Query 042610
Match_columns 351
No_of_seqs 146 out of 2300
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 07:52:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2E-34 4.3E-39 286.1 21.2 340 2-346 209-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.7E-34 1E-38 283.3 21.5 340 1-346 184-565 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-31 2.3E-36 233.1 3.6 320 7-342 80-430 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.2E-30 1.6E-34 221.8 5.9 317 9-341 56-378 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.1E-29 6.6E-34 220.0 -3.5 318 3-340 5-374 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 2.4E-27 5.1E-32 197.7 -8.7 330 3-346 66-544 (565)
7 PLN03210 Resistant to P. syrin 99.9 9.1E-22 2E-26 196.6 20.6 310 2-339 555-904 (1153)
8 KOG0444 Cytoskeletal regulator 99.9 1.9E-24 4.1E-29 190.2 0.6 322 4-346 77-409 (1255)
9 PLN03210 Resistant to P. syrin 99.9 3.9E-21 8.4E-26 192.2 21.3 284 6-317 612-905 (1153)
10 PRK15387 E3 ubiquitin-protein 99.8 4.4E-20 9.4E-25 172.9 17.1 262 5-322 201-462 (788)
11 KOG0618 Serine/threonine phosp 99.8 6E-23 1.3E-27 187.7 -2.0 106 232-340 358-464 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 3.7E-23 8E-28 172.8 -7.3 325 6-341 46-518 (565)
13 KOG0618 Serine/threonine phosp 99.8 4.4E-22 9.6E-27 182.1 -1.6 324 3-339 66-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 3E-18 6.6E-23 160.6 14.9 246 5-303 222-467 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 5.5E-18 1.2E-22 159.7 14.0 246 6-318 179-428 (754)
16 KOG4237 Extracellular matrix p 99.7 9.6E-20 2.1E-24 152.2 -6.1 273 30-317 68-358 (498)
17 cd00116 LRR_RI Leucine-rich re 99.7 4.6E-18 1E-22 148.4 3.5 138 197-340 163-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-17 3.3E-22 145.1 4.5 281 9-316 2-318 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 7.1E-17 1.5E-21 152.3 8.4 226 5-294 199-428 (754)
20 KOG4237 Extracellular matrix p 99.7 1.2E-17 2.5E-22 139.9 -0.4 259 53-340 67-358 (498)
21 KOG0617 Ras suppressor protein 99.6 8.9E-17 1.9E-21 119.8 -3.0 157 3-166 31-187 (264)
22 KOG0617 Ras suppressor protein 99.5 2.2E-15 4.8E-20 112.4 -3.1 176 127-319 33-213 (264)
23 KOG1909 Ran GTPase-activating 99.4 1.8E-13 4E-18 113.3 2.9 232 101-340 27-310 (382)
24 KOG0532 Leucine-rich repeat (L 99.3 2E-13 4.3E-18 120.0 -3.1 191 107-339 78-271 (722)
25 KOG1909 Ran GTPase-activating 99.3 1.4E-12 3.1E-17 108.1 2.0 260 25-317 26-310 (382)
26 KOG3207 Beta-tubulin folding c 99.2 1.9E-12 4.2E-17 110.3 1.9 207 102-318 119-339 (505)
27 KOG3207 Beta-tubulin folding c 99.2 1.9E-12 4E-17 110.4 -1.3 183 3-186 119-313 (505)
28 KOG1259 Nischarin, modulator o 99.1 5.7E-11 1.2E-15 97.0 1.9 130 199-344 284-415 (490)
29 KOG4658 Apoptotic ATPase [Sign 99.0 3.3E-10 7.2E-15 109.3 7.3 299 6-350 524-851 (889)
30 PF14580 LRR_9: Leucine-rich r 99.0 5.3E-10 1.2E-14 86.8 6.2 99 233-334 42-146 (175)
31 PLN03150 hypothetical protein; 99.0 6.9E-10 1.5E-14 104.7 8.1 113 234-346 419-533 (623)
32 KOG1259 Nischarin, modulator o 99.0 2.2E-10 4.8E-15 93.6 2.2 83 126-212 283-365 (490)
33 PF14580 LRR_9: Leucine-rich r 99.0 7.9E-10 1.7E-14 85.9 4.9 125 4-160 18-148 (175)
34 PF13855 LRR_8: Leucine rich r 99.0 6E-10 1.3E-14 71.2 3.3 61 5-65 1-61 (61)
35 COG4886 Leucine-rich repeat (L 99.0 1.2E-09 2.6E-14 98.2 6.5 178 127-323 116-295 (394)
36 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.9E-14 69.6 4.0 58 282-339 2-60 (61)
37 COG4886 Leucine-rich repeat (L 98.9 1.7E-09 3.6E-14 97.3 5.9 184 100-301 112-297 (394)
38 KOG0532 Leucine-rich repeat (L 98.9 4.5E-11 9.8E-16 105.4 -4.1 175 8-194 78-253 (722)
39 PLN03150 hypothetical protein; 98.8 4.6E-09 1E-13 99.1 6.5 89 258-346 419-508 (623)
40 KOG4658 Apoptotic ATPase [Sign 98.8 2.5E-09 5.5E-14 103.3 3.5 294 3-315 543-856 (889)
41 KOG0531 Protein phosphatase 1, 98.7 4.4E-09 9.5E-14 94.9 1.3 226 100-344 91-321 (414)
42 KOG4341 F-box protein containi 98.7 8.6E-10 1.9E-14 94.0 -4.1 297 30-335 139-459 (483)
43 COG5238 RNA1 Ran GTPase-activa 98.7 1.4E-08 3.1E-13 82.0 2.9 138 198-341 156-316 (388)
44 KOG2120 SCF ubiquitin ligase, 98.7 1.4E-09 2.9E-14 88.9 -3.0 64 102-165 208-273 (419)
45 KOG2982 Uncharacterized conser 98.6 9.6E-09 2.1E-13 84.0 1.2 106 33-163 49-157 (418)
46 KOG2120 SCF ubiquitin ligase, 98.6 1.3E-09 2.9E-14 89.0 -4.2 176 31-210 187-374 (419)
47 KOG4341 F-box protein containi 98.5 3.2E-09 7E-14 90.6 -4.5 299 6-312 139-459 (483)
48 KOG0531 Protein phosphatase 1, 98.4 3.6E-08 7.7E-13 89.0 -0.1 193 5-211 72-267 (414)
49 KOG2982 Uncharacterized conser 98.4 1.3E-07 2.7E-12 77.6 2.5 185 150-344 69-265 (418)
50 KOG3665 ZYG-1-like serine/thre 98.3 2E-07 4.3E-12 88.2 1.7 150 5-158 122-281 (699)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1E-06 2.2E-11 71.5 4.0 192 122-319 87-317 (388)
52 KOG1859 Leucine-rich repeat pr 98.2 1.1E-07 2.4E-12 86.9 -2.2 112 225-341 179-292 (1096)
53 KOG1859 Leucine-rich repeat pr 98.2 3.7E-08 8E-13 90.0 -5.3 154 1-187 105-292 (1096)
54 PF12799 LRR_4: Leucine Rich r 98.1 6.1E-06 1.3E-10 48.2 3.6 37 282-319 2-38 (44)
55 KOG4579 Leucine-rich repeat (L 98.0 3.1E-07 6.7E-12 66.6 -2.7 111 231-343 51-161 (177)
56 PF12799 LRR_4: Leucine Rich r 98.0 5.4E-06 1.2E-10 48.4 2.7 36 6-42 2-37 (44)
57 PRK15386 type III secretion pr 97.9 9.5E-05 2.1E-09 65.1 10.2 56 123-184 48-104 (426)
58 KOG3665 ZYG-1-like serine/thre 97.9 4.2E-06 9E-11 79.4 0.8 64 99-163 168-231 (699)
59 KOG1644 U2-associated snRNP A' 97.8 3.2E-05 6.9E-10 60.2 5.0 106 6-139 43-152 (233)
60 KOG4579 Leucine-rich repeat (L 97.8 1.5E-06 3.2E-11 63.2 -2.6 105 235-341 29-136 (177)
61 PRK15386 type III secretion pr 97.7 0.00022 4.8E-09 62.8 8.9 91 101-207 49-140 (426)
62 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.5E-09 57.2 5.1 101 236-338 45-150 (233)
63 PF13306 LRR_5: Leucine rich r 97.3 0.00098 2.1E-08 49.5 7.1 80 231-314 33-112 (129)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00088 1.9E-08 49.8 6.8 122 24-155 7-129 (129)
65 KOG1947 Leucine rich repeat pr 97.2 5.9E-05 1.3E-09 69.8 -0.6 61 150-210 241-306 (482)
66 KOG2123 Uncharacterized conser 97.2 3E-05 6.5E-10 63.4 -2.5 102 27-134 17-124 (388)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.3E-09 57.7 2.0 81 4-87 42-124 (260)
68 KOG2123 Uncharacterized conser 96.9 6.8E-05 1.5E-09 61.4 -3.0 97 105-205 20-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00091 2E-08 54.5 3.1 101 232-334 42-149 (260)
70 KOG1947 Leucine rich repeat pr 95.4 0.0056 1.2E-07 56.7 1.0 136 194-337 183-330 (482)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0081 1.8E-07 29.0 1.0 18 283-301 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0096 2.1E-07 28.8 0.9 18 7-25 2-19 (22)
73 KOG3864 Uncharacterized conser 93.3 0.015 3.3E-07 45.7 -1.0 81 235-315 103-186 (221)
74 PF13504 LRR_7: Leucine rich r 92.8 0.07 1.5E-06 23.8 1.2 9 331-339 4-12 (17)
75 KOG4308 LRR-containing protein 92.5 0.00093 2E-08 61.0 -10.2 189 128-319 88-304 (478)
76 KOG3864 Uncharacterized conser 92.0 0.038 8.1E-07 43.6 -0.4 80 8-88 104-185 (221)
77 PF13516 LRR_6: Leucine Rich r 91.9 0.059 1.3E-06 26.5 0.4 16 281-296 2-17 (24)
78 KOG4308 LRR-containing protein 90.0 0.003 6.5E-08 57.7 -9.4 184 154-343 89-305 (478)
79 smart00364 LRR_BAC Leucine-ric 89.1 0.3 6.5E-06 24.5 1.5 20 328-348 2-21 (26)
80 smart00370 LRR Leucine-rich re 89.0 0.28 6.1E-06 24.5 1.4 18 305-322 2-19 (26)
81 smart00369 LRR_TYP Leucine-ric 89.0 0.28 6.1E-06 24.5 1.4 18 305-322 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 83.8 0.04 8.6E-07 44.5 -5.1 60 256-317 64-123 (326)
83 smart00368 LRR_RI Leucine rich 76.4 1.8 3.9E-05 22.1 1.3 14 328-341 2-15 (28)
84 smart00367 LRR_CC Leucine-rich 70.7 1.8 4E-05 21.6 0.5 11 29-39 2-12 (26)
85 KOG3763 mRNA export factor TAP 69.7 2.8 6E-05 38.7 1.7 78 255-334 216-307 (585)
86 smart00365 LRR_SD22 Leucine-ri 69.6 3.8 8.2E-05 20.6 1.5 14 305-318 2-15 (26)
87 KOG3763 mRNA export factor TAP 67.3 4.9 0.00011 37.1 2.7 80 125-205 216-307 (585)
88 KOG0473 Leucine-rich repeat pr 66.9 0.17 3.6E-06 41.0 -5.7 59 234-294 66-124 (326)
89 KOG4242 Predicted myosin-I-bin 36.7 52 0.0011 30.2 3.9 66 127-195 165-235 (553)
90 TIGR00864 PCC polycystin catio 21.5 68 0.0015 36.5 2.4 32 11-42 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-34 Score=286.05 Aligned_cols=340 Identities=31% Similarity=0.447 Sum_probs=236.1
Q ss_pred CCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 2 CELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
.++++|++|++++|.+.+.+|..++++++|++|++++|++.+..|..+.++++|++|++++|.+.+.. ...+.++++|
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L 286 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKL 286 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCc
Confidence 46778888888888887778888888888888888888887777778888888888888888765421 1245566777
Q ss_pred cccccccccccceeeecCcCCccceeEEEcCCCCC-CcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEec
Q 042610 82 EAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNL-GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLV 160 (351)
Q Consensus 82 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (351)
+.+++..+..... ....+..+.+|+.|++++|.+ ..+|..+..+++|+.+++++|.+.+.+|..+ ..+++|+.|+++
T Consensus 287 ~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls 364 (968)
T PLN00113 287 ISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLS 364 (968)
T ss_pred CEEECcCCeeccC-CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECC
Confidence 7777765543221 222344555666666666665 3445556666666666666666655555432 455566666666
Q ss_pred CCccccccc--------------------------cccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccC
Q 042610 161 NNSFSGFQL--------------------------TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGN 214 (351)
Q Consensus 161 ~~~l~~~~~--------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 214 (351)
+|.+..... ...+++|+.|++++|.+.+.+|..+. .+++|+.+++++|.+.+.
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGR 443 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCc
Confidence 555443211 11345566666666666555554443 566666666666666555
Q ss_pred CCCCccccccchh-------------hhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCC
Q 042610 215 IPSSIGKMQGLLA-------------TYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFS 281 (351)
Q Consensus 215 ~~~~~~~~~~l~~-------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 281 (351)
++..+..++++.. .....++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..++.++
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 5543333333221 111235678888888888877777788888899999999998888888888899
Q ss_pred CCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCccccccccc
Q 042610 282 HLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~ 346 (351)
+|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|..+ ++++|+++++++|++.|.+|.
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999998899999999999999999999988777766 888999999999999998885
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-34 Score=283.33 Aligned_cols=340 Identities=31% Similarity=0.443 Sum_probs=262.9
Q ss_pred CCCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccc
Q 042610 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSK 80 (351)
Q Consensus 1 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 80 (351)
+.++++|++|++++|.+.+.+|..++++++|++|++++|++.+..|..+.++++|++|++++|.+.+.. ...+.++++
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~ 261 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKN 261 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc--ChhHhCCCC
Confidence 357899999999999998889999999999999999999999899999999999999999999886422 235778899
Q ss_pred ccccccccccccceeeecCcCCccceeEEEcCCCCC-CcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEe
Q 042610 81 FEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNL-GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYL 159 (351)
Q Consensus 81 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 159 (351)
|+.+++..+..... ....+..+.+|+.|++++|.+ ..+|..+..+++|+.+++++|.+.+..|.. +..+++|+.|++
T Consensus 262 L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L 339 (968)
T PLN00113 262 LQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQL 339 (968)
T ss_pred CCEEECcCCeeecc-CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEEC
Confidence 99999987764322 233466778999999999998 467888999999999999999998777766 478999999999
Q ss_pred cCCccccccc--cccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCC---------------------
Q 042610 160 VNNSFSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIP--------------------- 216 (351)
Q Consensus 160 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------- 216 (351)
++|.+....+ ...++.|+.|++++|++.+.+|..+. .+++|+.++++.|.+.+.+|
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 9999875322 23677888888888887766665543 34445555555554444444
Q ss_pred ---CCccccccch--------------hhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccC
Q 042610 217 ---SSIGKMQGLL--------------ATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGN 279 (351)
Q Consensus 217 ---~~~~~~~~l~--------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 279 (351)
..+..++.+. ..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..|..+..
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence 4333333221 112334555556666655555444433 3466777888888887777878888
Q ss_pred CCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCccccccccc
Q 042610 280 FSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 280 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~ 346 (351)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..+..+ .+++|++|++++|+++|.+|.
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 8899999999999988899889999999999999999998888777 889999999999999988884
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-31 Score=233.14 Aligned_cols=320 Identities=20% Similarity=0.231 Sum_probs=186.1
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccccc
Q 042610 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQL 86 (351)
Q Consensus 7 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l 86 (351)
.+.|++++|.+...-+..|.++++|+.+++..|.++ .+|..-....+|++|++.+|.+. ......+..++.|+.+++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~--sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS--SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc--cccHHHHHhHhhhhhhhh
Confidence 455777777776555566667777777777777766 44543333455777777777665 233345666666666666
Q ss_pred ccccccceeeecCcCCccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 87 SMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
+.+... ..+...++.-.++++|+|++|.+..+. ..|..+.+|.++.++.|.++ .+|...|..+++|+.|++..|.+.
