BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042610
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 165/344 (47%), Gaps = 35/344 (10%)
Query: 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
L L+ GNK G + ++ T LK+L++SSN+ G +P + L SL+YL+L +N+F
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 279
Query: 67 GRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTF------QLKVLSLPNCNLGAIP 120
G + F S A DL +P F + N G +P
Sbjct: 280 GEIPDFLS-------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 121 NFLLLQFN-LKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS----AQHG 175
LL+ LK LDLS N+ +G P L + L L L +N+FSG L + ++
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGL--LATYMNMT 233
L L + +N FTG++P + +LV +++S N G IPSS+G + L L ++NM
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 234 Q------------LWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFS 281
+ L L L ++ + +I GL T L + +SNN L+G IP W+G
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 282 HLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL 325
+L L +SNN GNIP + + L D++ N +G++ + +
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 185/383 (48%), Gaps = 52/383 (13%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLT-HLKVLDVSSNKLSG-ILPSVIANLT-SLEYLA 59
+++ L L+ N+F G LP+ L NL+ L LD+SSN SG ILP++ N +L+ L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 60 LYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTF-QLKVLSLP-NCNLG 117
L +N F G++ +L+N S+ + LS + L I + L + +L+ L L N G
Sbjct: 398 LQNNGFTGKIPP--TLSNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 118 AIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGF--QLTSAQHG 175
IP L+ L+ L L N L G P+ L N T L + L NN +G +
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQL 235
L L +S+NSF+G +P + L++++++ N F G IP+++ K G +A +
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 236 WALYLHNDNFSRKIKDGL-------LRSTELEDL-------------------------- 262
+ +Y+ ND ++ +RS +L L
Sbjct: 572 Y-VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 263 ----DISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318
D+S N+LSG+IP +G+ +L L++ +N + G+IP + +L GL I D+S N L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 319 GSMISTLN-LSSVACLYLQNNAL 340
G + ++ L+ + + L NN L
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNL 713
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 166/348 (47%), Gaps = 27/348 (7%)
Query: 7 LFELNFGGNKFEGHL--PQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR 64
L L GNK G + +C+N L+ LDVSSN S +P + + ++L++L + N+
Sbjct: 177 LKHLAISGNKISGDVDVSRCVN----LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 231
Query: 65 FKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLP-NCNLGAIPNFL 123
G +S A + E L++ ++ I LP L+ LSL N G IP+FL
Sbjct: 232 LSGD----FSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFL 286
Query: 124 LLQFN-LKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG---FQLTSAQHGLLSL 179
+ L LDLS N G P + + L NN FSG GL L
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVL 345
Query: 180 DISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALY 239
D+S N F+GELP+++ + L+ +++S N+F G I + L N Q LY
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------LPNLCQNPKNTLQ--ELY 397
Query: 240 LHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPV 299
L N+ F+ KI L +EL L +S N LSG IPS +G+ S L L + N LEG IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 300 QCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFVK 346
+ + L + N+L+G + S L N +++ + L NN L K
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 141/346 (40%), Gaps = 66/346 (19%)
Query: 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
L EL N F G +P L+N + L L +S N LSG +PS + +L+ L L L+ N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 67 GRLFSFYSLANLSKFEAFQLSME--TDLLQVEIENCLPTFQLKVLSLPNCNL-GAIPNFL 123
G + L + E L T + + NC L +SL N L G IP ++
Sbjct: 453 GEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSNCT---NLNWISLSNNRLTGEIPKWI 507
Query: 124 LLQFNLKYLDLSHNKLAGNFPTWL--------LENNTKL--------------------- 154
NL L LS+N +GN P L L+ NT L
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 155 ---ELLYLVNNSFSG----------FQ-LTSAQHGLLS----LDISSNSFTGELPQNMDI 196
+Y+ N+ FQ + S Q LS +I+S + G D
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 197 VLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRS 256
++++++S N G IP IG M L+ L L +++ S I D +
Sbjct: 628 N-GSMMFLDMSYNMLSGYIPKEIGSMP----------YLFILNLGHNDISGSIPDEVGDL 676
Query: 257 TELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQ 302
L LD+S+N L G IP M + L + +SNN+L G IP Q
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 111/266 (41%), Gaps = 66/266 (24%)
Query: 129 LKYLDLSHNKLAG-NFPTWLLENNT-KLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSF 186
L+ LDLS N ++G N W+L + +L+ L + N SG S L LD+SSN+F
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 209
Query: 187 TGELP--------QNMDI--------------VLPKLVYMNVSKNSFEGNIPSSIGKMQG 224
+ +P Q++DI +L +N+S N F G IP
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------- 262
Query: 225 LLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTE-LEDLDISNNILSGHIPSWMG----- 278
+ + L L L + F+ +I D L + + L LD+S N G +P + G
Sbjct: 263 -----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 279 --------NFS------------HLHTLSMSNNHLEGNIPVQCQNL-AGLYIPDISENNL 317
NFS L L +S N G +P NL A L D+S NN
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 318 SGSMISTL---NLSSVACLYLQNNAL 340
SG ++ L +++ LYLQNN
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGF 403
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
I + LF LN G N G +P + +L L +LD+SSNKL G +P ++ LT L + L
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 61 YDNRFKGRLFSFYSLANLSKFEAF 84
+N G + + +FE F
Sbjct: 709 SNNNLSG------PIPEMGQFETF 726
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 47/233 (20%)
Query: 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRF 65
NL ++ N+ G +P+ + L +L +L +S+N SG +P+ + + SL +L L N F
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 66 KGRLFS--FYSLANLSK-FEAFQ--LSMETDLLQVEIENC--------LPTFQLKVLSLP 112
G + + F ++ F A + + ++ D ++ E + + QL LS
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 113 N-CNL------------------------------GAIPNFLLLQFNLKYLDLSHNKLAG 141
N CN+ G IP + L L+L HN ++G
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 142 NFPTWLLENNTKLELLYLVNNSFSGF--QLTSAQHGLLSLDISSNSFTGELPQ 192
+ P + + L +L L +N G Q SA L +D+S+N+ +G +P+
Sbjct: 668 SIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 171/364 (46%), Gaps = 43/364 (11%)
Query: 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
L L+ GNK G + ++ T LK+L++SSN+ G +P + L SL+YL+L +N+F
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282
Query: 67 GRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTF------QLKVLSLPNCNLGAIP 120
G + F S A DL +P F + N G +P
Sbjct: 283 GEIPDFLS-------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 121 NFLLLQFN-LKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS----AQHG 175
LL+ LK LDLS N+ +G P L + L L L +N+FSG L + ++
