Query 042615
Match_columns 160
No_of_seqs 134 out of 1156
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 4.9E-30 1.1E-34 161.7 16.5 147 2-151 12-158 (160)
2 KOG0027 Calmodulin and related 100.0 1.4E-27 3E-32 153.0 17.2 146 4-149 2-149 (151)
3 PTZ00183 centrin; Provisional 99.9 3.5E-25 7.6E-30 143.0 17.0 148 2-151 9-156 (158)
4 PTZ00184 calmodulin; Provision 99.9 3.1E-24 6.6E-29 137.3 16.3 146 2-149 3-148 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 7.7E-24 1.7E-28 131.1 14.9 147 2-150 25-171 (172)
6 KOG0030 Myosin essential light 99.9 1.1E-23 2.3E-28 127.5 12.3 147 1-148 2-150 (152)
7 KOG0031 Myosin regulatory ligh 99.9 4.6E-23 9.9E-28 126.8 14.9 143 2-150 24-166 (171)
8 KOG0034 Ca2+/calmodulin-depend 99.9 6.1E-21 1.3E-25 124.4 14.5 148 4-157 27-183 (187)
9 KOG0037 Ca2+-binding protein, 99.8 4.5E-18 9.7E-23 111.0 14.8 133 9-150 56-189 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 5E-18 1.1E-22 110.9 13.1 146 2-152 21-178 (193)
11 KOG0036 Predicted mitochondria 99.8 1.2E-17 2.6E-22 117.9 15.9 141 3-151 7-148 (463)
12 PLN02964 phosphatidylserine de 99.6 5.9E-14 1.3E-18 106.7 13.2 105 2-113 135-243 (644)
13 KOG4223 Reticulocalbin, calume 99.6 2.8E-14 6.2E-19 98.3 10.1 139 8-146 161-302 (325)
14 KOG4223 Reticulocalbin, calume 99.6 7.5E-14 1.6E-18 96.3 10.5 145 7-151 74-230 (325)
15 KOG0037 Ca2+-binding protein, 99.5 3.9E-13 8.4E-18 88.1 10.4 93 9-110 123-217 (221)
16 PF13499 EF-hand_7: EF-hand do 99.5 3.5E-13 7.5E-18 74.4 7.5 62 86-147 1-66 (66)
17 cd05022 S-100A13 S-100A13: S-1 99.5 4.8E-13 1E-17 77.5 7.4 67 85-151 8-77 (89)
18 KOG0038 Ca2+-binding kinase in 99.4 3.2E-12 6.9E-17 78.7 10.5 145 4-154 22-182 (189)
19 PF13499 EF-hand_7: EF-hand do 99.4 9.1E-13 2E-17 72.7 7.5 62 11-72 1-66 (66)
20 KOG0044 Ca2+ sensor (EF-Hand s 99.4 1.7E-12 3.6E-17 85.2 9.6 103 11-113 65-175 (193)
21 cd05022 S-100A13 S-100A13: S-1 99.4 1.3E-12 2.8E-17 75.7 7.5 69 6-74 4-75 (89)
22 KOG0027 Calmodulin and related 99.4 4.8E-12 1E-16 81.1 10.1 104 45-151 7-115 (151)
23 cd05027 S-100B S-100B: S-100B 99.4 3.7E-12 8E-17 73.9 8.3 66 85-150 8-80 (88)
24 KOG0377 Protein serine/threoni 99.4 2.2E-11 4.8E-16 87.6 13.7 138 10-149 464-615 (631)
25 cd05027 S-100B S-100B: S-100B 99.4 4.6E-12 1E-16 73.5 8.4 68 6-73 4-78 (88)
26 PTZ00183 centrin; Provisional 99.4 2.3E-11 4.9E-16 78.4 11.4 102 46-150 17-119 (158)
27 smart00027 EH Eps15 homology d 99.4 6.8E-12 1.5E-16 74.3 7.7 75 84-160 9-83 (96)
28 COG5126 FRQ1 Ca2+-binding prot 99.3 2.9E-11 6.2E-16 76.9 10.8 98 12-113 58-156 (160)
29 smart00027 EH Eps15 homology d 99.3 1.4E-11 3.1E-16 72.9 8.7 69 3-73 3-71 (96)
30 PTZ00184 calmodulin; Provision 99.3 6.6E-11 1.4E-15 75.4 10.7 101 47-150 12-113 (149)
31 KOG0040 Ca2+-binding actin-bun 99.3 9.4E-11 2E-15 94.4 13.3 138 2-148 2245-2397(2399)
32 cd05031 S-100A10_like S-100A10 99.3 2.3E-11 5.1E-16 71.7 7.5 67 85-151 8-81 (94)