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 655422 122223333345666666666654442 23444455556666666555 555555555666666666555544
Q ss_pred cccc--cc------------------------cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCc
Q 042610 166 GFQL--TS------------------------AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSI 219 (351)
Q Consensus 166 ~~~~--~~------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 219 (351)
.... .. .+.++++|+++.|++. .+.+++.-++..|+.|++++|.+....+..+
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchh
Confidence 3211 11 3455555555555555 3332222255555556666555543333333
Q ss_pred cccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccc---cC
Q 042610 220 GKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLE---GN 296 (351)
Q Consensus 220 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~ 296 (351)
.- +++|++|+++.|.+...-+..|..+..|++|++++|.+.-.....|..+++|++|+++.|.+. +.
T Consensus 314 sf----------tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 314 SF----------TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hh----------cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 22 346677777777666665556666666777777777665433445666777777777777665 23
Q ss_pred cchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCccccc
Q 042610 297 IPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGD 342 (351)
Q Consensus 297 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~ 342 (351)
....|..++.|++|.+.+|++...+-..| ++++|+.|++.+|.+..
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 44556667777777777777776666666 77777777777777643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=7.2e-30 Score=221.84 Aligned_cols=317 Identities=22% Similarity=0.197 Sum_probs=218.2
Q ss_pred EEEccCccccccCCccccC--CCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccccc
Q 042610 9 ELNFGGNKFEGHLPQCLNN--LTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQL 86 (351)
Q Consensus 9 ~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l 86 (351)
.|+.++..+...-...+.+ .+.-+.|++++|++..+.+..|.++++|+.+.+..|.++..+.. -....+++.+++
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f---~~~sghl~~L~L 132 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF---GHESGHLEKLDL 132 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc---cccccceeEEee
Confidence 3677777765222222333 24577899999999999998999999999999999998753332 223456777777
Q ss_pred ccccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 87 SMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
.++-. .......+..++.|+.|||+.|.+.+++. .+..-.++++|++++|.++ .+....|+.+.+|..|.++.|.++
T Consensus 133 ~~N~I-~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 133 RHNLI-SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred ecccc-ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccc
Confidence 76642 22333456777899999999999988874 4555569999999999998 777777899999999999999999
Q ss_pred cccccc--cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccc
Q 042610 166 GFQLTS--AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHND 243 (351)
Q Consensus 166 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 243 (351)
..+... .+++|+.|++..|.+. .+....|.++++|+.|.+.+|.+...-+..|. .+.++++|++..|
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy----------~l~kme~l~L~~N 279 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY----------GLEKMEHLNLETN 279 (873)
T ss_pred ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCccee----------eecccceeecccc
Confidence 887554 5899999999999986 44444566899999999999988744444444 3445666666666
Q ss_pred cccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccc
Q 042610 244 NFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMIS 323 (351)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 323 (351)
++......++.++..|+.|+++.|.+...-++....+++|+.|+++.|+++...+.+|..+..|++|+|++|++....-.
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence 66555555556666666666666665544555555556666666666666655555555555555555555555443333
Q ss_pred cc-ccCcccEEEccCcccc
Q 042610 324 TL-NLSSVACLYLQNNALG 341 (351)
Q Consensus 324 ~~-~~~~L~~l~l~~n~~~ 341 (351)
.| .+.+|++|+++.|.++
T Consensus 360 af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred HHHHhhhhhhhcCcCCeEE
Confidence 34 4455555555555443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=3.1e-29 Score=220.01 Aligned_cols=318 Identities=23% Similarity=0.290 Sum_probs=227.5
Q ss_pred CCCCccEEEccCcccc-ccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 3 ELKNLFELNFGGNKFE-GHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
-++-++-+|+++|.+. +..|..+.+|..++.|.+...++. .+|+.++.+++|++|.+++|++.... ..+..++.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh---GELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH---GELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh---hhhccchhh
Confidence 3567888999999997 678999999999999999999988 78899999999999999999885422 347788899
Q ss_pred cccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecC
Q 042610 82 EAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 82 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (351)
+.+.+..+......-...+..+.-|..|++++|++.++|..+....++-.|++++|++. .+|..++-++.-|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 99999888766666666788888999999999999999999999999999999999998 89998888888888899999
Q ss_pred Cccccccccc-cccCCcEEEeeCCccc-------------------------cccCchhhhcCCCceEEEeecCccccCC
Q 042610 162 NSFSGFQLTS-AQHGLLSLDISSNSFT-------------------------GELPQNMDIVLPKLVYMNVSKNSFEGNI 215 (351)
Q Consensus 162 ~~l~~~~~~~-~~~~L~~L~l~~~~~~-------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 215 (351)
|.+...++.. .+..|++|.+++|.+. +.+|.++. .+.+|..+|++.|.+. ..
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccccccCCC-cc
Confidence 9888766543 4555666666666553 13333332 3444444444444433 23
Q ss_pred CCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccc-
Q 042610 216 PSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLE- 294 (351)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 294 (351)
|. .+-.+++|+.|++++|.+++... ..+.+.+|++|+++.|.++ .+|+.+..+++|++|...+|+++
T Consensus 238 Pe----------cly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 238 PE----------CLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred hH----------HHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence 33 23344567777887777765432 3455667777777777776 66666666666666666655543
Q ss_pred c-----------------------CcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCccc
Q 042610 295 G-----------------------NIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNAL 340 (351)
Q Consensus 295 ~-----------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~ 340 (351)
+ ..|+.+..|+.|+.|.|++|++... |..+ .++.|+.|+++.|+-
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcC
Confidence 1 3445555556666666666655543 3333 456666666666653
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=2.4e-27 Score=197.69 Aligned_cols=330 Identities=28% Similarity=0.341 Sum_probs=198.1
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchh---------
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFY--------- 73 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------- 73 (351)
++.-++++.++.+.+. ..|..++.+..++.++.+.+++. .+|.++..+..|+.++++.|++...+..+.
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 4555666667666665 44444555555555555555444 344444444555555554444433333221
Q ss_pred -----------hhcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCC
Q 042610 74 -----------SLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGN 142 (351)
Q Consensus 74 -----------~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 142 (351)
.+.++.++..+++.++.... .....+ .++.|+.++...|-+..+|..++.+.+|+.++++.|.+. .
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i-~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHI-AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhh-CCHHHH-HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-c
Confidence 22333344444444433211 111112 255666666666666667776777777777777777666 6
Q ss_pred cChhhhhcCccceEEEecCCccccccccc--cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCcc
Q 042610 143 FPTWLLENNTKLELLYLVNNSFSGFQLTS--AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIG 220 (351)
Q Consensus 143 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 220 (351)
+|+ |.+|..|+.++++.|.+.-.+... .++++..|++.+|++. ++|..+. .+.+|.+||+++|.++ ..|..++
T Consensus 221 lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 221 LPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred CCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccc
Confidence 664 456666666666666665443322 4566677777777776 6666665 5666777777777666 4555555
Q ss_pred ccccch--------------------------------------------------------------------------
Q 042610 221 KMQGLL-------------------------------------------------------------------------- 226 (351)
Q Consensus 221 ~~~~l~-------------------------------------------------------------------------- 226 (351)
++. +.
T Consensus 296 nlh-L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 296 NLH-LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred cce-eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 542 11
Q ss_pred -----hhhcCc--cccceeeeccc-----------------------cccccccccccCCCCccEEEccCCcccccCCCC
Q 042610 227 -----ATYMNM--TQLWALYLHND-----------------------NFSRKIKDGLLRSTELEDLDISNNILSGHIPSW 276 (351)
Q Consensus 227 -----~~~~~~--~~L~~L~l~~~-----------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (351)
..|..- .-+..++++.| +..+..+..++.+++|+.|++++|.+. .+|..
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh
Confidence 000000 01233344433 222344445566778888888888777 77888
Q ss_pred ccCCCCCcEEEccCcccc----------------------cCc-chhhhcccCCceeecCCCccccccccccccCcccEE
Q 042610 277 MGNFSHLHTLSMSNNHLE----------------------GNI-PVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACL 333 (351)
Q Consensus 277 ~~~l~~L~~L~l~~~~~~----------------------~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l 333 (351)
++++..|+.|+++.|++. +.+ +..+..+.+|..||+.+|.+...+|...+|.+|+.|
T Consensus 454 ~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHL 533 (565)
T ss_pred hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEE
Confidence 888888888888887643 122 333778999999999999999888877799999999
Q ss_pred EccCccccccccc
Q 042610 334 YLQNNALGDRFVK 346 (351)
Q Consensus 334 ~l~~n~~~~~~p~ 346 (351)
.+.||+|. .|+
T Consensus 534 eL~gNpfr--~Pr 544 (565)
T KOG0472|consen 534 ELDGNPFR--QPR 544 (565)
T ss_pred EecCCccC--CCH
Confidence 99999998 663
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=9.1e-22 Score=196.63 Aligned_cols=310 Identities=21% Similarity=0.262 Sum_probs=197.8
Q ss_pred CCCCCccEEEccCcc------ccccCCccccCCC-CCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhh
Q 042610 2 CELKNLFELNFGGNK------FEGHLPQCLNNLT-HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYS 74 (351)
Q Consensus 2 ~~l~~L~~L~l~~~~------~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 74 (351)
.+|++|+.|.+..+. ....+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+...+. .
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~---~ 629 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWD---G 629 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccccc---c
Confidence 568888888886543 2234566666665 5899999888776 556555 46889999999888765433 3
Q ss_pred hcccccccccccccccccceeeecCcCCccceeEEEcCCCCC-CcCCchhhcCCCceEEEccCcccCCCcChhhhhcCcc
Q 042610 75 LANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNL-GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTK 153 (351)
Q Consensus 75 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 153 (351)
...+++|+.+++..+......+ .+..+++|+.|++.+|.. ..+|..+..+++|+.|++++|.....+|..+ .+++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~s 705 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKS 705 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCC
Confidence 4567888888888765443333 366678899999988764 7788888889999999999876555777654 6788
Q ss_pred ceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeec-------------------------
Q 042610 154 LELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSK------------------------- 208 (351)
Q Consensus 154 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~------------------------- 208 (351)
|+.|++++|..... .+....+|+.|+++++.+. .+|..+ .+++|++|++..
T Consensus 706 L~~L~Lsgc~~L~~-~p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRLKS-FPDISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCccc-cccccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccch
Confidence 89999888753321 1223567888888888776 666543 245555555544
Q ss_pred ------CccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCC
Q 042610 209 ------NSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSH 282 (351)
Q Consensus 209 ------~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 282 (351)
|.....+|.+ +..+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. ..+
T Consensus 782 ~L~Ls~n~~l~~lP~s----------i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 782 RLFLSDIPSLVELPSS----------IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred heeCCCCCCccccChh----------hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccc
Confidence 3322222222 2334455555555554444444333 4555555555555433233321 245
Q ss_pred CcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcc
Q 042610 283 LHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNA 339 (351)
Q Consensus 283 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 339 (351)
|+.|++++|.+. .+|..+..+++|+.|++++|+-....+... .+++|+.+++.+|.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 666666666665 566677777777777777764333333333 67777777777775
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.9e-24 Score=190.17 Aligned_cols=322 Identities=22% Similarity=0.245 Sum_probs=166.5
Q ss_pred CCCccEEEccCcccc-ccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 4 LKNLFELNFGGNKFE-GHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 4 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
++.|+.+.+..|.+. .-+|..+..+..|+.|+++.|++. ..|..+.+.+++-.|++++|++...+. ..+.+++.|-
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn--~lfinLtDLL 153 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN--SLFINLTDLL 153 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc--hHHHhhHhHh
Confidence 444444444444432 123334444444444444444444 333444444444444444444432111 1233444444
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccC-CCcChhhhhcCccceEEEec
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLA-GNFPTWLLENNTKLELLYLV 160 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~ 160 (351)
.++++.+....- .-.+..+..|++|.+++|.+..+. ..+..+.+|+.|.+++.+-+ ..+|.++ ..+.+|..++++
T Consensus 154 fLDLS~NrLe~L--PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS 230 (1255)
T KOG0444|consen 154 FLDLSNNRLEML--PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLS 230 (1255)
T ss_pred hhccccchhhhc--CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhcccc
Confidence 444443331111 001222334445555554442110 11222334455555544322 1233332 444555555555
Q ss_pred CCccccccccc-cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceee
Q 042610 161 NNSFSGFQLTS-AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALY 239 (351)
Q Consensus 161 ~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 239 (351)
.|++..++..- .+++|..|++++|.++ ++..... .-.+|.+|++++|.++ .+|..++.++ +|+.|+
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~----------kL~kLy 297 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLT----------KLTKLY 297 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhH----------HHHHHH
Confidence 55554443221 3445555555555554 3333332 3345666666666665 4555444433 555566
Q ss_pred ecccccc-ccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 240 LHNDNFS-RKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 240 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
+.+|.++ +.+|.+++.+..|+.+..++|.+. ..|..++.|++|+.|.++.|.+. .+|+++.-++.|+.||+..|.-.
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 6555544 345677788888888888888776 78888888999999999988887 78888888899999999988655
Q ss_pred ccccccc-ccCcccEEEccC-----ccccccccc
Q 042610 319 GSMISTL-NLSSVACLYLQN-----NALGDRFVK 346 (351)
Q Consensus 319 ~~~~~~~-~~~~L~~l~l~~-----n~~~~~~p~ 346 (351)
..+|..- .-.+++.-++.. =++.|.+|.
T Consensus 376 VMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 376 VMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred cCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 4455433 223444433322 135676664
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.9e-21 Score=192.15 Aligned_cols=284 Identities=26% Similarity=0.326 Sum_probs=167.3
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
+|+.|++.++.+. .++..+..+++|+.|+++++......| .++.+++|+.|++++|.... .....+.++++|+.++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLD 687 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc--ccchhhhccCCCCEEe
Confidence 3444444444443 333334444445555554433222233 24444455555554443211 0011233444444444
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCC-CcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcc
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNL-GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSF 164 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 164 (351)
+..+......+.. ..+.+|+.|++++|.. ..+|.. ..+|+.|+++++.+. .+|..+ .+++|+.|.+..+..
T Consensus 688 L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 688 MSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKS 759 (1153)
T ss_pred CCCCCCcCccCCc--CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccch
Confidence 4444333222211 1334455555555432 223321 224555555555543 444322 345555555544221
Q ss_pred cccc---------ccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCcccc
Q 042610 165 SGFQ---------LTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQL 235 (351)
Q Consensus 165 ~~~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 235 (351)
.... ....+++|+.|++++|.....+|..+. .+++|+.|++++|...+.+|..+ .+++|
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-----------~L~sL 827 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-----------NLESL 827 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-----------Ccccc
Confidence 1110 011346899999999987768898876 89999999999986555566432 45689
Q ss_pred ceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCC
Q 042610 236 WALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISEN 315 (351)
Q Consensus 236 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 315 (351)
+.|++++|.....++.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|
T Consensus 828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 99999998766655532 467999999999998 78989999999999999998766678888889999999999999
Q ss_pred cc
Q 042610 316 NL 317 (351)
Q Consensus 316 ~~ 317 (351)
.-
T Consensus 904 ~~ 905 (1153)
T PLN03210 904 GA 905 (1153)
T ss_pred cc
Confidence 53
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4.4e-20 Score=172.90 Aligned_cols=262 Identities=23% Similarity=0.307 Sum_probs=152.0
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
.+-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|.++..+.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~l------p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPVL------PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccCc------cccccee
Confidence 34567999999998 6777665 489999999999884 453 358999999999988753321 2455555
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcc
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSF 164 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 164 (351)
++..+....... -...|+.|++++|++..+|.. .++|+.|++++|.+. .+|. ...+|+.|++++|.+
T Consensus 268 ~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchhhhhh-----chhhcCEEECcCCcccccccc---ccccceeECCCCccc-cCCC----CcccccccccccCcc
Confidence 555443211100 113566666666666666542 245666666666665 4443 123466666666666
Q ss_pred ccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccc
Q 042610 165 SGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDN 244 (351)
Q Consensus 165 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 244 (351)
..++. .+.+|+.|++++|++. .+|.. ..+|+.|++++|.+. .+|.. ...|+.|++++|.