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGL--LATYMNMT 233
L L + +N FTG++P + +LV +++S N G IPSS+G + L L ++NM
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 234 Q------------LWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFS 281
+ L L L ++ + +I GL T L + +SNN L+G IP W+G
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 282 HLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALG 341
+L L +SNN GNIP + + L D++ N +G++ A ++ Q+ +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI--------PAAMFKQSGKIA 566
Query: 342 DRFV 345
F+
Sbjct: 567 ANFI 570
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 185/383 (48%), Gaps = 52/383 (13%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLT-HLKVLDVSSNKLSG-ILPSVIANLT-SLEYLA 59
+++ L L+ N+F G LP+ L NL+ L LD+SSN SG ILP++ N +L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 60 LYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTF-QLKVLSLP-NCNLG 117
L +N F G++ +L+N S+ + LS + L I + L + +L+ L L N G
Sbjct: 401 LQNNGFTGKIPP--TLSNCSELVSLHLSF--NYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 118 AIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG--FQLTSAQHG 175
IP L+ L+ L L N L G P+ L N T L + L NN +G +
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQL 235
L L +S+NSF+G +P + L++++++ N F G IP+++ K G +A +
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 236 WALYLHNDNFSRKIKDGL-------LRSTELEDL-------------------------- 262
+ +Y+ ND ++ +RS +L L
Sbjct: 575 Y-VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 263 ----DISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318
D+S N+LSG+IP +G+ +L L++ +N + G+IP + +L GL I D+S N L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 319 GSMISTLN-LSSVACLYLQNNAL 340
G + ++ L+ + + L NN L
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNL 716
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 166/348 (47%), Gaps = 27/348 (7%)
Query: 7 LFELNFGGNKFEGHL--PQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR 64
L L GNK G + +C+N L+ LDVSSN S +P + + ++L++L + N+
Sbjct: 180 LKHLAISGNKISGDVDVSRCVN----LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234
Query: 65 FKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLP-NCNLGAIPNFL 123
G +S A + E L++ ++ I LP L+ LSL N G IP+FL
Sbjct: 235 LSGD----FSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFL 289
Query: 124 LLQFN-LKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG---FQLTSAQHGLLSL 179
+ L LDLS N G P + + L NN FSG GL L
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVL 348
Query: 180 DISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALY 239
D+S N F+GELP+++ + L+ +++S N+F G I + L N Q LY
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------LPNLCQNPKNTLQ--ELY 400
Query: 240 LHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPV 299
L N+ F+ KI L +EL L +S N LSG IPS +G+ S L L + N LEG IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 300 QCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFVK 346
+ + L + N+L+G + S L N +++ + L NN L K
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 141/346 (40%), Gaps = 66/346 (19%)
Query: 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
L EL N F G +P L+N + L L +S N LSG +PS + +L+ L L L+ N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 67 GRLFSFYSLANLSKFEAFQLSME--TDLLQVEIENCLPTFQLKVLSLPNCNL-GAIPNFL 123
G + L + E L T + + NC L +SL N L G IP ++
Sbjct: 456 GEIPQ--ELMYVKTLETLILDFNDLTGEIPSGLSNCT---NLNWISLSNNRLTGEIPKWI 510
Query: 124 LLQFNLKYLDLSHNKLAGNFPTWL--------LENNTKL--------------------- 154
NL L LS+N +GN P L L+ NT L
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 155 ---ELLYLVNNSFSG----------FQ-LTSAQHGLLS----LDISSNSFTGELPQNMDI 196
+Y+ N+ FQ + S Q LS +I+S + G D
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 197 VLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRS 256
++++++S N G IP IG M L+ L L +++ S I D +
Sbjct: 631 N-GSMMFLDMSYNMLSGYIPKEIGSMP----------YLFILNLGHNDISGSIPDEVGDL 679
Query: 257 TELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQ 302
L LD+S+N L G IP M + L + +SNN+L G IP Q
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 111/266 (41%), Gaps = 66/266 (24%)
Query: 129 LKYLDLSHNKLAG-NFPTWLLENNT-KLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSF 186
L+ LDLS N ++G N W+L + +L+ L + N SG S L LD+SSN+F
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 212
Query: 187 TGELP--------QNMDI--------------VLPKLVYMNVSKNSFEGNIPSSIGKMQG 224
+ +P Q++DI +L +N+S N F G IP
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------- 265
Query: 225 LLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTE-LEDLDISNNILSGHIPSWMG----- 278
+ + L L L + F+ +I D L + + L LD+S N G +P + G
Sbjct: 266 -----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 279 --------NFS------------HLHTLSMSNNHLEGNIPVQCQNL-AGLYIPDISENNL 317
NFS L L +S N G +P NL A L D+S NN
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 318 SGSMISTL---NLSSVACLYLQNNAL 340
SG ++ L +++ LYLQNN
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGF 406
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
I + LF LN G N G +P + +L L +LD+SSNKL G +P ++ LT L + L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 61 YDNRFKGRLFSFYSLANLSKFEAF 84
+N G + + +FE F
Sbjct: 712 SNNNLSG------PIPEMGQFETF 729
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 47/233 (20%)
Query: 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRF 65
NL ++ N+ G +P+ + L +L +L +S+N SG +P+ + + SL +L L N F
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 66 KGRLFS--FYSLANLSK-FEAFQ--LSMETDLLQVEIENC--------LPTFQLKVLSLP 112
G + + F ++ F A + + ++ D ++ E + + QL LS
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 113 N-CNL------------------------------GAIPNFLLLQFNLKYLDLSHNKLAG 141
N CN+ G IP + L L+L HN ++G
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 142 NFPTWLLENNTKLELLYLVNNSFSGF--QLTSAQHGLLSLDISSNSFTGELPQ 192
+ P + + L +L L +N G Q SA L +D+S+N+ +G +P+
Sbjct: 671 SIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 105 QLKVLSLPNCNL-GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS 163
QL L + + N+ GAIP+FL L LD S+N L+G P + L LV +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS------LPNLVGIT 155
Query: 164 FSGFQLTSA---QHG-----LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNI 215
F G +++ A +G S+ IS N TG++P + L ++++S+N EG+
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDA 213
Query: 216 PSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPS 275
G + ++ L A L K GL S L LD+ NN + G +P
Sbjct: 214 SVLFGSDKNTQKIHLAKNSL-AFDLG--------KVGL--SKNLNGLDLRNNRIYGTLPQ 262
Query: 276 WMGNFSHLHTLSMSNNHLEGNIP 298
+ LH+L++S N+L G IP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP 285
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 95/225 (42%), Gaps = 32/225 (14%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
I +L L L G +P L+ + L LD S N LSG LP I++L +L +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP 120
NR G + Y + SK +++ + L +I PTF
Sbjct: 157 DGNRISGAIPDSY--GSFSKLFT-SMTISRNRLTGKIP---PTFA--------------- 195
Query: 121 NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSA--QHGLLS 178
