Query 042610
Match_columns 351
No_of_seqs 146 out of 2300
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 13:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-38 1.3E-42 304.2 27.5 338 5-347 294-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.9E-38 9.8E-43 304.9 26.5 339 3-346 198-556 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 3.9E-36 1.3E-40 273.9 22.7 330 5-347 30-414 (455)
4 3t6q_A CD180 antigen; protein- 100.0 1.3E-34 4.3E-39 273.2 29.1 219 123-343 274-515 (606)
5 4eco_A Uncharacterized protein 100.0 1.7E-35 5.7E-40 279.6 22.2 318 21-346 198-583 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 7.4E-35 2.5E-39 274.8 26.0 168 172-341 348-534 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.9E-34 1E-38 270.7 28.1 342 1-345 77-540 (606)
8 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-34 1.1E-38 267.3 26.2 338 1-345 46-514 (549)
9 2z63_A TOLL-like receptor 4, v 100.0 3.1E-34 1.1E-38 268.7 24.8 236 105-347 283-537 (570)
10 4eco_A Uncharacterized protein 100.0 3.8E-34 1.3E-38 270.3 23.2 326 3-341 247-600 (636)
11 3vq2_A TLR4, TOLL-like recepto 100.0 7.9E-34 2.7E-38 267.7 23.3 118 228-345 394-514 (606)
12 4ecn_A Leucine-rich repeat pro 100.0 6.9E-34 2.4E-38 273.6 23.2 329 2-342 445-841 (876)
13 4ecn_A Leucine-rich repeat pro 100.0 2.3E-33 7.9E-38 270.0 24.8 318 3-339 489-862 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 1.9E-33 6.4E-38 263.4 23.4 195 149-345 279-511 (570)
15 2id5_A Lingo-1, leucine rich r 100.0 3.6E-33 1.2E-37 255.7 24.0 299 5-318 32-333 (477)
16 4fmz_A Internalin; leucine ric 100.0 1.7E-32 5.9E-37 241.0 27.1 305 3-341 42-346 (347)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-33 1.2E-37 258.6 22.8 145 197-344 322-484 (520)
18 3o6n_A APL1; leucine-rich repe 100.0 2.3E-32 8E-37 243.9 23.5 310 3-342 43-353 (390)
19 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-32 2E-36 258.4 27.0 312 5-320 25-445 (680)
20 3v47_A TOLL-like receptor 5B a 100.0 1.5E-32 5.2E-37 250.2 21.9 310 1-322 50-412 (455)
21 1o6v_A Internalin A; bacterial 100.0 7.2E-32 2.5E-36 246.2 26.0 307 2-342 65-389 (466)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-32 5E-37 256.6 21.6 145 197-344 351-513 (562)
23 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-31 4.4E-36 255.9 27.9 337 5-343 222-599 (680)
24 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-32 4.8E-37 267.8 20.7 89 256-345 450-543 (844)
25 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.7E-36 250.0 23.7 310 4-343 50-360 (597)
26 1o6v_A Internalin A; bacterial 100.0 9E-31 3.1E-35 238.9 25.5 305 4-345 45-370 (466)
27 4fmz_A Internalin; leucine ric 100.0 6.6E-31 2.3E-35 230.9 23.3 284 2-318 63-346 (347)
28 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-30 4.5E-35 241.3 25.2 144 8-164 3-150 (520)
29 2z81_A CD282 antigen, TOLL-lik 100.0 1E-31 3.4E-36 250.5 17.8 181 5-188 26-210 (549)
30 3j0a_A TOLL-like receptor 5; m 100.0 9.1E-31 3.1E-35 255.1 24.7 302 4-318 23-375 (844)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1E-30 3.5E-35 237.0 21.9 285 3-319 40-353 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 1.8E-30 6.1E-35 237.9 23.0 281 1-296 52-335 (477)
33 1xku_A Decorin; proteoglycan, 100.0 1.6E-29 5.4E-34 220.5 25.6 286 6-339 32-330 (330)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-29 6.6E-34 235.5 26.7 323 4-341 30-486 (562)
35 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-29 8.1E-34 238.4 26.8 332 6-341 53-580 (635)
36 2ft3_A Biglycan; proteoglycan, 100.0 7.2E-30 2.5E-34 222.8 20.9 285 30-339 34-331 (332)
37 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-29 4.8E-34 229.6 22.2 308 2-346 61-392 (457)
38 1ogq_A PGIP-2, polygalacturona 100.0 5.1E-30 1.8E-34 221.6 17.8 251 29-342 50-306 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 2.2E-29 7.6E-34 224.6 20.0 289 27-342 43-332 (390)
40 1xku_A Decorin; proteoglycan, 100.0 1.5E-27 5.3E-32 207.9 25.3 270 4-316 51-330 (330)
41 3oja_B Anopheles plasmodium-re 100.0 2E-28 6.8E-33 230.0 20.1 290 27-343 49-339 (597)
42 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-27 9.1E-32 224.3 26.4 148 172-319 418-581 (635)
43 2ft3_A Biglycan; proteoglycan, 100.0 7.7E-28 2.6E-32 210.0 20.2 288 6-316 34-331 (332)
44 1jl5_A Outer protein YOPM; leu 100.0 4.9E-28 1.7E-32 219.3 18.5 244 79-345 131-415 (454)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-30 4.5E-35 237.8 -0.1 333 4-343 27-413 (461)
46 1jl5_A Outer protein YOPM; leu 100.0 6.6E-28 2.3E-32 218.4 16.0 310 5-345 11-376 (454)
47 2z80_A TOLL-like receptor 2, v 100.0 2.9E-27 1E-31 208.0 18.3 277 28-346 30-319 (353)
48 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-27 1.3E-31 203.7 18.4 231 104-347 50-287 (313)
49 4fcg_A Uncharacterized protein 99.9 3.6E-26 1.2E-30 198.7 21.3 235 28-318 80-314 (328)
50 1z7x_W Ribonuclease inhibitor; 99.9 5E-29 1.7E-33 227.3 0.7 330 4-342 2-384 (461)
51 2z66_A Variable lymphocyte rec 99.9 2E-26 6.8E-31 198.8 16.1 248 8-295 10-262 (306)
52 2z80_A TOLL-like receptor 2, v 99.9 5.3E-26 1.8E-30 200.0 16.9 203 4-213 30-236 (353)
53 4fcg_A Uncharacterized protein 99.9 2.2E-25 7.6E-30 193.6 20.4 224 104-341 81-314 (328)
54 2z66_A Variable lymphocyte rec 99.9 4.8E-25 1.6E-29 190.1 20.9 226 105-343 29-263 (306)
55 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-24 5.6E-29 202.2 25.5 262 6-323 41-302 (622)
56 3zyi_A Leucine-rich repeat-con 99.9 6.3E-25 2.1E-29 199.5 21.3 200 105-317 100-302 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 8.8E-25 3E-29 197.9 21.4 200 105-317 89-291 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 7.6E-25 2.6E-29 186.9 16.2 224 8-295 14-239 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-24 8.3E-29 183.7 19.3 220 108-341 15-238 (285)
60 3ogk_B Coronatine-insensitive 99.9 1.4E-26 4.8E-31 217.7 5.3 328 3-343 162-528 (592)
61 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-26 1.6E-30 197.2 7.7 265 7-322 12-280 (317)
62 3zyi_A Leucine-rich repeat-con 99.9 2.5E-24 8.6E-29 195.6 19.3 246 7-293 56-302 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 3.6E-24 1.2E-28 193.9 19.6 246 7-293 45-291 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-25 2.1E-29 190.2 8.8 195 3-212 32-227 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-22 3.6E-27 190.0 23.7 248 5-305 61-308 (622)
66 3oja_A Leucine-rich immune mol 99.9 4.1E-24 1.4E-28 195.4 11.6 236 27-313 32-270 (487)
67 1wwl_A Monocyte differentiatio 99.9 1.1E-24 3.7E-29 188.3 5.8 258 25-319 39-310 (312)
68 1wwl_A Monocyte differentiatio 99.9 9.5E-25 3.3E-29 188.6 5.4 206 125-343 93-311 (312)
69 3rfs_A Internalin B, repeat mo 99.9 6.3E-23 2.1E-27 173.6 14.9 200 127-346 41-240 (272)
70 3oja_A Leucine-rich immune mol 99.9 7.4E-23 2.5E-27 187.1 16.2 221 102-345 32-255 (487)
71 3ogk_B Coronatine-insensitive 99.9 6.1E-24 2.1E-28 199.7 8.3 326 3-337 190-547 (592)
72 2o6q_A Variable lymphocyte rec 99.9 5.8E-22 2E-26 167.6 19.1 200 105-318 17-218 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.5E-27 171.1 15.9 205 128-345 29-241 (276)
74 1p9a_G Platelet glycoprotein I 99.9 7.9E-22 2.7E-26 168.2 18.4 203 100-318 6-208 (290)
75 2p1m_B Transport inhibitor res 99.9 1.4E-24 4.7E-29 204.2 1.2 337 3-342 103-520 (594)
76 2p1m_B Transport inhibitor res 99.9 4.5E-24 1.6E-28 200.7 1.9 336 3-343 64-496 (594)
77 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.5E-26 164.5 14.9 205 128-348 20-225 (272)
78 2ca6_A RAN GTPase-activating p 99.9 2.8E-23 9.5E-28 184.9 3.6 268 20-321 23-319 (386)
79 2z62_A TOLL-like receptor 4, v 99.9 3.3E-21 1.1E-25 163.5 15.2 202 6-247 29-238 (276)
80 1p9a_G Platelet glycoprotein I 99.9 1.4E-20 4.8E-25 160.4 18.1 133 2-167 7-139 (290)
81 2o6q_A Variable lymphocyte rec 99.9 3.4E-20 1.1E-24 156.7 19.3 202 30-295 17-219 (270)
82 3goz_A Leucine-rich repeat-con 99.9 3.6E-22 1.2E-26 176.1 7.4 265 9-322 2-301 (362)
83 2ca6_A RAN GTPase-activating p 99.9 2.2E-22 7.5E-27 179.1 5.2 237 103-345 31-320 (386)
84 1h6u_A Internalin H; cell adhe 99.9 2.3E-20 7.8E-25 160.7 17.0 197 101-322 38-234 (308)
85 2xwt_C Thyrotropin receptor; s 99.8 7.1E-20 2.4E-24 151.9 16.4 203 116-339 23-237 (239)
86 4glp_A Monocyte differentiatio 99.8 1.6E-20 5.5E-25 161.9 12.9 226 105-343 65-309 (310)
87 3m19_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 151.6 17.0 177 128-319 15-193 (251)
88 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.6E-24 156.5 16.1 192 4-247 40-231 (308)
89 2ast_B S-phase kinase-associat 99.8 1E-20 3.4E-25 165.2 9.2 251 30-325 48-313 (336)
90 3goz_A Leucine-rich repeat-con 99.8 1.9E-20 6.4E-25 165.1 8.0 187 4-213 21-239 (362)
91 3m19_A Variable lymphocyte rec 99.8 4.8E-19 1.6E-23 147.9 15.9 178 105-296 15-194 (251)
92 2ast_B S-phase kinase-associat 99.8 3.2E-20 1.1E-24 162.0 8.5 230 105-346 71-311 (336)
93 4glp_A Monocyte differentiatio 99.8 7E-20 2.4E-24 157.9 10.1 224 6-247 65-308 (310)
94 2xwt_C Thyrotropin receptor; s 99.8 6.6E-19 2.3E-23 146.0 14.5 193 105-315 32-236 (239)
95 4ay9_X Follicle-stimulating ho 99.8 4.6E-18 1.6E-22 149.0 16.2 201 8-212 12-215 (350)
96 2o6s_A Variable lymphocyte rec 99.8 1.9E-18 6.5E-23 140.1 12.7 154 175-345 29-182 (208)
97 2o6s_A Variable lymphocyte rec 99.8 7.5E-18 2.6E-22 136.5 13.3 171 108-323 11-183 (208)
98 3cvr_A Invasion plasmid antige 99.7 2.3E-17 7.9E-22 152.3 16.3 184 105-325 60-250 (571)
99 1h6t_A Internalin B; cell adhe 99.7 1.7E-17 5.9E-22 141.4 13.9 188 110-322 30-217 (291)
100 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 6.7E-22 135.1 13.6 155 154-319 13-167 (220)
101 4ay9_X Follicle-stimulating ho 99.7 5.7E-17 1.9E-21 142.1 16.6 221 104-339 30-257 (350)
102 4ezg_A Putative uncharacterize 99.7 4E-17 1.4E-21 131.0 13.4 153 172-342 42-195 (197)
103 1h6t_A Internalin B; cell adhe 99.7 4.8E-17 1.7E-21 138.6 14.5 170 4-213 45-214 (291)
104 3cvr_A Invasion plasmid antige 99.7 2.8E-17 9.5E-22 151.7 13.9 168 105-306 81-255 (571)
105 3e6j_A Variable lymphocyte rec 99.7 7.9E-17 2.7E-21 132.4 15.1 107 234-341 65-172 (229)
106 2v9t_B SLIT homolog 2 protein 99.7 5.8E-17 2E-21 132.3 13.9 152 155-318 14-165 (220)
107 1m9s_A Internalin B; cell inva 99.7 6E-17 2E-21 151.1 13.8 174 100-296 39-212 (605)
108 2xot_A Amphoterin-induced prot 99.7 5.5E-17 1.9E-21 142.7 12.8 173 130-317 21-201 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-16 6.8E-21 129.1 14.0 153 129-296 13-168 (220)
110 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.7E-21 127.8 12.3 151 152-319 44-195 (197)
111 1m9s_A Internalin B; cell inva 99.7 2.9E-16 9.9E-21 146.4 14.8 172 75-270 39-210 (605)
112 2v9t_B SLIT homolog 2 protein 99.7 3.5E-16 1.2E-20 127.6 13.6 151 130-295 14-166 (220)
113 3sb4_A Hypothetical leucine ri 99.7 1.7E-16 6E-21 137.8 10.0 284 27-335 23-328 (329)
114 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.7E-21 133.8 8.6 151 123-296 37-187 (263)
115 2xot_A Amphoterin-induced prot 99.7 4.6E-16 1.6E-20 136.8 12.4 174 107-294 21-202 (361)
116 1xeu_A Internalin C; cellular 99.7 2.7E-16 9.3E-21 131.9 9.7 172 126-322 18-189 (263)
117 1dce_A Protein (RAB geranylger 99.6 9.9E-18 3.4E-22 155.4 -0.6 203 101-335 346-567 (567)
118 3e6j_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 122.4 14.5 151 129-319 21-173 (229)
119 1dce_A Protein (RAB geranylger 99.6 5.3E-18 1.8E-22 157.1 -3.6 183 26-214 346-548 (567)
120 3sb4_A Hypothetical leucine ri 99.6 1.9E-15 6.7E-20 131.2 10.6 287 4-312 24-328 (329)
121 1w8a_A SLIT protein; signaling 99.6 5.1E-15 1.7E-19 118.1 12.2 132 176-320 10-141 (192)
122 2ell_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 115.7 9.8 132 198-341 23-160 (168)
123 4fs7_A Uncharacterized protein 99.6 6.8E-14 2.3E-18 124.5 18.2 290 22-337 64-375 (394)
124 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.1E-19 113.4 11.5 132 5-166 24-161 (168)
125 2o6r_A Variable lymphocyte rec 99.6 2.5E-14 8.6E-19 112.6 12.4 130 176-319 9-138 (177)
126 2je0_A Acidic leucine-rich nuc 99.6 5.9E-15 2E-19 112.7 7.1 101 234-336 43-148 (149)
127 1w8a_A SLIT protein; signaling 99.6 4E-14 1.4E-18 112.9 12.0 134 154-298 10-143 (192)
128 2wfh_A SLIT homolog 2 protein 99.5 5.6E-14 1.9E-18 112.0 12.5 127 177-318 13-139 (193)
129 4fdw_A Leucine rich hypothetic 99.5 6.3E-13 2.1E-17 118.0 20.1 267 27-338 111-380 (401)
130 2je0_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 108.1 9.5 127 4-160 16-148 (149)
131 4b8c_D Glucose-repressible alc 99.5 7.3E-15 2.5E-19 140.3 6.1 136 172-322 222-358 (727)
132 4b8c_D Glucose-repressible alc 99.5 5.2E-15 1.8E-19 141.3 4.2 141 192-346 217-359 (727)
133 2wfh_A SLIT homolog 2 protein 99.5 2.6E-13 8.9E-18 108.1 12.1 128 154-294 12-139 (193)
134 2o6r_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 105.6 12.3 131 154-296 9-139 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-13 8.1E-18 106.8 9.1 131 25-187 15-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.4 2.8E-13 9.7E-18 106.3 8.8 104 234-340 43-152 (176)
137 4fdw_A Leucine rich hypothetic 99.4 7.7E-12 2.6E-16 111.0 17.4 225 94-341 126-358 (401)
138 4fs7_A Uncharacterized protein 99.4 1.3E-11 4.4E-16 109.8 18.2 270 40-338 58-353 (394)
139 3g39_A Variable lymphocyte rec 99.4 3.5E-12 1.2E-16 99.4 11.2 86 234-319 31-116 (170)
140 1ds9_A Outer arm dynein; leuci 99.4 3.1E-14 1.1E-18 114.2 -1.5 103 105-212 71-185 (198)
141 3un9_A NLR family member X1; l 99.3 1.2E-13 4E-18 121.5 0.7 112 232-343 154-285 (372)
142 2r9u_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 96.4 11.2 106 202-320 15-120 (174)
143 1ds9_A Outer arm dynein; leuci 99.3 8.3E-14 2.8E-18 111.6 -1.4 88 122-212 65-153 (198)
144 4gt6_A Cell surface protein; l 99.3 4.1E-10 1.4E-14 100.0 21.3 296 21-339 55-389 (394)
145 3un9_A NLR family member X1; l 99.3 2.6E-13 8.9E-18 119.3 -0.9 136 199-343 101-254 (372)
146 3g39_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 93.6 11.1 107 175-295 10-116 (170)
147 4gt6_A Cell surface protein; l 99.3 3E-09 1E-13 94.5 24.8 284 41-339 51-368 (394)
148 2r9u_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 92.5 11.3 106 176-295 14-119 (174)
149 2ifg_A High affinity nerve gro 99.0 6.6E-10 2.3E-14 97.0 9.9 88 253-340 27-115 (347)
150 2ra8_A Uncharacterized protein 99.0 1.3E-09 4.6E-14 94.9 9.2 83 255-339 250-341 (362)
151 4h09_A Hypothetical leucine ri 99.0 6.5E-08 2.2E-12 85.4 19.6 128 24-162 41-168 (379)
152 2ifg_A High affinity nerve gro 98.9 3.9E-09 1.3E-13 92.1 9.3 104 177-294 11-116 (347)
153 4h09_A Hypothetical leucine ri 98.8 8.8E-07 3E-11 78.0 22.2 297 5-328 46-356 (379)
154 2ra8_A Uncharacterized protein 98.8 9.4E-09 3.2E-13 89.6 6.8 135 196-343 169-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 4.6E-09 1.6E-13 82.7 1.7 87 255-341 63-164 (185)
156 3e4g_A ATP synthase subunit S, 98.5 3.3E-08 1.1E-12 76.0 3.0 82 234-315 62-149 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 2.3E-08 7.7E-13 78.7 2.1 118 197-320 34-166 (185)
158 3e4g_A ATP synthase subunit S, 98.5 7.2E-08 2.5E-12 74.1 3.1 87 29-116 61-151 (176)
159 3rw6_A Nuclear RNA export fact 98.2 8.2E-07 2.8E-11 73.5 3.3 117 88-205 125-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 8.1E-06 2.8E-10 67.5 6.5 78 255-334 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 3.2E-05 1.1E-09 60.5 2.3 86 255-340 68-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 4.8E-05 1.7E-09 59.5 2.4 115 198-318 40-170 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0052 1.8E-07 44.6 5.6 56 108-166 12-69 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.013 4.5E-07 42.5 6.5 56 237-294 12-68 (130)
165 2lz0_A Uncharacterized protein 72.5 5.2 0.00018 27.0 4.3 48 15-63 6-53 (100)
166 2lz0_A Uncharacterized protein 68.8 7.1 0.00024 26.3 4.3 39 251-290 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-38 Score=304.15 Aligned_cols=338 Identities=31% Similarity=0.417 Sum_probs=219.5
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchh-hccCCCCCeEEeecccccCCCcchhhhcccc-ccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSV-IANLTSLEYLALYDNRFKGRLFSFYSLANLS-KFE 82 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~ 82 (351)
++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+... ..+.+++ +|+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~~L~ 371 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLSASLL 371 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC--TTHHHHTTTCS
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc--HHHHhhhcCCc
Confidence 44444444444444444444444444444444444444333322 4444444444444444431111 1122222 444
Q ss_pred ccccccccccceeeecCcC--CccceeEEEcCCCCCC-cCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEe
Q 042610 83 AFQLSMETDLLQVEIENCL--PTFQLKVLSLPNCNLG-AIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYL 159 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 159 (351)
.+++..+....... ..+. .+..|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++
T Consensus 372 ~L~Ls~N~l~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L 449 (768)
T 3rgz_A 372 TLDLSSNNFSGPIL-PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKL 449 (768)
T ss_dssp EEECCSSEEEEECC-TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEEC
T ss_pred EEEccCCCcCCCcC-hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEEC
Confidence 44444333211111 1111 1456677777777663 56666777777777777777776555554 356677777777
Q ss_pred cCCccccccc--cccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccch-----------
Q 042610 160 VNNSFSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL----------- 226 (351)
Q Consensus 160 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~----------- 226 (351)
++|.+....+ ...+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|.+++.++++.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 7776664322 22556677777777766655665554 566777777777776666666665555443
Q ss_pred ---hhhcCccccceeeecccccccccccc---------------------------------------------------
Q 042610 227 ---ATYMNMTQLWALYLHNDNFSRKIKDG--------------------------------------------------- 252 (351)
Q Consensus 227 ---~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------------------------------- 252 (351)
..+..+++|+.|++++|.+.+.+|..
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 34566778888998888776544432
Q ss_pred -------------------ccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecC
Q 042610 253 -------------------LLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 253 -------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (351)
+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.++.|+.|+++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 3345678999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccc-ccCcccEEEccCcccccccccc
Q 042610 314 ENNLSGSMISTL-NLSSVACLYLQNNALGDRFVKL 347 (351)
Q Consensus 314 ~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~~ 347 (351)
+|++++.+|..+ .+++|++|++++|+++|.+|..
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999888 8999999999999999999964
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-38 Score=304.88 Aligned_cols=339 Identities=29% Similarity=0.369 Sum_probs=249.3
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
++++|++|++++|.+.+.+|. ++++++|++|++++|.+++..|..+.++++|++|++++|.+.+.... ..+++|+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~ 272 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQ 272 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----CCCTTCC
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----cccCCCC
Confidence 566677777777766655555 67777777777777777766677777777777777777766542221 1566677
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCC-cCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecC
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLG-AIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (351)
.+++..+......+......+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+.+|...+..+++|+.|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 77776665433333322333478888888888874 56777888888888888888887677776667788888888888
Q ss_pred Ccccccccc--cccc-CCcEEEeeCCccccccCchhhh-cCCCceEEEeecCccccCCCCCccccccch-----------
Q 042610 162 NSFSGFQLT--SAQH-GLLSLDISSNSFTGELPQNMDI-VLPKLVYMNVSKNSFEGNIPSSIGKMQGLL----------- 226 (351)
Q Consensus 162 ~~l~~~~~~--~~~~-~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~----------- 226 (351)
|.+....+. ..++ +|+.|++++|.+.+.++..+.. .+++|+.|++++|.+.+.+|..+..++++.
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 877632221 2333 6666666666666555554431 145666666666666655665555554433
Q ss_pred ---hhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhc
Q 042610 227 ---ATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQN 303 (351)
Q Consensus 227 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 303 (351)
..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|.+++..|..++.+++|++|++++|++.+.+|..+..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 34556778999999999998888888889999999999999999888999999999999999999999999999999
Q ss_pred ccCCceeecCCCcccccccccc-ccCcccEEEccCccccccccc
Q 042610 304 LAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~ 346 (351)
+++|++|++++|.+.+..+..+ .+++|++|++++|+++|.+|.
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 9999999999999998888777 899999999999999999884
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-36 Score=273.94 Aligned_cols=330 Identities=20% Similarity=0.207 Sum_probs=261.5
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCC-CchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGI-LPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
+++++|++++|.+.+..|..++++++|++|++++|.+.+. .+.+|.++++|++|++++|.+.. .....+..+++|+.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ--LETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE--ECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc--cChhhccCcccCCE
Confidence 5799999999999977788999999999999999988644 45678999999999999998864 22346778899999
Q ss_pred cccccccccce-eeecCcCCccceeEEEcCCCCCCcC-Cch-hhcCCCceEEEccCcccCCCcChhhhhcC--ccceEEE
Q 042610 84 FQLSMETDLLQ-VEIENCLPTFQLKVLSLPNCNLGAI-PNF-LLLQFNLKYLDLSHNKLAGNFPTWLLENN--TKLELLY 158 (351)
Q Consensus 84 l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~ 158 (351)
+++.++..... .....+..+.+|++|++++|.+..+ |.. +..+++|+.|++++|.+.+..+..+ ..+ .+++.++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL-LNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS-GGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh-hccccccccccc
Confidence 99998865432 2223477888999999999999766 544 7889999999999999885555433 333 5777888
Q ss_pred ecCCccccccccc----------cccCCcEEEeeCCccccccCchhhh--------------------------------
Q 042610 159 LVNNSFSGFQLTS----------AQHGLLSLDISSNSFTGELPQNMDI-------------------------------- 196 (351)
Q Consensus 159 l~~~~l~~~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------------- 196 (351)
+++|.+....... ..++|++|++++|.+.+..+..+..
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 8887776654321 3356777888777766444433321
Q ss_pred ------cCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCccc
Q 042610 197 ------VLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILS 270 (351)
Q Consensus 197 ------~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (351)
..++|+.+++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSV----------FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTT----------TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccccccCceEEEecCccccccchhh----------cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 1245666666666666544443 345668999999999999888888899999999999999998
Q ss_pred ccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcccccccccc
Q 042610 271 GHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFVKL 347 (351)
Q Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~~ 347 (351)
+..+..++.+++|++|++++|.+.+..|..+..+++|++|++++|++++.++..+ .+++|++|++++|++++..|.+
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 7778888999999999999999998888899999999999999999998877777 8999999999999999988854
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-34 Score=273.20 Aligned_cols=219 Identities=22% Similarity=0.202 Sum_probs=90.9
Q ss_pred hhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEeeCCccccccCchhhhcCCC
Q 042610 123 LLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPK 200 (351)
Q Consensus 123 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 200 (351)
+..+++|+.+++++|.+. .+|..+ ..+++|+.|++++|.+..... ...+++|++|++++|.+.+.++...+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 334444445555444444 344332 344445555555444443321 1234444444444444433333332223444
Q ss_pred ceEEEeecCccccCC--CCCccccccch--------------hhhcCccccceeeeccccccccccc-cccCCCCccEEE
Q 042610 201 LVYMNVSKNSFEGNI--PSSIGKMQGLL--------------ATYMNMTQLWALYLHNDNFSRKIKD-GLLRSTELEDLD 263 (351)
Q Consensus 201 L~~L~l~~~~~~~~~--~~~~~~~~~l~--------------~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 263 (351)
|+.|++++|.+.+.. +..+..++++. ..+..+++|++|++++|.+.+..+. .+..+++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 444444444433221 22222222111 1223334444444444444433222 234444444444
Q ss_pred ccCCcccccCCCCccCCCCCcEEEccCcccccC---cchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcc
Q 042610 264 ISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGN---IPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNA 339 (351)
Q Consensus 264 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 339 (351)
+++|.+.+..+..++.+++|++|++++|.+.+. .+..+..+++|++|++++|.+++.++..+ .+++|++|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 444444434444444444444444444444431 11234444444444444444444444333 44444444444444
Q ss_pred cccc
Q 042610 340 LGDR 343 (351)
Q Consensus 340 ~~~~ 343 (351)
+++.
T Consensus 512 l~~~ 515 (606)
T 3t6q_A 512 LTSS 515 (606)
T ss_dssp CCGG
T ss_pred cCcC
Confidence 4443
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-35 Score=279.61 Aligned_cols=318 Identities=16% Similarity=0.169 Sum_probs=198.7
Q ss_pred CCccccCCCCCcEEEccCCcCCCC-----------------Cchhhc--cCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 21 LPQCLNNLTHLKVLDVSSNKLSGI-----------------LPSVIA--NLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 21 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
+|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+... ..+.++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh--HHHhcCCCC
Confidence 566677777777777777777753 666666 77777777777776654222 345667777
Q ss_pred ccccccccc-ccceeeecCcC------CccceeEEEcCCCCCCcCCc--hhhcCCCceEEEccCcccCCCcChhhhhcCc
Q 042610 82 EAFQLSMET-DLLQVEIENCL------PTFQLKVLSLPNCNLGAIPN--FLLLQFNLKYLDLSHNKLAGNFPTWLLENNT 152 (351)
Q Consensus 82 ~~l~l~~~~-~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 152 (351)
+.+++..+. .........+. .+++|+.|++++|.+..+|. .+..+++|+.|++++|.+.+.+| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCC
Confidence 777777665 22201111222 23677777777777777776 67777777777777777766666 245667
Q ss_pred cceEEEecCCccccccc-cccccC-CcEEEeeCCccccccCchhhh-cCCCceEEEeecCccccCCCCCcc-------cc
Q 042610 153 KLELLYLVNNSFSGFQL-TSAQHG-LLSLDISSNSFTGELPQNMDI-VLPKLVYMNVSKNSFEGNIPSSIG-------KM 222 (351)
Q Consensus 153 ~L~~L~l~~~~l~~~~~-~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~-------~~ 222 (351)
+|+.|++++|.+..++. ...+++ |+.|++++|.+. .+|..+.. .+++|+.|++++|.+.+..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 77777777777665432 235556 777777777766 66654431 123677777777766665555544 22
Q ss_pred ccch--------------hhhcCccccceeeeccccccccccccccCC-------CCccEEEccCCcccccCCCCcc--C
Q 042610 223 QGLL--------------ATYMNMTQLWALYLHNDNFSRKIKDGLLRS-------TELEDLDISNNILSGHIPSWMG--N 279 (351)
Q Consensus 223 ~~l~--------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~ 279 (351)
.++. ..+..+++|++|++++|.+.+.....+... ++|+.|++++|.++ .+|..+. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 2221 223346677777777777663222222222 26777777777777 5666665 6
Q ss_pred CCCCcEEEccCcccccCcchhhhcccCCceeecC------CCcccccccccc-ccCcccEEEccCccccccccc
Q 042610 280 FSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDIS------ENNLSGSMISTL-NLSSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 280 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~ 346 (351)
+++|++|++++|.+.+ +|..+..+++|+.|+++ +|.+.+..+..+ .+++|++|++++|++ +.+|.
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 7777777777777775 66667777777777773 455555556555 677777777777777 55654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.4e-35 Score=274.79 Aligned_cols=168 Identities=21% Similarity=0.163 Sum_probs=95.9
Q ss_pred cccCCcEEEeeCCccccc--cCchhhhcCCCceEEEeecCccccCCCCCccccccch---------------hhhcCccc
Q 042610 172 AQHGLLSLDISSNSFTGE--LPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL---------------ATYMNMTQ 234 (351)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~ 234 (351)
.+++|+.|++++|.+.+. ++..+. .+++|+.|++++|.+.+ +|..+..++++. ..+..+++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 445555555555555422 133322 45556666665555442 333333333222 13445566
Q ss_pred cceeeeccccccccccccccCCCCccEEEccCCcccc-cCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecC
Q 042610 235 LWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSG-HIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (351)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 6666666666666555566666666666666666664 245566666666666666666665556666666666666666
Q ss_pred CCcccccccccc-ccCcccEEEccCcccc
Q 042610 314 ENNLSGSMISTL-NLSSVACLYLQNNALG 341 (351)
Q Consensus 314 ~n~~~~~~~~~~-~~~~L~~l~l~~n~~~ 341 (351)
+|++++..+..+ .+++|++|++++|+++
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 666666555555 5666666666666655
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-34 Score=270.68 Aligned_cols=342 Identities=20% Similarity=0.138 Sum_probs=211.0
Q ss_pred CCCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcc---------
Q 042610 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFS--------- 71 (351)
Q Consensus 1 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------- 71 (351)
+.++++|++|++++|.+.+..|..++++++|++|++++|++++..+..+.++++|++|++++|.+.+....
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence 35677777777777777766676777777777777777777655555666666666666666655432111
Q ss_pred -------------hhhhccccccc--ccccccccccc-------------------------------------------
Q 042610 72 -------------FYSLANLSKFE--AFQLSMETDLL------------------------------------------- 93 (351)
Q Consensus 72 -------------~~~l~~l~~L~--~l~l~~~~~~~------------------------------------------- 93 (351)
...+..+++|+ .+++..+....
T Consensus 157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred EEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 11122333333 23332221100
Q ss_pred -------------------------------eeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCC
Q 042610 94 -------------------------------QVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGN 142 (351)
Q Consensus 94 -------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 142 (351)
......+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+. .
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~-~ 315 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE-N 315 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS-B
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcC-c
Confidence 01111256677899999999999889988888899999999999887 4
Q ss_pred cChhhhhcCccceEEEecCCcccc-ccc--cccccCCcEEEeeCCcccccc--CchhhhcCCCceEEEeecCccccCCCC
Q 042610 143 FPTWLLENNTKLELLYLVNNSFSG-FQL--TSAQHGLLSLDISSNSFTGEL--PQNMDIVLPKLVYMNVSKNSFEGNIPS 217 (351)
Q Consensus 143 ~~~~~~~~~~~L~~L~l~~~~l~~-~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~ 217 (351)
++...+..+++|+.|++++|.+.. ++. ...+++|+.|++++|.+.+.. +..+. .+++|+.|++++|.+.+..+.
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCSCEEECTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCCcCCcCCHH
Confidence 433345677788888887776652 211 235666777777776665322 33332 566666666666666555555
Q ss_pred Cccccccch---------------hhhcCccccceeeeccccccccccccccCCCCccEEEccCCccccc---CCCCccC
Q 042610 218 SIGKMQGLL---------------ATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGH---IPSWMGN 279 (351)
Q Consensus 218 ~~~~~~~l~---------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~ 279 (351)
.+..++++. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 554444333 1244566677777777776666666666666777777777766541 2234566
Q ss_pred CCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcccccccc
Q 042610 280 FSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFV 345 (351)
Q Consensus 280 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p 345 (351)
+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+ ++++| +|++++|++++..|
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 6666666666666666566666666666666666666666655555 56666 66666666655443
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-34 Score=267.27 Aligned_cols=338 Identities=18% Similarity=0.223 Sum_probs=226.3
Q ss_pred CCCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccc
Q 042610 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSK 80 (351)
Q Consensus 1 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 80 (351)
+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..|.++++|++|++++|.+.... ....+.++++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-VTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-SSCSCTTCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc-hhhhhhccCC
Confidence 356778888888888877666677788888888888888887777666888888888888888776421 1234667778
Q ss_pred ccccccccccccceeeecCcCCccceeEEEcCCCCCCc-CCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEe
Q 042610 81 FEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGA-IPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYL 159 (351)
Q Consensus 81 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 159 (351)
|+.+++..+..........+..+++|+.|++++|.+.. .|..+..+++|+.++++++.+. .++..++..+++|+.|++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEc
Confidence 88888877765555555667778888888888888744 5666766667777777666654 555554555667777777
Q ss_pred cCCccccccc-----cc---------------------------------------------------------------
Q 042610 160 VNNSFSGFQL-----TS--------------------------------------------------------------- 171 (351)
Q Consensus 160 ~~~~l~~~~~-----~~--------------------------------------------------------------- 171 (351)
++|.+..... ..