T Consensus 335 ~~LP~--lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l-------------~~~L~~LdLs~N~ 393 (788)
T PRK15387 335 TSLPT--LPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL-------------PSGLKELIVSGNR 393 (788)
T ss_pred ccccc--cccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc-------------ccccceEEecCCc
Confidence 65432 2345666666666665 44431 345666666666554 23321 1245666666665
Q ss_pred ccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccc
Q 042610 245 FSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
+.+ ++.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+
T Consensus 394 Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 394 LTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 543 2211 245666666666655 34432 234556666666665 456556666666666666666655433
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=6e-23 Score=187.67 Aligned_cols=106 Identities=26% Similarity=0.322 Sum_probs=70.4
Q ss_pred ccccceeeeccccccccccccccCCCCccEEEccCCcccccCCC-CccCCCCCcEEEccCcccccCcchhhhcccCCcee
Q 042610 232 MTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPS-WMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIP 310 (351)
Q Consensus 232 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 310 (351)
++.|+.|++.+|.+++...+.+.++.+|+.|+++.|.+. .+|+ .+..+..|++|.+|||+++ .+|..+..++.|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 345667777777777777777777888888888888877 5554 4567888888888888876 555665555555555
Q ss_pred ecCCCccccccccccccCcccEEEccCccc
Q 042610 311 DISENNLSGSMISTLNLSSVACLYLQNNAL 340 (351)
Q Consensus 311 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~ 340 (351)
..++|.+...+ ....++.|+.+|++.|.+
T Consensus 436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred hhcCCceeech-hhhhcCcceEEecccchh
Confidence 55555555433 333555555555555554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.7e-23 Score=172.84 Aligned_cols=325 Identities=26% Similarity=0.305 Sum_probs=221.9
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
.+..+.++.|.+. .+.+.+.+++.+.++++..+++. ..|+++..+..++.++.++|++...+..+. .+..+..++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~---s~~~l~~l~ 120 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIG---SLISLVKLD 120 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHh---hhhhhhhhh
Confidence 3566788888887 55556889999999999999988 677889999999999999999876565543 444555555
Q ss_pred cccccccce---------------------eeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcC
Q 042610 86 LSMETDLLQ---------------------VEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFP 144 (351)
Q Consensus 86 l~~~~~~~~---------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 144 (351)
+.++....- .....+..+.++..+++.++.+..+|.....+..|+.++...|.+. .+|
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence 554432111 1112334444555566666666666555555666777766666665 666
Q ss_pred hhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCcccccc
Q 042610 145 TWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQG 224 (351)
Q Consensus 145 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 224 (351)
..+ +.+.+|..|++.+|++...+...++..|.+++++.|.+. .+|+.+...++.+..||+..|++. ..|..++.+.+
T Consensus 200 ~~l-g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 200 PEL-GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hhh-cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 654 567777777788888887777778888999999999888 889888888999999999999998 77877766654
Q ss_pred ch-------------hhhcCccccceeeeccccccc------------------------------c--------ccccc
Q 042610 225 LL-------------ATYMNMTQLWALYLHNDNFSR------------------------------K--------IKDGL 253 (351)
Q Consensus 225 l~-------------~~~~~~~~L~~L~l~~~~~~~------------------------------~--------~~~~~ 253 (351)
+. ..++++ .|+.|-+.||.+.+ . ....+
T Consensus 277 L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 277 LERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 33 333344 45555554441100 0 00000
Q ss_pred c---CC--------------------------CCccEEEccCCccc-----------------------ccCCCCccCCC
Q 042610 254 L---RS--------------------------TELEDLDISNNILS-----------------------GHIPSWMGNFS 281 (351)
Q Consensus 254 ~---~~--------------------------~~L~~L~l~~~~~~-----------------------~~~~~~~~~l~ 281 (351)
. .+ .-.+..++++|.+. +..|..+++++
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh
Confidence 0 00 01355555555432 12334556788
Q ss_pred CCcEEEccCcccccCcchhhhcccCCceeecCCCccc-----------------------ccccccc-ccCcccEEEccC
Q 042610 282 HLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS-----------------------GSMISTL-NLSSVACLYLQN 337 (351)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----------------------~~~~~~~-~~~~L~~l~l~~ 337 (351)
+|..|++++|.+. .+|..++.+..|+.+++++|++. ...++-+ .+.+|.+|++++
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 9999999998776 88999999999999999998764 1223323 788899999999
Q ss_pred cccc
Q 042610 338 NALG 341 (351)
Q Consensus 338 n~~~ 341 (351)
|.+-
T Consensus 515 Ndlq 518 (565)
T KOG0472|consen 515 NDLQ 518 (565)
T ss_pred Cchh
Confidence 9874
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=4.4e-22 Score=182.07 Aligned_cols=324 Identities=27% Similarity=0.381 Sum_probs=195.4
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccc---
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLS--- 79 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~--- 79 (351)
.+.+|++|.++.|-+. ..|....++.+|++++|.++++. ..|..++.+++|++|+++.|.+...+..+..+....
T Consensus 66 ~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~ 143 (1081)
T KOG0618|consen 66 LLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELA 143 (1081)
T ss_pred hHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHh
Confidence 4567777888887776 66677777888888888877766 677778888888888888776543333222211110
Q ss_pred -------------cccc----------------------cccccccccceeeecCcCCc---------------------
Q 042610 80 -------------KFEA----------------------FQLSMETDLLQVEIENCLPT--------------------- 103 (351)
Q Consensus 80 -------------~L~~----------------------l~l~~~~~~~~~~~~~~~~~--------------------- 103 (351)
.++. +++.++.-. ...+..+
T Consensus 144 ~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l~~~g~ 219 (1081)
T KOG0618|consen 144 ASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME----VLDLSNLANLEVLHCERNQLSELEISGP 219 (1081)
T ss_pred hhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh----hhhhhhccchhhhhhhhcccceEEecCc
Confidence 0111 111111100 0011111
Q ss_pred ---------------------cceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 104 ---------------------FQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 104 ---------------------~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
.+|++++++++++..+|+++..+.+|+.++..+|.+. .+|..+ ....+|+.|.+..|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri-~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRI-SRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHH-hhhhhHHHHHhhhh
Confidence 2334444444444444444444444444444444443 333332 23334444444444
Q ss_pred ccccccccc-cccCCcEEEeeCCccccccCchhhhcCCC-ceEEEeecCccccCCCCC----cccccc-----------c
Q 042610 163 SFSGFQLTS-AQHGLLSLDISSNSFTGELPQNMDIVLPK-LVYMNVSKNSFEGNIPSS----IGKMQG-----------L 225 (351)
Q Consensus 163 ~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~----~~~~~~-----------l 225 (351)
++.-++... ...+|++|++..|.+. .+|..++..... +..++.+.+.+. ..|.. .+.+.. .
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccc
Confidence 444333322 4667777777777766 555543322221 333333333332 11100 000000 0
Q ss_pred hhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhccc
Q 042610 226 LATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLA 305 (351)
Q Consensus 226 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 305 (351)
...+.++..|+.|+|+.|.+.+.....+.++..|++|+++||+++ .+|+....++.|++|...+|++. ..| .+.+++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~ 452 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP 452 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC
Confidence 045667889999999999988777777888999999999999999 88898999999999999999998 677 788999
Q ss_pred CCceeecCCCcccccccccc-ccCcccEEEccCcc
Q 042610 306 GLYIPDISENNLSGSMISTL-NLSSVACLYLQNNA 339 (351)
Q Consensus 306 ~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 339 (351)
.|+.+|++.|.+........ .-+.|++|+++||.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99999999999876433322 33899999999997
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=3e-18 Score=160.65 Aligned_cols=246 Identities=21% Similarity=0.233 Sum_probs=182.8
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
++++.|++.+|.++ .+|. ..++|++|++++|+++. +|. ..++|+.|++++|.+...+.. ...|+.+
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~~Lp~l------p~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPAL------PSGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccC---cccccceeeccCCchhhhhhc------hhhcCEE
Confidence 36889999999988 5664 35789999999999884 443 246899999999987642221 2456666
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcc
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSF 164 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 164 (351)
++..+..... +. ..++|+.|++++|++..+|... .+|+.|++++|.+. .+|. ..++|+.|++++|.+
T Consensus 288 ~Ls~N~Lt~L-P~----~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 288 WIFGNQLTSL-PV----LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQL 354 (788)
T ss_pred ECcCCccccc-cc----cccccceeECCCCccccCCCCc---ccccccccccCccc-cccc----cccccceEecCCCcc
Confidence 7666543211 11 1357999999999998877532 36888899999887 6774 235899999999999
Q ss_pred ccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccc
Q 042610 165 SGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDN 244 (351)
Q Consensus 165 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 244 (351)
..++. .+..|+.|++++|.+. .+|.. +.+|+.|++++|.+. .+|.. .++|+.|++++|.
T Consensus 355 s~LP~--lp~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt-~LP~l-------------~s~L~~LdLS~N~ 413 (788)
T PRK15387 355 ASLPT--LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVL-------------PSELKELMVSGNR 413 (788)
T ss_pred CCCCC--CCcccceehhhccccc-cCccc----ccccceEEecCCccc-CCCCc-------------ccCCCEEEccCCc
Confidence 87653 3567889999999888 67642 467999999999887 34432 2468899999998
Q ss_pred ccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhc
Q 042610 245 FSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQN 303 (351)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 303 (351)
+.+ +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++.+..+..+..
T Consensus 414 Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 414 LTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 875 4432 356888999999998 78888889999999999999999877776643
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=5.5e-18 Score=159.70 Aligned_cols=246 Identities=23% Similarity=0.357 Sum_probs=132.0
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
+.+.|+++++.++ .+|..+. ++++.|++++|+++. +|..+ .++|+.|++++|.++..+..
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~LtsLP~~-------------- 238 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLTSIPAT-------------- 238 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccccCChh--------------
Confidence 4456666666665 4454332 356666666666663 33322 24666666666655431110
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
+ ...|+.|++++|.+..+|..+. .+|+.|++++|++. .+|..+ .++|+.|++++|.++
T Consensus 239 --------------l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 239 --------------L--PDTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIR 296 (754)
T ss_pred --------------h--hccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccc
Confidence 0 0146677777777766666543 36777777777766 566533 246777777777666
Q ss_pred cccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccc
Q 042610 166 GFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNF 245 (351)
Q Consensus 166 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 245 (351)
.++. ...++|+.|++++|.+. .+|..+ .++|+.|++++|.++ .+|..+ +++|+.|++++|.+
T Consensus 297 ~LP~-~lp~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt-~LP~~l------------~~sL~~L~Ls~N~L 358 (754)
T PRK15370 297 TLPA-HLPSGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALT-SLPASL------------PPELQVLDVSKNQI 358 (754)
T ss_pred cCcc-cchhhHHHHHhcCCccc-cCCccc---cccceeccccCCccc-cCChhh------------cCcccEEECCCCCC
Confidence 5432 12345666666666665 455432 356666666666655 233221 13556666666555
Q ss_pred cccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhh----hcccCCceeecCCCccc
Q 042610 246 SRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQC----QNLAGLYIPDISENNLS 318 (351)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~~~ 318 (351)
.. ++..+ .+.|+.|++++|.++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+..+++.+|.+.
T Consensus 359 ~~-LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 359 TV-LPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Cc-CChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 42 22222 235666666666555 3443332 24555666666555 333332 22355555666666554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=9.6e-20 Score=152.17 Aligned_cols=273 Identities=18% Similarity=0.176 Sum_probs=147.7
Q ss_pred CCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccceeEE
Q 042610 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVL 109 (351)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 109 (351)
....++|.-|+|+.+.+.+|..+++|+.||+++|.+. .+...++..++.+..+.+.++......+...+..+..++-|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 3445555555555555555555555555555555554 22223445555555555555444455555566666677777
Q ss_pred EcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc--------------ccc
Q 042610 110 SLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS--------------AQH 174 (351)
Q Consensus 110 ~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--------------~~~ 174 (351)
.+.-+.+..++ +.+..++++..|.+.+|.+. .++...+..+..++++++..|+........ ...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 77777776553 57788889999999998887 777767788888888888877643321111 000
Q ss_pred CCcEEEeeCCccccccCchhhhcCCCceEE---EeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccc
Q 042610 175 GLLSLDISSNSFTGELPQNMDIVLPKLVYM---NVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKD 251 (351)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L---~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 251 (351)
......+...++. .+.+.-+ ...++.+ -.+.+...+..| ...|..+++|+.|++++|.+++....
T Consensus 225 c~~p~rl~~~Ri~-q~~a~kf--~c~~esl~s~~~~~d~~d~~cP---------~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 225 CVSPYRLYYKRIN-QEDARKF--LCSLESLPSRLSSEDFPDSICP---------AKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred ecchHHHHHHHhc-ccchhhh--hhhHHhHHHhhccccCcCCcCh---------HHHHhhcccceEeccCCCccchhhhh
Confidence 0000001111111 1111111 0111111 111111111111 12355566666666666666666666
Q ss_pred cccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcc
Q 042610 252 GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNL 317 (351)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 317 (351)
+|....++++|.+.+|++.......|.++..|+.|++.+|+|+...|.+|..+..|.+|++-.|.+
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 666666666666666665433334455666666666666666666666666666666666655443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=4.6e-18 Score=148.42 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=76.4
Q ss_pred cCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccc----ccccccCCCCccEEEccCCccccc
Q 042610 197 VLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRK----IKDGLLRSTELEDLDISNNILSGH 272 (351)
Q Consensus 197 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 272 (351)
.++.|+.|++++|.+.+. ....+...+..+++|+.|++++|.+.+. ....+..+++|+.|++++|.+++.
T Consensus 163 ~~~~L~~L~l~~n~l~~~------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 163 ANRDLKELNLANNGIGDA------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred hCCCcCEEECcCCCCchH------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 344566666665555421 1111112233345666666666655432 223344566777777777766542
Q ss_pred CCCCcc-----CCCCCcEEEccCcccccC----cchhhhcccCCceeecCCCcccccc----cccc-cc-CcccEEEccC
Q 042610 273 IPSWMG-----NFSHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDISENNLSGSM----ISTL-NL-SSVACLYLQN 337 (351)
Q Consensus 273 ~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~-~~-~~L~~l~l~~ 337 (351)
....+. ..++|++|++++|.+++. +...+..+++|+.+++++|.+.+.. +... .. +.++++++..
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 211111 236788888888877632 3344556677888888888877542 2223 22 5788888777
Q ss_pred ccc
Q 042610 338 NAL 340 (351)
Q Consensus 338 n~~ 340 (351)
|++
T Consensus 317 ~~~ 319 (319)
T cd00116 317 DSF 319 (319)
T ss_pred CCC
Confidence 764
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.5e-17 Score=145.13 Aligned_cols=281 Identities=20% Similarity=0.193 Sum_probs=160.6
Q ss_pred EEEccCcccc-ccCCccccCCCCCcEEEccCCcCCCC----CchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 9 ELNFGGNKFE-GHLPQCLNNLTHLKVLDVSSNKLSGI----LPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 9 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
.|+|.++.+. ...+..+..+++|+.|+++++.+++. ++..+...+.+++++++++.+.........
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~--------- 72 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS--------- 72 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHH---------
Confidence 4566666664 23344455667788888888877532 333455667788888877654320000000
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCC-cCCchhhcCCC---ceEEEccCcccCCCcChh---hhhcC-ccce
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLG-AIPNFLLLQFN---LKYLDLSHNKLAGNFPTW---LLENN-TKLE 155 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~---L~~l~l~~~~~~~~~~~~---~~~~~-~~L~ 155 (351)
....+..+.+|+.|++++|.+. ..+..+..+.+ |+.+++++|.+.+..... .+..+ ++|+
T Consensus 73 ------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 73 ------------LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ------------HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 0012233457888888887774 23333434433 888888887765321111 12344 7778
Q ss_pred EEEecCCccccccc------cccccCCcEEEeeCCccccccCchhh---hcCCCceEEEeecCccccCCCCCccccccch
Q 042610 156 LLYLVNNSFSGFQL------TSAQHGLLSLDISSNSFTGELPQNMD---IVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL 226 (351)
Q Consensus 156 ~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 226 (351)
.|++++|.+..... ......|+.|++++|.+.+.....+. ...++|+.|++++|.+.+.. ...+.