33 cd05029 S-100A6 S-100A6: S-100 99.3 3.9E-11 8.4E-16 69.6 8.1 68 6-73 6-78 (88)
34 cd05029 S-100A6 S-100A6: S-100 99.3 4.1E-11 9E-16 69.5 8.1 66 85-150 10-80 (88)
35 cd05025 S-100A1 S-100A1: S-100 99.3 6E-11 1.3E-15 69.7 8.3 66 85-150 9-81 (92)
36 PF13833 EF-hand_8: EF-hand do 99.3 3.5E-11 7.5E-16 63.6 6.6 52 98-149 1-53 (54)
37 KOG2562 Protein phosphatase 2 99.2 8.6E-11 1.9E-15 84.9 9.8 133 7-145 275-420 (493)
38 cd05026 S-100Z S-100Z: S-100Z 99.2 8.2E-11 1.8E-15 69.1 8.1 66 85-150 10-82 (93)
39 cd05025 S-100A1 S-100A1: S-100 99.2 1E-10 2.2E-15 68.7 8.4 68 6-73 5-79 (92)
40 cd00052 EH Eps15 homology doma 99.2 5.9E-11 1.3E-15 65.5 7.0 61 88-150 2-62 (67)
41 cd05031 S-100A10_like S-100A10 99.2 1.1E-10 2.3E-15 68.9 8.1 67 7-73 5-78 (94)
42 cd00213 S-100 S-100: S-100 dom 99.2 8.9E-11 1.9E-15 68.4 7.7 68 6-73 4-78 (88)
43 KOG0034 Ca2+/calmodulin-depend 99.2 2.8E-10 6E-15 74.7 10.7 102 13-114 69-176 (187)
44 cd05026 S-100Z S-100Z: S-100Z 99.2 1.5E-10 3.1E-15 68.1 8.2 68 6-73 6-80 (93)
45 PLN02964 phosphatidylserine de 99.2 4.5E-10 9.7E-15 85.9 12.6 122 26-150 120-244 (644)
46 cd00213 S-100 S-100: S-100 dom 99.2 1.4E-10 3E-15 67.6 7.6 68 84-151 7-81 (88)
47 PF13833 EF-hand_8: EF-hand do 99.2 1.4E-10 3E-15 61.3 6.5 51 23-73 1-52 (54)
48 cd00051 EFh EF-hand, calcium b 99.2 2.9E-10 6.2E-15 61.4 7.8 61 87-147 2-62 (63)
49 PF14658 EF-hand_9: EF-hand do 99.2 2.1E-10 4.6E-15 61.8 6.6 61 89-149 2-64 (66)
50 cd00052 EH Eps15 homology doma 99.2 2.2E-10 4.7E-15 63.2 6.7 58 13-72 2-59 (67)
51 KOG0028 Ca2+-binding protein ( 99.2 9.9E-10 2.1E-14 68.9 10.1 104 46-152 33-137 (172)
52 cd00051 EFh EF-hand, calcium b 99.1 4.9E-10 1.1E-14 60.4 7.5 61 12-72 2-62 (63)
53 cd00252 SPARC_EC SPARC_EC; ext 99.1 6.9E-10 1.5E-14 67.5 7.8 62 84-149 47-108 (116)
54 cd05023 S-100A11 S-100A11: S-1 99.1 9.9E-10 2.2E-14 63.8 8.1 66 85-150 9-81 (89)
55 cd05023 S-100A11 S-100A11: S-1 99.1 1.3E-09 2.7E-14 63.4 8.3 68 6-73 5-79 (89)
56 PF14658 EF-hand_9: EF-hand do 99.1 6.2E-10 1.3E-14 60.0 6.3 61 14-74 2-64 (66)
57 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.7E-09 6E-14 64.8 7.7 63 43-112 45-107 (116)
58 KOG2643 Ca2+ binding protein, 99.0 8.1E-09 1.7E-13 74.4 10.3 131 12-150 320-454 (489)
59 PF12763 EF-hand_4: Cytoskelet 99.0 4.1E-09 8.9E-14 62.8 7.3 69 1-72 1-69 (104)
60 KOG4251 Calcium binding protei 99.0 5.9E-09 1.3E-13 70.0 8.5 141 8-148 99-308 (362)
61 cd05030 calgranulins Calgranul 99.0 5.1E-09 1.1E-13 60.9 7.2 68 6-73 4-78 (88)
62 cd05030 calgranulins Calgranul 98.9 7.6E-09 1.7E-13 60.1 7.1 66 85-150 8-80 (88)
63 KOG0036 Predicted mitochondria 98.9 5.3E-08 1.1E-12 69.9 10.6 102 45-153 13-114 (463)
64 KOG0041 Predicted Ca2+-binding 98.8 3.1E-08 6.7E-13 64.5 7.8 106 3-109 92-199 (244)
65 KOG0031 Myosin regulatory ligh 98.8 5.8E-08 1.3E-12 60.7 8.2 63 11-73 102-164 (171)