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 7666554210 00
Q ss_pred ------------------------cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCC---CCcccccc
Q 042610 172 ------------------------AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIP---SSIGKMQG 224 (351)
Q Consensus 172 ------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~ 224 (351)
....|+.|++++|.+. .+|..++..+++|+.|++++|.+.+..| ..++.+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 0123555555555554 5666665567888888888887765432 11222222
Q ss_pred ch----------------hhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCC------------
Q 042610 225 LL----------------ATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSW------------ 276 (351)
Q Consensus 225 l~----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------ 276 (351)
+. ..+..+++|++|++++|.+. .++..+..+++|+.|++++|.++ .++..
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSN 440 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCS
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCC
Confidence 21 23566777888888887776 45556666677777777777665 22211
Q ss_pred ------ccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcccccccc
Q 042610 277 ------MGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFV 345 (351)
Q Consensus 277 ------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p 345 (351)
...+++|++|++++|+++ .+|. ...+++|+.|++++|++++.++..+ .+++|++|++++|++.+..|
T Consensus 441 N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 441 NNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 125677788888888777 5554 3567888888888888888777666 78888888888888877766
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=268.68 Aligned_cols=236 Identities=19% Similarity=0.231 Sum_probs=154.7
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCC
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSN 184 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 184 (351)
+|+.|+++++.+..+|..+..+ +|+.+++++|.+. .+|. ..+++|+.|++.+|.+........+++|++|++++|
T Consensus 283 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 283 NVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp TCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 3444444444444444433333 4444444444443 3332 123444444444443333222234555556666555
Q ss_pred cccccc--CchhhhcCCCceEEEeecCccccCCCCCccccccch---------------hhhcCccccceeeeccccccc
Q 042610 185 SFTGEL--PQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL---------------ATYMNMTQLWALYLHNDNFSR 247 (351)
Q Consensus 185 ~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~L~~L~l~~~~~~~ 247 (351)
.+.+.. +..+. .+++|+.|++++|.+.+. +..+..++++. ..+..+++|++|++++|.+.+
T Consensus 358 ~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 358 GLSFKGCCSQSDF-GTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp CCBEEEEEEHHHH-TCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccCcccccccccc-ccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 554211 22222 455666666665554422 11133322222 235567889999999999888
Q ss_pred cccccccCCCCccEEEccCCccc-ccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-
Q 042610 248 KIKDGLLRSTELEDLDISNNILS-GHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL- 325 (351)
Q Consensus 248 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~- 325 (351)
..+..+..+++|+.|++++|.+. +.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+++.++..+
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 88888888999999999999987 4688889999999999999999998888899999999999999999998887777
Q ss_pred ccCcccEEEccCcccccccccc
Q 042610 326 NLSSVACLYLQNNALGDRFVKL 347 (351)
Q Consensus 326 ~~~~L~~l~l~~n~~~~~~p~~ 347 (351)
.+++|++|++++|++++..|..
T Consensus 516 ~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCTTCCEEECCSSCBCCCTTTT
T ss_pred cccCCcEEEecCCcccCCCcch
Confidence 8999999999999999887753
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-34 Score=270.32 Aligned_cols=326 Identities=19% Similarity=0.224 Sum_probs=274.1
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCc-CCC-CCchhhccC------CCCCeEEeecccccCCCcchhh
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNK-LSG-ILPSVIANL------TSLEYLALYDNRFKGRLFSFYS 74 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~ 74 (351)
++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+.++ ++|++|++++|.+.. ......
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhh
Confidence 79999999999999998999999999999999999998 887 788888776 999999999999874 222235
Q ss_pred hcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCC-ceEEEccCcccCCCcChhhhhc--C
Q 042610 75 LANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFN-LKYLDLSHNKLAGNFPTWLLEN--N 151 (351)
Q Consensus 75 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~--~ 151 (351)
+.++++|+.+++..+...+..+ .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+ .. +
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~-~~~~l 401 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF-DAKSV 401 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC-CTTCS
T ss_pred hccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh-hhccc
Confidence 7789999999999887654444 778888999999999999999999999999 999999999998 888754 33 3
Q ss_pred ccceEEEecCCcccccccc--c-------cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCcccc
Q 042610 152 TKLELLYLVNNSFSGFQLT--S-------AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKM 222 (351)
Q Consensus 152 ~~L~~L~l~~~~l~~~~~~--~-------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 222 (351)
++|+.|++++|.+....+. . ..++|+.|++++|.+. .+|..++..+++|+.|++++|.+. .+|......
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~ 479 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD 479 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc
Confidence 4899999999999764221 1 4568999999999999 899888877999999999999998 666543221
Q ss_pred ccchhhhcCccccceeeecccccccccccccc--CCCCccEEEccCCcccccCCCCccCCCCCcEEEc------cCcccc
Q 042610 223 QGLLATYMNMTQLWALYLHNDNFSRKIKDGLL--RSTELEDLDISNNILSGHIPSWMGNFSHLHTLSM------SNNHLE 294 (351)
Q Consensus 223 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l------~~~~~~ 294 (351)
. ...+..+++|+.|++++|.+. .++..+. .+++|+.|++++|.+++ +|..+..+++|++|++ ++|.+.
T Consensus 480 ~--~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 480 E--NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp T--TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred c--cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccc
Confidence 1 011334558999999999998 5666666 89999999999999995 8999999999999999 567788
Q ss_pred cCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCcccc
Q 042610 295 GNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALG 341 (351)
Q Consensus 295 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 341 (351)
+.+|..+..+++|++|++++|.+... |..+ .++|++|++++|++.
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~-~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDIRKV-NEKI-TPNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCCBC-CSCC-CTTCCEEECCSCTTC
T ss_pred ccChHHHhcCCCCCEEECCCCcCCcc-CHhH-hCcCCEEECcCCCCc
Confidence 89999999999999999999999554 4433 389999999999775
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.9e-34 Score=267.74 Aligned_cols=118 Identities=21% Similarity=0.230 Sum_probs=91.9
Q ss_pred hhcCccccceeeecccccccccc-ccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccC-cchhhhccc
Q 042610 228 TYMNMTQLWALYLHNDNFSRKIK-DGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGN-IPVQCQNLA 305 (351)
Q Consensus 228 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~ 305 (351)
.+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+. +|..++.++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 44556677777777777666655 4667778888888888888777777788888888888888888763 677788888
Q ss_pred CCceeecCCCcccccccccc-ccCcccEEEccCcccccccc
Q 042610 306 GLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFV 345 (351)
Q Consensus 306 ~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p 345 (351)
+|++|++++|.+++.++..+ .+++|++|++++|++++..|
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 88888888888888777766 78888888888888877655
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-34 Score=273.61 Aligned_cols=329 Identities=18% Similarity=0.179 Sum_probs=200.1
Q ss_pred CCCCCccEEEccCccccc-----------------cCCcccc--CCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeec
Q 042610 2 CELKNLFELNFGGNKFEG-----------------HLPQCLN--NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYD 62 (351)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 62 (351)
.++++|++|+|++|.+++ .+|..++ ++++|++|++++|++.+..|..+.++++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 467778888888888775 2777766 788888888888877777777788888888888887
Q ss_pred cc-ccC--CCcchhh----hcccccccccccccccccceeee-cCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEc
Q 042610 63 NR-FKG--RLFSFYS----LANLSKFEAFQLSMETDLLQVEI-ENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDL 134 (351)
Q Consensus 63 ~~-~~~--~~~~~~~----l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l 134 (351)
|. +.+ .+..+.. +..+++|+.+++..+... ..+. ..+..+++|+.|++++|.+..+| .+..+++|+.|++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 76 542 1211111 123346666666655433 1111 13445555555555555555555 4555555555555
Q ss_pred cCcccCCCcChhhhhcCcc-ceEEEecCCccccccccc--------------------------------cccCCcEEEe
Q 042610 135 SHNKLAGNFPTWLLENNTK-LELLYLVNNSFSGFQLTS--------------------------------AQHGLLSLDI 181 (351)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~--------------------------------~~~~L~~L~l 181 (351)
++|.+. .+|..+ ..+++ |+.|++++|.+..++... ..++|+.|++
T Consensus 603 s~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTS-CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHH-hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 555555 444432 34444 555555555544332111 1235556666
Q ss_pred eCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccccccc--CCCCc
Q 042610 182 SSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL--RSTEL 259 (351)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L 259 (351)
++|.+. .+|..++..+++|+.|++++|.+. .+|..+.... .....++++|+.|++++|.+. .++..+. .+++|
T Consensus 681 s~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~--~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 681 SYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK--DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp CSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT--TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred cCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc--cccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 666655 555555545666666666666665 4443322110 011223457788888887776 4555555 67788
Q ss_pred cEEEccCCcccccCCCCccCCCCCcEEEccC------cccccCcchhhhcccCCceeecCCCccccccccccccCcccEE
Q 042610 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSN------NHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACL 333 (351)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l 333 (351)
+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.+.. .|..+ .++|+.|
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l-~~~L~~L 832 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL-TPQLYIL 832 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC-CSSSCEE
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh-cCCCCEE
Confidence 888888888774 677777788888888765 66667777777788888888888887743 33333 3678888
Q ss_pred EccCccccc
Q 042610 334 YLQNNALGD 342 (351)
Q Consensus 334 ~l~~n~~~~ 342 (351)
++++|++..
T Consensus 833 dLs~N~l~~ 841 (876)
T 4ecn_A 833 DIADNPNIS 841 (876)
T ss_dssp ECCSCTTCE
T ss_pred ECCCCCCCc
Confidence 888887653
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-33 Score=269.97 Aligned_cols=318 Identities=19% Similarity=0.236 Sum_probs=243.5
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCc-CCC-CCchhhccCC-------CCCeEEeecccccCCCcchh
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNK-LSG-ILPSVIANLT-------SLEYLALYDNRFKGRLFSFY 73 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~ 73 (351)
++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+.+++ +|++|++++|.+...+ ...
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip-~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP-ASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC-CHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC-Chh
Confidence 78999999999999888999999999999999999998 886 6777666655 9999999999887322 223
Q ss_pred hhcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCC-ceEEEccCcccCCCcChhhhh---
Q 042610 74 SLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFN-LKYLDLSHNKLAGNFPTWLLE--- 149 (351)
Q Consensus 74 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~--- 149 (351)
.+.++++|+.+++..+... ..+ .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 5677888888888877654 333 667777888888888877777777777777 777777777765 55532210
Q ss_pred ---------------------------cCccceEEEecCCcccccccc--ccccCCcEEEeeCCccccccCchhhhcC--
Q 042610 150 ---------------------------NNTKLELLYLVNNSFSGFQLT--SAQHGLLSLDISSNSFTGELPQNMDIVL-- 198 (351)
Q Consensus 150 ---------------------------~~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l-- 198 (351)
..++|+.|++++|.+..++.. ..++.|+.|++++|.+. .+|..++...
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 123566777777776655432 25789999999999998 8888776433
Q ss_pred -----CCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccC------C
Q 042610 199 -----PKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISN------N 267 (351)
Q Consensus 199 -----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~ 267 (351)
++|+.|++++|.+. .+|..+. ...+++|+.|++++|.+.+ ++..+..+++|+.|++++ |
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~--------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFR--------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGS--------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred cccccCCccEEECCCCCCc-cchHHhh--------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 28999999999987 5665432 1256799999999999987 677888999999999976 7
Q ss_pred cccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcc
Q 042610 268 ILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNA 339 (351)
Q Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~ 339 (351)
.+.+.+|..++.+++|++|++++|.+ +.+|..+. ++|+.|++++|++....+..+ ....+..+.+.+|+
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 77778999999999999999999999 57887754 799999999999987665555 33344455555544
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=263.38 Aligned_cols=195 Identities=22% Similarity=0.243 Sum_probs=132.6
Q ss_pred hcCccceEEEecCCccccccccc-cccCCcEEEeeCCccccccCchhh-------------------hcCCCceEEEeec
Q 042610 149 ENNTKLELLYLVNNSFSGFQLTS-AQHGLLSLDISSNSFTGELPQNMD-------------------IVLPKLVYMNVSK 208 (351)
Q Consensus 149 ~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-------------------~~l~~L~~L~l~~ 208 (351)
..+++|+.|++++|.+..++... .. .|++|++++|.+. .+|.... ..+++|+.|++++
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC
Confidence 34567777777777766544322 22 5555555555554 4433210 2456666666666
Q ss_pred CccccCC--CCCccccccch-------------hhhcCccccceeeecccccccccc-ccccCCCCccEEEccCCccccc
Q 042610 209 NSFEGNI--PSSIGKMQGLL-------------ATYMNMTQLWALYLHNDNFSRKIK-DGLLRSTELEDLDISNNILSGH 272 (351)
Q Consensus 209 ~~~~~~~--~~~~~~~~~l~-------------~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 272 (351)
|.+.+.. +..+..++++. ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred CccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 6654321 22222222222 225566777777777777666544 4567788888888888888877
Q ss_pred CCCCccCCCCCcEEEccCcccc-cCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcccccccc
Q 042610 273 IPSWMGNFSHLHTLSMSNNHLE-GNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFV 345 (351)
Q Consensus 273 ~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p 345 (351)
.+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+++..+..+ .+++|++|++++|++++..|
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 7788888889999999999887 4678888889999999999999988777777 88999999999998876544
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=255.73 Aligned_cols=299 Identities=19% Similarity=0.184 Sum_probs=145.7
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
+++++|++++|.++...+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+...+. ..+..+++|+.+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL--GVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT--TSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc--ccccCCCCCCEE
Confidence 356666666666665555566666666666666666665556666666666666666666553221 233445555555
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcC-CchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI-PNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (351)
++..+... ......+..+.+|+.|++++|.+..+ +..+..+++|+.|++++|.+. .++...+..+++|+.|++.+|.
T Consensus 110 ~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 110 DISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp ECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCC
T ss_pred ECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCc
Confidence 55544321 12222344445555555555554333 234444555555555555544 3444334445555555555555
Q ss_pred cccccc--cccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeec
Q 042610 164 FSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLH 241 (351)
Q Consensus 164 l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 241 (351)
+..... ...+++|+.|+++++...+.++...+ ...+|+.|++++|.+. .+|. ..+..+++|+.|+++
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~-~~~~---------~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLT-AVPY---------LAVRHLVYLRFLNLS 256 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCC-SCCH---------HHHTTCTTCCEEECC
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCccc-ccCH---------HHhcCccccCeeECC
Confidence 444322 12344455555555444434444333 2334555555554443 1111 112233444555555
Q ss_pred cccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 242 NDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 54444444444444445555555555444444444444455555555555444433344444445555555554443
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-32 Score=241.01 Aligned_cols=305 Identities=21% Similarity=0.242 Sum_probs=254.8
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
+++++++|+++++.+. .++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~----~~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI----SALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCS
T ss_pred hcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc----hHHcCCCcCC
Confidence 5688999999999997 444 38899999999999999986543 89999999999999988752 3578899999
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
.+++.++...... .+..+++|+.|++++|.....+..+..+++|+.+++++|.+. .++. +..+++|+.|++++|
T Consensus 114 ~L~l~~n~i~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCG---GGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCch---hhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCC
Confidence 9999987644322 277888999999999976555556889999999999999987 4444 578999999999999
Q ss_pred ccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecc
Q 042610 163 SFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHN 242 (351)
Q Consensus 163 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 242 (351)
.+...+....++.|+.+++++|.+. .++. ...+++|+.|++++|.+.+. +. +..+++|++|++++
T Consensus 188 ~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~-~~-----------~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 188 QIEDISPLASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDL-SP-----------LANLSQLTWLEIGT 252 (347)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-----------GTTCTTCCEEECCS
T ss_pred cccccccccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCC-cc-----------hhcCCCCCEEECCC
Confidence 9998877778999999999999987 3333 34799999999999988642 21 45677999999999
Q ss_pred ccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccc
Q 042610 243 DNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 253 n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 253 NQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 988764 4578899999999999999843 457899999999999999998888999999999999999999998766
Q ss_pred cccccCcccEEEccCcccc
Q 042610 323 STLNLSSVACLYLQNNALG 341 (351)
Q Consensus 323 ~~~~~~~L~~l~l~~n~~~ 341 (351)
...+++|++|++++|+++
T Consensus 329 -~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSCC---
T ss_pred -hhhhhccceeehhhhccc
Confidence 338999999999999986
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=258.55 Aligned_cols=145 Identities=20% Similarity=0.289 Sum_probs=102.9
Q ss_pred cCCCceEEEeecCccccCCCCCccccccch----------------hhhcCccccceeeeccccccccccc-cccCCCCc
Q 042610 197 VLPKLVYMNVSKNSFEGNIPSSIGKMQGLL----------------ATYMNMTQLWALYLHNDNFSRKIKD-GLLRSTEL 259 (351)
Q Consensus 197 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~----------------~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L 259 (351)
.+++|+.|++++|.+.+..|..+..++++. ..+..+++|+.|++++|.+.+.++. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 567777888888877766666655555433 2355667777777777777764443 35666777
Q ss_pred cEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCc
Q 042610 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNN 338 (351)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n 338 (351)
+.|++++|.+++..+..+. ++|+.|++++|.+. .+|..+..+++|++|++++|+++..+...+ .+++|++|++++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 7777777777655554443 67888888888887 677766788888888888888886555545 7888888888888
Q ss_pred cccccc
Q 042610 339 ALGDRF 344 (351)
Q Consensus 339 ~~~~~~ 344 (351)
++++.-
T Consensus 479 ~~~c~c 484 (520)
T 2z7x_B 479 PWDCSC 484 (520)
T ss_dssp CBCCCH
T ss_pred CCcccC
Confidence 886543
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-32 Score=243.94 Aligned_cols=310 Identities=19% Similarity=0.184 Sum_probs=259.4
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
.++++++++++++.+....+..+.++++|++|++++|.+.+..+.+|..+++|++|++++|.+.+.+ ...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC--HHHhcCCCCCC
Confidence 3588999999999998555556789999999999999999777778999999999999999987533 23567889999
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecC
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (351)
.+++.++... ..+...+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+. .++ ...+++|+.+++++
T Consensus 121 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCS
T ss_pred EEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccc
Confidence 9999987643 344444678889999999999997764 56888999999999999987 454 45689999999999
Q ss_pred CccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeec
Q 042610 162 NSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLH 241 (351)
Q Consensus 162 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 241 (351)
|.+..+. ..+.|+.|++++|.+. .++.. ..++|+.|++++|.+.+. ..+..+++|++|+++
T Consensus 196 n~l~~~~---~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~------------~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 196 NLLSTLA---IPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT------------AWLLNYPGLVEVDLS 256 (390)
T ss_dssp SCCSEEE---CCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC------------GGGGGCTTCSEEECC
T ss_pred ccccccC---CCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc------------HHHcCCCCccEEECC
Confidence 9887653 4568999999999987 55543 358999999999988742 134567799999999
Q ss_pred cccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccc
Q 042610 242 NDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSM 321 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 321 (351)
+|.+.+..+..+..+++|+.|++++|.++ .++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++...
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC
Confidence 99999888888999999999999999998 45666788999999999999998 67777889999999999999998764
Q ss_pred ccccccCcccEEEccCccccc
Q 042610 322 ISTLNLSSVACLYLQNNALGD 342 (351)
Q Consensus 322 ~~~~~~~~L~~l~l~~n~~~~ 342 (351)
. ..+++|++|++++|++..
T Consensus 335 ~--~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 335 L--STHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp C--CTTCCCSEEECCSSCEEH
T ss_pred c--hhhccCCEEEcCCCCccc
Confidence 2 268999999999999864
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-32 Score=258.36 Aligned_cols=312 Identities=20% Similarity=0.204 Sum_probs=175.8
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
+++++|++++|.+++..+..++++++|++|++++|.+++..|.++.++++|++|++++|.+...+. ..+.++++|+.+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--TTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--hhhccCCCCCEE
Confidence 356677777776665555556667777777777776666666666667777777776666653222 235556666666
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcC-CchhhcCCCceEEEccCcccCCCcChhh-hhcCccceEEEecCC
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI-PNFLLLQFNLKYLDLSHNKLAGNFPTWL-LENNTKLELLYLVNN 162 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~ 162 (351)
++..+.. .......+..+++|++|++++|.+... +..+..+++|+.|++++|.+.+..+..+ ...+++|+.|++++|
T Consensus 103 ~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCcc-CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 6665542 222333455556666666666655333 3344555566666666555542222211 112345555555554
Q ss_pred cccccc---------------------------------------------------cc--ccc--cCCcEEEeeCCccc
Q 042610 163 SFSGFQ---------------------------------------------------LT--SAQ--HGLLSLDISSNSFT 187 (351)
Q Consensus 163 ~l~~~~---------------------------------------------------~~--~~~--~~L~~L~l~~~~~~ 187 (351)
.+.... .. ..+ +.|+.|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 443221 11 112 23777777777776
Q ss_pred cccCchhhhcCCCceEEEeecCccccCCCCCccccccchh-----------------------hhcCccccceeeecccc
Q 042610 188 GELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLA-----------------------TYMNMTQLWALYLHNDN 244 (351)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-----------------------~~~~~~~L~~L~l~~~~ 244 (351)
+..+..+ ..+++|+.|++++|.+.+..+..+..++++.. .+..+++|++|++++|.
T Consensus 262 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 VVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 3333333 36777888888877777666655554443321 34456677777777777
Q ss_pred ccccccccccCCCCccEEEccCC----------------------------cccccCCCCccCCCCCcEEEccCcccccC
Q 042610 245 FSRKIKDGLLRSTELEDLDISNN----------------------------ILSGHIPSWMGNFSHLHTLSMSNNHLEGN 296 (351)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~----------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 296 (351)
+.+..+..+..+++|++|++++| .+.+..+..+..+++|+.|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 76665555555555555555443 33333445556666666666666666544
Q ss_pred cc-hhhhcccCCceeecCCCccccc
Q 042610 297 IP-VQCQNLAGLYIPDISENNLSGS 320 (351)
Q Consensus 297 ~~-~~~~~~~~L~~L~l~~n~~~~~ 320 (351)
+| ..+..+++|+.|++++|.+.+.
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~ 445 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQL 445 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred cCcccccCcccccEEecCCCCccee
Confidence 43 4556666666666666655443
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-32 Score=250.20 Aligned_cols=310 Identities=19% Similarity=0.151 Sum_probs=239.3
Q ss_pred CCCCCCccEEEccCcccccc-CCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccc
Q 042610 1 ICELKNLFELNFGGNKFEGH-LPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLS 79 (351)
Q Consensus 1 l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 79 (351)
+.++++|++|++++|.+... .+..+.++++|++|++++|++++..|.+|.++++|++|++++|.+.+.......+..++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 46789999999999988644 46678999999999999999988888889999999999999998864223333477889
Q ss_pred cccccccccccccceeeecCcCCccceeEEEcCCCCCCcC-CchhhcC--CCceEEEccCcccCCCcChhh--------h
Q 042610 80 KFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI-PNFLLLQ--FNLKYLDLSHNKLAGNFPTWL--------L 148 (351)
Q Consensus 80 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~L~~l~l~~~~~~~~~~~~~--------~ 148 (351)
+|+.+++..+......+...+..+++|++|++++|.+..+ +..+..+ .+++.++++++.+. .++... +
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNP 208 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhccccccccc
Confidence 9999999988755444444477888999999999988554 4444444 35666666666555 222111 1
Q ss_pred hcCccceEEEecCCcccccccc-----------------------------------------ccccCCcEEEeeCCccc
Q 042610 149 ENNTKLELLYLVNNSFSGFQLT-----------------------------------------SAQHGLLSLDISSNSFT 187 (351)
Q Consensus 149 ~~~~~L~~L~l~~~~l~~~~~~-----------------------------------------~~~~~L~~L~l~~~~~~ 187 (351)
..+++|+.|++++|.+...... ...++|+.|++++|.+.
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 1335566666666554321100 02368999999999998
Q ss_pred cccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCC
Q 042610 188 GELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNN 267 (351)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (351)
+..+..+. .+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 289 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 289 ALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFW----------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp EECTTTTT-TCTTCCEEECTTSCCCEECTTTTT----------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred ccchhhcc-cCCCCCEEECCCCcccccChhHhc----------CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 55565554 899999999999999866665544 4568999999999998888888999999999999999
Q ss_pred cccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccc
Q 042610 268 ILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
.+++..|..+..+++|++|++++|++++..+..++.+++|+.|++++|++....+
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9998888999999999999999999997777778999999999999999987655
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.2e-32 Score=246.18 Aligned_cols=307 Identities=24% Similarity=0.288 Sum_probs=207.7
Q ss_pred CCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 2 CELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
..+++|++|++++|.+.+. +. +.++++|++|++++|.+.+..+ +.++++|++|++++|.+...+ .+..+++|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L 136 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID----PLKNLTNL 136 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTC
T ss_pred hhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh----HHcCCCCC
Confidence 3466777777777776633 32 6667777777777776664433 666777777777766655421 25556666
Q ss_pred ccccccccccccee------------------eecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCc
Q 042610 82 EAFQLSMETDLLQV------------------EIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNF 143 (351)
Q Consensus 82 ~~l~l~~~~~~~~~------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 143 (351)
+.+++..+...... ....+..+++|+.|++++|.+..++ .+..+++|+.+++++|.+.+..
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccc
Confidence 66666554322111 1112455566777777777765553 3566677777777777766333
Q ss_pred ChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccc
Q 042610 144 PTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQ 223 (351)
Q Consensus 144 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 223 (351)
+ +..+++|+.|++++|.+...+....+++|+.|++++|.+.+ .+. ...+++|+.|++++|.+.+..
T Consensus 216 ~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~-------- 281 (466)
T 1o6v_A 216 P---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNIS-------- 281 (466)
T ss_dssp G---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCG--------
T ss_pred c---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCccc--------
Confidence 3 34567777777777777666555566777777777777663 222 235677777777777665311
Q ss_pred cchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhc
Q 042610 224 GLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQN 303 (351)
Q Consensus 224 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 303 (351)
.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..
T Consensus 282 ----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 351 (466)
T 1o6v_A 282 ----PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN 351 (466)
T ss_dssp ----GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ----cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc
Confidence 13456788899998888876544 6778889999999998886554 67888999999999988854 46788
Q ss_pred ccCCceeecCCCccccccccccccCcccEEEccCccccc
Q 042610 304 LAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGD 342 (351)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~ 342 (351)
+++|+.|++++|++.+..+ ...+++|++|++++|++++
T Consensus 352 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 8999999999999888766 3388999999999998876
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-32 Score=256.61 Aligned_cols=145 Identities=18% Similarity=0.295 Sum_probs=87.4
Q ss_pred cCCCceEEEeecCccccCCCCCccccccch----------------hhhcCccccceeeecccccccccc-ccccCCCCc
Q 042610 197 VLPKLVYMNVSKNSFEGNIPSSIGKMQGLL----------------ATYMNMTQLWALYLHNDNFSRKIK-DGLLRSTEL 259 (351)
Q Consensus 197 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~----------------~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 259 (351)
.+++|+.|++++|.+.+..|..+..++++. ..+..+++|+.|++++|.+.+.++ ..+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 456777777777777765665554444322 123455566666666666555333 234555666
Q ss_pred cEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCc
Q 042610 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNN 338 (351)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n 338 (351)
+.|++++|.+++..+..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++..++..+ .+++|+++++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 6666666666544443332 56677777777666 555555567777777777777775554434 6777777777777
Q ss_pred cccccc
Q 042610 339 ALGDRF 344 (351)
Q Consensus 339 ~~~~~~ 344 (351)
++.++.
T Consensus 508 ~~~c~c 513 (562)
T 3a79_B 508 PWDCTC 513 (562)
T ss_dssp CBCCCH
T ss_pred CcCCCc
Confidence 776543
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-31 Score=255.93 Aligned_cols=337 Identities=24% Similarity=0.222 Sum_probs=231.6
Q ss_pred CCccEEEccCccccccCCccccCCCC--CcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTH--LKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
++|++|++++|.+.+..|..+.+++. |++|++++|++.+..+..|..+++|++|++++|.+.+. ....+..+++|+
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~ 299 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL--FSHSLHGLFNVR 299 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE--CTTTTTTCTTCC
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc--ChhhhcCCCCcc
Confidence 67888899998888777888887755 99999999988877778888899999999999887642 223566778888
Q ss_pred ccccccccccc--------eeeecCcCCccceeEEEcCCCCCCcC-CchhhcCCCceEEEccCcccCC-CcChhhhhc--
Q 042610 83 AFQLSMETDLL--------QVEIENCLPTFQLKVLSLPNCNLGAI-PNFLLLQFNLKYLDLSHNKLAG-NFPTWLLEN-- 150 (351)
Q Consensus 83 ~l~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~-- 150 (351)
.+++..+.... ......+..+++|+.|++++|.+..+ +..+..+++|+.+++++|.+.. .++...+..
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 88887543221 11222566778888888888888655 4457777888888888776432 222222222
Q ss_pred CccceEEEecCCcccccccc--ccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccch--
Q 042610 151 NTKLELLYLVNNSFSGFQLT--SAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL-- 226 (351)
Q Consensus 151 ~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-- 226 (351)
.++|+.|++++|.+...... ..+++|+.|++++|.+.+.++...+..+++|+.|++++|.+.+..+..+..++++.
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 24677777777777665332 35667777777777776556654445677777777777766554444444333222
Q ss_pred --------------hhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccC--------CCCccCCCCCc
Q 042610 227 --------------ATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHI--------PSWMGNFSHLH 284 (351)
Q Consensus 227 --------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~l~~L~ 284 (351)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+..+++|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 23456677888888888777766666777788888888888776421 12356777788
Q ss_pred EEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcccccc
Q 042610 285 TLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDR 343 (351)
Q Consensus 285 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~ 343 (351)
+|++++|.+....+..|..+++|+.|++++|+++..++..+ .+++|++|++++|++++.
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 88888887774444567777888888888887777666666 677788888888777654
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=267.85 Aligned_cols=89 Identities=22% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCCccEEEccCCccc-----ccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcc
Q 042610 256 STELEDLDISNNILS-----GHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSV 330 (351)
Q Consensus 256 ~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L 330 (351)
+++|+.|++++|.+. +..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.++..+. ++|
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L 528 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANL 528 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCC
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccc
Confidence 344444444444443 12223455566666666666666655566666666666666666666665544443 566
Q ss_pred cEEEccCcccccccc
Q 042610 331 ACLYLQNNALGDRFV 345 (351)
Q Consensus 331 ~~l~l~~n~~~~~~p 345 (351)
++|++++|++++..|
T Consensus 529 ~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 529 EILDISRNQLLAPNP 543 (844)
T ss_dssp CEEEEEEECCCCCCS
T ss_pred cEEECCCCcCCCCCh
Confidence 666666666665554
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-31 Score=249.97 Aligned_cols=310 Identities=19% Similarity=0.187 Sum_probs=260.7
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
+++++.++++++.+....+..+.++++|++|++++|.+.+..+.+|..+++|++|++++|.+.+.+. ..+.++++|+.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH--HHHcCCCCCCE
Confidence 5788999999999986666668899999999999999998888889999999999999999875333 35678899999
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
+++.++... ..+...+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+. .++ ...+++|+.|++++|
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCSS
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhcccC
Confidence 999987643 444445678899999999999997664 56888999999999999987 455 356899999999999
Q ss_pred ccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecc
Q 042610 163 SFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHN 242 (351)
Q Consensus 163 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 242 (351)
.+..+. .++.|+.|++++|.+. .++..+ .++|+.|++++|.+.+ +. .+..+++|+.|++++
T Consensus 203 ~l~~l~---~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~----------~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 203 LLSTLA---IPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TA----------WLLNYPGLVEVDLSY 263 (597)
T ss_dssp CCSEEE---CCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CG----------GGGGCTTCSEEECCS
T ss_pred cccccc---CCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--Ch----------hhccCCCCCEEECCC
Confidence 887653 4568999999999987 554433 4789999999998874 22 345677999999999
Q ss_pred ccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccc
Q 042610 243 DNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
|.+.+..+..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+.
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred CccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcCh
Confidence 99999888899999999999999999984 5677788999999999999998 678888999999999999999987642
Q ss_pred cccccCcccEEEccCcccccc
Q 042610 323 STLNLSSVACLYLQNNALGDR 343 (351)
Q Consensus 323 ~~~~~~~L~~l~l~~n~~~~~ 343 (351)
. .+++|++|++++|++.+.
T Consensus 342 ~--~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 342 S--THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp C--TTCCCSEEECCSSCEEHH
T ss_pred h--hcCCCCEEEeeCCCCCCh
Confidence 2 689999999999998643
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=9e-31 Score=238.93 Aligned_cols=305 Identities=23% Similarity=0.267 Sum_probs=214.4
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
++++++|++.++.+. .+|. +..+++|++|++++|.+++..+ +.++++|++|++++|.+..... +.++++|+.
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh----hcCCCCCCE
Confidence 578999999999987 4554 8889999999999999986644 8999999999999998875322 778999999
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEc---------------------cCcccCCC
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDL---------------------SHNKLAGN 142 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l---------------------~~~~~~~~ 142 (351)
+++..+...... .+..+++|+.|++++|.+..++. +..+++|+.+++ ++|.+. .
T Consensus 117 L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 191 (466)
T 1o6v_A 117 LTLFNNQITDID---PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-D 191 (466)
T ss_dssp EECCSSCCCCCG---GGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-C
T ss_pred EECCCCCCCCCh---HHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-C
Confidence 999987543322 37788899999999998866543 444545555544 444443 2
Q ss_pred cChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCcccc
Q 042610 143 FPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKM 222 (351)
Q Consensus 143 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 222 (351)
++. +..+++|+.|++++|.+........+++|++|++++|.+. .++ .+ ..+++|+.|++++|.+.+..
T Consensus 192 ~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~------- 259 (466)
T 1o6v_A 192 ISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIG-TL-ASLTNLTDLDLANNQISNLA------- 259 (466)
T ss_dssp CGG--GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCG-------
T ss_pred Chh--hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cch-hh-hcCCCCCEEECCCCccccch-------
Confidence 221 2344445555555544444433334445555555555444 221 11 24555555555555443211
Q ss_pred ccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhh
Q 042610 223 QGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQ 302 (351)
Q Consensus 223 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 302 (351)
.+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ ++.+++|++|++++|.+.+..| +.
