+.++|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888877766665543 334577777654 365 45 45788888876542 3457888999998
Q ss_pred HHHcCCCCCHHHHHH---HHHHHHhCC---------chHHHHHHHHHHhHhc--cCC---CC------------------
Q 042609 293 AREKKMYPPQSVVAF---LISSLCQED---------ETVKLALDMLDDFSGE--ARK---YA------------------ 337 (540)
Q Consensus 293 m~~~~~~p~~~~~~~---ll~~~~~~~---------~~~~~a~~~~~~m~~~--~~~---~~------------------ 337 (540)
+.......-..+|.. +...+-... ..++.|...+.++... ++. |.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 875321112334432 222221100 1122334444433211 111 00
Q ss_pred --cccHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCC
Q 042609 338 --IKPFSSVIRSLCRMK-------DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAM-EMLKLMRSRGLKPD 407 (540)
Q Consensus 338 --~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~ 407 (540)
...|...+.---..+ ..+.+..+|++++.. ++-+...|-..+.-+.+.|+.++|. .+|+..... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 012444443333322 123456778888765 4557778888888888899999996 999998864 4446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKNH---------SRLS------------PVTYHTLIRGYCKLEEFDCALKLL 466 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~ 466 (540)
...|-..+...-+.|++++|.++|+.+.+.. -.|+ ...|...++...+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677888888889999999999999988641 0132 346888888888899999999999
Q ss_pred HHHHHC-C-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 467 NEMKDV-G-VQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 467 ~~m~~~-g-~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
.+.++. + ..+......+.+.- ...++.+.|.++|+..++.
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~--~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEY--HISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHH--TTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHH
Confidence 999875 2 22333333333321 1245689999999999876
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=1.8e-07 Score=86.67 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CC-CHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---QETYYFTIEALSRRKIFDWAWSVCEKMIETGS-LP-DSEKV 270 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~ 270 (540)
+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..++.+.|++++|...|+..++... .| ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 67778888888889999999999999998754 223 67788888889999999999999999887632 11 24556
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHH
Q 042609 271 GKIISWFCK--------GGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFS 342 (540)
Q Consensus 271 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 342 (540)
..+..++.+ .|++++|...|+++.+.. |+..... .+...+...... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~--------------~a~~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVD--------------DATQKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHH--------------HHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHH--------------HHHHHHHHHHHH----HHHHHH
Confidence 677777777 888888888888877654 3221111 010000000000 001144
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHC
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPP--GNAVFNSVISAYSKA----------GDMTPAMEMLKLMRSR 402 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 402 (540)
.+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 55666777777777777777776542221 233555556666654 6666666666666654
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=1.1e-06 Score=78.63 Aligned_cols=180 Identities=11% Similarity=0.000 Sum_probs=135.6
Q ss_pred HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 042609 321 LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG----DMTPAMEML 396 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~ 396 (540)
+|+..|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|-..|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666554 56667778888888889999999999888765 56677777777777 6 889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYAN----GGQMEEACEILNEAKKNHSR-LSPVTYHTLIRGYCK----LEEFDCALKLLN 467 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 467 (540)
++..+.| +...+..|-..|.. .++.++|...|++..+.|.. -++..+..|...|.. .++.++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9888764 66677777777776 78999999999999887621 026788888888888 788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCCCC
Q 042609 468 EMKDVGVQPNVDEYNKLIQSLCLKAL-----DWRTAEKLLEDMRLKGLHL 512 (540)
Q Consensus 468 ~m~~~g~~p~~~~~~~ll~~~~~~~g-----~~~~A~~l~~~m~~~g~~p 512 (540)
+..+.+ .+...+..|-..|....| ++++|.++|++..+.|...
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 998762 234455556555553324 8999999999998887543
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.71 E-value=6.9e-07 Score=79.60 Aligned_cols=172 Identities=12% Similarity=0.055 Sum_probs=110.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNS----------------VISAYSKAGDMTPAMEMLKLMRSRGLKPDVY 409 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 409 (540)
..+...|++++|...|++..+..+ -+...|.. +..+|.+.|++++|...|++..+.... +..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHH
Confidence 344455666666666666554321 12333444 778888999999999999888876432 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHH--HHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE--FDCALKLLNEMKDVGVQPNVDEY--NKLI 485 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~--~~ll 485 (540)
.|..+...|...|++++|...|++..+.. +-+...|..+...|...|+ .+.+...++... .|+...+ ...-
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g 164 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHH
Confidence 88888889999999999999999988864 3467788888888766554 344555555554 3443332 2222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Q 042609 486 QSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 486 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~l~ 527 (540)
.++. ..|++++|...|++.++. .|+......+.-+.+++
T Consensus 165 ~~~~-~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~i~~~~ 203 (208)
T 3urz_A 165 LSKL-FTTRYEKARNSLQKVILR--FPSTEAQKTLDKILRIE 203 (208)
T ss_dssp HHHH-HHHTHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHH
T ss_pred HHHH-HccCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 2333 567899999999998864 56655444444444444
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.69 E-value=9.5e-07 Score=78.70 Aligned_cols=124 Identities=13% Similarity=0.042 Sum_probs=60.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC-
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQE- 315 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~- 315 (540)
+..++.+.|++++|...|++.++.. +-+...+..+..+|...|++++|...|++..+.+ |+ ...+..+-..++..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 5556666666666666666666543 2345566666666666666666666666666544 33 23333333332222
Q ss_pred CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 316 DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
.+....+...++.... ..|....+.....++...|++++|...|++..+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0122233333333221 111111122233334445666666666666654
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=1.4e-06 Score=82.76 Aligned_cols=229 Identities=11% Similarity=0.000 Sum_probs=136.7
Q ss_pred hcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW 250 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (540)
.|++++|..++++..+.... . .+...+++++|...|++. ...|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHH
Confidence 46677888888877764432 1 011147778888777764 345667788888
Q ss_pred HHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHH
Q 042609 251 AWSVCEKMIETG----SLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDM 325 (540)
Q Consensus 251 a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 325 (540)
|...|.+..+.. -.. -..+|+.+...|.+.|++++|...|++..+.. .. .|+...+.
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~-~g~~~~~a-- 116 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY---------------VE-NGTPDTAA-- 116 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------------HT-TTCHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------------HH-cCCHHHHH--
Confidence 888887765531 100 13467777778888888888888887765310 11 13222211
Q ss_pred HHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 326 LDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-----GNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
.++..+...|.. |++++|...|++..+..... ...+++.+...|.+.|++++|+..|++..
T Consensus 117 -------------~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 117 -------------MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp -------------HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 224445555656 77777777777665421100 13466777778888888888888887765
Q ss_pred HC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 042609 401 SR----GLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS------PVTYHTLIRGYCKLEEFDCALK 464 (540)
Q Consensus 401 ~~----g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~ 464 (540)
+. +..+. ...+..+..++...|++++|...|++.. .. |+ ......++.+| ..|+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 42 11111 2255666666777788888888888877 42 21 12344445544 4566655555
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=2.3e-07 Score=98.51 Aligned_cols=166 Identities=13% Similarity=0.003 Sum_probs=126.0
Q ss_pred CchHHHHHHHHHHhH--------hccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 316 DETVKLALDMLDDFS--------GEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG 387 (540)
Q Consensus 316 ~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 387 (540)
.|++++|++.+++.. .. ...+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence 388888988888877 32 12345567778888888899999999998888753 336778888888888899
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 388 DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLN 467 (540)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (540)
++++|...|++..+.... +...|..+..+|.+.|++++ ...|++..+.. +-+...|..+..+|.+.|++++|.+.|+
T Consensus 482 ~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999888776322 56778888888888899888 88888888764 3466788888888999999999999988
Q ss_pred HHHHCCCCCC-HHHHHHHHHHH
Q 042609 468 EMKDVGVQPN-VDEYNKLIQSL 488 (540)
Q Consensus 468 ~m~~~g~~p~-~~~~~~ll~~~ 488 (540)
+..+. .|+ ...+..+..++
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTL 578 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHT
T ss_pred hhccc--CcccHHHHHHHHHHH
Confidence 88764 455 34454444444
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=2.4e-05 Score=73.61 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=145.7
Q ss_pred HhhcCh-hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---
Q 042609 169 CSSVGK-KEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG--KGKAAFEVFNKFGDYGCVANQETYYFTIEAL--- 242 (540)
Q Consensus 169 ~~~~~~-~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~--- 242 (540)
.+.+.+ ++|..+++.+..+.+. +..+||.--..+...| ++++++++++.+.... +-+..+|+.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 344444 5799999999998887 8889999998898888 9999999999998765 45666676655555
Q ss_pred -HhC---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042609 243 -SRR---KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK--EAHVVYTLAREKKMYPPQSVVAFLISSLCQED 316 (540)
Q Consensus 243 -~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 316 (540)
... +++++++.+++.+.+.. +-+-.+|+.-.-.+.+.|.++ ++.+.++.+.+.+ .-+...|+.--..+...
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l- 193 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSK- 193 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSS-
T ss_pred HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc-
Confidence 455 78889999999998864 457777877777777778777 8888888888766 33455555433222222
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP-AMEM 395 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~ 395 (540)
+.. . ....++++++.++++.... +-|...|+-+-..+.+.|+... +..+
T Consensus 194 ~~~----------------~-------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~ 243 (306)
T 3dra_A 194 KHL----------------A-------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEF 243 (306)
T ss_dssp GGG----------------C-------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHH
T ss_pred ccc----------------c-------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHH
Confidence 220 0 0001445555555555442 2355555555555555555333 3344
Q ss_pred HHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 396 LKLMRSRG--LKPDVYTYTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 396 ~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 244 ~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 244 SLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44443321 122555666666666666666666666666654
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.65 E-value=2.3e-06 Score=79.08 Aligned_cols=164 Identities=12% Similarity=0.011 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC-HHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG---NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD-VYTYTGLM 415 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll 415 (540)
+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|++..+... .|. ...+..+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 333444444555555555555555443211 1 33444455555555555555555555544311 111 23344444
Q ss_pred HHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHH-----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 416 SGYAN--------GGQMEEACEILNEAKKNHSRLS-PVT-----------------YHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 416 ~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~~-----------------~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
.++.. .|++++|...|+++.+.. |+ ... +..+...|.+.|++++|...|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44444 555555555555555432 11 111 255677888899999999999988
Q ss_pred HHCCCCCC----HHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHCCC
Q 042609 470 KDVGVQPN----VDEYNKLIQSLCLKA----------LDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 470 ~~~g~~p~----~~~~~~ll~~~~~~~----------g~~~~A~~l~~~m~~~g~ 510 (540)
.+.. |+ ...+..+..+|. .. |++++|.+.++++.+...
T Consensus 175 l~~~--p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 175 FDAY--PDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHC--TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHC--CCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 8642 33 344555555554 33 788999999999887643
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=5.6e-07 Score=85.59 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHhHhccCCC-----CcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 042609 317 ETVKLALDMLDDFSGEARKY-----AIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----GPPP-GNAVFNSVISAYSKA 386 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~ 386 (540)
|++++|...|.+........ ...+|+.+...|.+.|++++|...|++..+. |-.. -..+++.+...|..
T Consensus 50 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 66666666665544321110 0223555556666666666666666655432 1100 12345555555555
Q ss_pred CChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhc
Q 042609 387 GDMTPAMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKN----HSRLS-PVTYHTLIRGYCKL 456 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~ 456 (540)
|++++|+..|++..+. |-.. ...++..+...|.+.|++++|...|++..+. +..+. ...+..+...+...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 6666666666655432 1000 0244555556666666666666666665542 11111 12444445555555
Q ss_pred CCHHHHHHHHHHHH
Q 042609 457 EEFDCALKLLNEMK 470 (540)
Q Consensus 457 g~~~~A~~~~~~m~ 470 (540)
|++++|...|++..
T Consensus 209 g~~~~A~~~~~~al 222 (307)
T 2ifu_A 209 ADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666655
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.63 E-value=1.7e-07 Score=78.77 Aligned_cols=134 Identities=13% Similarity=-0.021 Sum_probs=104.8
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (540)
...|++++|...+.......+. +...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 4457788888888877665554 56677788999999999999999999998865 55788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHH
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVV-YTLAREKKMYPPQSVVAFLISS 311 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~ll~~ 311 (540)
++|...|++.++.. +-+..++..+...|.+.|+.++|.+. +++..+.. |+......+...
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ 142 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 99999999998864 34678899999999999998876655 57777644 554443333333
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=1.4e-06 Score=90.64 Aligned_cols=153 Identities=12% Similarity=0.017 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEML 396 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 396 (540)
|++++|++.|++..+... .+...+..+...|.+.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 778889999888776532 245668888888889999999999999988763 336778888888999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 042609 397 KLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL---EEFDCALKLLNEMKDVG 473 (540)
Q Consensus 397 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 473 (540)
++..+... -+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...|... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88877632 257788888889999999999999999888764 34577888888888888 99999999999888653
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=2.1e-06 Score=77.45 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=96.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHhHhccCCCC--cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 042609 308 LISSLCQEDETVKLALDMLDDFSGEARKYA--IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGN--AVFNSVISAY 383 (540)
Q Consensus 308 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~ 383 (540)
+-..+... |++++|+..|+++........ ...+..+..+|.+.|++++|...|+++.+..+.... ..+-.+..++
T Consensus 10 ~a~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 10 TAQQKLQD-GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 33344444 677777777777665432111 134555666667777777777777776654322111 1233333333
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-----------------H
Q 042609 384 SKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSP-V-----------------T 445 (540)
Q Consensus 384 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-----------------~ 445 (540)
.+.|.. .+ ..|..+-..+...|+.++|...|+++++.. |+. . .
T Consensus 89 ~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 89 MALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHH
Confidence 321100 00 000011111122345555555555555442 221 1 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV----DEYNKLIQSLCLKALDWRTAEKLLEDMRLKGL 510 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~ 510 (540)
...+...|.+.|++++|...|+++++. .|+. ..+..+..++. +.|++++|.+.++.+...+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCC
Confidence 134566788899999999999998865 3442 45666666665 88999999999998887654
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=5.9e-06 Score=73.74 Aligned_cols=175 Identities=14% Similarity=0.008 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC----ChhHH
Q 042609 176 EVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK----IFDWA 251 (540)
Q Consensus 176 ~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a 251 (540)
+|.+.|++..+.+ ++..+..|...|...+++++|++.|++..+.| +...+..+-..|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCC-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 4666676666542 67888888888888899999999998888765 56677777777776 5 78888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhC---CchHHH
Q 042609 252 WSVCEKMIETGSLPDSEKVGKIISWFCK----GGKAKEAHVVYTLAREKKMYPP---QSVVAFLISSLCQE---DETVKL 321 (540)
Q Consensus 252 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~---~~~~~~ 321 (540)
.+.|++..+.| +...+..|..+|.. .+++++|...|++..+.+ +. ...+..+-..+... .++.++
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 88888887764 56667777777766 677788888777776655 21 22333332233220 134555
Q ss_pred HHHHHHHhHhccCCCCcccHHHHHHHHHcC-C-----CHHHHHHHHHHHHHCC
Q 042609 322 ALDMLDDFSGEARKYAIKPFSSVIRSLCRM-K-----DVHGAKTLLSKMISEG 368 (540)
Q Consensus 322 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 368 (540)
|+..|++..+.+ .+...+..+...|... | +.++|...|++..+.|
T Consensus 148 A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555555554431 1222344444444321 1 4555555555544443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=1.1e-06 Score=91.34 Aligned_cols=152 Identities=9% Similarity=-0.066 Sum_probs=88.6
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWA 251 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 251 (540)
|++++|...|++..+..+. +...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|
T Consensus 3 g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-----DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ------------------C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4556677777766665543 56777777777777777777777777776653 34566777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC---chHHHHHHHHH
Q 042609 252 WSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQED---ETVKLALDMLD 327 (540)
Q Consensus 252 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~---~~~~~a~~~~~ 327 (540)
.+.+++.++.. +.+...+..+..+|.+.|++++|.+.|++..+.. |+ ...+..+...+.. . |+.++|.+.++
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 77777776653 2356667777777777777777777777776654 33 3333333333333 3 67777777777
Q ss_pred HhHhcc
Q 042609 328 DFSGEA 333 (540)
Q Consensus 328 ~m~~~~ 333 (540)
+..+.+
T Consensus 153 ~al~~~ 158 (568)
T 2vsy_A 153 AAVAQG 158 (568)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 766543
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=1e-06 Score=76.08 Aligned_cols=158 Identities=6% Similarity=-0.060 Sum_probs=102.6
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA-L 242 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~-~ 242 (540)
....+...|++++|...|+...+..+. +...|..+...|...|++++|+..|++..... |+...+...... +
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS-----RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT-----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 334566778888899888887777765 78888888888889999999999998886653 354433332211 1
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCchHHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP-PQSVVAFLISSLCQEDETVKL 321 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~ 321 (540)
...+....|...+++.++.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+... |+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL-GQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH-CSSCH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh-CCCCc
Confidence 22223344677777777653 2356777777778888888888888888777655222 123444444444444 66666
Q ss_pred HHHHHHHhH
Q 042609 322 ALDMLDDFS 330 (540)
Q Consensus 322 a~~~~~~m~ 330 (540)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=5e-05 Score=71.39 Aligned_cols=236 Identities=9% Similarity=0.018 Sum_probs=153.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCH
Q 042609 210 LGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK--IFDWAWSVCEKMIETGSLPDSEKVGKIISWF----CKGGKA 283 (540)
Q Consensus 210 ~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~g~~ 283 (540)
....++|++++++++..+ +-+...|+.--..+...+ ++++++++++.++.... -+..+|+.-...+ .+.+
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~-- 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNN-- 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTT--
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcc--
Confidence 344567888888887754 345556777666777777 77777777777776532 2333343322222 2220
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHH--HHHHHH
Q 042609 284 KEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVH--GAKTLL 361 (540)
Q Consensus 284 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~ 361 (540)
. .+++++++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.+
T Consensus 122 ------------------------------~-~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 122 ------------------------------N-DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ------------------------------T-CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ------------------------------c-cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 0 03344444555554443222 3444555555555556665 888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 042609 362 SKMISEGPPPGNAVFNSVISAYSKAGD------MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEE-ACEILNEA 434 (540)
Q Consensus 362 ~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~m 434 (540)
+++.+..+ -|...|+.-...+.+.|. ++++++.++++...... |...|+-+-..+.+.|+... +..+..++
T Consensus 170 ~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 170 DKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 88887643 477777766666666666 89999999999887554 88899998888888887444 55566666
Q ss_pred HHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 435 KKNH--SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKL 484 (540)
Q Consensus 435 ~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 484 (540)
.+.+ -..+...+..+.+.|.+.|+.++|.++++.+.+. +.|...-|...
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDY 298 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHH
Confidence 5432 1347789999999999999999999999999863 24555444443
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.57 E-value=6.8e-06 Score=74.05 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 042609 231 NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSL-P-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS----V 304 (540)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~ 304 (540)
+...+..+...+.+.|++++|...|+.+++.... + ....+..+..+|.+.|++++|...|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4556666777888899999999999999875321 1 13567788889999999999999999988765 3321 1
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 305 VAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYS 384 (540)
Q Consensus 305 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 384 (540)
+..+-..+... +. .. ...|..+...+...|+.++|...|+++.+..+. +...+.+....