66 KOG0751 Mitochondrial aspartat 98.7 3.7E-07 7.9E-12 67.2 11.9 134 8-149 31-175 (694)
67 KOG2643 Ca2+ binding protein, 98.7 3.3E-07 7.1E-12 66.4 11.1 130 11-148 234-383 (489)
68 KOG0041 Predicted Ca2+-binding 98.7 1.3E-07 2.8E-12 61.7 8.1 68 84-151 98-165 (244)
69 KOG0030 Myosin essential light 98.6 1.6E-07 3.5E-12 57.7 6.4 63 9-72 87-149 (152)
70 cd05024 S-100A10 S-100A10: A s 98.6 7.9E-07 1.7E-11 51.4 8.5 67 6-73 4-75 (91)
71 PF00036 EF-hand_1: EF hand; 98.6 8.4E-08 1.8E-12 43.6 3.6 25 88-112 3-27 (29)
72 KOG1029 Endocytic adaptor prot 98.6 1.1E-06 2.4E-11 67.8 10.8 150 4-158 10-266 (1118)
73 KOG0169 Phosphoinositide-speci 98.5 4.1E-06 8.8E-11 64.7 12.8 144 5-155 131-280 (746)
74 KOG0751 Mitochondrial aspartat 98.5 3.9E-07 8.4E-12 67.1 7.0 126 12-144 110-239 (694)
75 PF00036 EF-hand_1: EF hand; 98.5 2.6E-07 5.5E-12 42.0 3.9 28 122-149 1-28 (29)
76 PF13405 EF-hand_6: EF-hand do 98.5 2.8E-07 6.1E-12 42.6 3.6 29 87-115 2-31 (31)
77 cd05024 S-100A10 S-100A10: A s 98.5 2.7E-06 5.8E-11 49.2 8.3 65 85-150 8-77 (91)
78 PF12763 EF-hand_4: Cytoskelet 98.4 2.3E-06 5.1E-11 51.0 7.7 62 84-148 9-70 (104)
79 KOG2562 Protein phosphatase 2 98.4 3.2E-06 6.9E-11 61.8 9.0 133 11-149 226-379 (493)
80 KOG4666 Predicted phosphate ac 98.4 5.3E-07 1.2E-11 63.0 4.8 122 22-151 239-361 (412)
81 PF14788 EF-hand_10: EF hand; 98.4 2.3E-06 5.1E-11 43.6 5.7 47 26-72 1-47 (51)
82 PF13405 EF-hand_6: EF-hand do 98.4 7.6E-07 1.6E-11 41.2 3.6 30 11-40 1-31 (31)
83 KOG0038 Ca2+-binding kinase in 98.4 3.9E-06 8.4E-11 52.2 7.4 101 14-114 75-178 (189)
84 PF14788 EF-hand_10: EF hand; 98.3 5.7E-06 1.2E-10 42.2 5.8 50 101-150 1-50 (51)
85 PF13202 EF-hand_5: EF hand; P 98.3 1.8E-06 3.8E-11 37.8 3.1 23 88-110 2-24 (25)
86 PRK12309 transaldolase/EF-hand 98.2 5.3E-06 1.2E-10 60.8 6.7 53 85-150 334-386 (391)
87 KOG0377 Protein serine/threoni 98.2 8.1E-06 1.8E-10 59.6 7.4 65 48-112 549-614 (631)
88 PRK12309 transaldolase/EF-hand 98.1 1.6E-05 3.4E-10 58.3 8.0 59 39-113 327-385 (391)
89 KOG0046 Ca2+-binding actin-bun 98.1 1.4E-05 3E-10 59.5 7.6 71 2-73 11-84 (627)
90 PF13202 EF-hand_5: EF hand; P 98.1 6.5E-06 1.4E-10 35.9 3.0 24 12-35 1-24 (25)
91 PF10591 SPARC_Ca_bdg: Secrete 98.0 3.7E-06 8E-11 51.1 1.8 65 40-109 48-112 (113)
92 KOG4251 Calcium binding protei 97.9 4.3E-05 9.3E-10 51.8 5.9 70 45-114 100-169 (362)
93 PF09279 EF-hand_like: Phospho 97.9 9.9E-05 2.1E-09 42.3 6.7 68 86-154 1-74 (83)
94 KOG0040 Ca2+-binding actin-bun 97.9 5.9E-05 1.3E-09 62.5 7.4 67 85-151 2253-2326(2399)
95 PF10591 SPARC_Ca_bdg: Secrete 97.7 3E-05 6.4E-10 47.1 2.9 61 84-146 53-113 (113)
96 KOG1707 Predicted Ras related/ 97.6 0.00097 2.1E-08 50.8 9.5 140 3-148 188-376 (625)
97 KOG0046 Ca2+-binding actin-bun 97.5 0.00069 1.5E-08 50.8 7.2 64 85-149 19-85 (627)
98 PF05042 Caleosin: Caleosin re 97.4 0.0028 6.1E-08 41.0 8.6 138 9-148 6-165 (174)
99 KOG4666 Predicted phosphate ac 97.4 0.00064 1.4E-08 48.1 5.8 102 10-115 259-361 (412)