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~------~~~l~ 214 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG------ASALA 214 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH------HHHHH
Confidence 88888887763211 12345688888888777642222221 13457888888877765321 12222
Q ss_pred hhhcCccccceeeecccccccccccccc-----CCCCccEEEccCCcccc----cCCCCccCCCCCcEEEccCcccccC-
Q 042610 227 ATYMNMTQLWALYLHNDNFSRKIKDGLL-----RSTELEDLDISNNILSG----HIPSWMGNFSHLHTLSMSNNHLEGN- 296 (351)
Q Consensus 227 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~- 296 (351)
..+..+++|+.|++++|.+.+.....+. ..+.|+.|++++|.+++ .+...+..+++|+++++++|.+.+.
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 3455667788888888776653222221 13678888888887652 2223344557788888888877744
Q ss_pred ---cchhhhcc-cCCceeecCCCc
Q 042610 297 ---IPVQCQNL-AGLYIPDISENN 316 (351)
Q Consensus 297 ---~~~~~~~~-~~L~~L~l~~n~ 316 (351)
....+... ++|+++++.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCCCC
Confidence 34444444 678888877765
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=7.1e-17 Score=152.29 Aligned_cols=226 Identities=23% Similarity=0.389 Sum_probs=163.2
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
++++.|++++|.++ .+|..+. ++|++|++++|+++. +|..+ .++|+.|++++|.+...+...
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~N~L~~LP~~l------------ 260 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELSINRITELPERL------------ 260 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECcCCccCcCChhH------------
Confidence 46899999999998 6666554 599999999999884 45544 357999999999876422211
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcc
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSF 164 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 164 (351)
...|+.|++++|++..+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.+
T Consensus 261 ------------------~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~L 316 (754)
T PRK15370 261 ------------------PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSL 316 (754)
T ss_pred ------------------hCCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcc
Confidence 0157788888888877776553 47888888888887 566533 24678888888888
Q ss_pred ccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccc
Q 042610 165 SGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDN 244 (351)
Q Consensus 165 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 244 (351)
..++. ..+++|+.|++++|.+. .+|..+ +++|+.|++++|.+. .+|..+ .++|+.|++++|.
T Consensus 317 t~LP~-~l~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l------------p~~L~~LdLs~N~ 378 (754)
T PRK15370 317 TALPE-TLPPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL------------PPTITTLDVSRNA 378 (754)
T ss_pred ccCCc-cccccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh------------cCCcCEEECCCCc
Confidence 76532 24567888888888887 577654 468888999888876 455322 1478889999888
Q ss_pred ccccccccccCCCCccEEEccCCcccccCCCCc----cCCCCCcEEEccCcccc
Q 042610 245 FSRKIKDGLLRSTELEDLDISNNILSGHIPSWM----GNFSHLHTLSMSNNHLE 294 (351)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~ 294 (351)
+.. +|..+. ..|+.|++++|.+. .+|..+ +.++++..+++.+|++.
T Consensus 379 Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 379 LTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 764 343332 36889999999887 555433 44578899999999887
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=1.2e-17 Score=139.88 Aligned_cols=259 Identities=19% Similarity=0.169 Sum_probs=176.1
Q ss_pred CCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcC-CchhhcCCCceE
Q 042610 53 TSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI-PNFLLLQFNLKY 131 (351)
Q Consensus 53 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~ 131 (351)
+.-..+.+..|.++..+. ..|+.+++|+.|+|++|++..+ |+.|..++++-.
T Consensus 67 ~~tveirLdqN~I~~iP~---------------------------~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPP---------------------------GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLS 119 (498)
T ss_pred CcceEEEeccCCcccCCh---------------------------hhccchhhhceecccccchhhcChHhhhhhHhhhH
Confidence 356778888888764333 2455556777888888888666 667777777776
Q ss_pred EEccC-cccCCCcChhhhhcCccceEEEecCCcccccccc--ccccCCcEEEeeCCccccccCchhhhcCCCceEEEeec
Q 042610 132 LDLSH-NKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT--SAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSK 208 (351)
Q Consensus 132 l~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 208 (351)
+.+.+ |+++ .+|...|.++..++.|.+.-|.+..+... ..++++..|.+.+|.+. .++...+..+..++.+.+..
T Consensus 120 Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 120 LVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhc
Confidence 66655 6676 78888888888888888877777665433 26777777888888777 66665555677777777776
Q ss_pred Ccccc------------CCCCCccccccchhhhcC------------cccccee---eecccccccccc-ccccCCCCcc
Q 042610 209 NSFEG------------NIPSSIGKMQGLLATYMN------------MTQLWAL---YLHNDNFSRKIK-DGLLRSTELE 260 (351)
Q Consensus 209 ~~~~~------------~~~~~~~~~~~l~~~~~~------------~~~L~~L---~l~~~~~~~~~~-~~~~~~~~L~ 260 (351)
|.+.. ..|..+++..-....... ...++.+ ....+......| ..|..+++|+
T Consensus 198 np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 198 NPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred CccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 66321 111111111100000000 0011111 111122222222 3466788999
Q ss_pred EEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcc
Q 042610 261 DLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNA 339 (351)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 339 (351)
.|++++|++++..+.+|.+..++++|.+.+|++...--.+|..+..|+.|+|.+|+|+...+..| ...+|.+|++-.|+
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 99999999998888899999999999999999886666778899999999999999999888888 88889999998887
Q ss_pred c
Q 042610 340 L 340 (351)
Q Consensus 340 ~ 340 (351)
+
T Consensus 358 ~ 358 (498)
T KOG4237|consen 358 F 358 (498)
T ss_pred c
Confidence 6
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=8.9e-17 Score=119.79 Aligned_cols=157 Identities=24% Similarity=0.316 Sum_probs=101.1
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
++.++++|.++.|+++ .+|..++++.+|+.|++++|+++ .+|..++.+++|++|++.-|++...+ ..+..++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lp---rgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILP---RGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCc---cccCCCchhh
Confidence 5667788889999888 56667888999999999999888 67778889999999998877764322 2345555556
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
.+++.++..........+..+..|+-|+++.+.+.-+|..+.++++|+.+.+++|.+. ++|..+ +.+..|+.|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhcccc
Confidence 6665555544444444455555555555555555555555555555555555555554 455443 44555555555555
Q ss_pred cccc
Q 042610 163 SFSG 166 (351)
Q Consensus 163 ~l~~ 166 (351)
.++-
T Consensus 184 rl~v 187 (264)
T KOG0617|consen 184 RLTV 187 (264)
T ss_pred eeee
Confidence 5443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2.2e-15 Score=112.41 Aligned_cols=176 Identities=28% Similarity=0.446 Sum_probs=95.0
Q ss_pred CCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccccccc-ccccCCcEEEeeCCccccccCchhhhcCCCceEEE
Q 042610 127 FNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT-SAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMN 205 (351)
Q Consensus 127 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 205 (351)
.+...+.+++|+++ .+|..+ ..+.+|+.|++++|++.+.+.. +.+++|+.|+++-|++. .+|..++ .+|.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhhh
Confidence 34444444555544 333332 3444455555555544443322 24444555555555554 5666665 677777777
Q ss_pred eecCcccc-CCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCc
Q 042610 206 VSKNSFEG-NIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLH 284 (351)
Q Consensus 206 l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 284 (351)
+.+|.+.. ..|..| -.++.|+.|++.+|.+ +.+|..++.+++|+.|.+.+|++. ..|..++.+..|+
T Consensus 109 ltynnl~e~~lpgnf----------f~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNF----------FYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred ccccccccccCCcch----------hHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 77665542 233222 2333555566665555 344555666777777777777766 6666777777777
Q ss_pred EEEccCcccccCcchhhhccc---CCceeecCCCcccc
Q 042610 285 TLSMSNNHLEGNIPVQCQNLA---GLYIPDISENNLSG 319 (351)
Q Consensus 285 ~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~n~~~~ 319 (351)
+|.+.||+++ .+|..++.+. +=+.+.+.+|....
T Consensus 177 elhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred HHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 7777777776 4554444332 22333444554443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=1.8e-13 Score=113.31 Aligned_cols=232 Identities=22% Similarity=0.307 Sum_probs=152.2
Q ss_pred CCccceeEEEcCCCCCC-----cCCchhhcCCCceEEEccCcccCCC----cChhh------hhcCccceEEEecCCccc
Q 042610 101 LPTFQLKVLSLPNCNLG-----AIPNFLLLQFNLKYLDLSHNKLAGN----FPTWL------LENNTKLELLYLVNNSFS 165 (351)
Q Consensus 101 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~------~~~~~~L~~L~l~~~~l~ 165 (351)
.++..++.+++++|.+. .+...+...+.|+..++++ .+++. +|..+ ...+|+|+.++++.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34457788888888772 2345566666777777765 33322 23321 344668888888887665
Q ss_pred cccc------cccccCCcEEEeeCCcccccc-------------CchhhhcCCCceEEEeecCccccCCCCCccccccch
Q 042610 166 GFQL------TSAQHGLLSLDISSNSFTGEL-------------PQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL 226 (351)
Q Consensus 166 ~~~~------~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 226 (351)
.-.. ..++..|++|.+.+|.+.... .+.+ ...+.|+.+...+|++.+ .+-+.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~-~~~~~Lrv~i~~rNrlen------~ga~~~A 178 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKA-ASKPKLRVFICGRNRLEN------GGATALA 178 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhcc-CCCcceEEEEeecccccc------ccHHHHH
Confidence 4322 135677888888887765211 1111 245688888888888764 2333444
Q ss_pred hhhcCccccceeeeccccccccc----cccccCCCCccEEEccCCcccc----cCCCCccCCCCCcEEEccCcccccCcc
Q 042610 227 ATYMNMTQLWALYLHNDNFSRKI----KDGLLRSTELEDLDISNNILSG----HIPSWMGNFSHLHTLSMSNNHLEGNIP 298 (351)
Q Consensus 227 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~ 298 (351)
..+..++.|+.+.+..|.+.... ...+..+++|+.|++.+|.++. .+...+..|++|+.|.+++|.+.....
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 56667778888888887765443 3456778888889998887763 233456777888899988888876544
Q ss_pred hhh-----hcccCCceeecCCCcccccccccc-----ccCcccEEEccCccc
Q 042610 299 VQC-----QNLAGLYIPDISENNLSGSMISTL-----NLSSVACLYLQNNAL 340 (351)
Q Consensus 299 ~~~-----~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~l~l~~n~~ 340 (351)
.++ ...|.|+++++.+|.++....... ..+.|+.|++.+|++
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 333 346888899988888875333222 678888889988888
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2e-13 Score=119.95 Aligned_cols=191 Identities=26% Similarity=0.338 Sum_probs=125.1
Q ss_pred eEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCcc
Q 042610 107 KVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSF 186 (351)
Q Consensus 107 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~ 186 (351)
...+++.|.+.++|..++.+..|+.+.++.|.+. .+|..+ ..+..|..++++.|++...+.......|+.|.+++|++
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl 155 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKL 155 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCcc
Confidence 4678888889999998888889999999988887 777765 57888889999999998876666777788888888888
Q ss_pred ccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccC
Q 042610 187 TGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISN 266 (351)
Q Consensus 187 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (351)
. .+|..++ ..+.|..+|.+.|.+. .+|.. ++++.+|+.|.+..
T Consensus 156 ~-~lp~~ig-~~~tl~~ld~s~nei~-slpsq----------------------------------l~~l~slr~l~vrR 198 (722)
T KOG0532|consen 156 T-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQ----------------------------------LGYLTSLRDLNVRR 198 (722)
T ss_pred c-cCCcccc-cchhHHHhhhhhhhhh-hchHH----------------------------------hhhHHHHHHHHHhh
Confidence 8 8888877 6778888888887765 33333 33333444444444
Q ss_pred CcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc---ccCcccEEEccCcc
Q 042610 267 NILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL---NLSSVACLYLQNNA 339 (351)
Q Consensus 267 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~L~~l~l~~n~ 339 (351)
|.+. .+|..+..+ .|.+||++.|++. .+|..|.+|.+|++|-|.+|.+...+++++ ...-.++|+.+.|+
T Consensus 199 n~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 199 NHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 4444 333333322 2445555555554 455555555555555555555554444433 34445555555553
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.4e-12 Score=108.13 Aligned_cols=260 Identities=20% Similarity=0.197 Sum_probs=143.8
Q ss_pred ccCCCCCcEEEccCCcCCCC----CchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCc
Q 042610 25 LNNLTHLKVLDVSSNKLSGI----LPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENC 100 (351)
Q Consensus 25 l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~ 100 (351)
+..+..++.+++++|.+... +...+.+.++|+..++++- +++.+. ......+..|- ..+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~-~Ei~e~L~~l~---------------~aL 88 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLK-DEIPEALKMLS---------------KAL 88 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcH-HHHHHHHHHHH---------------HHH
Confidence 34456677777777765422 2233445566777766553 333111 11111111110 012
Q ss_pred CCccceeEEEcCCCCCC-----cCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccC
Q 042610 101 LPTFQLKVLSLPNCNLG-----AIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHG 175 (351)
Q Consensus 101 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 175 (351)
..+++|++++|+.|-+. .+-+.+..+..|+.|.+.+|.+. ...+..++. .|..+. .+ ...+..+.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~--al~~l~--~~-----kk~~~~~~ 158 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGR--ALFELA--VN-----KKAASKPK 158 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHH--HHHHHH--HH-----hccCCCcc
Confidence 22235555555555541 11234444556666666666554 222211100 011111 00 01123455
Q ss_pred CcEEEeeCCcccccc---CchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccc---
Q 042610 176 LLSLDISSNSFTGEL---PQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKI--- 249 (351)
Q Consensus 176 L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--- 249 (351)
|+.+..+.|++.+.. ....+...+.|+.+.+..|.+.. .+.+.+...+..++.|+.|++.+|.++...
T Consensus 159 Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~------eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC------chhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 666666666655211 11223345777888777776642 223445566777888888888888777653
Q ss_pred -cccccCCCCccEEEccCCcccccCCCC----c-cCCCCCcEEEccCcccccC----cchhhhcccCCceeecCCCcc
Q 042610 250 -KDGLLRSTELEDLDISNNILSGHIPSW----M-GNFSHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDISENNL 317 (351)
Q Consensus 250 -~~~~~~~~~L~~L~l~~~~~~~~~~~~----~-~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~ 317 (351)
...+..+++|++|++++|.+....... + ...|+|+.+.+.+|.++.. +...+...+.|++|+|++|++
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 345677889999999999876433222 2 3478999999999999854 233345679999999999998
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.9e-12 Score=110.30 Aligned_cols=207 Identities=22% Similarity=0.196 Sum_probs=106.6
Q ss_pred CccceeEEEcCCCCCCcCC--chhhcCCCceEEEccCcccCCCc-ChhhhhcCccceEEEecCCcccccccc---ccccC
Q 042610 102 PTFQLKVLSLPNCNLGAIP--NFLLLQFNLKYLDLSHNKLAGNF-PTWLLENNTKLELLYLVNNSFSGFQLT---SAQHG 175 (351)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~ 175 (351)
++.+|+.+.+.++.....+ .....+++++.|++++|-+.... ...+.+.+|+|+.|+++.|.+..+... ..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3446666666666554433 35556666666666666554211 123345566666666666665543211 24556
Q ss_pred CcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccc-ccccc
Q 042610 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKI-KDGLL 254 (351)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~ 254 (351)
|+.|.+.+|+++-.-..++...+|+|+.|++..|.. ..... .....++.|++|+|++|.+.... ....+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~--~~~~~--------~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI--ILIKA--------TSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc--cceec--------chhhhhhHHhhccccCCcccccccccccc
Confidence 666666666654222223333566666666666531 11111 11223445666666666554332 23345
Q ss_pred CCCCccEEEccCCcccc-cCCCC-----ccCCCCCcEEEccCcccccC-cchhhhcccCCceeecCCCccc
Q 042610 255 RSTELEDLDISNNILSG-HIPSW-----MGNFSHLHTLSMSNNHLEGN-IPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~-~~~~~-----~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
.++.|+.|+++.|++.. ..|+. ...+++|++|++..|++.+- ....+..+++|+.|.+..|.+.