T Consensus 81 ~~~~g~~~~~~-~~-----~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l-- 139 (225)
T 2yhc_A 81 MYMRGLTNMAL-DD-----SA------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHH-HC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH--
T ss_pred HHHHHHHHHhh-hh-----hh------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH--
Confidence 21111122111 10 00 111233344455677888888888888765321 22222221110
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHH
Q 042609 385 KAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLS----PVTYHTLIRGYCKLEEFD 460 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~ 460 (540)
+ .+...+. .....+...|.+.|++++|...|+++++.. |+ ...+..+..+|.+.|+.+
T Consensus 140 --~------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 140 --V------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp --H------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred --H------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcH
Confidence 0 0001110 112345567788888888888888888763 33 256777888888888888
Q ss_pred HHHHHHHHHHHCC
Q 042609 461 CALKLLNEMKDVG 473 (540)
Q Consensus 461 ~A~~~~~~m~~~g 473 (540)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 8888888887653
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.56 E-value=4.1e-07 Score=96.62 Aligned_cols=171 Identities=11% Similarity=-0.079 Sum_probs=98.7
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 208 SKLGKGKAAFEVFNKFG--------DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK 279 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 279 (540)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|.+.+++.++.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666665 322 3445566666666666666666666666666543 2345566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHH
Q 042609 280 GGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAK 358 (540)
Q Consensus 280 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 358 (540)
.|++++|...|++..+.+ |+ ...+..+-..+... |++++ ++.|++..+.+.. +...|..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666544 32 23333333333343 66666 6666666554322 3455667777777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 042609 359 TLLSKMISEGPPPG-NAVFNSVISAYSKAG 387 (540)
Q Consensus 359 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 387 (540)
..|++..+. .|+ ...+..+..++...+
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 777776653 333 445555555654433
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=1.2e-06 Score=82.29 Aligned_cols=162 Identities=9% Similarity=-0.020 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISS- 311 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 311 (540)
..+..+...+.+.|++++|...|++.++.. +-+...+..+...|.+.|++++|...++++.... |+..........
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 344444444555555555555555554432 1234445555555555555555555555443322 333222221111
Q ss_pred HHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChh
Q 042609 312 LCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPP-GNAVFNSVISAYSKAGDMT 390 (540)
Q Consensus 312 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 390 (540)
+... ++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..+...|...|+.+
T Consensus 195 l~~~-~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQ-AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhh-cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 1111 33444444444444332 1234445555555666666666666666665532211 1345556666666666666
Q ss_pred HHHHHHHHH
Q 042609 391 PAMEMLKLM 399 (540)
Q Consensus 391 ~A~~~~~~m 399 (540)
+|...|++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 665555443
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.54 E-value=7.6e-07 Score=74.70 Aligned_cols=84 Identities=13% Similarity=0.001 Sum_probs=37.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|...|++..+.. +-+...|..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444444444444444444444443211 34444444444455555555555555444432 123444444555555555
Q ss_pred CHHHHH
Q 042609 458 EFDCAL 463 (540)
Q Consensus 458 ~~~~A~ 463 (540)
++++|.
T Consensus 114 ~~~~aa 119 (150)
T 4ga2_A 114 VTDGRA 119 (150)
T ss_dssp SSSSHH
T ss_pred ChHHHH
Confidence 544433
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.53 E-value=8e-07 Score=76.77 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG-YA 419 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~ 419 (540)
+......+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...|+..... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 4455566667777777777777765532 235566677777777777777777777766544 2333322221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCCHHHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP-NVDEYNKLIQSLCLKALDWRTA 498 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~g~~~~A 498 (540)
..+...+|...+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+. ..|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~-~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS-ALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH-HHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH-HhCCCCcH
Confidence 2222234566777766653 2346777777777777788888888877777653222 2345666665554 66677777
Q ss_pred HHHHHHHH
Q 042609 499 EKLLEDMR 506 (540)
Q Consensus 499 ~~l~~~m~ 506 (540)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=2.3e-05 Score=73.77 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRS----R-GLKPD-VYTYTGLMSGYANGGQMEEACEILNEAKKN----HSRLS-P 443 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 443 (540)
+++.+...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 355555555555555555555555442 1 11111 225555666666666666666666655432 11112 4
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 042609 444 VTYHTLIRGYCKLEE-FDCALKLLNEMK 470 (540)
Q Consensus 444 ~~~~~li~~~~~~g~-~~~A~~~~~~m~ 470 (540)
.+|..+...|.+.|+ +++|.+.|++..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 566666666666663 466666666554
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=2.8e-05 Score=73.09 Aligned_cols=164 Identities=13% Similarity=0.098 Sum_probs=121.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGP-PPGN----AVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYT 412 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~ 412 (540)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++..+... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999886422 2221 1334566677778899999999999987422 223 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHH
Q 042609 413 GLMSGYANGGQMEEACEILNEAKK----N-HSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKD----VGVQPN-VDEY 481 (540)
Q Consensus 413 ~ll~~~~~~g~~~~A~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 481 (540)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++..+ .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 11122 24788999999999999999999998763 333333 4556
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 042609 482 NKLIQSLCLKAL-DWRTAEKLLEDMRL 507 (540)
Q Consensus 482 ~~ll~~~~~~~g-~~~~A~~l~~~m~~ 507 (540)
..+-..+. +.| ++++|.+.+++...
T Consensus 240 ~~lg~~~~-~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLR-KLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCcHHHHHHHHHHHHH
Confidence 66665655 777 57999999988763
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=3.8e-06 Score=78.95 Aligned_cols=164 Identities=11% Similarity=-0.003 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII- 274 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li- 274 (540)
+...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++..... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 45667777777888888888888888877654 446677777888888888888888888877654 34544333222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCC-CcccHHHHHHHHHcCC
Q 042609 275 SWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKY-AIKPFSSVIRSLCRMK 352 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g 352 (540)
..+.+.++.++|...|++..... |+ ...+..+-..+... |++++|+..|+++....... +...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23556677777788887777655 44 44444455555554 88888888888877754322 2456788888888888
Q ss_pred CHHHHHHHHHHHH
Q 042609 353 DVHGAKTLLSKMI 365 (540)
Q Consensus 353 ~~~~a~~~~~~m~ 365 (540)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=7.4e-06 Score=72.80 Aligned_cols=127 Identities=20% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
+..+...+...|++++|...|++. +.|+...+..+...|.+.|++++|...|++..+.. ..+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 334555666777777777777765 35566777777777777778888877777776653 2356677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 421 GGQMEEACEILNEAKKNHSR--------------L-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.|++++|...|++..+.... | ....+..+...|.+.|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 78888888877777764311 1 1266777777788888888888888887765
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.48 E-value=9.4e-05 Score=74.97 Aligned_cols=314 Identities=11% Similarity=-0.040 Sum_probs=172.2
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHh----
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK-GKAAFEVFNKFGDY-GC-VANQETYYFTIEALSR---- 244 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~~-g~-~p~~~t~~~ll~~~~~---- 244 (540)
++++.+..+|+..... .|++..|...+....+.+. .+....+|+..... |. +.+...|..-+..+..
T Consensus 28 ~~~e~~~~iferal~~------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~ 101 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDE 101 (493)
T ss_dssp TCHHHHHHHHHHHSTT------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSH
T ss_pred CCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhh
Confidence 7888899999876652 2689999999988877763 45677788887653 43 3466777777766542
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCK-------------GGKAKEAHVVYTLAREKKMYPPQSVVAFLISS 311 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 311 (540)
.++++.+..+|+..+......-...|......-.. .+.+..|..+++.+...--..+...|...+.-
T Consensus 102 ~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 35688899999999874221112233333222111 12233344445444421100123355544433
Q ss_pred HHhCC-c-----hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 312 LCQED-E-----TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSK 385 (540)
Q Consensus 312 ~~~~~-~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 385 (540)
--... + ..+.+..+|++..... ......|...+.-+.+.|+.+.|..++++.... +.+...+. .|+.
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 22210 1 1345677888877643 334666777888888999999999999999987 33332222 2222
Q ss_pred cCChhHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 386 AGDMTPAMEMLKLMRSRG---------LKP---DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGY 453 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (540)
..+.++. ++.+.+.- ..+ ....|...+..+.+.+.++.|..+|++. +.. ..+...|...+..-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence 2222222 22222110 000 1234555555555667777777777777 321 22444443322222
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042609 454 CKLE-EFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDM 505 (540)
Q Consensus 454 ~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m 505 (540)
...| +.+.|..+|+...+.- .-+...+...++-. .+.|+.+.|..+|++.
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e-~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL-LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHHTCHHHHHHHHHHS
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 2223 5777777777776532 11233344455433 3566777777776665
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.46 E-value=0.00028 Score=71.43 Aligned_cols=329 Identities=9% Similarity=-0.004 Sum_probs=197.6
Q ss_pred cccchHHHHHHHHHhhcC-hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHhhCCCCC
Q 042609 156 VTSGVVDALLKAICSSVG-KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFS----KLGKGKAAFEVFNKFGDYGCVA 230 (540)
Q Consensus 156 ~~~~~~~~li~~~~~~~~-~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~f~~m~~~g~~p 230 (540)
++...+...++...+.+. .+....+|+.....-.. ...+...|...+..+. ..|+.+.+..+|++.+......
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~ 122 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS 122 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhh
Confidence 555667777776666553 35577888876664211 1137789999998765 3467889999999998742111
Q ss_pred CHHHHHHHHHHHHh-------------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHH
Q 042609 231 NQETYYFTIEALSR-------------RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG--K-----AKEAHVVY 290 (540)
Q Consensus 231 ~~~t~~~ll~~~~~-------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~-----~~~A~~~~ 290 (540)
-...|..-...-.. ...+..|..+++.+...--..+...|...++.-...+ - .+.+..+|
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 12222222221111 1123344555555443200113446666655533321 1 34567889
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--
Q 042609 291 TLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG-- 368 (540)
Q Consensus 291 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 368 (540)
+++.... .-....|...+.-+... |+.+.|..+|++.... |....... .|+...+.++. ++.+.+.-
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGI-GQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHh
Confidence 9988754 34466677666655555 9999999999999887 44433211 23222222222 22222110
Q ss_pred -------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 042609 369 -------P---PPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTG--LMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 369 -------~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
. ......|...+..+.+.+..+.|..+|+.. +.. ..+...|.. .+.... .++.+.|..+|+...+
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHH
Confidence 0 011245666677777788899999999998 321 123444432 233222 3369999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 437 NHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
.. +-++..|...++...+.|+.+.|..+|+.+. .....|...+. +-...|+.+.+.++++++..
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~-fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE-YEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH-HHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHH
Confidence 53 2245667778888889999999999999973 25667777775 44477899999999988864
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.45 E-value=1.6e-05 Score=70.60 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
.+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|...+++..+.. +.+...|..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566778889999999999998774 5688999999999999999999999999998874 457789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 042609 455 KLEEFDCALKLLNEMKDVGVQ--------------PN-VDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~--------------p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~ 511 (540)
..|++++|...|++..+.... |+ ...+..+-..+. +.|++++|.+.|++..+....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999875311 11 255666666665 889999999999999886543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=8.6e-06 Score=68.91 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++.++.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344444445555555555555555544432 2234444555555555555555555555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 042609 278 CKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~ 296 (540)
...|++++|...|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=4.2e-06 Score=67.69 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567777778888888888888888877654 4567788888888888888888888888887764 3456778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 042609 277 FCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~ 297 (540)
|...|++++|.+.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 888888888888888877754
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=4.3e-06 Score=70.01 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+.+.|++++|+..|++..... +-+...|..+..++...|++++|...|++.++.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 66788888889999999999999999998765 5578889999999999999999999999998874 345678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 276 WFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
+|.+.|++++|...|+...+.. |+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 9999999999999999988755 554
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=4.3e-06 Score=72.04 Aligned_cols=121 Identities=7% Similarity=-0.054 Sum_probs=101.3
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhCCCh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA-LSRRKIF 248 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~-~~~~~~~ 248 (540)
..|++++|...++...+..+. +...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 457788899999988887765 88999999999999999999999999998764 4577788888888 7789998
Q ss_pred --hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 249 --DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 249 --~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
++|...++..++.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999998874 3467888899999999999999999999998865
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=1.2e-05 Score=64.08 Aligned_cols=99 Identities=23% Similarity=0.193 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|..+++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566666677777777777777777766543 3456666667777777777777777777766653 2455666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 042609 277 FCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~ 297 (540)
|...|++++|...|+++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 777777777777777766544
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=2.2e-05 Score=66.27 Aligned_cols=128 Identities=8% Similarity=-0.042 Sum_probs=101.3
Q ss_pred chHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 159 GVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 159 ~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
..+..+...+...|++++|...|+...+..+. +..+|..+...+...|++++|+..|++..+.. +.+...+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 87 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34666777788889999999999999887765 78999999999999999999999999988764 4578889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG--KIISWFCKGGKAKEAHVVYTLA 293 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 293 (540)
..++...|++++|...+++..+... .+...+. .++..+.+.|++++|...+...
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999999999999987642 3444443 3333466667777777776654
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.38 E-value=1e-05 Score=65.32 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+......+.+.|++++|...|++..+..+. +..+|..+...|.+.|++++|+..|++..+.+ +.+...|..+..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-----NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 344566778899999999999999998876 89999999999999999999999999998865 567889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI 273 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 273 (540)
++...|++++|.+.|++.++.. +-+...+..|
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 9999999999999999999863 2344444444
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.38 E-value=6.6e-05 Score=70.55 Aligned_cols=127 Identities=14% Similarity=0.056 Sum_probs=82.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH---C-CCCC--CHHHHH
Q 042609 344 VIRSLCRMKDVHGAKTLLSKMISEGP---PPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRS---R-GLKP--DVYTYT 412 (540)
Q Consensus 344 li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~t~~ 412 (540)
+...+...|++++|...+++..+... .+. ..+|+.+...|...|++++|...|++..+ . +..+ ...+|.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 44455667777777777777664311 111 34677777778888888888888877652 2 1111 124677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042609 413 GLMSGYANGGQMEEACEILNEAKKNH----SRL-SPVTYHTLIRGYCKLEEFDCA-LKLLNEMK 470 (540)
Q Consensus 413 ~ll~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 470 (540)
.+...|.+.|++++|...+++..+.. ... -..+|..+...|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77777888888888888887765431 111 156777778888888888888 66666654
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.33 E-value=2.8e-06 Score=70.97 Aligned_cols=110 Identities=16% Similarity=0.062 Sum_probs=89.9
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 181 WDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 181 f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
|+.+.+..+. +...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...|++.+.
T Consensus 10 ~~~al~~~p~-----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 10 IAMLNEISSD-----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHTTCCHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHh-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444444443 67788888899999999999999999988764 55788888899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 261 TGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 261 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.. +.+...+..+..+|...|++++|...|+...+..
T Consensus 84 l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 84 MD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 64 3466788888999999999999999999887643
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.33 E-value=2.1e-05 Score=62.57 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
...+..+...+...|++++|.++|+++.+.. ..+..++..+...|.+.|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555666666666666666655442 1245555566666666666666666666665543 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 042609 453 YCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~ 472 (540)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666543
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.32 E-value=1e-05 Score=71.12 Aligned_cols=156 Identities=8% Similarity=-0.001 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 042609 350 RMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----GLKP-DVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 350 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~ 424 (540)
..|++++|.++++.+... ......++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1223445555555566666666666666555431 1111 234455555566666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHhCC
Q 042609 425 EEACEILNEAKKN----HSRL--SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVG-VQPNV----DEYNKLIQSLCLKAL 493 (540)
Q Consensus 425 ~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~~g 493 (540)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+.. -..+. .++..+-..+. ..|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ-QEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HCc
Confidence 6666666655442 1011 12345556666666666666666666654210 00111 11233333333 566
Q ss_pred CHHHHHHHHHHHHH
Q 042609 494 DWRTAEKLLEDMRL 507 (540)
Q Consensus 494 ~~~~A~~l~~~m~~ 507 (540)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66776666665543
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.00034 Score=66.55 Aligned_cols=130 Identities=7% Similarity=-0.021 Sum_probs=95.3
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC-C-Ch
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLG-KGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR-K-IF 248 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~ 248 (540)
...++|.++++.+....++ +..+||.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++
T Consensus 68 e~se~AL~lt~~~L~~nP~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 4446799999999998887 8899999888888888 5999999999998765 56778888877777766 6 88
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHH
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAK--------EAHVVYTLAREKKMYPPQSVVAFLI 309 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll 309 (540)
++++++++.+++.. +-|..+|+.-.-++.+.|.++ ++.+.++++.+.+ .-+...|+..-
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~ 208 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRW 208 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 89999999998764 356667765555554444444 6666666666654 23444554433
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=0.00013 Score=68.54 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=120.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--HHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG-----NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGL---KPD--VYT 410 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 410 (540)
+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44566778889999999999988876532211 12234456677888999999999999875421 222 458
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKK---N-HSRL--SPVTYHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPN-VD 479 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 479 (540)
|+.+...|...|++++|...+++..+ . +-.+ ...+|..+...|.+.|++++|...+++..+. +.... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 89999999999999999999999873 2 1111 1268899999999999999999999987632 22222 45
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 042609 480 EYNKLIQSLCLKALDWRTA-EKLLEDMR 506 (540)
Q Consensus 480 ~~~~ll~~~~~~~g~~~~A-~~l~~~m~ 506 (540)
+|..+-..|. +.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~-~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLR-KLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCcHHHHHHHHHHHH
Confidence 5666666665 88899999 77787765
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.31 E-value=2e-05 Score=63.30 Aligned_cols=98 Identities=22% Similarity=0.100 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3444555555555555555555555554432 2344445555555555555555555555554432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 042609 277 FCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~ 296 (540)
|.+.|++++|...|++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 55555555555555555443
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.29 E-value=2.7e-06 Score=81.97 Aligned_cols=149 Identities=12% Similarity=0.059 Sum_probs=102.4
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---------------QETYY 236 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---------------~~t~~ 236 (540)
+++++|...|+...+..+. +...|+.+...|.+.|++++|+..|++..+.. +.+ ...|.
T Consensus 127 ~~~~~A~~~~~~a~~~~p~-----~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE-----QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHH
Confidence 3444455555444333333 56788888888888999999999998887754 222 47788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPP-QSVVAFLISSLCQE 315 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 315 (540)
.+..++.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+.. |+ ...+..+-..+...
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
Confidence 88888888888888888888888764 3467788888888888888888888888887754 43 33444444444443
Q ss_pred CchHHHH-HHHHHHhH
Q 042609 316 DETVKLA-LDMLDDFS 330 (540)
Q Consensus 316 ~~~~~~a-~~~~~~m~ 330 (540)
|+.+++ ..+|+.|.
T Consensus 278 -~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 278 -RRQLAREKKLYANMF 292 (336)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 666666 34555443
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=0.00058 Score=64.93 Aligned_cols=253 Identities=10% Similarity=0.002 Sum_probs=136.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 042609 209 KLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK-IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG-G-KAKE 285 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 285 (540)
+.+..++|+++++++...+ +-+..+|+.--..+...+ .+++++++++.++... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 4455678999999998875 456677888877888888 5999999999999874 35667777766666665 6 7889
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH--------HHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC----
Q 042609 286 AHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK--------LALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD---- 353 (540)
Q Consensus 286 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---- 353 (540)
+..+++.+.+.+ .-+...|+.---.+... |.++ ++++.++++.+.... |..+|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 999999888765 33455555422211111 2222 555555555554322 44445444444444443
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 354 ---VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTP--AMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEAC 428 (540)
Q Consensus 354 ---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 428 (540)
++++++.++++.... +-|...|+-+-..+.+.|+... -..+. ...|...+ . ...+..
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~-------------~~~~~~ 282 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-P-------------DIETVE 282 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC-------------------------
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---cccccccc-c-------------cchhHH
Confidence 344555555444432 2244444444444444333200 00000 00000000 0 011222
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 429 EILNEAKKNH-----SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLI 485 (540)
Q Consensus 429 ~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 485 (540)
+...++...+ -.++......|++.|...|+.++|.++++.+.+. ..|-..-|....