100 KOG4065 Uncharacterized conser 97.3 0.0018 3.8E-08 38.9 6.2 58 89-146 71-142 (144)
101 PF09279 EF-hand_like: Phospho 97.2 0.0017 3.6E-08 37.1 5.7 62 11-73 1-68 (83)
102 smart00054 EFh EF-hand, calciu 97.2 0.00065 1.4E-08 29.7 3.0 26 12-37 2-27 (29)
103 smart00054 EFh EF-hand, calciu 97.1 0.0011 2.4E-08 28.9 3.5 23 89-111 4-26 (29)
104 KOG0998 Synaptic vesicle prote 97.1 0.0012 2.6E-08 53.4 5.6 147 2-153 121-349 (847)
105 KOG1955 Ral-GTPase effector RA 97.1 0.0026 5.5E-08 47.7 6.5 69 3-73 224-292 (737)
106 KOG0035 Ca2+-binding actin-bun 97.0 0.017 3.6E-07 46.6 10.5 104 3-109 740-848 (890)
107 PF09069 EF-hand_3: EF-hand; 96.8 0.013 2.9E-07 33.9 6.9 71 85-158 3-84 (90)
108 KOG1955 Ral-GTPase effector RA 96.8 0.0054 1.2E-07 46.0 6.5 74 85-160 231-304 (737)
109 KOG4065 Uncharacterized conser 96.5 0.016 3.4E-07 34.9 5.7 67 3-71 62-142 (144)
110 KOG1265 Phospholipase C [Lipid 96.4 0.16 3.4E-06 41.2 12.3 123 19-150 157-300 (1189)
111 PLN02952 phosphoinositide phos 96.4 0.037 7.9E-07 43.2 8.7 90 59-150 13-111 (599)
112 KOG0169 Phosphoinositide-speci 96.3 0.078 1.7E-06 42.0 9.9 100 44-150 134-233 (746)
113 KOG1029 Endocytic adaptor prot 96.2 0.02 4.4E-07 45.3 6.3 71 87-160 18-88 (1118)
114 KOG0042 Glycerol-3-phosphate d 96.1 0.025 5.4E-07 43.4 6.1 72 3-74 586-657 (680)
115 KOG3555 Ca2+-binding proteogly 95.9 0.032 6.9E-07 40.1 5.8 99 10-115 211-312 (434)
116 KOG2243 Ca2+ release channel ( 95.8 0.02 4.3E-07 48.4 5.0 64 90-154 4062-4125(5019)
117 PF05517 p25-alpha: p25-alpha 95.8 0.12 2.6E-06 33.3 7.7 57 94-150 11-70 (154)
118 PF05517 p25-alpha: p25-alpha 95.7 0.22 4.8E-06 32.1 8.6 61 13-73 2-68 (154)
119 PF05042 Caleosin: Caleosin re 95.5 0.1 2.2E-06 34.0 6.6 40 118-157 93-134 (174)
120 KOG3555 Ca2+-binding proteogly 95.3 0.04 8.6E-07 39.7 4.6 67 5-75 245-311 (434)
121 KOG0042 Glycerol-3-phosphate d 95.1 0.081 1.8E-06 40.7 5.8 63 87-149 595-657 (680)
122 KOG4347 GTPase-activating prot 95.0 0.058 1.3E-06 42.0 4.9 50 86-135 556-605 (671)
123 KOG0998 Synaptic vesicle prote 94.8 0.04 8.7E-07 44.9 3.8 143 5-152 6-193 (847)
124 PF08726 EFhand_Ca_insen: Ca2+ 94.7 0.032 7E-07 30.6 2.3 54 84-145 5-65 (69)
125 KOG3866 DNA-binding protein of 94.2 0.27 5.8E-06 35.1 6.3 62 89-150 248-325 (442)
126 KOG4347 GTPase-activating prot 94.2 0.11 2.5E-06 40.4 4.8 102 2-107 496-612 (671)
127 KOG1264 Phospholipase C [Lipid 94.1 0.32 7E-06 39.3 7.2 149 3-152 136-296 (1267)
128 KOG2243 Ca2+ release channel ( 93.6 0.19 4.1E-06 43.0 5.4 58 15-73 4062-4119(5019)
129 PRK09430 djlA Dna-J like membr 93.4 2 4.3E-05 30.4 9.9 103 23-130 68-175 (267)
130 KOG4578 Uncharacterized conser 93.3 0.083 1.8E-06 37.9 2.6 61 48-113 335-398 (421)
131 KOG0035 Ca2+-binding actin-bun 92.7 0.48 1E-05 38.7 6.3 69 84-152 746-819 (890)
132 KOG4578 Uncharacterized conser 92.4 0.17 3.6E-06 36.4 3.1 63 87-151 335-400 (421)