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 56666666666666553 12222 23456666666666666421 1123444556666666665554
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.9e-12 Score=110.43 Aligned_cols=183 Identities=23% Similarity=0.188 Sum_probs=92.0
Q ss_pred CCCCccEEEccCccccccCC-ccccCCCCCcEEEccCCcCCCCCc--hhhccCCCCCeEEeecccccCCCcchhhhcccc
Q 042610 3 ELKNLFELNFGGNKFEGHLP-QCLNNLTHLKVLDVSSNKLSGILP--SVIANLTSLEYLALYDNRFKGRLFSFYSLANLS 79 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 79 (351)
++++|+.+.|.++.+..... +....|++++.||++.|=+....+ ....++++|+.|+++.|.+....... .-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhhh
Confidence 56777777777777653221 245567788888888775553322 33456788888888877765422221 111344
Q ss_pred cccccccccccccceeeecCcCCccceeEEEcCCCCC-CcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEE
Q 042610 80 KFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNL-GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLY 158 (351)
Q Consensus 80 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 158 (351)
+|+.+.+..|.............++.|+.|++.+|.. ..-......+..|+.|++++|++.........+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 5555555544433222222233444555555555532 111111222335555555555554222222234455555555
Q ss_pred ecCCccccccccc--------cccCCcEEEeeCCcc
Q 042610 159 LVNNSFSGFQLTS--------AQHGLLSLDISSNSF 186 (351)
Q Consensus 159 l~~~~l~~~~~~~--------~~~~L~~L~l~~~~~ 186 (351)
++.+.++++.... .+++|+.|++..|++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555555443221 345555555555555
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=5.7e-11 Score=96.97 Aligned_cols=130 Identities=24% Similarity=0.297 Sum_probs=92.5
Q ss_pred CCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCcc
Q 042610 199 PKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMG 278 (351)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 278 (351)
..|+.+|++.|.++ .+..+ ..-.++++.|+++.|.+.+... +..+++|+.|++++|.++ ....|-.
T Consensus 284 q~LtelDLS~N~I~-~iDES----------vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDES----------VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred hhhhhccccccchh-hhhhh----------hhhccceeEEeccccceeeehh--hhhcccceEeecccchhH-hhhhhHh
Confidence 35677788877765 33322 3344677888888887765432 566788888888888887 6666666
Q ss_pred CCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccc--cccccCcccEEEccCccccccc
Q 042610 279 NFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI--STLNLSSVACLYLQNNALGDRF 344 (351)
Q Consensus 279 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~ 344 (351)
.+.++++|.+++|.+. ....+.++-+|..||+.+|+|..... +..++|.|+.+.+.+|++.+..
T Consensus 350 KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7788888888888775 33456777888888999888865322 2227888888899999887644
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=3.3e-10 Score=109.31 Aligned_cols=299 Identities=19% Similarity=0.179 Sum_probs=136.2
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCc--CCCCCchhhccCCCCCeEEeecccc-cCCCcchhhhccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNK--LSGILPSVIANLTSLEYLALYDNRF-KGRLFSFYSLANLSKFE 82 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~L~ 82 (351)
..+++.+-++.+. .++.. .+++.|++|-+.++. +....++.|..++.|+.||+++|.- ...|.
T Consensus 524 ~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~------------ 589 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS------------ 589 (889)
T ss_pred heeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh------------
Confidence 3455555555554 22222 234467777776664 3433444466677777777766421 11111
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
.++.+-+|++|++.++.+..+|..+.++..|.+|++..+.....++ .+...+++|+.|.+...
T Consensus 590 ----------------~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 590 ----------------SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRS 652 (889)
T ss_pred ----------------HHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecc
Confidence 1233335666666666666666666666666666666555442332 23344666666666543
Q ss_pred ccccc-ccc---ccccCCcEEEeeCCccccccCchhhhcCCCceE----EEeecCccccCCCCCccccccchhhhcCccc
Q 042610 163 SFSGF-QLT---SAQHGLLSLDISSNSFTGELPQNMDIVLPKLVY----MNVSKNSFEGNIPSSIGKMQGLLATYMNMTQ 234 (351)
Q Consensus 163 ~l~~~-~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~----L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (351)
..... ... ..+..|+.+....... .+...+. .+..|.. +.+..+ ...........+..
T Consensus 653 ~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~-----------~~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 653 ALSNDKLLLKELENLEHLENLSITISSV--LLLEDLL-GMTRLRSLLQSLSIEGC-----------SKRTLISSLGSLGN 718 (889)
T ss_pred ccccchhhHHhhhcccchhhheeecchh--HhHhhhh-hhHHHHHHhHhhhhccc-----------ccceeecccccccC
Confidence 31110 011 1223333333322111 0000000 1222221 111111 11111122334456
Q ss_pred cceeeeccccccccccccccC------CCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCc
Q 042610 235 LWALYLHNDNFSRKIKDGLLR------STELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLY 308 (351)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 308 (351)
|+.|.+.++...+........ ++.+..+.+.+|... ..+.+....++|+.|.+..|...+.+.+....+..+.
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK 797 (889)
T ss_pred cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence 666666666554433222111 223333333333332 3334444556777777777766655555555555554
Q ss_pred eeecCCCccccc--------ccccc----ccCcccEEEccCccccccccccCCC
Q 042610 309 IPDISENNLSGS--------MISTL----NLSSVACLYLQNNALGDRFVKLNTS 350 (351)
Q Consensus 309 ~L~l~~n~~~~~--------~~~~~----~~~~L~~l~l~~n~~~~~~p~~~~~ 350 (351)
.+-+..+.+.+. .++.. ..+.++++.+..|+-.+.+|.+.++
T Consensus 798 ~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~ 851 (889)
T KOG4658|consen 798 ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTL 851 (889)
T ss_pred cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccccc
Confidence 433333322211 11111 3444667777777777777766544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=5.3e-10 Score=86.82 Aligned_cols=99 Identities=26% Similarity=0.324 Sum_probs=30.6
Q ss_pred cccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCc-cCCCCCcEEEccCcccccC-cchhhhcccCCcee
Q 042610 233 TQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWM-GNFSHLHTLSMSNNHLEGN-IPVQCQNLAGLYIP 310 (351)
Q Consensus 233 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 310 (351)
.+|+.|++++|.+... +.+..++.|++|++++|.++ .+...+ ..+++|++|.+++|++.+. .-..++.+++|+.|
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 3555566665555443 23444555666666666555 222222 2355566666666555432 11334455556666
Q ss_pred ecCCCcccccccc---cc-ccCcccEEE
Q 042610 311 DISENNLSGSMIS---TL-NLSSVACLY 334 (351)
Q Consensus 311 ~l~~n~~~~~~~~---~~-~~~~L~~l~ 334 (351)
++.+|+++....- .+ .+|+|+.||
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred eccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666655543221 11 555555554
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=6.9e-10 Score=104.67 Aligned_cols=113 Identities=27% Similarity=0.382 Sum_probs=93.5
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecC
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (351)
.++.|+++++.+.+.++..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888888888888888999999999999888888888889999999999999988889889999999999999
Q ss_pred CCcccccccccc--ccCcccEEEccCccccccccc
Q 042610 314 ENNLSGSMISTL--NLSSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 314 ~n~~~~~~~~~~--~~~~L~~l~l~~n~~~~~~p~ 346 (351)
+|.+.+..|..+ ...++..+++.+|+.....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 998888777665 245667888888875444554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=2.2e-10 Score=93.60 Aligned_cols=83 Identities=25% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEE
Q 042610 126 QFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMN 205 (351)
Q Consensus 126 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 205 (351)
...|+++++++|.++ .+.+++ .-.|+++.|++++|.+..+.....+++|+.|++++|.+. .+..+-. .+.+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHh-hhcCEeeee
Confidence 345666677766665 454443 456667777777776666655556666666666666665 4433322 566677777
Q ss_pred eecCccc
Q 042610 206 VSKNSFE 212 (351)
Q Consensus 206 l~~~~~~ 212 (351)
++.|.+.
T Consensus 359 La~N~iE 365 (490)
T KOG1259|consen 359 LAQNKIE 365 (490)
T ss_pred hhhhhHh
Confidence 7666654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=7.9e-10 Score=85.87 Aligned_cols=125 Identities=26% Similarity=0.300 Sum_probs=45.6
Q ss_pred CCCccEEEccCccccccCCcccc-CCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLN-NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
..+++.|+|+++.++ .+. .++ .+.+|+.|++++|+++.. +.+..+++|+.|++++|.++..... +.
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~---l~------ 84 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG---LD------ 84 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH---HH------
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc---hH------
Confidence 345677888888776 332 354 467778888888877743 2466777888888888776531111 10
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCC--chhhcCCCceEEEccCcccCCCcCh---hhhhcCccceEE
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP--NFLLLQFNLKYLDLSHNKLAGNFPT---WLLENNTKLELL 157 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L 157 (351)
..+++|+.|++++|.+..+. ..+..+++|+.|++.+|.+. ..+. .++..+|+|+.|
T Consensus 85 ------------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 85 ------------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp ------------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEE
T ss_pred ------------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhhee
Confidence 12346778888888885543 45677889999999999887 3333 346778999988
Q ss_pred Eec
Q 042610 158 YLV 160 (351)
Q Consensus 158 ~l~ 160 (351)
+-.
T Consensus 146 D~~ 148 (175)
T PF14580_consen 146 DGQ 148 (175)
T ss_dssp TTE
T ss_pred CCE
Confidence 654
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=6e-10 Score=71.20 Aligned_cols=61 Identities=38% Similarity=0.618 Sum_probs=55.5
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRF 65 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 65 (351)
++|++|++++|.+....+..|.++++|++|++++|.+....+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999966678899999999999999999988888999999999999999864
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1.2e-09 Score=98.23 Aligned_cols=178 Identities=29% Similarity=0.423 Sum_probs=86.4
Q ss_pred CCceEEEccCcccCCCcChhhhhcC-ccceEEEecCCcccccc-ccccccCCcEEEeeCCccccccCchhhhcCCCceEE
Q 042610 127 FNLKYLDLSHNKLAGNFPTWLLENN-TKLELLYLVNNSFSGFQ-LTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYM 204 (351)
Q Consensus 127 ~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 204 (351)
..+..+.+.++.+. .++... ... ++|+.|+++.|.+...+ ....++.|+.|+++.|++. +++.... ..++|+.+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhhe
Confidence 34444444444444 333321 112 14444455444444442 3334444455555544444 4443322 34555555
Q ss_pred EeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCc
Q 042610 205 NVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLH 284 (351)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 284 (351)
++++|.+. .+|... .....|+++.+.+|... ..+..+..+..+..+.+.++.+. ..+..++.+++++
T Consensus 192 ~ls~N~i~-~l~~~~----------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~ 258 (394)
T COG4886 192 DLSGNKIS-DLPPEI----------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258 (394)
T ss_pred eccCCccc-cCchhh----------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence 55555444 222211 01112444444444321 11223445555666666666655 3355566666777
Q ss_pred EEEccCcccccCcchhhhcccCCceeecCCCcccccccc
Q 042610 285 TLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMIS 323 (351)
Q Consensus 285 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 323 (351)
.|++++|.+....+ ++...+++.|+++++.+...++.
T Consensus 259 ~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 259 TLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred eecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 77777777763322 66667777777777766654443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.3e-09 Score=69.58 Aligned_cols=58 Identities=36% Similarity=0.441 Sum_probs=32.6
Q ss_pred CCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcc
Q 042610 282 HLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNA 339 (351)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 339 (351)
+|++|++++|.+....+..|..+++|++|++++|.+....+..+ ++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555555555555 55556666655554
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.7e-09 Score=97.34 Aligned_cols=184 Identities=34% Similarity=0.463 Sum_probs=143.3
Q ss_pred cCCccceeEEEcCCCCCCcCCchhhcCC-CceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc-cccCCc
Q 042610 100 CLPTFQLKVLSLPNCNLGAIPNFLLLQF-NLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS-AQHGLL 177 (351)
Q Consensus 100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~ 177 (351)
+.....++.+.+.++.+..++....... +|+.+++++|.+. .++.. ...+++|+.|+++.|++.+.+... ..+.|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 3344578999999999999988878774 9999999999998 66433 468999999999999999987766 889999
Q ss_pred EEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCC
Q 042610 178 SLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST 257 (351)
Q Consensus 178 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 257 (351)
.|++++|++. .+|..+. .+..|+++.+++|... ..+.. +....++..+.+.++.+... +..++.++
T Consensus 190 ~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~----------~~~~~~l~~l~l~~n~~~~~-~~~~~~l~ 255 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSS----------LSNLKNLSGLELSNNKLEDL-PESIGNLS 255 (394)
T ss_pred heeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchh----------hhhcccccccccCCceeeec-cchhcccc
Confidence 9999999999 8887653 3566999999998532 22222 33445666777666665442 45567788
Q ss_pred CccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhh
Q 042610 258 ELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQC 301 (351)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 301 (351)
+++.|++++|.++ .++. ++...+++.|+++++.+....+...
T Consensus 256 ~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 256 NLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 8999999999998 4444 8889999999999999986666543
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=4.5e-11 Score=105.39 Aligned_cols=175 Identities=21% Similarity=0.249 Sum_probs=93.6
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccc
Q 042610 8 FELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLS 87 (351)
Q Consensus 8 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 87 (351)
...|++.|.+. .+|..++.|..|..+.+..|.+. .+|.++.++..|.+++++.|.+...+..++.+. |+.+.+.
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp----Lkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP----LKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc----ceeEEEe
Confidence 34566666665 56666666677777777766666 456667777777777777777665444433321 2222222
Q ss_pred cccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccc
Q 042610 88 METDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGF 167 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 167 (351)
.+..... ...+.....|..|+.+.|.+..+|..+..+.+|+.+.++.|.+. .+|+... .=.|.+|+++.|++..+
T Consensus 152 NNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis~i 226 (722)
T KOG0532|consen 152 NNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKISYL 226 (722)
T ss_pred cCccccC--CcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCceeec
Confidence 2211100 11122333555555555555555555555556666666555555 4554432 23455566666665555
Q ss_pred cccc-cccCCcEEEeeCCccccccCchh
Q 042610 168 QLTS-AQHGLLSLDISSNSFTGELPQNM 194 (351)
Q Consensus 168 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 194 (351)
+... .+..|+.|.+++|.+. .-|.++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHH
Confidence 4432 4555666666666555 444443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=4.6e-09 Score=99.11 Aligned_cols=89 Identities=31% Similarity=0.535 Sum_probs=84.3
Q ss_pred CccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEcc
Q 042610 258 ELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQ 336 (351)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~ 336 (351)
.++.|+++++.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+ .+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37899999999999999999999999999999999999999999999999999999999999888877 89999999999
Q ss_pred Cccccccccc
Q 042610 337 NNALGDRFVK 346 (351)
Q Consensus 337 ~n~~~~~~p~ 346 (351)
+|+++|.+|.
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 9999999984
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=2.5e-09 Score=103.32 Aligned_cols=294 Identities=23% Similarity=0.183 Sum_probs=165.8
Q ss_pred CCCCccEEEccCcc--ccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccc
Q 042610 3 ELKNLFELNFGGNK--FEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSK 80 (351)
Q Consensus 3 ~l~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 80 (351)
++++|++|-+.++. +.......|..+|.|+.||+++|.--+.+|..++.+-+||+|+++++.+...|. .+.++++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~---~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS---GLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch---HHHHHHh
Confidence 45678888888885 443444457788999999999876556788888899999999999888765444 5677778
Q ss_pred ccccccccccccceeeecCcCCccceeEEEcCCCCC---CcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccce--
Q 042610 81 FEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNL---GAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLE-- 155 (351)
Q Consensus 81 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~-- 155 (351)
|..|++......... ......+.+|++|.+..... ...-..+..+.+|+.+........ +-.. +....+|.