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~ 343 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFR 343 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHH
Confidence 2222222111 1356677777778888888888888888877633 344444444433
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.26 E-value=9.2e-06 Score=74.74 Aligned_cols=185 Identities=8% Similarity=-0.064 Sum_probs=105.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhhCCCCCC-----------
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNEL-------IALFSKLGKGKAAFEVFNKFGDYGCVAN----------- 231 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~f~~m~~~g~~p~----------- 231 (540)
..++...|.+.|..+.+..+. ....|+.+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-----~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-----ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhChh-----hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCc
Confidence 468899999999999999887 88999988 5667777777777776666544 1221
Q ss_pred -----------HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042609 232 -----------QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYP 300 (540)
Q Consensus 232 -----------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 300 (540)
....-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... .|
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~ 165 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WP 165 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CS
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cC
Confidence 1223334556667778888877777766543 4433555555567777777777777764322 11
Q ss_pred CHH---HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCC--cccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 301 PQS---VVAFLISSLCQEDETVKLALDMLDDFSGEARKYA--IKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 301 ~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
+.. ....++...+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++..
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 1122222222223555555555555442221122 11233344444455555555555555544
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=9.1e-06 Score=71.42 Aligned_cols=121 Identities=11% Similarity=-0.083 Sum_probs=88.2
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCC-CCHHHHHHHHHHHHh
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGD----YGCV-ANQETYYFTIEALSR 244 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~g~~-p~~~t~~~ll~~~~~ 244 (540)
..|++++|.+.++.+..... ....+++.+...|...|++++|+..|++..+ .|.. ....++..+...+..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPA-----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTT-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChH-----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 46888899986655543211 2567899999999999999999999998865 2212 234567888888999
Q ss_pred CCChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIET----GSLP--DSEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
.|++++|...+++.++. +-.+ ....+..+...+...|++++|...+++..+
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999887654 2111 234577888888999999999998887653
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.24 E-value=1.2e-05 Score=67.12 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 042609 163 ALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEAL 242 (540)
Q Consensus 163 ~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~ 242 (540)
.+...+.+.|++++|...|+.+.+..+. +...|..+...|...|++++|+..|++..+.. +-+...|..+..++
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFY-----NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 3444667889999999999999998876 89999999999999999999999999998865 45688899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHH
Q 042609 243 SRRKIFDWAWSVCEKMIETGSLPDSE 268 (540)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~g~~p~~~ 268 (540)
.+.|++++|...|++.++.. |+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999863 5553
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=2.5e-05 Score=75.12 Aligned_cols=133 Identities=14% Similarity=-0.001 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT----------VEILNELIALFSKLGKGKAAFEVFNKFGDYGCV 229 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~ 229 (540)
.+..+...+.+.|++++|...|+...+..+....... ..+|+.+...|.+.|++++|+..|++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 4566777888899999999999999988765100000 6899999999999999999999999998865 5
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 042609 230 ANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH-VVYTLAR 294 (540)
Q Consensus 230 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~ 294 (540)
.+...|..+..++...|++++|...|++.++.. +.+...+..+..++.+.|+.++|. ..|+.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999874 346788889999999999999884 4566554
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=1.6e-05 Score=64.20 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45667777777777777777777777766543 3356666667777777777777777777766653 235666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|.+.|++++|.+.|++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 7777777777777777766543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.22 E-value=3e-05 Score=66.58 Aligned_cols=119 Identities=8% Similarity=0.038 Sum_probs=57.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 042609 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG-YCKLEEF--DCA 462 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~A 462 (540)
.|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+... |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555544432 1244455555555555555555555555555432 2244455555555 4455555 566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
...++++.+... -+...+..+...+. ..|++++|.+.+++..+.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAF-MQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhh
Confidence 666655554321 12333444443333 555666666666655554
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.22 E-value=3.5e-05 Score=61.78 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 375 VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYC 454 (540)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (540)
.+..+...+...|++++|...|++..... ..+...+..+...|...|++++|...+++..+.. +.+...+..+...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444444444555555555554444331 1134444444455555555555555555544432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042609 455 KLEEFDCALKLLNEMKD 471 (540)
Q Consensus 455 ~~g~~~~A~~~~~~m~~ 471 (540)
..|++++|...|++..+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 55555555555555543
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=3.1e-05 Score=71.21 Aligned_cols=189 Identities=10% Similarity=-0.001 Sum_probs=109.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhCCChhHHHHHHHHHHH------------CCCC-----
Q 042609 209 KLGKGKAAFEVFNKFGDYGCVANQETYYFT-------IEALSRRKIFDWAWSVCEKMIE------------TGSL----- 264 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~g~~p~~~t~~~l-------l~~~~~~~~~~~a~~~~~~m~~------------~g~~----- 264 (540)
..++...|.+.|.+..... +-....|..+ ...+.+.++..++...+..-++ .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5799999999999998765 4567778777 4555555555555555544443 1210
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCC--cc
Q 042609 265 ---PDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYA--IK 339 (540)
Q Consensus 265 ---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~ 339 (540)
.-...+-.+...+...|++++|.++|+.+...+ |+......+-..+.+. +++++|+..|+...... .+. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccHHH
Confidence 002334456667778888888888887766544 4443222222233333 77777777776433211 010 12
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPG--NAVFNSVISAYSKAGDMTPAMEMLKLMRSR 402 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (540)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455566666667777777777776653322132 223444455566666777777766666655
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=1.8e-05 Score=74.00 Aligned_cols=191 Identities=8% Similarity=0.005 Sum_probs=126.8
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+...+..+. +...|..+...|.+.|++++|+..|++..+.. +-+...+..+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL-----VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445556777889999999999999988765 88999999999999999999999999998764 557888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVK 320 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 320 (540)
++...|++++|...|++..+.+.. +...+...+....+ ..++.. +........ +........+..+. . |+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~-~~~~~i~~~l~~l~-~-~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRI-HQESELHSYLTRLI-A-AERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCC-CCCCHHHHHHHHHH-H-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHH-hhhHHHHHHHHHHH-H-HHHH
Confidence 999999999999999998765310 00011111111111 111111 122222232 33333333444444 2 8899
Q ss_pred HHHHHHHHhHhccCCCCc-ccHHHHHHHHHcC-CCHHHHHHHHHHHHHC
Q 042609 321 LALDMLDDFSGEARKYAI-KPFSSVIRSLCRM-KDVHGAKTLLSKMISE 367 (540)
Q Consensus 321 ~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 367 (540)
+|++.++...+. .|+. .....+-..+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988877654 3332 2233333344444 6688899999887653
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=1e-05 Score=75.71 Aligned_cols=99 Identities=11% Similarity=-0.107 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56788899999999999999999999998764 4478889999999999999999999999998764 356788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 042609 276 WFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~ 296 (540)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=2.4e-05 Score=63.18 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
+...+..+...+.+.|++++|...|++..+... .+...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 344555556666666666666666666655421 245556666666666666666666666666543 234556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 042609 452 GYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.|.+.|++++|.+.|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666666543
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=5.1e-06 Score=73.11 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=86.0
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----------------QETY 235 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----------------~~t~ 235 (540)
+++++|.+.|+.-.+...+ ....|..+...+...|++++|+..|++..+.. +.+ ...|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQ-----SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----CCCSGGGCCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 4555565555533332222 45678888888889999999999999887643 112 2677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
..+..++.+.|++++|...++..++.. +.+...+..+..+|...|++++|...|++..+..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 888888888899999999998888763 3567788888888889999999999988887754
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.16 E-value=1.3e-05 Score=66.16 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|+..++.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 55677778888889999999999999987764 4577888888888999999999999999988864 345677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|...|++++|...|+...+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999998877643
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.00021 Score=71.07 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH---HHHHHHHHHHHhCCchHHHHHHHHHHhHhc----cCCCC-cccH
Q 042609 271 GKIISWFCKGGKAKEAHVVYTLAREKK-MYPPQ---SVVAFLISSLCQEDETVKLALDMLDDFSGE----ARKYA-IKPF 341 (540)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~ 341 (540)
..|...|.+.|++++|.+.+..+...- ..++. ......+..+....|..+++..+++..... +..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 445555666666666665555544311 01111 122233444444446666666666654431 11111 2235
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHH
Q 042609 342 SSVIRSLCRMKDVHGAKTLLSKMISE--GP--PP-GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR----GLKPD--VYT 410 (540)
Q Consensus 342 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t 410 (540)
..+...|...|++++|..++++.... +. .+ ...++..++..|...|++++|..++++.... +..+. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 56667777777777777777766532 11 11 1345667777777777777777777665432 11111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~ 436 (540)
+..+...+...|++++|...|.+..+
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555566667777777777666543
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=7.4e-05 Score=59.98 Aligned_cols=97 Identities=14% Similarity=-0.005 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4567777777778888888888888776654 4467777777778888888888888888877764 2456677777788
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~ 295 (540)
|...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888877665
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.12 E-value=2.4e-05 Score=65.17 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCL 490 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 490 (540)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++...... -+...+..+-.+|.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~- 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL- 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH-
Confidence 3344444445555555555555544432 22444445555555555555555555555443321 12233333333333
Q ss_pred hCCCHHHHHHHHHHHHH
Q 042609 491 KALDWRTAEKLLEDMRL 507 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~ 507 (540)
..|++++|.+.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555555443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=8.1e-05 Score=58.36 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34566777777777777777777777776643 3466677777777777777777777777776653 235666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|...|++++|...|++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 7777788888877777776543
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.11 E-value=5.3e-05 Score=61.14 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETG--SLPD----SEKV 270 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~ 270 (540)
...|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456667777777777777777777776653 4456667777777777777777777777766542 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042609 271 GKIISWFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (540)
..+..++...|++++|.+.|++....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66777777788888888887776653
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.09 E-value=0.00017 Score=56.46 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...|++++|...|+......+. +...|..+...|...|++++|+..+++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 445556777889999999999999887765 78999999999999999999999999998764 456888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
++...|++++|.+.++...+.+. .+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 99999999999999999987642 3444444443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.09 E-value=9.3e-05 Score=59.38 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+.+.|++++|...|+...+..+. +...|..+...|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 445556778889999999999999988775 88999999999999999999999999998865 456889999999
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 042609 241 ALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~ 261 (540)
++...|++++|...|++.++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=7.1e-05 Score=60.39 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC----HHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYG--CVAN----QET 234 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g--~~p~----~~t 234 (540)
+..+...+.+.|++++|...|++..+..+. +..+|+.+...|...|++++|++.|++..+.+ ..++ ..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 445667788899999999999999998876 89999999999999999999999999987632 1122 246
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGK 272 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 272 (540)
|..+..++...|++++|.+.|++.+.. .||..+...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777888899999999999999998875 467655443
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.07 E-value=0.00012 Score=61.89 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
...+..+...|.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...+++.++.. +-+...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 33445555555555555555555555554421 144555555555555555555555555555543 2234555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~ 470 (540)
|...|++++|...|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 555555555555555554
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=6.5e-05 Score=58.36 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 042609 198 EILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLP--DSEKVGKIIS 275 (540)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~ 275 (540)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344444455555555555555555554432 2334445555555555555555555555555442 12 3444555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHc
Q 042609 276 WFCKG-GKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~-g~~~~A~~~~~~m~~~ 296 (540)
+|.+. |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.03 E-value=6.6e-05 Score=61.87 Aligned_cols=92 Identities=11% Similarity=-0.056 Sum_probs=81.9
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
+...+.+.|++++|...|+.+....+. +...|..+...|...|++++|+..|++..... +.+...+..+..++.
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHY-----DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344667889999999999999988776 89999999999999999999999999998865 557788889999999
Q ss_pred hCCChhHHHHHHHHHHHC
Q 042609 244 RRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~ 261 (540)
..|++++|...|+..++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998875
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=0.00013 Score=59.39 Aligned_cols=99 Identities=11% Similarity=-0.107 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++..++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 67889999999999999999999999987764 4567888889999999999999999999988864 346778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 042609 276 WFCKGGKAKEAHVVYTLAREK 296 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~ 296 (540)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999887754
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.02 E-value=7.1e-05 Score=58.10 Aligned_cols=92 Identities=11% Similarity=-0.081 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL--SPVTYHTLIRGYC 454 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~ 454 (540)
..+...+.+.|++++|...|++..+... .+...|..+...|...|++++|...+++..+.. +. +...+..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 3333444444444444444444433311 133344444444444444444444444444432 11 2344444444444
Q ss_pred hc-CCHHHHHHHHHHHH
Q 042609 455 KL-EEFDCALKLLNEMK 470 (540)
Q Consensus 455 ~~-g~~~~A~~~~~~m~ 470 (540)
+. |++++|.+.+++..
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TCSSCSHHHHHHHHHHG
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 44 44444444444444
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=5e-05 Score=60.90 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCC----HHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS--LPD----SEKVGK 272 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 272 (540)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444444444444444444444332 22344444444444444444444444444443311 111 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
+...|.+.|++++|...|+...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 45555555555555555555544
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.00026 Score=58.18 Aligned_cols=99 Identities=16% Similarity=0.021 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN----QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVG 271 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 271 (540)
+...|..+...+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+++.++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 67889999999999999999999999998764 66 6788888899999999999999999988763 34678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 272 KIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
.+..+|...|++++|...|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999988754
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.01 E-value=0.00015 Score=61.32 Aligned_cols=90 Identities=17% Similarity=0.001 Sum_probs=48.7
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRR 245 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (540)
..+...|++++|...|+...+..+. +...|..+...|...|++++|+..|++..+.. +-+...|..+..++...
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3444555555555555555555443 45555555555555555555555555555443 23455555555555555
Q ss_pred CChhHHHHHHHHHHHC
Q 042609 246 KIFDWAWSVCEKMIET 261 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~ 261 (540)
|++++|...|++.++.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 5555555555555443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=0.00019 Score=59.03 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPD----VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYH 447 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 447 (540)
+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555556666666666666666666554 334 4555555666666666666666666665542 22455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 448 TLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
.+...|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666543
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.99 E-value=0.00017 Score=58.62 Aligned_cols=96 Identities=16% Similarity=-0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 373 NAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRG 452 (540)
Q Consensus 373 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (540)
...+..+...+...|++++|...|+...+... .+...|..+..+|...|++++|...+++..+.. +.+...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 34444444455555555555555554444321 134444444444555555555555555444432 2234444444455
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042609 453 YCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~ 470 (540)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554444
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=7.1e-05 Score=65.66 Aligned_cols=130 Identities=9% Similarity=-0.096 Sum_probs=97.1
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT-----------VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQ 232 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~ 232 (540)
+...+...|++++|...|+...+..+....... ..+|..+...|...|++++|+..|++..+.. +.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 344567789999999999999887654211112 2789999999999999999999999998864 5678
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH-VVYTLARE 295 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 295 (540)
..+..+..++...|++++|...|++.++.. +.+..++..+..++...++.+++. ..|..+..
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998864 346777888888887777776666 44554443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.93 E-value=0.00021 Score=57.09 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGV--QPN----VDEYNK 483 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 483 (540)
.|..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554432 22444555555555555555555555555543210 111 334444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
+...+. +.|++++|.+.|++..+.
T Consensus 85 la~~~~-~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYF-KEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhccHHHHHHHHHHHHHh
Confidence 444443 555666666666655554
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=8.8e-05 Score=59.26 Aligned_cols=89 Identities=9% Similarity=-0.065 Sum_probs=56.5
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
.+.+.|++++|...|+...+..+. +...|..+...+...|++++|+..|++..+.. +-+...+..+..++.+.|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 445566666777777666666554 66666666666777777777777776666543 334556666666666666
Q ss_pred ChhHHHHHHHHHHHC
Q 042609 247 IFDWAWSVCEKMIET 261 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~ 261 (540)
++++|...+++.++.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666543
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00052 Score=68.11 Aligned_cols=205 Identities=11% Similarity=0.021 Sum_probs=105.3
Q ss_pred HHHHHhhcChhhHHHHHHHHHHhcccCCCCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC
Q 042609 165 LKAICSSVGKKEVYALWDIVKEIGEKEKGVLT------------VEILNELIALFSKLGKGKAAFEVFNKFGDY-GCVAN 231 (540)
Q Consensus 165 i~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~~p~ 231 (540)
.+.+.+.|++++|.+.|..+.+..+....... ..++..|...|...|++++|.+.+.++... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34455667777777777766665543222110 123556666666667777776666665431 10111
Q ss_pred HH----HHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042609 232 QE----TYYFTIEALSRRKIFDWAWSVCEKMIET----GSLP-DSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQ 302 (540)
Q Consensus 232 ~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 302 (540)
.. +.+.+-..+...|+++.|..++...... +..+ -..++..|...|...|++++|..+++++...-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--- 167 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK--- 167 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh---
Confidence 11 1122222223345556666555554331 1111 1334445555555555555555555543321000
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHH
Q 042609 303 SVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISE----GPPPG--NAVF 376 (540)
Q Consensus 303 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~ 376 (540)
. + ........|..++..|...|++++|..++++.... +.++. ...+
T Consensus 168 ------------~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 168 ------------L-D---------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp ------------S-S---------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ------------c-c---------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 0 0 00001234667777788888888888888776532 11111 2345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 042609 377 NSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 377 ~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
..+...+...|++++|...|.+..
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566666777888888887776654
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=3.6e-05 Score=77.40 Aligned_cols=143 Identities=11% Similarity=0.053 Sum_probs=94.4
Q ss_pred cChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---------------QETYY 236 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---------------~~t~~ 236 (540)
+++++|...|+...+..+. ....|+.+...|.+.|++++|+..|++..+.. +.+ ...|.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~-----~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE-----QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHH
Confidence 3444555555544433333 56678888888899999999999998887643 122 47777
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQED 316 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 316 (540)
.+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. |+.......+..+....
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence 88888888888888888888887764 3467778888888888888888888888877643 54433333333222222
Q ss_pred chHHHHH
Q 042609 317 ETVKLAL 323 (540)
Q Consensus 317 ~~~~~a~ 323 (540)
++.+++.