133 PF08976 DUF1880: Domain of un 92.3 0.18 4E-06 30.5 2.8 31 43-73 4-34 (118)
134 cd07313 terB_like_2 tellurium 92.2 1.3 2.9E-05 26.1 6.6 81 24-108 13-95 (104)
135 PLN02952 phosphoinositide phos 91.7 2.3 5E-05 33.6 8.8 89 23-113 13-110 (599)
136 PLN02222 phosphoinositide phos 90.4 1.7 3.6E-05 34.3 6.9 66 83-150 23-91 (581)
137 PLN02228 Phosphoinositide phos 90.1 2.2 4.7E-05 33.6 7.3 66 83-150 22-93 (567)
138 KOG1707 Predicted Ras related/ 90.0 0.69 1.5E-05 36.0 4.6 64 3-72 308-375 (625)
139 PLN02230 phosphoinositide phos 90.0 2.3 5E-05 33.6 7.4 67 83-150 27-103 (598)
140 PF11116 DUF2624: Protein of u 90.0 2.4 5.2E-05 24.3 6.1 50 100-149 13-62 (85)
141 KOG3866 DNA-binding protein of 89.6 1.8 3.9E-05 31.1 6.0 86 28-113 225-324 (442)
142 PF14513 DAG_kinase_N: Diacylg 88.9 3.2 6.8E-05 26.3 6.2 70 25-98 6-82 (138)
143 PF07308 DUF1456: Protein of u 88.5 1.5 3.2E-05 24.0 4.1 48 102-149 14-61 (68)
144 PF08976 DUF1880: Domain of un 87.3 0.7 1.5E-05 28.1 2.5 31 118-148 4-34 (118)
145 KOG4286 Dystrophin-like protei 86.5 6 0.00013 32.1 7.7 143 10-158 420-589 (966)
146 KOG1265 Phospholipase C [Lipid 86.2 19 0.00041 30.2 11.0 89 56-153 158-253 (1189)
147 PF11116 DUF2624: Protein of u 86.2 4.6 0.0001 23.2 7.2 33 26-58 14-46 (85)
148 KOG4403 Cell surface glycoprot 85.4 3.2 7E-05 31.3 5.5 56 58-113 40-96 (575)
149 KOG2301 Voltage-gated Ca2+ cha 85.1 2.2 4.7E-05 37.7 5.2 71 3-74 1410-1484(1592)
150 KOG3449 60S acidic ribosomal p 84.3 6.9 0.00015 23.6 6.6 44 87-130 3-46 (112)
151 PF07308 DUF1456: Protein of u 82.7 5.4 0.00012 21.8 4.5 46 27-72 14-59 (68)
152 cd07316 terB_like_DjlA N-termi 81.3 8.7 0.00019 22.6 7.9 83 24-108 13-96 (106)
153 PF05099 TerB: Tellurite resis 80.9 8.4 0.00018 23.9 5.6 91 23-117 36-131 (140)
154 PF00404 Dockerin_1: Dockerin 80.8 2.2 4.7E-05 17.5 1.9 15 95-109 1-15 (21)
155 KOG3449 60S acidic ribosomal p 80.3 10 0.00022 22.8 6.4 54 13-71 4-57 (112)
156 PLN02222 phosphoinositide phos 80.3 11 0.00024 29.9 7.0 62 11-74 26-90 (581)
157 PLN02223 phosphoinositide phos 80.2 12 0.00027 29.3 7.1 67 83-150 14-93 (537)
158 PF14513 DAG_kinase_N: Diacylg 79.9 3.7 8E-05 26.0 3.6 49 99-149 5-60 (138)
159 PF12174 RST: RCD1-SRO-TAF4 (R 79.9 4.1 8.8E-05 22.5 3.4 51 24-77 6-56 (70)
160 PF08414 NADPH_Ox: Respiratory 79.8 5.7 0.00012 23.5 4.1 58 48-113 32-92 (100)
161 KOG2871 Uncharacterized conser 79.5 2.2 4.7E-05 31.5 2.8 63 10-72 309-372 (449)
162 COG1321 TroR Mn-dependent tran 79.2 14 0.00031 23.8 7.8 116 1-131 1-121 (154)
163 PF09888 DUF2115: Uncharacteri 79.1 10 0.00022 24.8 5.6 122 27-160 1-126 (163)
164 KOG2871 Uncharacterized conser 78.6 2.1 4.5E-05 31.6 2.4 62 84-145 308-370 (449)
165 KOG0039 Ferric reductase, NADH 78.4 1.8 3.9E-05 34.7 2.3 67 84-151 17-91 (646)
166 PTZ00373 60S Acidic ribosomal 77.8 13 0.00029 22.6 5.7 45 86-130 4-48 (112)