T Consensus 260 -----~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 260 -----PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp -----GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred -----hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 14566788888888888876544 6778889999999998875433 7788999999999999886655 67
Q ss_pred cccCCceeecCCCccccccccccccCcccEEEccCcccccccc
Q 042610 303 NLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGDRFV 345 (351)
Q Consensus 303 ~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 345 (351)
.+++|+.|++++|.+.+. +....+++|++|++++|++++..|
T Consensus 329 ~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch
Confidence 899999999999988875 322389999999999999988776
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=6.6e-31 Score=230.92 Aligned_cols=284 Identities=25% Similarity=0.329 Sum_probs=240.1
Q ss_pred CCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 2 CELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
..+++|++|++++|.+++ ++. +.++++|++|++++|.+++. .++.++++|++|++++|.+...+ .+..+++|
T Consensus 63 ~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~----~~~~l~~L 134 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS----PLANLTKM 134 (347)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCG----GGTTCTTC
T ss_pred hhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCch----hhccCCce
Confidence 568999999999999984 444 89999999999999999854 36899999999999999887522 27789999
Q ss_pred cccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecC
Q 042610 82 EAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 82 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (351)
+.+++.++...... ..+..+++|++|++++|.+..++. +..+++|+.+++++|.+. .++. +..+++|+.+++++
T Consensus 135 ~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 135 YSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYV 208 (347)
T ss_dssp CEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCS
T ss_pred eEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc-cccc--ccCCCccceeeccc
Confidence 99999988654433 347888999999999999977765 788999999999999987 5555 57899999999999
Q ss_pred CccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeec
Q 042610 162 NSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLH 241 (351)
Q Consensus 162 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 241 (351)
|.+........+++|++|++++|.+. .++. ...+++|+.|++++|.+.+ + ..+..+++|+.|+++
T Consensus 209 n~l~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~-----------~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 209 NQITDITPVANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISD-I-----------NAVKDLTKLKMLNVG 273 (347)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-----------GGGTTCTTCCEEECC
T ss_pred CCCCCCchhhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCC-C-----------hhHhcCCCcCEEEcc
Confidence 99998877778999999999999998 4544 3479999999999998864 2 124567899999999
Q ss_pred cccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 242 NDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
+|.+.+. ..+..+++|+.|++++|.+++..+..++.+++|++|++++|++++..| ++.+++|++|++++|.++
T Consensus 274 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 274 SNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9988775 457889999999999999988888888999999999999999996655 888999999999999875
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.3e-30 Score=241.30 Aligned_cols=144 Identities=25% Similarity=0.280 Sum_probs=78.8
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccc
Q 042610 8 FELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLS 87 (351)
Q Consensus 8 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 87 (351)
++++++++.++ .+|..+. ++|++|++++|++++..+.+|.++++|++|++++|.+.+ .....+..+++|+.+++.
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY--LDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC--cChHHhhcccCCCEEecC
Confidence 45666666665 4554443 566666666666665555566666666666666665542 112345556666666666
Q ss_pred cccccceeeecCcCCccceeEEEcCCCCCCc--CCchhhcCCCceEEEccCcccCCCcChhhhhcCccc--eEEEecCCc
Q 042610 88 METDLLQVEIENCLPTFQLKVLSLPNCNLGA--IPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKL--ELLYLVNNS 163 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 163 (351)
++... ..+.. .+.+|++|++++|.+.. +|..+..+++|+.|++++|.+.+ ..+..+++| +.|++++|.
T Consensus 78 ~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 78 HNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp SSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECT
T ss_pred CCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccc
Confidence 55433 12211 45566666666666643 34566666666666666665542 113344455 555555554
Q ss_pred c
Q 042610 164 F 164 (351)
Q Consensus 164 l 164 (351)
+
T Consensus 150 l 150 (520)
T 2z7x_B 150 T 150 (520)
T ss_dssp T
T ss_pred c
Confidence 4
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1e-31 Score=250.50 Aligned_cols=181 Identities=17% Similarity=0.077 Sum_probs=151.7
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
+++++|++++|.+++..|..+.++++|++|++++|++++..|.+|.++++|++|++++|.+.+.+ ...+..+++|+.+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS--SSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC--HHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC--HHHhccCCCCcEE
Confidence 58999999999999788888999999999999999999888889999999999999999987533 3357889999999
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCC-CCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCN-LGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
++.++..........+..+++|++|++++|. +..+| ..+..+++|+.|++++|.+.+..|.. +..+++|+.|+++.|
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence 9998875433334567888999999999998 56675 57888999999999999998556655 468899999999999
Q ss_pred cccccccc--ccccCCcEEEeeCCcccc
Q 042610 163 SFSGFQLT--SAQHGLLSLDISSNSFTG 188 (351)
Q Consensus 163 ~l~~~~~~--~~~~~L~~L~l~~~~~~~ 188 (351)
.+...+.. ..+++|+.|++++|.+.+
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccccchhhHhhcccccEEEccCCcccc
Confidence 87665432 257899999999998874
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=9.1e-31 Score=255.09 Aligned_cols=302 Identities=18% Similarity=0.117 Sum_probs=172.0
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCC-CchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGI-LPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
.+++++|+|++|.++...|..|.++++|++|++++|...+. .|.+|.++++|++|++++|.+.+. ....+.++++|+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL--HPDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE--CTTSSCSCSSCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc--CHhHccCCcccC
Confidence 35678888888888766777788888888888887754433 366778888888888888877532 233566777777
Q ss_pred cccccccccccee-eecCcCCccceeEEEcCCCCCCcC--CchhhcCCCceEEEccCcccCCCcChhhhhcC--ccceEE
Q 042610 83 AFQLSMETDLLQV-EIENCLPTFQLKVLSLPNCNLGAI--PNFLLLQFNLKYLDLSHNKLAGNFPTWLLENN--TKLELL 157 (351)
Q Consensus 83 ~l~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L 157 (351)
.+++..+...... ....+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.+..+..+ ..+ ++|+.|
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceE
Confidence 7777776543321 222366777777788777777554 2457777777888777777764444432 333 677777
Q ss_pred EecCCccccccccc--cc------cCCcEEEeeCCccccccCchhhhc--------------------------------
Q 042610 158 YLVNNSFSGFQLTS--AQ------HGLLSLDISSNSFTGELPQNMDIV-------------------------------- 197 (351)
Q Consensus 158 ~l~~~~l~~~~~~~--~~------~~L~~L~l~~~~~~~~~~~~~~~~-------------------------------- 197 (351)
+++.|.+....... .+ ..|+.|++++|.+.+..+..+...
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 77777665532211 11 137777777776554444333211
Q ss_pred -----CCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCccccc
Q 042610 198 -----LPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGH 272 (351)
Q Consensus 198 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (351)
.++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~----------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVF----------ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCS----------SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred hhccccCCccEEECCCCcccccChhhh----------hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 1234444444444332222222 2233445555555544444444444445555555555544434
Q ss_pred CCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 273 IPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 273 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
.+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 4444445555555555555444444444444555555555555444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1e-30 Score=237.04 Aligned_cols=285 Identities=18% Similarity=0.185 Sum_probs=163.7
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
++++|++|++++|.+++ +| .++.+++|++|++++|++++. + +..+++|++|++++|.+.+. .+..+++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-----DVTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-----CCTTCTTCC
T ss_pred HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-----ecCCCCcCC
Confidence 46788888888888874 45 578888888888888888764 2 77888888888888887653 156677888
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
.+++.++..... .+..+++|+.|++++|.+..++ +..+++|+.+++++|...+.++ +..+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~l----~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSCC----CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred EEECCCCcCCee----cCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence 888877654332 2566677788888877776653 5556666666666664433442 345566666666666
Q ss_pred ccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCcccc---------------------CCCCCccc
Q 042610 163 SFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEG---------------------NIPSSIGK 221 (351)
Q Consensus 163 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------~~~~~~~~ 221 (351)
.+..++ ...++.|+.|++++|.+. .++ + ..+++|+.|++++|.+.+ ..+..+..
T Consensus 181 ~l~~l~-l~~l~~L~~L~l~~N~l~-~~~--l-~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 181 KITELD-VSQNKLLNRLNCDTNNIT-KLD--L-NQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CCCCCC-CTTCTTCCEEECCSSCCS-CCC--C-TTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred ccceec-cccCCCCCEEECcCCcCC-eec--c-ccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 655543 344555555555555554 221 1 234555555555555443 22111111
Q ss_pred cccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCC--------CccCCCCCcEEEccCccc
Q 042610 222 MQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPS--------WMGNFSHLHTLSMSNNHL 293 (351)
Q Consensus 222 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~l~~L~~L~l~~~~~ 293 (351)
++ .......+|+.+++++|...+.++ ++.+++|+.|++++|...+.+|. .++.+++|++|++++|.+
T Consensus 256 L~---~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 256 LT---TLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330 (457)
T ss_dssp CC---EEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CC---EEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence 11 111122234444444444444333 23445555666655543322221 234455666666666666
Q ss_pred ccCcchhhhcccCCceeecCCCcccc
Q 042610 294 EGNIPVQCQNLAGLYIPDISENNLSG 319 (351)
Q Consensus 294 ~~~~~~~~~~~~~L~~L~l~~n~~~~ 319 (351)
++. + +..+++|+.|++++|++.+
T Consensus 331 ~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 331 TEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp SCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ccc-c--cccCCcCcEEECCCCCCCC
Confidence 542 2 5556666666666666554
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=237.88 Aligned_cols=281 Identities=22% Similarity=0.239 Sum_probs=237.2
Q ss_pred CCCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccc
Q 042610 1 ICELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSK 80 (351)
Q Consensus 1 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 80 (351)
+.++++|++|+|++|.+.+..|..|.++++|++|++++|+++...+..|.++++|++|++++|.+... ....+..+++
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~ 129 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYN 129 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCTT
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC--ChhHcccccc
Confidence 46789999999999999988899999999999999999999977777789999999999999988742 2345778999
Q ss_pred ccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEe
Q 042610 81 FEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYL 159 (351)
Q Consensus 81 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 159 (351)
|+.+++..+... ......+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+. .++...+..+++|+.|++
T Consensus 130 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 130 LKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp CCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEE
T ss_pred CCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeC
Confidence 999999887633 3444567888999999999999988875 5888999999999999988 566555788999999999
Q ss_pred cCCcccccccc--ccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccce
Q 042610 160 VNNSFSGFQLT--SAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWA 237 (351)
Q Consensus 160 ~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 237 (351)
++|........ ....+|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+ ..+++|++
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------~~l~~L~~ 276 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML----------HELLRLQE 276 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSC----------TTCTTCCE
T ss_pred CCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhc----------cccccCCE
Confidence 99876543222 24458999999999998 7887666689999999999999875544443 45668999
Q ss_pred eeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccC
Q 042610 238 LYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGN 296 (351)
Q Consensus 238 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 296 (351)
|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 99999999998888999999999999999999966666788999999999999998743
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-29 Score=220.50 Aligned_cols=286 Identities=19% Similarity=0.230 Sum_probs=207.7
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
++++++++++.++ .+|..+. +++++|++++|++++..+.+|.++++|++|++++|.+.+.
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 91 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----------------- 91 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-----------------
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-----------------
Confidence 5666777666665 4454332 5677777777777766555677777777777777765431
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
....+..+++|++|++++|.+..+|..+. ++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 92 ----------~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 92 ----------SPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCC
T ss_pred ----------CHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCC
Confidence 12234556678888888888887776554 58999999988887 666666778889999999988886
Q ss_pred ccc----ccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeec
Q 042610 166 GFQ----LTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLH 241 (351)
Q Consensus 166 ~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 241 (351)
... ....+++|+.|++++|.+. .+|..+ .++|+.|++++|.+.+..+..+ ..+++|++|+++
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~Ls 224 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASL----------KGLNNLAKLGLS 224 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGG----------TTCTTCCEEECC
T ss_pred ccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHh----------cCCCCCCEEECC
Confidence 421 2346788888898888887 666654 3788999999888875444433 455688899999
Q ss_pred cccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhc------ccCCceeecCCC
Q 042610 242 NDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQN------LAGLYIPDISEN 315 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n 315 (351)
+|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..+..|.. .+.++.+++.+|
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 88888777777888889999999999888 77888888999999999999988666555543 377889999999
Q ss_pred cccc--cccccc-ccCcccEEEccCcc
Q 042610 316 NLSG--SMISTL-NLSSVACLYLQNNA 339 (351)
Q Consensus 316 ~~~~--~~~~~~-~~~~L~~l~l~~n~ 339 (351)
.+.. ..+..+ .+.+++.+++++|+
T Consensus 304 ~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccCccccccccceeEEEecccC
Confidence 8764 444555 78889999998885
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.9e-29 Score=235.50 Aligned_cols=323 Identities=20% Similarity=0.205 Sum_probs=209.2
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
+...++++++++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+. ....+..+++|+.
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL--DFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE--CTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC--CHHHhCCCCCCCE
Confidence 445589999999998 5776554 8999999999999988888999999999999999998742 2346788999999
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcC--CchhhcCCCceEEEccCcccCCCcChhhhhcCccc--eEEEe
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI--PNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKL--ELLYL 159 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l 159 (351)
+++.++... ..+.. .+.+|++|++++|.+..+ |..+..+++|+.|++++|.+.. .. +..+++| +.|++
T Consensus 105 L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L 176 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILL 176 (562)
T ss_dssp EECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEE
T ss_pred EECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEe
Confidence 999988754 22222 788999999999999775 4789999999999999999874 22 3455666 99999
Q ss_pred cCCcc--cccccc----------------------------ccccCCcEEEeeCCc------------------------
Q 042610 160 VNNSF--SGFQLT----------------------------SAQHGLLSLDISSNS------------------------ 185 (351)
Q Consensus 160 ~~~~l--~~~~~~----------------------------~~~~~L~~L~l~~~~------------------------ 185 (351)
++|.+ ...... ..++.|+.+++++|+
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99887 322110 023344455554442
Q ss_pred ----ccc----ccCchhhhcCCCceEEEeecCccccCCCCCc-----cccccchh-------------------------
Q 042610 186 ----FTG----ELPQNMDIVLPKLVYMNVSKNSFEGNIPSSI-----GKMQGLLA------------------------- 227 (351)
Q Consensus 186 ----~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~l~~------------------------- 227 (351)
+.+ .++... ..++|++|++++|.+.+.+|..+ ..++.+..
T Consensus 257 ~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 100 001111 12366666776666665555544 22221110
Q ss_pred -------------hhcCccccceeeeccccccccccccccCCCCccEEEccCCcccc--cCCCCccCCCCCcEEEccCcc
Q 042610 228 -------------TYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSG--HIPSWMGNFSHLHTLSMSNNH 292 (351)
Q Consensus 228 -------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 292 (351)
....+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..++.+++|++|++++|.
T Consensus 335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 00445666777777776666566666666666666666666653 122345556666666666666
Q ss_pred cccCcch-hhhcc----------------------cCCceeecCCCccccccccccccCcccEEEccCcccc
Q 042610 293 LEGNIPV-QCQNL----------------------AGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALG 341 (351)
Q Consensus 293 ~~~~~~~-~~~~~----------------------~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 341 (351)
+.+.+|. .+..+ ++|+.|++++|+++..+...+.+++|++|++++|+++
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 6543332 23333 4566666666666644444446677777777777766
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.4e-29 Score=238.37 Aligned_cols=332 Identities=23% Similarity=0.225 Sum_probs=203.8
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
++++|+|++|.++...+..|.++++|++|++++|+++++.+.+|.++++|++|++++|+++..+ ...+.++++|+.++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~--~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--GGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC--HHHhcCCCCCCEEE
Confidence 5788888888887666667888888888888888887766777888888888888888776422 23566777888888
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCCCc--CCchhhcCCCceEEEccCcccCCCcChhh----------------
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNLGA--IPNFLLLQFNLKYLDLSHNKLAGNFPTWL---------------- 147 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------- 147 (351)
+.++... ......+..+++|++|++++|.+.. +|..+..+++|+.|++++|.+.+..+..+
T Consensus 131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 7776532 2333446677778888888877743 45667777777777777765531111000
Q ss_pred --------------------------------------------------------------------------------
Q 042610 148 -------------------------------------------------------------------------------- 147 (351)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (351)
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence
Q ss_pred ----------------------------------hhcCccceEEEecCCccccccc---------------------ccc
Q 042610 148 ----------------------------------LENNTKLELLYLVNNSFSGFQL---------------------TSA 172 (351)
Q Consensus 148 ----------------------------------~~~~~~L~~L~l~~~~l~~~~~---------------------~~~ 172 (351)
+.....++.|++..+.+..+.. ...
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 0111234455555554433211 113
Q ss_pred ccCCcEEEeeCCcccc--ccCchhhhcCCCceEEEeecCccc-----------------------cCCC-CCccccccch
Q 042610 173 QHGLLSLDISSNSFTG--ELPQNMDIVLPKLVYMNVSKNSFE-----------------------GNIP-SSIGKMQGLL 226 (351)
Q Consensus 173 ~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~-----------------------~~~~-~~~~~~~~l~ 226 (351)
+++|+.++++.|.+.. ..+.... .+.+++.+++..+... ...+ ..+..+..+.
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHH-SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchh-hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 4566777776665531 1222221 3344444444433322 1111 1111111111
Q ss_pred --------------hhhcCccccceeeeccccccc-cccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCc
Q 042610 227 --------------ATYMNMTQLWALYLHNDNFSR-KIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNN 291 (351)
Q Consensus 227 --------------~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (351)
..+..++.++.|++++|...+ ..+..+..+++|+.|++++|.+++..|..|+++++|++|++++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 233445667777777765433 34556667777777777777777666777777777777777777
Q ss_pred ccccCcchhhhcccCCceeecCCCcccccccccc-cc-CcccEEEccCcccc
Q 042610 292 HLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NL-SSVACLYLQNNALG 341 (351)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~l~l~~n~~~ 341 (351)
++.+..+..++.+++|++|++++|++++.++..+ ++ ++|++|++++|++.
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 7776667777777777777777777777777666 44 56777777777763
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.2e-30 Score=222.82 Aligned_cols=285 Identities=18% Similarity=0.197 Sum_probs=199.5
Q ss_pred CCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccceeEE
Q 042610 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVL 109 (351)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 109 (351)
+++.+++++++++ .+|..+ .++|++|++++|.+... ....+.++++|+.+++..+.. .......+..+++|++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISEL--RKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCcc--CHhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEE
Confidence 3445555444444 222222 23445555554444321 112234444444444444331 12223456667789999
Q ss_pred EcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccccccc----ccccCCcEEEeeCCc
Q 042610 110 SLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT----SAQHGLLSLDISSNS 185 (351)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~L~~L~l~~~~ 185 (351)
++++|.+..+|..+. ++|+.|++++|.+. .++...+..+++|+.|++++|.+...... ..+ +|+.|++++|.
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 999999988887655 68999999999988 67766678899999999999988642211 133 88999999999
Q ss_pred cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEcc
Q 042610 186 FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDIS 265 (351)
Q Consensus 186 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (351)
+. .+|..+. ++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 184 l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 184 LT-GIPKDLP---ETLNELHLDHNKIQAIELEDLL----------RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSST----------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CC-ccCcccc---CCCCEEECCCCcCCccCHHHhc----------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 88 6776543 7899999999988765554443 45688999999999888777778889999999999
Q ss_pred CCcccccCCCCccCCCCCcEEEccCcccccCcchhhhc------ccCCceeecCCCccc--ccccccc-ccCcccEEEcc
Q 042610 266 NNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQN------LAGLYIPDISENNLS--GSMISTL-NLSSVACLYLQ 336 (351)
Q Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n~~~--~~~~~~~-~~~~L~~l~l~ 336 (351)
+|.+. .+|..+..+++|++|++++|.+++..+..+.. .+.|+.+++.+|.+. ...+..+ .+++|+.++++
T Consensus 250 ~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred CCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 99998 78888899999999999999998666666544 367899999999887 4556666 78999999998
Q ss_pred Ccc
Q 042610 337 NNA 339 (351)
Q Consensus 337 ~n~ 339 (351)
+|+
T Consensus 329 ~n~ 331 (332)
T 2ft3_A 329 NYK 331 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 875
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.4e-29 Score=229.59 Aligned_cols=308 Identities=19% Similarity=0.210 Sum_probs=199.8
Q ss_pred CCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcc----------
Q 042610 2 CELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFS---------- 71 (351)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------- 71 (351)
.++++|++|++++|.+++ +| ++++++|++|++++|.+++. + +.++++|++|++++|.+.+.+..
T Consensus 61 ~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l 134 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNC 134 (457)
T ss_dssp GGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred cccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEEC
Confidence 345666666666666653 22 55566666666666665543 1 45555566666655555432100
Q ss_pred ------hhhhcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcCh
Q 042610 72 ------FYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPT 145 (351)
Q Consensus 72 ------~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 145 (351)
...+..+++|+.+++..+...... .+..+++|+.|++++|.+..+| +..+++|+.+++++|.+. .++
T Consensus 135 ~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~-~~~- 207 (457)
T 3bz5_A 135 ARNTLTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT-KLD- 207 (457)
T ss_dssp TTSCCSCCCCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS-CCC-
T ss_pred CCCccceeccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC-eec-
Confidence 001333444444444444322222 3556667778888887777766 667778888888888877 343
Q ss_pred hhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccc
Q 042610 146 WLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGL 225 (351)
Q Consensus 146 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 225 (351)
+..+++|+.|++++|.+.+++ ...+++|+.|++++|.+. .++.. .+++|+.++++.+.+.......-.....+
T Consensus 208 --l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~-~~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 208 --LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCS-CCCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred --cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCC-CcCHH---HCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 467788888888888888865 567788888898888887 34422 46667666666655442110000000011
Q ss_pred hhhhcCccccceeeeccccccccccc--------cccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCc
Q 042610 226 LATYMNMTQLWALYLHNDNFSRKIKD--------GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNI 297 (351)
Q Consensus 226 ~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 297 (351)
....+++|+.|++++|...+.++. .+..+++|+.|++++|.+++. + ++.+++|+.|++++|++.+
T Consensus 281 --~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-- 353 (457)
T 3bz5_A 281 --QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-- 353 (457)
T ss_dssp --ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred --cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence 134678999999999986665543 245668999999999999863 3 8899999999999999985
Q ss_pred chhhhcccCCceeecCCCccccccccccccCcccEEEccCccccccccc
Q 042610 298 PVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 298 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 346 (351)
++.|..|++.+|.+.+.. .+.++..+++++|+++|.+|.
T Consensus 354 ------l~~L~~L~l~~n~l~g~~----~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 354 ------FSSVGKIPALNNNFEAEG----QTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ------CTTGGGSSGGGTSEEEEE----EEEECCCBCCBTTBEEEECCT
T ss_pred ------ccccccccccCCcEEecc----eeeecCccccccCcEEEEcCh
Confidence 356777888888887652 356677888999999988884
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.1e-30 Score=221.60 Aligned_cols=251 Identities=25% Similarity=0.340 Sum_probs=159.2
Q ss_pred CCCcEEEccCCcCCC--CCchhhccCCCCCeEEeec-ccccCCCcchhhhcccccccccccccccccceeeecCcCCccc
Q 042610 29 THLKVLDVSSNKLSG--ILPSVIANLTSLEYLALYD-NRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQ 105 (351)
Q Consensus 29 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 105 (351)
.+++.|+++++++.+ ..|.++.++++|++|++++ |.+.+.... .+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~---------------------------~l~~l~~ 102 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP---------------------------AIAKLTQ 102 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG---------------------------GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh---------------------------hHhcCCC
Confidence 578888888888887 6777888888888888884 655431110 1222335
Q ss_pred eeEEEcCCCCCC-cCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCC
Q 042610 106 LKVLSLPNCNLG-AIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSN 184 (351)
Q Consensus 106 L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 184 (351)
|++|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.
T Consensus 103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~------------------- 162 (313)
T 1ogq_A 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRIS------------------- 162 (313)
T ss_dssp CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCE-------------------
T ss_pred CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCccc-------------------
Confidence 555555555553 556666667777777777777665555443 45566666666655554
Q ss_pred ccccccCchhhhcCC-CceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEE
Q 042610 185 SFTGELPQNMDIVLP-KLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLD 263 (351)
Q Consensus 185 ~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 263 (351)
+.+|..+. .++ +|+.|++++|.+.+..|..+.. ++ |+.|++++|.+.+..+..+..+++|+.|+
T Consensus 163 ---~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~----------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 163 ---GAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFAN----------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp ---EECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGG----------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred ---CcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhC----------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 23444443 333 5555555555555444443322 12 56666666666555566666677777777
Q ss_pred ccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCcc-ccc
Q 042610 264 ISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNA-LGD 342 (351)
Q Consensus 264 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~-~~~ 342 (351)
+++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++++..|....+++|+.+++.+|+ ++|
T Consensus 228 L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 777777644443 566777777777777777777777777777777777777777666655567777777777777 454
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.2e-29 Score=224.65 Aligned_cols=289 Identities=20% Similarity=0.239 Sum_probs=240.2
Q ss_pred CCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccce
Q 042610 27 NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQL 106 (351)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 106 (351)
.+++++.|+++++.+....+..+..+++|++|++++|.+.. .....+..+++|+.+++.++.. .......+..+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc--cChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCC
Confidence 46899999999999986666678999999999999998864 2334678899999999998763 33444567888999
Q ss_pred eEEEcCCCCCCcCCch-hhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCc
Q 042610 107 KVLSLPNCNLGAIPNF-LLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNS 185 (351)
Q Consensus 107 ~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~ 185 (351)
++|++++|.+..+|.. +..+++|+.|++++|.+. .++...+..+++|+.|++++|.+... ....+++|+.+++++|.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccccc
Confidence 9999999999988875 578999999999999998 55555567899999999999999876 45678999999999998
Q ss_pred cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEcc
Q 042610 186 FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDIS 265 (351)
Q Consensus 186 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (351)
+. .++ ..++|+.|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|++|+++
T Consensus 198 l~-~~~-----~~~~L~~L~l~~n~l~~~-~~~------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 198 LS-TLA-----IPIAVEELDASHNSINVV-RGP------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLS 256 (390)
T ss_dssp CS-EEE-----CCSSCSEEECCSSCCCEE-ECC------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cc-ccC-----CCCcceEEECCCCeeeec-ccc------------ccccccEEECCCCCCccc--HHHcCCCCccEEECC
Confidence 76 322 357899999999988632 221 235899999999998865 567889999999999
Q ss_pred CCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCccccc
Q 042610 266 NNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGD 342 (351)
Q Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~ 342 (351)
+|.+.+..|..+..+++|++|++++|.+. .++..+..+++|++|++++|.+...++....+++|++|++++|++++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce
Confidence 99999888889999999999999999998 45666778999999999999998765544489999999999999864
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.5e-27 Score=207.92 Aligned_cols=270 Identities=19% Similarity=0.178 Sum_probs=214.5
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
.+++++|++++|.+++..+..++++++|++|++++|++++..|.++.++++|++|++++|.+...+...
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~----------- 119 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM----------- 119 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-----------
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-----------
Confidence 367999999999999777778999999999999999999888899999999999999999876422210
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCC-CcChhhhhcCccceEEEecC
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAG-NFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~ 161 (351)
.++|+.|++++|.+..++. .+..+++|+.+++++|.+.. ......+..+++|+.|++++
T Consensus 120 -------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 120 -------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp -------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred -------------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 0378889999998877754 57888999999999998752 13333467889999999999
Q ss_pred CccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeec
Q 042610 162 NSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLH 241 (351)
Q Consensus 162 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 241 (351)
|.+..++. ...++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+..+ ..+++|++|+++
T Consensus 181 n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~----------~~l~~L~~L~L~ 248 (330)
T 1xku_A 181 TNITTIPQ-GLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSL----------ANTPHLRELHLN 248 (330)
T ss_dssp SCCCSCCS-SCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTG----------GGSTTCCEEECC
T ss_pred CccccCCc-cccccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhc----------cCCCCCCEEECC
Confidence 99887643 334889999999999884445444 478999999999999876554444 345689999999
Q ss_pred cccccccccccccCCCCccEEEccCCcccccCCCCccC------CCCCcEEEccCccccc--CcchhhhcccCCceeecC
Q 042610 242 NDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGN------FSHLHTLSMSNNHLEG--NIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~ 313 (351)
+|.+. .++..+..+++|+.|++++|.+++..+..+.. .++++.+++++|++.. ..|..+..++.++.++++
T Consensus 249 ~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 99887 56677888999999999999998655555543 4789999999999863 567889999999999999
Q ss_pred CCc
Q 042610 314 ENN 316 (351)
Q Consensus 314 ~n~ 316 (351)
+|+
T Consensus 328 ~N~ 330 (330)
T 1xku_A 328 NYK 330 (330)
T ss_dssp ---
T ss_pred ccC
Confidence 884
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2e-28 Score=229.96 Aligned_cols=290 Identities=20% Similarity=0.239 Sum_probs=241.6
Q ss_pred CCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccce
Q 042610 27 NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQL 106 (351)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 106 (351)
.+.+++.++++++.+....+..+..+++|++|++++|.+.+. ....+..+++|+.+++.++.. .......+..+++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC--ChHHhcCCCCCCEEECCCCcC-CCCCHHHHcCCCCC
Confidence 367899999999999877777789999999999999988742 233677899999999998763 33455567888999
Q ss_pred eEEEcCCCCCCcCCch-hhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCc
Q 042610 107 KVLSLPNCNLGAIPNF-LLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNS 185 (351)
Q Consensus 107 ~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~ 185 (351)
++|++++|.+..+|.. +..+++|+.|++++|.+. .++...+..+++|+.|++++|.+... ....+++|+.|++++|.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCc
Confidence 9999999999888765 588999999999999998 45544467899999999999999886 45678999999999998
Q ss_pred cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEcc
Q 042610 186 FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDIS 265 (351)
Q Consensus 186 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (351)
+. .++ .+++|+.|++++|.+.. ++.. ..++|+.|++++|.+.+. ..+..+++|+.|+++
T Consensus 204 l~-~l~-----~~~~L~~L~ls~n~l~~-~~~~------------~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 204 LS-TLA-----IPIAVEELDASHNSINV-VRGP------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLS 262 (597)
T ss_dssp CS-EEE-----CCTTCSEEECCSSCCCE-EECS------------CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cc-ccc-----CCchhheeeccCCcccc-cccc------------cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECC
Confidence 86 221 46789999999998763 2211 125799999999998874 567889999999999
Q ss_pred CCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCcccccc
Q 042610 266 NNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGDR 343 (351)
Q Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 343 (351)
+|.+.+..|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+...+.....+++|++|++++|++++.
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 999998889999999999999999999984 67777789999999999999996554444899999999999998643
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.7e-27 Score=224.30 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=113.6
Q ss_pred cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccch---------------hhhcCccccc
Q 042610 172 AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL---------------ATYMNMTQLW 236 (351)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~---------------~~~~~~~~L~ 236 (351)
.++.|+.+++..+......+...+..+++++.++++.|.+.+..+..+..++.+. ..+..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 3455666666655554334444444566777777777766654444443333222 2456678999
Q ss_pred eeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcc-cCCceeecCCC
Q 042610 237 ALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNL-AGLYIPDISEN 315 (351)
Q Consensus 237 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n 315 (351)
.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|..+..+ ++|+.|++++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999888899999999999999999997778889999999999999999998899999888 68999999999
Q ss_pred cccc
Q 042610 316 NLSG 319 (351)
Q Consensus 316 ~~~~ 319 (351)
++.-
T Consensus 578 p~~C 581 (635)
T 4g8a_A 578 DFAC 581 (635)
T ss_dssp CBCC
T ss_pred CCcc
Confidence 8864
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.7e-28 Score=209.97 Aligned_cols=288 Identities=16% Similarity=0.190 Sum_probs=226.0
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
++++++++++.++ .+|..+ .+++++|++++|++.+..+.+|.++++|++|++++|.+.. .....+..+++|+.++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK--IHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc--cCHhHhhCcCCCCEEE
Confidence 6889999999887 666655 3689999999999987777789999999999999998864 2234677889999999
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCC-CcChhhhhcCccceEEEecCCc
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAG-NFPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 163 (351)
+.++.... .+.. +. .+|++|++++|.+..++. .+..+++|+.+++++|.+.. ......+..+ +|+.|++++|.
T Consensus 109 L~~n~l~~-l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLVE-IPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCCS-CCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCCc-cCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 98776432 2211 22 689999999999988865 58889999999999998852 1333334455 99999999999
Q ss_pred cccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccc
Q 042610 164 FSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHND 243 (351)
Q Consensus 164 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 243 (351)
+..++. ...+.|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 184 l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~----------~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 184 LTGIPK-DLPETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGSL----------SFLPTLRELHLDNN 251 (332)
T ss_dssp CSSCCS-SSCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTGG----------GGCTTCCEEECCSS
T ss_pred CCccCc-cccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCCcCChhHh----------hCCCCCCEEECCCC
Confidence 988643 344899999999999984333444 479999999999999986554444 45568999999999
Q ss_pred cccccccccccCCCCccEEEccCCcccccCCCCccC------CCCCcEEEccCcccc--cCcchhhhcccCCceeecCCC
Q 042610 244 NFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGN------FSHLHTLSMSNNHLE--GNIPVQCQNLAGLYIPDISEN 315 (351)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n 315 (351)
.+. .++..+..+++|+.|++++|.+++..+..+.. ..+|+.|++++|++. +..|..+..++.|+.+++++|
T Consensus 252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 987 56677889999999999999998665555544 467999999999987 667888999999999999988
Q ss_pred c
Q 042610 316 N 316 (351)
Q Consensus 316 ~ 316 (351)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 5
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=4.9e-28 Score=219.27 Aligned_cols=244 Identities=23% Similarity=0.292 Sum_probs=130.3
Q ss_pred ccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEE
Q 042610 79 SKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLY 158 (351)
Q Consensus 79 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 158 (351)
++|+.+++.++.... .+ .+..+++|++|++++|.+..+|... .+|+.+++++|.+. .+|. +..+++|+.|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~-~l~~--~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE-ELPE--LQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC-cCcc--ccCCCCCCEEE
Confidence 456666666554332 22 3666667777777777776665432 36777777777766 3553 46677777777
Q ss_pred ecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchh-------hhcC
Q 042610 159 LVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLA-------TYMN 231 (351)
Q Consensus 159 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-------~~~~ 231 (351)
+++|.+..++. ..++|+.|++++|.+. .+|. + ..+++|+.|++++|.+.+ +|.....++.+.- .-..
T Consensus 202 l~~N~l~~l~~--~~~~L~~L~l~~n~l~-~lp~-~-~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 202 ADNNSLKKLPD--LPLSLESIVAGNNILE-ELPE-L-QNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp CCSSCCSSCCC--CCTTCCEEECCSSCCS-SCCC-C-TTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC
T ss_pred CCCCcCCcCCC--CcCcccEEECcCCcCC-cccc-c-CCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc
Confidence 77777765432 2357777777777776 6664 3 367777777777777663 3332222222210 0011
Q ss_pred ccccceeeeccccccc--cccccc-------------cCC-CCccEEEccCCcccccCCCCccCCCCCcEEEccCccccc
Q 042610 232 MTQLWALYLHNDNFSR--KIKDGL-------------LRS-TELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEG 295 (351)
Q Consensus 232 ~~~L~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 295 (351)
+++|+.|++++|.+.+ ..+..+ ..+ ++|+.|++++|.+.+ +|.. +++|++|++++|.++
T Consensus 276 ~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA- 350 (454)
T ss_dssp CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-
T ss_pred cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-
Confidence 2445566666555443 111110 111 356667777666663 4432 467777777777777
Q ss_pred CcchhhhcccCCceeecCCCcccc--cccccc-cc-------------CcccEEEccCccccc--ccc
Q 042610 296 NIPVQCQNLAGLYIPDISENNLSG--SMISTL-NL-------------SSVACLYLQNNALGD--RFV 345 (351)
Q Consensus 296 ~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~-~~-------------~~L~~l~l~~n~~~~--~~p 345 (351)
.+|. .+++|++|++++|.+.+ ..|..+ .+ ++|++|++++|++++ .+|
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 4454 36778888888887776 344433 34 678888888888776 555
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.3e-30 Score=237.81 Aligned_cols=333 Identities=20% Similarity=0.184 Sum_probs=191.6
Q ss_pred CCCccEEEccCccccc----cCCccccCCCCCcEEEccCCcCCCCCchhhc-cCC----CCCeEEeecccccCCC--cch
Q 042610 4 LKNLFELNFGGNKFEG----HLPQCLNNLTHLKVLDVSSNKLSGILPSVIA-NLT----SLEYLALYDNRFKGRL--FSF 72 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~----~L~~L~l~~~~~~~~~--~~~ 72 (351)
+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+. .++ +|++|++++|.+.... ...