T Consensus 399 ~~~~~a~ 405 (457)
T 1kt0_A 399 KEHNERD 405 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.86 E-value=0.0062 Score=57.53 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHH
Q 042609 319 VKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMK--DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD-MTPAMEM 395 (540)
Q Consensus 319 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~ 395 (540)
+++++.+++.+.....+ +..+|+.-...+.+.+ .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56666666666654332 4455655555666666 3778888888887663 3467777766666667777 4778888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 042609 396 LKLMRSRGLKPDVYTYTGLMSGYANG--------------GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL----- 456 (540)
Q Consensus 396 ~~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 456 (540)
++.+.+.... |...|+.....+.+. +.++++++.+.+.+... +-|...|+-+--.+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 8887776544 666676665555443 45778888888887764 44667776554444444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHC
Q 042609 457 ------EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLC----LKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 457 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~g~~~~A~~l~~~m~~~ 508 (540)
+.++++++.++++.+. .|+. .|+.+-.++. ...|..+++...++++++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578899999998865 4554 3432221111 1356777888888888764
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.86 E-value=0.011 Score=55.87 Aligned_cols=131 Identities=11% Similarity=0.018 Sum_probs=95.3
Q ss_pred HhhcChh-hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHH
Q 042609 169 CSSVGKK-EVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK----------GKAAFEVFNKFGDYGCVANQETYYF 237 (540)
Q Consensus 169 ~~~~~~~-~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~g~~p~~~t~~~ 237 (540)
.+.|.+. +|..+++.+....++ +..+||.=-..+...+. +++++.+++.+.... +-+..+|+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3445554 688999999888776 77888866555544443 678888888887754 567788888
Q ss_pred HHHHHHhCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 042609 238 TIEALSRRK--IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK-AKEAHVVYTLAREKKMYPPQSVVAF 307 (540)
Q Consensus 238 ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ 307 (540)
-..++.+.+ .++++..+++.+.+.. +-|...|+.-.-++...|. ++++.+.++.+.+.+ .-+...|+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 777777777 4788888998888864 3567777777767777777 588888888888766 345556654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.85 E-value=0.00014 Score=58.13 Aligned_cols=97 Identities=10% Similarity=-0.135 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFC 278 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 278 (540)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+++.++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35566777888999999999999988764 4578888888889999999999999999988864 246778888888899
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 042609 279 KGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~~ 297 (540)
+.|++++|...|++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999998877643
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.83 E-value=0.00014 Score=60.57 Aligned_cols=130 Identities=14% Similarity=0.052 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 042609 376 FNSVISAYSKAGDMTPAMEMLKLMRSRGL-KPD----VYTYTGLMSGYANGGQMEEACEILNEAKKNHS-RLS----PVT 445 (540)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~ 445 (540)
+..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+... ..+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444444445555555555444332200 001 12444455555555555555555555443210 001 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDV----GVQPN-VDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
+..+...|...|++++|...+++..+. +-.+. ...+..+-..+. ..|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 555555666666666666666555421 11111 122333333333 5566666666666554
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.80 E-value=0.00055 Score=54.76 Aligned_cols=94 Identities=16% Similarity=0.072 Sum_probs=55.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQ---ETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD---SEKVGKIIS 275 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~ 275 (540)
.+...+...|++++|+..|++..+.. +.+. ..+..+..++.+.|++++|...++..++... .+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 34445556666666666666665532 1122 3555566666666666666666666665431 12 455566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042609 276 WFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+|.+.|++++|...|+.+.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6777777777777777666543
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.79 E-value=0.00025 Score=59.01 Aligned_cols=133 Identities=11% Similarity=-0.054 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC----CCC-CHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVL-TVEILNELIALFSKLGKGKAAFEVFNKFGDYG----CVA-NQETY 235 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g----~~p-~~~t~ 235 (540)
..+...+...|++++|...+++..+.....+... -..++..+...|...|++++|++.|++..+.. -.+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3444455667788888888877766544311100 12467777777888888888888887765421 111 13456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 236 YFTIEALSRRKIFDWAWSVCEKMIET----GSL-PDSEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
..+...+...|++++|...+++.++. +.. ....++..+...|...|++++|.+.+++..
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66667777777777777777766543 110 113345566666777777777777766654
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00085 Score=53.62 Aligned_cols=93 Identities=9% Similarity=-0.154 Sum_probs=78.5
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHH
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTV---EILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN---QETYYF 237 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~---~~t~~~ 237 (540)
+...+...|++++|...|+.+.+..+. +. ..+..+...|...|++++|+..|++..+.. +.+ ...+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 444667789999999999999887654 33 688889999999999999999999998764 233 677888
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC
Q 042609 238 TIEALSRRKIFDWAWSVCEKMIETG 262 (540)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~m~~~g 262 (540)
+..++...|++++|...|+.+++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999998863
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.73 E-value=7.6e-05 Score=75.44 Aligned_cols=116 Identities=9% Similarity=-0.018 Sum_probs=87.3
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF 248 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (540)
.+.|++++|.+.|++..+..+. +..+|+.+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 4568888999999988887665 78889999999999999999999999988764 45677888888888899999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 042609 249 DWAWSVCEKMIETGSLPDSEKVGKIISW--FCKGGKAKEAHVVYT 291 (540)
Q Consensus 249 ~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 291 (540)
++|.+.+++.++... .+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988877632 233344444444 777788888888877
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.0004 Score=69.78 Aligned_cols=128 Identities=17% Similarity=0.058 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLT---------------VEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
.+..+...+.+.+++++|...|++..+..+. + ..+|+.+..+|.+.|++++|+..|++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-----EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-----cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566777888999999999999999887664 4 6899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHV-VYTLAR 294 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 294 (540)
+.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+..++.+.|+.++|.+ .+..|.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 5578899999999999999999999999999864 2455678888888988888887764 444443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.71 E-value=0.00049 Score=66.92 Aligned_cols=120 Identities=13% Similarity=0.043 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHH----------------hcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKE----------------IGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~----------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
+..+...+.+.+++++|...|++..+ ..+. +..+|+.+...|.+.|++++|++.+++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-----ALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-----HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44556667777888888888887766 2222 45666777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 225 DYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH 287 (540)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 287 (540)
+.. +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++.+.++.+++.
T Consensus 301 ~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 301 EID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 643 3356666666667777777777777777666542 224455555555555555554443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.68 E-value=0.00011 Score=58.14 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=56.7
Q ss_pred hcChhhHHHHHHHHHHhc---ccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 042609 171 SVGKKEVYALWDIVKEIG---EKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI 247 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (540)
.|++++|...|++..+.+ +. +...|..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC
Confidence 356667777777776652 33 56677777777777777777777777776654 3456667777777777777
Q ss_pred hhHHHHHHHHHHHC
Q 042609 248 FDWAWSVCEKMIET 261 (540)
Q Consensus 248 ~~~a~~~~~~m~~~ 261 (540)
+++|...+++.++.
T Consensus 77 ~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 77 YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776654
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.65 E-value=0.00011 Score=58.27 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=44.8
Q ss_pred cCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 386 AGDMTPAMEMLKLMRSRGL--KPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 463 (540)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...|++..+.. +-+...+..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555566666655555421 1123445555555666666666666666665543 223555555666666666666666
Q ss_pred HHHHHHHH
Q 042609 464 KLLNEMKD 471 (540)
Q Consensus 464 ~~~~~m~~ 471 (540)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.64 E-value=0.001 Score=55.93 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 042609 444 VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~ 508 (540)
..|..+..+|.+.|++++|...+++.++.. +.+...|..+-.+|. ..|++++|.+.|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhc
Confidence 455566666666666666666666665432 123444555554444 566666666666666554
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.63 E-value=0.00079 Score=56.58 Aligned_cols=99 Identities=9% Similarity=-0.017 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccC------C-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKE------K-------GVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGC 228 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~------~-------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~ 228 (540)
......+.+.|++++|...|+...+..... . ...+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~- 93 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE- 93 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Confidence 344456677889999999988877761100 0 00145677778888888888888888888877654
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 229 VANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 229 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
+.+...|..+..++...|++++|...|+..++.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456677777777777888888888777777765
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.60 E-value=0.00016 Score=73.00 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=86.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQME 425 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 425 (540)
..+.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|+..+++..+... -+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34557788888888888887753 33577888888888899999999999988887743 26778888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 042609 426 EACEILNEAKKNHSRLSPVTYHTLIRG--YCKLEEFDCALKLLN 467 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 467 (540)
+|...+++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999998888753 1233444445444 778888888888887
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00068 Score=65.88 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDY---------------GCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
...|..+...|.+.|++++|++.|++..+. --+.+..+|..+..+|.+.|++++|...+++.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 456888899999999999999999998761 11234567888888999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 262 GSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 262 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
. +.+...+..+..+|...|++++|...|++..+..
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4 3467888889999999999999999999988755
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.58 E-value=0.0002 Score=68.83 Aligned_cols=149 Identities=10% Similarity=0.019 Sum_probs=83.4
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 338 IKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG 417 (540)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 417 (540)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455777778888899999999999988764 344321 222333333332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCCHH
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD-EYNKLIQSLCLKALDWR 496 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~g~~~ 496 (540)
|.+.|++++|...+++.++.. +-+...|..+..+|...|++++|...|++..+. .|+.. .+..+........+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988764 346788889999999999999999999988754 34433 33333333233456677
Q ss_pred HHHHHHHHHHHC
Q 042609 497 TAEKLLEDMRLK 508 (540)
Q Consensus 497 ~A~~l~~~m~~~ 508 (540)
++.++|.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888754
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.0004 Score=69.90 Aligned_cols=90 Identities=16% Similarity=-0.055 Sum_probs=44.0
Q ss_pred hhcChhhHHHHHHHHHHhcccCCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHHHHHHH
Q 042609 170 SSVGKKEVYALWDIVKEIGEKEKGV--LT-VEILNELIALFSKLGKGKAAFEVFNKFGD-----YG--CVANQETYYFTI 239 (540)
Q Consensus 170 ~~~~~~~A~~~f~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~g--~~p~~~t~~~ll 239 (540)
.+|++++|..++++..+...+--+. |+ ..+++.|...|...|++++|+.++++.++ .| .+-...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4456666666665555443321111 11 34556666666666666666665555432 11 111233455555
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 042609 240 EALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~ 259 (540)
..|...|++++|+.++++.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555443
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.52 E-value=0.003 Score=51.48 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHHHHC
Q 042609 422 GQMEEACEILNEAKKN 437 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~ 437 (540)
++.++|...|++..+.
T Consensus 75 ~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL 90 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcC
Confidence 3444444444444333
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.52 E-value=0.00059 Score=68.65 Aligned_cols=88 Identities=11% Similarity=-0.032 Sum_probs=61.0
Q ss_pred HHhcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----CC-CC-CHHHHHH
Q 042609 207 FSKLGKGKAAFEVFNKFGDY---GCVA----NQETYYFTIEALSRRKIFDWAWSVCEKMIET-----GS-LP-DSEKVGK 272 (540)
Q Consensus 207 ~~~~g~~~~A~~~f~~m~~~---g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~ 272 (540)
+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55678888888888776542 1112 3456788888888888888888888776543 21 12 2455778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 042609 273 IISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~ 294 (540)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888888888777654
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.0013 Score=53.67 Aligned_cols=113 Identities=13% Similarity=-0.028 Sum_probs=92.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 042609 387 GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK----LEEFDCA 462 (540)
Q Consensus 387 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A 462 (540)
+++++|.+.|++..+.| .|+.. |-..|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999988887 33444 6666777788899999999999986 77888889999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLK----ALDWRTAEKLLEDMRLKGLH 511 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~g~~~~A~~l~~~m~~~g~~ 511 (540)
.+.|++..+.| +...+..|-..|. . .+++++|.++|++..+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQY-AGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999875 5666766766665 5 68999999999999988753
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.44 E-value=0.00043 Score=66.42 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH------------------HHHHHHHHHHhCCChhHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQE------------------TYYFTIEALSRRKIFDWAWSVCEK 257 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~ 257 (540)
....|..+...+.+.|++++|+..|++..... |+.. .|..+..++.+.|++++|...+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567888888889999999999999987643 4433 444444455555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 258 MIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 258 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
.++.. +.+...+..+..+|...|++++|...|++..
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54432 1234444555555555555555555555443
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.34 E-value=0.0012 Score=54.77 Aligned_cols=96 Identities=15% Similarity=-0.029 Sum_probs=56.7
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCC--CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CCCC-
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKG--VLT-----VEILNELIALFSKLGKGKAAFEVFNKFGDY-----GCVA- 230 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~--~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g~~p- 230 (540)
....+.+.|++++|...|++..+..+.... ..+ ...|+.+..++.+.|++++|+..|++.++. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 344566779999999999988887664100 001 237777777777777777777777776653 0012
Q ss_pred CHHHH----HHHHHHHHhCCChhHHHHHHHHHH
Q 042609 231 NQETY----YFTIEALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 231 ~~~t~----~~ll~~~~~~~~~~~a~~~~~~m~ 259 (540)
+...| .....++...|++++|+..|++.+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 22334 444444444455555554444443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.34 E-value=0.0058 Score=50.65 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----CCC
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKN-----HSRLS-PVTY----HTLIRGYCKLEEFDCALKLLNEMKD-----VGV 474 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~-----~g~ 474 (540)
.|..+-.++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++ .|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666666653 11333 3455 6666777777777777777776652 345
Q ss_pred CCCHHHHHHHH
Q 042609 475 QPNVDEYNKLI 485 (540)
Q Consensus 475 ~p~~~~~~~ll 485 (540)
.+........+
T Consensus 139 ~~~~~~~~~~~ 149 (159)
T 2hr2_A 139 TPGKERMMEVA 149 (159)
T ss_dssp CTTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444333
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.0013 Score=51.45 Aligned_cols=79 Identities=10% Similarity=0.017 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 042609 176 EVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVC 255 (540)
Q Consensus 176 ~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 255 (540)
.|...|+...+..+. +...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|
T Consensus 3 ~a~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTD-----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555554443 56666666666666666666666666665543 334455555555555666666666655
Q ss_pred HHHHH
Q 042609 256 EKMIE 260 (540)
Q Consensus 256 ~~m~~ 260 (540)
++.++
T Consensus 77 ~~al~ 81 (115)
T 2kat_A 77 ESGLA 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.26 E-value=0.023 Score=58.38 Aligned_cols=171 Identities=11% Similarity=0.019 Sum_probs=126.5
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGK----------GKAAFEVFNKFGDYGCVANQETYYFTIEALS 243 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~ 243 (540)
.++|.+.++.+.+..++ +..+|+.--..+.+.|+ ++++++.++++.+.. +-+..+|+.-..++.
T Consensus 45 ~eeal~~~~~~l~~nP~-----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35689999999998887 88899988877777777 899999999998865 668889999888888
Q ss_pred hCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----
Q 042609 244 RRK--IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG-KAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQE----- 315 (540)
Q Consensus 244 ~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----- 315 (540)
+.+ +++++.+.++++++.. .-+..+|+.-..++.+.| .++++.+.++++.+.+ .-+...|+..-..+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccc
Confidence 999 6799999999999875 367888888877888888 8899999999888765 34566666544333321
Q ss_pred --------CchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC
Q 042609 316 --------DETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD 353 (540)
Q Consensus 316 --------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 353 (540)
.+.++++++.+++...... -+...|...-..+.+.+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 1456666666666655432 244455555555555444
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0013 Score=50.72 Aligned_cols=90 Identities=16% Similarity=0.056 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-------HH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPD-------SE 268 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~ 268 (540)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|...+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 45667777778888888888888888877653 4467777777778888888888888888877653 33 34
Q ss_pred HHHHHHHHHHhcCCHHHHHH
Q 042609 269 KVGKIISWFCKGGKAKEAHV 288 (540)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~ 288 (540)
.+..+..++...|+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 44445555555554444433
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.19 E-value=0.012 Score=60.50 Aligned_cols=136 Identities=10% Similarity=-0.020 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAG--DMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG-QMEEACEI 430 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~ 430 (540)
+++++..++.+.+.. +.+..+|+.-.-.+.+.| +++++++.++++.+...+ |...|+.--..+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 566666666666543 235556665555566666 457777777777666443 5666666655666666 66777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC
Q 042609 431 LNEAKKNHSRLSPVTYHTLIRGYCKL--------------EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALD 494 (540)
Q Consensus 431 ~~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~ 494 (540)
+.++++.. .-|...|+.....+.+. +.++++++.+++...... -|...|+.+- .+..+.++
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~-~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHR-WLLGRAEP 241 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHH-HHHSCCCC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHH-HHHhcCCC
Confidence 77766654 23556666655555442 456788888877775421 2444454444 33335544
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.11 E-value=0.0052 Score=45.24 Aligned_cols=82 Identities=21% Similarity=0.159 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIIS 275 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 275 (540)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567777777778888888888887776653 3456677777777777777777777777776653 234555555555
Q ss_pred HHHh
Q 042609 276 WFCK 279 (540)
Q Consensus 276 ~~~~ 279 (540)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.10 E-value=0.0042 Score=48.46 Aligned_cols=62 Identities=24% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 443 PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
...|..+...|...|++++|...|++..+.. +.+...|..+-..|. ..|++++|.+.|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQ-GQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444321 112233333333332 3444444444444443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.09 E-value=0.0017 Score=53.77 Aligned_cols=87 Identities=10% Similarity=0.005 Sum_probs=61.4
Q ss_pred HhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChH----------HHHHHHHHHhhCCCCCCHHHHHHH
Q 042609 169 CSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGK----------AAFEVFNKFGDYGCVANQETYYFT 238 (540)
Q Consensus 169 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~f~~m~~~g~~p~~~t~~~l 238 (540)
.+.+.+++|.+.++...+..+. +...|+.+..++...++++ +|+..|++.++.. +-+..+|..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3446678899999999888876 8999999999988887754 7777777776654 3355667777
Q ss_pred HHHHHhCC-----------ChhHHHHHHHHHHHC
Q 042609 239 IEALSRRK-----------IFDWAWSVCEKMIET 261 (540)
Q Consensus 239 l~~~~~~~-----------~~~~a~~~~~~m~~~ 261 (540)
..+|...| ++++|.+.|++.++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 77776553 455555555555543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.05 E-value=0.0054 Score=45.12 Aligned_cols=78 Identities=18% Similarity=0.083 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 042609 161 VDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIE 240 (540)
Q Consensus 161 ~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~ 240 (540)
+..+...+...+++++|...|+...+..+. +...|..+...|...|++++|+..|++..+.. +.+...+..+..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 344555677889999999999999887765 78899999999999999999999999998764 345666666665
Q ss_pred HHHh
Q 042609 241 ALSR 244 (540)
Q Consensus 241 ~~~~ 244 (540)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0029 Score=48.74 Aligned_cols=89 Identities=10% Similarity=-0.045 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-------H
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN-------Q 232 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~-------~ 232 (540)
.+..+...+...|++++|...|+...+..+. +...|..+...|...|++++|++.|++..+.. |+ .
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 3445566778889999999999999988775 88999999999999999999999999998764 44 4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHH
Q 042609 233 ETYYFTIEALSRRKIFDWAWSVC 255 (540)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~ 255 (540)
..+..+..++...|+++.|...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHH
Confidence 55555666666666555554433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.78 E-value=0.0054 Score=50.74 Aligned_cols=98 Identities=10% Similarity=-0.069 Sum_probs=74.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 208 SKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIF----------DWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~----------~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
.+.+.+++|++.+++..+.. +.+...|..+-.++...+++ ++|+..|++.++.. +-+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45567899999999998765 56888888888888887764 59999999998874 24677888899999
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042609 278 CKGG-----------KAKEAHVVYTLAREKKMYPPQSVVAFLI 309 (540)
Q Consensus 278 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 309 (540)
...| ++++|.+.|++..+.+ |+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 8764 7888888888877754 6655554433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.74 E-value=0.0074 Score=45.81 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 260 (540)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777777777777776654 33456677777777777777777777776654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.52 E-value=0.014 Score=44.27 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 408 VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 408 ~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
...+..+...|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555555555442 1233445555555555555555555555443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.33 E-value=0.12 Score=49.19 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCCh-HHHH---HHHHHHhh-CCCCCCHHHHHHHHHHHHh
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSK----LGKG-KAAF---EVFNKFGD-YGCVANQETYYFTIEALSR 244 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~-~~A~---~~f~~m~~-~g~~p~~~t~~~ll~~~~~ 244 (540)
..+|..+|++..+..+. ....|..+.-+|.. .+.. .... ..++.... ...+.+..+|..+...+..
T Consensus 215 ~~~A~~l~e~Al~lDP~-----~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPE-----FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 46799999999988775 56666665555531 1111 1111 11111111 1125677777777766766
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042609 245 RKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFL 308 (540)
Q Consensus 245 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 308 (540)
.|++++|...+++.+..+ |+...|..+...+.-.|+.++|...|++....+ |...+|...
