BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042614
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/156 (60%), Positives = 119/156 (76%), Gaps = 8/156 (5%)
Query: 1 FHPSDEELIVHYLTNKVASIPLPASIIAEIDLYKYNPWDLPRKALFGEEEWYFFTPRDRK 60
F+P+DEEL+V YL K A +IAEIDLYK++PW LP KALFGE+EWYFF+PRDRK
Sbjct: 23 FYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRK 82
Query: 61 YPNGARPNRAAASGFWKATGTDKPILTSFGTKSIGVKKALVFYEGRPPKGYKTDWIMHEY 120
YPNG+RPNR A SG+WKATGTDK I T + +G+KKALVFY G+ PKG KT+WIMHEY
Sbjct: 83 YPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEY 140
Query: 121 RLPDTIAWTPNRK-GSMRLDDWVLCRVRQNSINSRK 155
RL + P+R+ GS +LDDWVLCR+ + +++K
Sbjct: 141 RLIE-----PSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/147 (64%), Positives = 115/147 (78%), Gaps = 3/147 (2%)
Query: 1 FHPSDEELIVHYLTNKVASIPLPASIIAEIDLYKYNPWDLPRKALFGEEEWYFFTPRDRK 60
FHP+D+EL+ HYL K A LP IIAE+DLYK++PWDLP +ALFG EWYFFTPRDRK
Sbjct: 21 FHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRK 80
Query: 61 YPNGARPNRAAASGFWKATGTDKPILTSFGTKSIGVKKALVFYEGRPPKGYKTDWIMHEY 120
YPNG+RPNRAA +G+WKATG DKP+ +++G+KKALVFY G+ P+G KTDWIMHEY
Sbjct: 81 YPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEY 138
Query: 121 RL-PDTIAWTPNRKGSMRLDDWVLCRV 146
RL A +KGS+RLDDWVLCR+
Sbjct: 139 RLADAGRAAAGAKKGSLRLDDWVLCRL 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/156 (60%), Positives = 119/156 (76%), Gaps = 8/156 (5%)
Query: 1 FHPSDEELIVHYLTNKVASIPLPASIIAEIDLYKYNPWDLPRKALFGEEEWYFFTPRDRK 60
F+P+DEEL+V YL K A +IAEIDLYK++PW LP KALFGE+EWYFF+PRDRK
Sbjct: 26 FYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRK 85
Query: 61 YPNGARPNRAAASGFWKATGTDKPILTSFGTKSIGVKKALVFYEGRPPKGYKTDWIMHEY 120
YPNG+RPNR A SG+WKATGTDK I T + +G+KKALVFY G+ PKG KT+WIMHEY
Sbjct: 86 YPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEY 143
Query: 121 RLPDTIAWTPNRK-GSMRLDDWVLCRVRQNSINSRK 155
RL + P+R+ GS +LDDWVLCR+ + +++K
Sbjct: 144 RLIE-----PSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|2P3Y|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
pdb|2P3Y|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
Northeast Structural Genomics Target Vpr109
Length = 491
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 67 PNRAAASGFWKATGTDK----PILTSFGTKSIGVKKAL---------VFYEGRPPKGYKT 113
P AS FW T D+ I+ G+ I +K L V+Y +P KGY+
Sbjct: 386 PANVPASNFWSTTVYDENNRLXIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYEN 445
Query: 114 DWIM 117
+W+
Sbjct: 446 NWVQ 449
>pdb|3VB9|A Chain A, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|B Chain B, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|C Chain C, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
pdb|3VB9|D Chain D, Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus
In Monoclinic Form, Northeast Structural Genomics Target
Vpr109
Length = 483
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
Query: 67 PNRAAASGFWKATGTDK----PILTSFGTKSIGVKKAL---------VFYEGRPPKGYKT 113
P AS FW T D+ I+ G+ I +K L V+Y +P KGY+
Sbjct: 386 PANVPASNFWSTTVYDENNRLXIINDAGSPDISSRKNLKVNSDGSIDVYYGPKPVKGYEN 445
Query: 114 DWIM 117
+W+
Sbjct: 446 NWVQ 449
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 36/174 (20%)
Query: 152 NSRKAWDDRNGYSYEAAPGFISKVNELRHMNNTNPNVEMVKSYLYNDCSMLPYIFASRDF 211
N RKAWD Y + P F+ NP Y Y S Y+ A D+
Sbjct: 800 NDRKAWDINTQYMF--GPAFL-----------VNP------VYEYKARSRDVYLPAGSDW 840
Query: 212 TSCCIDTDSNISFQGGDKSCLAAHDEDSLFNPLKRIKLMEKNQQDDCVPPSKKIKEGYVH 271
+F G+K LA + PL R+ L K VP I+
Sbjct: 841 ----------YNFYTGEK--LAGGQTITADAPLARVPLFVK--AGAIVPTGPLIQHVDEG 886
Query: 272 KEEEIILSVSNESTGETNIYETDHSEGNNFSHDHHQWSHTMQYHQELNNLVFTG 325
++++V + G +IYE D G + + +WS + ++ + G
Sbjct: 887 LNSPLLITVYTGANGSFDIYEDD---GRSLKYQQGEWSRIPLSYDDVTGTLIIG 937
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,243,490
Number of Sequences: 62578
Number of extensions: 501157
Number of successful extensions: 1048
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1024
Number of HSP's gapped (non-prelim): 23
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)