167 PLN02228 Phosphoinositide phos 77.2 19 0.00042 28.5 7.4 62 11-74 25-92 (567)
168 PLN02230 phosphoinositide phos 77.2 19 0.00042 28.7 7.5 64 10-74 29-102 (598)
169 PF04157 EAP30: EAP30/Vps36 fa 76.2 22 0.00048 24.4 7.2 115 10-130 97-214 (223)
170 PF09069 EF-hand_3: EF-hand; 75.7 13 0.00029 21.6 7.4 62 10-74 3-75 (90)
171 PF12174 RST: RCD1-SRO-TAF4 (R 75.5 3.9 8.3E-05 22.6 2.5 27 87-113 27-53 (70)
172 PF13623 SurA_N_2: SurA N-term 75.3 19 0.0004 23.0 6.6 40 108-147 96-145 (145)
173 cd07313 terB_like_2 tellurium 75.0 6.5 0.00014 23.1 3.7 53 60-113 13-65 (104)
174 PF01023 S_100: S-100/ICaBP ty 74.4 8.9 0.00019 18.9 4.2 32 7-38 3-36 (44)
175 cd07176 terB tellurite resista 74.1 13 0.00028 21.9 4.9 79 24-107 16-99 (111)
176 PF07128 DUF1380: Protein of u 73.6 20 0.00044 22.7 5.8 59 102-160 27-90 (139)
177 COG3763 Uncharacterized protei 73.6 13 0.00027 20.5 4.1 32 24-55 36-67 (71)
178 KOG4004 Matricellular protein 73.1 1.4 3.1E-05 29.5 0.5 54 98-153 201-254 (259)
179 PF09068 EF-hand_2: EF hand; 73.0 20 0.00043 22.3 7.6 27 87-113 99-125 (127)
180 cd05833 Ribosomal_P2 Ribosomal 72.7 18 0.0004 21.8 5.7 57 88-149 4-60 (109)
181 PF08461 HTH_12: Ribonuclease 71.8 13 0.00029 20.1 4.1 38 97-134 9-46 (66)
182 TIGR01848 PHA_reg_PhaR polyhyd 71.7 18 0.00039 21.7 4.8 70 54-136 11-84 (107)
183 PF03672 UPF0154: Uncharacteri 71.0 15 0.00032 19.9 4.3 32 24-55 29-60 (64)
184 PLN02223 phosphoinositide phos 68.5 34 0.00073 27.0 6.9 64 10-74 16-92 (537)
185 KOG4004 Matricellular protein 67.9 3.4 7.4E-05 27.8 1.4 48 59-111 201-248 (259)
186 PF07879 PHB_acc_N: PHB/PHA ac 66.8 15 0.00033 19.8 3.4 22 92-113 10-31 (64)
187 PF03979 Sigma70_r1_1: Sigma-7 65.4 11 0.00024 21.3 3.1 34 98-133 18-51 (82)
188 COG4807 Uncharacterized protei 64.7 30 0.00066 21.7 4.9 110 30-149 19-145 (155)
189 PF07499 RuvA_C: RuvA, C-termi 64.3 17 0.00036 18.1 4.5 40 104-147 3-42 (47)
190 PLN00138 large subunit ribosom 64.3 30 0.00066 21.1 5.7 42 89-130 5-46 (113)
191 PRK00523 hypothetical protein; 64.2 23 0.00049 19.7 4.0 32 24-55 37-68 (72)
192 PF09336 Vps4_C: Vps4 C termin 63.0 16 0.00034 19.6 3.1 26 101-126 29-54 (62)
193 KOG2301 Voltage-gated Ca2+ cha 62.0 8.1 0.00018 34.4 2.8 70 84-154 1416-1489(1592)
194 KOG0506 Glutaminase (contains 62.0 75 0.0016 24.8 7.7 59 15-73 91-157 (622)
195 TIGR01639 P_fal_TIGR01639 Plas 61.7 23 0.0005 18.8 3.9 31 25-55 8-38 (61)
196 PF02761 Cbl_N2: CBL proto-onc 61.7 29 0.00063 20.0 7.4 43 101-143 22-64 (85)
197 KOG4301 Beta-dystrobrevin [Cyt 60.7 17 0.00037 26.7 3.8 61 88-149 113-173 (434)
198 PHA02105 hypothetical protein 60.2 24 0.00052 18.6 3.7 47 26-72 4-55 (68)
199 COG5069 SAC6 Ca2+-binding acti 58.8 27 0.00059 27.1 4.7 90 5-100 480-569 (612)
200 PRK09430 djlA Dna-J like membr 58.8 43 0.00094 23.8 5.6 52 97-149 67-120 (267)
201 PRK04387 hypothetical protein; 58.8 23 0.0005 20.6 3.5 63 4-67 11-74 (90)