T Consensus 290 ~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~~ 349 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYWI 349 (372)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHHH
Confidence 788999998888888875 777777777888888899999988888887765 666665543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.15 E-value=0.014 Score=43.80 Aligned_cols=56 Identities=7% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVE-ILNELIALFSKLGKGKAAFEVFNKFGDYG 227 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~g 227 (540)
.+...|++++|...|+.+.+..+. +.. .|..+...|...|++++|++.|++..+..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445667788888888877776654 666 77777888888888888888888877654
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.13 E-value=0.013 Score=57.89 Aligned_cols=87 Identities=8% Similarity=-0.052 Sum_probs=64.3
Q ss_pred hcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 042609 209 KLGKGKAAFEVFNKFGDY---GCVA----NQETYYFTIEALSRRKIFDWAWSVCEKMIET-----GS-LPD-SEKVGKII 274 (540)
Q Consensus 209 ~~g~~~~A~~~f~~m~~~---g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~li 274 (540)
..|++++|+.++++.++. -+.| ...+++.+..+|...|++++|..++++.++. |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999998887541 1222 2467888899999999999999998887653 31 232 45688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042609 275 SWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~ 295 (540)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999988887653
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.11 E-value=0.02 Score=56.56 Aligned_cols=90 Identities=8% Similarity=-0.020 Sum_probs=71.0
Q ss_pred hcChhhHHHHHHHHHHhcccCCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHHHHHHHH
Q 042609 171 SVGKKEVYALWDIVKEIGEKEKGV--LT-VEILNELIALFSKLGKGKAAFEVFNKFGD-----YG--CVANQETYYFTIE 240 (540)
Q Consensus 171 ~~~~~~A~~~f~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~g--~~p~~~t~~~ll~ 240 (540)
.|++++|..++++..+...+--+. |+ ..+++.|...|...|++++|+.++++.++ .| .+-...+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 478899999999887765442221 33 46899999999999999999999999854 23 1223567999999
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 042609 241 ALSRRKIFDWAWSVCEKMIE 260 (540)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~ 260 (540)
.|...|++++|+.++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.06 E-value=0.25 Score=53.02 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=9.8
Q ss_pred HHHHHHHHhCCChhHHHHHH
Q 042609 236 YFTIEALSRRKIFDWAWSVC 255 (540)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~ 255 (540)
..++..+.+.|..+.|.++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHHHhCCChHHheecC
Confidence 44444555555555554433
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.04 E-value=0.04 Score=54.40 Aligned_cols=91 Identities=18% Similarity=0.042 Sum_probs=52.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRG---LKP----DVYTYTGLMSGYANGGQMEEACEILNEAKKN-----H-SRLS-PVT 445 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~ 445 (540)
+..+.+.|++++|+.++++..+.. +.| ...+++.|...|...|++++|..+++++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344555666777777666665431 111 1345666666666667777776666665542 1 1122 245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666777777777666666554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.94 E-value=0.028 Score=55.43 Aligned_cols=94 Identities=14% Similarity=0.017 Sum_probs=72.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCC-H
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYG---CVA----NQETYYFTIEALSRRKIFDWAWSVCEKMIET-----G-SLPD-S 267 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g---~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~ 267 (540)
..+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++.+.. | ..|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33566778899999999999986531 223 3567889999999999999999999988653 2 1222 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 268 EKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5688999999999999999999988764
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.82 E-value=0.12 Score=55.68 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=65.7
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042609 162 DALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEA 241 (540)
Q Consensus 162 ~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~ 241 (540)
..++..+.+.|..++|.++.+ +.. .-.......|++++|+++.+.+ .+...|..+...
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-------------~~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~ 690 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-------------DQD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-------------CHH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC-------------Ccc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHH
Confidence 444555555666666665442 111 1133445678888888886543 466788888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+....
T Consensus 691 al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887643 34555566667777766655544443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.80 E-value=0.22 Score=47.28 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042609 406 PDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEY 481 (540)
Q Consensus 406 p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 481 (540)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 345555555555555566666666666666553 55555555555566666666666666655543 3444443
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.67 Score=38.80 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=87.5
Q ss_pred HHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 042609 167 AICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRK 246 (540)
Q Consensus 167 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (540)
...+.|+++.|.++-+.+ . +...|..|.......|+++-|.+.|.+..+ |..+.-.|.-.|
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----N-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTG 74 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh-----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhC
Confidence 456778999998886654 1 678999999999999999999999998765 445555666677
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHH
Q 042609 247 IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDML 326 (540)
Q Consensus 247 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 326 (540)
+.+...++-+.....|- ++.....+.-.|+++++.++|.+. |-.| -..++ .+..|..+.|.++.
T Consensus 75 ~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~----eA~~~---A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP----LAYAV---AKANGDEAAASAFL 138 (177)
T ss_dssp CHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH----HHHHH---HHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH----HHHHH---HHHcCcHHHHHHHH
Confidence 77776666555555542 455666777789999998888652 2111 11111 12236677777777
Q ss_pred HHh
Q 042609 327 DDF 329 (540)
Q Consensus 327 ~~m 329 (540)
+++
T Consensus 139 ~~~ 141 (177)
T 3mkq_B 139 EQA 141 (177)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.67 E-value=0.19 Score=40.95 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHHhCCCHHHH
Q 042609 424 MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLE---EFDCALKLLNEMKDVGVQP-N-VDEYNKLIQSLCLKALDWRTA 498 (540)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p-~-~~~~~~ll~~~~~~~g~~~~A 498 (540)
+..+.+-|.+..+.|. ++..+.-.+..++++.+ +++++..++++..+.+ .| + ...+-.+--++. +.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~-kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNY-RLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH-HTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHH-HccCHHHH
Confidence 4455566666555553 56666666677777766 5557777777776543 23 1 222222222444 67777777
Q ss_pred HHHHHHHHHCCCCCcH-HHHHHHHHH
Q 042609 499 EKLLEDMRLKGLHLNG-ITRALIRAV 523 (540)
Q Consensus 499 ~~l~~~m~~~g~~p~~-~t~~ll~a~ 523 (540)
.++++.+++. .|+. ....+.+.+
T Consensus 91 ~~y~~~lL~i--eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 7777777764 4543 333554444
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.41 E-value=0.072 Score=39.70 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 204 IALFSKLGKGKAAFEVFNKFGDYGCVANQE-TYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
...+...|++++|+..|++..+.. +.+.. .+..+..++...|++++|...|++.++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556667777777776666543 33445 5666666666666666666666666654
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.40 E-value=0.21 Score=37.11 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 042609 442 SPVTYHTLIRGYCKLEE---FDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKG 509 (540)
Q Consensus 442 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g 509 (540)
|+..+..+..++...++ .++|..++++.++. .|+...-..++.....+.|++++|+..|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444444444433322 45555555555543 23333333333222235555555555555555443
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.32 E-value=0.8 Score=36.14 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (540)
..+...+......|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33445556666677777777777765443 3566777777777777777777777777777766653
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.80 E-value=0.32 Score=39.63 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGG---QMEEACEILNEAKKNHSRL--SPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 463 (540)
+..+.+-|.+....|. ++..+...+-.++++.+ +++++..+++...+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666666666554 67888888888888877 6678999999888864 24 3556667778889999999999
Q ss_pred HHHHHHHHCCCCCCHHHH
Q 042609 464 KLLNEMKDVGVQPNVDEY 481 (540)
Q Consensus 464 ~~~~~m~~~g~~p~~~~~ 481 (540)
+.++.+++. .|+..--
T Consensus 92 ~y~~~lL~i--eP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQA 107 (152)
T ss_dssp HHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHhc--CCCCHHH
Confidence 999998875 5654433
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.72 E-value=0.2 Score=37.21 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 174 KKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 174 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
.++|..+|++..+..++ ++..+..+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-----NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666666665554 5666666666666666666666666666554
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.64 E-value=1.3 Score=35.01 Aligned_cols=139 Identities=12% Similarity=0.113 Sum_probs=82.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHH
Q 042609 278 CKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGA 357 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 357 (540)
.-.|.+++..++..+.... .+..-+|++|-..... -+-+-..+.++.. |.-.|. ..+|++..+
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~-a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLES-IDCRYMFQVLDKI---GSYFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHH-CCHHHHHHHHHHH---GGGSCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchh-hchhHHHHHHHHH---hhhcCc----------HhhhcHHHH
Confidence 3456677777776666542 2355566665554443 3344444444332 222332 234555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 358 KTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKN 437 (540)
Q Consensus 358 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~ 437 (540)
...+-.+ ..+.......++.+...|+-++-.+++..+.. +..|+....-.+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5544443 23445566667777778888887777777533 23567777777778888888888888888887777
Q ss_pred CC
Q 042609 438 HS 439 (540)
Q Consensus 438 g~ 439 (540)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.59 E-value=0.28 Score=37.15 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 042609 160 VVDALLKAICSSVGKKEVYALWDIVKEIGEKE--KGVLTVEILNELIALFSKLGKGKAAFEVFNKFGDY 226 (540)
Q Consensus 160 ~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 226 (540)
.+-.+...+...+++..|...|+...+....+ .+.....++..|..+|.+.|++++|+..+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33445555556666666666666555443221 12234556666666666666666666666666553
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.45 E-value=1.9 Score=36.09 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=40.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042609 208 SKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAH 287 (540)
Q Consensus 208 ~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 287 (540)
...|+++.|.++.+.+ -+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3566666666665554 3455666666666666666666666665432 233444455556555555
Q ss_pred HHHHHHHH
Q 042609 288 VVYTLARE 295 (540)
Q Consensus 288 ~~~~~m~~ 295 (540)
++-+....
T Consensus 81 kla~iA~~ 88 (177)
T 3mkq_B 81 KMQNIAQT 88 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.02 E-value=0.42 Score=43.59 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 042609 409 YTYTGLMSGYAN-----GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL-EEFDCALKLLNEMKDVGV 474 (540)
Q Consensus 409 ~t~~~ll~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~ 474 (540)
..|..|...|.+ -|+.++|.+.|++.++....-+..++....+.++.. |+.+++.+.+++.+....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 345555555555 255555555555555542111244444445555442 555555555555554433
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.59 E-value=1.1 Score=35.10 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCCHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDC---ALKLLNEMKDVGVQP-NVDEYNKLIQSLCLKALDWR 496 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~g~~~ 496 (540)
...+..+.+-|.+....| .++..+--.+..++++..+... ++.++++..+.+ .| ...-+...+..-+-+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555555555544 2566666666666666665544 777777766543 12 23333333332223777888
Q ss_pred HHHHHHHHHHHC
Q 042609 497 TAEKLLEDMRLK 508 (540)
Q Consensus 497 ~A~~l~~~m~~~ 508 (540)
+|.++++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887775
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.38 E-value=0.76 Score=41.87 Aligned_cols=110 Identities=10% Similarity=-0.031 Sum_probs=81.3
Q ss_pred CHHHHHHHHHH-HHhc--CC------hHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhC-----CChhHHHHHHHHH
Q 042609 196 TVEILNELIAL-FSKL--GK------GKAAFEVFNKFGDYGCVAN---QETYYFTIEALSRR-----KIFDWAWSVCEKM 258 (540)
Q Consensus 196 ~~~~~~~li~~-~~~~--g~------~~~A~~~f~~m~~~g~~p~---~~t~~~ll~~~~~~-----~~~~~a~~~~~~m 258 (540)
....|..++.+ +... |. ...|..++++..+.. |+ -..|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 45567777653 3432 33 457777788877753 65 56788888889885 9999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 042609 259 IETGSLPDSEKVGKIISWFCKG-GKAKEAHVVYTLAREKKMY--PPQSVVAF 307 (540)
Q Consensus 259 ~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~--p~~~~~~~ 307 (540)
++.+..-+..++....+.++.. |+.++|.+.+++....... |+....+.
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9875433477888888888884 9999999999999987755 66554443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.23 E-value=1.4 Score=33.10 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNH------SRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
-+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|++++|...+++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444555555555555555444320 012234444444555555555555555554443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.41 E-value=1.6 Score=35.25 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 422 GQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQS 487 (540)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 487 (540)
+++++|.++|+.++..+-+. ...|......-.+.|++.+|.+++...+..+.. +...+...|+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 56666777776665542222 566666666666677777777777776665544 34444444444
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.96 E-value=1.3 Score=35.76 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042609 355 HGAKTLLSKMISEGPPPGNA-VFNSVIS------AYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEA 427 (540)
Q Consensus 355 ~~a~~~~~~m~~~g~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 427 (540)
++..++|++.... ++|+.. .|..-|. .+...+++++|.++|+.+...+-.- ...|-...+--.+.|++.+|
T Consensus 36 ~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kA 113 (161)
T 4h7y_A 36 NKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKS 113 (161)
T ss_dssp HHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHH
Confidence 5666677766654 444421 1111111 1223478999999999987653333 66676666667789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 428 CEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
.+++...+..+.+|. ....+.++
T Consensus 114 RkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 114 KQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred HHHHHHHhccCCCcH-HHHHHHHH
Confidence 999999999875543 33444443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.82 E-value=1.5 Score=45.98 Aligned_cols=127 Identities=20% Similarity=0.151 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCC-CHHH--
Q 042609 342 SSVIRSLCRMKD-VHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD-MTPAMEMLKLMRSR------GLKP-DVYT-- 410 (540)
Q Consensus 342 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-~~~t-- 410 (540)
..++..+...+. .+.|..+|+++.+....-+......+|..+.+.+. --+|.+++.+..+. ...+ +...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 57899999998875322222222333443333332 22355555443321 1111 1111
Q ss_pred -H---HHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 411 -Y---TGLM----SGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEM 469 (540)
Q Consensus 411 -~---~~ll----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (540)
. ..|+ .-|...|+++.|+.+-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0 1122 23557899999999999988763 345689999999999999999999999887
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.62 E-value=1.1 Score=35.03 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=63.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCH
Q 042609 385 KAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEE---ACEILNEAKKNHSRL--SPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~ 459 (540)
....+..+.+-|.+....|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33445556666666655444 677777777778887776554 889999888864 23 335556677888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH
Q 042609 460 DCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~~p~~~ 479 (540)
++|.+.++.+++. .|+..
T Consensus 91 ~~A~~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 91 EKALKYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHh--CCCCH
Confidence 9999999999865 46443
No 236
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.04 E-value=11 Score=42.27 Aligned_cols=182 Identities=9% Similarity=0.016 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-----------------------CCH
Q 042609 317 ETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPP-----------------------PGN 373 (540)
Q Consensus 317 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------------------p~~ 373 (540)
+..+.+.++...... +....-.+..+|...|++++|.+.|++... |+. .-.
T Consensus 826 ~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHH
Confidence 555555554433221 222223445556677777777777765421 110 011
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-C-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 374 AVFNSVISAYSKAGDMTPAMEMLKLMRSRGL-K-PD--VYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTL 449 (540)
Q Consensus 374 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~--~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (540)
.=|..++..+.+.|.++.+.++-....+..- . ++ ...|..+.+++...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 2367778888888888888887766554321 1 11 12578888888888999988888887776543 34566677
Q ss_pred HHHHHhcCCHH------------HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHhCCCHHHHHH-HHHHHH
Q 042609 450 IRGYCKLEEFD------------CALKLLNEMKDVG-VQPNVDEYNKLIQSLCLKALDWRTAEK-LLEDMR 506 (540)
Q Consensus 450 i~~~~~~g~~~------------~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~g~~~~A~~-l~~~m~ 506 (540)
+...|..|..+ +..+++..-.+.. ..-+...|..++.++....|++.+|-. +|+...
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 77666666544 4444443222110 001112466666676666677776655 455544
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.89 E-value=1.8 Score=41.72 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMK-----DVGVQPNVDEY 481 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 481 (540)
...++..+...|+.++|...+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+. +.|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445566667777777777777766653 4566777777777777777777777777654 34777766543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.79 E-value=2.1 Score=44.89 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=43.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 346 RSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
+-|...|+++.|+.+-++.... .+-+-.+|-.|..+|.+.|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455689999999999998875 3446779999999999999999999888876
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.67 E-value=1.9 Score=41.62 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=36.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE-----KKMYPPQSV 304 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 304 (540)
.++.++...|+++++...+..+.... +-+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34445555566666655555554432 23555555666666666666666665555432 355555544
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.55 E-value=19 Score=35.23 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHH
Q 042609 378 SVISAYSKAGDMTPAMEMLKLMRSR--GLKPD---VYTYTGLMSGYANGGQMEEACEILNEAKK----NHSRLSP--VTY 446 (540)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~ 446 (540)
.|...|...|++.+|.+++..+... |.... ...+...++.|...+++.+|..++.++.. ....|+. ..|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3444455555555555555554322 21111 12334444445555555555555554421 1111111 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 447 HTLIRGYCKLEEFDCALKLLNEMK 470 (540)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~ 470 (540)
...+..+...+++.+|.+.|.+..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444455555555555544443
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.16 E-value=2.5 Score=31.31 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 042609 214 KAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET 261 (540)
Q Consensus 214 ~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 261 (540)
-+..+-++.+...++.|++......+++|-+.+++..|.++++-++..
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355556666666667777777777777777777777777777766543
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.06 E-value=22 Score=34.08 Aligned_cols=170 Identities=13% Similarity=0.055 Sum_probs=91.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHH-
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISEGPPP-----GNAVFNSVISAYSKAGDMTPAMEMLKLMRSR--GLKPDVYTYTGL- 414 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l- 414 (540)
-++..|...|++.+|..++.++.+.--.. -...|..-+..|...+++.++...+...... .+.++...-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 46777778888888877777776431111 1234566677788888888888888766433 222333332222
Q ss_pred -H--HHHH-hcCCHHHHHHHHHHHHHC--CC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 042609 415 -M--SGYA-NGGQMEEACEILNEAKKN--HS-RL---SPVTYHTLIRGYCKLEEFDCALKLLN-EMKDVGVQPNVDEYNK 483 (540)
Q Consensus 415 -l--~~~~-~~g~~~~A~~~~~~m~~~--g~-~p---~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~ 483 (540)
. -.+. ..+++.+|...|-+..+. .. .| +...|..|.... . ++..+...++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-L-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-T-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-c-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 1 1244 678888888877766431 00 11 122333332222 2 22222222221 2111113466677777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH
Q 042609 484 LIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR 517 (540)
Q Consensus 484 ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 517 (540)
++.+| +.+++.+..++++.... .+..|....
T Consensus 262 L~~a~--~~~dl~~f~~iL~~~~~-~l~~D~~l~ 292 (394)
T 3txn_A 262 VAEAS--HKRSLADFQAALKEYKK-ELAEDVIVQ 292 (394)
T ss_dssp HHHHH--HTTCHHHHHHHHHHSTT-TTTTSHHHH
T ss_pred HHHHH--HhCCHHHHHHHHHHHHH-HHhcChHHH
Confidence 77775 56788877777776543 355565543
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.04 E-value=19 Score=40.30 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKF 223 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m 223 (540)
+...--.+...|...|++++|.+.|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444344455566666777776666554
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.67 E-value=7.5 Score=28.82 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
+.-+..+-++.+......|+.....+.+.+|.+.+++..|.++|+-++.+ +.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 55566666666666777777777777777777777777777777777643 2222345665554
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.52 E-value=26 Score=34.33 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=32.5
Q ss_pred cChhhHHHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042609 172 VGKKEVYALWDIVKEIGEKEK-GVLTVEILNELIALFSKLGKGKAAFEVFNKF 223 (540)
Q Consensus 172 ~~~~~A~~~f~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 223 (540)
++++.|.+.+-.+.+..+... ..-+......++..|...|+++...+.+.-+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L 82 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL 82 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 666667765555554333222 2234667777888888888888777766655
No 246
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.55 E-value=21 Score=30.34 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 421 GGQMEEACEILNEAKKNHSRL-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
.+...++.++|..|..+|+-- -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444667777777777766533 34566777777777788888888887777776666
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.93 E-value=37 Score=32.49 Aligned_cols=130 Identities=11% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHHHH------H
Q 042609 164 LLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNELIALFSKL-GKGKAAFEVFNKFGDYGCVANQETY------Y 236 (540)
Q Consensus 164 li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~m~~~g~~p~~~t~------~ 236 (540)
|...+.+.++.++...++......-..-........-..||..+... +..+.-+++..+..+.. .-...+| .