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 4566666666666643 2344555666677777776666543332222 233 5777777666654211 112
Q ss_pred hhhcccccccccccccccccceeeec-----CcCCccceeEEEcCCCCCCc-----CCchhhcCCCceEEEccCcccCCC
Q 042610 73 YSLANLSKFEAFQLSMETDLLQVEIE-----NCLPTFQLKVLSLPNCNLGA-----IPNFLLLQFNLKYLDLSHNKLAGN 142 (351)
Q Consensus 73 ~~l~~l~~L~~l~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~ 142 (351)
..+..+++|+.+++.++.... .... ......+|++|++++|.+.. ++..+..+++|+.|++++|.+...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCcCch-HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 345556666777666654221 1111 11223457777777776632 344555566777777777665522
Q ss_pred cChhhhh----cCccceEEEecCCcccccc------ccccccCCcEEEeeCCccccccC----chhhhcCCCceEEEeec
Q 042610 143 FPTWLLE----NNTKLELLYLVNNSFSGFQ------LTSAQHGLLSLDISSNSFTGELP----QNMDIVLPKLVYMNVSK 208 (351)
Q Consensus 143 ~~~~~~~----~~~~L~~L~l~~~~l~~~~------~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~ 208 (351)
.+..+.. ..++|+.|++++|.+.... ....++.|++|++++|.+.+... ..+...+++|+.|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 2222211 2446777777777666532 11245677777777776653221 22222356777777777
Q ss_pred CccccCCCCCccccccchhhhcCccccceeeeccccccccccccccC-----CCCccEEEccCCccccc----CCCCccC
Q 042610 209 NSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLR-----STELEDLDISNNILSGH----IPSWMGN 279 (351)
Q Consensus 209 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~----~~~~~~~ 279 (351)
|.+++. ....+...+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+++. ++..+..
T Consensus 266 n~l~~~------~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 266 CGITAK------GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp SCCCHH------HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred CCCCHH------HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 766531 11122234455677888888887766543332222 25788888888877643 3445566
Q ss_pred CCCCcEEEccCcccccCcchhhhc-----ccCCceeecCCCcccc----cccccc-ccCcccEEEccCcccccc
Q 042610 280 FSHLHTLSMSNNHLEGNIPVQCQN-----LAGLYIPDISENNLSG----SMISTL-NLSSVACLYLQNNALGDR 343 (351)
Q Consensus 280 l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~~-~~~~L~~l~l~~n~~~~~ 343 (351)
+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ ..+..+ .+++|++|++++|++++.
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 788888888888777655544432 5688888888888775 344444 678888888888887654
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=6.6e-28 Score=218.43 Aligned_cols=310 Identities=20% Similarity=0.160 Sum_probs=152.5
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCC-------------CCeEEeecccccCCCcc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTS-------------LEYLALYDNRFKGRLFS 71 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~~ 71 (351)
+.|++|+++++.+ +.+|..++++++|++|++++|++.+..|..+.++++ +++|++++|.+++.+..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4556666666666 355655666666666666666555555555554443 25555555544432211
Q ss_pred hhhh--------------cccccccccccccccccceeeecCcCCc-cceeEEEcCCCCCCcCCchhhcCCCceEEEccC
Q 042610 72 FYSL--------------ANLSKFEAFQLSMETDLLQVEIENCLPT-FQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSH 136 (351)
Q Consensus 72 ~~~l--------------~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 136 (351)
...+ ..+++|+.+++.++.... +... .+|++|++++|.+..+| .+..+++|+.+++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~------l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC------CCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc------ccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 0000 012445555554433211 1111 36666666666666666 366666677777766
Q ss_pred cccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCC
Q 042610 137 NKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIP 216 (351)
Q Consensus 137 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 216 (351)
|.+. .+|.. .++|+.|++++|.+..++....+++|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|
T Consensus 163 N~l~-~lp~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 163 NSLK-KLPDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp SCCS-CCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC
T ss_pred CcCc-ccCCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc
Confidence 6665 34432 3466777777766666554456666777777777666 34432 346777777777665 444
Q ss_pred CCccccccchh---------h-hcCccccceeeeccccccccccccccCCCCccEEEccCCcccc--cCCCCc-------
Q 042610 217 SSIGKMQGLLA---------T-YMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSG--HIPSWM------- 277 (351)
Q Consensus 217 ~~~~~~~~l~~---------~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~------- 277 (351)
. +..++++.. . -..+++|+.|++++|.+.+ ++. .+++|+.|++++|.+++ ..|..+
T Consensus 232 ~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~ 306 (454)
T 1jl5_A 232 E-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred c-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcC
Confidence 2 333332220 0 0112344555555544443 111 12456666666665553 122111
Q ss_pred ------cCC-CCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCccccc--ccc
Q 042610 278 ------GNF-SHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGD--RFV 345 (351)
Q Consensus 278 ------~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~p 345 (351)
..+ ++|++|++++|.+.+ +|.. +++|+.|++++|.++..+. .+++|++|++++|++++ .+|
T Consensus 307 N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 307 NEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp SCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred CcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCCh
Confidence 111 356666666666663 4432 4677888888887775433 36788888888888877 454
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=208.04 Aligned_cols=277 Identities=19% Similarity=0.201 Sum_probs=166.7
Q ss_pred CCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCcccee
Q 042610 28 LTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLK 107 (351)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 107 (351)
|+.....+.++++++ .+|..+. ++|++|++++|.++..+. ..+..+++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~---------------------------~~~~~l~~L~ 79 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN---------------------------SDLQRCVNLQ 79 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT---------------------------TTTTTCTTCC
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH---------------------------HHhccCCCCC
Confidence 444445566666655 3343332 466666666665542111 1122333555
Q ss_pred EEEcCCCCCCcC-CchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc---cccccCCcEEEeeC
Q 042610 108 VLSLPNCNLGAI-PNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL---TSAQHGLLSLDISS 183 (351)
Q Consensus 108 ~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~ 183 (351)
.|++++|.+..+ +..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+..++. ...+++|+.|++++
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred EEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence 555555555444 234555566666666666665 4555444556666666666666665543 23556666666666
Q ss_pred Cc-cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEE
Q 042610 184 NS-FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDL 262 (351)
Q Consensus 184 ~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 262 (351)
|. +. .++...+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+.......+..+++|+.|
T Consensus 159 n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 159 MDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLK----------SIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp SSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTT----------TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred Ccccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHh----------ccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 63 33 44333334677777777777777655454433 34467777777777654433334456778888
Q ss_pred EccCCcccccCCCCc---cCCCCCcEEEccCccccc----CcchhhhcccCCceeecCCCcccccccccc-ccCcccEEE
Q 042610 263 DISNNILSGHIPSWM---GNFSHLHTLSMSNNHLEG----NIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLY 334 (351)
Q Consensus 263 ~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~ 334 (351)
++++|.+++..+..+ .....++.+++.++.+.+ .+|..+..+++|+.|++++|+++..+...+ .+++|++|+
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence 888887764433322 235667777777777664 366677888888888888888886666555 788888888
Q ss_pred ccCccccccccc
Q 042610 335 LQNNALGDRFVK 346 (351)
Q Consensus 335 l~~n~~~~~~p~ 346 (351)
+++|++.+..|.
T Consensus 308 L~~N~~~~~~~~ 319 (353)
T 2z80_A 308 LHTNPWDCSCPR 319 (353)
T ss_dssp CCSSCBCCCHHH
T ss_pred eeCCCccCcCCC
Confidence 888888777663
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3.7e-27 Score=203.66 Aligned_cols=231 Identities=25% Similarity=0.373 Sum_probs=203.4
Q ss_pred cceeEEEcCCCCCC---cCCchhhcCCCceEEEccC-cccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCc
Q 042610 104 FQLKVLSLPNCNLG---AIPNFLLLQFNLKYLDLSH-NKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLL 177 (351)
Q Consensus 104 ~~L~~L~l~~~~~~---~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~ 177 (351)
.+++.|+++++.+. .+|..+..+++|+.|++++ |.+.+.+|..+ ..+++|++|++++|.+..... ...+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 47999999999995 6899999999999999995 88887788764 789999999999999984332 35789999
Q ss_pred EEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCC
Q 042610 178 SLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRST 257 (351)
Q Consensus 178 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 257 (351)
+|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..+..+. +.|+.|++++|.+.+..+..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~---------~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFS---------KLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCC---------TTCCEEECCSSEEEEECCGGGGGCC
T ss_pred EEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhh---------hcCcEEECcCCeeeccCChHHhCCc
Confidence 999999999978887776 799999999999999887876654432 2799999999999988888888887
Q ss_pred CccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEcc
Q 042610 258 ELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQ 336 (351)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~ 336 (351)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..+..+ .+++|++|+++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 99999999999988888999999999999999999866665 7889999999999999998888777 89999999999
Q ss_pred Ccccccccccc
Q 042610 337 NNALGDRFVKL 347 (351)
Q Consensus 337 ~n~~~~~~p~~ 347 (351)
+|+++|.+|..
T Consensus 277 ~N~l~~~ip~~ 287 (313)
T 1ogq_A 277 FNNLCGEIPQG 287 (313)
T ss_dssp SSEEEEECCCS
T ss_pred CCcccccCCCC
Confidence 99999999874
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.6e-26 Score=198.67 Aligned_cols=235 Identities=15% Similarity=0.110 Sum_probs=163.5
Q ss_pred CCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCcccee
Q 042610 28 LTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLK 107 (351)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 107 (351)
.++++.|++++++++ .+|..+.++++|++|++++|.+...+. .+..+++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~----------------------------~~~~l~~L~ 130 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPD----------------------------TMQQFAGLE 130 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCS----------------------------CGGGGTTCS
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhH----------------------------HHhccCCCC
Confidence 478888888888887 566667788888888888887653221 122334677
Q ss_pred EEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccc
Q 042610 108 VLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFT 187 (351)
Q Consensus 108 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 187 (351)
+|++++|.+..+|..+..+++|+.|++++|+..+.+|..+.. ..+. .....+++|+.|++++|.+.
T Consensus 131 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-------~~~~-------~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS-------TDAS-------GEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE-------EC-C-------CCEEESTTCCEEEEEEECCC
T ss_pred EEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhh-------ccch-------hhhccCCCCCEEECcCCCcC
Confidence 777777777778888888888888888888777677654311 1000 11234566667777776666
Q ss_pred cccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCC
Q 042610 188 GELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNN 267 (351)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (351)
.+|..+. .+++|+.|++++|.+. .+|.. +..+++|++|++++|.+.+.++..+..+++|+.|++++|
T Consensus 197 -~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~----------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 197 -SLPASIA-NLQNLKSLKIRNSPLS-ALGPA----------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp -CCCGGGG-GCTTCCEEEEESSCCC-CCCGG----------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred -cchHhhc-CCCCCCEEEccCCCCC-cCchh----------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 6666654 6788888888888776 34332 234456777777777777777777777777888888777
Q ss_pred cccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 268 ILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777888888887777777777777777777777766444
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=5e-29 Score=227.34 Aligned_cols=330 Identities=18% Similarity=0.149 Sum_probs=242.0
Q ss_pred CCCccEEEccCccccccCCc-cccCCCCCcEEEccCCcCCCC----CchhhccCCCCCeEEeecccccCCCcchhh-hcc
Q 042610 4 LKNLFELNFGGNKFEGHLPQ-CLNNLTHLKVLDVSSNKLSGI----LPSVIANLTSLEYLALYDNRFKGRLFSFYS-LAN 77 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l~~ 77 (351)
.+++++|+++++.+++.... .+..+++|++|++++|++.+. ++..+..+++|++|++++|.+.. ..... ...
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH--HHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh--HHHHHHHHH
Confidence 36789999999998754333 377899999999999998743 45667788999999999998753 11222 233
Q ss_pred cc----cccccccccccccce---eeecCcCCccceeEEEcCCCCCCcC-Cchhh-----cCCCceEEEccCcccCCCcC
Q 042610 78 LS----KFEAFQLSMETDLLQ---VEIENCLPTFQLKVLSLPNCNLGAI-PNFLL-----LQFNLKYLDLSHNKLAGNFP 144 (351)
Q Consensus 78 l~----~L~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-----~~~~L~~l~l~~~~~~~~~~ 144 (351)
++ +|+.+++.++..... .....+..+++|++|++++|.+... +..+. ..++|+.|++++|.+.+...
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 699999998763321 1234567888999999999998431 22222 24579999999998874332
Q ss_pred h---hhhhcCccceEEEecCCccccccccc-------cccCCcEEEeeCCccccc----cCchhhhcCCCceEEEeecCc
Q 042610 145 T---WLLENNTKLELLYLVNNSFSGFQLTS-------AQHGLLSLDISSNSFTGE----LPQNMDIVLPKLVYMNVSKNS 210 (351)
Q Consensus 145 ~---~~~~~~~~L~~L~l~~~~l~~~~~~~-------~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 210 (351)
. ..+..+++|+.|++++|.+....... ..+.|++|++++|.+.+. ++..+. .+++|+.|++++|.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSB
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCc
Confidence 2 23456899999999999987643222 245999999999998743 344443 78999999999998
Q ss_pred cccCCCCCccccccchh-hhcCccccceeeecccccccc----ccccccCCCCccEEEccCCcccccCCCCcc-----CC
Q 042610 211 FEGNIPSSIGKMQGLLA-TYMNMTQLWALYLHNDNFSRK----IKDGLLRSTELEDLDISNNILSGHIPSWMG-----NF 280 (351)
Q Consensus 211 ~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l 280 (351)
+.+.. ...+.. ....+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..
T Consensus 239 l~~~~------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 239 LGDVG------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312 (461)
T ss_dssp CHHHH------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred CChHH------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence 76421 111111 223578999999999988875 455566789999999999988754333222 34
Q ss_pred CCCcEEEccCcccccC----cchhhhcccCCceeecCCCcccccccccc-c-----cCcccEEEccCccccc
Q 042610 281 SHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDISENNLSGSMISTL-N-----LSSVACLYLQNNALGD 342 (351)
Q Consensus 281 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~-----~~~L~~l~l~~n~~~~ 342 (351)
++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+ . .++|++|++++|++++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 6999999999999865 56667888999999999999987655444 1 6799999999999986
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2e-26 Score=198.76 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=165.5
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccc
Q 042610 8 FELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLS 87 (351)
Q Consensus 8 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 87 (351)
+.++.+++.++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+........
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------- 72 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-------------- 72 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH--------------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc--------------
Confidence 56788888777 5665443 689999999999986666668899999999999987652110001
Q ss_pred cccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcCh-hhhhcCccceEEEecCCcccc
Q 042610 88 METDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPT-WLLENNTKLELLYLVNNSFSG 166 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~ 166 (351)
.+..+.+|++|++++|.+..+|..+..+++|+.|++++|.+. .++. ..+..+++|+.|++++|.+..
T Consensus 73 -----------~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 73 -----------SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp -----------HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred -----------ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCc
Confidence 112334777888888888777777778888888888888877 3433 345677888888888887765
Q ss_pred ccc--cccccCCcEEEeeCCcccc-ccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccc
Q 042610 167 FQL--TSAQHGLLSLDISSNSFTG-ELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHND 243 (351)
Q Consensus 167 ~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 243 (351)
... ...+++|++|++++|.+.+ ..|..+. .+++|+.|++++|.+.+..|..+. .+++|++|++++|
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~----------~l~~L~~L~L~~N 209 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFN----------SLSSLQVLNMSHN 209 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTT----------TCTTCCEEECTTS
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhc----------CCCCCCEEECCCC
Confidence 432 2355677777777776664 2444433 667777777777776654443332 3446667777776
Q ss_pred cccccccccccCCCCccEEEccCCcccccCCCCccCCC-CCcEEEccCccccc
Q 042610 244 NFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFS-HLHTLSMSNNHLEG 295 (351)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~ 295 (351)
.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|++..
T Consensus 210 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 66655555566666677777777766666666666653 66777777766653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=200.03 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=107.3
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
|+.....+.+++.++ .+|..+. ++|++|++++|++++..+.++.++++|++|++++|.+.+.. ...+..+++|+.
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--EDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC--HhhcCCCCCCCE
Confidence 344455667777776 5555443 47888888888877666667778888888888887765311 123344444444
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcCCc--hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecC
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN--FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (351)
+++.++... ......+..+++|++|++++|.+..+|. .+..+++|+.+++++|...+.++...+..+++|+.|++++
T Consensus 105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 444433221 1111123344455555555555555544 4455555555555555322233333344555555555555
Q ss_pred Cccccccc--cccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCcccc
Q 042610 162 NSFSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEG 213 (351)
Q Consensus 162 ~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 213 (351)
|.+..... ...+++|++|++++|.+. .++..+...+++|+.|++++|.+.+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence 55544321 124445555555555554 4444433345555555555555543
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-25 Score=193.64 Aligned_cols=224 Identities=19% Similarity=0.237 Sum_probs=196.6
Q ss_pred cceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc-cccccCCcEEEee
Q 042610 104 FQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL-TSAQHGLLSLDIS 182 (351)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~ 182 (351)
..++.|+++++.+..+|..+..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+..++. ...+++|+.|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 5789999999999999999999999999999999998 888764 789999999999999986643 3478899999999
Q ss_pred CCccccccCchhh--------hcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccccccc
Q 042610 183 SNSFTGELPQNMD--------IVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL 254 (351)
Q Consensus 183 ~~~~~~~~~~~~~--------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 254 (351)
+|...+.+|..+. ..+++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+ ++..+.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l----------~~l~~L~~L~L~~N~l~~-l~~~l~ 226 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI----------ANLQNLKSLKIRNSPLSA-LGPAIH 226 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG----------GGCTTCCEEEEESSCCCC-CCGGGG
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh----------cCCCCCCEEEccCCCCCc-Cchhhc
Confidence 9888778887664 24899999999999887 666544 455689999999999885 455688
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEE
Q 042610 255 RSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACL 333 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l 333 (351)
.+++|+.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+ .+++++.+
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 89999999999999998999999999999999999999999999999999999999999999999888877 99999999
Q ss_pred EccCcccc
Q 042610 334 YLQNNALG 341 (351)
Q Consensus 334 ~l~~n~~~ 341 (351)
++..+.+.
T Consensus 307 ~l~~~~~~ 314 (328)
T 4fcg_A 307 LVPPHLQA 314 (328)
T ss_dssp ECCGGGSC
T ss_pred eCCHHHHH
Confidence 99977653
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.8e-25 Score=190.10 Aligned_cols=226 Identities=23% Similarity=0.227 Sum_probs=188.8
Q ss_pred ceeEEEcCCCCCCcCCch-hhcCCCceEEEccCcccCCCc---ChhhhhcCccceEEEecCCccccccc-cccccCCcEE
Q 042610 105 QLKVLSLPNCNLGAIPNF-LLLQFNLKYLDLSHNKLAGNF---PTWLLENNTKLELLYLVNNSFSGFQL-TSAQHGLLSL 179 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L 179 (351)
.++.|+++++.+..+|.. +..+++|+.|++++|.+. .. +.. +..+++|+.|++++|.+..++. ...+++|++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 788999999999888764 688899999999999886 33 344 3568999999999999887654 3478899999
Q ss_pred EeeCCccccccCc-hhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccc-cccccccCCC
Q 042610 180 DISSNSFTGELPQ-NMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSR-KIKDGLLRST 257 (351)
Q Consensus 180 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~ 257 (351)
++++|.+. .++. ..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+ ..+..+..++
T Consensus 107 ~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 107 DFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----------NGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp ECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTT----------TTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhc----------ccCcCCCEEECCCCccccccchhHHhhCc
Confidence 99999988 4443 344578999999999998876555444 355689999999999877 5677888999
Q ss_pred CccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-cc-CcccEEEc
Q 042610 258 ELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NL-SSVACLYL 335 (351)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~l~l 335 (351)
+|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ .+ ++|++|++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 99999999999997778889999999999999999997777788999999999999999998888777 66 49999999
Q ss_pred cCcccccc
Q 042610 336 QNNALGDR 343 (351)
Q Consensus 336 ~~n~~~~~ 343 (351)
++|++++.
T Consensus 256 ~~N~~~~~ 263 (306)
T 2z66_A 256 TQNDFACT 263 (306)
T ss_dssp TTCCEECS
T ss_pred cCCCeecc
Confidence 99998754
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-24 Score=202.17 Aligned_cols=262 Identities=23% Similarity=0.317 Sum_probs=161.5
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
++++|+++++.++ .+|..+. ++|++|++++|+++. +|. .+++|++|++++|.++..+. .+++|+.++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC------CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC------CCCCCCEEE
Confidence 5789999999988 6776665 799999999999884 443 57899999999998764322 456666666
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
+..+....... .+.+|+.|++++|++..+|.. +++|+.|++++|.+. .+|. .+++|+.|++++|.+.
T Consensus 108 Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 108 IFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp ECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred CcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence 66554222111 334666666666666666553 256666666666665 4442 2456666666666666
Q ss_pred cccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccc
Q 042610 166 GFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNF 245 (351)
Q Consensus 166 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 245 (351)
.++ ..+++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+|.. +++|+.|++++|.+
T Consensus 175 ~l~--~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~-------------~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 175 SLP--MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL-------------PSGLKELIVSGNRL 233 (622)
T ss_dssp CCC--CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC-------------CTTCCEEECCSSCC
T ss_pred CCc--ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC-------------CCCCCEEEccCCcc
Confidence 554 44566666666666665 3443 2456666666666654 23221 13566666666655
Q ss_pred cccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccc
Q 042610 246 SRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMIS 323 (351)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 323 (351)
.+ ++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+.
T Consensus 234 ~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 234 TS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred Cc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 54 22 33456666666666665 4443 4456666666666666 5566666666666666666666654444
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=6.3e-25 Score=199.53 Aligned_cols=200 Identities=20% Similarity=0.185 Sum_probs=101.2
Q ss_pred ceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEe
Q 042610 105 QLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDI 181 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l 181 (351)
+|+.|++++|.+..++ ..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+..++. ...+++|+.|++
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 3334444444433322 33444444444444444444 3333333444444444444444443322 123444455555
Q ss_pred eCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccE
Q 042610 182 SSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELED 261 (351)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 261 (351)
+++...+.++...+..+++|+.|++++|.+.+ +|. +..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-----------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-----------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-----------ccccccccEEECcCCcCcccCcccccCccCCCE
Confidence 44332224444444455666666666665542 221 223445666666666665555555666666666
Q ss_pred EEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcc
Q 042610 262 LDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNL 317 (351)
Q Consensus 262 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 317 (351)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 66666666655555566666666666666666644445555666666666666654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=8.8e-25 Score=197.90 Aligned_cols=200 Identities=20% Similarity=0.188 Sum_probs=94.9
Q ss_pred ceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEe
Q 042610 105 QLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDI 181 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l 181 (351)
+|++|++++|.+..++ ..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+..++. ...+++|+.|++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 3344444444443332 23344444444444444444 3333333344444444444444443322 123444444444
Q ss_pred eCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccE
Q 042610 182 SSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELED 261 (351)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 261 (351)
+++...+.++...+..+++|+.|++++|.+. .+|. +..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-----------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-----------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-----------cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 4433222444433334555555555555544 2221 223345555555555555554555555555555
Q ss_pred EEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcc
Q 042610 262 LDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNL 317 (351)
Q Consensus 262 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 317 (351)
|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 55555555555555555555555555555555544444455555555555555543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=7.6e-25 Score=186.87 Aligned_cols=224 Identities=17% Similarity=0.163 Sum_probs=119.3
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccc
Q 042610 8 FELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLS 87 (351)
Q Consensus 8 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 87 (351)
++++.+++.++ .+|..+ .+++++|+++++++++..+..|.++++|++|++++|.+....
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------ 72 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID------------------ 72 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC------------------
Confidence 45666666665 444322 357777777777777655566777777777777777654210
Q ss_pred cccccceeeecCcCCccceeEEEcCCCC-CCcC-CchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 88 METDLLQVEIENCLPTFQLKVLSLPNCN-LGAI-PNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
...+..+++|++|++++|. +..+ +..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 73 ---------~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 73 ---------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp ---------TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCccc
Confidence 1122333355555555554 4444 344555555666666555555 232222344555555555555444
Q ss_pred cccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccc
Q 042610 166 GFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNF 245 (351)
Q Consensus 166 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 245 (351)
. ++...+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+
T Consensus 143 ~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 143 A-----------------------LPDDTFRDLGNLTHLFLHGNRISSVPERA----------FRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp C-----------------------CCTTTTTTCTTCCEEECCSSCCCEECTTT----------TTTCTTCCEEECCSSCC
T ss_pred c-----------------------cCHhHhccCCCccEEECCCCcccccCHHH----------hcCccccCEEECCCCcc
Confidence 3 23222234555666666655554222211 12233455555555555
Q ss_pred cccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCccccc
Q 042610 246 SRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEG 295 (351)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 295 (351)
.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 54445555566666666666666664433445666666666666666653
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.4e-24 Score=183.74 Aligned_cols=220 Identities=20% Similarity=0.225 Sum_probs=114.8
Q ss_pred EEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEeeCCc
Q 042610 108 VLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDISSNS 185 (351)
Q Consensus 108 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~ 185 (351)
.++.++..+..+|..+ .++++.|++++|.+. .++...+..+++|+.|++++|.+..+.. ...++.|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4444455555554432 235555555555554 3433334455555555555555554422 2244555555555554
Q ss_pred -cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEc
Q 042610 186 -FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDI 264 (351)
Q Consensus 186 -~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 264 (351)
+. .++...+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLF----------RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTT----------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred Ccc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHh----------hCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 33 3322222345566666666555553333222 23345556666665555444444555556666666
Q ss_pred cCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcccc
Q 042610 265 SNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALG 341 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~ 341 (351)
++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.++..+ .+++|++|++++|++.
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6665554444445555666666666666655555555556666666666666655444444 5566666666666554
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.4e-26 Score=217.71 Aligned_cols=328 Identities=16% Similarity=0.112 Sum_probs=197.9
Q ss_pred CCCCccEEEccCccccccC----CccccCCCCCcEEEccCCcCCCC----CchhhccCCCCCeEEeecccccCCCcchhh
Q 042610 3 ELKNLFELNFGGNKFEGHL----PQCLNNLTHLKVLDVSSNKLSGI----LPSVIANLTSLEYLALYDNRFKGRLFSFYS 74 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 74 (351)
++++|++|++++|.+.+.. +....++++|++|+++++.+++. ++..+.++++|++|++++|.+.+. ...
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l---~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL---VGF 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG---HHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH---HHH
Confidence 4567777777777665432 22334567777777777766522 233345677777777777765531 134
Q ss_pred hcccccccccccccccccc--eeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCc
Q 042610 75 LANLSKFEAFQLSMETDLL--QVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNT 152 (351)
Q Consensus 75 l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 152 (351)
+..+++|+.+.+....... ......+..+++|+.+++.++....+|..+..+++|+.|++++|.+.+.....++..++
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 5556677776665321110 11223456667788888877666677777777888888888888765333334456788
Q ss_pred cceEEEecCCcccccccc---ccccCCcEEEeeC-----------CccccccCchhhhcCCCceEEEeecCccccCCCCC
Q 042610 153 KLELLYLVNNSFSGFQLT---SAQHGLLSLDISS-----------NSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSS 218 (351)
Q Consensus 153 ~L~~L~l~~~~l~~~~~~---~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 218 (351)
+|+.|++. +.+...... ..+++|++|++++ +.+.+.....+...+++|++|++..+.+++..+..
T Consensus 319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 88888887 333332111 2567788888883 34443323333345788888888766665422221
Q ss_pred ccccccchhhhcCccccceeeec----ccccccc-----ccccccCCCCccEEEccCCc--ccccCCCCc-cCCCCCcEE
Q 042610 219 IGKMQGLLATYMNMTQLWALYLH----NDNFSRK-----IKDGLLRSTELEDLDISNNI--LSGHIPSWM-GNFSHLHTL 286 (351)
Q Consensus 219 ~~~~~~l~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L 286 (351)
+ ...+++|++|+++ .+.+++. ++..+..+++|+.|+++.|. +++..+..+ ..+++|++|
T Consensus 398 l---------~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 398 I---------GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp H---------HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred H---------HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 1 1235677788775 3344432 22234557778888886543 443332223 346778888
Q ss_pred EccCcccccC-cchhhhcccCCceeecCCCcccccccccc--ccCcccEEEccCcccccc
Q 042610 287 SMSNNHLEGN-IPVQCQNLAGLYIPDISENNLSGSMISTL--NLSSVACLYLQNNALGDR 343 (351)
Q Consensus 287 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--~~~~L~~l~l~~n~~~~~ 343 (351)
++++|.+++. ++..+..+++|++|++++|.+++.....+ .+++|++|++++|++++.
T Consensus 469 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 8888877653 34455677888888888887765433322 678888888888877654
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4.8e-26 Score=197.20 Aligned_cols=265 Identities=18% Similarity=0.161 Sum_probs=182.7
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccccc
Q 042610 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQL 86 (351)
Q Consensus 7 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l 86 (351)
++..+++.+.+.......+..+++|++|++++|++++..+..+.++++|++|++++|.+.+.. .+..+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~l-------- 79 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----DLESL-------- 79 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE----EETTC--------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch----hhhhc--------
Confidence 445556666665444455566789999999999999888888999999999999999875311 13333
Q ss_pred ccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccc
Q 042610 87 SMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG 166 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 166 (351)
++|++|++++|.+..++. .++|+.+++++|.+. .++. ..+++|+.|++++|.+..
T Consensus 80 -----------------~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~-~~~~---~~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 80 -----------------STLRTLDLNNNYVQELLV----GPSIETLHAANNNIS-RVSC---SRGQGKKNIYLANNKITM 134 (317)
T ss_dssp -----------------TTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCS-EEEE---CCCSSCEEEECCSSCCCS
T ss_pred -----------------CCCCEEECcCCccccccC----CCCcCEEECCCCccC-CcCc---cccCCCCEEECCCCCCCC
Confidence 355566666665544432 256666666666665 3332 234666666666666665
Q ss_pred cccc--ccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccc
Q 042610 167 FQLT--SAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDN 244 (351)
Q Consensus 167 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 244 (351)
.... ..+++|+.|++++|.+.+..+..+...+++|+.|++++|.+++. +. ...+++|++|++++|.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-----------~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-----------QVVFAKLKTLDLSSNK 202 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-----------CCCCTTCCEEECCSSC
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-----------ccccccCCEEECCCCc
Confidence 5332 24566777777777666444444444577888888888877632 11 1135678888888887
Q ss_pred ccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccc-cCcchhhhcccCCceeecCCC-ccccccc
Q 042610 245 FSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLE-GNIPVQCQNLAGLYIPDISEN-NLSGSMI 322 (351)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n-~~~~~~~ 322 (351)
+.+.. ..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+..++.|+.+++.++ .+.+..+
T Consensus 203 l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 203 LAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 77543 34778899999999999998 67778889999999999999998 678888889999999999855 3444333
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=2.5e-24 Score=195.57 Aligned_cols=246 Identities=20% Similarity=0.175 Sum_probs=131.0
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccccc
Q 042610 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQL 86 (351)
Q Consensus 7 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l 86 (351)
.+.++.++..++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|.+... ....+..+++|+.+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI--EVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc--ChhhccCcccCCEEEC
Confidence 456777777766 5565443 5788888888888877777888888888888888877532 1223444444444444
Q ss_pred ccccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 87 SMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
.++... ......+..+++|++|++++|.+..++. .+..+++|+.|++++++..+.++...+..+++|+.|++++|.+.
T Consensus 131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 443311 2222234444555555555555544432 44455555555555533333444444445555555555555555
Q ss_pred cccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccc
Q 042610 166 GFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNF 245 (351)
Q Consensus 166 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 245 (351)
.++....+++|+.|++++|.+.+..+.. +..+++|+. |++++|.+
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~----------------------------------L~L~~n~l 254 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSLKK----------------------------------LWVMNSQV 254 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEECGGG-GTTCTTCCE----------------------------------EECTTSCC
T ss_pred ccccccccccccEEECcCCcCcccCccc-ccCccCCCE----------------------------------EEeCCCcC
Confidence 4443344444555555554444222222 224444444 44444444
Q ss_pred cccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCccc
Q 042610 246 SRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHL 293 (351)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 293 (351)
.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 444444444555555555555555533334445555555555555543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=193.87 Aligned_cols=246 Identities=18% Similarity=0.218 Sum_probs=130.2
Q ss_pred ccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccccc
Q 042610 7 LFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQL 86 (351)
Q Consensus 7 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l 86 (351)
.+.++..+..++ .+|..+. ++++.|++++|++.+..+.+|.++++|++|++++|.+.. .....+..+++|+.+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE--ECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc--cChhhccCCccCCEEEC
Confidence 456666776666 5665444 678888888888887777788888888888888887653 22223444444444444
Q ss_pred ccccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccc
Q 042610 87 SMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFS 165 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 165 (351)
.++.. .......+..+++|++|++++|.+..++. .+..+++|+.|++++++..+.++...+..+++|+.|++++|.+.
T Consensus 120 ~~n~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCC-SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcC-CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 43321 11222233444455555555555544432 34444555555555433333444433444555555555555554
Q ss_pred cccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccc
Q 042610 166 GFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNF 245 (351)
Q Consensus 166 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 245 (351)
.++.... +++|+.|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 199 ~~~~~~~-------------------------l~~L~~L~Ls~N~l~~~~~~~~~----------~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 199 EIPNLTP-------------------------LIKLDELDLSGNHLSAIRPGSFQ----------GLMHLQKLWMIQSQI 243 (440)
T ss_dssp SCCCCTT-------------------------CSSCCEEECTTSCCCEECTTTTT----------TCTTCCEEECTTCCC
T ss_pred cccccCC-------------------------CcccCEEECCCCccCccChhhhc----------cCccCCEEECCCCce
Confidence 4443334 44555555555544433332222 233455555555555
Q ss_pred cccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCccc
Q 042610 246 SRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHL 293 (351)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 293 (351)
.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 444444555555555555555555544444455555555555555554
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=6.2e-25 Score=190.18 Aligned_cols=195 Identities=22% Similarity=0.186 Sum_probs=120.7
Q ss_pred CCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
.+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++|.+.+ +...++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-------l~~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-------LLVGPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-------EEECTTCC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-------ccCCCCcC
Confidence 46789999999999997777889999999999999999986544 8899999999999998763 22335556
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecC
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (351)
.+++..+....... ..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+.+..+..+...+++|+.|++++
T Consensus 103 ~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 103 TLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp EEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 66555544322211 12345666666666654442 24455556666666666555333333333455566666666
Q ss_pred CccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccc
Q 042610 162 NSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFE 212 (351)
Q Consensus 162 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 212 (351)
|.+..++....+++|++|++++|.+. .++..+. .+++|+.|++++|.+.
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV 227 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC
T ss_pred CcCcccccccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc
Confidence 65555443334555555555555554 3333322 4455555555555444
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.1e-22 Score=189.99 Aligned_cols=248 Identities=21% Similarity=0.239 Sum_probs=203.2
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|++++|.+...+. .+++|+.+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~------~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA------LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC------CCTTCCEE
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC------CCCCcCEE
Confidence 68999999999998 5665 57899999999999985 443 78999999999999876333 46788888
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcc
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSF 164 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 164 (351)
++..+..... +. .+++|++|++++|.+..+|.. .++|+.|++++|.+. .+| ..+++|+.|++++|.+
T Consensus 127 ~L~~N~l~~l-p~----~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 127 WIFGNQLTSL-PV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQL 193 (622)
T ss_dssp ECCSSCCSCC-CC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCC
T ss_pred ECCCCCCCcC-CC----CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCC
Confidence 8887753321 11 237999999999999888753 468999999999998 677 3579999999999999
Q ss_pred ccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccc
Q 042610 165 SGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDN 244 (351)
Q Consensus 165 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 244 (351)
..++. .+++|+.|++++|.+. .+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.