202 KOG0506 Glutaminase (contains 58.1 43 0.00093 26.1 5.6 60 90-149 91-158 (622)
203 PF08414 NADPH_Ox: Respiratory 57.9 38 0.00082 20.1 6.6 60 8-72 28-90 (100)
204 PF13720 Acetyltransf_11: Udp 57.1 35 0.00075 19.4 4.8 49 2-55 26-74 (83)
205 PRK00819 RNA 2'-phosphotransfe 56.9 33 0.00072 22.8 4.5 43 21-66 28-70 (179)
206 PF10437 Lip_prot_lig_C: Bacte 56.2 34 0.00074 19.3 4.1 43 103-147 43-86 (86)
207 PF01885 PTS_2-RNA: RNA 2'-pho 55.4 25 0.00055 23.5 3.8 35 95-129 26-60 (186)
208 PTZ00373 60S Acidic ribosomal 55.4 46 0.00099 20.3 6.4 52 14-70 7-58 (112)
209 PF01885 PTS_2-RNA: RNA 2'-pho 55.3 29 0.00063 23.2 4.1 36 21-56 27-62 (186)
210 TIGR03573 WbuX N-acetyl sugar 53.5 40 0.00087 24.9 4.9 42 99-146 300-341 (343)
211 KOG3077 Uncharacterized conser 53.4 79 0.0017 22.5 11.0 64 9-72 63-127 (260)
212 PRK01844 hypothetical protein; 53.2 38 0.00083 18.8 4.0 32 24-55 36-67 (72)
213 PRK06253 O-phosphoseryl-tRNA s 53.1 1.1E+02 0.0025 24.2 7.3 71 6-76 85-156 (529)
214 PRK00819 RNA 2'-phosphotransfe 53.0 35 0.00076 22.7 4.1 32 96-127 28-59 (179)
215 TIGR00470 sepS O-phosphoseryl- 52.3 1.1E+02 0.0025 24.0 7.0 71 6-77 85-156 (533)
216 COG4359 Uncharacterized conser 52.2 72 0.0016 21.6 6.0 81 58-152 9-90 (220)
217 PF11422 IBP39: Initiator bind 52.2 68 0.0015 21.3 7.1 68 49-117 22-91 (181)
218 KOG4286 Dystrophin-like protei 51.8 80 0.0017 26.2 6.4 62 86-148 471-532 (966)
219 COG4476 Uncharacterized protei 50.8 36 0.00078 19.5 3.3 61 5-66 12-73 (90)
220 KOG1451 Oligophrenin-1 and rel 50.3 1.2E+02 0.0027 24.5 7.1 74 87-160 507-580 (812)
221 PF05872 DUF853: Bacterial pro 50.1 1.1E+02 0.0024 24.0 6.7 38 3-40 121-158 (502)
222 smart00513 SAP Putative DNA-bi 50.1 27 0.00058 16.0 2.5 17 101-117 3-19 (35)
223 TIGR02675 tape_meas_nterm tape 49.7 20 0.00043 19.9 2.3 13 60-72 28-40 (75)
224 PF05256 UPF0223: Uncharacteri 48.7 48 0.001 19.3 3.7 62 4-66 11-73 (88)
225 COG4103 Uncharacterized protei 48.6 70 0.0015 20.5 7.6 94 14-113 34-129 (148)
226 PF12419 DUF3670: SNF2 Helicas 47.8 70 0.0015 20.2 4.9 49 98-146 80-138 (141)
227 PF13551 HTH_29: Winged helix- 47.3 57 0.0012 19.0 6.4 51 4-54 58-110 (112)
228 PF03250 Tropomodulin: Tropomo 47.2 48 0.001 21.3 3.8 22 2-23 22-43 (147)
229 PF02037 SAP: SAP domain; Int 47.0 26 0.00057 16.1 2.1 17 101-117 3-19 (35)
230 PF13608 Potyvirid-P3: Protein 47.0 38 0.00083 26.1 4.1 32 8-40 287-318 (445)
231 KOG4403 Cell surface glycoprot 47.0 1.3E+02 0.0029 23.2 6.9 60 9-72 67-127 (575)
232 KOG1954 Endocytosis/signaling 46.1 51 0.0011 25.0 4.4 54 13-69 447-500 (532)
233 PF11020 DUF2610: Domain of un 45.4 57 0.0012 18.5 3.8 37 114-150 42-78 (82)
234 PF13075 DUF3939: Protein of u 45.3 10 0.00022 23.9 0.7 48 101-152 9-56 (140)
235 cd05833 Ribosomal_P2 Ribosomal 45.3 69 0.0015 19.4 6.4 54 14-72 5-58 (109)
236 PRK14074 rpsF 30S ribosomal pr 45.2 92 0.002 21.9 5.2 70 2-74 12-81 (257)
237 COG2818 Tag 3-methyladenine DN 44.2 29 0.00063 23.2 2.7 45 83-127 53-97 (188)