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34455666665555555544333222111111344555666666553 33333344444433211 0111122 1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 237 FTIEALSRRKIFDWAWSVCEKMIETGSLPD-----SEKVGKIISWFCKGGKAKEAHVVYTLAR 294 (540)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (540)
-+...|...|++.+|..++..+.+.--..| ..+|..-+.+|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 356677777777777777776655311111 2335555666777777777777776654
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.88 E-value=13 Score=29.19 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 318 TVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVIS 381 (540)
Q Consensus 318 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 381 (540)
+.-+..+-++.+......|+.....+.+.+|.+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45555666666666677777777777777777777777777777777644 2233445665554
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.55 E-value=62 Score=34.85 Aligned_cols=257 Identities=8% Similarity=0.008 Sum_probs=136.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH-HHHHHH
Q 042609 242 LSRRKIFDWAWSVCEKMIETGSLPDSE--KVGKIISWFCKGGKAKEAHVVYTLAREKKM--YPP----QSVVA-FLISSL 312 (540)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~-~ll~~~ 312 (540)
....|+.+++..++...+..+-..+.. .-..+.-+...+|..+++..++.......- .-+ ..... .+=-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777766666544321112322 233444456666766677776666554321 111 11111 121222
Q ss_pred HhCCchHHHHHHHHHHhHhccCCCCcccHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCC
Q 042609 313 CQEDETVKLALDMLDDFSGEARKYAIKPFS--SVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISA--YSKAGD 388 (540)
Q Consensus 313 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~ 388 (540)
...+-.-+++.+.+..+....-. ...... ++...+.-.|+.+....++..+.+.. +..+...+.-+ +...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 22211224555555555543211 011122 22333446678787888888776532 33333334444 446789
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042609 389 MTPAMEMLKLMRSRGLKPDVYTYT---GLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKL 465 (540)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 465 (540)
.+.+..+.+.+... ..| ..-|. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999999988865 122 23333 23346778889888888999988753 22333334444455567777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 042609 466 LNEMKDVGVQPNVDEYNKLIQSLCLKALD-WRTAEKLLEDMRL 507 (540)
Q Consensus 466 ~~~m~~~g~~p~~~~~~~ll~~~~~~~g~-~~~A~~l~~~m~~ 507 (540)
++.+.+.+ .|...--..+.-|.. ..|. -.+|..++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli-~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIA-CAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHH-TSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHcc
Confidence 77666543 444443333433433 2322 2678888888864
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.25 E-value=8.9 Score=30.14 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 215 AAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKII 274 (540)
Q Consensus 215 ~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 274 (540)
+..+-++.+...++.|+.......+++|-+.+++..|.++++-++.. ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 45566667777778888888888888888888888888888877654 223344555444
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.01 E-value=19 Score=28.35 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=8.6
Q ss_pred hCCCHHHHHHHHHHHHH
Q 042609 491 KALDWRTAEKLLEDMRL 507 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~ 507 (540)
+.|++++|.++.+.+.+
T Consensus 90 klgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 90 KLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHTCHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 44455555555555544
No 252
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=76.40 E-value=0.0077 Score=58.63 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042609 197 VEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISW 276 (540)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 276 (540)
+.+|..|..++...+++.+|++.|-+. -|...|..+|.++.+.|.+++-.+.+....+.. .+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 356777777777777777776665332 244456667777777777777766666555542 233334466777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHh--------------------ccCCC
Q 042609 277 FCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSG--------------------EARKY 336 (540)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~--------------------~~~~~ 336 (540)
|++.+++.+.++++. .|+..-....=.-++.. |.++.|.-+|..+.. ....-
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e-~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE-KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHS-CCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHc-cCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777776665544332 12222222222222232 444444444333211 11234
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 337 AIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
+..||-.+-.+|...+.+.-|.-.--.+.- .+| ....++.-|-..|.+++.+.+++.-... -+...-.|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 677899999999999988877666555542 222 1234677788899999988888876632 2357778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCC-------CHHHHHHHHHHHHhcCCHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKK-NHSRL-------SPVTYHTLIRGYCKLEEFDCAL 463 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~-~g~~p-------~~~~~~~li~~~~~~g~~~~A~ 463 (540)
.|++-. .++..+-++..-. .++ | ....|.-++-.|++-.+++.|.
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNi-pKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNI-PKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCC-TTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHHhccH-HHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 888753 2332222222111 111 1 2245677777777777777554
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.02 E-value=17 Score=26.83 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTYHTLI--RGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~ 500 (540)
..++|..+-+-+...+ + .-...|| ..+...|++++|..+.+.+. .||...|-+|-.. +.|..+++..
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~---rlGl~s~le~ 90 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY---RLGLGSALES 90 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH---HHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH---hcccHHHHHH
Confidence 4566666666666554 2 2222333 34566777777777665544 5777777666543 5666666666
Q ss_pred HHHHHHHCC
Q 042609 501 LLEDMRLKG 509 (540)
Q Consensus 501 l~~~m~~~g 509 (540)
-+.+|...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 666666555
No 254
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.07 E-value=34 Score=32.23 Aligned_cols=64 Identities=11% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCC
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGD--MTPAMEMLKLMRSRGLK 405 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 405 (540)
...++.-|...|+.++|.+.++++....+. ...+..++..++-+.++ .+.+..++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 455666666666666666666666421111 12233344444443322 23455555555555443
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.77 E-value=17 Score=26.79 Aligned_cols=83 Identities=13% Similarity=-0.002 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHH
Q 042609 423 QMEEACEILNEAKKNHSRLSPVTYHTLI--RGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500 (540)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~ 500 (540)
..++|..+-+-+...+ + .-...|| ..+...|++++|..+.+.+. .||...|-+|-.. +.|..+++..
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~---rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW---HLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH---HTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH---hcccHHHHHH
Confidence 4566666666666654 2 2222333 34567777777777665543 6777777766543 6677677766
Q ss_pred HHHHHHHCCCCCcHHHH
Q 042609 501 LLEDMRLKGLHLNGITR 517 (540)
Q Consensus 501 l~~~m~~~g~~p~~~t~ 517 (540)
-+.+|..+| .|....|
T Consensus 90 rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTCS-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 666776665 3333333
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.73 E-value=62 Score=29.75 Aligned_cols=138 Identities=12% Similarity=-0.020 Sum_probs=71.9
Q ss_pred HcCCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHH----HCC--CCCCHHHHHHHHHH
Q 042609 349 CRMKDVHGAKT----LLSKMISEGPPPGNAVFNSVISAYSKAGDMT-PAMEMLKLMR----SRG--LKPDVYTYTGLMSG 417 (540)
Q Consensus 349 ~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~----~~g--~~p~~~t~~~ll~~ 417 (540)
.+.|+...|-+ +.+...+.+.+++......++..+.....-+ .=.++++.+. +.| ..-|......+-..
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 34455444433 3444445567777777777776665533211 1233333333 222 22366677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKL---EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALD 494 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~ 494 (540)
|.+.|++.+|..-|- .|-.-+...+..++.-+... |...++ +...-.+++.-+| .|+
T Consensus 144 ~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~yL~--l~n 203 (312)
T 2wpv_A 144 LLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFNYLF--ISN 203 (312)
T ss_dssp HHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHHHHH--TTB
T ss_pred HhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHHHHH--hcC
Confidence 888888877776653 11111344554444444433 443332 2223344554444 567
Q ss_pred HHHHHHHHHHHH
Q 042609 495 WRTAEKLLEDMR 506 (540)
Q Consensus 495 ~~~A~~l~~~m~ 506 (540)
...|.++++...
T Consensus 204 ~~~A~~~~~~f~ 215 (312)
T 2wpv_A 204 ISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888877664
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.48 E-value=41 Score=27.57 Aligned_cols=117 Identities=8% Similarity=-0.044 Sum_probs=65.6
Q ss_pred HHHHhhcChhhHHHHHHHHHHhcccCCCC--CC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHH
Q 042609 166 KAICSSVGKKEVYALWDIVKEIGEKEKGV--LT--VEILNELIALFSKLGKGKAAFEVFNKFGDY--GCVANQETYYFTI 239 (540)
Q Consensus 166 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--g~~p~~~t~~~ll 239 (540)
+.+...+.++.|.-+-+.+..+...+... |. ..++..+.+++...|++.+|...|++.++. .+..+..++..+
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~- 106 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST- 106 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc-
Confidence 35556677888888777766655432211 11 236677788899999999999999996432 111121111111
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLARE 295 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (540)
........ ......+...---+..+|.+.|+.++|+.+++.+..
T Consensus 107 ---~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 107 ---GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ---cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000000 011223445555577888999999999998887543
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.63 E-value=31 Score=25.49 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
+.+.|++++|..+.+.+ +.||...|.+|-.. +.|..+++..-+.++...
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 44455555555444322 24555555444332 445555554444444433
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.54 E-value=37 Score=33.00 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=40.7
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042609 340 PFSSVIRSLCRMKDVHGAKTLLSKMISE--GPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMR 400 (540)
Q Consensus 340 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (540)
+...+...|.+.|+++.|.+++.++... +...-...+-.+|..+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5667777777777777777777777643 222234456666777777777777777776654
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.25 E-value=30 Score=30.93 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=67.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 042609 347 SLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRG--LKPDVYTYTGLMSGYANGGQM 424 (540)
Q Consensus 347 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~ 424 (540)
...+.|.+++++.....-++.. +-|...-..+++.+|-.|++++|.+=++...+.. ..|...+|..+|.+=
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 4556788888888887777663 4477777788888888888888888777766552 122233444444431
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 042609 425 EEACEILNEAKKNHSRL-----SPVTYHTLIRGYC--KLEEFDCALKLLNEMKD 471 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 471 (540)
..=.+....+-.| ...-...|+.+.. ..|+.++|..+-.++.+
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111222221111 2223344444443 46888888888877763
No 261
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.64 E-value=45 Score=26.90 Aligned_cols=51 Identities=6% Similarity=-0.067 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 042609 462 ALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHL 512 (540)
Q Consensus 462 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p 512 (540)
+.++|..|...|+--....|..--..+....|++.+|.++|+.=++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777776666655544443333334446667777777777776666666
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.36 E-value=76 Score=29.45 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042609 266 DSEKVGKIISWFCKGGKAKEAHVVY 290 (540)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~ 290 (540)
|......+...|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444555555555555555555544
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.38 E-value=36 Score=28.95 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=38.5
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 386 AGDMTPAMEMLKLMRSRGLKP-DVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRL 441 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (540)
.+...++.++|..|..+|+-- -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334567777888777775532 34556666667777788888888888777776666
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.77 E-value=30 Score=25.51 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042609 418 YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDV 472 (540)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (540)
+.+.|++++|..+.+.+ +.||...|.+|-.. +.|..+++..-+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 44555555555443322 24555555444332 455555555555444443
No 265
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.99 E-value=20 Score=28.11 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE--FDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 475 (540)
...++.-|...|+.++|.+.++++..... -.......+..++-+.++ .+.+..++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45566666666677777666666542110 112333344444444322 34555666666555443
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.58 E-value=55 Score=30.78 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCcHH-HHHHHHH
Q 042609 446 YHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKAL--DWRTAEKLLEDMRLKGLHLNGI-TRALIRA 522 (540)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~-t~~ll~a 522 (540)
...++.-|...|+.++|.+.++++....+. ...+...+..++- +.+ ..+...+++..+...|+-+... .-++.+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE-~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLE-STGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHc-cCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 466677777777777777777777532222 1233334444432 322 2345677777777666544332 2244444
Q ss_pred HHHHHH
Q 042609 523 VKELEE 528 (540)
Q Consensus 523 ~~~l~~ 528 (540)
+..+.+
T Consensus 298 l~~ldD 303 (358)
T 3eiq_C 298 YNEIPD 303 (358)
T ss_dssp HHHHHH
T ss_pred HHhccH
Confidence 444444
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.34 E-value=74 Score=29.16 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFG 224 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~ 224 (540)
...+|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556677777777777777777764
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.25 E-value=53 Score=26.14 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=9.7
Q ss_pred hCCCHHHHHHHHHHHHHC
Q 042609 491 KALDWRTAEKLLEDMRLK 508 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~~ 508 (540)
+.|++++|.++.+.+++.
T Consensus 89 kl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 89 KLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTTCHHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHhc
Confidence 555555555555555543
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.53 E-value=50 Score=32.02 Aligned_cols=62 Identities=18% Similarity=-0.049 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCC--cccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042609 304 VVAFLISSLCQEDETVKLALDMLDDFSGEARKYA--IKPFSSVIRSLCRMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 304 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 366 (540)
+...+-..+++. |+++.|.+.|.++......+. ...+-.+|..+...+++..+.....+...
T Consensus 133 ~~~~la~~~~~~-Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQI-GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHH-CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555666665 999999999999887543322 33477788888899999999999888753
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.06 E-value=67 Score=26.26 Aligned_cols=52 Identities=8% Similarity=0.130 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 042609 462 ALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLN 513 (540)
Q Consensus 462 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 513 (540)
+..+|..|...|+--....|..--..+....|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455555555555444433333333333355555555555555555555553
No 271
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.33 E-value=65 Score=26.38 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISE-GPPPGN-------AVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
+-.-+..+...+.++.|.-+.+.+... +.+|+. .++..+.+++...|++..|...|++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444455566666666666666654422 112231 24455666777777777777777765
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.27 E-value=1.9e+02 Score=31.22 Aligned_cols=273 Identities=12% Similarity=-0.033 Sum_probs=144.3
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHhCCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 042609 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTI--EALSRRKIFDWAWSVCEKMIETGS--L-----PDSEKVGKIISW 276 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll--~~~~~~~~~~~a~~~~~~m~~~g~--~-----p~~~~~~~li~~ 276 (540)
+....|+.++++.++......+-..+..+-...+ -+....|..+++..++...+...- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4667888888888887765422123444333333 334556666667777766654321 0 111122233233
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHHH-HHH-HHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCC
Q 042609 277 FCKGGK-AKEAHVVYTLAREKKMYPPQSV-VAF-LISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKD 353 (540)
Q Consensus 277 ~~~~g~-~~~A~~~~~~m~~~~~~p~~~~-~~~-ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 353 (540)
.+-.|. -+++...+..+....- + ... ... -++......|+.+....++..+.+.. .-++.-+..+.-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-A-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-H-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-H-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 333332 2355555555554331 1 111 122 22222222366676777777665432 1112223333334447889
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHH
Q 042609 354 VHGAKTLLSKMISEGPPPGNAVFN--SVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS--GYANGGQMEEACE 429 (540)
Q Consensus 354 ~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~ 429 (540)
.+.+..+.+.+... ..|...--. ++.-+|+..|+.....+++..+... ++..+-...+- ++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999998888764 233333222 3344677788988888899988876 23333333333 3344566666777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042609 430 ILNEAKKNHSRLSPVTYHTLIRGYCKLEEF-DCALKLLNEMKDVGVQPNVDEYNKLIQSLC 489 (540)
Q Consensus 430 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 489 (540)
+++.+.+.+ .|....-.++.-+....|.. .++..++..+... +|..+-..-+.++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALS 672 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence 777666654 45555445555555555554 6788888888753 45444433333444
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=58.28 E-value=68 Score=25.49 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 403 GLKPDVYTYTGLMSGYANGGQ---MEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 479 (540)
+-.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....--|.-++.+.|++++|.+..+.+++. .|+..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 335777777777777777664 5679999999988643224456667788999999999999999999986 57654
Q ss_pred HHH
Q 042609 480 EYN 482 (540)
Q Consensus 480 ~~~ 482 (540)
-..
T Consensus 112 QA~ 114 (144)
T 1y8m_A 112 QVG 114 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 274
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.61 E-value=71 Score=27.60 Aligned_cols=53 Identities=6% Similarity=0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 042609 460 DCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHL 512 (540)
Q Consensus 460 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p 512 (540)
+.+..+|..|...|+--....|..--..+....|++.+|.++|+.=++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34556666666665554444433333333345666666666666666666666
No 275
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=57.43 E-value=68 Score=25.16 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042609 403 GLKPDVYTYTGLMSGYANGG---QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD 479 (540)
Q Consensus 403 g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 479 (540)
+-.|+..|--.+..++.+.. +..+++.+++++.+.+..-....+--|.-++.+.|++++|.+..+.+.+. .|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 44567777666777777765 45679999999988752223567777888999999999999999999975 56655
Q ss_pred HHHHHH
Q 042609 480 EYNKLI 485 (540)
Q Consensus 480 ~~~~ll 485 (540)
-...|-
T Consensus 113 QA~~Lk 118 (134)
T 3o48_A 113 QVGALK 118 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.20 E-value=1.1e+02 Score=27.40 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=68.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchH
Q 042609 240 EALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETV 319 (540)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 319 (540)
....+.|.+++++.....-++.. +-|...-..|+..+|-.|++++|.+-++...+.+ |+...-..+.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHH------
Confidence 34567788888888888888774 4677888888999999999999988888776644 33222211111111
Q ss_pred HHHHHHHHHhHhccCCCCccc-----HHHHHHHHH--cCCCHHHHHHHHHHHHH
Q 042609 320 KLALDMLDDFSGEARKYAIKP-----FSSVIRSLC--RMKDVHGAKTLLSKMIS 366 (540)
Q Consensus 320 ~~a~~~~~~m~~~~~~~~~~~-----~~~li~~~~--~~g~~~~a~~~~~~m~~ 366 (540)
.|+..-.++...+..|.... ...++.+.. ..|+.++|..+-.+..+
T Consensus 76 -~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 76 -KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11222222333333332221 344455544 34777777777776654
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=56.98 E-value=31 Score=27.87 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE--FDCALKLLNEMKDVGVQ 475 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 475 (540)
....+|.-|...|+.++|...++++..-. .-...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 35566777777777777777777764211 1112333444444444322 34566666666655543
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.91 E-value=1.3e+02 Score=27.51 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=37.6
Q ss_pred HhcCChHHHHHH----HHHHhhCCCCCCHHHHHHHHHHHHhCCChh-HHHHHHHHH----HHCC--CCCCHHHHHHHHHH
Q 042609 208 SKLGKGKAAFEV----FNKFGDYGCVANQETYYFTIEALSRRKIFD-WAWSVCEKM----IETG--SLPDSEKVGKIISW 276 (540)
Q Consensus 208 ~~~g~~~~A~~~----f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~m----~~~g--~~p~~~~~~~li~~ 276 (540)
.+.|+...|-++ .+-..+.+.++|.....-++..+.....-+ .=.++.+.+ .+.| ..-|......+...