T Consensus 194 ~~l~~--~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp~-------------~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 194 ASLPT--LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LPV-------------LPSELKELMVSGNR 252 (622)
T ss_dssp SCCCC--CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CCC-------------CCTTCCEEECCSSC
T ss_pred CCCCC--ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CCC-------------CCCcCcEEECCCCC
Confidence 87543 4689999999999998 6664 35899999999998874 442 33689999999998
Q ss_pred ccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhccc
Q 042610 245 FSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLA 305 (351)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 305 (351)
+.. ++. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+..|..+..++
T Consensus 253 L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 253 LTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 874 343 5788999999999999 7888999999999999999999988888776554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.1e-24 Score=195.38 Aligned_cols=236 Identities=18% Similarity=0.152 Sum_probs=167.6
Q ss_pred CCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccce
Q 042610 27 NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQL 106 (351)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 106 (351)
.+++|++|++++|.+++..|.+|..+++|++|++++|.+.+... +..+++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------------l~~l~~L 82 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----------------------------LESLSTL 82 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----------------------------CTTCTTC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----------------------------cccCCCC
Confidence 34589999999999988888888999999999999987753111 2333456
Q ss_pred eEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccccccc--ccccCCcEEEeeCC
Q 042610 107 KVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT--SAQHGLLSLDISSN 184 (351)
Q Consensus 107 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~ 184 (351)
++|++++|.+..++. .++|+.|++++|.+. .++. ..+++|+.|++++|.+...... ..++.|+.|++++|
T Consensus 83 ~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 83 RTLDLNNNYVQELLV----GPSIETLHAANNNIS-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp CEEECCSSEEEEEEE----CTTCCEEECCSSCCC-CEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred CEEEecCCcCCCCCC----CCCcCEEECcCCcCC-CCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 666666666654442 256777777777766 3332 2356677777777777665332 35667777777777
Q ss_pred ccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEc
Q 042610 185 SFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDI 264 (351)
Q Consensus 185 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 264 (351)
.+.+..|..+...+++|+.|++++|.+++. +. ...+++|+.|++++|.+.+..+ .+..+++|+.|++
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-----------~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L 221 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-----------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISL 221 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-----------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEEC
T ss_pred CCCCcChHHHhhhCCcccEEecCCCccccc-cc-----------cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEe
Confidence 776555665554678888888888877643 11 1235678888888888776444 4778888999999
Q ss_pred cCCcccccCCCCccCCCCCcEEEccCcccc-cCcchhhhcccCCceeecC
Q 042610 265 SNNILSGHIPSWMGNFSHLHTLSMSNNHLE-GNIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 313 (351)
++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++.
T Consensus 222 s~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999988 56777888899999999999887 5677778888888888875
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.1e-24 Score=188.26 Aligned_cols=258 Identities=20% Similarity=0.206 Sum_probs=170.8
Q ss_pred ccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCcc
Q 042610 25 LNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTF 104 (351)
Q Consensus 25 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 104 (351)
++..++|+.|+++++.+ ..|..+... |+.|++++|.+............ ......+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~-------------------~~~~~~l~ 95 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFG-------------------ALRVLGIS 95 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHH-------------------HHHHHTTS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHH-------------------HHHhcCcC
Confidence 45667899999999988 456555544 88888888877431111100000 00011233
Q ss_pred ceeEEEcCCCCCC-cCCchh--hcCCCceEEEccCcccCCCcChhhhhcC-----ccceEEEecCCccccccc--ccccc
Q 042610 105 QLKVLSLPNCNLG-AIPNFL--LLQFNLKYLDLSHNKLAGNFPTWLLENN-----TKLELLYLVNNSFSGFQL--TSAQH 174 (351)
Q Consensus 105 ~L~~L~l~~~~~~-~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~--~~~~~ 174 (351)
+|++|++++|.+. .+|..+ ..+++|+.|++++|.+.+. |..+ ..+ ++|++|++++|.+..... ...++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 6667777777764 455544 6667777777777777633 5432 333 677777777777766543 23667
Q ss_pred CCcEEEeeCCccccc--cCchh-hhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccc-
Q 042610 175 GLLSLDISSNSFTGE--LPQNM-DIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIK- 250 (351)
Q Consensus 175 ~L~~L~l~~~~~~~~--~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~- 250 (351)
+|++|++++|++.+. ++..+ +..+++|+.|++++|.+.+ + .... ...+..+++|+.|++++|.+.+..+
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~----~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-P----SGVC--SALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-H----HHHH--HHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-h----HHHH--HHHHhcCCCCCEEECCCCcCCcccch
Confidence 777777777775533 22222 2367888888888887652 1 0100 1223456788888888888877663
Q ss_pred ccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccc
Q 042610 251 DGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSG 319 (351)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 319 (351)
..+..+++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 44556789999999999998 7777666 8899999999999855 55 8889999999999998875
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=9.5e-25 Score=188.58 Aligned_cols=206 Identities=25% Similarity=0.248 Sum_probs=164.6
Q ss_pred cCCCceEEEccCcccCCCcChhhh-hcCccceEEEecCCcccccccc-ccc-----cCCcEEEeeCCccccccCchhhhc
Q 042610 125 LQFNLKYLDLSHNKLAGNFPTWLL-ENNTKLELLYLVNNSFSGFQLT-SAQ-----HGLLSLDISSNSFTGELPQNMDIV 197 (351)
Q Consensus 125 ~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~-~~~-----~~L~~L~l~~~~~~~~~~~~~~~~ 197 (351)
.+++|+.|++++|.+.+.+|..++ ..+++|+.|++++|.+...+.. ..+ ++|++|++++|.+.+..+..+ ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-cc
Confidence 688999999999999877887653 7899999999999999887321 133 899999999999984443454 48
Q ss_pred CCCceEEEeecCccccCC--CCCccccccchhhhcCccccceeeecccccccc---ccccccCCCCccEEEccCCccccc
Q 042610 198 LPKLVYMNVSKNSFEGNI--PSSIGKMQGLLATYMNMTQLWALYLHNDNFSRK---IKDGLLRSTELEDLDISNNILSGH 272 (351)
Q Consensus 198 l~~L~~L~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~ 272 (351)
+++|+.|++++|.+.+.. +..+ .+..+++|++|++++|.+.+. ....+..+++|+.|++++|.+.+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISAL--------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHS--------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred CCCCCEEECCCCCcCcchHHHHHH--------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 999999999999865421 1111 125678999999999998742 223445778999999999999876
Q ss_pred CC-CCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCcccccc
Q 042610 273 IP-SWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGDR 343 (351)
Q Consensus 273 ~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 343 (351)
.| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. +....+++|++|++++|++++.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence 64 45667899999999999998 7777665 8999999999999987 4433899999999999999863
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.3e-23 Score=173.63 Aligned_cols=200 Identities=16% Similarity=0.142 Sum_probs=112.7
Q ss_pred CCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEe
Q 042610 127 FNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNV 206 (351)
Q Consensus 127 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 206 (351)
++|+.++++++.+. .++. +..+++|+.|++++|.+..++....+++|++|++++|.+. .++...+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEEC
Confidence 34444444444433 2222 2334444444444444444333334444555555555444 333333335566666666
Q ss_pred ecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEE
Q 042610 207 SKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTL 286 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 286 (351)
++|.+.+..+..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..++.+++|++|
T Consensus 117 ~~n~l~~~~~~~~----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 117 VENQLQSLPDGVF----------DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TTSCCCCCCTTTT----------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCccCHHHh----------ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 6666553332222 233456666666666655555555666777777777777765555556677777777
Q ss_pred EccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCccccccccc
Q 042610 287 SMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 346 (351)
++++|.+.+..+..+..+++|+.|++++|.+.+ .+++++++++.+|.++|.+|.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBC
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccC
Confidence 777777776666666777777777777776553 255677777777777777663
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.4e-23 Score=187.08 Aligned_cols=221 Identities=20% Similarity=0.170 Sum_probs=176.8
Q ss_pred CccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEE
Q 042610 102 PTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLD 180 (351)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~ 180 (351)
.+++|+.|++++|.+..++ ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++. .++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV---GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE---CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC---CCCcCEEE
Confidence 3458999999999997764 678889999999999999874444 6788999999999998887643 38899999
Q ss_pred eeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccccccc-CCCCc
Q 042610 181 ISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL-RSTEL 259 (351)
Q Consensus 181 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L 259 (351)
+++|.+. .++.. .+++|+.|++++|.+.+..|..++ .+++|+.|++++|.+.+..+..+. .+++|
T Consensus 106 L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEG----------CRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp CCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGG----------GGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhc----------CCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 9999988 34332 468899999999998865554443 456899999999999887777665 68999
Q ss_pred cEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEccCcc
Q 042610 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNA 339 (351)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 339 (351)
+.|++++|.+++..+ ...+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+.+.....+++|+.+++++|+
T Consensus 172 ~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 172 EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 999999999885532 3468999999999999985 4555888999999999999999754443378999999999999
Q ss_pred cc-cccc
Q 042610 340 LG-DRFV 345 (351)
Q Consensus 340 ~~-~~~p 345 (351)
+. +.+|
T Consensus 249 l~c~~~~ 255 (487)
T 3oja_A 249 FHCGTLR 255 (487)
T ss_dssp BCHHHHH
T ss_pred CcCcchH
Confidence 87 5544
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=6.1e-24 Score=199.73 Aligned_cols=326 Identities=14% Similarity=0.036 Sum_probs=231.9
Q ss_pred CCCCccEEEccCcccc----ccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccC-CCcchhhhcc
Q 042610 3 ELKNLFELNFGGNKFE----GHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLAN 77 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~ 77 (351)
++++|++|+++++.+. ..++..+.++++|++|++++|.+.+ .+..+..+++|++|++++..... .......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4789999999999886 3455566789999999999998885 66788999999999998643221 1122345566
Q ss_pred cccccccccccccccceeeecCcCCccceeEEEcCCCCCCc--CCchhhcCCCceEEEccCcccCCCcChhhhhcCccce
Q 042610 78 LSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGA--IPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 155 (351)
Q Consensus 78 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 155 (351)
+++|+.+++...... .....+..+++|++|++++|.+.. ++..+..+++|+.|+++ +.+.......+...+++|+
T Consensus 269 ~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCTT--TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred cccccccCccccchh--HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 778888877654221 122235567799999999998632 33446788999999999 4444344444557789999
Q ss_pred EEEecC-----------Cccccccc---cccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecC----ccccCCCC
Q 042610 156 LLYLVN-----------NSFSGFQL---TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKN----SFEGNIPS 217 (351)
Q Consensus 156 ~L~l~~-----------~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~----~~~~~~~~ 217 (351)
+|++.. +.++.... ...+++|+.|++..+.+.+..+..+...+++|+.|+++.+ .+++ .|.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~-~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD-LPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS-CCC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC-chH
Confidence 999993 44543222 2358899999998888887666676656999999999743 3332 111
Q ss_pred CccccccchhhhcCccccceeeecccc--cccccccccc-CCCCccEEEccCCccccc-CCCCccCCCCCcEEEccCccc
Q 042610 218 SIGKMQGLLATYMNMTQLWALYLHNDN--FSRKIKDGLL-RSTELEDLDISNNILSGH-IPSWMGNFSHLHTLSMSNNHL 293 (351)
Q Consensus 218 ~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~ 293 (351)
. ..+...+..+++|+.|+++.|. +++.....+. .+++|+.|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 425 ~----~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 425 D----NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp H----HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred H----HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 0 1122345678899999997644 4444433333 478999999999998753 344567889999999999998
Q ss_pred ccC-cchhhhcccCCceeecCCCcccccccccc--ccCcccEEEccC
Q 042610 294 EGN-IPVQCQNLAGLYIPDISENNLSGSMISTL--NLSSVACLYLQN 337 (351)
Q Consensus 294 ~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--~~~~L~~l~l~~ 337 (351)
++. ++..+..+++|+.|++++|++++.....+ .+|.+....+..
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred cHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 755 44555789999999999999987655444 677776655543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=5.8e-22 Score=167.55 Aligned_cols=200 Identities=25% Similarity=0.305 Sum_probs=134.9
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccccccc--ccccCCcEEEee
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT--SAQHGLLSLDIS 182 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~ 182 (351)
..+.++++++.+..+|..+. ++++.|++++|.+. .++...+..+++|+.|++++|.+..++.. ..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45678888888888876544 47888999888887 56655567788888888888888766442 346777777777
Q ss_pred CCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEE
Q 042610 183 SNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDL 262 (351)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 262 (351)
+|.+. .++...+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRV----------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHH----------hCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 77776 555555556777777777777766433332 2344567777777776665555556666677777
Q ss_pred EccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 263 DISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 263 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77777666444445666677777777777666555555666667777777776654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.9e-22 Score=171.15 Aligned_cols=205 Identities=18% Similarity=0.147 Sum_probs=95.6
Q ss_pred CceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEeeCCccccccCchhhhcCCCceEEE
Q 042610 128 NLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMN 205 (351)
Q Consensus 128 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 205 (351)
+++.|++++|.+. .++...+..+++|+.|++++|.+..+.. ...+++|++|++++|.+. .++...+..+++|+.|+
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEE
Confidence 3444444444444 2332223344444444444444443332 123444444444444444 22222222455555555
Q ss_pred eecCccccCCCCCccccccchhhhcCccccceeeecccccccc-ccccccCCCCccEEEccCCcccccCCCCccCCCCCc
Q 042610 206 VSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRK-IKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLH 284 (351)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 284 (351)
+++|.+.+..+.. +..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++..+..+..+.+|+
T Consensus 107 l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 107 AVETNLASLENFP----------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CTTSCCCCSTTCC----------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCccccCchh----------cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 5555544322212 22333555555555555442 244455555555555555555544334444444444
Q ss_pred ----EEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCcccccccc
Q 042610 285 ----TLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFV 345 (351)
Q Consensus 285 ----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p 345 (351)
+|++++|.+.+..+..+. ..+|+.|++++|.+++.++..+ .+++|++|++++|++.+.-|
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 555555555533333322 2355666666665555544444 55566666666665555444
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=7.9e-22 Score=168.19 Aligned_cols=203 Identities=25% Similarity=0.242 Sum_probs=149.9
Q ss_pred cCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEE
Q 042610 100 CLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSL 179 (351)
Q Consensus 100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L 179 (351)
+..+.+++.++++++.+..+|..+. ++++.|++++|.+. .++...+..+++|+.|++++|.+..++....+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 4455688899999999988887654 58999999999987 55555567899999999999999887766778888888
Q ss_pred EeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCc
Q 042610 180 DISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTEL 259 (351)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 259 (351)
++++|.+. .+|..+. .+++|+.|++++|.+++..+..+ ..+++|++|++++|.+.+..+..+..+++|
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGAL----------RGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTT----------TTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHH----------cCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 88888887 6776553 67888888888888774333333 344567777777777766655566667777
Q ss_pred cEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
+.|++++|.++...+..+..+++|++|++++|.+. .+|..+...+.|+.+++++|.+.
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77777777777444445566777777777777776 55666666667777777777664
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.4e-24 Score=204.22 Aligned_cols=337 Identities=14% Similarity=0.126 Sum_probs=179.6
Q ss_pred CCCCccEEEccCccccccCCcccc-CCCCCcEEEccCC-cCCCC-CchhhccCCCCCeEEeecccccCCCcc-hhhh-cc
Q 042610 3 ELKNLFELNFGGNKFEGHLPQCLN-NLTHLKVLDVSSN-KLSGI-LPSVIANLTSLEYLALYDNRFKGRLFS-FYSL-AN 77 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l-~~ 77 (351)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+++. .+..+.++++|++|++++|.+...... ...+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 467888888888877665555554 5788888888877 44422 333344688888888888876542211 1112 24
Q ss_pred ccccccccccccc-ccceeeec-CcCCccceeEEEcCCCC-CCcCCchhhcCCCceEEEccCcc----------------
Q 042610 78 LSKFEAFQLSMET-DLLQVEIE-NCLPTFQLKVLSLPNCN-LGAIPNFLLLQFNLKYLDLSHNK---------------- 138 (351)
Q Consensus 78 l~~L~~l~l~~~~-~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~~~---------------- 138 (351)
+++|+.+++..+. ........ ....+++|+.|++++|. +..++..+..+++|+.+++..+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 5677777777654 11111111 11234677777777662 23344444444455555433221
Q ss_pred ----------cCC----CcChhhhhcCccceEEEecCCcccccccc---ccccCCcEEEeeCCccccccCchhhhcCCCc
Q 042610 139 ----------LAG----NFPTWLLENNTKLELLYLVNNSFSGFQLT---SAQHGLLSLDISSNSFTGELPQNMDIVLPKL 201 (351)
Q Consensus 139 ----------~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 201 (351)
+.. .++ .++..+++|+.|++++|.+...... ..+++|++|++.++ +.+.....+...+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccchhhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 000 011 1122445666666666554332111 24455566665555 2222222222235555
Q ss_pred eEEEeecC---------ccccCCCCCcc-ccccc---------------hhhhcCccccceeeec--c----ccccc---
Q 042610 202 VYMNVSKN---------SFEGNIPSSIG-KMQGL---------------LATYMNMTQLWALYLH--N----DNFSR--- 247 (351)
Q Consensus 202 ~~L~l~~~---------~~~~~~~~~~~-~~~~l---------------~~~~~~~~~L~~L~l~--~----~~~~~--- 247 (351)
+.|++.++ .+++.....+. .++++ ......+++|+.|+++ + +.++.
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 55555332 11110000000 01100 0112246677888877 2 23331
Q ss_pred --cccccccCCCCccEEEccCCcccccCCCCccC-CCCCcEEEccCcccccCcchhh-hcccCCceeecCCCcccccccc
Q 042610 248 --KIKDGLLRSTELEDLDISNNILSGHIPSWMGN-FSHLHTLSMSNNHLEGNIPVQC-QNLAGLYIPDISENNLSGSMIS 323 (351)
Q Consensus 248 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~ 323 (351)
.+...+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++....
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 1112244567788888866 444433333433 7888888888888876555554 6788899999999988654443
Q ss_pred cc--ccCcccEEEccCccccc
Q 042610 324 TL--NLSSVACLYLQNNALGD 342 (351)
Q Consensus 324 ~~--~~~~L~~l~l~~n~~~~ 342 (351)
.+ .+++|++|++++|++++
T Consensus 500 ~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHhCCCCCEEeeeCCCCCH
Confidence 23 58889999999888743
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=4.5e-24 Score=200.67 Aligned_cols=336 Identities=14% Similarity=0.095 Sum_probs=219.6
Q ss_pred CCCCccEEEccCccccc---cCCc------------cccCCCCCcEEEccCCcCCCCCchhhc-cCCCCCeEEeeccccc
Q 042610 3 ELKNLFELNFGGNKFEG---HLPQ------------CLNNLTHLKVLDVSSNKLSGILPSVIA-NLTSLEYLALYDNRFK 66 (351)
Q Consensus 3 ~l~~L~~L~l~~~~~~~---~~~~------------~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~ 66 (351)
++++|++|+++++.... ..|. ....+++|++|++++|.+++..+..+. .+++|++|++++|...
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 58899999999986321 1121 134689999999999998866666665 6899999999999432
Q ss_pred CCCcch-hhhcccccccccccccccccceeeec----CcCCccceeEEEcCCCC--C--CcCCchhhcCCCceEEEccCc
Q 042610 67 GRLFSF-YSLANLSKFEAFQLSMETDLLQVEIE----NCLPTFQLKVLSLPNCN--L--GAIPNFLLLQFNLKYLDLSHN 137 (351)
Q Consensus 67 ~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~--~--~~~~~~~~~~~~L~~l~l~~~ 137 (351)
. .... .....+++|+.+++..+.. ...... ....+++|+.|+++++. + ..++.....+++|+.|++++|
T Consensus 144 ~-~~~l~~~~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 144 S-TDGLAAIAATCRNLKELDLRESDV-DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp E-HHHHHHHHHHCTTCCEEECTTCEE-ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred C-HHHHHHHHHhCCCCCEEeCcCCcc-CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 1 2122 2334789999999998762 222221 22366799999999987 2 122333455789999999988
Q ss_pred ccCCCcChhhhhcCccceEEEecCCcc--------------------------cc-----ccc-cccccCCcEEEeeCCc
Q 042610 138 KLAGNFPTWLLENNTKLELLYLVNNSF--------------------------SG-----FQL-TSAQHGLLSLDISSNS 185 (351)
Q Consensus 138 ~~~~~~~~~~~~~~~~L~~L~l~~~~l--------------------------~~-----~~~-~~~~~~L~~L~l~~~~ 185 (351)
...+.++ ..+..+++|+.|.+..+.. .. ++. ...+++|++|++++|.
T Consensus 222 ~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 222 VPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp SCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred CcHHHHH-HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 3322333 3356788888887654421 10 110 1157899999999998
Q ss_pred cccccCchhhhcCCCceEEEeecCccccCCCCC----ccccccc---------------------hhhhcCccccceeee
Q 042610 186 FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSS----IGKMQGL---------------------LATYMNMTQLWALYL 240 (351)
Q Consensus 186 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~l---------------------~~~~~~~~~L~~L~l 240 (351)
+.+.....+...+++|+.|++++| +.+..... ...++.+ ......+++|+.|.+
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 765444444457899999999988 33111000 0111111 011223667777777
Q ss_pred cccccccccccccc-CCCCccEEEcc--C----Cccccc-----CCCCccCCCCCcEEEccCcccccCcchhhhc-ccCC
Q 042610 241 HNDNFSRKIKDGLL-RSTELEDLDIS--N----NILSGH-----IPSWMGNFSHLHTLSMSNNHLEGNIPVQCQN-LAGL 307 (351)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L 307 (351)
.++.++......+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+..+.. +++|
T Consensus 380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 66666655444443 47888999888 3 334311 111256778999999987 666555555554 8999
Q ss_pred ceeecCCCcccccccccc--ccCcccEEEccCcccccc
Q 042610 308 YIPDISENNLSGSMISTL--NLSSVACLYLQNNALGDR 343 (351)
Q Consensus 308 ~~L~l~~n~~~~~~~~~~--~~~~L~~l~l~~n~~~~~ 343 (351)
+.|++++|.+++.....+ ++++|++|++++|++++.
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 999999999877555444 689999999999998643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.9e-21 Score=164.50 Aligned_cols=205 Identities=15% Similarity=0.182 Sum_probs=172.9
Q ss_pred CceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEee
Q 042610 128 NLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVS 207 (351)
Q Consensus 128 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 207 (351)
.+..+++..+.+..... ...+++|+.|++.++.+..++....++.|+.|++++|.+. .++ .+ ..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DIS-AL-KELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC-CCG-GG-TTCTTCCEEECT
T ss_pred HHHHHHhcCcccccccc---cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC-Cch-hh-cCCCCCCEEECC
Confidence 45556666666653333 4568999999999999998877788999999999999987 443 33 379999999999
Q ss_pred cCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEE
Q 042610 208 KNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLS 287 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 287 (351)
+|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..++.+++|++|+
T Consensus 94 ~n~l~~~~~~~~----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 94 GNQLQSLPNGVF----------DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp TSCCCCCCTTTT----------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCccCccChhHh----------cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 999885444333 4566899999999999987777788999999999999999976677789999999999
Q ss_pred ccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEEEccCccccccccccC
Q 042610 288 MSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACLYLQNNALGDRFVKLN 348 (351)
Q Consensus 288 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~p~~~ 348 (351)
+++|.+.+..+..+..+++|++|++++|.+.+.++..+ .+++|++|++++|++.+..|.+.
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 225 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 225 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHH
Confidence 99999997777778999999999999999999888777 89999999999999999888653
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.8e-23 Score=184.89 Aligned_cols=268 Identities=18% Similarity=0.152 Sum_probs=134.8
Q ss_pred cCCccccCCCCCcEEEccCCcCCCCCch----hhccCCCCCeEEeecccccCCCcc-hhhhcccccccccccccccccce
Q 042610 20 HLPQCLNNLTHLKVLDVSSNKLSGILPS----VIANLTSLEYLALYDNRFKGRLFS-FYSLANLSKFEAFQLSMETDLLQ 94 (351)
Q Consensus 20 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~l~l~~~~~~~~ 94 (351)
.++..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+...... ...+..+.
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~--------------- 87 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL--------------- 87 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH---------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH---------------
Confidence 4566677788888888888887755333 356788888888888754321111 00111000
Q ss_pred eeecCcCCccceeEEEcCCCCCCc-----CCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc
Q 042610 95 VEIENCLPTFQLKVLSLPNCNLGA-----IPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL 169 (351)
Q Consensus 95 ~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 169 (351)
..+..+++|++|++++|.+.. ++..+..+++|+.|++++|.+....+..+...+..+. .+.+
T Consensus 88 ---~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~-----~~~~----- 154 (386)
T 2ca6_A 88 ---QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA-----VNKK----- 154 (386)
T ss_dssp ---HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH-----HHHH-----
T ss_pred ---HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh-----hhhh-----
Confidence 112233455555665555533 4445555555666666555553211111111110000 0000
Q ss_pred cccccCCcEEEeeCCcccc-ccCc--hhhhcCCCceEEEeecCccccCCCCCccccccchh-hhcCccccceeeeccccc
Q 042610 170 TSAQHGLLSLDISSNSFTG-ELPQ--NMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLA-TYMNMTQLWALYLHNDNF 245 (351)
Q Consensus 170 ~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~ 245 (351)
....+.|++|++++|++.+ .++. .....+++|+.|++++|.+.+. +...+.. .+..+++|+.|++++|.+
T Consensus 155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~------g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE------GIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH------HHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh------HHHHHHHHHhhcCCCccEEECcCCCC
Confidence 0000445555555554431 2221 1122456666666666655420 1111111 334445566666666655
Q ss_pred c----ccccccccCCCCccEEEccCCccccc----CCCCc--cCCCCCcEEEccCccccc----Ccchhh-hcccCCcee
Q 042610 246 S----RKIKDGLLRSTELEDLDISNNILSGH----IPSWM--GNFSHLHTLSMSNNHLEG----NIPVQC-QNLAGLYIP 310 (351)
Q Consensus 246 ~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~--~~l~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L 310 (351)
. ..++..+..+++|+.|++++|.+++. ++..+ +.+++|++|++++|.+.+ .+|..+ .++++|+.|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 4 33444555666677777777666543 23333 236677777777777665 355555 446777777
Q ss_pred ecCCCcccccc
Q 042610 311 DISENNLSGSM 321 (351)
Q Consensus 311 ~l~~n~~~~~~ 321 (351)
++++|.+++..
T Consensus 309 ~l~~N~l~~~~ 319 (386)
T 2ca6_A 309 ELNGNRFSEED 319 (386)
T ss_dssp ECTTSBSCTTS
T ss_pred EccCCcCCcch
Confidence 77777766554
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=3.3e-21 Score=163.47 Aligned_cols=202 Identities=22% Similarity=0.250 Sum_probs=102.6
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccc
Q 042610 6 NLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQ 85 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~ 85 (351)
++++|++++|.+++..+..+.++++|++|++++|++.+..+.++.++++|++|++++|.+..
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 90 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------------------ 90 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc------------------
Confidence 35666666666654444455666666666666666655544555666666666666665542
Q ss_pred cccccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCC-cChhhhhcCccceEEEecCCc
Q 042610 86 LSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGN-FPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 163 (351)
.....+..+.+|++|++++|.+..++. .+..+++|+.|++++|.+.+. +|.. +..+++|+.|++++|.
T Consensus 91 ---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 91 ---------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ---------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred ---------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCC
Confidence 112233444455555555555544432 345555555555555555421 2332 3455555556655555
Q ss_pred ccccccc--ccccCCc----EEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccce
Q 042610 164 FSGFQLT--SAQHGLL----SLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWA 237 (351)
Q Consensus 164 l~~~~~~--~~~~~L~----~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 237 (351)
+..+... ..++.|+ .|++++|.+. .++...+ ...+|+.|++++|.+.+..+.. +..+++|+.
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~ 228 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGI----------FDRLTSLQK 228 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTT----------TTTCCSCCE
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhH----------hcccccccE
Confidence 5544221 1233333 5555555555 3333333 2335666666666554222111 223445566
Q ss_pred eeeccccccc
Q 042610 238 LYLHNDNFSR 247 (351)
Q Consensus 238 L~l~~~~~~~ 247 (351)
|++++|.+..
T Consensus 229 L~l~~N~~~c 238 (276)
T 2z62_A 229 IWLHTNPWDC 238 (276)
T ss_dssp EECCSSCBCC
T ss_pred EEccCCcccc
Confidence 6666555543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.4e-20 Score=160.43 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=93.6
Q ss_pred CCCCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccc
Q 042610 2 CELKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKF 81 (351)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 81 (351)
.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+...+.
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----------- 72 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----------
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-----------
Confidence 46778888888888887 5555443 678888888888887777778888888888888887643100
Q ss_pred cccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecC
Q 042610 82 EAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVN 161 (351)
Q Consensus 82 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 161 (351)
...+++|+.|++++|.+..+|..+..+++|+.|++++|.++ .++...+..+++|+.|++++
T Consensus 73 ------------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 73 ------------------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp ------------------CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTT
T ss_pred ------------------CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCC
Confidence 12344677888888887777777777777888888877776 55544456666677776666
Q ss_pred Cccccc
Q 042610 162 NSFSGF 167 (351)
Q Consensus 162 ~~l~~~ 167 (351)
|.+..+
T Consensus 134 N~l~~~ 139 (290)
T 1p9a_G 134 NELKTL 139 (290)
T ss_dssp SCCCCC
T ss_pred CCCCcc
Confidence 666543
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.4e-20 Score=156.69 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=133.2
Q ss_pred CCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccceeEE
Q 042610 30 HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVL 109 (351)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 109 (351)
+.+.+++++++++. +|..+ .++|++|++++|.+...+. ..+..+++|++|
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~---------------------------~~~~~l~~L~~L 66 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPS---------------------------KAFHRLTKLRLL 66 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCT---------------------------TSSSSCTTCCEE
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCH---------------------------HHhcCCCCCCEE
Confidence 46677777777763 44333 2567777777766543111 112333455555
Q ss_pred EcCCCCCCcCCch-hhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCcccc
Q 042610 110 SLPNCNLGAIPNF-LLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTG 188 (351)
Q Consensus 110 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 188 (351)
++++|.+..++.. +..+++|+.|++++|.+. .++...+..+++ |+.|++++|.+.
T Consensus 67 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~----------------------L~~L~l~~n~l~- 122 (270)
T 2o6q_A 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVN----------------------LAELRLDRNQLK- 122 (270)
T ss_dssp ECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSS----------------------CCEEECCSSCCC-
T ss_pred ECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccC----------------------CCEEECCCCccC-
Confidence 5555555555432 244555555555555554 344333344444 555555555554
Q ss_pred ccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCc
Q 042610 189 ELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNI 268 (351)
Q Consensus 189 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (351)
.++...+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGV----------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eeCHHHhCcCcCCCEEECCCCcCCccCHhH----------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 444444457999999999999987433332 3456789999999999988777778889999999999999
Q ss_pred ccccCCCCccCCCCCcEEEccCccccc
Q 042610 269 LSGHIPSWMGNFSHLHTLSMSNNHLEG 295 (351)
Q Consensus 269 ~~~~~~~~~~~l~~L~~L~l~~~~~~~ 295 (351)
+++..+..+..+++|+.|++++|++..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcCCHHHhccccCCCEEEecCCCeeC
Confidence 996666678899999999999999863
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.6e-22 Score=176.06 Aligned_cols=265 Identities=16% Similarity=0.164 Sum_probs=152.5
Q ss_pred EEEccCccccccCCccccCCCCCcEEEccCCcCCCCCc----hhhccCC-CCCeEEeecccccCCCcchhhhcccccccc
Q 042610 9 ELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILP----SVIANLT-SLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 9 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
+++++.+.+.+.+|..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+..... ..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~~----- 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS--DELVQI----- 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH--HHHHHH-----
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH--HHHHHH-----
Confidence 35677777776666666666668888888888776665 5666777 78888888887653111 111110
Q ss_pred cccccccccceeeecCcCC-ccceeEEEcCCCCCCcCC-c----hhhcC-CCceEEEccCcccCCCcChhhhhcCccceE
Q 042610 84 FQLSMETDLLQVEIENCLP-TFQLKVLSLPNCNLGAIP-N----FLLLQ-FNLKYLDLSHNKLAGNFPTWLLENNTKLEL 156 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~-~----~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 156 (351)
+.. ..+|++|++++|.+...+ . .+... ++|+.|++++|.+.+..+..+...
T Consensus 75 ----------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~------ 132 (362)
T 3goz_A 75 ----------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA------ 132 (362)
T ss_dssp ----------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH------
T ss_pred ----------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH------
Confidence 000 124444445444443221 1 12222 344444444444432211111000
Q ss_pred EEecCCcccccccccc-ccCCcEEEeeCCcccccc----CchhhhcCC-CceEEEeecCccccCCCCCccccccchhhhc
Q 042610 157 LYLVNNSFSGFQLTSA-QHGLLSLDISSNSFTGEL----PQNMDIVLP-KLVYMNVSKNSFEGNIPSSIGKMQGLLATYM 230 (351)
Q Consensus 157 L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 230 (351)
... .+.|++|++++|.+.+.. +..+. .++ +|+.|++++|.+.+..+..+. ..+.
T Consensus 133 -------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~------~~l~ 192 (362)
T 3goz_A 133 -------------FSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELA------KFLA 192 (362)
T ss_dssp -------------HTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHH------HHHH
T ss_pred -------------HHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHH------HHHH
Confidence 001 235555566555555322 22222 344 899999999988754443322 3344
Q ss_pred Cc-cccceeeeccccccccc----cccccC-CCCccEEEccCCcccccCC----CCccCCCCCcEEEccCcccccC----
Q 042610 231 NM-TQLWALYLHNDNFSRKI----KDGLLR-STELEDLDISNNILSGHIP----SWMGNFSHLHTLSMSNNHLEGN---- 296 (351)
Q Consensus 231 ~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~---- 296 (351)
.+ ++|++|++++|.+.+.. +..+.. .++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 193 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~ 272 (362)
T 3goz_A 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH
T ss_pred hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH
Confidence 55 48999999998887643 233333 4589999999988875332 3456778899999998885433
Q ss_pred ---cchhhhcccCCceeecCCCccccccc
Q 042610 297 ---IPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 297 ---~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
++..+..+++|+.|++++|.+....+
T Consensus 273 ~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 273 CKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 22345667788888888888876533
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.2e-22 Score=179.12 Aligned_cols=237 Identities=18% Similarity=0.261 Sum_probs=170.3
Q ss_pred ccceeEEEcCCCCCCc-----CCchhhcCCCceEEEccCcccC---CCcChhh------hhcCccceEEEecCCcccccc
Q 042610 103 TFQLKVLSLPNCNLGA-----IPNFLLLQFNLKYLDLSHNKLA---GNFPTWL------LENNTKLELLYLVNNSFSGFQ 168 (351)
Q Consensus 103 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~~~~l~~~~ 168 (351)
++.|+.|++++|.+.. ++..+..+++|+.|++++|.+. +.+|..+ +..+++|+.|++++|.+....
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3466777777776633 2334556777788877775432 2334332 246677888888888776521
Q ss_pred ------ccccccCCcEEEeeCCccccccCchhhh---cC---------CCceEEEeecCccccCCCCCccccccchhhhc
Q 042610 169 ------LTSAQHGLLSLDISSNSFTGELPQNMDI---VL---------PKLVYMNVSKNSFEGNIPSSIGKMQGLLATYM 230 (351)
Q Consensus 169 ------~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 230 (351)
....++.|++|++++|.+.+..+..+.. .+ ++|+.|++++|.+.+ ..++.+...+.