NL ++DLS N L G+ + L ++ + ++L NS + F L L
Sbjct: 196 -----NLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLNG 248
Query: 179 LDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQ 223
LD+ +N G LPQ + L L +NVS N+ G IP G +Q
Sbjct: 249 LDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 198 LPKLVYMNVSK-NSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRS 256
LP L ++ + N+ G IP +I K+ TQL LY+ + N S I D L +
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKL----------TQLHYLYITHTNVSGAIPDFLSQI 124
Query: 257 TELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIP-DISEN 315
L LD S N LSG +P + + +L ++ N + G IP + + L+ IS N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 316 NLSGSMISTLNLSSVACLYLQNNAL-GDRFV 345
L+G + T ++A + L N L GD V
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 94/229 (41%), Gaps = 41/229 (17%)
Query: 128 NLKYLDLSH----NKLAGNFPTWLLENNTKLELLYLVNNSFSGF--QLTSAQHGLLSLDI 181
NL YL+ + N L G P + + T+L LY+ + + SG S L++LD
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 182 SSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLH 241
S N+ +G LP ++ LP LV + N G IP S G L + +MT +
Sbjct: 133 SYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKL---FTSMT------IS 182
Query: 242 NDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGN---------------------- 279
+ + KI + L +D+S N+L G G+
Sbjct: 183 RNRLTGKIPP-TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 280 -FSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNL 327
+L+ L + NN + G +P L L+ ++S NNL G + NL
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L +L +LNF N+ P L NLT L+ LD+SSNK+S I SV+A LT+LE L +N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 64 RF 65
+
Sbjct: 206 QI 207
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 140/340 (41%), Gaps = 40/340 (11%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L N+ P L NLT+L L++SSN +S I S ++ LTSL+ L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNF 158
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP 120
N+ LANL+ E +S +I L+ L N + I
Sbjct: 159 SSNQVT----DLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDIT 211
Query: 121 NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLD 180
+L NL L L+ N+L L + T L L L NN S S L L
Sbjct: 212 PLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Query: 181 ISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMN--------- 231
+ +N + P L L + +++N E P S K L Y N
Sbjct: 268 LGANQISNISPL---AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 324
Query: 232 -MTQLWALYLHNDNFSRKIKD--GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSM 288
+T+L L+ +N+ K+ D L T + L +N +S P + N + + L +
Sbjct: 325 SLTKLQRLFFYNN----KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Query: 289 SNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLS 328
N+ N PV + A + IP+ + N++G++I+ +S
Sbjct: 379 -NDQAWTNAPVNYK--ANVSIPNTVK-NVTGALIAPATIS 414
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L +L +L+F N+ P L NLT L+ LD+SSNK+S I SV+A LT+LE L +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 64 RF 65
+
Sbjct: 206 QI 207
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L N+ P L NLT+L L++SSN +S I S ++ LTSL+ L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF 158
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLS 87
N+ LANL+ E +S
Sbjct: 159 SSNQVT----DLKPLANLTTLERLDIS 181
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 128 NLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFT 187
NL L L +N++ P L+N T L L L +N+ S S L L SSN T
Sbjct: 108 NLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 188 GELPQNMDIVLPKLVYMNVSKNSFEG-NIPSSIGKMQGLLATYMNMTQLWAL-YLHN-DN 244
P L L +++S N ++ + + ++ L+AT ++ + L L N D
Sbjct: 165 DLKPL---ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 245 FS---RKIKD-GLLRS-TELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPV 299
S ++KD G L S T L DLD++NN +S P + + L L + N + P
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 278
Query: 300 QCQNLAGL 307
LAGL
Sbjct: 279 ----LAGL 282
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L +L +L+F N+ P L NLT L+ LD+SSNK+S I SV+A LT+LE L +N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 64 RF 65
+
Sbjct: 206 QI 207
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 141/340 (41%), Gaps = 40/340 (11%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L N+ P L NLT+L L++SSN +S I S ++ LTSL+ L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF 158
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP 120
N+ LANL+ E +S +I L+ L N + I
Sbjct: 159 SSNQVT----DLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDIT 211
Query: 121 NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLD 180
+L NL L L+ N+L L + T L L L NN S S L L
Sbjct: 212 PLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 267
Query: 181 ISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMN--------- 231
+ +N + P L L + +++N E P S K L Y N
Sbjct: 268 LGANQISNISPL---AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 324
Query: 232 -MTQLWALYLHNDNFSRKIKD--GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSM 288
+T+L L+ +N+ K+ D L T + L +N +S P + N + + L +
Sbjct: 325 SLTKLQRLFFYNN----KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
Query: 289 SNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLS 328
N+ N PV + A + IP+ + N++G++I+ +S
Sbjct: 379 -NDQAWTNAPVNYK--ANVSIPNTVK-NVTGALIAPATIS 414
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L +L +LNFG N+ P L NLT L+ LD+SSNK+S I SV+A LT+LE L +N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 204
Query: 64 RF 65
+
Sbjct: 205 QI 206
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L N+ P L NLT+L L++SSN +S I S ++ LTSL+ L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQL-- 156
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLS 87
F ++ LANL+ E +S
Sbjct: 157 ---NFGNQVTDLKPLANLTTLERLDIS 180
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L +L +LNFG N+ P L NLT L+ LD+SSNK+S I SV+A LT+LE L +N
Sbjct: 150 LTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 204
Query: 64 RF 65
+
Sbjct: 205 QI 206
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 141/340 (41%), Gaps = 41/340 (12%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L N+ P L NLT+L L++SSN +S I S ++ LTSL+ L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQL-- 156
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP 120
F ++ LANL+ E +S +I L+ L N + I
Sbjct: 157 ---NFGNQVTDLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDIT 210
Query: 121 NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLD 180
+L NL L L+ N+L L + T L L L NN S S L L
Sbjct: 211 PLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 266
Query: 181 ISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMN--------- 231
+ +N + P L L + +++N E P S K L Y N
Sbjct: 267 LGANQISNISPL---AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 323
Query: 232 -MTQLWALYLHNDNFSRKIKD--GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSM 288
+T+L L+ +N+ K+ D L T + L +N +S P + N + + L +