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 445555444443 233334455666665555555554422111 111222222 2222 12355555666666
Q ss_pred HHhcCCHHHHHHHH
Q 042609 277 FCKGGKAKEAHVVY 290 (540)
Q Consensus 277 ~~~~g~~~~A~~~~ 290 (540)
|.+.|++.+|+..|
T Consensus 144 ~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 144 LLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HhhcCCHHHHHHHH
Confidence 66666666665554
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.45 E-value=25 Score=29.41 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=5.5
Q ss_pred hcCChHHHHHHH
Q 042609 209 KLGKGKAAFEVF 220 (540)
Q Consensus 209 ~~g~~~~A~~~f 220 (540)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 445544444444
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.40 E-value=83 Score=25.33 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 427 ACEILNEAKKNHSRL-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 427 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+.++|..|..+|+-- -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 677777777776533 34556666777777777777777777777766666
No 281
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.59 E-value=1.5e+02 Score=27.45 Aligned_cols=126 Identities=14% Similarity=0.061 Sum_probs=69.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042609 362 SKMISEGPPPGNAVFNSVISAYSKAGDMT-PAMEMLKLMRS----RG--LKPDVYTYTGLMSGYANGGQMEEACEILNEA 434 (540)
Q Consensus 362 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m 434 (540)
+...+.++++|......++..+.....-+ .=..+.+++.+ .| ..-|......+-..|.+.+++.+|..-|-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-- 160 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-- 160 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--
Confidence 34444556666666666666665544321 11223333322 12 23466677777888888888888877762
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 435 KKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 435 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
. |-.+.+..|..++.-+...+... .++...-.+++.-+| .++...|..+++...+
T Consensus 161 l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~yL~--l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 161 L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLPYLL--VANVRAANTAYRIFTS 215 (336)
T ss_dssp T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHH
Confidence 2 33344466655554444443311 234444555665444 5677888777766553
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.45 E-value=1.2e+02 Score=27.70 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCcH-HHHHHHH
Q 042609 445 TYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALD--WRTAEKLLEDMRLKGLHLNG-ITRALIR 521 (540)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~--~~~A~~l~~~m~~~g~~p~~-~t~~ll~ 521 (540)
....++.-|...|+.++|.+.++++....+. ...+...+..++- +.++ .+...+++..+.+.|+-+.. ..-++-+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE-~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLE-STGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHT-CCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4578889999999999999999999632222 1334444554443 3322 46678899999877765543 3335555
Q ss_pred HHHHHHHhhh
Q 042609 522 AVKELEEDAI 531 (540)
Q Consensus 522 a~~~l~~~~~ 531 (540)
.+..+++-.+
T Consensus 246 vl~~l~Dl~l 255 (307)
T 2zu6_B 246 IYNEIPDINL 255 (307)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhccHhhc
Confidence 5555555443
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.42 E-value=20 Score=31.84 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=6.3
Q ss_pred HHHHHHHCCCCCc
Q 042609 501 LLEDMRLKGLHLN 513 (540)
Q Consensus 501 l~~~m~~~g~~p~ 513 (540)
+.+.+.+.|..++
T Consensus 268 i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 268 IAELLCKRGASTD 280 (285)
T ss_dssp HHHHHHHHSSCSC
T ss_pred HHHHHHHcCCCCC
Confidence 3344445555554
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.45 E-value=1e+02 Score=25.12 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042609 426 EACEILNEAKKNHSRLS-PVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNV 478 (540)
Q Consensus 426 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 478 (540)
.+.++|..|..+|+--. +..|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 36677888888775433 456777777777888888888888888877777743
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.75 E-value=49 Score=28.40 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=13.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCC
Q 042609 205 ALFSKLGKGKAAFEVFNKFGDYGCV 229 (540)
Q Consensus 205 ~~~~~~g~~~~A~~~f~~m~~~g~~ 229 (540)
...+..|+.+-+..+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3344556666666666555444433
No 286
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.15 E-value=65 Score=29.57 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=71.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPPGN---AVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT--YTGLMSGYA 419 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~ 419 (540)
+...+..|+.+-+..+++ +.|..++. ...+.+..+.. .+.......+.+.+.+.|..++... -.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 333455677665544443 23443332 12223333222 2233333445555677776554321 112344456
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHH
Q 042609 420 NGGQMEEACEILNEAKKNHSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWR 496 (540)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~ 496 (540)
..|..+....++.. .|..++. .-++.|. .-++.|+.+ +.+.+++.|..+|..+ .|..+ + +.|+.
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~~GAd~n~~~--~L~~A-~-~~~~~- 314 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTDCGD--LVMTA-R-RNYDH- 314 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHTTSCSSTTCC--HHHHH-H-HTTCH-
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCC--HHHHH-H-HcCCH-
Confidence 67777665554432 2332221 1122333 334667654 3444567787777654 34333 3 56664
Q ss_pred HHHHHHHHHHHCCCCCcH
Q 042609 497 TAEKLLEDMRLKGLHLNG 514 (540)
Q Consensus 497 ~A~~l~~~m~~~g~~p~~ 514 (540)
++.+.+++.|-.||.
T Consensus 315 ---~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 315 ---SLVKVLLSHGAKEDF 329 (337)
T ss_dssp ---HHHHHHHHTTCCC--
T ss_pred ---HHHHHHHHCcCCCCC
Confidence 355667788877774
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.31 E-value=53 Score=28.15 Aligned_cols=26 Identities=4% Similarity=-0.034 Sum_probs=15.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCC
Q 042609 239 IEALSRRKIFDWAWSVCEKMIETGSL 264 (540)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~m~~~g~~ 264 (540)
+...++.|+.+.+..+++.+.+.|..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44455567766666666655555543
No 288
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.62 E-value=85 Score=29.22 Aligned_cols=294 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 201 NELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKG 280 (540)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 280 (540)
+.++.-|...|+.++|.+.++++......+...........=.+....+.+..++..+.+.|+-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred CC--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCC
Q 042609 281 GK--------AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMK 352 (540)
Q Consensus 281 g~--------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 352 (540)
.+ +....++...+...|+.|-...+..+...+...+....-...+++.+.. ...-..+...+.+.|
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~------~~g~~~l~~~~~~s~ 168 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCK------SMGPKKVGTLWREAG 168 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHH------HHCHHHHHHHHHHTT
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHH------HcCHHHHHHHHHHcC
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042609 353 DVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILN 432 (540)
Q Consensus 353 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 432 (540)
-- +..+ ++++.. +..+.+...++........-......+-...-..|...+...-..++....++
T Consensus 169 l~------l~~f----~P~~~~-----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~ 233 (339)
T 1ug3_A 169 LS------WKEF----LPEGQD-----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIE 233 (339)
T ss_dssp CC------GGGT----SCTTCC-----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CC------HHHh----CCCchh-----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 433 EAKKNHSRLSPVTYHTLIRGYCKL-----EEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 433 ~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
........++...-.+++.+.++. +......+++.. |..++..|+.....--.++..++....
T Consensus 234 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~l~~------------~~pll~~~~~~~~~ql~~L~alQ~~~~ 301 (339)
T 1ug3_A 234 ANLSEQQIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKA------------RAKLLQKYLCDEQKELQALYALQALVV 301 (339)
T ss_dssp HHSCHHHHTCHHHHHHHHHHHHHHTEECSSSCEECHHHHHH------------HHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hcCChhhCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Q ss_pred CCCCCcHHHHHHHHHHHHHH
Q 042609 508 KGLHLNGITRALIRAVKELE 527 (540)
Q Consensus 508 ~g~~p~~~t~~ll~a~~~l~ 527 (540)
..-.|......++..+-+.+
T Consensus 302 ~~~~~~~~l~~~~~~LYd~d 321 (339)
T 1ug3_A 302 TLEQPPNLLRMFFDALYDED 321 (339)
T ss_dssp HTTCCTTHHHHHHHHHHHTT
T ss_pred hccChHHHHHHHHHHHhCcc
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.91 E-value=29 Score=30.81 Aligned_cols=214 Identities=11% Similarity=0.073 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc--HHHH
Q 042609 271 GKIISWFCKGGKAKEAHVVYTLAREKKMYPP----QSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP--FSSV 344 (540)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l 344 (540)
+..+...++.|+++....+++ .|..++ ..-++.+ ...+.. |+.+-+. .+.+.|..++... -.+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L-~~A~~~-g~~~~v~----~Ll~~g~~~~~~~~~g~t~ 75 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPL-HNAVQM-SREDIVE----LLLRHGADPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHH-HHHHHT-TCHHHHH----HHHHTTCCTTCCCTTCCCH
T ss_pred chHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHH-HHHHHc-CCHHHHH----HHHHcCCCCcccCCCCCCH
Confidence 455667788888876665554 443332 1122333 333444 6655444 3444455444322 1223
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-----------
Q 042609 345 IRSLCRMKDVHGAKTLLSKMISEGPPPGNA---VFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYT----------- 410 (540)
Q Consensus 345 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------- 410 (540)
+...+..|+.+ +++.+.+.|..++.. .++. +...+..|+.+ +++.+.+.|..++...
T Consensus 76 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 76 FLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRK 146 (285)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhcc
Confidence 34444556654 444555566555432 2233 33445566654 4455556665554320
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHH
Q 042609 411 -YTGLMSGYANGGQMEEACEILNEAKKN-HSRLSP---VTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVD---EYN 482 (540)
Q Consensus 411 -~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~ 482 (540)
-...+...+..|+.+-...+ .+. |..++. .-.+.+ ...+..|......++.+.+.+.|..++.. -.+
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t 221 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKIL----LDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHH----HHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHH----HHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence 11344445566776544444 433 443332 222333 33345666655667777788888776543 233
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCcH
Q 042609 483 KLIQSLCLKALDWRTAEKLLEDMRL-KGLHLNG 514 (540)
Q Consensus 483 ~ll~~~~~~~g~~~~A~~l~~~m~~-~g~~p~~ 514 (540)
.|..+ + +.|+.+- ++.+.+ .|..++.
T Consensus 222 ~L~~A-~-~~~~~~~----v~~Ll~~~g~~~~~ 248 (285)
T 1wdy_A 222 PLILA-V-EKKHLGL----VQRLLEQEHIEIND 248 (285)
T ss_dssp HHHHH-H-HTTCHHH----HHHHHHSSSCCTTC
T ss_pred HHHHH-H-HcCCHHH----HHHHHhccCCCccc
Confidence 44433 4 5666544 444444 5666554
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.37 E-value=1.3e+02 Score=24.10 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI--FDWAWSVCEKMIETGSLPD 266 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 266 (540)
..+.++.-|...|+.++|.+.++++.... --...+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45678888888999999999999885311 1123444444555554322 4557777777777765443
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.54 E-value=3.2e+02 Score=27.80 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=75.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 380 ISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSG----YANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCK 455 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (540)
+.-+.+. +.+.|...+....+.+. .+......+-.. ....+...++...+....... .+.....-.+....+
T Consensus 222 ~~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHH
Confidence 3334443 77999999988865432 243333333333 334453556666666655543 444444445555567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRL 507 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~ 507 (540)
.|+++.|...|+.|......-+.-.|..-- ++ ...|+.++|..+|+++.+
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~r-a~-~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQAD-LL-LERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHH-HH-HHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHH-HH-HHcCCHHHHHHHHHHHhc
Confidence 899999999999987542222333444333 33 378999999999999975
No 292
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=38.96 E-value=81 Score=26.13 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=2.8
Q ss_pred hcCChHH
Q 042609 209 KLGKGKA 215 (540)
Q Consensus 209 ~~g~~~~ 215 (540)
+.|+++.
T Consensus 15 ~~g~~~~ 21 (186)
T 3t8k_A 15 MLGTYED 21 (186)
T ss_dssp HHSCHHH
T ss_pred HcCCHHH
Confidence 3344443
No 293
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=38.52 E-value=0.39 Score=47.04 Aligned_cols=244 Identities=16% Similarity=0.089 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042609 232 QETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQSVVAFLISS 311 (540)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 311 (540)
...|..|..+..+.+++.+|++-|- +. -|...|..+|....+.|.+++-.+.+...++..-.| ..=+.++-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence 3468888888888888888765542 22 345568889999999999999999988776654333 444567888
Q ss_pred HHhCCchHHHHHHHHHHhHhccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCC--------------------CCC
Q 042609 312 LCQEDETVKLALDMLDDFSGEARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEG--------------------PPP 371 (540)
Q Consensus 312 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------~~p 371 (540)
|.+. ++..+.+++ -..|+..-...+.+-|...|.++.|.-+|..+-... -.-
T Consensus 126 yAk~-~rL~elEef-------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 126 LAKT-NRLAELEEF-------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHTS-CSSSTTTST-------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHhh-CcHHHHHHH-------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887 554433332 234667777888888888888888877776553221 123
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 372 GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIR 451 (540)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (540)
+..||..+-.+|...+++.-|.-.--.+.-. || -...++..|-..|.+++-+.+++.-.... +.....|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 5667888888888888776664443333311 11 12335566778888888888888877432 567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHHhCCCHHHHH
Q 042609 452 GYCKLEEFDCALKLLNEMKD-VGVQP------NVDEYNKLIQSLCLKALDWRTAE 499 (540)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~-~g~~p------~~~~~~~ll~~~~~~~g~~~~A~ 499 (540)
.|++- +.++..+.++..-. -+++. ....|.-++-.|+ +-.+|+.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~-~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD-KYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHH-HHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHh-cchhHHHHH
Confidence 99887 45555555443321 12211 1233556665555 455666554
No 294
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.45 E-value=1.5e+02 Score=24.47 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=46.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHH
Q 042609 385 KAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSR--LSPVTYHTLIRGYCKLEEFDCA 462 (540)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A 462 (540)
-.|.+..++-++...- ..+..-|.. -+|-+..++.+|...++.+++..+. ||+.. -
T Consensus 45 yngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~----------------~ 102 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDA----------------R 102 (242)
T ss_dssp HTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH----------------H
T ss_pred hcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCccccc----------------c
Confidence 4566666665543211 011122222 2455677777777777777754433 22110 0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042609 463 LKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLED 504 (540)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~ 504 (540)
++.|.-. +-|..-|..++.-+|.+.|+.++|++.+..
T Consensus 103 ---~~~ffvd--~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 103 ---IQEMFVD--PGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp ---HHTTSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---cceeeec--cchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 0011100 234555566666666677777777776654
No 295
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=38.09 E-value=57 Score=26.72 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 411 YTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 411 ~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
...+|.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4556666777777777777777655
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.54 E-value=45 Score=28.49 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=4.7
Q ss_pred hCCCHHHHHHHH
Q 042609 491 KALDWRTAEKLL 502 (540)
Q Consensus 491 ~~g~~~~A~~l~ 502 (540)
+.|+.+-+.-++
T Consensus 219 ~~~~~~~v~~L~ 230 (240)
T 3eu9_A 219 QRKNVWMINHLQ 230 (240)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCcHHHHHHHH
Confidence 344443333333
No 297
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.37 E-value=1.7e+02 Score=23.59 Aligned_cols=11 Identities=18% Similarity=0.160 Sum_probs=4.7
Q ss_pred HHHHHHHHCCC
Q 042609 429 EILNEAKKNHS 439 (540)
Q Consensus 429 ~~~~~m~~~g~ 439 (540)
.+-.++...|+
T Consensus 84 ~I~~eL~~KGI 94 (159)
T 3c1d_A 84 RIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 33444444443
No 298
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=33.79 E-value=4e+02 Score=27.37 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh-
Q 042609 202 ELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGS-LPDSEKVGKIISWFCK- 279 (540)
Q Consensus 202 ~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~- 279 (540)
.....+.-.|+++.|++.+-+. ...|.+.+.+.+.-+ |-+... +.+..... .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC----------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcc-cccHHHHHHHHHHH
Confidence 4555667789999999987754 244555555544443 332221 11111100 11 2235677777765
Q ss_pred --cCCHHHHHHHHHHH
Q 042609 280 --GGKAKEAHVVYTLA 293 (540)
Q Consensus 280 --~g~~~~A~~~~~~m 293 (540)
..+..+|.++|-.+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 47788888877665
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.77 E-value=1.6e+02 Score=22.69 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKI--FDWAWSVCEKMIETGSLPD 266 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 266 (540)
..+.++.-|...|+.++|.+.++++.... --...+...+..++-+.+. .+.+.+++..+.+.|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35678888888999999999999886321 1123444444555555432 4567777777777765443
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.13 E-value=2.9e+02 Score=25.36 Aligned_cols=57 Identities=9% Similarity=-0.040 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHH
Q 042609 458 EFDCALKLLNEMKDVGVQPNVDE--YNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGI 515 (540)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 515 (540)
+..+..++-.-+-...++|.... ...-|... .+.+++..|..+-+++++.+..++..
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a-~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQH-FKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 34445555555555555543322 22333222 36777888888888887776655543
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.09 E-value=40 Score=28.84 Aligned_cols=14 Identities=7% Similarity=0.387 Sum_probs=6.6
Q ss_pred HHHHHHhcCCHHHH
Q 042609 273 IISWFCKGGKAKEA 286 (540)
Q Consensus 273 li~~~~~~g~~~~A 286 (540)
.+...+..|+.+-+
T Consensus 45 ~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 45 LLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHH
Confidence 34444555555433
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.92 E-value=2.4e+02 Score=24.56 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=51.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042609 343 SVIRSLCRMKDVHGAKTLLSKMISE--GPPP----GNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMS 416 (540)
Q Consensus 343 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 416 (540)
--++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 4578888888888888888876532 2221 11122222333333333333444444442 2 345566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042609 417 GYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~ 436 (540)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77778888888887766554
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.57 E-value=90 Score=26.95 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042609 425 EEACEILNEAKKNHSRL-SPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQP 476 (540)
Q Consensus 425 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 476 (540)
+.+.++|..|..+|+-- -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566777777766533 34556666777777777777777777777666666
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.22 E-value=1.4e+02 Score=23.68 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=30.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (540)
+.+.|+++ ..--..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 18 l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44555553 2333444445544444555666666666555445555555555555555543
No 305
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.56 E-value=2.2e+02 Score=23.29 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042609 371 PGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLI 450 (540)
Q Consensus 371 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (540)
++...-...+.++++.|..+.. ..+..+.. .++...-...+.++.+.++.+ +...+..+.. .++...-...+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4555555666677777765443 33333333 357777777777777777643 4444444443 35766666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHHH
Q 042609 451 RGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITR-ALIRAVKELE 527 (540)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~ll~a~~~l~ 527 (540)
.++.+.|.. ++...+..+.. .++...-...+.++. +.|+ .++...+..+.+. ++.... ..+.++.+++
T Consensus 129 ~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~-~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 129 FALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG-EIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH-HHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH-HhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 777777764 44555555554 256666667777776 4554 6777777777754 333333 5555555443
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.83 E-value=2.8e+02 Score=24.11 Aligned_cols=87 Identities=8% Similarity=-0.056 Sum_probs=45.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhh--CCCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042609 204 IALFSKLGKGKAAFEVFNKFGD--YGCVA----NQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWF 277 (540)
Q Consensus 204 i~~~~~~g~~~~A~~~f~~m~~--~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 277 (540)
++.+....++++|+++.++..+ .+.++ +.......+..-.....-..+..+.+.+ .. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 4556667777777777766543 12221 1112222233333333333344444444 22 34555566666777
Q ss_pred HhcCCHHHHHHHHHHH
Q 042609 278 CKGGKAKEAHVVYTLA 293 (540)
Q Consensus 278 ~~~g~~~~A~~~~~~m 293 (540)
.+.|+-++|..+|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 8888888888777554
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.69 E-value=83 Score=26.68 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=7.5
Q ss_pred HHHhcCCHHHHHHHHH
Q 042609 276 WFCKGGKAKEAHVVYT 291 (540)
Q Consensus 276 ~~~~~g~~~~A~~~~~ 291 (540)
..++.|+++....+++
T Consensus 12 ~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 12 NLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3444555555444443
No 308
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.46 E-value=2.4e+02 Score=23.32 Aligned_cols=167 Identities=14% Similarity=0.055 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 341 FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 341 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
-...+..+++.+..+ +...+..+.. .++...-...+.++++.|..+. ...+..+.. .++...-...+.++.+
T Consensus 36 R~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 36 RRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp HHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 334445555555432 3333333332 3455556666677777776433 333333333 3576777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHH
Q 042609 421 GGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEK 500 (540)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~ 500 (540)
.++.+ +...+..+.+ .++...-...+.++.+.|.. ++...+..+.+ .++..+-...+.++. +.+. .++..