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------~~~~~l~~~l~ 184 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------GSMKEWAKTFQ 184 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------GGHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------HHHHHHHHHHH
Confidence 1235677888888888776333333221 23 899999999998863 23333334566
Q ss_pred Cccccceeeecccccccc-----ccccccCCCCccEEEccCCccc----ccCCCCccCCCCCcEEEccCcccccC----c
Q 042610 231 NMTQLWALYLHNDNFSRK-----IKDGLLRSTELEDLDISNNILS----GHIPSWMGNFSHLHTLSMSNNHLEGN----I 297 (351)
Q Consensus 231 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~----~ 297 (351)
.+++|+.|++++|.+... .+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+.+. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 788999999999988743 3337788999999999999985 46677888999999999999999865 4
Q ss_pred chhhhc--ccCCceeecCCCcccc----cccccc--ccCcccEEEccCcccccccc
Q 042610 298 PVQCQN--LAGLYIPDISENNLSG----SMISTL--NLSSVACLYLQNNALGDRFV 345 (351)
Q Consensus 298 ~~~~~~--~~~L~~L~l~~n~~~~----~~~~~~--~~~~L~~l~l~~n~~~~~~p 345 (351)
+..+.. +++|++|++++|.++. ..+..+ ++++|++|++++|++++..|
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 566644 8999999999999998 344444 58999999999999987664
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.3e-20 Score=160.68 Aligned_cols=197 Identities=20% Similarity=0.260 Sum_probs=151.4
Q ss_pred CCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEE
Q 042610 101 LPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLD 180 (351)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~ 180 (351)
..+.+|+.|+++++.+..++ .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+...+....+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 34568889999999888776 5788889999999999887 5555 578899999999999988877666788899999
Q ss_pred eeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCcc
Q 042610 181 ISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELE 260 (351)
Q Consensus 181 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 260 (351)
+++|.+. .++. ...+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-----------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI-SP-----------LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-GG-----------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CCCCCCC-Cchh--hcCCCCCCEEECCCCccCcC-cc-----------ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 9988887 4543 34788899999988887632 11 3456678888888887766433 67788888
Q ss_pred EEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccc
Q 042610 261 DLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
.|++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++.+.
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 88888888874332 677888888888888887544 36788888888888888876433
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=7.1e-20 Score=151.85 Aligned_cols=203 Identities=14% Similarity=0.205 Sum_probs=144.9
Q ss_pred CCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc-cccccc--cccccCCcEEEeeC-CccccccC
Q 042610 116 LGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS-FSGFQL--TSAQHGLLSLDISS-NSFTGELP 191 (351)
Q Consensus 116 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~--~~~~~~L~~L~l~~-~~~~~~~~ 191 (351)
+..+|. + .++++.+++++|.+. .++...+..+++|+.|++++|. +..++. ...+++|++|++++ |.+. .++
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~ 97 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID 97 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC
T ss_pred ccccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC
Confidence 445554 2 226777777777776 5555455667777777777775 666543 23567777777777 7776 555
Q ss_pred chhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccc---eeeeccc-cccccccccccCCCCcc-EEEccC
Q 042610 192 QNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLW---ALYLHND-NFSRKIKDGLLRSTELE-DLDISN 266 (351)
Q Consensus 192 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~ 266 (351)
...+..+++|+.|++++|.+.+ +|. +.. +++|+ .|++++| .+.+..+..+..+++|+ .|++++
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~----------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTK----------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTT----------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-ccc----------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 5545578888888888888764 443 333 33444 8888888 77666666688888999 999999
Q ss_pred CcccccCCC-CccCCCCCcEEEccCcc-cccCcchhhhcc-cCCceeecCCCccccccccccccCcccEEEccCcc
Q 042610 267 NILSGHIPS-WMGNFSHLHTLSMSNNH-LEGNIPVQCQNL-AGLYIPDISENNLSGSMISTLNLSSVACLYLQNNA 339 (351)
Q Consensus 267 ~~~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 339 (351)
|.+. .+|. .+.. ++|++|++++|+ +.+..+..+..+ ++|+.|++++|+++..++. .+++|+.|+++++.
T Consensus 166 n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 166 NGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 9888 4444 4444 789999999995 886666778888 9999999999998876554 57889999888763
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=161.94 Aligned_cols=226 Identities=23% Similarity=0.232 Sum_probs=167.9
Q ss_pred ceeEEEcCCCCCCc--CCc--hhhcCCCceEEEccCcccCCCcChhhh-hcCccceEEEecCCccccccc------cccc
Q 042610 105 QLKVLSLPNCNLGA--IPN--FLLLQFNLKYLDLSHNKLAGNFPTWLL-ENNTKLELLYLVNNSFSGFQL------TSAQ 173 (351)
Q Consensus 105 ~L~~L~l~~~~~~~--~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~------~~~~ 173 (351)
.++.+.+.++.+.. +.. ....+++|+.|++++|.+.+..|..++ ..+++|++|++++|.+..... ...+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46677777766621 111 122345799999999998867776543 678999999999999886322 1257
Q ss_pred cCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccC--CCCCccccccchhhhcCccccceeeecccccccccc-
Q 042610 174 HGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGN--IPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIK- 250 (351)
Q Consensus 174 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~- 250 (351)
++|++|++++|.+. .++...+..+++|+.|++++|.+.+. ++.. ..+..+++|++|++++|.+.....
T Consensus 145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~~~~~l~~L~~L~Ls~N~l~~l~~~ 215 (310)
T 4glp_A 145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAA--------LCPHKFPAIQNLALRNTGMETPTGV 215 (310)
T ss_dssp SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT--------SCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHH--------HhhhcCCCCCEEECCCCCCCchHHH
Confidence 89999999999997 44444444799999999999986531 1110 112456789999999998864321
Q ss_pred -c-cccCCCCccEEEccCCcccccCCCCccCC---CCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc
Q 042610 251 -D-GLLRSTELEDLDISNNILSGHIPSWMGNF---SHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL 325 (351)
Q Consensus 251 -~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 325 (351)
. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++.+. ..
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~ 291 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PD 291 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TT
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hh
Confidence 1 24677999999999999997767777665 79999999999999 6676653 899999999999997532 23
Q ss_pred ccCcccEEEccCcccccc
Q 042610 326 NLSSVACLYLQNNALGDR 343 (351)
Q Consensus 326 ~~~~L~~l~l~~n~~~~~ 343 (351)
.+++|++|++++|++++.
T Consensus 292 ~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SCCCCSCEECSSTTTSCC
T ss_pred hCCCccEEECcCCCCCCC
Confidence 789999999999999853
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.2e-19 Score=151.56 Aligned_cols=177 Identities=20% Similarity=0.214 Sum_probs=100.9
Q ss_pred CceEEEccCcccCCCcChhhhhcCccceEEEecCCcccccccc--ccccCCcEEEeeCCccccccCchhhhcCCCceEEE
Q 042610 128 NLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT--SAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMN 205 (351)
Q Consensus 128 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 205 (351)
+.+.++++++.+. .+|..+ .++++.|++++|.+...... ..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 4567777777776 666543 35677777777776665432 34566666666666665 33333333566666666
Q ss_pred eecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcE
Q 042610 206 VSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHT 285 (351)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 285 (351)
+++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..++.+++|++
T Consensus 90 L~~n~l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 90 LANNQLASLPLGV----------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp CTTSCCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcccccChhH----------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 6666665322222 223345666666666555444444555566666666666655443445555666666
Q ss_pred EEccCcccccCcchhhhcccCCceeecCCCcccc
Q 042610 286 LSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSG 319 (351)
Q Consensus 286 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 319 (351)
|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 6666666654444455556666666666665544
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.1e-19 Score=156.47 Aligned_cols=192 Identities=22% Similarity=0.305 Sum_probs=113.0
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
+++|++|+++++.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~----~~--------- 102 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV----SA--------- 102 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC----GG---------
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc----hh---------
Confidence 456777777777665 333 46667777777777777664433 66677777777777765431 12
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (351)
+..+.+|+.|++++|.+..++. +..+++|+.|++++|.+. .++. +..+++|+.|++++|.
T Consensus 103 ----------------~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 103 ----------------IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp ----------------GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSC
T ss_pred ----------------hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCc
Confidence 3334456666666666655543 555666666666666665 3333 4556666666666666
Q ss_pred cccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccc
Q 042610 164 FSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHND 243 (351)
Q Consensus 164 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 243 (351)
+...+....+++|+.|++++|.+. .++. ...+++|+.|++++|.+.+.. .+..+++|+.|++++|
T Consensus 163 l~~~~~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~------------~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 163 VSDLTPLANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS------------PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG------------GGTTCTTCCEEEEEEE
T ss_pred CCCChhhcCCCCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCccc------------cccCCCCCCEEEccCC
Confidence 665555455666666666666665 3332 225666666666666655311 1234556666666666
Q ss_pred cccc
Q 042610 244 NFSR 247 (351)
Q Consensus 244 ~~~~ 247 (351)
.+..
T Consensus 228 ~i~~ 231 (308)
T 1h6u_A 228 TITN 231 (308)
T ss_dssp EEEC
T ss_pred eeec
Confidence 6544
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1e-20 Score=165.20 Aligned_cols=251 Identities=18% Similarity=0.198 Sum_probs=150.7
Q ss_pred CCcEEEccCCcCCCCCchhhccC--CCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCcccee
Q 042610 30 HLKVLDVSSNKLSGILPSVIANL--TSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLK 107 (351)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 107 (351)
.++.++++++.+. +..+..+ ++++.|+++++.+.+.... +..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~----------------------------~~~~~~L~ 96 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE----------------------------HFSPFRVQ 96 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS----------------------------CCCCBCCC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh----------------------------hccCCCCC
Confidence 3666777666654 3445555 6677777766665431111 22344667
Q ss_pred EEEcCCCCCCc--CCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC-ccccc--cc-cccccCCcEEEe
Q 042610 108 VLSLPNCNLGA--IPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN-SFSGF--QL-TSAQHGLLSLDI 181 (351)
Q Consensus 108 ~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~--~~-~~~~~~L~~L~l 181 (351)
.|++++|.+.. ++..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++| .+... +. ...+++|++|++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 77777766632 5566667777777777777765444443 355777777777777 45432 11 235667777777
Q ss_pred eCC-ccccc-cCchhhhcCC-CceEEEeecCc--cccCCCCCccccccchhhhcCccccceeeecccc-ccccccccccC
Q 042610 182 SSN-SFTGE-LPQNMDIVLP-KLVYMNVSKNS--FEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDN-FSRKIKDGLLR 255 (351)
Q Consensus 182 ~~~-~~~~~-~~~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~ 255 (351)
++| .+.+. ++..+ ..++ +|+.|++++|. +++ ..+...+..+++|++|++++|. +++..+..+..
T Consensus 176 ~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~~~~~~---------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 176 SWCFDFTEKHVQVAV-AHVSETITQLNLSGYRKNLQK---------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp CCCTTCCHHHHHHHH-HHSCTTCCEEECCSCGGGSCH---------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred CCCCCcChHHHHHHH-HhcccCCCEEEeCCCcccCCH---------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 777 66533 33333 3677 88888887773 321 1111234456677777777777 55555666777
Q ss_pred CCCccEEEccCCc-ccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc
Q 042610 256 STELEDLDISNNI-LSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL 325 (351)
Q Consensus 256 ~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 325 (351)
+++|+.|++++|. +.+.....++.+++|++|++++| +.+.....+. ..++.|++++|.+++..+..+
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 7888888888874 33232235667788888888887 4433222221 235666677888777666554
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=1.9e-20 Score=165.08 Aligned_cols=187 Identities=19% Similarity=0.185 Sum_probs=127.8
Q ss_pred CCCccEEEccCccccccCC----ccccCCC-CCcEEEccCCcCCCCCchhhccC-----CCCCeEEeecccccCCCcchh
Q 042610 4 LKNLFELNFGGNKFEGHLP----QCLNNLT-HLKVLDVSSNKLSGILPSVIANL-----TSLEYLALYDNRFKGRLFSFY 73 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~ 73 (351)
.++|++|++++|.+++..+ ..+.+++ +|++|++++|++++..+..+..+ ++|++|++++|.++.... .
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~--~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS--D 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH--H
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH--H
Confidence 4569999999999986665 6778888 99999999999998877777775 999999999998864221 1
Q ss_pred hhcccccccccccccccccceeeecCcCCc-cceeEEEcCCCCCCcCCc-h----hhc-CCCceEEEccCcccCCCcChh
Q 042610 74 SLANLSKFEAFQLSMETDLLQVEIENCLPT-FQLKVLSLPNCNLGAIPN-F----LLL-QFNLKYLDLSHNKLAGNFPTW 146 (351)
Q Consensus 74 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~l~l~~~~~~~~~~~~ 146 (351)
.+.. .+..+ ++|+.|++++|.+...+. . +.. ..+|+.|++++|.+.+.....
T Consensus 99 ~l~~---------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 99 ELVK---------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp HHHH---------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HHHH---------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 1111 01111 378899999999865543 2 333 259999999999987444333
Q ss_pred h---hhcCc-cceEEEecCCccccccccc------cc-cCCcEEEeeCCccccc----cCchhhhcCCCceEEEeecCcc
Q 042610 147 L---LENNT-KLELLYLVNNSFSGFQLTS------AQ-HGLLSLDISSNSFTGE----LPQNMDIVLPKLVYMNVSKNSF 211 (351)
Q Consensus 147 ~---~~~~~-~L~~L~l~~~~l~~~~~~~------~~-~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 211 (351)
+ +...+ +|+.|++++|.+....... .. ++|++|++++|.+.+. ++..+....++|+.|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 2 23344 8999999998887653221 22 4777777777777632 3333332235677777777766
Q ss_pred cc
Q 042610 212 EG 213 (351)
Q Consensus 212 ~~ 213 (351)
.+
T Consensus 238 ~~ 239 (362)
T 3goz_A 238 HG 239 (362)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=4.8e-19 Score=147.93 Aligned_cols=178 Identities=20% Similarity=0.234 Sum_probs=149.3
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccccccc--ccccCCcEEEee
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT--SAQHGLLSLDIS 182 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~ 182 (351)
..+.++++++.+..+|..+. ++++.|++++|.+. .++...+..+++|+.|++++|.+...... ..++.|+.|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 56788999999988887655 58999999999998 45555567899999999999999887553 478899999999
Q ss_pred CCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEE
Q 042610 183 SNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDL 262 (351)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 262 (351)
+|.+. .++...+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhH----------hccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 99998 666666668999999999999988443333 3456689999999999988777788899999999
Q ss_pred EccCCcccccCCCCccCCCCCcEEEccCcccccC
Q 042610 263 DISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGN 296 (351)
Q Consensus 263 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 296 (351)
++++|.+.+..+..+..+++|++|++++|++...
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999977777889999999999999999855
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=3.2e-20 Score=161.99 Aligned_cols=230 Identities=16% Similarity=0.143 Sum_probs=173.7
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEee
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDIS 182 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~ 182 (351)
.++.++++++.+...+..+..+++|+.|++++|.+.+......+..+++|++|++++|.+..... ...+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 67888888888866665677789999999999998644233446789999999999998775322 3468999999999
Q ss_pred CC-ccccc-cCchhhhcCCCceEEEeecC-ccccCCCCCccccccchhhhcCcc-ccceeeeccc--ccc-ccccccccC
Q 042610 183 SN-SFTGE-LPQNMDIVLPKLVYMNVSKN-SFEGNIPSSIGKMQGLLATYMNMT-QLWALYLHND--NFS-RKIKDGLLR 255 (351)
Q Consensus 183 ~~-~~~~~-~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~~~~ 255 (351)
+| .+.+. ++.. ...+++|+.|++++| .+++. .+...+..++ +|++|++++| .++ +.++..+..
T Consensus 151 ~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~---------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 151 GCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK---------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp TCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH---------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH---------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 99 56643 4433 347999999999999 77531 1123456678 9999999999 455 345556678
Q ss_pred CCCccEEEccCCc-ccccCCCCccCCCCCcEEEccCcc-cccCcchhhhcccCCceeecCCCccccccccccccCcccEE
Q 042610 256 STELEDLDISNNI-LSGHIPSWMGNFSHLHTLSMSNNH-LEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACL 333 (351)
Q Consensus 256 ~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l 333 (351)
+++|+.|++++|. +++..+..+..+++|++|++++|. +.......++.+++|+.|++++| +.......+ ..++..|
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l-~~~l~~L 298 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL-KEALPHL 298 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH-HHHSTTS
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH-HhhCcce
Confidence 8999999999998 776777788999999999999995 43333346888999999999999 443222222 1346666
Q ss_pred EccCccccccccc
Q 042610 334 YLQNNALGDRFVK 346 (351)
Q Consensus 334 ~l~~n~~~~~~p~ 346 (351)
++.+|.+++..|.
T Consensus 299 ~l~~n~l~~~~~~ 311 (336)
T 2ast_B 299 QINCSHFTTIARP 311 (336)
T ss_dssp EESCCCSCCTTCS
T ss_pred EEecccCccccCC
Confidence 7899999998885
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=7e-20 Score=157.94 Aligned_cols=224 Identities=17% Similarity=0.145 Sum_probs=163.7
Q ss_pred CccEEEccCccccccCCc---cccCCCCCcEEEccCCcCCCCCchhh--ccCCCCCeEEeecccccCCCcc--hhhhccc
Q 042610 6 NLFELNFGGNKFEGHLPQ---CLNNLTHLKVLDVSSNKLSGILPSVI--ANLTSLEYLALYDNRFKGRLFS--FYSLANL 78 (351)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~--~~~l~~l 78 (351)
.++.+.+.++.+...... .+..+++|++|++++|++.+..|..+ ..+++|++|++++|.+.+.... ...+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467778877766421111 12235679999999998887877777 7888999999999887652221 1233468
Q ss_pred ccccccccccccccceeeecCcCCccceeEEEcCCCCCCc---C--CchhhcCCCceEEEccCcccCCCcChh---hhhc
Q 042610 79 SKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGA---I--PNFLLLQFNLKYLDLSHNKLAGNFPTW---LLEN 150 (351)
Q Consensus 79 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~--~~~~~~~~~L~~l~l~~~~~~~~~~~~---~~~~ 150 (351)
++|+.+++..+.. .......+..+++|++|++++|.+.. + +..+..+++|++|++++|.++ .++.. ++..
T Consensus 145 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 8888888887764 33444567788899999999998733 2 233467889999999999986 44442 4567
Q ss_pred CccceEEEecCCccccccc--ccc---ccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccc
Q 042610 151 NTKLELLYLVNNSFSGFQL--TSA---QHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGL 225 (351)
Q Consensus 151 ~~~L~~L~l~~~~l~~~~~--~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 225 (351)
+++|++|++++|.+....+ ... +++|++|++++|++. .+|..+. ++|+.|++++|.+++ +|.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~-~~~-------- 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNR-APQ-------- 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCS-CCC--------
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCC-Cch--------
Confidence 8999999999999987632 222 379999999999998 8887763 799999999999874 222
Q ss_pred hhhhcCccccceeeeccccccc
Q 042610 226 LATYMNMTQLWALYLHNDNFSR 247 (351)
Q Consensus 226 ~~~~~~~~~L~~L~l~~~~~~~ 247 (351)
+..+++|+.|++++|.+.+
T Consensus 290 ---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ---TTSCCCCSCEECSSTTTSC
T ss_pred ---hhhCCCccEEECcCCCCCC
Confidence 2345789999999998865
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=6.6e-19 Score=146.01 Aligned_cols=193 Identities=16% Similarity=0.145 Sum_probs=155.1
Q ss_pred ceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcc-cCCCcChhhhhcCccceEEEecC-Ccccccccc--ccccCCcEE
Q 042610 105 QLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNK-LAGNFPTWLLENNTKLELLYLVN-NSFSGFQLT--SAQHGLLSL 179 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~--~~~~~L~~L 179 (351)
.++.|+++++++..++. .+..+++|+.+++++|. +. .++...+..+++|+.|++++ |.+..++.. ..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 78999999999988865 78889999999999997 66 77766678899999999998 888887643 378899999
Q ss_pred EeeCCccccccCchhhhcCCCce---EEEeecC-ccccCCCCCccccccchhhhcCccccc-eeeecccccccccccccc
Q 042610 180 DISSNSFTGELPQNMDIVLPKLV---YMNVSKN-SFEGNIPSSIGKMQGLLATYMNMTQLW-ALYLHNDNFSRKIKDGLL 254 (351)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~ 254 (351)
++++|.+. .+|. +..+++|+ .|++++| .+.+..+.. +..+++|+ +|++++|.+.......+.
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~----------~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNA----------FQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTT----------TTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCccc----------ccchhcceeEEEcCCCCCcccCHhhcC
Confidence 99999988 5776 33677777 9999999 776433333 34566899 999999998744444444
Q ss_pred CCCCccEEEccCCc-ccccCCCCccCC-CCCcEEEccCcccccCcchhhhcccCCceeecCCC
Q 042610 255 RSTELEDLDISNNI-LSGHIPSWMGNF-SHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISEN 315 (351)
Q Consensus 255 ~~~~L~~L~l~~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 315 (351)
. ++|+.|++++|. +++..+..+..+ ++|++|++++|.+.+ +|.. .+++|+.|++.++
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 4 899999999995 886667788899 999999999999984 4443 5788999998876
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=4.6e-18 Score=149.02 Aligned_cols=201 Identities=17% Similarity=0.199 Sum_probs=121.0
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccc
Q 042610 8 FELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLS 87 (351)
Q Consensus 8 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~ 87 (351)
++++-++++++ .+|..+ .+++++|++++|+++.+.+.+|.++++|++|++++|.+.+ ......+.+++++..+...
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcc
Confidence 56777777887 677655 3689999999999997666789999999999999998754 2333345566665554444
Q ss_pred cccccceeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcC-ccceEEEecCCccc
Q 042610 88 METDLLQVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENN-TKLELLYLVNNSFS 165 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~ 165 (351)
.+..........+..+++|++|++++|.+..++. .+....++..+++.++.....++...+..+ ..++.|++++|.+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 3333444444555666666666666666655543 233344556666654332224444333333 34666666666666
Q ss_pred cccccc-cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccc
Q 042610 166 GFQLTS-AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFE 212 (351)
Q Consensus 166 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 212 (351)
.++... ...+|+++.+.++...+.+|..++..+++|+.|++++|.++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 553322 33456666665433222555555555666666666666655
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.9e-18 Score=140.06 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=82.6
Q ss_pred CCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccccccc
Q 042610 175 GLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL 254 (351)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 254 (351)
.|++|++++|.+. .++...+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGV----------FNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhh----------cCCCCCcCEEECCCCcCCccCHhHhc
Confidence 3444444444443 333333334555555555555544221111 22334555555555555544444455
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEE
Q 042610 255 RSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLY 334 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~ 334 (351)
.+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .+++|++++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~ 171 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLS 171 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHH
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHH
Confidence 56666666666666664444445666666666666666664444455666666666666665443 245566666
Q ss_pred ccCcccccccc
Q 042610 335 LQNNALGDRFV 345 (351)
Q Consensus 335 l~~n~~~~~~p 345 (351)
+..|+++|.+|
T Consensus 172 ~~~n~~~g~ip 182 (208)
T 2o6s_A 172 EWINKHSGVVR 182 (208)
T ss_dssp HHHHHCTTTBB
T ss_pred HHHHhCCceee
Confidence 66666666666
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=7.5e-18 Score=136.54 Aligned_cols=171 Identities=20% Similarity=0.262 Sum_probs=91.1
Q ss_pred EEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccccccc--ccccCCcEEEeeCCc
Q 042610 108 VLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLT--SAQHGLLSLDISSNS 185 (351)
Q Consensus 108 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~ 185 (351)
.++..++.+..+|..+ .++++.|++++|.+. .++...+..+++|+.|++++|.+..++.. ..++.|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4556666666666543 347788888877776 55555556677777777777776654331 234555555555555
Q ss_pred cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEcc
Q 042610 186 FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDIS 265 (351)
Q Consensus 186 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (351)
+. .++...+..+++|+.|++++|.+. +..+..+..+++|+.|+++
T Consensus 88 l~-~~~~~~~~~l~~L~~L~L~~N~l~----------------------------------~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 88 LQ-SLPNGVFDKLTQLKELALNTNQLQ----------------------------------SLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCC----------------------------------CCCTTTTTTCTTCCEEECC
T ss_pred CC-ccCHhHhcCccCCCEEEcCCCcCc----------------------------------ccCHhHhccCCcCCEEECC
Confidence 54 334333334555555555555544 3333333444455555555
Q ss_pred CCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccc
Q 042610 266 NNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMIS 323 (351)
Q Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 323 (351)
+|.+++..+..+..+++|++|++++|.+.. .++.|+.|++..|.+++..+.
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred CCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence 555543333334445555555555554432 233455555555555544443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=2.3e-17 Score=152.26 Aligned_cols=184 Identities=27% Similarity=0.395 Sum_probs=144.6
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCC
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSN 184 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 184 (351)
+++.|+++++.+..+|..+. ++|+.|++++|.+. .+| ..+++|+.|++++|.+..++. ...+|+.|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCC
Confidence 78899999999888887553 68999999999988 777 347899999999999888655 3338999999999
Q ss_pred ccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEc
Q 042610 185 SFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDI 264 (351)
Q Consensus 185 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 264 (351)
.+. .+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+.+ ++. +. ++|+.|++
T Consensus 131 ~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~-------------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 131 QLT-MLPE----LPALLEYINADNNQLTM-LPE-------------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp CCS-CCCC----CCTTCCEEECCSSCCSC-CCC-------------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred cCC-CCCC----cCccccEEeCCCCccCc-CCC-------------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 888 4776 47899999999998874 443 23578899999988876 444 44 88999999
Q ss_pred cCCcccccCCCCccCCCCC-------cEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc
Q 042610 265 SNNILSGHIPSWMGNFSHL-------HTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL 325 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 325 (351)
++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 999888 6666 543 67 99999999988 577777779999999999999887666555
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.7e-17 Score=141.41 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=139.2
Q ss_pred EcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccc
Q 042610 110 SLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGE 189 (351)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~ 189 (351)
.+....+..+. ....+++|+.+++++|.+. .++. +..+++|+.|++++|.+........+++|+.|++++|.+. .
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~ 104 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-D 104 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-C
T ss_pred HhcCCCccccc-chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC-C
Confidence 44554443332 2456778999999998887 5554 5678999999999999888776677888999999988887 4
Q ss_pred cCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcc
Q 042610 190 LPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNIL 269 (351)
Q Consensus 190 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (351)
++. + ..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 105 ~~~-l-~~l~~L~~L~L~~n~i~~-~~-----------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 105 LSS-L-KDLKKLKSLSLEHNGISD-IN-----------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp GGG-G-TTCTTCCEEECTTSCCCC-CG-----------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred Chh-h-ccCCCCCEEECCCCcCCC-Ch-----------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 443 3 368889999998888763 11 244566888888888887765 4567788888888888888
Q ss_pred cccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccc
Q 042610 270 SGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 270 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++...+.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 74433 7788888888888888874 33 37788888888888888776444
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=135.09 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=104.5
Q ss_pred ceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCcc
Q 042610 154 LELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMT 233 (351)
Q Consensus 154 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (351)
-+.++++++.+..++. .....++.|++++|.+.+..+...+..+++|+.|++++|.+++..+..+ ..++
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~----------~~l~ 81 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF----------EGAS 81 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT----------TTCT
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh----------CCCC
Confidence 3577788877776532 3345567788888777743344444567778888887777764333333 3445
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecC
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (351)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 67777777777766666666677777777777777776666667777777777777777776666777777777777777
Q ss_pred CCcccc
Q 042610 314 ENNLSG 319 (351)
Q Consensus 314 ~n~~~~ 319 (351)
+|.+..
T Consensus 162 ~N~l~c 167 (220)
T 2v70_A 162 ANPFNC 167 (220)
T ss_dssp SCCEEC
T ss_pred CcCCcC
Confidence 776654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=5.7e-17 Score=142.08 Aligned_cols=221 Identities=16% Similarity=0.111 Sum_probs=145.1
Q ss_pred cceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcCccceE-EEecCCcccccccc--ccccCCcEE
Q 042610 104 FQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLEL-LYLVNNSFSGFQLT--SAQHGLLSL 179 (351)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~l~~~~~~--~~~~~L~~L 179 (351)
..++.|++++|+++.+|. .+..+++|+.|++++|.+.+.++...+.+++++.. +.+..|++..++.. ..+++|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 368888888888888875 57788888888888888765677666677777665 45556777776432 367888888
Q ss_pred EeeCCccccccCchhhhcCCCceEEEeecC-ccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCC
Q 042610 180 DISSNSFTGELPQNMDIVLPKLVYMNVSKN-SFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTE 258 (351)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 258 (351)
++++|++. .++...+.....+..+++..+ .+....+..+..+ ...++.|++++|.+.+.... .....+
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~---------~~~l~~L~L~~N~i~~i~~~-~f~~~~ 178 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL---------SFESVILWLNKNGIQEIHNS-AFNGTQ 178 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS---------BSSCEEEECCSSCCCEECTT-SSTTEE
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhc---------chhhhhhccccccccCCChh-hccccc
Confidence 88888887 555444435566777777654 3432222222221 23577888888888754433 334567
Q ss_pred ccEEEccC-CcccccCC-CCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCcccEEEcc
Q 042610 259 LEDLDISN-NILSGHIP-SWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQ 336 (351)
Q Consensus 259 L~~L~l~~-~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~ 336 (351)
++.+++.+ +.+. .+| ..|..+++|++|++++|+++...+..+. +|+.|.+.++.-....|..-.+++|+.+++.
T Consensus 179 L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 179 LDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp EEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred hhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 88888876 4455 554 4678888899999999888844444444 4555554444333334433378888888887
Q ss_pred Ccc
Q 042610 337 NNA 339 (351)
Q Consensus 337 ~n~ 339 (351)
++.
T Consensus 255 ~~~ 257 (350)
T 4ay9_X 255 YPS 257 (350)
T ss_dssp CHH
T ss_pred CCc
Confidence 754
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=4e-17 Score=130.99 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=105.9
Q ss_pred cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccc
Q 042610 172 AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKD 251 (351)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 251 (351)
.++.|+.|+++++.+. .++ .+ ..+++|+.|++++|.+.. +. .+..+++|++|++++|.+.+..+.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~~--~~----------~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHATN--YN----------PISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCSC--CG----------GGTTCTTCCEEEEECTTCBGGGSC
T ss_pred hcCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCCc--ch----------hhhcCCCCCEEEeECCccCcccCh
Confidence 4455555666555555 444 22 256677777777764431 11 234456777777777777766667
Q ss_pred cccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcc-cccCcchhhhcccCCceeecCCCccccccccccccCcc
Q 042610 252 GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNH-LEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSV 330 (351)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L 330 (351)
.+..+++|+.|++++|.+++..+..++.+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+.. ....+++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKL 183 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCC
Confidence 77788888899998888887677778888899999999987 55 455 5788899999999999888743 22278889
Q ss_pred cEEEccCccccc
Q 042610 331 ACLYLQNNALGD 342 (351)
Q Consensus 331 ~~l~l~~n~~~~ 342 (351)
++|++++|++.+
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999999998864
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.8e-17 Score=138.65 Aligned_cols=170 Identities=26% Similarity=0.324 Sum_probs=113.5
Q ss_pred CCCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+..
T Consensus 45 l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------------- 104 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---------------- 104 (291)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------------
T ss_pred cCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC----------------
Confidence 345555555555554 222 24555555555555555554322 5555555555555555432
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCc
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNS 163 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 163 (351)
...+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.
T Consensus 105 -------------~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 105 -------------LSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp -------------GGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSC
T ss_pred -------------ChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCC-cch--hhccCCCCCEEEccCCc
Confidence 11245566788888888888766 35777888888888888887 443 25678888888888888
Q ss_pred cccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCcccc
Q 042610 164 FSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEG 213 (351)
Q Consensus 164 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 213 (351)
+........+++|+.|++++|.+. .++. + ..+++|+.|++++|.+..
T Consensus 168 l~~~~~l~~l~~L~~L~L~~N~i~-~l~~-l-~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 ISDIVPLAGLTKLQNLYLSKNHIS-DLRA-L-AGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCC-BCGG-G-TTCTTCSEEEEEEEEEEC
T ss_pred cccchhhcCCCccCEEECCCCcCC-CChh-h-ccCCCCCEEECcCCcccC
Confidence 887766667888888888888887 4543 3 368889999998888764
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.8e-17 Score=151.70 Aligned_cols=168 Identities=23% Similarity=0.304 Sum_probs=109.0
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCC
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSN 184 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 184 (351)
+|+.|++++|.+..+| ..+++|+.|++++|.++ .+|. + .. +|+.|++++|.++.++. .+++|+.|++++|
T Consensus 81 ~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 81 QITVLEITQNALISLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLDVDNNQLTMLPE--LPALLEYINADNN 150 (571)
T ss_dssp TCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred CCCEEECcCCCCcccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEECCCCcCCCCCC--cCccccEEeCCCC
Confidence 4566666666666555 23456666666666665 3554 2 22 66666666666666544 5566666666666
Q ss_pred ccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCc-----
Q 042610 185 SFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTEL----- 259 (351)
Q Consensus 185 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----- 259 (351)
.+. .+|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.+. .++. +.. +|
T Consensus 151 ~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 151 QLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE 207 (571)
T ss_dssp CCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC------------TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred ccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh------------CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence 666 3554 35677777777776653 443 21 46777777777666 3333 332 56
Q ss_pred --cEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccC
Q 042610 260 --EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAG 306 (351)
Q Consensus 260 --~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 306 (351)
+.|++++|.++ .+|..+..+++|+.|++++|++.+..|..+..++.
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 99999999988 67887778999999999999998888887766543
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=7.9e-17 Score=132.38 Aligned_cols=107 Identities=25% Similarity=0.285 Sum_probs=50.1
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecC
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (351)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|+.|+++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 3444444444443333333444445555555555544333333444555555555555544 444444445555555555
Q ss_pred CCcccccccccc-ccCcccEEEccCcccc
Q 042610 314 ENNLSGSMISTL-NLSSVACLYLQNNALG 341 (351)
Q Consensus 314 ~n~~~~~~~~~~-~~~~L~~l~l~~n~~~ 341 (351)
+|.+...++..+ .+++|++|++.+|++.
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555544443333 4455555555555543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.8e-17 Score=132.30 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=84.7
Q ss_pred eEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccc
Q 042610 155 ELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQ 234 (351)
Q Consensus 155 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (351)
+.++++++.+..++. ...+.++.|++++|.+. .++...+..+++|+.|++++|.+.+..|..+. .+++
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~----------~l~~ 81 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ----------GLRS 81 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTT----------TCSS
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh----------CCcC
Confidence 456666666665532 22356666666666666 44443333566666666666666543343332 3335
Q ss_pred cceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCC
Q 042610 235 LWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISE 314 (351)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 314 (351)
|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 56666666655544444455555666666666655544455555556666666666655544444555555566666665
Q ss_pred Cccc
Q 042610 315 NNLS 318 (351)
Q Consensus 315 n~~~ 318 (351)
|.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 5543
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=6e-17 Score=151.05 Aligned_cols=174 Identities=20% Similarity=0.271 Sum_probs=122.5
Q ss_pred cCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEE
Q 042610 100 CLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSL 179 (351)
Q Consensus 100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L 179 (351)
...+..|+.|+++++.+..++ .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+..++....++.|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 345567888888888887776 4777888888888888887 4444 56788888888888888877666677788888
Q ss_pred EeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCc
Q 042610 180 DISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTEL 259 (351)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 259 (351)
++++|.+. .++ .+ ..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|
T Consensus 115 ~Ls~N~l~-~l~-~l-~~l~~L~~L~Ls~N~l~~l------------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 115 SLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp ECTTSCCC-CCG-GG-GGCTTCSEEECCSSCCCCC------------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred EecCCCCC-CCc-cc-cCCCccCEEECCCCccCCc------------hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence 88888776 343 23 3677888888887776531 123455677777777777665544 6667777
Q ss_pred cEEEccCCcccccCCCCccCCCCCcEEEccCcccccC
Q 042610 260 EDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGN 296 (351)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 296 (351)
+.|++++|.+.+ + ..+..+++|+.|++++|++.+.