Sbjct: 324 SLTKLQRLFFYNN----KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
Query: 289 SNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLS 328
N+ N PV + A + IP+ + N++G++I+ +S
Sbjct: 378 -NDQAWTNAPVNYK--ANVSIPNTVK-NVTGALIAPATIS 413
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
EL NL L GN+ + + LT+LK L + N+L + V LT+L YL LY
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 63 NRFKGRLFS-FYSLANLSKFEAFQLSMETDLLQVEIENCLPTF-QLKVLSLPNCNLGAIP 120
N+ + F L NL++ L ++ + LQ E QLK LSL + L ++P
Sbjct: 143 NQLQSLPKGVFDKLTNLTR-----LDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Query: 121 N 121
+
Sbjct: 198 D 198
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L NL L+ N+ + + LT LK L ++ N+L + V LTSL ++ L +
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
Query: 63 NRF 65
N +
Sbjct: 215 NPW 217
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L NL EL N+ + P+ ++LT L L + N+L + V LTSL+ L LY+
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 63 NRFK 66
N+ K
Sbjct: 167 NQLK 170
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 23/189 (12%)
Query: 116 LGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQ--LTSAQ 173
L AIP+ + + K LDL NKL+ + P+ TKL LLYL +N +
Sbjct: 28 LTAIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 174 HGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPS-----------SIG-- 220
L +L ++ N LP + L L + + +N + P S+G
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 221 KMQGL-LATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGN 279
++Q L + +T L L L+N+ R + + TEL+ L + NN L +P G
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE--GA 200
Query: 280 FSHLHTLSM 288
F L L M
Sbjct: 201 FDSLEKLKM 209
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
ELKNL L NK + + L +L L + N+L + P V +LT L YL+L
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 7/159 (4%)
Query: 9 ELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG- 67
+L+ NK + + LT L++L ++ NKL + + L +LE L + DN+ +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 68 RLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF 127
+ F L NL++ + +++ L + + L +L LSL L ++P + +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKS--LPPRVFDSL--TKLTYLSLGYNELQSLPKGVFDKL 156
Query: 128 -NLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165
+LK L L +N+L P + T+L+ L L NN
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 32/196 (16%)
Query: 32 KVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFS-FYSLANLS-------KFEA 83
K LD+ SNKLS + LT L L L DN+ + F L NL K +A
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNF 143
+ + L+ + E L QLK SLP P L YL L +N+L +
Sbjct: 100 LPIGVFDQLVNL-AELRLDRNQLK--SLP-------PRVFDSLTKLTYLSLGYNELQ-SL 148
Query: 144 PTWLLENNTKLELLYLVNNSFSGFQLTSAQHG-------LLSLDISSNSFTGELPQNMDI 196
P + + T L+ L L NN QL G L +L + +N +P+
Sbjct: 149 PKGVFDKLTSLKELRLYNN-----QLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202
Query: 197 VLPKLVYMNVSKNSFE 212
L KL + + +N ++
Sbjct: 203 SLEKLKMLQLQENPWD 218
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 30/193 (15%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L NL +L+ NK L +L +LK L+V N L I + L SLE L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 64 RFKG---------------RLFSF-------YSLANLSKFEAFQLSMETDLLQVEIENCL 101
RL YS L + + ++S L NCL
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS-HWPYLDTMTPNCL 221
Query: 102 PTFQLKVLSLPNCNLGAIPNFLLLQF-NLKYLDLSHNKLAGNFPTWLLENNTKLELLYLV 160
L LS+ +CNL A+P + L++L+LS+N P +E + ELL L
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN------PISTIEGSMLHELLRLQ 275
Query: 161 NNSFSGFQLTSAQ 173
G QL +
Sbjct: 276 EIQLVGGQLAVVE 288
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRF 65
+L EL N P NNL +L+ L + SN+L I V L++L L + +N+
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 66 KGRL-FSFYSLANLSKFEA----------FQLSMETDLLQVEIENC----LPTFQLK--- 107
L + F L NL E S L Q+ +E C +PT L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 108 ---VLSLPNCNLGAIPNFLLLQ-FNLKYLDLSH 136
VL L + N+ AI ++ + + LK L++SH
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 259 LEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQC-QNLAGLYIPDISENNL 317
LE+L+++ NI+S P N +L TL + +N L+ IP+ L+ L DISEN +
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKI 116
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L NL EL+ N+ + + LT LK L + N+L + V LTSL+Y+ L+D
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
Query: 63 NRF 65
N +
Sbjct: 215 NPW 217
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L NL LN N+ + + LT+L LD+S N+L + V LT L+ L LY
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 63 NRFK 66
N+ K
Sbjct: 191 NQLK 194
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
EL NL L GN+ + + LT+LK L + N+L + V LT+L YL L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 63 NRFKGRLFS-FYSLANLSKFEAFQLSMETDLLQVEIENCLPTF-QLKVLSLPNCNLGAIP 120
N+ + F L NL+ +L + + LQ E QLK L L L ++P
Sbjct: 143 NQLQSLPKGVFDKLTNLT-----ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 121 NFLLLQF-NLKYLDLSHNKLAGNFP 144
+ + + +L+Y+ L N P
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L +L +L+FG N+ P L NLT L+ LD+SSNK+S I SV+A LT+LE L +N
Sbjct: 154 LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 208
Query: 64 RF 65
+
Sbjct: 209 QI 210
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L N+ P L NLT+L L++SSN +S I S ++ LTSL+ L+
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLS- 161
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLS 87
F ++ LANL+ E +S
Sbjct: 162 ----FGNQVTDLKPLANLTTLERLDIS 184
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L +L +L+FG N+ P L NLT L+ LD+SSNK+S I SV+A LT+LE L +N
Sbjct: 155 LTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209
Query: 64 RF 65
+
Sbjct: 210 QI 211
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 142/340 (41%), Gaps = 41/340 (12%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L N+ P L NLT+L L++SSN +S I S ++ LTSL+ L+
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLS- 162
Query: 61 YDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP 120
F ++ LANL+ E +S +I L+ L N + I
Sbjct: 163 ----FGNQVTDLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDIT 215
Query: 121 NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLD 180
+L NL L L+ N+L L + T L L L NN S S L L
Sbjct: 216 PLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271
Query: 181 ISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMN--------- 231
+ +N + P L L + +++N E P S K L Y N
Sbjct: 272 LGANQISNISPL---AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 328
Query: 232 -MTQLWALYLHNDNFSRKIKD--GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSM 288
+T+L L+ +N+ K+ D L T + L +N +S P + N + + L +
Sbjct: 329 SLTKLQRLFFYNN----KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
Query: 289 SNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLS 328
N+ N PV + A + IP+ + N++G++I+ +S
Sbjct: 383 -NDQAWTNAPVNYK--ANVSIPNTVK-NVTGALIAPATIS 418
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
EL+NL L+ + E P N+L+ L+VL+++SN+L + + LTSL+ + L+
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527
