Query 042614
Match_columns 326
No_of_seqs 166 out of 960
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.7E-53 1.3E-57 376.7 13.4 149 1-151 21-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-52 6E-57 371.4 11.6 146 1-152 23-168 (171)
3 2c4b_A Barnase mcoeeti fusion; 33.4 28 0.00095 29.7 3.1 62 4-79 4-73 (143)
4 1cmb_A Met APO-repressor; DNA- 17.8 1.3E+02 0.0045 23.8 4.0 39 2-44 50-88 (104)
5 3nr5_A MAF1, repressor of RNA 11.9 52 0.0018 28.5 0.2 12 27-38 119-130 (164)
6 2zvk_U DNA polymerase ETA, pro 10.5 61 0.0021 19.8 0.1 11 236-246 11-21 (26)
7 3q3f_A Ribonuclease/ubiquitin 7.5 3.2E+02 0.011 23.6 3.6 52 4-63 7-66 (189)
8 2jv2_A Putative uncharacterize 7.2 2E+02 0.007 21.8 1.9 28 6-34 27-54 (83)
9 2oh5_A Polyhedrin, C-polyhedri 6.0 3.4E+02 0.012 23.8 2.9 28 73-102 140-168 (248)
10 3alz_B CDW150; viral protein-r 4.7 2.1E+02 0.0071 24.2 0.6 27 31-57 94-123 (149)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.7e-53 Score=376.65 Aligned_cols=149 Identities=64% Similarity=1.240 Sum_probs=128.2
Q ss_pred CCCChHHHHHHHHHHhHcCCCCCCcceeeccCCCCCCCCCCccccCCCceEEEEeccCCcCCCCCCCcccCCCCeEEeec
Q 042614 1 FHPSDEELIVHYLTNKVASIPLPASIIAEIDLYKYNPWDLPRKALFGEEEWYFFTPRDRKYPNGARPNRAAASGFWKATG 80 (326)
Q Consensus 1 F~PTDEELV~~YL~~Ki~G~plp~~~I~evDVY~~ePwdLP~~~~~g~~eWYFFspr~rKy~~G~R~nRatg~GyWKatG 80 (326)
|||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++.+|||||++++||++|.|++|+|++||||++|
T Consensus 21 F~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG 100 (174)
T 3ulx_A 21 FHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATG 100 (174)
T ss_dssp CCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEECS
T ss_pred eCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEccCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCcceEeCCCCeEEEEEEEeeeecCCCCCCCccCeEEEEEEcCCCCCCC-CCCCCCCCCCcEEEEEEEecCC
Q 042614 81 TDKPILTSFGTKSIGVKKALVFYEGRPPKGYKTDWIMHEYRLPDTIAWT-PNRKGSMRLDDWVLCRVRQNSI 151 (326)
Q Consensus 81 ~~k~I~~~~gg~vIG~KktLvFY~gr~pkg~kT~WvMhEYrL~~~~~~~-~~~~g~~~~dd~VLCRI~~K~~ 151 (326)
++++|.+. |.+||+||+|+||.|++|+|.+|+|+||||+|.+..... ....+++.+++|||||||+|+.
T Consensus 101 ~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 101 ADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp CCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred CCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence 99999874 799999999999999999999999999999999875432 1122345678999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-52 Score=371.36 Aligned_cols=146 Identities=63% Similarity=1.172 Sum_probs=124.4
Q ss_pred CCCChHHHHHHHHHHhHcCCCCCCcceeeccCCCCCCCCCCccccCCCceEEEEeccCCcCCCCCCCcccCCCCeEEeec
Q 042614 1 FHPSDEELIVHYLTNKVASIPLPASIIAEIDLYKYNPWDLPRKALFGEEEWYFFTPRDRKYPNGARPNRAAASGFWKATG 80 (326)
Q Consensus 1 F~PTDEELV~~YL~~Ki~G~plp~~~I~evDVY~~ePwdLP~~~~~g~~eWYFFspr~rKy~~G~R~nRatg~GyWKatG 80 (326)
|||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++.+|||||++++||++|.|++|+|++||||++|
T Consensus 23 F~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG 102 (171)
T 1ut7_A 23 FYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG 102 (171)
T ss_dssp ECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEE
T ss_pred eCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEeccC
Confidence 89999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCcceEeCCCCeEEEEEEEeeeecCCCCCCCccCeEEEEEEcCCCCCCCCCCCCCCCCCcEEEEEEEecCCC
Q 042614 81 TDKPILTSFGTKSIGVKKALVFYEGRPPKGYKTDWIMHEYRLPDTIAWTPNRKGSMRLDDWVLCRVRQNSIN 152 (326)
Q Consensus 81 ~~k~I~~~~gg~vIG~KktLvFY~gr~pkg~kT~WvMhEYrL~~~~~~~~~~~g~~~~dd~VLCRI~~K~~~ 152 (326)
++++|... +.+||+||+|+||.|++|++.+|+|+||||+|...... .+.+..++|||||||+|...