T Consensus 178 ~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 777777777663 2 2466677777777777776643
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=5.5e-17 Score=142.74 Aligned_cols=173 Identities=23% Similarity=0.245 Sum_probs=79.1
Q ss_pred eEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc---cccCCcEEEeeCCccccccCchhhhcCCCceEEEe
Q 042610 130 KYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS---AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNV 206 (351)
Q Consensus 130 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 206 (351)
+.++++++.+. .+|..+ .+.++.|++++|.+..+.... .++.|+.|++++|.+. .++...+..+++|+.|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 46677766666 566532 344666666666666543321 4455555555555555 333332334555555555
Q ss_pred ecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCc---cCCCCC
Q 042610 207 SKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWM---GNFSHL 283 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L 283 (351)
++|.+....+.. +..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+ ..+++|
T Consensus 96 s~N~l~~~~~~~----------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 96 SSNHLHTLDEFL----------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp CSSCCCEECTTT----------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCcCCcCCHHH----------hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 555544222211 1223344444444444444444444444444444444444442111112 234444
Q ss_pred cEEEccCcccccCcchhhhcccC--CceeecCCCcc
Q 042610 284 HTLSMSNNHLEGNIPVQCQNLAG--LYIPDISENNL 317 (351)
Q Consensus 284 ~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~ 317 (351)
+.|++++|.+....+..+..++. ++.|++++|.+
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 44444444444333333444433 24444444443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=129.13 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=123.6
Q ss_pred ceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc---cccccCCcEEEeeCCccccccCchhhhcCCCceEEE
Q 042610 129 LKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL---TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMN 205 (351)
Q Consensus 129 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 205 (351)
-+.++++++.+. .+|..+ .+.++.|++++|.+..... ...++.|+.|++++|.+. .++...+..+++|+.|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEE
Confidence 358889988887 777643 4567899999999888743 347889999999999988 55554445889999999
Q ss_pred eecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcE
Q 042610 206 VSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHT 285 (351)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 285 (351)
+++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++
T Consensus 88 Ls~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 88 LTSNRLENVQHKM----------FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp CCSSCCCCCCGGG----------GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCccCccCHhH----------hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 9999887544433 445668999999999998888888888999999999999998777888999999999
Q ss_pred EEccCcccccC
Q 042610 286 LSMSNNHLEGN 296 (351)
Q Consensus 286 L~l~~~~~~~~ 296 (351)
|++++|++...
T Consensus 158 L~L~~N~l~c~ 168 (220)
T 2v70_A 158 LNLLANPFNCN 168 (220)
T ss_dssp EECCSCCEECS
T ss_pred EEecCcCCcCC
Confidence 99999988754
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-16 Score=127.85 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=90.7
Q ss_pred ccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcC
Q 042610 152 TKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMN 231 (351)
Q Consensus 152 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (351)
++|+.|++++|.+..++....++.|++|++++|.+. .++ .+ ..+++|+.|++++|.+.+..+..++ .
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~----------~ 110 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-PI-SGLSNLERLRIMGKDVTSDKIPNLS----------G 110 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-GG-TTCTTCCEEEEECTTCBGGGSCCCT----------T
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-hh-hcCCCCCEEEeECCccCcccChhhc----------C
Confidence 344444444444443333333444444444444332 221 22 2456666666666666543443332 3
Q ss_pred ccccceeeeccccccccccccccCCCCccEEEccCCc-ccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCcee
Q 042610 232 MTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNI-LSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIP 310 (351)
Q Consensus 232 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 310 (351)
+++|+.|++++|.+.+..+..+..+++|+.|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+..+++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 3466677777766666666667778888888888887 55 444 57888899999999998874 33 67888999999
Q ss_pred ecCCCcccc
Q 042610 311 DISENNLSG 319 (351)
Q Consensus 311 ~l~~n~~~~ 319 (351)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999988754
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=2.9e-16 Score=146.44 Aligned_cols=172 Identities=22% Similarity=0.233 Sum_probs=97.4
Q ss_pred hcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccc
Q 042610 75 LANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKL 154 (351)
Q Consensus 75 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L 154 (351)
+..+++|+.|++..+.... ...+..+++|+.|++++|.+..++. +..+++|+.|++++|.+. .++. +..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLSS--LKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC---CTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCTT--STTCTTC
T ss_pred hhcCCCCCEEECcCCCCCC---ChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-CChh--hccCCCC
Confidence 3445555566555444221 1234555666666666666655554 556666666666666665 3332 4556666
Q ss_pred eEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccc
Q 042610 155 ELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQ 234 (351)
Q Consensus 155 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (351)
+.|++++|.+..++....++.|+.|++++|.+. .+ ..+ ..+++|+.|++++|.+.+..| +..+++
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~-~l-~~l-~~l~~L~~L~Ls~N~l~~~~~------------l~~l~~ 176 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DI-TVL-SRLTKLDTLSLEDNQISDIVP------------LAGLTK 176 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC-CC-GGG-GSCTTCSEEECCSSCCCCCGG------------GTTCTT
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccC-Cc-hhh-cccCCCCEEECcCCcCCCchh------------hccCCC
Confidence 666666666666555556666666666666665 33 222 256666666666666553222 234456
Q ss_pred cceeeeccccccccccccccCCCCccEEEccCCccc
Q 042610 235 LWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILS 270 (351)
Q Consensus 235 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (351)
|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 177 L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 177 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 66666666666543 23555666666666666665
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.5e-16 Score=127.64 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=113.4
Q ss_pred eEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEeeCCccccccCchhhhcCCCceEEEee
Q 042610 130 KYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVS 207 (351)
Q Consensus 130 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 207 (351)
+.++++++.+. .+|..+ .++++.|++++|.+..++. ...+++|+.|++++|.+.+..+..+ ..+++|+.|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECC
Confidence 56778887777 777643 3678888888888887653 3467888888888888874334444 478888888888
Q ss_pred cCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEE
Q 042610 208 KNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLS 287 (351)
Q Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 287 (351)
+|.+.. +|.. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 89 ~N~l~~-l~~~---------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 89 GNKITE-LPKS---------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCCC-CCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCcCCc-cCHh---------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 888873 3332 134556888888888888887777788888888888888888866666788888888888
Q ss_pred ccCccccc
Q 042610 288 MSNNHLEG 295 (351)
Q Consensus 288 l~~~~~~~ 295 (351)
+++|++..
T Consensus 159 L~~N~~~c 166 (220)
T 2v9t_B 159 LAQNPFIC 166 (220)
T ss_dssp CCSSCEEC
T ss_pred eCCCCcCC
Confidence 88888763
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.7e-16 Score=137.78 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=177.8
Q ss_pred CCCCCcEEEccCCcCCCCCchhhcc-CCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCC---
Q 042610 27 NLTHLKVLDVSSNKLSGILPSVIAN-LTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLP--- 102 (351)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~--- 102 (351)
.+++++.|.+++.- .......+.. +++|+.|++++|.+.........+ +.+.......+ ..+...+..
T Consensus 23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEET
T ss_pred hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhccccc
Confidence 36678888888642 2121223444 788999999999876211111111 11111111111 233344555
Q ss_pred -----ccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcc----cccc--cc
Q 042610 103 -----TFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSF----SGFQ--LT 170 (351)
Q Consensus 103 -----~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l----~~~~--~~ 170 (351)
+.+|+.+++.. ++..+++ .|..+++|+.+++.++.+. .++...|..+.++..+....... ..+. ..
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 77888888877 7766653 5777778888888877776 66666666666666665544221 1110 01
Q ss_pred ccccCCc-EEEeeCCccccccCchhhh---cCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccc
Q 042610 171 SAQHGLL-SLDISSNSFTGELPQNMDI---VLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFS 246 (351)
Q Consensus 171 ~~~~~L~-~L~l~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 246 (351)
.....|+ .+.+.... .++..++. .+.+++.+.+.+.-.. .........+++|+.+++.++.+.
T Consensus 173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~----------~~~~~l~~~~~~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN----------ADFKLIRDYMPNLVSLDISKTNAT 239 (329)
T ss_dssp EESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH----------HHHHHHHHHCTTCCEEECTTBCCC
T ss_pred ccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH----------HHHHHHHHhcCCCeEEECCCCCcc
Confidence 1233343 33333221 11222211 2345555555543111 001112234778999999998888
Q ss_pred ccccccccCCCCccEEEccCCcccccCCCCccCCCCCc-EEEccCcccccCcchhhhcccCCceeecCCCcccccccccc
Q 042610 247 RKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLH-TLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL 325 (351)
Q Consensus 247 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 325 (351)
......|..+.+|+.+++.++ +......+|.++.+|+ .+.++. .+....+.+|..|++|+.+++.+|.++......|
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 777788999999999999987 6656677899999999 999998 6776677889999999999999999999888888
Q ss_pred -ccCcccEEEc
Q 042610 326 -NLSSVACLYL 335 (351)
Q Consensus 326 -~~~~L~~l~l 335 (351)
++++|++++.
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 8999999874
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.4e-16 Score=133.75 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=87.1
Q ss_pred hhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCce
Q 042610 123 LLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLV 202 (351)
Q Consensus 123 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 202 (351)
+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+.+....++.|+.|++++|++. .++... . ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK-NLNGIP--S-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCS-CCTTCC--C-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccC-CcCccc--c-Cccc
Confidence 334444455555444444 3331 3344445555555544444433334444555555555444 333221 1 5666
Q ss_pred EEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCC
Q 042610 203 YMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSH 282 (351)
Q Consensus 203 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 282 (351)
.|++++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++
T Consensus 110 ~L~L~~N~l~~-~~-----------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~ 173 (263)
T 1xeu_A 110 RLFLDNNELRD-TD-----------SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173 (263)
T ss_dssp EEECCSSCCSB-SG-----------GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCC
T ss_pred EEEccCCccCC-Ch-----------hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCC
Confidence 66666665542 11 133455666666666666554 2467788899999999988855 56788899
Q ss_pred CcEEEccCcccccC
Q 042610 283 LHTLSMSNNHLEGN 296 (351)
Q Consensus 283 L~~L~l~~~~~~~~ 296 (351)
|+.|++++|++.+.
T Consensus 174 L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 174 VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEEEEEEEEECC
T ss_pred CCEEeCCCCcccCC
Confidence 99999999988755
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=4.6e-16 Score=136.82 Aligned_cols=174 Identities=26% Similarity=0.232 Sum_probs=139.3
Q ss_pred eEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhh-cCccceEEEecCCccccccc--cccccCCcEEEeeC
Q 042610 107 KVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLE-NNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDISS 183 (351)
Q Consensus 107 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~ 183 (351)
+.++++++.+..+|..+.. .++.|++++|.+. .++...+. .+++|+.|++++|.+..+.. ...+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4788888888888875543 6899999999998 66665555 88999999999999988764 34788999999999
Q ss_pred CccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccc---cCCCCcc
Q 042610 184 NSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGL---LRSTELE 260 (351)
Q Consensus 184 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~ 260 (351)
|++. .++...+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+.....+ ..+++|+
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~----------~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF----------EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTT----------TTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHh----------CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 9998 6666666689999999999999986555544 455689999999999987655545 5689999
Q ss_pred EEEccCCcccccCCCCccCCCC--CcEEEccCcccc
Q 042610 261 DLDISNNILSGHIPSWMGNFSH--LHTLSMSNNHLE 294 (351)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~ 294 (351)
.|++++|.+.+..+..+..++. ++.|++++|++.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999999998544456667776 488999999987
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=2.7e-16 Score=131.92 Aligned_cols=172 Identities=19% Similarity=0.233 Sum_probs=130.0
Q ss_pred CCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEE
Q 042610 126 QFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMN 205 (351)
Q Consensus 126 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 205 (351)
+.++..++++++.+. .++. +..+++|+.|++++|.+..++....++.|+.|++++|.+. .++. +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEE
Confidence 446777778888877 5553 5678899999999999888876668888999999999887 4544 34788999999
Q ss_pred eecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcE
Q 042610 206 VSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHT 285 (351)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 285 (351)
+++|.+.+ ++.. .. ++|+.|++++|.+.+. +.+..+++|+.|++++|.+++. + .++.+++|++
T Consensus 92 L~~N~l~~-l~~~-----------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~ 154 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-----------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEV 154 (263)
T ss_dssp CCSSCCSC-CTTC-----------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCE
T ss_pred CCCCccCC-cCcc-----------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCE
Confidence 99988864 3221 11 5788888888887764 3477788888888888888743 3 5777888888
Q ss_pred EEccCcccccCcchhhhcccCCceeecCCCccccccc
Q 042610 286 LSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMI 322 (351)
Q Consensus 286 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (351)
|++++|.+.+. ..+..+++|+.|++++|.+...+.
T Consensus 155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp EECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred EECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 88888888755 567778888888888888776543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=9.9e-18 Score=155.35 Aligned_cols=203 Identities=16% Similarity=0.095 Sum_probs=132.8
Q ss_pred CCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcc-------------cCCCcChhhhhcCccceEEE-ecCCcccc
Q 042610 101 LPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNK-------------LAGNFPTWLLENNTKLELLY-LVNNSFSG 166 (351)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~-------------~~~~~~~~~~~~~~~L~~L~-l~~~~l~~ 166 (351)
..++.|+.|+++++.+..+|..+..+++|+.|+++++. ..+..| ..++.+++|+.|+ +..+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhcccch
Confidence 45567777788887777778888888888887776543 121122 2234555555555 33332221
Q ss_pred ccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccc
Q 042610 167 FQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFS 246 (351)
Q Consensus 167 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 246 (351)
|..+.+.+|.+. .+ ....|+.|++++|.+++ +|. + ..+++|+.|++++|.+.
T Consensus 425 ---------L~~l~l~~n~i~-~l------~~~~L~~L~Ls~n~l~~-lp~-~----------~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 425 ---------LRSKFLLENSVL-KM------EYADVRVLHLAHKDLTV-LCH-L----------EQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp ---------HHHHHHHHHHHH-HH------HHTTCSEEECTTSCCSS-CCC-G----------GGGTTCCEEECCSSCCC
T ss_pred ---------hhhhhhhccccc-cc------CccCceEEEecCCCCCC-CcC-c----------cccccCcEeecCccccc
Confidence 222222222222 11 12346777777777663 332 3 23456777777777776
Q ss_pred ccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCc-chhhhcccCCceeecCCCcccccccccc
Q 042610 247 RKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNI-PVQCQNLAGLYIPDISENNLSGSMISTL 325 (351)
Q Consensus 247 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 325 (351)
.+|..++.+++|+.|++++|.+++ +| .++.+++|++|++++|.+.+.. |..+..+++|+.|++++|.+++.++...
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 556677788888888888888884 56 7888888999999988888665 8888888899999999988887665432
Q ss_pred ----ccCcccEEEc
Q 042610 326 ----NLSSVACLYL 335 (351)
Q Consensus 326 ----~~~~L~~l~l 335 (351)
.+|+|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 4788888764
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=3.6e-15 Score=122.42 Aligned_cols=151 Identities=21% Similarity=0.257 Sum_probs=78.5
Q ss_pred ceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--cccccCCcEEEeeCCccccccCchhhhcCCCceEEEe
Q 042610 129 LKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNV 206 (351)
Q Consensus 129 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 206 (351)
-+.++.+++.+. .+|..+ .++|+.|++++|.+..+.. ...+++|+.|++++|.+. .++...+..+++|+.|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence 445666665555 555432 3556666666666555422 123444555555555544 444333334445555555
Q ss_pred ecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEE
Q 042610 207 SKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTL 286 (351)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 286 (351)
++| .+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus 96 s~N----------------------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 96 GTN----------------------------------QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp CSS----------------------------------CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CCC----------------------------------cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 544 444433334445555555556555555 455555555566666
Q ss_pred EccCcccccCcchhhhcccCCceeecCCCcccc
Q 042610 287 SMSNNHLEGNIPVQCQNLAGLYIPDISENNLSG 319 (351)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 319 (351)
++++|.+.+..+..+..+++|+.|++.+|.+..
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 666665554444445555566666666555543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5.3e-18 Score=157.14 Aligned_cols=183 Identities=22% Similarity=0.228 Sum_probs=125.0
Q ss_pred cCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccc-----------cCCCcchhhhcccccccccc-ccccccc-
Q 042610 26 NNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRF-----------KGRLFSFYSLANLSKFEAFQ-LSMETDL- 92 (351)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----------~~~~~~~~~l~~l~~L~~l~-l~~~~~~- 92 (351)
..+++|+.|++++|++. .+|..+.++++|+.|++++|.. .........+..+++|+.++ +..+...
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45777888888888776 5677788888888887755420 00011123445566666665 2222100
Q ss_pred ------ceeeecCcCCccceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccc
Q 042610 93 ------LQVEIENCLPTFQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG 166 (351)
Q Consensus 93 ------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 166 (351)
.......+ +...|+.|++++|.+..+|. +..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.++.
T Consensus 425 L~~l~l~~n~i~~l-~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKM-EYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHH-HHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhccccccc-CccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC
Confidence 00000111 11258889999999988887 888899999999999988 78875 4788999999999998888
Q ss_pred ccccccccCCcEEEeeCCcccccc-CchhhhcCCCceEEEeecCccccC
Q 042610 167 FQLTSAQHGLLSLDISSNSFTGEL-PQNMDIVLPKLVYMNVSKNSFEGN 214 (351)
Q Consensus 167 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~ 214 (351)
++....+++|+.|++++|.+.+.. |..+. .+++|+.|++++|.+.+.
T Consensus 501 lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CGGGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGS
T ss_pred CcccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCC
Confidence 765567788888888888887433 66655 788888888888887643
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.9e-15 Score=131.16 Aligned_cols=287 Identities=13% Similarity=0.098 Sum_probs=188.4
Q ss_pred CCCccEEEccCccccccCCccccC-CCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcc-----
Q 042610 4 LKNLFELNFGGNKFEGHLPQCLNN-LTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLAN----- 77 (351)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~----- 77 (351)
+.+++.|.+++.--. .-...+.. +++|+.|+|++|++... ...-..++.++.+.+..+.+. ...+.+
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I~-----~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFVP-----AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEEC-----TTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEe-cCccccccccccccccccccC-----HHHhccccccc
Confidence 346788888875221 11123444 78999999999998721 111122333566666666443 234566
Q ss_pred ---cccccccccccccccceeeecCcCCccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCccc---CCCcChhhhhc
Q 042610 78 ---LSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKL---AGNFPTWLLEN 150 (351)
Q Consensus 78 ---l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~---~~~~~~~~~~~ 150 (351)
+++|+.+.+.. ....++...+..|.+|+.+++.++.+..++ ..+..+.++..+....... ...+....+..
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 88999998887 556677778999999999999999886664 4566666777776655221 11233333556
Q ss_pred Cccce-EEEecCCcc-cccc--ccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccch
Q 042610 151 NTKLE-LLYLVNNSF-SGFQ--LTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLL 226 (351)
Q Consensus 151 ~~~L~-~L~l~~~~l-~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 226 (351)
+..|+ .+.+..... .... .......++.+.+.+.-.. .....+...+++|+.+++.+|.+. .++.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~--------- 243 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPD--------- 243 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECT---------
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecH---------
Confidence 67776 455543211 1100 0113556677777654222 112223334789999999888776 3332
Q ss_pred hhhcCccccceeeeccccccccccccccCCCCcc-EEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhccc
Q 042610 227 ATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELE-DLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLA 305 (351)
Q Consensus 227 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 305 (351)
..|.++++|+++++.++ +.......|.++.+|+ .+++.+ .++...+..|.+|++|+.++++++.+....+.+|..++
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 23556678999999886 6666667888999999 999988 66656678899999999999999999877778899999
Q ss_pred CCceeec
Q 042610 306 GLYIPDI 312 (351)
Q Consensus 306 ~L~~L~l 312 (351)
+|+.++.
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 9998864
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=5.1e-15 Score=118.09 Aligned_cols=132 Identities=13% Similarity=0.242 Sum_probs=96.5
Q ss_pred CcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccC
Q 042610 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLR 255 (351)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 255 (351)
.+.++++++++. .+|..+. ++++.|++++|.+.+..+.. .+..+++|+.|++++|.+.+..+..+..
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDG---------LFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSC---------SGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CCEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCcc---------ccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 367888888886 7777653 48888888888876433321 1334557788888888777777777777
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccc
Q 042610 256 STELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGS 320 (351)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 320 (351)
+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+...
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 78888888888887766666677778888888888888777777777778888888888877653
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=4.8e-15 Score=115.65 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=82.0
Q ss_pred CCCceEEEeecCccc-cCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCC
Q 042610 198 LPKLVYMNVSKNSFE-GNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSW 276 (351)
Q Consensus 198 l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 276 (351)
+++|+.|++++|.+. +.+|..+. .+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA----------EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG----------GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCChhhHHHHHH----------hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH
Confidence 345555555555554 33333222 233556666666655444 45566677777777777776555655
Q ss_pred ccCCCCCcEEEccCcccccCc-chhhhcccCCceeecCCCccccccc---ccc-ccCcccEEEccCcccc
Q 042610 277 MGNFSHLHTLSMSNNHLEGNI-PVQCQNLAGLYIPDISENNLSGSMI---STL-NLSSVACLYLQNNALG 341 (351)
Q Consensus 277 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~~-~~~~L~~l~l~~n~~~ 341 (351)
+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+.++ ..+ .+++|++|++++|.+.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666777777777777776432 2566777777777777777776554 234 6777777777777765
No 123
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=6.8e-14 Score=124.51 Aligned_cols=290 Identities=13% Similarity=0.119 Sum_probs=143.3
Q ss_pred CccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccc------------
Q 042610 22 PQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSME------------ 89 (351)
Q Consensus 22 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~------------ 89 (351)
..+|.+|.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++ .....++.++..|+.+.+...
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK--MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce--EccchhhcccccchhhcccCceeeecceeeecc
Confidence 34556666666666653 244344456666666666666443 22 122233444444444333211
Q ss_pred --------cccceeeecCcCCccceeEEEcCCCCCCcCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEec
Q 042610 90 --------TDLLQVEIENCLPTFQLKVLSLPNCNLGAIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLV 160 (351)
Q Consensus 90 --------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 160 (351)
..........+..+.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+ +. .++...+..+..|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecC
Confidence 1112223334556666666666543 22232 34455566666666543 22 4444445566666666554
Q ss_pred CCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeee
Q 042610 161 NNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYL 240 (351)
Q Consensus 161 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 240 (351)
.+...-........+|+.+.+...- . .+....+..+..++.+.+..+... .... .+..+..++.+..
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~----------~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGS----------LFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSC----------TTTTCTTCCEEEE
T ss_pred CCceEeehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eecc----------ccccccccceecc
Confidence 4332211122234566666664322 1 333444446677777776554321 1111 1233344444444
Q ss_pred ccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccc
Q 042610 241 HNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGS 320 (351)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 320 (351)
....+. ...+..+.+|+.+.+.++ +......+|.++.+|+.+++..+ ++.....+|..|.+|+.+.+..+ ++..
T Consensus 284 ~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 284 GSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp CSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred Cceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 332221 223455566666666543 33233445666666666666543 44344455666666666666554 4444
Q ss_pred ccccc-ccCcccEEEccC
Q 042610 321 MISTL-NLSSVACLYLQN 337 (351)
Q Consensus 321 ~~~~~-~~~~L~~l~l~~ 337 (351)
...+| +|++|+++++..
T Consensus 358 ~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG
T ss_pred hHHHhhCCCCCCEEEECC
Confidence 45555 666666666644
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=1.2e-14 Score=113.36 Aligned_cols=132 Identities=23% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCccEEEccCcccc-ccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccc
Q 042610 5 KNLFELNFGGNKFE-GHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEA 83 (351)
Q Consensus 5 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 83 (351)
+++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+...... .
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~--~--------- 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM--L--------- 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH--H---------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH--H---------
Confidence 44555555555554 34444445555555555555555433 3445555555555555554321000 0
Q ss_pred cccccccccceeeecCcCCccceeEEEcCCCCCCcCC--chhhcCCCceEEEccCcccCCCcCh---hhhhcCccceEEE
Q 042610 84 FQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP--NFLLLQFNLKYLDLSHNKLAGNFPT---WLLENNTKLELLY 158 (351)
Q Consensus 84 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~ 158 (351)
+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+. ..+. ..+..+++|+.|+
T Consensus 91 ----------------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 91 ----------------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp ----------------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEET
T ss_pred ----------------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEec
Confidence 111224445555555554443 34445555555555555554 3332 2334455555555
Q ss_pred ecCCcccc
Q 042610 159 LVNNSFSG 166 (351)
Q Consensus 159 l~~~~l~~ 166 (351)
+..|.+..
T Consensus 154 l~~n~~~~ 161 (168)
T 2ell_A 154 GYDREDQE 161 (168)
T ss_dssp TEETTSCB
T ss_pred CCCCChhh
Confidence 55554443
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.5e-14 Score=112.56 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=67.8
Q ss_pred CcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccC
Q 042610 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLR 255 (351)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 255 (351)
.+.++++++++. .+|..+ .++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGV----------FDKLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTT----------TTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHH----------hcCcccccEEECCCCcceEeChhHccC
Confidence 456666666665 555433 356677777766665322221 223345555555555555444444455
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccc
Q 042610 256 STELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSG 319 (351)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 319 (351)
+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5555555555555553333344555555555555555553333334555555555555555544
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=5.9e-15 Score=112.72 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=57.4
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccC-cchhhhcccCCceeec
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGN-IPVQCQNLAGLYIPDI 312 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 312 (351)
+|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.+.+. .+..+..+++|++|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 444444444444433 3445556666666666666644555555566666666666666542 2355666666666666
Q ss_pred CCCccccccc---ccc-ccCcccEEEcc
Q 042610 313 SENNLSGSMI---STL-NLSSVACLYLQ 336 (351)
Q Consensus 313 ~~n~~~~~~~---~~~-~~~~L~~l~l~ 336 (351)
++|.+++.++ ..+ .+++|++|+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666665544 233 56666666654
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4e-14 Score=112.86 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=110.6
Q ss_pred ceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCcc
Q 042610 154 LELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMT 233 (351)
Q Consensus 154 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (351)
-+.++++++.+..++. .....+++|++++|.+.+..+..++..+++|+.|++++|.+++..|..+. .++
T Consensus 10 ~~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------~l~ 78 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE----------GAS 78 (192)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT----------TCT
T ss_pred CCEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC----------Ccc
Confidence 4788999999887754 34458999999999998333333455899999999999999876665554 456
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcc
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIP 298 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 298 (351)
+|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++....+
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 89999999999998888888899999999999999998888899999999999999999986544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.6e-14 Score=112.03 Aligned_cols=127 Identities=21% Similarity=0.230 Sum_probs=83.5
Q ss_pred cEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCC
Q 042610 177 LSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRS 256 (351)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 256 (351)
+.++++++.+. .+|..+ .++++.|++++|.+. .+|.. +..+++|+.|++++|.+.+..+..|..+
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~----------~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKE----------LSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGG----------GGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHH----------hhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 56777777776 677554 357778888777765 44432 3344567777777777766665666667
Q ss_pred CCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccc
Q 042610 257 TELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
++|++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777777777776555556666777777777777776544455666677777777776654
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=6.3e-13 Score=117.97 Aligned_cols=267 Identities=12% Similarity=0.150 Sum_probs=154.4
Q ss_pred CCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccce
Q 042610 27 NLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQL 106 (351)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L 106 (351)
.+..++.+.+.+. ++.+...+|.++ +|+.+.+..+ ++ .....++.++ +|+.+.+.. .........+..|.+|
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~--~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK--SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC--EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc--EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccC
Confidence 4577888888753 444555677775 7888888665 43 2233344443 577776653 4455666678888889
Q ss_pred eEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc-cccCCcEEEeeCCc
Q 042610 107 KVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS-AQHGLLSLDISSNS 185 (351)
Q Consensus 107 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~~L~l~~~~ 185 (351)
+.+++.++++..++.......+|+.+.+..+ +. .++...|.++++|+.+.+..+ +..+...+ ...+|+.+.+. +.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~ 258 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NG 258 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TT
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CC
Confidence 9999988888888765555678888888744 44 677777788888888888764 33332211 22567777763 33
Q ss_pred cccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEcc
Q 042610 186 FTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDIS 265 (351)
Q Consensus 186 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (351)
+. .++...+..|++|+.+++..+....... .......|..+++|+.+.+.
T Consensus 259 i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~-----------------------------~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 259 VT-NIASRAFYYCPELAEVTTYGSTFNDDPE-----------------------------AMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CC-EECTTTTTTCTTCCEEEEESSCCCCCTT-----------------------------CEECTTTTTTCTTCCEECCC
T ss_pred cc-EEChhHhhCCCCCCEEEeCCccccCCcc-----------------------------cEECHHHhhCCccCCeEEeC
Confidence 33 4555555566777777766654421000 01222334445555555555
Q ss_pred CCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-cc-CcccEEEccCc
Q 042610 266 NNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NL-SSVACLYLQNN 338 (351)
Q Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~l~l~~n 338 (351)
+ .+......+|.+|.+|+.+.+..+ +......+|..+ +|+.+++.+|.+.......+ ++ .+++.|++..+
T Consensus 309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 3 233233344555555555555433 333344455555 55555555555544444444 33 24555555544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.9e-14 Score=108.08 Aligned_cols=127 Identities=24% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCccEEEccCcccc-ccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccc
Q 042610 4 LKNLFELNFGGNKFE-GHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFE 82 (351)
Q Consensus 4 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 82 (351)
.+++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+... ..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~--~~-------- 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE--VL-------- 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH--HH--------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH--HH--------
Confidence 356677777777665 45666666677777777777766654 456666777777777766553100 01
Q ss_pred ccccccccccceeeecCcCCccceeEEEcCCCCCCcCC--chhhcCCCceEEEccCcccCCCcCh---hhhhcCccceEE
Q 042610 83 AFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAIP--NFLLLQFNLKYLDLSHNKLAGNFPT---WLLENNTKLELL 157 (351)
Q Consensus 83 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L 157 (351)
+..+++|+.|++++|.+..++ ..+..+++|+.+++++|.++ ..+. ..+..+++|+.|
T Consensus 84 -----------------~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 84 -----------------AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp -----------------HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEE
T ss_pred -----------------hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccc
Confidence 111235556666666665543 45566666666666666665 3333 334556666665
Q ss_pred Eec
Q 042610 158 YLV 160 (351)
Q Consensus 158 ~l~ 160 (351)
+++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=7.3e-15 Score=140.29 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=88.4
Q ss_pred cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccc
Q 042610 172 AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKD 251 (351)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 251 (351)
.++.|+.|++++|.+. .++..++ .+++|+.|++++|.++ .+|..+. .+++|+.|+|++|.+. .++.
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~----------~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIK----------NLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGG----------GGTTCCEEECTTSCCS-SCCS
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhh----------CCCCCCEEeCcCCcCC-ccCh
Confidence 4455666666666665 5666655 5777777777777766 5554433 3446777777777766 4566
Q ss_pred cccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccC-CceeecCCCccccccc
Q 042610 252 GLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAG-LYIPDISENNLSGSMI 322 (351)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~ 322 (351)
.++.+++|+.|++++|.++ .+|..++.+++|++|+|++|.+.+.+|..+..+.. ...+++.+|.+.+..+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 6777777888888887776 66777777888888888888877776666544321 2235566665554433
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=5.2e-15 Score=141.31 Aligned_cols=141 Identities=20% Similarity=0.273 Sum_probs=113.0
Q ss_pred chhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccc
Q 042610 192 QNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSG 271 (351)
Q Consensus 192 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (351)
...+..++.|+.|++++|.+. .+|..+. .++.|+.|+|++|.+. .++..+..+++|+.|++++|.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~----------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIF----------KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGG----------GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhc----------CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 333447899999999999987 5665443 4568999999999998 67788899999999999999999
Q ss_pred cCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-cc-CcccEEEccCccccccccc
Q 042610 272 HIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NL-SSVACLYLQNNALGDRFVK 346 (351)
Q Consensus 272 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~L~~l~l~~n~~~~~~p~ 346 (351)
.+|..++.+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+.+.++..+ .. .....+++.+|.+++.+|.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 88999999999999999999998 778889999999999999999998777655 21 1222356666666666663
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=2.6e-13 Score=108.12 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=100.9
Q ss_pred ceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCcc
Q 042610 154 LELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMT 233 (351)
Q Consensus 154 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (351)
-+.++++++.+..++. ..++.|+.|++++|.+. .+|..+ ..+++|+.|++++|.+++..+..| ..++
T Consensus 12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f----------~~l~ 78 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSF----------SNMT 78 (193)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTT----------TTCT
T ss_pred CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHc----------cCCC
Confidence 3578888888887643 34578999999999887 777554 478899999999998875444444 3556
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccc
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLE 294 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 294 (351)
+|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8899999999888877778888899999999999988555556888899999999998876
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=4e-13 Score=105.63 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=73.5
Q ss_pred ceEEEecCCccccccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCcc
Q 042610 154 LELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMT 233 (351)
Q Consensus 154 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (351)
.+.++++++.+..++ ...++.|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+.. +..++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~l~ 76 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGV----------FDKLT 76 (177)
T ss_dssp TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT----------TTTCT
T ss_pred CCEEEecCCCCccCC-CCCCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhH----------ccCCC
Confidence 345566666655543 223456666666666665 444444345666666666666655322221 23344
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccC
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGN 296 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 296 (351)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 666666666666655555555666666666666666643333445566666666666666543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2.4e-13 Score=106.80 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=80.5
Q ss_pred ccCCCCCcEEEccCCcCCCCCchhhccCC-CCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCc
Q 042610 25 LNNLTHLKVLDVSSNKLSGILPSVIANLT-SLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPT 103 (351)
Q Consensus 25 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 103 (351)
+.++++|+.|++++|+++.. +. +..+. +|++|++++|.+.+. ..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~-----------------------------~~l~~l 63 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL-----------------------------DGFPLL 63 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE-----------------------------CCCCCC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc-----------------------------cccccC
Confidence 45677777777777777743 33 44443 777777777765431 123334
Q ss_pred cceeEEEcCCCCCCcCCchh-hcCCCceEEEccCcccCCCcCh-hhhhcCccceEEEecCCccccccc-----cccccCC
Q 042610 104 FQLKVLSLPNCNLGAIPNFL-LLQFNLKYLDLSHNKLAGNFPT-WLLENNTKLELLYLVNNSFSGFQL-----TSAQHGL 176 (351)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~~L 176 (351)
++|++|++++|.+..+|..+ ..+++|+.|++++|.+. .+|. ..+..+++|+.|++++|++...+. ...++.|
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence 46666666666666665433 66667777777777665 4554 234566777777777777665543 3356677
Q ss_pred cEEEeeCCccc
Q 042610 177 LSLDISSNSFT 187 (351)
Q Consensus 177 ~~L~l~~~~~~ 187 (351)
+.|+++++...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 77777766554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.8e-13 Score=106.35 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=57.1
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcch--hhhcccCCceee
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPV--QCQNLAGLYIPD 311 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~ 311 (351)
+|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+..++.+++|++|++++|.+. .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 445555555544433 34555566666666666665333333355666666666666664 3343 455666666666
Q ss_pred cCCCcccccccc---cc-ccCcccEEEccCccc
Q 042610 312 ISENNLSGSMIS---TL-NLSSVACLYLQNNAL 340 (351)
Q Consensus 312 l~~n~~~~~~~~---~~-~~~~L~~l~l~~n~~ 340 (351)
+++|.+...+.. .+ .+++|++|++++|..