Query: 63 N 63
N
Sbjct: 528 N 528
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 4 LKNLFELNFGGNKF-EGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L +L L GN F E LP L +L LD+S +L + P+ +L+SL+ L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 63 NRFK 66
N+ K
Sbjct: 504 NQLK 507
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----V 108
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 109 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 144 PT 145
T
Sbjct: 166 CT 167
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 6 NLFELNF------GGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLA 59
N+F+ +F GN LP + NL++L+VLD+S N+L+ LP+ + + L+Y
Sbjct: 242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFY 299
Query: 60 LYDNRFKGRLFSFYSLANL 78
+DN + F +L NL
Sbjct: 300 FFDNMVTTLPWEFGNLCNL 318
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
EL +L +L GGNK + N LT L L++S+N+L + V LT L+ LAL
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 63 NRFK 66
N+ +
Sbjct: 110 NQLQ 113
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L L EL N+ + + LT LK L + N+L + V LTSL+Y+ L+D
Sbjct: 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157
Query: 63 NRF 65
N +
Sbjct: 158 NPW 160
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L +L LN N+ + + LT LK L +++N+L + V LT L+ L LY
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 63 NRFK 66
N+ K
Sbjct: 134 NQLK 137
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 64/351 (18%)
Query: 15 NKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK--GRLFSF 72
N EG L +L HL D+S N LS + S L+SL+YL L N ++ G F
Sbjct: 63 NTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 73 YSLANLSKFEAFQLSMETDLLQVEIE--NCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLK 130
+L NL + +++ +++ L ++K LSL N ++ +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI-------- 171
Query: 131 YLDLSHNKLAGNFPTWLLENN----TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSF 186
D+ H L + +LLE + + L L + + + FQ + +S + +F
Sbjct: 172 -RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 187 TGEL--PQNMDIVLPKLVY-MNVSKNSF--------------EGNIPSSIGKMQGLLATY 229
G + ++ + +L L Y + +S+ F E ++ S +GK++ +
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 230 MNMTQLWALYLHNDNFS--RKIKDGLLRSTE--------------LEDLDISNNILSGHI 273
+++ Q + Y + +S K+K + +++ LE LD+S N++
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 274 ---PSWMGNFSHLHTLSMSNNHLE-----GNIPVQCQNLAGLYIPDISENN 316
+ G + L TL +S NHL G I + +NL L DIS N
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL---DISRNT 398
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 64/351 (18%)
Query: 15 NKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK--GRLFSF 72
N EG L +L HL D+S N LS + S L+SL+YL L N ++ G F
Sbjct: 89 NTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 73 YSLANLSKFEAFQLSMETDLLQVEIE--NCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLK 130
+L NL + +++ +++ L ++K LSL N ++ +
Sbjct: 146 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI-------- 197
Query: 131 YLDLSHNKLAGNFPTWLLENN----TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSF 186
D+ H L + +LLE + + L L + + + FQ + +S + +F
Sbjct: 198 -RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 256
Query: 187 TGEL--PQNMDIVLPKLVY-MNVSKNSF--------------EGNIPSSIGKMQGLLATY 229
G + ++ + +L L Y + +S+ F E ++ S +GK++ +
Sbjct: 257 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 316
Query: 230 MNMTQLWALYLHNDNFS--RKIKDGLLRSTE--------------LEDLDISNNILSGHI 273
+++ Q + Y + +S K+K + +++ LE LD+S N++
Sbjct: 317 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 376
Query: 274 ---PSWMGNFSHLHTLSMSNNHLE-----GNIPVQCQNLAGLYIPDISENN 316
+ G + L TL +S NHL G I + +NL L DIS N
Sbjct: 377 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL---DISRNT 424
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR 64
+++ EL GN+F +P+ L+N HL ++D+S+N++S + +N+T L L L NR
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 65 FK 66
+
Sbjct: 90 LR 91
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
K+L ++ N+ Q +N+T L L +S N+L I P L SL L+L+ N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 21 LPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
+P+ + +L L+ L+V+SN+L + V LTSL+Y+ L+DN
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L+NL + FG NK + LK L+++SN+L + + LTSL+ + L+
Sbjct: 168 DLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHT 227
Query: 63 N 63
N
Sbjct: 228 N 228
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 51/307 (16%)
Query: 1 ICELKNLFE-LNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLA 59
+ +L L E L N+ E LP+ L N + LK++DV +N L LP + SLE++A
Sbjct: 126 LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPDLPP---SLEFIA 179
Query: 60 LYDNRFKGR--------LFSFYSLAN-LSKFEAFQLSMETDLLQVEIENCLPTFQ----L 106
+N+ + L + Y+ N L K LS+E+ + I LP Q L
Sbjct: 180 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239
Query: 107 KVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG 166
+ N L +P+ L +L+ L++ N L T L E L L + N FSG
Sbjct: 240 TTIYADNNLLKTLPD---LPPSLEALNVRDNYL-----TDLPELPQSLTFLDVSENIFSG 291
Query: 167 FQLTSAQHGLLSLDISSNSFTG--ELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQG 224
L+ L L+ SSN +LP P L +NVS N +P+ +++
Sbjct: 292 --LSELPPNLYYLNASSNEIRSLCDLP-------PSLEELNVSNNKL-IELPALPPRLER 341
Query: 225 LLATYMNMTQLWAL-----YLHND-NFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMG 278
L+A++ ++ ++ L LH + N R+ D +EDL +++++ +P
Sbjct: 342 LIASFNHLAEVPELPQNLKQLHVEYNPLREFPDI---PESVEDLRMNSHL--AEVPELPQ 396
Query: 279 NFSHLHT 285
N LH
Sbjct: 397 NLKQLHV 403
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L NL +L F NK + LT L LD++ N L I NL SL ++ LY+
Sbjct: 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Query: 63 NRFKGRLFSFYSLAN 77
N + L N
Sbjct: 115 NPWDCECRDIMYLRN 129
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 22 PQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
P ++L +L+ L +SNKL+ I V LT L L L DN K
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 26 NNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAF 84
N L +L L++ N+L+ I L+ L+ L L +N + ++F + +L + +
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
Query: 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFP 144
+L + + + E L+ L+L CNL IPN L L LDLS N L+ P
Sbjct: 169 ELKRLSYISEGAFEG---LSNLRYLNLAMCNLREIPNLTPL-IKLDELDLSGNHLSAIRP 224
Query: 145 T-----------WLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQN 193
W++++ ++ + N+F Q L+ ++++ N+ T LP +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQV----IERNAFDNLQ------SLVEINLAHNNLT-LLPHD 273
Query: 194 MDIVLPKLVYMNVSKNSFEGN 214
+ L L +++ N + N
Sbjct: 274 LFTPLHHLERIHLHHNPWNCN 294
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 41/236 (17%)
Query: 10 LNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR----- 64
LN N + +L HL++L +S N + I L SL L L+DNR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 65 -----FKGRL---------------FSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTF 104
+ +L ++F + +L + + +L + + E +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--- 156