T Consensus 620 L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~e~-l~~~~~L~~~ 695 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LLED-LLGMTRLRSL 695 (889)
T ss_pred hheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hHhh-hhhhHHHHHH
Confidence 888888766543333 33344577888888877652 112234455666666666443320 1111 11223332
Q ss_pred --EEEecCCcc-ccccccccccCCcEEEeeCCccccccCch----hhhc-CCCceEEEeecCccccCCCCCccccccchh
Q 042610 156 --LLYLVNNSF-SGFQLTSAQHGLLSLDISSNSFTGELPQN----MDIV-LPKLVYMNVSKNSFEGNIPSSIGKMQGLLA 227 (351)
Q Consensus 156 --~L~l~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 227 (351)
.+.+..+.. +.......+..|+.|.+.++.+......+ .... ++++..+...+|..-. .+ .
T Consensus 696 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l----------~ 764 (889)
T KOG4658|consen 696 LQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DL----------T 764 (889)
T ss_pred hHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-cc----------c
Confidence 222222221 12223347778888888887765211111 0001 2333333333332210 00 1
Q ss_pred hhcCccccceeeeccccccccccccccCCCCccEEEccCCccccc-CCCCccCCCCCcEEEccCcccccCcc----hhhh
Q 042610 228 TYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGH-IPSWMGNFSHLHTLSMSNNHLEGNIP----VQCQ 302 (351)
Q Consensus 228 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~ 302 (351)
...-.++|+.|++..+...+.+.+....+..+..+.+..+.+.+. .....+.++++..+.+++=.+. .+. +.++
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~-~~~ve~~p~l~ 843 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLE-ELIVEECPKLG 843 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchh-heehhcCcccc
Confidence 112345788888888877776666566666666655655555443 3445556666665555544332 111 1135
Q ss_pred cccCCceeecCCC
Q 042610 303 NLAGLYIPDISEN 315 (351)
Q Consensus 303 ~~~~L~~L~l~~n 315 (351)
.+|.+..+.+.+|
T Consensus 844 ~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 844 KLPLLSTLTIVGC 856 (889)
T ss_pred cCccccccceecc
Confidence 5666667776665
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=4.4e-09 Score=94.88 Aligned_cols=226 Identities=24% Similarity=0.218 Sum_probs=150.7
Q ss_pred cCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEE
Q 042610 100 CLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSL 179 (351)
Q Consensus 100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L 179 (351)
+..+.+|+.+++.++.+..+...+..+++|+.+++++|.+. .+.. +..++.|+.|++.+|.+..+.....+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhccCCccchhhhcc
Confidence 56667899999999999888766788889999999999988 4544 45677899999999999988777778999999
Q ss_pred EeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCc
Q 042610 180 DISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTEL 259 (351)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 259 (351)
++++|.+. .+.......+.+++.+.+.+|.+...- .+ .....+..+++..+.+....+.....+.+|
T Consensus 168 ~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~----------~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L 234 (414)
T KOG0531|consen 168 DLSYNRIV-DIENDELSELISLEELDLGGNSIREIE--GL----------DLLKKLVLLSLLDNKISKLEGLNELVMLHL 234 (414)
T ss_pred cCCcchhh-hhhhhhhhhccchHHHhccCCchhccc--ch----------HHHHHHHHhhcccccceeccCcccchhHHH
Confidence 99999887 444310135788888888888765211 11 111233333555555544332111111137
Q ss_pred cEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccc---cc--ccccCcccEEE
Q 042610 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSM---IS--TLNLSSVACLY 334 (351)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~--~~~~~~L~~l~ 334 (351)
+.+.+.++.+. ..+..+..+..+..+++..+.+... ..+...+.+..+....+.+.... .. ....+.++.+.
T Consensus 235 ~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 235 RELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 88888888776 4434556677788888888777632 22445566777777777665321 11 11567778888
Q ss_pred ccCccccccc
Q 042610 335 LQNNALGDRF 344 (351)
Q Consensus 335 l~~n~~~~~~ 344 (351)
+.+|+.....
T Consensus 312 ~~~~~~~~~~ 321 (414)
T KOG0531|consen 312 LELNPIRKIS 321 (414)
T ss_pred cccCcccccc
Confidence 8887765443
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=8.6e-10 Score=93.96 Aligned_cols=297 Identities=18% Similarity=0.098 Sum_probs=137.3
Q ss_pred CCcEEEccCCcCCCCCc--hhhccCCCCCeEEeecccccCCCcchhhh-cccccccccccccccccceeeec-CcCCccc
Q 042610 30 HLKVLDVSSNKLSGILP--SVIANLTSLEYLALYDNRFKGRLFSFYSL-ANLSKFEAFQLSMETDLLQVEIE-NCLPTFQ 105 (351)
Q Consensus 30 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~ 105 (351)
.|+.|.++|++-.+.-+ ..-.+++++++|++.+|.... ......+ +.+++|+.+.+..+..++..... ....+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT-d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT-DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc-HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35555565554221111 122345666666666654221 1111222 33566666666655544443333 2334556
Q ss_pred eeEEEcCCCCC---CcCCchhhcCCCceEEEccCcccCC-CcChhhhhcCccceEEEecCCcccc-cc---ccccccCCc
Q 042610 106 LKVLSLPNCNL---GAIPNFLLLQFNLKYLDLSHNKLAG-NFPTWLLENNTKLELLYLVNNSFSG-FQ---LTSAQHGLL 177 (351)
Q Consensus 106 L~~L~l~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~-~~---~~~~~~~L~ 177 (351)
|+++++++|.- ..+......+..++.+...+|.-.+ ..-......+..+.++++.+|.... .. .......|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 66666666653 1222333444455666555543210 0111112334455666655553222 11 112556677
Q ss_pred EEEeeCCc-cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccc--cccccc
Q 042610 178 SLDISSNS-FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRK--IKDGLL 254 (351)
Q Consensus 178 ~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~ 254 (351)
.|..+++. +.+.+-..+...+++|+.+.+..|+-... ..|. ..-.+++.|+.+++.++..... +...-.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd--~~ft------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD--RGFT------MLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh--hhhh------hhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 77777654 33333344455677788877777752110 0110 1122444566666655543222 111222
Q ss_pred CCCCccEEEccCCcc-ccc----CCCCccCCCCCcEEEccCcccc-cCcchhhhcccCCceeecCCCc-ccccccccc--
Q 042610 255 RSTELEDLDISNNIL-SGH----IPSWMGNFSHLHTLSMSNNHLE-GNIPVQCQNLAGLYIPDISENN-LSGSMISTL-- 325 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~-~~~----~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~-- 325 (351)
.++.|+.+.++.|.. ++. ....-.....++.+.+++++.. +.....+..+++|+.+++-+|+ ++......+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 455566666665532 211 0111123455666666666544 2233445566666666666663 333333333
Q ss_pred ccCcccEEEc
Q 042610 326 NLSSVACLYL 335 (351)
Q Consensus 326 ~~~~L~~l~l 335 (351)
++|++++.-+
T Consensus 450 ~lp~i~v~a~ 459 (483)
T KOG4341|consen 450 HLPNIKVHAY 459 (483)
T ss_pred hCccceehhh
Confidence 5666555433
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.66 E-value=1.4e-08 Score=81.99 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccc-----cccccCCCCccEEEccCCcccc-
Q 042610 198 LPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKI-----KDGLLRSTELEDLDISNNILSG- 271 (351)
Q Consensus 198 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~- 271 (351)
-|.|+.+...+|++.. .+ ..-....+.....|+.+.+..|.+.... ...+..+.+|+.|++.+|.++-
T Consensus 156 kp~Le~vicgrNRlen-gs-----~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 156 KPKLEVVICGRNRLEN-GS-----KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred CCCceEEEeccchhcc-Cc-----HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 3556666666665542 11 1111122334445666666666554431 2233456677777777776652
Q ss_pred ---cCCCCccCCCCCcEEEccCcccccCcchhh------hcccCCceeecCCCccccccccc-----c---ccCcccEEE
Q 042610 272 ---HIPSWMGNFSHLHTLSMSNNHLEGNIPVQC------QNLAGLYIPDISENNLSGSMIST-----L---NLSSVACLY 334 (351)
Q Consensus 272 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~n~~~~~~~~~-----~---~~~~L~~l~ 334 (351)
.+...+..|+.|++|.+.+|.+......++ ...|+|+.|.+.+|...+..... + ++|-|..+.
T Consensus 230 gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le 309 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLE 309 (388)
T ss_pred hHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHH
Confidence 122344556667777777776664433332 12466777777777554322211 1 566666667
Q ss_pred ccCcccc
Q 042610 335 LQNNALG 341 (351)
Q Consensus 335 l~~n~~~ 341 (351)
+.||++.
T Consensus 310 ~ngNr~~ 316 (388)
T COG5238 310 RNGNRIK 316 (388)
T ss_pred HccCcch
Confidence 7777664
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-09 Score=88.90 Aligned_cols=64 Identities=30% Similarity=0.228 Sum_probs=28.2
Q ss_pred CccceeEEEcCCCCC-CcCCchhhcCCCceEEEccCcc-cCCCcChhhhhcCccceEEEecCCccc
Q 042610 102 PTFQLKVLSLPNCNL-GAIPNFLLLQFNLKYLDLSHNK-LAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 102 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
+|.+|+.|.+.|..+ ..+...+.+-.+|+.++++.+. ++......++..|+.|..|++++|.+.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 333444444444444 2233334444455555555443 221222233445555555555555443
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=9.6e-09 Score=84.01 Aligned_cols=106 Identities=23% Similarity=0.146 Sum_probs=51.6
Q ss_pred EEEccCCcCCCCCc-hhhc-cCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccceeEEE
Q 042610 33 VLDVSSNKLSGILP-SVIA-NLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLS 110 (351)
Q Consensus 33 ~L~l~~~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 110 (351)
.+.+.++.+..... ..|+ ..+.++.+|+.+|.+..+......+.++|. |+.|+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~-------------------------l~~LN 103 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPA-------------------------LTTLN 103 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCcc-------------------------ceEee
Confidence 44555555543311 2222 457777777777776652222333444554 45555
Q ss_pred cCCCCCCcCCchh-hcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc
Q 042610 111 LPNCNLGAIPNFL-LLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 111 l~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (351)
++.|++...-..+ ....+|+++.+.+..+...-.......+|.++.|+++.|.
T Consensus 104 ls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 104 LSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 5555442111111 1233566666655555433334444555666666665553
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.3e-09 Score=88.98 Aligned_cols=176 Identities=21% Similarity=0.183 Sum_probs=78.9
Q ss_pred CcEEEccCCcCCCC-CchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeec-CcCCccceeE
Q 042610 31 LKVLDVSSNKLSGI-LPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIE-NCLPTFQLKV 108 (351)
Q Consensus 31 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~ 108 (351)
++++|+++..++-. .-..++.+++|+.|.+.++++.. .-...++.-..|+.+++..+.+....... -+.+|+.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 44455544443311 11223444455555554444431 11122333344444444444433332222 2344555666
Q ss_pred EEcCCCCCC-cCCc--hhhcCCCceEEEccCccc--CCCcChhhhhcCccceEEEecCCccccc---cccccccCCcEEE
Q 042610 109 LSLPNCNLG-AIPN--FLLLQFNLKYLDLSHNKL--AGNFPTWLLENNTKLELLYLVNNSFSGF---QLTSAQHGLLSLD 180 (351)
Q Consensus 109 L~l~~~~~~-~~~~--~~~~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~ 180 (351)
|++++|... +... .-.--++|..|+++++.- ...........+|++.+|+++.|..-.. .....++-|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666666551 1110 111123566666666532 1122223345567777777765532221 1223566677777
Q ss_pred eeCCccccccCchh--hhcCCCceEEEeecCc
Q 042610 181 ISSNSFTGELPQNM--DIVLPKLVYMNVSKNS 210 (351)
Q Consensus 181 l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 210 (351)
++.|-.. .|..+ +...|.|.+|++.++-
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 7665321 11111 2256777888777663
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=3.2e-09 Score=90.56 Aligned_cols=299 Identities=16% Similarity=0.101 Sum_probs=174.9
Q ss_pred CccEEEccCcccccc--CCccccCCCCCcEEEccCCc-CCCCCchhhc-cCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 6 NLFELNFGGNKFEGH--LPQCLNNLTHLKVLDVSSNK-LSGILPSVIA-NLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
.|+.|.+.|+.-... ......++|++++|++.+|. +++..-..++ .+++|++|++..|..........--..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 467788888754321 22233468999999998884 4433222333 5899999999886432211112233458899
Q ss_pred cccccccccccceeeecC-cCCccceeEEEcCCCCCCcC---CchhhcCCCceEEEccCcccCCCcC-hhhhhcCccceE
Q 042610 82 EAFQLSMETDLLQVEIEN-CLPTFQLKVLSLPNCNLGAI---PNFLLLQFNLKYLDLSHNKLAGNFP-TWLLENNTKLEL 156 (351)
Q Consensus 82 ~~l~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~ 156 (351)
.++.++.++......+.. ...+..++.+.+.||.-.+. ...-..+.-+..+++..|....... ..+..++..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 999999887665543332 23444566666665432111 1111222335556655554321221 122334667788
Q ss_pred EEecCCccccccc----cccccCCcEEEeeCCc-cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcC
Q 042610 157 LYLVNNSFSGFQL----TSAQHGLLSLDISSNS-FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMN 231 (351)
Q Consensus 157 L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (351)
+..+++.-..... ....++|+.+.+.+++ +++..-..+...++.|+.+++..+...-.. .+...-.+
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--------tL~sls~~ 370 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--------TLASLSRN 370 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--------hHhhhccC
Confidence 8877664322211 2256788888888875 332222233446778888888877542100 12233457
Q ss_pred ccccceeeeccccccccc-----cccccCCCCccEEEccCCccc-ccCCCCccCCCCCcEEEccCcccccC--cchhhhc
Q 042610 232 MTQLWALYLHNDNFSRKI-----KDGLLRSTELEDLDISNNILS-GHIPSWMGNFSHLHTLSMSNNHLEGN--IPVQCQN 303 (351)
Q Consensus 232 ~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~ 303 (351)
+++|+.+.++.|...... ...-..+..++.+.+.++... +.....+..+++|+++++-+|+.... +.....+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 888999999987644332 223345678999999998754 34445667888999999999865422 2233467
Q ss_pred ccCCceeec
Q 042610 304 LAGLYIPDI 312 (351)
Q Consensus 304 ~~~L~~L~l 312 (351)
+|++++..+
T Consensus 451 lp~i~v~a~ 459 (483)
T KOG4341|consen 451 LPNIKVHAY 459 (483)
T ss_pred Cccceehhh
Confidence 888877553
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=3.6e-08 Score=89.02 Aligned_cols=193 Identities=26% Similarity=0.283 Sum_probs=94.0
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
..++.+.+..+.+. .+-..+..+.++..+++.++++..+.. .+..+++|++|++++|.++. +..+..++.|+.+
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~----i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK----LEGLSTLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccc----ccchhhccchhhh
Confidence 44455556666555 223336667777888888777774422 25667788888887777653 2233444445555
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcCCch-hhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNF-LLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (351)
++.+|....... +..+..|+.+++++|.+..+... ...+.+++.+.+.+|.+. .+.. ...+..+..+.+..|.