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666543332 23 566666666666654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=7.7e-12 Score=110.98 Aligned_cols=225 Identities=9% Similarity=0.088 Sum_probs=163.1
Q ss_pred eeeecCcCCccceeEEEcCCCCCCcCCc-hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc-
Q 042610 94 QVEIENCLPTFQLKVLSLPNCNLGAIPN-FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS- 171 (351)
Q Consensus 94 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~- 171 (351)
.+....+..+ +|+.+.+..+ +..++. .+.. .+|+.+.+.. .+. .++...|.+|++|+.+++..+.+..++...
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhE
Confidence 3444455554 6788887654 655544 3333 4788888875 454 666666788899999999888877765433
Q ss_pred cccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccc
Q 042610 172 AQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKD 251 (351)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 251 (351)
...+|+.+.+..+ +. .++...+..+++|+.+++..+ +....... |.+ +.|+.+.+. +.+......
T Consensus 201 ~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a----------F~~-~~L~~i~lp-~~i~~I~~~ 265 (401)
T 4fdw_A 201 VYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEA----------FRE-SGITTVKLP-NGVTNIASR 265 (401)
T ss_dssp TTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTT----------TTT-CCCSEEEEE-TTCCEECTT
T ss_pred eecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccc----------ccc-CCccEEEeC-CCccEEChh
Confidence 4578888888744 54 677777778999999988764 22112222 233 578999994 455555567
Q ss_pred cccCCCCccEEEccCCccc-----ccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-
Q 042610 252 GLLRSTELEDLDISNNILS-----GHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL- 325 (351)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~- 325 (351)
.|..+++|+.+.+.++... ......|.+|++|+.+.+.. .+......+|..|++|+.+.+..+ ++.....+|
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 8889999999999887654 34566889999999999995 477667788999999999999665 776667778
Q ss_pred ccCcccEEEccCcccc
Q 042610 326 NLSSVACLYLQNNALG 341 (351)
Q Consensus 326 ~~~~L~~l~l~~n~~~ 341 (351)
++ +|+++++.+|...
T Consensus 344 ~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SS-CCCEEEECCSSCC
T ss_pred CC-CCCEEEEcCCCCc
Confidence 88 9999999998653
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=1.3e-11 Score=109.79 Aligned_cols=270 Identities=12% Similarity=0.087 Sum_probs=161.4
Q ss_pred cCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCccceeEEEcCCCCCCcC
Q 042610 40 KLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI 119 (351)
Q Consensus 40 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 119 (351)
.++.+...+|.++.+|+.+.+..+ ++ .....++.++++|+.+.+..+ ....+...+..+..|+.+.+... +..+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~--~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR--EIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSI 131 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC--EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc--CcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeee
Confidence 455566678999999999999754 44 344567888999999988643 45566667777777777665432 2111
Q ss_pred -----------------------CchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc--ccccc
Q 042610 120 -----------------------PNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL--TSAQH 174 (351)
Q Consensus 120 -----------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~ 174 (351)
...+..+.+|+.+.+.++. . .++...+.++.+|+.+.+..+ +..+.. .....
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccccccCccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 1233444455555554322 1 344444455555555555433 221111 11233
Q ss_pred CCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccccccc
Q 042610 175 GLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL 254 (351)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 254 (351)
.|+.+.+..+.. .+....+ ...+|+.+.+...... ... ..+.++..++.+.+..+. .......+.
T Consensus 209 ~L~~i~~~~~~~--~i~~~~~-~~~~l~~i~ip~~~~~-i~~----------~~f~~~~~l~~~~~~~~~-~~i~~~~F~ 273 (394)
T 4fs7_A 209 LLENMEFPNSLY--YLGDFAL-SKTGVKNIIIPDSFTE-LGK----------SVFYGCTDLESISIQNNK-LRIGGSLFY 273 (394)
T ss_dssp TCCBCCCCTTCC--EECTTTT-TTCCCCEEEECTTCCE-ECS----------STTTTCSSCCEEEECCTT-CEECSCTTT
T ss_pred ccceeecCCCce--Eeehhhc-ccCCCceEEECCCcee-ccc----------ccccccccceeEEcCCCc-ceeeccccc
Confidence 444444333221 1111111 3445555555332110 001 234566778888887643 233445677
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-ccCcccEE
Q 042610 255 RSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-NLSSVACL 333 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~L~~l 333 (351)
.+..++.+......+. ...+..+.+|+.+.+..+ +......+|..|.+|+.+++..+ ++.....+| +|.+|+++
T Consensus 274 ~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 274 NCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 7888888887765432 345788999999999865 55456678999999999999755 666666777 89999999
Q ss_pred EccCc
Q 042610 334 YLQNN 338 (351)
Q Consensus 334 ~l~~n 338 (351)
.+..+
T Consensus 349 ~lp~~ 353 (394)
T 4fs7_A 349 NFPLS 353 (394)
T ss_dssp CCCTT
T ss_pred EECcc
Confidence 98665
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.5e-12 Score=99.39 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=46.2
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecC
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDIS 313 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (351)
.|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 45555555555555545555555555555555555553333444555555555555555554444445555555555555
Q ss_pred CCcccc
Q 042610 314 ENNLSG 319 (351)
Q Consensus 314 ~n~~~~ 319 (351)
+|.+..
T Consensus 111 ~N~~~c 116 (170)
T 3g39_A 111 NNPWDC 116 (170)
T ss_dssp SSCBCT
T ss_pred CCCCCC
Confidence 555543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=3.1e-14 Score=114.17 Aligned_cols=103 Identities=23% Similarity=0.315 Sum_probs=59.3
Q ss_pred ceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccc---cccccCCcEEEe
Q 042610 105 QLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQL---TSAQHGLLSLDI 181 (351)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l 181 (351)
+|+.|++++|.+..+|..+..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+..++. ...+++|+.|++
T Consensus 71 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 71 NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCCc--cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 444455555555555555555566666666666665 3442 4556666666666666665432 235666777777
Q ss_pred eCCccccccCc---------hhhhcCCCceEEEeecCccc
Q 042610 182 SSNSFTGELPQ---------NMDIVLPKLVYMNVSKNSFE 212 (351)
Q Consensus 182 ~~~~~~~~~~~---------~~~~~l~~L~~L~l~~~~~~ 212 (351)
++|.+.+..|. .+...+++|+.|+ ++.+.
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77766533332 2334688888886 44443
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.2e-13 Score=121.45 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=64.7
Q ss_pred ccccceeeeccccccccc----cccccCCCCccEEEccCCccccc----CCCCccCCCCCcEEEccCcccccC----cch
Q 042610 232 MTQLWALYLHNDNFSRKI----KDGLLRSTELEDLDISNNILSGH----IPSWMGNFSHLHTLSMSNNHLEGN----IPV 299 (351)
Q Consensus 232 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~ 299 (351)
.+.|++|++++|.++... ...+..+++|++|++++|.+++. ++..+...++|++|++++|.+++. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 345566666665554322 22334566777777777776542 233455667788888888888753 334
Q ss_pred hhhcccCCceeecCCCcccccccccc----ccCc--ccEEE--ccCcccccc
Q 042610 300 QCQNLAGLYIPDISENNLSGSMISTL----NLSS--VACLY--LQNNALGDR 343 (351)
Q Consensus 300 ~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~--L~~l~--l~~n~~~~~ 343 (351)
.+..+++|++|++++|.+.+.....+ .... ++.+. +.++.+++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 45566888888888888876555444 1221 66666 666666543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.3e-11 Score=96.45 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=75.3
Q ss_pred eEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCC
Q 042610 202 VYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFS 281 (351)
Q Consensus 202 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 281 (351)
+.++++++.+. .+|..+. +.|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP------------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCCCC-ccCCCcC------------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 67778877775 5554332 3677788888777777677777777788888888877754444567777
Q ss_pred CCcEEEccCcccccCcchhhhcccCCceeecCCCccccc
Q 042610 282 HLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGS 320 (351)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 320 (351)
+|++|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 788888888877755555577777888888887777654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=8.3e-14 Score=111.64 Aligned_cols=88 Identities=22% Similarity=0.168 Sum_probs=44.3
Q ss_pred hhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccccccCCcEEEeeCCccccccCc-hhhhcCCC
Q 042610 122 FLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTSAQHGLLSLDISSNSFTGELPQ-NMDIVLPK 200 (351)
Q Consensus 122 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~ 200 (351)
.+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+..++....+++|+.|++++|.+. .++. .....+++
T Consensus 65 ~~~~l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~ 141 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDK 141 (198)
T ss_dssp CHHHHTTCCEEEEEEEEEC-SCSSH-HHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTT
T ss_pred ccccCCCCCEEECCCCCcc-cccch-hhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCC-chhHHHHHhcCCC
Confidence 3444555555555555555 44432 2334555555555555555443334555555555555554 2222 12224555
Q ss_pred ceEEEeecCccc
Q 042610 201 LVYMNVSKNSFE 212 (351)
Q Consensus 201 L~~L~l~~~~~~ 212 (351)
|+.|++++|.+.
T Consensus 142 L~~L~l~~N~l~ 153 (198)
T 1ds9_A 142 LEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEECSCHHH
T ss_pred CCEEEecCCccc
Confidence 555555555554
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=4.1e-10 Score=100.03 Aligned_cols=296 Identities=11% Similarity=0.126 Sum_probs=142.9
Q ss_pred CCccccCCC-CCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccC-CCcchhhhcccccccccccccccccceeeec
Q 042610 21 LPQCLNNLT-HLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKG-RLFSFYSLANLSKFEAFQLSMETDLLQVEIE 98 (351)
Q Consensus 21 ~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~ 98 (351)
....|.+++ .|+.+.+... ++.+...+|.++.+|+.+.+..+.-.. ......++..+.+|+.+.+.. ........
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~ 131 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSE 131 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhh
Confidence 345566664 4888888753 454566678888888888886652111 022334566666666665543 23445555
Q ss_pred CcCCccceeEEEcCCCCCCcC-CchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccc-ccccccccCC
Q 042610 99 NCLPTFQLKVLSLPNCNLGAI-PNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG-FQLTSAQHGL 176 (351)
Q Consensus 99 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~L 176 (351)
.+..+.+|+.+.+... ...+ ...+..+.+|+.+.+..+ +. .+....+. ..+|+.+.+...-..- .........+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcccccccchhhhcccc
Confidence 6667777777777542 2223 234555566666666543 22 33333332 3455555553321110 0001122223
Q ss_pred cEEEeeCCccc-----------------------------------cccCchhhhcCCCceEEEeecCccccCCCCCccc
Q 042610 177 LSLDISSNSFT-----------------------------------GELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGK 221 (351)
Q Consensus 177 ~~L~l~~~~~~-----------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 221 (351)
+.......... ..+....+..+..|+.+.+...... ...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~----- 281 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGT----- 281 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECT-----
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecC-----
Confidence 33222211110 0222233334555555554332211 001
Q ss_pred cccchhhhcCccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhh
Q 042610 222 MQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQC 301 (351)
Q Consensus 222 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 301 (351)
..+.+++.|+.+.+.. .+.......|.++.+|+.+.+.++ ++.....+|.+|.+|+.+.+..+ ++.....+|
T Consensus 282 -----~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 282 -----GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp -----TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred -----cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 2244455666666642 333333445666667777776643 33233456666677777776543 444445666
Q ss_pred hcccCCceeecCCCccccccccccccCcccEEEccCcc
Q 042610 302 QNLAGLYIPDISENNLSGSMISTLNLSSVACLYLQNNA 339 (351)
Q Consensus 302 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 339 (351)
..|++|+.+++.++.... ...+.+.+|+.+.+..+.
T Consensus 354 ~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred hCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 677777777776654321 111256666666655443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=2.6e-13 Score=119.28 Aligned_cols=136 Identities=16% Similarity=0.138 Sum_probs=96.3
Q ss_pred CCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccc-----cCCCCccEEEccCCccccc-
Q 042610 199 PKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGL-----LRSTELEDLDISNNILSGH- 272 (351)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~- 272 (351)
++|+.|++++|.+.+... . .....+++|++|++++|.+.+.....+ ...+.|++|++++|.+++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~------~---~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGL------R---TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SCEEEEECTTCCCCHHHH------H---HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CCceEEEecCCCCCHHHH------H---HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 567777777776543111 1 112233467777777777665443333 2457899999999998742
Q ss_pred ---CCCCccCCCCCcEEEccCcccccC----cchhhhcccCCceeecCCCcccccccccc-----ccCcccEEEccCccc
Q 042610 273 ---IPSWMGNFSHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDISENNLSGSMISTL-----NLSSVACLYLQNNAL 340 (351)
Q Consensus 273 ---~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~l~l~~n~~ 340 (351)
++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++.....+ .+++|++|++++|++
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 333456789999999999999854 35667788999999999999987544333 579999999999998
Q ss_pred ccc
Q 042610 341 GDR 343 (351)
Q Consensus 341 ~~~ 343 (351)
++.
T Consensus 252 ~~~ 254 (372)
T 3un9_A 252 SSE 254 (372)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=3.6e-11 Score=93.61 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=78.4
Q ss_pred CCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccccccc
Q 042610 175 GLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL 254 (351)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 254 (351)
..+.++++++.+. .+|..+ .++++.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+.
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFD----------RLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTT----------TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhc----------CcccCCEEECCCCCcCccChhhcc
Confidence 4567888888777 677654 37788888888887755554443 445788888888888766666677
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCcEEEccCccccc
Q 042610 255 RSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEG 295 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 295 (351)
.+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 78888888888888875555567788888888888887763
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=3e-09 Score=94.48 Aligned_cols=284 Identities=10% Similarity=0.129 Sum_probs=192.2
Q ss_pred CCCCCchhhccCC-CCCeEEeecccccCCCcchhhhcccccccccccccc--cccceeeecCcCCccceeEEEcCCCCCC
Q 042610 41 LSGILPSVIANLT-SLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSME--TDLLQVEIENCLPTFQLKVLSLPNCNLG 117 (351)
Q Consensus 41 ~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 117 (351)
++.+...+|.+++ .|+.+.+..+ ++ .....++.++.+|+.+.+..+ .....++...+..+..|+.+.+..+ +.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt--~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT--EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC--EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee--EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence 4445556888885 5999999764 33 344567888999999988764 3455677778888888888877653 44
Q ss_pred cCC-chhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCccccccccc-cccCCcEEEeeCCccccccCchhh
Q 042610 118 AIP-NFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSGFQLTS-AQHGLLSLDISSNSFTGELPQNMD 195 (351)
Q Consensus 118 ~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~ 195 (351)
.++ ..+..+.+|+.+.+... .. .+....+..+.+|+.+.+..+ +..+.... ....|+.+.+...-. .+....+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--~i~~~af 201 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--RIGTNAF 201 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--EECTTTT
T ss_pred eehhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccccceeEEEECCccc--ccccchh
Confidence 443 45677889999999754 33 566667888999999998754 33332221 346788888865422 2223334
Q ss_pred hcCCCceEEEeecCcccc----------------------------CCCCCccccccchhhhcCccccceeeeccccccc
Q 042610 196 IVLPKLVYMNVSKNSFEG----------------------------NIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSR 247 (351)
Q Consensus 196 ~~l~~L~~L~l~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 247 (351)
..+..++........... .+|..+.... ...|.++..|+.+.+.... ..
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~--~~aF~~c~~L~~i~lp~~~-~~ 278 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIE--THAFDSCAYLASVKMPDSV-VS 278 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEEC--TTTTTTCSSCCEEECCTTC-CE
T ss_pred hhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcc--cceeeecccccEEeccccc-ce
Confidence 456666665543322110 0111111111 1456778888988886532 33
Q ss_pred cccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCcccccccccc-c
Q 042610 248 KIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTL-N 326 (351)
Q Consensus 248 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~ 326 (351)
.....|.++..|+.+.+.. .++......|.++.+|+.+.+..+ ++.....+|..|.+|+.+.+..+ ++.....+| +
T Consensus 279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 4445677889999999974 344355567899999999999865 55556678999999999999755 666666778 8
Q ss_pred cCcccEEEccCcc
Q 042610 327 LSSVACLYLQNNA 339 (351)
Q Consensus 327 ~~~L~~l~l~~n~ 339 (351)
|++|+.+++.++.
T Consensus 356 C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 356 CTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEESSCH
T ss_pred CCCCCEEEECCce
Confidence 9999999999875
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=6.4e-11 Score=92.50 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=84.2
Q ss_pred CcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeeccccccccccccccC
Q 042610 176 LLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLLR 255 (351)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 255 (351)
-+.++++++++. .+|..+ .++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+..+..+..
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFD----------HLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTT----------TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhc----------CCcCCCEEECCCCCCCccChhHhCC
Confidence 467888888887 788765 37889999999988865555443 4558899999999888766666788
Q ss_pred CCCccEEEccCCcccccCCCCccCCCCCcEEEccCccccc
Q 042610 256 STELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEG 295 (351)
Q Consensus 256 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 295 (351)
+++|+.|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8999999999999885555568889999999999998873
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=6.6e-10 Score=96.97 Aligned_cols=88 Identities=23% Similarity=0.151 Sum_probs=41.9
Q ss_pred ccCCCCccEEEccC-CcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceeecCCCccccccccccccCccc
Q 042610 253 LLRSTELEDLDISN-NILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPDISENNLSGSMISTLNLSSVA 331 (351)
Q Consensus 253 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~ 331 (351)
+..+.+|+.|++++ |.+.+..+..|+.+++|+.|+|++|.+.+..|..|..+++|+.|+|++|++...++..+....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 44444455555543 44443333444555555555555555554444444555555555555555554444444222255
Q ss_pred EEEccCccc
Q 042610 332 CLYLQNNAL 340 (351)
Q Consensus 332 ~l~l~~n~~ 340 (351)
+|++.+|++
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 555555544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=1.3e-09 Score=94.93 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred CCCCccEEEccCCcccccCCCCc---cCCCCCcEEEccCcccccC----cchhhhcccCCceeecCCCcccccccccc-c
Q 042610 255 RSTELEDLDISNNILSGHIPSWM---GNFSHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDISENNLSGSMISTL-N 326 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~ 326 (351)
.+++|+.|++.+|.+.+..+..+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+.+.....+ .
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35666777776666543221111 2456777777777777653 23334556778888887777766544433 1
Q ss_pred -cCcccEEEccCcc
Q 042610 327 -LSSVACLYLQNNA 339 (351)
Q Consensus 327 -~~~L~~l~l~~n~ 339 (351)
+ ..++++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3556776665
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=6.5e-08 Score=85.36 Aligned_cols=128 Identities=11% Similarity=0.130 Sum_probs=70.2
Q ss_pred cccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhcccccccccccccccccceeeecCcCCc
Q 042610 24 CLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAFQLSMETDLLQVEIENCLPT 103 (351)
Q Consensus 24 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 103 (351)
++....+|+.+.+.. +++.+...+|.++.+|+.+++..+ ++ .....++.++ +|+.+.+.. .........+..+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~--~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT--SIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGT 113 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC--EECTTTTTTC-CCCEEEECT--TCCEECTTTTTTC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce--EechhhhcCC-CCceEECCc--eeeEeccceeccC
Confidence 455667888888874 344455678889999999998654 33 2233445554 444444432 2333344444443
Q ss_pred cceeEEEcCCCCCCcCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCC
Q 042610 104 FQLKVLSLPNCNLGAIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNN 162 (351)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 162 (351)
+|+.+.+... +..+........++..+.+..+ +. .+....+..+.+++.+.+...
T Consensus 114 -~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 114 -DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp -CCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTT
T ss_pred -CcccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccc
Confidence 6777777653 3233322222235666555432 22 333444556777777666543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=3.9e-09 Score=92.07 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=64.6
Q ss_pred cEEEeeCC-ccccccCchhhhcCCCceEEEeec-CccccCCCCCccccccchhhhcCccccceeeecccccccccccccc
Q 042610 177 LSLDISSN-SFTGELPQNMDIVLPKLVYMNVSK-NSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL 254 (351)
Q Consensus 177 ~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 254 (351)
..++.+++ ++. .+|. +. .+++|+.|++++ |.+.+..+.. +..+++|+.|+|++|.+.+..+..|.
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~----------~~~l~~L~~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRD----------LRGLGELRNLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGG----------SCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred CEEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhH----------hccccCCCEEECCCCccceeCHHHhc
Confidence 34566666 666 6776 43 567777777774 7665433332 33445677777777777666666666
Q ss_pred CCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccc
Q 042610 255 RSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLE 294 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 294 (351)
.+++|+.|++++|.+++..+..+..++ |+.|++.+|.+.
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777777777777777644334444444 777777777665
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=8.8e-07 Score=78.04 Aligned_cols=297 Identities=13% Similarity=0.080 Sum_probs=154.6
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccccccccc
Q 042610 5 KNLFELNFGGNKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANLSKFEAF 84 (351)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~l 84 (351)
.+++.+.+... ++......|.+|.+|+.+.|..+ ++.+...+|.++ +|+.+.+..+ +. .....++... +|+.+
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~--~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK--KFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC--EECTTTTTTC-CCSEE
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee--EeccceeccC-Ccccc
Confidence 46777777543 44345667889999999999754 555666788887 6888877543 22 1122233332 56666
Q ss_pred ccccccccceeeecCcCCccceeEEEcCCCCCCcC-CchhhcCCCceEEEccCcccCCCcChh-----------hhhcCc
Q 042610 85 QLSMETDLLQVEIENCLPTFQLKVLSLPNCNLGAI-PNFLLLQFNLKYLDLSHNKLAGNFPTW-----------LLENNT 152 (351)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~-----------~~~~~~ 152 (351)
.+... ........+..+ .++.+.+... +..+ ...+..+..++.+.+............ .+....
T Consensus 119 ~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 119 EFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp ECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred cCCCc--cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 66532 222333333333 3444444332 2222 233445556666665543322000000 011222
Q ss_pred cceEEEecCCcccc-ccccccccCCcEEEeeCCccccccCchhhhcCCCceEEEeecCccccCCCCCccccccchhhhcC
Q 042610 153 KLELLYLVNNSFSG-FQLTSAQHGLLSLDISSNSFTGELPQNMDIVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMN 231 (351)
Q Consensus 153 ~L~~L~l~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (351)
.+..+.+....... .........|+.+.+..+ +. .+....+..+..|+.+.+..+ ++.... ..+.+
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~----------~aF~~ 261 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGS----------FLLQN 261 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECT----------TTTTT
T ss_pred cccccccccceeEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCc----------cccce
Confidence 23333222211100 001123445666655432 22 333444445677777766543 211111 23445
Q ss_pred ccccceeeeccccccccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccccCcchhhhcccCCceee
Q 042610 232 MTQLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLAGLYIPD 311 (351)
Q Consensus 232 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 311 (351)
+..|+.+.+... +.......|..+.+|+.+.+.++.+.......|.++.+|+.+.+..+ ++.....+|..|.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 556777777542 33333455677778888888777666455567778888888888654 5544556777888888887
Q ss_pred cCCCcccccccccc-ccC
Q 042610 312 ISENNLSGSMISTL-NLS 328 (351)
Q Consensus 312 l~~n~~~~~~~~~~-~~~ 328 (351)
+..+ ++.....+| ++.
T Consensus 340 ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 340 YPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCTT-CCEECTTTTTTSS
T ss_pred ECCc-cCEEchhHhhCCC
Confidence 7654 444444455 443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=9.4e-09 Score=89.59 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=86.5
Q ss_pred hcCCCceEEEeecCccccCCCCCccccccchhhhcCccccceeeecccccccccccccc--CCCCccEEEccC--Ccccc
Q 042610 196 IVLPKLVYMNVSKNSFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDGLL--RSTELEDLDISN--NILSG 271 (351)
Q Consensus 196 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~--~~~~~ 271 (351)
..+|+|+.|.++++.-. .++. + .+++|++|++..+.+.......+. .+++|+.|+++. +...+
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-----------~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-----------K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-----------C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC
T ss_pred hcCCCCcEEEEeCCCCc-eecc-----------c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc
Confidence 35677777777665211 1111 1 145677777777666554433333 567788887742 11111
Q ss_pred -----cCCCCc--cCCCCCcEEEccCcccccCcchhhh---cccCCceeecCCCcccccccccc-----ccCcccEEEcc
Q 042610 272 -----HIPSWM--GNFSHLHTLSMSNNHLEGNIPVQCQ---NLAGLYIPDISENNLSGSMISTL-----NLSSVACLYLQ 336 (351)
Q Consensus 272 -----~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~l~l~ 336 (351)
.+...+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+..+..+ .+++|++|+++
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 111112 3589999999999998865544443 57899999999999987543322 57999999999
Q ss_pred Ccccccc
Q 042610 337 NNALGDR 343 (351)
Q Consensus 337 ~n~~~~~ 343 (351)
+|.+++.
T Consensus 316 ~n~i~d~ 322 (362)
T 2ra8_A 316 YNYLSDE 322 (362)
T ss_dssp SBBCCHH
T ss_pred CCcCCHH
Confidence 9998765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=4.6e-09 Score=82.75 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=45.5
Q ss_pred CCCCccEEEccCCccccc----CCCCccCCCCCcEEEccCcccccC----cchhhhcccCCceeec--CCCccccccccc
Q 042610 255 RSTELEDLDISNNILSGH----IPSWMGNFSHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDI--SENNLSGSMIST 324 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~n~~~~~~~~~ 324 (351)
..+.|++|++++|.+.+. +...+...++|++|++++|.+.+. +...+...++|++|++ ++|.+.......
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 344555555555555431 122233445566666666666543 2344455566666666 556665433222
Q ss_pred c-----ccCcccEEEccCcccc
Q 042610 325 L-----NLSSVACLYLQNNALG 341 (351)
Q Consensus 325 ~-----~~~~L~~l~l~~n~~~ 341 (351)
+ ..++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2 4466666666666654
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.54 E-value=3.3e-08 Score=75.99 Aligned_cols=82 Identities=6% Similarity=0.017 Sum_probs=35.6
Q ss_pred ccceeeeccccccccccccccCCCCccEEEccCCc-ccccCCCCccCC----CCCcEEEccCcc-cccCcchhhhcccCC
Q 042610 234 QLWALYLHNDNFSRKIKDGLLRSTELEDLDISNNI-LSGHIPSWMGNF----SHLHTLSMSNNH-LEGNIPVQCQNLAGL 307 (351)
Q Consensus 234 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~L 307 (351)
.|++|++++|.++......+..+++|+.|++++|. +++.....+..+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554444443444444455555555542 333222222221 234455554442 443333334444445
Q ss_pred ceeecCCC
Q 042610 308 YIPDISEN 315 (351)
Q Consensus 308 ~~L~l~~n 315 (351)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55554444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=2.3e-08 Score=78.75 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=76.6
Q ss_pred cCCCceEEEeecC-ccccCCCCCccccccchhhhcCccccceeeeccccccccc----cccccCCCCccEEEccCCcccc
Q 042610 197 VLPKLVYMNVSKN-SFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKI----KDGLLRSTELEDLDISNNILSG 271 (351)
Q Consensus 197 ~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 271 (351)
..+.|+.|++++| .+.+ .+...+...+...+.|++|++++|.+.... ...+...+.|++|++++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPV------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp TCTTCCEEECTTCTTCCH------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred cCCCCCEEEecCCCCCCH------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4566666666666 5542 222333344555566777777777665533 2233445678888888887764
Q ss_pred c----CCCCccCCCCCcEEEc--cCcccccC----cchhhhcccCCceeecCCCccccc
Q 042610 272 H----IPSWMGNFSHLHTLSM--SNNHLEGN----IPVQCQNLAGLYIPDISENNLSGS 320 (351)
Q Consensus 272 ~----~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~ 320 (351)
. +...+...++|++|++ ++|.+.+. +...+...+.|++|++++|.+...
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 2 3445667788999999 78888754 345566678999999999987643
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=7.2e-08 Score=74.11 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=62.5
Q ss_pred CCCcEEEccCCcCCCCCchhhccCCCCCeEEeecccccCCCcchhhhccc----ccccccccccccccceeeecCcCCcc
Q 042610 29 THLKVLDVSSNKLSGILPSVIANLTSLEYLALYDNRFKGRLFSFYSLANL----SKFEAFQLSMETDLLQVEIENCLPTF 104 (351)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l----~~L~~l~l~~~~~~~~~~~~~~~~~~ 104 (351)
.+|+.|++++|.+++.....+..+++|++|++++|.-.. ...+..+..+ ++|+.+++.+|+..++.+...+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 468888888888776655667778888888888885221 2333444442 46888888888777777777777888
Q ss_pred ceeEEEcCCCCC
Q 042610 105 QLKVLSLPNCNL 116 (351)
Q Consensus 105 ~L~~L~l~~~~~ 116 (351)
+|+.|++++|.-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 899999988863
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=8.2e-07 Score=73.49 Aligned_cols=117 Identities=15% Similarity=0.178 Sum_probs=68.1
Q ss_pred cccccceeeecCcCCccceeE--EEcCCCCCCcCCc----hhhcCCCceEEEccCcccCCCcCh--hhhhcCccceEEEe
Q 042610 88 METDLLQVEIENCLPTFQLKV--LSLPNCNLGAIPN----FLLLQFNLKYLDLSHNKLAGNFPT--WLLENNTKLELLYL 159 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~L~~--L~l~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l 159 (351)
++..........+...+.|.. ++++.+....++. ....+++|+.|++++|.+.+ ++. ..+..+++|+.|++
T Consensus 125 yn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~L 203 (267)
T 3rw6_A 125 YDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNL 203 (267)
T ss_dssp EETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEEC
T ss_pred cchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEEC
Confidence 333333344444444444444 4555554333322 12446788888888888873 321 23457888888888
Q ss_pred cCCcccccccccccc--CCcEEEeeCCccccccCc------hhhhcCCCceEEE
Q 042610 160 VNNSFSGFQLTSAQH--GLLSLDISSNSFTGELPQ------NMDIVLPKLVYMN 205 (351)
Q Consensus 160 ~~~~l~~~~~~~~~~--~L~~L~l~~~~~~~~~~~------~~~~~l~~L~~L~ 205 (351)
++|.+.+......+. .|++|++++|.+.+.+|. .+...+|+|+.||
T Consensus 204 s~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 204 SGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 888887764444444 777777777777654442 2334567777664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=8.1e-06 Score=67.51 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=47.8
Q ss_pred CCCCccEEEccCCcccc--cCCCCccCCCCCcEEEccCcccccCcchhhhccc--CCceeecCCCccccccc-------c
Q 042610 255 RSTELEDLDISNNILSG--HIPSWMGNFSHLHTLSMSNNHLEGNIPVQCQNLA--GLYIPDISENNLSGSMI-------S 323 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~-------~ 323 (351)
.+++|+.|++++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++.+|.+.+..+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45677777777777764 3344555677777777777777643 2233333 77777777777765332 1
Q ss_pred cc-ccCcccEEE
Q 042610 324 TL-NLSSVACLY 334 (351)
Q Consensus 324 ~~-~~~~L~~l~ 334 (351)
.+ .+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 12 567777665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=3.2e-05 Score=60.54 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCCCccEEEccCCcccccCC----CCccCCCCCcEEEccCcccccC----cchhhhcccCCceeecCCC---ccccc---
Q 042610 255 RSTELEDLDISNNILSGHIP----SWMGNFSHLHTLSMSNNHLEGN----IPVQCQNLAGLYIPDISEN---NLSGS--- 320 (351)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n---~~~~~--- 320 (351)
....|+.|++++|.+.+... ..+.....|++|+|+.|.|.+. +..++..-+.|++|+|++| .+...
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 34455555555555543221 1223345556666666655533 2233344455666666543 22221
Q ss_pred -ccccc-ccCcccEEEccCccc
Q 042610 321 -MISTL-NLSSVACLYLQNNAL 340 (351)
Q Consensus 321 -~~~~~-~~~~L~~l~l~~n~~ 340 (351)
++..+ ..++|++|+++.|..
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhCCCcCeEeccCCCc
Confidence 12222 445566666655543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.45 E-value=4.8e-05 Score=59.52 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=66.8
Q ss_pred CCCceEEEeecC-ccccCCCCCccccccchhhhcCccccceeeecccccccccccc----ccCCCCccEEEccCCccccc
Q 042610 198 LPKLVYMNVSKN-SFEGNIPSSIGKMQGLLATYMNMTQLWALYLHNDNFSRKIKDG----LLRSTELEDLDISNNILSGH 272 (351)
Q Consensus 198 l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~ 272 (351)
-+.|+.|+++++ .+.+ .+...+...+...+.|+.|+|++|.+.+..... +...+.|+.|+++.|.+.+.
T Consensus 40 n~~L~~L~L~~nn~igd------~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSK------ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp CSSCCEEECTTCCSSCH------HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred CCCccEEECCCCCCCCH------HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 345666666553 4432 223333344555566666666666665543332 23346777788877776642
Q ss_pred ----CCCCccCCCCCcEEEccCc---cccc----CcchhhhcccCCceeecCCCccc
Q 042610 273 ----IPSWMGNFSHLHTLSMSNN---HLEG----NIPVQCQNLAGLYIPDISENNLS 318 (351)
Q Consensus 273 ----~~~~~~~l~~L~~L~l~~~---~~~~----~~~~~~~~~~~L~~L~l~~n~~~ 318 (351)
+...+..-..|++|+++++ .+.+ .+...+..-+.|++|+++.|.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2234455567888888765 3332 24455677788888888877543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0052 Score=44.64 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=44.3
Q ss_pred EEEcCCCCCC--cCCchhhcCCCceEEEccCcccCCCcChhhhhcCccceEEEecCCcccc
Q 042610 108 VLSLPNCNLG--AIPNFLLLQFNLKYLDLSHNKLAGNFPTWLLENNTKLELLYLVNNSFSG 166 (351)
Q Consensus 108 ~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 166 (351)
.++-++.++. .+|..+. ++++.|++++|.++ .++...+..+++|+.|++.+|++.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeec
Confidence 5677777776 7776433 27999999999998 8888888888999999998887754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.18 E-value=0.013 Score=42.50 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=33.6
Q ss_pred eeeecccccc-ccccccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccCcccc
Q 042610 237 ALYLHNDNFS-RKIKDGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSNNHLE 294 (351)
Q Consensus 237 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 294 (351)
.++-++..++ ..+|..+ ..+++.|++++|.++...+..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444444443 1333222 245777777777777444556677777777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.51 E-value=5.2 Score=27.02 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=34.2
Q ss_pred ccccccCCccccCCCCCcEEEccCCcCCCCCchhhccCCCCCeEEeecc
Q 042610 15 NKFEGHLPQCLNNLTHLKVLDVSSNKLSGILPSVIANLTSLEYLALYDN 63 (351)
Q Consensus 15 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 63 (351)
..++..-...|.+|..|+.+.|... ++.+...+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3444344566788888998888754 34455668888899999888765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.76 E-value=7.1 Score=26.34 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=18.2
Q ss_pred ccccCCCCccEEEccCCcccccCCCCccCCCCCcEEEccC
Q 042610 251 DGLLRSTELEDLDISNNILSGHIPSWMGNFSHLHTLSMSN 290 (351)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (351)
..|.+|.+|+.+.|.++ ++......|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34445555555555443 2213333455555555555543
Done!