Query: 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKL----AGNFPTWLLENNTKLELLYLV 160
L+ L+L CNL IPN L L+ L+LS N+L G+F + T L L+L+
Sbjct: 157 NLRYLNLGMCNLKDIPNLTAL-VRLEELELSGNRLDLIRPGSF-----QGLTSLRKLWLM 210
Query: 161 NNSFSGFQLTSAQ--HGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGN 214
+ + + + L L++S N+ LP ++ L +L ++++ N + N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNPWHCN 265
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----V 110
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 111 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Query: 144 PT 145
T
Sbjct: 168 CT 169
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----V 109
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 110 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Query: 144 PT 145
T
Sbjct: 167 CT 168
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----V 108
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 109 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 144 PT 145
T
Sbjct: 166 CT 167
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----V 132
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 133 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189
Query: 144 PT 145
T
Sbjct: 190 CT 191
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 4 LKNLFELNFGGNKF-EGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L +L L GN F E LP L +L LD+S +L + P+ +L+SL+ L +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 63 NRF 65
N F
Sbjct: 528 NNF 530
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 125/317 (39%), Gaps = 38/317 (11%)
Query: 49 IANLTSLEY-LALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLK 107
+ NLT E+ LA D G + F L N+S F +++E +++ F +
Sbjct: 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE------RVKDFSYNFGWQ 331
Query: 108 VLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN--SFS 165
L L NC G P L +LK L + NK F L + LE L L N SF
Sbjct: 332 HLELVNCKFGQFPTLKLK--SLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFK 386
Query: 166 GFQLTSAQHGLLSLDISSNSFTGELPQNMDIV-LPKLVYMNVSKN------------SFE 212
G + + G +SL SF G + + + + L +L +++ + S
Sbjct: 387 GC-CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445
Query: 213 GNIPSSIGKMQGLLA---TYMNMTQLWALYLHNDNFSRK-IKDGLLRSTELEDLDISNNI 268
I I +A + ++ L L + ++F + D L LD+S
Sbjct: 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505
Query: 269 LSGHIPSWMGNFSHLHTLSMSNNHLEG--NIPVQCQNLAGLYIPDISENNLSGSMISTLN 326
L P+ + S L L+MS+N+ P +C N L + D S N++ S L
Sbjct: 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQELQ 563
Query: 327 --LSSVACLYLQNNALG 341
SS+A L L N
Sbjct: 564 HFPSSLAFLNLTQNDFA 580
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 54 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----V 109
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 110 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Query: 144 PT 145
T
Sbjct: 167 CT 168
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----L 110
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 111 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Query: 144 PT 145
T
Sbjct: 168 CT 169
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 7 LFELNFGGNKFEGHLPQ-CLNNLTHLKVLDV------SSNKLSGILPSVIANLTSL---E 56
L EL GN ++ + CL NL L V + L PS++ L + E
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 57 YLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNL 116
+ Y N F + F+ LAN+S +S++ +E+ F+ + LS+ C L
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY------LEDVPKHFKWQSLSIIRCQL 319
Query: 117 GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLEL 156
P L L F LK L L+ NK + +F L + + L+L
Sbjct: 320 KQFPT-LDLPF-LKSLTLTMNKGSISFKKVALPSLSYLDL 357
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1 ICELKNLFELNFGGNKFEG-HLPQCLNNLTHLKVLDVSSNKLSGI 44
I LK L ELN N + LP+ +NLT+L+ LD+SSNK+ I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSM 88
L+VLD+S ++ I +L+ L L L N + L +F L++L K A +
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA----V 108
Query: 89 ETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQF-----NLKYLDLSHNKLAGNF 143
ET+L +EN P LK L N I +F L ++ NL++LDLS NK+ +
Sbjct: 109 ETNL--ASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 144 PTWL 147
T L
Sbjct: 166 CTDL 169
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 4 LKNLFELNFGGNKF-EGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L +L L GN F E LP L +L LD+S +L + P+ +L+SL+ L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 63 NRF 65
N F
Sbjct: 504 NNF 506
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 7 LFELNFGGNKFEGHLPQ-CLNNLTHLKVLDV------SSNKLSGILPSVIANLTSL---E 56
L EL GN ++ + CL NL L V + L PS++ L + E
Sbjct: 201 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 260
Query: 57 YLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNL 116
+ Y N F + F+ LAN+S +S++ +E+ F+ + LS+ C L
Sbjct: 261 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY------LEDVPKHFKWQSLSIIRCQL 314
Query: 117 GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLEL 156
P L L F LK L L+ NK + +F L + + L+L
Sbjct: 315 KQFPT-LDLPF-LKSLTLTMNKGSISFKKVALPSLSYLDL 352
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 38/191 (19%)
Query: 2 CELKNLFELNFGGNKFEGHLPQCLNNLTHLKV--------LDVSSNKLSGILPSVIANLT 53
C + EL+ NK L NN+T L + LD SSNKL+ I ++T
Sbjct: 177 CSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI------DVT 230
Query: 54 SLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEI-----------ENCLP 102
L L +D + ++ LSK ++TDLL++++ E C
Sbjct: 231 PLTQLTYFDCSVNP--LTELDVSTLSKLTTLH-CIQTDLLEIDLTHNTQLIYFQAEGCRK 287
Query: 103 TFQLKV-----LSLPNCNLGAIPNFLLLQ-FNLKYLDLSHNKLAGNFPTWLLENNTKLEL 156
+L V L L +C I L Q L YL L++ +L + +NTKL+
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE----LDVSHNTKLKS 343
Query: 157 LYLVNNSFSGF 167
L VN F
Sbjct: 344 LSCVNAHIQDF 354
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 41/236 (17%)
Query: 10 LNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR----- 64
LN N + +L HL++L +S N + I L SL L L+DNR
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 65 -----FKGRL---------------FSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTF 104
+ +L ++F + +L + + +L + + E +
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--- 156
Query: 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKL----AGNFPTWLLENNTKLELLYLV 160
L+ L+L CNL IPN L L+ L+LS N+L G+F + T L L+L+
Sbjct: 157 NLRYLNLGMCNLKDIPNLTAL-VRLEELELSGNRLDLIRPGSF-----QGLTSLRKLWLM 210
Query: 161 NNSFSGFQLTSAQ--HGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGN 214
+ + + + L L++S N+ LP ++ L +L ++++ N + N
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNPWHCN 265
>pdb|1OY5|A Chain A, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|B Chain B, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
pdb|1OY5|C Chain C, Crystal Structure Of Trna (M1g37) Methyltransferase From
Aquifex Aeolicus
Length = 257
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 223 QGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRS-TELEDLDISNNILSGH-IPSWMGNF 280