T Consensus 146 ~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISDISG---LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcchhccC---CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccc--hHHHHHHHHhhccccc
Confidence 544444222211 22244555555555555444332 344445555555555554 2222 1223333333444444
Q ss_pred cccccccccccC--CcEEEeeCCccccccCchhhhcCCCceEEEeecCcc
Q 042610 164 FSGFQLTSAQHG--LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSF 211 (351)
Q Consensus 164 l~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 211 (351)
+..+........ |+.+.+.++++. ..+..+ ..+..+..+++..+.+
T Consensus 220 i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~-~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 220 ISKLEGLNELVMLHLRELYLSGNRIS-RSPEGL-ENLKNLPVLDLSSNRI 267 (414)
T ss_pred ceeccCcccchhHHHHHHhcccCccc-cccccc-cccccccccchhhccc
Confidence 444433333332 555555555554 221111 1344445555554443
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1.3e-07 Score=77.65 Aligned_cols=185 Identities=15% Similarity=0.196 Sum_probs=104.1
Q ss_pred cCccceEEEecCCccccccccc----cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccc
Q 042610 150 NNTKLELLYLVNNSFSGFQLTS----AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGL 225 (351)
Q Consensus 150 ~~~~L~~L~l~~~~l~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 225 (351)
.++.++.+++.+|.++++...+ ++|.|+.|+++.|.+...+ ...-....+|+.+.+++..+.. +..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w---------~~~ 138 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSW---------TQS 138 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCCh---------hhh
Confidence 3455666666666666554432 5666666666666654222 1111246688888887776542 222
Q ss_pred hhhhcCccccceeeeccccccccccc--ccc-CCCCccEEEccCCcccc--cCCCCccCCCCCcEEEccCcccccC-cch
Q 042610 226 LATYMNMTQLWALYLHNDNFSRKIKD--GLL-RSTELEDLDISNNILSG--HIPSWMGNFSHLHTLSMSNNHLEGN-IPV 299 (351)
Q Consensus 226 ~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~ 299 (351)
...+..+|.+++|.++.|+......+ ... .-+.+.+++.-+|...- .....-.-++++..+-+..|++... .-.
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek 218 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEK 218 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcc
Confidence 23455667777777777643322111 111 12356666666665320 1111113356777777888877643 223
Q ss_pred hhhcccCCceeecCCCccccccc-ccc-ccCcccEEEccCccccccc
Q 042610 300 QCQNLAGLYIPDISENNLSGSMI-STL-NLSSVACLYLQNNALGDRF 344 (351)
Q Consensus 300 ~~~~~~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~l~l~~n~~~~~~ 344 (351)
.....|.+-.|+|+.+++..... +.+ ++++|+-|.+.++++.+.+
T Consensus 219 ~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 45556777788888887776433 233 7888888888888876554
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.32 E-value=2e-07 Score=88.16 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=91.0
Q ss_pred CCccEEEccCcccc-ccCCcccc-CCCCCcEEEccCCcCCCC-CchhhccCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 5 KNLFELNFGGNKFE-GHLPQCLN-NLTHLKVLDVSSNKLSGI-LPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 5 ~~L~~L~l~~~~~~-~~~~~~l~-~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
.+|++|+++|.... ...|..++ -+|.|+.|.+.+-.+... +.....++++|.+||+++++++.. .+..++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 36778888876442 22233334 378888888888766422 233455788888888888876642 456677777
Q ss_pred cccccccccccceeeecCcCCccceeEEEcCCCCCCcCC-------chhhcCCCceEEEccCcccCCCcChhhhhcCccc
Q 042610 82 EAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-------NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKL 154 (351)
Q Consensus 82 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 154 (351)
+.|.+..-..........+..+++|+.||++......-+ +.-..+|.|+.||.+++.+.....+.+....|+|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 777776655555555556667777777777775542211 2222356777777776665544444444445555
Q ss_pred eEEE
Q 042610 155 ELLY 158 (351)
Q Consensus 155 ~~L~ 158 (351)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 5443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=1e-06 Score=71.54 Aligned_cols=192 Identities=19% Similarity=0.178 Sum_probs=122.3
Q ss_pred hhhcCCCceEEEccCcccCCCcChh---hhhcCccceEEEecCCcccccccc---------------ccccCCcEEEeeC
Q 042610 122 FLLLQFNLKYLDLSHNKLAGNFPTW---LLENNTKLELLYLVNNSFSGFQLT---------------SAQHGLLSLDISS 183 (351)
Q Consensus 122 ~~~~~~~L~~l~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~---------------~~~~~L~~L~l~~ 183 (351)
.+.++|+|+.+++++|.+....|+. +++....|++|.+++|.+..++.. ..-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3455667777777777665455443 244556677777777665433211 1456788888888
Q ss_pred CccccccCchh----hhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccc----ccccC
Q 042610 184 NSFTGELPQNM----DIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIK----DGLLR 255 (351)
Q Consensus 184 ~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~ 255 (351)
|++. ..+... +..-.+|+.+.+..|.+.. ..+..+ ......++.+|+.|++.+|.++.... ..++.
T Consensus 167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrp---egv~~L--~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 167 NRLE-NGSKELSAALLESHENLKEVKIQQNGIRP---EGVTML--AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred chhc-cCcHHHHHHHHHhhcCceeEEeeecCcCc---chhHHH--HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 8876 444322 2122478888888887752 222211 12345677889999999998876543 34566
Q ss_pred CCCccEEEccCCcccccCCC----Cc--cCCCCCcEEEccCcccccCc------chhh-hcccCCceeecCCCcccc
Q 042610 256 STELEDLDISNNILSGHIPS----WM--GNFSHLHTLSMSNNHLEGNI------PVQC-QNLAGLYIPDISENNLSG 319 (351)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~----~~--~~l~~L~~L~l~~~~~~~~~------~~~~-~~~~~L~~L~l~~n~~~~ 319 (351)
++.|.+|.+.+|-++..... .| ...++|+.|....|.+.+.+ +... .++|-|..|.+++|++..
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 78899999999977633222 22 24578888888888765332 2221 467889999999999875
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=1.1e-07 Score=86.95 Aligned_cols=112 Identities=32% Similarity=0.369 Sum_probs=84.4
Q ss_pred chhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcc
Q 042610 225 LLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNL 304 (351)
Q Consensus 225 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 304 (351)
+...+.-++.++.|+|++|.+.+.. .+..+++|++||++.|.++ .+|..-..-.+|+.|.+++|.++.. -.++++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhh
Confidence 3345556678999999999987754 5677899999999999988 6554322234599999999988732 346789
Q ss_pred cCCceeecCCCccccccc-ccc-ccCcccEEEccCcccc
Q 042610 305 AGLYIPDISENNLSGSMI-STL-NLSSVACLYLQNNALG 341 (351)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~l~l~~n~~~ 341 (351)
.+|+.||+++|-+.+-.- ..+ .+..|+.|+++||++.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999997765222 112 6888999999999975
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=3.7e-08 Score=89.95 Aligned_cols=154 Identities=27% Similarity=0.327 Sum_probs=79.5
Q ss_pred CCCCCCccEEEccCccccccCC-cccc---------------------------C---CCCCcEEEccCCcCCCCCchhh
Q 042610 1 ICELKNLFELNFGGNKFEGHLP-QCLN---------------------------N---LTHLKVLDVSSNKLSGILPSVI 49 (351)
Q Consensus 1 l~~l~~L~~L~l~~~~~~~~~~-~~l~---------------------------~---~~~L~~L~l~~~~~~~~~~~~~ 49 (351)
|..|+.|++|.+.+|.+...-. ..+. + ...|...+.++|.+. ....++
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~SL 183 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDESL 183 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHHH
Confidence 3468899999999997753100 0000 0 123444444444444 222345
Q ss_pred ccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCc
Q 042610 50 ANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNL 129 (351)
Q Consensus 50 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 129 (351)
.-++.|++|++++|++.. ...+..++ .|+.||+++|.+..+|..-..--+|
T Consensus 184 qll~ale~LnLshNk~~~----v~~Lr~l~-------------------------~LkhLDlsyN~L~~vp~l~~~gc~L 234 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK----VDNLRRLP-------------------------KLKHLDLSYNCLRHVPQLSMVGCKL 234 (1096)
T ss_pred HHHHHhhhhccchhhhhh----hHHHHhcc-------------------------cccccccccchhccccccchhhhhh
Confidence 555666666666666542 11333343 5555666666555554322222246
Q ss_pred eEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc---cccCCcEEEeeCCccc
Q 042610 130 KYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS---AQHGLLSLDISSNSFT 187 (351)
Q Consensus 130 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~L~~L~l~~~~~~ 187 (351)
+.|.+++|.++ .+-+ +.++.+|+.|+++.|-+.++.... .+..|..|++.||.+.
T Consensus 235 ~~L~lrnN~l~-tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALT-TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHH-hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66666666554 3333 345666666666666555543322 4445556666666553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=6.1e-06 Score=48.24 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=18.4
Q ss_pred CCcEEEccCcccccCcchhhhcccCCceeecCCCcccc
Q 042610 282 HLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSG 319 (351)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 319 (351)
+|++|++++|++. .+|..++++++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 344445555555555555555543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=3.1e-07 Score=66.65 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=65.1
Q ss_pred CccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCcee
Q 042610 231 NMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIP 310 (351)
Q Consensus 231 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 310 (351)
....|..+++++|.+.+..+.....++.++.|++++|.++ .+|..+..++.|+.|.++.|++. ..|..+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 3344555566665554443333344556777777777777 66666777777777777777776 455555556677777
Q ss_pred ecCCCccccccccccccCcccEEEccCcccccc
Q 042610 311 DISENNLSGSMISTLNLSSVACLYLQNNALGDR 343 (351)
Q Consensus 311 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 343 (351)
+..+|.....+...+-.+....+.++++++.|.
T Consensus 129 ds~~na~~eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 129 DSPENARAEIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred cCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence 777776665444433223333334455655544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=5.4e-06 Score=48.44 Aligned_cols=36 Identities=42% Similarity=0.648 Sum_probs=15.8
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCC
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLS 42 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 42 (351)
+|++|++++|.++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4445555555444 23333444444444444444444
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=9.5e-05 Score=65.07 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred hhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc-cccccccccccCCcEEEeeCC
Q 042610 123 LLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS-FSGFQLTSAQHGLLSLDISSN 184 (351)
Q Consensus 123 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~ 184 (351)
+..+.+++.|++++|.+. .+|. -.++|+.|.+.+|. +...+ ...+++|+.|.+.+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP-~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLP-GSIPEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCC-chhhhhhhheEccCc
Confidence 334566777777777665 5552 23457777776543 22221 123456666666665
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=4.2e-06 Score=79.39 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=31.4
Q ss_pred CcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc
Q 042610 99 NCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 99 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (351)
.+.++++|..||+++++++.+ .++..+++|+.|.+++=.+...-.-....++++|+.||++...
T Consensus 168 lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 168 LCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 344555556666666555544 4455555566655555444311111112345555556555543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=3.2e-05 Score=60.24 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=68.9
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
+...+||++|.+. ..+ .|..++.|.+|.+.+|+|+.+.|.--..+++|+.|.+.+|++.. ......+..+++|+.+.
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCCccceee
Confidence 4456777887775 222 36778888889999888887777655567888999998887764 33344555555555554
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCCCcC----CchhhcCCCceEEEccCccc
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI----PNFLLLQFNLKYLDLSHNKL 139 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~l~l~~~~~ 139 (351)
+- +|....- .-.+..+|+|+.||+++...
T Consensus 120 ll-------------------------~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LL-------------------------GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ec-------------------------CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 44 4443211 13456677888888876543
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=1.5e-06 Score=63.23 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=80.3
Q ss_pred cceeeeccccccc--cccccccCCCCccEEEccCCcccccCCCCcc-CCCCCcEEEccCcccccCcchhhhcccCCceee
Q 042610 235 LWALYLHNDNFSR--KIKDGLLRSTELEDLDISNNILSGHIPSWMG-NFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPD 311 (351)
Q Consensus 235 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 311 (351)
+..++++.|.+-. ..+..+....+|+.+++++|.+. .+|..|. .++..+.+.+++|.+. .+|..++.++.|+.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 4455666654432 22344556678999999999998 6666555 4678999999999999 7888899999999999
Q ss_pred cCCCccccccccccccCcccEEEccCcccc
Q 042610 312 ISENNLSGSMISTLNLSSVACLYLQNNALG 341 (351)
Q Consensus 312 l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 341 (351)
++.|.+...+.-.+.+.++..|+..+|...
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 999999875554447788888888888653
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00022 Score=62.83 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=60.4
Q ss_pred CCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC-ccccccccccccCCcEE
Q 042610 101 LPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN-SFSGFQLTSAQHGLLSL 179 (351)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~~L 179 (351)
..+.+++.|++++|.+..+|. -.++|+.|.+++|.....+|..+ .++|+.|.+++| .+.. .+..|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~s-----LP~sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISG-----LPESVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccc-----cccccceE
Confidence 345688999999998888882 22379999998866544677543 468999999988 4443 34568888
Q ss_pred EeeCCccccccCchhhhcCCCceEEEee
Q 042610 180 DISSNSFTGELPQNMDIVLPKLVYMNVS 207 (351)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 207 (351)
++..+... .++ .-+++|+.|.+.
T Consensus 118 ~L~~n~~~-~L~----~LPssLk~L~I~ 140 (426)
T PRK15386 118 EIKGSATD-SIK----NVPNGLTSLSIN 140 (426)
T ss_pred EeCCCCCc-ccc----cCcchHhheecc
Confidence 87655443 221 123456666664
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=0.00011 Score=57.24 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=61.8
Q ss_pred ceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCc-chhhhcccCCceeecCC
Q 042610 236 WALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNI-PVQCQNLAGLYIPDISE 314 (351)
Q Consensus 236 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~ 314 (351)
..+++++|.+... ..|..++.|..|.+..|.++...|..-.-+++|+.|.+.+|.+.+.. -.-++.||.|+.|.+-+
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3444554444322 23455667777777777777555555455677777777777776321 13356677788888777
Q ss_pred Ccccccccc---cc-ccCcccEEEccCc
Q 042610 315 NNLSGSMIS---TL-NLSSVACLYLQNN 338 (351)
Q Consensus 315 n~~~~~~~~---~~-~~~~L~~l~l~~n 338 (351)
|.++...-- .+ .+|+|++||+++-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 777653221 11 6778888877764
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.00098 Score=49.51 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred CccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCcee
Q 042610 231 NMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIP 310 (351)
Q Consensus 231 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 310 (351)
.++.|+.+.+.+. +.......+..+++++.+.+.+ .+.......|..+++++.+.+..+ +.......+..+ .++.+
T Consensus 33 ~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence 3445555555542 3333334455555666666654 222233345555666666666554 433344445555 66666
Q ss_pred ecCC
Q 042610 311 DISE 314 (351)
Q Consensus 311 ~l~~ 314 (351)
.+..
T Consensus 109 ~~~~ 112 (129)
T PF13306_consen 109 NIPS 112 (129)
T ss_dssp E-TT
T ss_pred EECC
Confidence 6554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.32 E-value=0.00088 Score=49.75 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=42.0
Q ss_pred cccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCc
Q 042610 24 CLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPT 103 (351)
Q Consensus 24 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 103 (351)
.|.++.+|+.+.+.. .+..+...+|.++++|+.+++..+ +. ......+..++.++.+.+.. .........+..+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc--ccccccccccccc
Confidence 344555566666553 333334445555555666665443 22 11222334444444444432 1222223334445
Q ss_pred cceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccce
Q 042610 104 FQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 155 (351)
Q Consensus 104 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 155 (351)
.+|+.+.+..+ +..++ ..+... +++.+.+.. .+. .++...|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 56666666543 33332 234444 667776654 333 45555566665553
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.24 E-value=5.9e-05 Score=69.82 Aligned_cols=61 Identities=23% Similarity=0.180 Sum_probs=27.1
Q ss_pred cCccceEEEecCCc-cccccccc---cccCCcEEEeeCCc-cccccCchhhhcCCCceEEEeecCc
Q 042610 150 NNTKLELLYLVNNS-FSGFQLTS---AQHGLLSLDISSNS-FTGELPQNMDIVLPKLVYMNVSKNS 210 (351)
Q Consensus 150 ~~~~L~~L~l~~~~-l~~~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~ 210 (351)
.+.+|+.++++++. +++..... .+++|+.|.+.++. +++..-..+...++.|+.|+++.|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34455555555544 22221111 23455555544444 3333333344445555555555553
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=3e-05 Score=63.44 Aligned_cols=102 Identities=24% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccce
Q 042610 27 NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQL 106 (351)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 106 (351)
.+.+.+.|+..||++.++. ...+|+.|+.|.++-|+++. ...+..|++|+++.+..|..........+.++++|
T Consensus 17 dl~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIss----L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISS----LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCCCccHHH--HHHhcccceeEEeecccccc----chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3557777888888877552 34577888888888877653 33466677777777777776666666677777777
Q ss_pred eEEEcCCCCC-CcC-----CchhhcCCCceEEEc
Q 042610 107 KVLSLPNCNL-GAI-----PNFLLLQFNLKYLDL 134 (351)
Q Consensus 107 ~~L~l~~~~~-~~~-----~~~~~~~~~L~~l~l 134 (351)
+.|+|..|.. .+- ...+..+|+|+.||=
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 7777776654 111 134666777777754
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00024 Score=57.73 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=46.0
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCC--cCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSN--KLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
+.+++.+++.++.++. . ..+..+++|+.|.++.| ++.+.++.....+++|+++++++|.+.. ......+..+.+|
T Consensus 42 ~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcch
Confidence 4455566666665541 1 12445677888888877 5554444444566888888888887653 3333344444444
Q ss_pred cccccc
Q 042610 82 EAFQLS 87 (351)
Q Consensus 82 ~~l~l~ 87 (351)
..+++.