T Consensus 103 ~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~----~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 103 TDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR----NGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCEEEEEEEECC--
T ss_pred CCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc----cCcccCCCEEEEEEEEcCCC
Confidence 99999974 69999999999999999999999999999999987421 12345689999999999764
No 3
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=33.37 E-value=28 Score=29.69 Aligned_cols=62 Identities=23% Similarity=0.420 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHhHcCCCCCCccee--eccCCCCCCCC------CCccccCCCceEEEEeccCCcCCCCCCCcccCCCCe
Q 042614 4 SDEELIVHYLTNKVASIPLPASIIA--EIDLYKYNPWD------LPRKALFGEEEWYFFTPRDRKYPNGARPNRAAASGF 75 (326)
Q Consensus 4 TDEELV~~YL~~Ki~G~plp~~~I~--evDVY~~ePwd------LP~~~~~g~~eWYFFspr~rKy~~G~R~nRatg~Gy 75 (326)
|+.+-|..||.. -..||..+|. +++--+++|.+ +|+++..|+- |..+++.-|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 455666678886 3467888776 46777888865 5776543322 6656554443 34678
Q ss_pred EEee
Q 042614 76 WKAT 79 (326)
Q Consensus 76 WKat 79 (326)
|+--
T Consensus 70 y~E~ 73 (143)
T 2c4b_A 70 WREA 73 (143)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8553
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=17.78 E-value=1.3e+02 Score=23.76 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=32.0
Q ss_pred CCChHHHHHHHHHHhHcCCCCCCcceeeccCCCCCCCCCCccc
Q 042614 2 HPSDEELIVHYLTNKVASIPLPASIIAEIDLYKYNPWDLPRKA 44 (326)
Q Consensus 2 ~PTDEELV~~YL~~Ki~G~plp~~~I~evDVY~~ePwdLP~~~ 44 (326)
|-|-.||+..-...-..|+|||. +.|+-+..|.++|..+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 55778888877777889999997 4699999999999754
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=11.86 E-value=52 Score=28.49 Aligned_cols=12 Identities=58% Similarity=1.030 Sum_probs=10.5
Q ss_pred eeeccCCCCCCC
Q 042614 27 IAEIDLYKYNPW 38 (326)
Q Consensus 27 I~evDVY~~ePw 38 (326)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 567899999998
No 6
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=10.54 E-value=61 Score=19.84 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=9.8
Q ss_pred CchhccCcccc
Q 042614 236 DEDSLFNPLKR 246 (326)
Q Consensus 236 ~~~~~~~~~~~ 246 (326)
.+++||.||.+
T Consensus 11 TLesFFK~L~~ 21 (26)
T 2zvk_U 11 TLESFFKPLTH 21 (26)
T ss_pred cHHHHhccCCc
Confidence 68999999988
No 7
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=7.49 E-value=3.2e+02 Score=23.64 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHhHcCCCCCCccee--eccCCCCCCCC------CCccccCCCceEEEEeccCCcCCC
Q 042614 4 SDEELIVHYLTNKVASIPLPASIIA--EIDLYKYNPWD------LPRKALFGEEEWYFFTPRDRKYPN 63 (326)
Q Consensus 4 TDEELV~~YL~~Ki~G~plp~~~I~--evDVY~~ePwd------LP~~~~~g~~eWYFFspr~rKy~~ 63 (326)
|.++++ .||..- ..||..+|. ++.--++.|-. +|+++..|+. |..++++.|.
T Consensus 7 ~~~~v~-~y~~~~---~~lp~~yitk~~a~~~gw~~~~~~l~~~~~~~~igg~~----f~n~e~~lp~ 66 (189)
T 3q3f_A 7 TFDGVA-DYLQTY---HKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG 66 (189)
T ss_dssp SHHHHH-HHHHHH---SSCCTTEECHHHHHHHTCCTTSCCHHHHSTTCEEEEEE----ECCTTCCSCC
T ss_pred CchHHH-HHHHHh---CcCCcceeeHHHHHHcCCCCCCCCHhhcCCCccccCce----eccCCCcCCC
Confidence 345555 699872 468888885 45555677765 5766543333 7767666664
No 8
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=7.20 E-value=2e+02 Score=21.79 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHcCCCCCCcceeeccCCC
Q 042614 6 EELIVHYLTNKVASIPLPASIIAEIDLYK 34 (326)
Q Consensus 6 EELV~~YL~~Ki~G~plp~~~I~evDVY~ 34 (326)
.++ ..||++++.|+|+...-+-.+++++
T Consensus 27 ~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 27 PDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp HHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred ccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 455 4699999999998764333366644
No 9
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=5.98 E-value=3.4e+02 Score=23.77 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=20.7
Q ss_pred CCeEEeecC-CcceEeCCCCeEEEEEEEeee
Q 042614 73 SGFWKATGT-DKPILTSFGTKSIGVKKALVF 102 (326)
Q Consensus 73 ~GyWKatG~-~k~I~~~~gg~vIG~KktLvF 102 (326)
+--|.++|- -+.|.. +|++||+...|..
T Consensus 140 shpweatgikyrki~~--dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKR--DGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEE--TTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeee--cceEeeeeeeeec
Confidence 446999984 455665 5899999887754
No 10
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=4.70 E-value=2.1e+02 Score=24.18 Aligned_cols=27 Identities=33% Similarity=0.676 Sum_probs=16.6
Q ss_pred cCCCCCCCCCC---ccccCCCceEEEEecc
Q 042614 31 DLYKYNPWDLP---RKALFGEEEWYFFTPR 57 (326)
Q Consensus 31 DVY~~ePwdLP---~~~~~g~~eWYFFspr 57 (326)
|=|.++|..|- -.++.+++.|||-+-.
T Consensus 94 dgY~F~leNlSL~IlesrkedEGwYfmtlE 123 (149)
T 3alz_B 94 DRYRFYLENLSLAIRESTKKDEGWYFMTLE 123 (149)
T ss_dssp SSEEEETTTTEEEETTCCGGGCEEEEEEEE
T ss_pred cccEEeeccceeehhhcccccCceEEEEEe
Confidence 55666666663 1233457789988744
Done!