+ LL+ + + +LW L+ +N +K D + + TELE DI N+ILSG W+
Sbjct: 195 EELLSGHHKLIELWKLWHRIENTVKKRPDLIPKDLTELEK-DILNSILSGKSFKEWLKEH 253
Query: 281 SHL 283
HL
Sbjct: 254 KHL 256
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 4 LKNLFELNFGGNKF-EGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L +L L GN F E LP L +L LD+S +L + P+ +L+SL+ L +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 63 NRF 65
N F
Sbjct: 209 NNF 211
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR 64
K+L LN N + +CL +KVLD+ SNK+ I P + L +L+ L + N+
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQ 455
Query: 65 FKG 67
K
Sbjct: 456 LKS 458
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 10 LNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L+ NK + +P+ + L L+ L+V+SN+L + + LTSL+ + L+ N
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L L L+ G N+ + L HLK L + NKL+ LP I LT L +LAL N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQN 145
Query: 64 RFK 66
+ K
Sbjct: 146 QLK 148
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 4 LKNLFELNFGGNKFEGHLP-QCLNNLTHLKVLDVSSNKLSGILPSVI 49
L NL EL G N+ G LP ++LT L VLD+ +N+L+ +LPS +
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L +L EL NK LP+ + LTHL L + N+L I L+SL + L+
Sbjct: 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168
Query: 63 NRFKGRLFSFYSLAN 77
N + L N
Sbjct: 169 NPWDCECRDIMYLRN 183
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 54/236 (22%)
Query: 19 GHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANL 78
LP L L+ LK L +S+NK + +N SL +L++ N + L + L NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-GCLENL 349
Query: 79 SKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNK 138
LS + +E +C QL+ LS +L+ L+LS+N+
Sbjct: 350 ENLRELDLSHD----DIETSDCC-NLQLRNLS-----------------HLQSLNLSYNE 387
Query: 139 LAGNFPTWLLENNTKLELLYL------VNNSFSGFQ------LTSAQHGLLSLDISSNS- 185
+ T + +LELL L V ++ S FQ + + H L LDISS
Sbjct: 388 -PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL--LDISSEQL 444
Query: 186 FTGELPQNMDIVLPKLVYMNVSKNSF-EGNIPS-----SIGKMQGLLATYMNMTQL 235
F G LP L ++N+ N F +GNI ++G+++ L+ ++ +++ +
Sbjct: 445 FDG---------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L L +L GGN+ + + LT LK L +++N+L I LT+L+ L+L N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 64 RFK 66
+ +
Sbjct: 166 QLQ 168
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L L EL N+ + + LT+L+ L +S+N+L + L L+ + L+
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 63 NRF 65
N+F
Sbjct: 189 NQF 191
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 226 LATYMNMTQLWALYLHNDNFSRKIKDGLL-RSTELEDLDISNNILSGHIPSWMGNFSHLH 284
L + ++TQL LYL + + + G+ R T+L++L ++ N L ++L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 285 TLSMSNNHLEGNIP 298
TLS+S N L+ ++P
Sbjct: 159 TLSLSTNQLQ-SVP 171
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
L L +L GGN+ + + LT LK L +++N+L I LT+L+ L+L N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 64 RFK 66
+ +
Sbjct: 166 QLQ 168
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L L EL N+ + + LT+L+ L +S+N+L + L L+ + L+
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 63 NRF 65
N+F
Sbjct: 189 NQF 191
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 226 LATYMNMTQLWALYLHNDNFSRKIKDGLL-RSTELEDLDISNNILSGHIPSWMGNFSHLH 284
L + ++TQL LYL + + + G+ R T+L++L ++ N L ++L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 285 TLSMSNNHLEGNIP 298
TLS+S N L+ ++P
Sbjct: 159 TLSLSTNQLQ-SVP 171
>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
pdb|3FPC|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By
E. Histolytica Adh
Length = 352
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 278 GNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACL 333
G F H++ M+ HL IP++ A + IPD+ G+ ++ + L C+
Sbjct: 121 GEFFHVNDADMNLAHLPKEIPLE----AAVMIPDMMTTGFHGAELANIKLGDTVCV 172
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 7/156 (4%)
Query: 187 TGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFS 246
T PQ +P + + + GN S + A++ + L L+LH++ +
Sbjct: 14 TTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPA-----ASFQSCRNLTILWLHSNALA 68
Query: 247 RKIKDGLLRSTELEDLDISNNI-LSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLA 305
T LE LD+S+N L P+ HLHTL + L+ P + LA
Sbjct: 69 GIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLA 128
Query: 306 GLYIPDISENNLSGSMISTL-NLSSVACLYLQNNAL 340
L + +NNL +T +L ++ L+L N +
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 8 FELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR 64
+E + FEG L+HL+VL ++ N L+ + P V ++LT+L L+L NR
Sbjct: 467 WETELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
>pdb|2JH8|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-capping Production-line
pdb|2JH9|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHA|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHC|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHP|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
Length = 644
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 133 DLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG--------FQLTSAQ---HGLLSLDI 181
+LSH G P W L + L L+L N ++ + T Q HG + +
Sbjct: 13 ELSHIVKDGFLPIWKLTGDESLNDLWLENGKYATDVYAYGDVSKWTIRQLRGHGFIFIST 72
Query: 182 SSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQ 223
N ++ + +D+ +P+ V + +FE I +M+
Sbjct: 73 HKNVQLADIIKTVDVRIPREVARSHDMKAFENEIGRRRIRMR 114
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
L +L +L N+ G P +H++ L + NK+ I + L L+ L LYD
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 63 NRF 65
N+
Sbjct: 112 NQI 114
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 28 LTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
L HL L++ N+L+GI P+ + ++ L L +N+ K
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR 64
+ + E+ N + P + L+ +D+S+N++S + P L SL L LY N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 65 --------FKGRLFSFYSLANLSKFEAFQLSMETDL 92
F+G L N +K ++ DL
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 124/299 (41%), Gaps = 38/299 (12%)
Query: 29 THLKVLDVSSNKLSGILPSVIANLTSLEYLAL-YDNRFKGRLFSFYSLANLSKFEAFQLS 87
T+L LD+S N L + + L SL YL+L Y+N + SFY L+NL ++ + + +
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL-RYLSLKRA 306
Query: 88 METDLLQVEIENCLPTFQ---LKVLSLPNCNLGAIP----NFLLLQFNLKYLDLSHNKLA 140
+ + + F LK L N + IP N +LKYL LS
Sbjct: 307 FTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS----- 361
Query: 141 GNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPK 200
T L L N +F ++ A LL+L+++ N + ++ L +
Sbjct: 362 ----------KTFTSLQTLTNETF----VSLAHSPLLTLNLTKNHIS-KIANGTFSWLGQ 406
Query: 201 LVYMNVSKNSFEGNIPSSIGK-MQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTEL 259
L +++ N E + + ++ + Y++ + L + ++ +LR L
Sbjct: 407 LRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVAL 466
Query: 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318
+++DIS PS +L L +SNN++ + L L I D NNL+
Sbjct: 467 KNVDIS--------PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 15 NKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
N+ P + LT L LD+ +N+L+ + V LT L L+L DN+ K