T Consensus 119 ~~Ldl~ 124 (260)
T KOG2739|consen 119 KSLDLF 124 (260)
T ss_pred hhhhcc
Confidence 444433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=6.8e-05 Score=61.41 Aligned_cols=97 Identities=29% Similarity=0.347 Sum_probs=70.6
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc---cccCCcEEEe
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS---AQHGLLSLDI 181 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~L~~L~l 181 (351)
+.+.|+..||.+..+. ...+++.|+.|.++-|.++ .+.. +..|++|+.|.+..|.|.++.... .+++|..|++
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 5677788888876552 3566788999999988887 4443 578899999999999888776554 6788888999
Q ss_pred eCCccccccCc----hhhhcCCCceEEE
Q 042610 182 SSNSFTGELPQ----NMDIVLPKLVYMN 205 (351)
Q Consensus 182 ~~~~~~~~~~~----~~~~~l~~L~~L~ 205 (351)
..|...+..+. .+..-+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 88876544332 2333678888875
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00091 Score=54.47 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=63.6
Q ss_pred ccccceeeeccccccccccccccCCCCccEEEccCC--cccccCCCCccCCCCCcEEEccCcccccC-cchhhhcccCCc
Q 042610 232 MTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNN--ILSGHIPSWMGNFSHLHTLSMSNNHLEGN-IPVQCQNLAGLY 308 (351)
Q Consensus 232 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 308 (351)
...|+.+++.+..++... .+..+++|+.|.+++| .+.+.++.....+++|+++.+++|++... --..++.+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 345556666665554432 3456778888888888 55555555556668888888888888731 112245677788
Q ss_pred eeecCCCcccccc---cccc-ccCcccEEE
Q 042610 309 IPDISENNLSGSM---ISTL-NLSSVACLY 334 (351)
Q Consensus 309 ~L~l~~n~~~~~~---~~~~-~~~~L~~l~ 334 (351)
.|++.+|..+..- -..| -+++|+.++
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 8888888766521 1222 466676665
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.44 E-value=0.0056 Score=56.66 Aligned_cols=136 Identities=22% Similarity=0.087 Sum_probs=77.1
Q ss_pred hhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccc-cccccc----cccccCCCCccEEEccCCc
Q 042610 194 MDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHND-NFSRKI----KDGLLRSTELEDLDISNNI 268 (351)
Q Consensus 194 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~ 268 (351)
+...++.|+.+.+.++...... .+......++.|++|++.++ ...... ......+..|+.++++.+.
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~--------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDD--------SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred HHhhCchhhHhhhcccccCChh--------hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3334678888888777432110 02344556778888888763 221111 1223345678888888776
Q ss_pred -ccccCCCCcc-CCCCCcEEEccCcc-cccC-cchhhhcccCCceeecCCCccc-cccccc-c-ccCcccEEEccC
Q 042610 269 -LSGHIPSWMG-NFSHLHTLSMSNNH-LEGN-IPVQCQNLAGLYIPDISENNLS-GSMIST-L-NLSSVACLYLQN 337 (351)
Q Consensus 269 -~~~~~~~~~~-~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~n~~~-~~~~~~-~-~~~~L~~l~l~~ 337 (351)
+++.....+. .+++|++|.+.+|. +++. +......++.|++|++++|... +..... . +++.++++.+..
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 5543333333 37788888877776 4544 3333456788888888887543 211111 2 666666655443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0081 Score=29.02 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=8.6
Q ss_pred CcEEEccCcccccCcchhh
Q 042610 283 LHTLSMSNNHLEGNIPVQC 301 (351)
Q Consensus 283 L~~L~l~~~~~~~~~~~~~ 301 (351)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 444333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0096 Score=28.76 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=8.6
Q ss_pred ccEEEccCccccccCCccc
Q 042610 7 LFELNFGGNKFEGHLPQCL 25 (351)
Q Consensus 7 L~~L~l~~~~~~~~~~~~l 25 (351)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555554 344333
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.015 Score=45.74 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=42.5
Q ss_pred cceeeeccccccccccccccCCCCccEEEccCCcccc-cCCCCc-cCCCCCcEEEccCcc-cccCcchhhhcccCCceee
Q 042610 235 LWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSG-HIPSWM-GNFSHLHTLSMSNNH-LEGNIPVQCQNLAGLYIPD 311 (351)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 311 (351)
++.++.+++.+..+..+.+..+..++.|.+.+|..-+ .-..-+ +..++|+.|++++|. |++.....+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4444555444444444445555566666666554321 000011 134667777777663 4544555566667777776
Q ss_pred cCCC
Q 042610 312 ISEN 315 (351)
Q Consensus 312 l~~n 315 (351)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6654
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.81 E-value=0.07 Score=23.83 Aligned_cols=9 Identities=44% Similarity=0.420 Sum_probs=3.0
Q ss_pred cEEEccCcc
Q 042610 331 ACLYLQNNA 339 (351)
Q Consensus 331 ~~l~l~~n~ 339 (351)
++|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.46 E-value=0.00093 Score=60.97 Aligned_cols=189 Identities=21% Similarity=0.167 Sum_probs=92.7
Q ss_pred CceEEEccCcccCCCcChhh---hhcCccceEEEecCCccccccccc------cc-cCCcEEEeeCCcccccc----Cch
Q 042610 128 NLKYLDLSHNKLAGNFPTWL---LENNTKLELLYLVNNSFSGFQLTS------AQ-HGLLSLDISSNSFTGEL----PQN 193 (351)
Q Consensus 128 ~L~~l~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~------~~-~~L~~L~l~~~~~~~~~----~~~ 193 (351)
.+..+.+.+|.+.......+ +...+.|+.|++++|.+....... .. +.+++|++..|.+.+.. ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788888888764433322 455778888999999887432111 22 55677777777665433 233
Q ss_pred hhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccc----ccccCCCC-ccEEEccCCc
Q 042610 194 MDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIK----DGLLRSTE-LEDLDISNNI 268 (351)
Q Consensus 194 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~L~l~~~~ 268 (351)
+. ....++.++++.|.+....-.. ....+...+....+++.|++.+|.++.... ..+...+. +.++++..|.
T Consensus 168 L~-~~~~l~~l~l~~n~l~~~g~~~--l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 168 LE-KNEHLTELDLSLNGLIELGLLV--LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred Hh-cccchhHHHHHhcccchhhhHH--HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 33 3567777788777664110000 000111112234556666666665543221 11122222 4445555554
Q ss_pred cccc----CCCCccCC-CCCcEEEccCcccccC----cchhhhcccCCceeecCCCcccc
Q 042610 269 LSGH----IPSWMGNF-SHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDISENNLSG 319 (351)
Q Consensus 269 ~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~ 319 (351)
+.+. ....+..+ +.+++++++.|.+++. +...+..++.++.+.+..|.+.+
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4321 11122222 3445555555555433 22223344455555555555443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=0.038 Score=43.58 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=37.1
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCc-hhhc-cCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 8 FELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILP-SVIA-NLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 8 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
+.++-+++.+.+...+.+.+++.++.|.+.+|.--+... ..+. -.++|+.|++++|.-.. ......+..+++|+.+.
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHHHH
Confidence 445555555554444555556666666666654321111 1111 24566666666654221 22233344444444444
Q ss_pred ccc
Q 042610 86 LSM 88 (351)
Q Consensus 86 l~~ 88 (351)
+..
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.91 E-value=0.059 Score=26.53 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=6.8
Q ss_pred CCCcEEEccCcccccC
Q 042610 281 SHLHTLSMSNNHLEGN 296 (351)
Q Consensus 281 ~~L~~L~l~~~~~~~~ 296 (351)
++|++|+|++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555554433
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.03 E-value=0.003 Score=57.72 Aligned_cols=184 Identities=22% Similarity=0.182 Sum_probs=114.7
Q ss_pred ceEEEecCCcccccccc------ccccCCcEEEeeCCccccccCchhhhcC----CCceEEEeecCccccCCCCCccccc
Q 042610 154 LELLYLVNNSFSGFQLT------SAQHGLLSLDISSNSFTGELPQNMDIVL----PKLVYMNVSKNSFEGNIPSSIGKMQ 223 (351)
Q Consensus 154 L~~L~l~~~~l~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~~~~~~ 223 (351)
+..+.+.+|.+...... .-.+.|+.|++++|.+.+..-..+...+ +.++.|.+..|.+.+. +..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~------g~~ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE------GAA 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc------chH
Confidence 67788888887765322 2456788888888887643333332222 3456677776766532 222
Q ss_pred cchhhhcCccccceeeecccccccc----cccccc----CCCCccEEEccCCcccccC----CCCccCCCC-CcEEEccC
Q 042610 224 GLLATYMNMTQLWALYLHNDNFSRK----IKDGLL----RSTELEDLDISNNILSGHI----PSWMGNFSH-LHTLSMSN 290 (351)
Q Consensus 224 ~l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~l~~ 290 (351)
.+...+.....++.++++.|.+... .+..+. ...++++|.+..|.++... ...+...++ +.++++..
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 2334444567788888888766432 122222 3567888888888765211 112334444 66788888
Q ss_pred cccccC----cchhhhcc-cCCceeecCCCcccccccccc-----ccCcccEEEccCcccccc
Q 042610 291 NHLEGN----IPVQCQNL-AGLYIPDISENNLSGSMISTL-----NLSSVACLYLQNNALGDR 343 (351)
Q Consensus 291 ~~~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~l~l~~n~~~~~ 343 (351)
|.+.+. +...+..+ ..++++++..|.++....... .++.++++.+.+|++.+.
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 887744 23334445 677999999999876544333 788899999999988653
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.15 E-value=0.3 Score=24.52 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=13.1
Q ss_pred CcccEEEccCccccccccccC
Q 042610 328 SSVACLYLQNNALGDRFVKLN 348 (351)
Q Consensus 328 ~~L~~l~l~~n~~~~~~p~~~ 348 (351)
++|++|++++|+++ .+|++.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL~ 21 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPELX 21 (26)
T ss_pred cccceeecCCCccc-cCcccc
Confidence 45677777777766 566643
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.00 E-value=0.28 Score=24.54 Aligned_cols=18 Identities=33% Similarity=0.233 Sum_probs=8.7
Q ss_pred cCCceeecCCCccccccc
Q 042610 305 AGLYIPDISENNLSGSMI 322 (351)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~ 322 (351)
++|+.|++++|.+...++
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555544433
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.00 E-value=0.28 Score=24.54 Aligned_cols=18 Identities=33% Similarity=0.233 Sum_probs=8.7
Q ss_pred cCCceeecCCCccccccc
Q 042610 305 AGLYIPDISENNLSGSMI 322 (351)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~ 322 (351)
++|+.|++++|.+...++
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555544433
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.75 E-value=0.04 Score=44.50 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=27.5
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcc
Q 042610 256 STELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNL 317 (351)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 317 (351)
++.++.++++.+.+. ..|..+++...+..++...|... -.|.++...++++.+++.++.+
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 344444444444444 44444444444444444444333 4444444555555555544443
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.39 E-value=1.8 Score=22.14 Aligned_cols=14 Identities=50% Similarity=0.572 Sum_probs=8.4
Q ss_pred CcccEEEccCcccc
Q 042610 328 SSVACLYLQNNALG 341 (351)
Q Consensus 328 ~~L~~l~l~~n~~~ 341 (351)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=70.70 E-value=1.8 Score=21.55 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=5.1
Q ss_pred CCCcEEEccCC
Q 042610 29 THLKVLDVSSN 39 (351)
Q Consensus 29 ~~L~~L~l~~~ 39 (351)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.73 E-value=2.8 Score=38.65 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=46.1
Q ss_pred CCCCccEEEccCCccccc--CCCCccCCCCCcEEEccCc--ccccCcchhhh--cccCCceeecCCCcccccccc-----
Q 042610 255 RSTELEDLDISNNILSGH--IPSWMGNFSHLHTLSMSNN--HLEGNIPVQCQ--NLAGLYIPDISENNLSGSMIS----- 323 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~----- 323 (351)
+.+.+..+.+++|.+... +-..-...|+|..|+|++| .+.. ..++. +...|++|-+.+|.++.....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 456678888888876421 1112234688889999988 3331 12222 235688888888888653221
Q ss_pred -cc--ccCcccEEE
Q 042610 324 -TL--NLSSVACLY 334 (351)
Q Consensus 324 -~~--~~~~L~~l~ 334 (351)
.+ -+|.|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 11 366666654
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.57 E-value=3.8 Score=20.62 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=7.6
Q ss_pred cCCceeecCCCccc
Q 042610 305 AGLYIPDISENNLS 318 (351)
Q Consensus 305 ~~L~~L~l~~n~~~ 318 (351)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.33 E-value=4.9 Score=37.13 Aligned_cols=80 Identities=23% Similarity=0.232 Sum_probs=49.0
Q ss_pred cCCCceEEEccCcccCCCcCh--hhhhcCccceEEEecCC--ccccccccc--cccCCcEEEeeCCccccccCc------
Q 042610 125 LQFNLKYLDLSHNKLAGNFPT--WLLENNTKLELLYLVNN--SFSGFQLTS--AQHGLLSLDISSNSFTGELPQ------ 192 (351)
Q Consensus 125 ~~~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~--~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~------ 192 (351)
+.+.+..+++++|++. .+.. .+.+..|+|+.|+|++| .+....... ....|++|.+.||++......
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4557788888888775 3332 23455788888888888 444333332 455678888888887543321
Q ss_pred hhhhcCCCceEEE
Q 042610 193 NMDIVLPKLVYMN 205 (351)
Q Consensus 193 ~~~~~l~~L~~L~ 205 (351)
.+...+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 2223456666654
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=66.89 E-value=0.17 Score=41.05 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=27.1
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccc
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLE 294 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 294 (351)
++..++++.+.+ ...+..++....+..+++..|... ..|.+++..+++++++.-++.+.
T Consensus 66 ~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 66 RLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 444444443322 122333333334444444444444 55555555555555555555443
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.72 E-value=52 Score=30.23 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=38.5
Q ss_pred CCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccc-----cccccccCCcEEEeeCCccccccCchhh
Q 042610 127 FNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGF-----QLTSAQHGLLSLDISSNSFTGELPQNMD 195 (351)
Q Consensus 127 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 195 (351)
+.+++++++.+.+...+|..+.+. .--+.+..|.+++- .....-..+..++++.+...+++|..+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p---~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQP---GNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred chhhhhccCCCcccccCCccccCC---CCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHH
Confidence 467888888888776666544221 11145555554432 2222334567788888877777776554
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.46 E-value=68 Score=36.46 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=22.6
Q ss_pred EccCccccccCCccccCCCCCcEEEccCCcCC
Q 042610 11 NFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLS 42 (351)
Q Consensus 11 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 42 (351)
+|++|.+....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777777555556777788888888877654
Done!