T Consensus 108 ~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~-~~~~-~~~~~ 177 (211)
T 3ltm_A 108 IGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG-EIGG-ERVRA 177 (211)
T ss_dssp HCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH-HHCS-HHHHH
T ss_pred hCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH-HhCc-hhHHH
Confidence 77643 4444444543 35766666677777777764 34555555553 356666666676766 4444 67777
Q ss_pred HHHHHHHCCCCCcHHHH-HHHHHHHHHHH
Q 042609 501 LLEDMRLKGLHLNGITR-ALIRAVKELEE 528 (540)
Q Consensus 501 l~~~m~~~g~~p~~~t~-~ll~a~~~l~~ 528 (540)
.+.++.+. ++.... ..+.++..+..
T Consensus 178 ~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 178 AMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 77777664 333333 55666655554
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.03 E-value=1.4e+02 Score=23.49 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=27.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE 458 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (540)
+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4445555333 2233333443444444455555555555444455554444555555554
No 310
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.85 E-value=34 Score=29.42 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=9.2
Q ss_pred hCCCHHHHHHHHHHHHH
Q 042609 491 KALDWRTAEKLLEDMRL 507 (540)
Q Consensus 491 ~~g~~~~A~~l~~~m~~ 507 (540)
..|+...+.++.+.+.+
T Consensus 219 ~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44555555555555543
No 311
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.65 E-value=96 Score=29.22 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042609 409 YTYTGLMSGYANGGQMEEACEILNEAK 435 (540)
Q Consensus 409 ~t~~~ll~~~~~~g~~~~A~~~~~~m~ 435 (540)
.....+|.-|...|++++|...++++.
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345667777777788888777777764
No 312
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=27.58 E-value=5e+02 Score=26.38 Aligned_cols=226 Identities=12% Similarity=0.011 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhH--HHHHHHHHHHCCC----------
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDW--AWSVCEKMIETGS---------- 263 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~m~~~g~---------- 263 (540)
+...-.....+....|+..+|......+-..| ......+..++..+.+.|.+.. .++=++.+...|-
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55666666667777788777777666665444 3344556666666666554433 2222222222221
Q ss_pred -CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCc
Q 042609 264 -LPDS-EKVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS---VVAFLISSLCQEDETVKLALDMLDDFSGEARKYAI 338 (540)
Q Consensus 264 -~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 338 (540)
.++. .....++..+.+-..+ ..... . ..++.. .+...+.-+.+ .+.+.|...|....... ..+.
T Consensus 180 l~~~~~~~a~~~~al~~~p~~~---~~~~~---~--~~~~~~~~~~~~~~~~rlar--~d~~~A~~~~~~~~~~~-~~~~ 248 (618)
T 1qsa_A 180 MPADYQTIASAIISLANNPNTV---LTFAR---T--TGATDFTRQMAAVAFASVAR--QDAENARLMIPSLAQAQ-QLNE 248 (618)
T ss_dssp CCGGGHHHHHHHHHHHHCGGGH---HHHHH---H--SCCCHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHT-TCCH
T ss_pred CCHHHHHHHHHHHHHHhChHhH---HHHHh---c--cCCChhhHHHHHHHHHHHHh--cCHHHHHHHHHhhhhcc-CCCH
Confidence 0111 0111111111111111 11100 0 112221 11122233333 35667777776665432 1122
Q ss_pred ccHHHH----HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 339 KPFSSV----IRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLMRSRGLKPDVYTYTGL 414 (540)
Q Consensus 339 ~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 414 (540)
.....+ ...+...+...++...+....... .+.....-.+....+.|+++.|...|+.|...... ...-.--+
T Consensus 249 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~ 325 (618)
T 1qsa_A 249 DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQ 325 (618)
T ss_dssp HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHH
Confidence 222222 222223332344455555444322 23222333334444567777777777766543211 23333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 042609 415 MSGYANGGQMEEACEILNEAKK 436 (540)
Q Consensus 415 l~~~~~~g~~~~A~~~~~~m~~ 436 (540)
-.++...|+.++|..+|+.+.+
T Consensus 326 ~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 326 ADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHhc
Confidence 4556667777777777777664
No 313
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=27.50 E-value=3.6e+02 Score=24.62 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 462 ALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 462 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
|..+++.|.. ...|..++..++-. +..-+.....+-|+++-
T Consensus 249 A~~L~~am~g--~Gtd~~~Liriiv~--rse~dl~~Ik~~y~~~y 289 (315)
T 1dm5_A 249 AERLHHAMKG--LGTSDKTLIRILVS--RSEIDLANIKETFQAMY 289 (315)
T ss_dssp HHHHHHHHCT--TCCCHHHHHHHHHH--HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhc--CCCCHHHHhHHHHh--cCHHHHHHHHHHHHHHh
Confidence 4555555543 33455554444422 12334555555555443
No 314
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=27.06 E-value=3.7e+02 Score=24.63 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042609 461 CALKLLNEMKDVGVQPNVDEYNKLIQSLCLKALDWRTAEKLLEDMR 506 (540)
Q Consensus 461 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~g~~~~A~~l~~~m~ 506 (540)
.|..+++.|... ..|..++..++-. +..-+.....+-|+++-
T Consensus 253 ~A~~L~~a~~g~--Gtde~~lirilv~--Rs~~dl~~i~~~Y~~~y 294 (322)
T 2zhj_A 253 FAERLYKSMKGL--GTDDSTLIRVMVS--RAEIDMLDIRANFKRLY 294 (322)
T ss_dssp HHHHHHHHHSSS--SCCHHHHHHHHHH--HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--CCCHHHHHHHHHH--cCHHHHHHHHHHHHHHh
Confidence 555555555533 3455555444422 22334555555555443
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.17 E-value=2e+02 Score=23.16 Aligned_cols=58 Identities=7% Similarity=-0.045 Sum_probs=30.8
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 042609 224 GDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIET--GSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~ 282 (540)
.+.|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 4456555443 333445555555555566666666655 444555554444455555543
No 316
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.09 E-value=2.8e+02 Score=22.92 Aligned_cols=71 Identities=11% Similarity=-0.040 Sum_probs=39.4
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042609 206 LFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGKAKE 285 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 285 (540)
.|-+..++.+|+..++.+....+..|+ +++.-.+ .|.- +.......|+.+...+.+.|+.++
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~--------------~~d~~~~---~ffv-d~~DkEfFy~l~a~lltq~g~r~E 132 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDP--------------DVDARIQ---EMFV-DPGDEEFFESLLGDLCTLSGYREE 132 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCC--------------CCCHHHH---TTSC-CTTCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCc--------------ccccccc---eeee-ccchHHHHHHHHHHHHHHhcCHHH
Confidence 566788999999999998865544221 1111111 1100 011223445566666777777777
Q ss_pred HHHHHHHHH
Q 042609 286 AHVVYTLAR 294 (540)
Q Consensus 286 A~~~~~~m~ 294 (540)
|.+.|..--
T Consensus 133 aI~y~~~Sf 141 (242)
T 3kae_A 133 GIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHH
T ss_pred hhhHhhhhc
Confidence 777765543
No 317
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.97 E-value=1.9e+02 Score=21.09 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 427 ACEILNEAKKNHSRLSPVTYHTLIRGYCKLE 457 (540)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (540)
|.++.++....|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3344444444455555555555555444443
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.70 E-value=1.6e+02 Score=20.14 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=27.9
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 223 FGDYGCVANQETYYFTIEALSRRK-IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555555433 23334443332 33345566666655544445555555555554444
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.60 E-value=34 Score=30.08 Aligned_cols=26 Identities=4% Similarity=-0.198 Sum_probs=14.1
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCC
Q 042609 206 LFSKLGKGKAAFEVFNKFGDYGCVAN 231 (540)
Q Consensus 206 ~~~~~g~~~~A~~~f~~m~~~g~~p~ 231 (540)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34456666666666665555444443
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.55 E-value=89 Score=27.93 Aligned_cols=18 Identities=0% Similarity=-0.016 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 042609 274 ISWFCKGGKAKEAHVVYT 291 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~~~ 291 (540)
+...+..|+.+-+..+++
T Consensus 35 L~~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344555676665544443
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.08 E-value=2.4e+02 Score=21.81 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=25.4
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042609 223 FGDYGCVANQETYYFTIEALSRRK-IFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGG 281 (540)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 281 (540)
|.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+.+.|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444544443322 2333333333 34445566666555544444444444444444433
No 322
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.90 E-value=1.1e+02 Score=27.36 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=9.5
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 042609 380 ISAYSKAGDMTPAMEMLKL 398 (540)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~ 398 (540)
+...+..|+.+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344455666555554443
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.86 E-value=2.8e+02 Score=22.48 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 042609 410 TYTGLMSGYANGGQMEEACEILNEAKKNHSRL--SPVTYHTLIR------GYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 410 t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 471 (540)
.|..-+..|-. |++-+|-++++.+-.....+ ....|..||+ ...+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 324
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.57 E-value=2.9e+02 Score=22.64 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=19.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042609 392 AMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHS 439 (540)
Q Consensus 392 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 439 (540)
+..+++.+.+.|.--|..--...+....+.|.+ -...+-.++...|+
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI 98 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCC
Confidence 334444444554443333333444443332211 11334444555554
No 325
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.32 E-value=1.7e+02 Score=24.64 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=11.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 042609 456 LEEFDCALKLLNEMKDVGVQPN 477 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~ 477 (540)
..+.+.|+-.+-+|++.|-.|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4455555555555555554443
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.16 E-value=1.4e+02 Score=23.12 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGG-QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE 458 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (540)
+.+.|++++. .-..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+.+.|-
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444444332 2223333333333 344455555555555444444444444444444443
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.03 E-value=4.9e+02 Score=25.07 Aligned_cols=152 Identities=9% Similarity=-0.058 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHh--------ccCCCCcccHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHh
Q 042609 318 TVKLALDMLDDFSG--------EARKYAIKPFSSVIRSLCRMKDVHGAKTLLSKMISEGP----PPGNAVFNSVISAYSK 385 (540)
Q Consensus 318 ~~~~a~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~ 385 (540)
..++...+++.... .+...+......++.. -.|+..++..+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHH
Q 042609 386 A------------------------GDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANGGQ-----MEEACEILNEAKK 436 (540)
Q Consensus 386 ~------------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~A~~~~~~m~~ 436 (540)
. ++.+.|+..+..|.+.|..|....-..++.++-.-|. +..|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042609 437 NHSRLSPVTYHTLIRGYCKLEEFDCALKLLNEMKD 471 (540)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (540)
.|.+-........+-.++.+-+-..+...++....
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.88 E-value=4.7e+02 Score=28.30 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHh
Q 042609 269 KVGKIISWFCKGGKAKEAHVVYTLAREKKMYPPQS----VVAFLISSLCQ 314 (540)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~ 314 (540)
-|..++..+-+.+.++.+.++-+...+.--.-|.. .|..++.+.+.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 56788888888888888888877777543222332 45556665554
No 329
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.50 E-value=1.7e+02 Score=24.03 Aligned_cols=129 Identities=10% Similarity=0.023 Sum_probs=77.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh-
Q 042609 382 AYSKAGDMTPAMEMLKLMRSRGLKPDVY--TYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPV---TYHTLIRGYCK- 455 (540)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~- 455 (540)
..++.|+++....++.. +.. ... .-.+.+...+..|+.+.-.++.+.+++.|..++.. -++.|..++..
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHhc----Ccc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 34577888876655543 322 221 12345555567777777778888888888766642 23333333322
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHhCCC-HHHHHHHHHHHHH-CCCCCcHHH
Q 042609 456 LEEFDCALKLLNEMKDVGVQPNVDEYN---KLIQSLCLKALD-WRTAEKLLEDMRL-KGLHLNGIT 516 (540)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~g~-~~~A~~l~~~m~~-~g~~p~~~t 516 (540)
..+.....++.+.+++.|..++..... +.+...+ ..|. ...-..+++.+.+ .|..++...
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~-~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF-NYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGG-GCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred CcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHH-HcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 334556677888888889888875431 3333323 3332 2456678888888 898888854
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.78 E-value=1.8e+02 Score=24.70 Aligned_cols=45 Identities=27% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 042609 479 DEYNKLIQSLCLKALDWRTAEKLLEDMRLKGLHLNGITRALIRAVKE 525 (540)
Q Consensus 479 ~~~~~ll~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ll~a~~~ 525 (540)
.+..+++.+. ++.|.+.|+-++-+|++.|-.|..+...|+..-.+
T Consensus 37 d~ISAf~KSi--RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 37 DVISAFIKSI--RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
No 331
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.39 E-value=1e+02 Score=20.16 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVAN 231 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~ 231 (540)
+..+-..++. ...|+++.|+..+-+|...+..|+
T Consensus 24 d~~~I~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 24 DQEVIRSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 4444444433 346778888888888776655554
No 332
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.29 E-value=6.5e+02 Score=25.82 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042609 199 ILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSR 244 (540)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~ 244 (540)
+| .+|-.|.++|.+++|.++.++.... +.--...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 45 4566788999999999999877542 11122356666666664
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.00 E-value=3.6e+02 Score=22.71 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=17.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042609 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYAN 420 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 420 (540)
..+.+.|+-.+.+|.+.|..|....-..++-+.-.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34555555555555555555544444444444433
No 334
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=21.76 E-value=47 Score=26.05 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=35.2
Q ss_pred cchhhhHhhcccccchHHHHHHHHHhhcChhhHHHHHHHHHHhcccCCCCCCHHHHHH
Q 042609 145 LGENLVCFFKWVTSGVVDALLKAICSSVGKKEVYALWDIVKEIGEKEKGVLTVEILNE 202 (540)
Q Consensus 145 ~~~~ll~~~~w~~~~~~~~li~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (540)
--|+++++|+|+..+.|...... ...-..+|++-......+...+++.|..+.|+.
T Consensus 24 WLNtilQLfryvdepfFd~~y~s--penlt~~~I~ql~e~TGldL~eGgPPalViw~i 79 (167)
T 1qmy_A 24 WLNAILQLFRYVEEPFFDWVYSS--PENLTLEAIKQLEDLTGLELHEGGPPALVIWNI 79 (167)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHTC--SSCCHHHHHHHHHHHHCCCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhccCC--hhhhhHHHHHHHHHhhcceeccCCCCEEEEEee
Confidence 34678888888877766644321 112223466666666666667788888888874
No 335
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=21.61 E-value=4.5e+02 Score=23.84 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-----HHHHH
Q 042609 200 LNELIALFSKLGKGKAAFEVFNKFGDYGCVANQETYYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEK-----VGKII 274 (540)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-----~~~li 274 (540)
|..++.++...--...|..+.+-|+..| .|..+..-++ +-....+.....+.|..+-...+.-+... |..++
T Consensus 64 fe~~l~~l~~~~~~~DA~~L~~AmkG~G--tde~~LieIL-~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ll 140 (308)
T 2hyv_A 64 LETVILGLLKTPAQYDASELKASMKGLG--TDEDSLIEII-CSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLM 140 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTSTTC--CCHHHHHHHH-HHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhcCC--CCHHHHHHHH-hcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHHHH
Q ss_pred HHHHhcCC------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHhHhccCCCCccc--
Q 042609 275 SWFCKGGK------------AKEAHVVYTLAREKKMYPPQSVVAFLISSLCQEDETVKLALDMLDDFSGEARKYAIKP-- 340 (540)
Q Consensus 275 ~~~~~~g~------------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-- 340 (540)
-+++...+ -.+|..+++.+ ..+.-.+..++..++..-.. .++......|+.+....+.-++..
T Consensus 141 ~~l~~~~r~~e~~~vd~~~a~~DA~~L~~A~-~~~~Gtde~~li~Il~~RS~--~~L~~i~~~Y~~~~g~~Le~~I~~e~ 217 (308)
T 2hyv_A 141 VALAKGRRAEDGSVIDYELIDQDARDLYDAG-VKRKGTDVPKWISIMTERSV--PHLQKVFDRYKSYSPYDMLESIRKEV 217 (308)
T ss_dssp HHHHTCCCCCCCSSCCHHHHHHHHHHHHHTT-TTSSSCCHHHHHHHHHHSCH--HHHHHHHHHHTTTCSSCHHHHHHHHC
T ss_pred HHHHccccccccCCCCccHHHHHHHHHHHHh-hccCCCcHHHHHHHHHhCCH--HHHHHHHHHHHHHHCcCHHHHHHHhc
Q ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 042609 341 -------FSSVIRSLCRMKDVHGAKTLLSKMISEGPPPGNAVFNSVISAYSKAGDMTPAMEMLKLM 399 (540)
Q Consensus 341 -------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (540)
+.+++.+........ |..+++.|...| .|..++..++.. -..-++......|+++
T Consensus 218 sG~~~~~L~~lv~~~~~~~~~~-A~~L~~A~~g~G--Tde~~lirilv~-Rs~~~l~~I~~~Y~~~ 279 (308)
T 2hyv_A 218 KGDLENAFLNLVQCIQNKPLYF-ADRLYDSMKGKG--TRDKVLIRIMVS-RSEVDMLKIRSEFKRK 279 (308)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHSSSS--CCHHHHHHHHHH-HTTTTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhccCCCcHHH-HHHHHHHhccCC--CCHHHHHHHHHh-cCHHHHHHHHHHHHHH
No 336
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.34 E-value=2.2e+02 Score=23.88 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 042609 453 YCKLEEFDCALKLLNEMKDVG 473 (540)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g 473 (540)
.+..|+.+-+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 334455555544445444444
No 337
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.06 E-value=37 Score=29.82 Aligned_cols=19 Identities=11% Similarity=-0.090 Sum_probs=8.0
Q ss_pred hCCChhHHHHHHHHHHHCC
Q 042609 244 RRKIFDWAWSVCEKMIETG 262 (540)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~g 262 (540)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3344444444444444433
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.03 E-value=1.4e+02 Score=23.66 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=26.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGGQMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEE 458 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (540)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34445554432 223333333333 33555566665555544455544444455555553
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.48 E-value=1.6e+02 Score=23.32 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=29.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042609 399 MRSRGLKPDVYTYTGLMSGYANGG-QMEEACEILNEAKKNHSRLSPVTYHTLIRGYCKLEEF 459 (540)
Q Consensus 399 m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (540)
|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44555554432 223334443333 3445666666666655445555555555555555543
No 340
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.26 E-value=2.9e+02 Score=21.60 Aligned_cols=37 Identities=11% Similarity=-0.072 Sum_probs=17.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042609 246 KIFDWAWSVCEKMIETGSLPDSEKVGKIISWFCKGGK 282 (540)
Q Consensus 246 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 282 (540)
+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3333455555555544444444444444445444443
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.11 E-value=4e+02 Score=22.50 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=16.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042609 386 AGDMTPAMEMLKLMRSRGLKPDVYTYTGLMSGYANG 421 (540)
Q Consensus 386 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 421 (540)
..+.+.|+-.+.+|.+.| .|....-..++-+.-.-
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDI 61 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDI 61 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Confidence 345555555555555555 44444444444444333
No 342
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.09 E-value=1.1e+02 Score=28.24 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 042609 196 TVEILNELIALFSKLGKGKAAFEVFNKFGDYGCVANQET--YYFTIEALSRRKIFDWAWSVCEKMIETGSLPDSEKVGKI 273 (540)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 273 (540)
|..-++.|. ..+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+ +.+++.|..++.....+.
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTA----KYLASVGEVHSLWHGQKP 87 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCH
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCccccCCCCH
Confidence 444444443 334556655444444 3343333211 11233444455665443 333444433333122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 042609 274 ISWFCKGGKAKEAHVVYTLAREKK 297 (540)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~~ 297 (540)
+...+..|+.+-+..+++.....+
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhccccC
Confidence 444556677776666666544434
No 343
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.00 E-value=5.4e+02 Score=24.01 Aligned_cols=25 Identities=8% Similarity=-0.173 Sum_probs=16.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Q 042609 235 YYFTIEALSRRKIFDWAWSVCEKMI 259 (540)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~m~ 259 (540)
...+|.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4456666666677777666666653
Done!