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 54/190 (28%)
Query: 132 LDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELP 191
LDLSHN L+ W T L L L +N + ISS +F
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--------------ISSEAF----- 84
Query: 192 QNMDIVLPKLVYMNVSKN---SFEGNIPSSIGKMQGLLA-----------TYMNMTQLWA 237
+ +P L Y+++S N + + + S + ++ LL + +M QL
Sbjct: 85 ----VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 238 LYLHNDNFSR----KIKDGLLRSTELEDLDISNNILSG-------HIPSWMGNFSHLHTL 286
LYL + SR IKDG + +L LD+S+N L +P+W+ N +LH
Sbjct: 141 LYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH-- 197
Query: 287 SMSNNHLEGN 296
NN LE +
Sbjct: 198 ---NNPLECD 204
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 22 PQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
P + LT L LD+ +N+L+ + V LT L L+L DN+ K
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 22 PQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
P + LT L LD+ +N+L+ + V LT L L+L DN+ K
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNR 64
+ + E+ N + P + L+ +D+S+N++S + P L SL L LY N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 65 --------FKGRLFSFYSLANLSKFEAFQLSMETDL 92
F+G L N +K ++ DL
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDL 127
>pdb|4FN4|A Chain A, Short-chain Nad(h)-dependent Dehydrogenase/reductase From
Sulfolobus Acidocaldarius
pdb|4FN4|B Chain B, Short-chain Nad(h)-dependent Dehydrogenase/reductase From
Sulfolobus Acidocaldarius
pdb|4FN4|C Chain C, Short-chain Nad(h)-dependent Dehydrogenase/reductase From
Sulfolobus Acidocaldarius
pdb|4FN4|D Chain D, Short-chain Nad(h)-dependent Dehydrogenase/reductase From
Sulfolobus Acidocaldarius
Length = 254
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 160 VNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSI 219
+ F+G T A+HGL+ L S + G+ VLP V N+ S + PS +
Sbjct: 148 IRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSK---PSEL 204
Query: 220 G 220
G
Sbjct: 205 G 205
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 129 LKYLDLSHNKL---AGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNS 185
LK LDLSHN L N P + +LE LYL +NS +L S H L +L +S N
Sbjct: 303 LKVLDLSHNHLLHVERNQPQF-----DRLENLYLDHNSIVTLKL-STHHTLKNLTLSHND 356
Query: 186 F 186
+
Sbjct: 357 W 357
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L NL L+ G N+ P L NL+ L L NK+S I P +A+L +L + L
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHL 208
Query: 61 YDNRFKGRLFSFYSLANLSKF 81
DN+ LANLS
Sbjct: 209 KDNQIS----DVSPLANLSNL 225
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 22 PQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFK 66
P ++LT L L+++ N+L+ + V LT L +LAL+ N+ K
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK 101
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 113
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 114 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT 162
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 129 LKYLDLSHNKL---AGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNS 185
LK LDLSHN L N P + +LE LYL +NS +L S H L +L +S N
Sbjct: 297 LKVLDLSHNHLLHVERNQPQF-----DRLENLYLDHNSIVTLKL-STHHTLKNLTLSHND 350
Query: 186 F 186
+
Sbjct: 351 W 351
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211
T+L L L + Q+ L +LD+S N LP + LP L ++VS N
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 212 EGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST-ELEDLDISNNILS 270
++P +G ++GL +L LYL + + + GLL T +LE L ++NN L+
Sbjct: 113 T-SLP--LGALRGL-------GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 271 GHIPSWMGNFSHLHTLSMSNNHL 293
+ +L TL + N L
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 27/118 (22%)
Query: 27 NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQL 86
NL L+VL++S L ++A L L +L L N F+ ++SK
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD--------GSISK------ 467
Query: 87 SMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN--FLLLQFNLKYLDLSHNKLAGN 142
T+LLQ+ L++L L +CNL +I F L+ N+ +LDLSHN L G+
Sbjct: 468 ---TNLLQM-------VGSLEILILSSCNLLSIDQQAFHGLR-NVNHLDLSHNSLTGD 514
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 28 LTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63
LTHLK L + +N+L + + LTSL+ + L+ N
Sbjct: 322 LTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 25 LNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84
+L HL+VL + N + I L SL L L+DN + ++ FE
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN--------WLTVIPSGAFEYL 146
Query: 85 QLSMETDLLQVEIENCLPTFQL-KVLSLPNCNLGAIPNFLLLQ-------FNLKYLDLSH 136
E L IE+ +P++ +V SL +LG + + FNLKYL+L
Sbjct: 147 SKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205
Query: 137 NKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLD--ISSNSFTGELPQNM 194
+ + P L LE L + N F + S HGL SL NS + +N
Sbjct: 206 CNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNA 261
Query: 195 DIVLPKLVYMNVSKN 209
L LV +N++ N
Sbjct: 262 FDGLASLVELNLAHN 276
>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|B Chain B, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|C Chain C, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
pdb|2NVB|D Chain D, Contribution Of Pro275 To The Thermostability Of The
Alcohol Dehydrogenases (Adhs)
Length = 352
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 278 GNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNL-SSVACLYL 335
G F H++ M+ HL IP++ A + IPD+ G+ ++ + L ++VA L +
Sbjct: 121 GEFFHVNDADMNLAHLPKEIPLE----AAVMIPDMMTTGFHGAELADIELGATVAVLGI 175
>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|B Chain B, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|C Chain C, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1YKF|D Chain D, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium
Brockii
pdb|1BXZ|A Chain A, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|B Chain B, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|C Chain C, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
pdb|1BXZ|D Chain D, Crystal Structure Of A Thermophilic Alcohol Dehydrogenase
Substrate Complex From Thermoanaerobacter Brockii
Length = 352
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 278 GNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNL-SSVACLYL 335
G F H++ M+ HL IP++ A + IPD+ G+ ++ + L ++VA L +
Sbjct: 121 GEFFHVNDADMNLAHLPKEIPLE----AAVMIPDMMTTGFHGAELADIELGATVAVLGI 175
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62
+L L +L+ N+ + + LT L +L + NKL + V LT L+ LAL
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 63 NRFK 66
N+ K
Sbjct: 110 NQLK 113
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLAL 60
+ L L L G NK L+ LT L L + N++S I+P +A LT L+ L L
Sbjct: 125 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYL 180
Query: 61 YDNRFKGRLFSFYSLANLSKFEAF 84
N L + L NL E F
Sbjct: 181 SKNHI-SDLRALCGLKNLDVLELF 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,036,134
Number of Sequences: 62578
Number of extensions: 411673
Number of successful extensions: 1357
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 356
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)