238 cd03035 ArsC_Yffb Arsenate Red 43.8 24 0.00053 21.0 2.2 51 100-153 34-87 (105)
239 PF05872 DUF853: Bacterial pro 42.9 90 0.002 24.4 5.3 29 86-114 129-157 (502)
240 PF11848 DUF3368: Domain of un 42.7 46 0.00099 16.6 3.5 33 98-130 14-47 (48)
241 COG5562 Phage envelope protein 41.7 27 0.00058 22.0 2.1 26 125-150 76-101 (137)
242 cd04411 Ribosomal_P1_P2_L12p R 41.4 79 0.0017 19.0 6.2 43 102-149 17-59 (105)
243 KOG1954 Endocytosis/signaling 41.1 75 0.0016 24.2 4.6 57 86-145 445-501 (532)
244 PF01325 Fe_dep_repress: Iron 40.9 57 0.0012 17.2 4.8 54 4-66 2-55 (60)
245 cd07894 Adenylation_RNA_ligase 40.8 95 0.0021 23.1 5.2 37 22-58 137-183 (342)
246 PF07199 DUF1411: Protein of u 40.0 1.2E+02 0.0025 20.5 6.1 26 13-38 125-150 (194)
247 PF07862 Nif11: Nitrogen fixat 39.6 52 0.0011 16.3 2.8 21 103-123 28-48 (49)
248 PRK06402 rpl12p 50S ribosomal 38.9 89 0.0019 18.9 6.1 40 101-145 16-55 (106)
249 KOG1785 Tyrosine kinase negati 38.7 1.8E+02 0.0039 22.3 7.8 85 24-114 188-275 (563)
250 PLN00138 large subunit ribosom 38.3 94 0.002 19.0 5.3 51 15-70 6-56 (113)
251 PF09107 SelB-wing_3: Elongati 37.9 59 0.0013 16.5 3.4 31 99-134 8-38 (50)
252 PF08672 APC2: Anaphase promot 37.6 67 0.0015 17.1 3.2 33 4-38 12-44 (60)
253 PF11829 DUF3349: Protein of u 37.2 91 0.002 18.5 4.2 46 27-72 20-68 (96)
254 TIGR01565 homeo_ZF_HD homeobox 36.7 68 0.0015 16.9 4.9 39 2-41 6-44 (58)
255 PRK13510 sulfur transfer compl 36.7 37 0.00081 19.9 2.2 23 134-156 73-95 (95)
256 TIGR00135 gatC glutamyl-tRNA(G 35.8 90 0.0019 18.0 3.8 29 27-55 1-29 (93)
257 TIGR00624 tag DNA-3-methyladen 35.4 46 0.001 22.2 2.6 46 83-128 51-96 (179)
258 KOG4301 Beta-dystrobrevin [Cyt 35.2 1.9E+02 0.0042 21.6 8.1 95 48-151 112-217 (434)
259 KOG4070 Putative signal transd 35.2 39 0.00084 21.8 2.1 13 135-147 71-83 (180)
260 PF09373 PMBR: Pseudomurein-bi 35.1 49 0.0011 15.0 2.0 13 100-112 3-15 (33)
261 COG4103 Uncharacterized protei 34.8 1.3E+02 0.0027 19.4 4.7 58 89-149 34-94 (148)
262 PF02337 Gag_p10: Retroviral G 34.6 98 0.0021 18.1 4.2 15 114-128 21-35 (90)
263 TIGR03853 matur_matur probable 34.1 92 0.002 17.6 6.1 49 103-151 3-58 (77)
264 KOG2557 Uncharacterized conser 33.9 1.5E+02 0.0032 22.5 5.1 51 60-113 72-122 (427)
265 PF00046 Homeobox: Homeobox do 33.6 71 0.0015 16.1 4.5 42 2-50 5-46 (57)
266 PF06648 DUF1160: Protein of u 32.2 1.3E+02 0.0028 18.7 4.4 28 27-54 51-79 (122)
267 PF08100 Dimerisation: Dimeris 32.1 43 0.00092 17.1 1.7 23 90-112 11-33 (51)
268 PRK14981 DNA-directed RNA poly 31.6 1.2E+02 0.0027 18.3 3.9 25 104-128 81-105 (112)
269 PF05383 La: La domain; Inter 31.2 45 0.00097 17.7 1.7 17 18-34 23-39 (61)
270 TIGR01209 RNA ligase, Pab1020 30.7 2.3E+02 0.005 21.5 5.7 27 16-42 163-189 (374)
271 KOG1264 Phospholipase C [Lipid 30.6 3.2E+02 0.007 23.4 6.8 100 13-113 184-293 (1267)
272 PRK10353 3-methyl-adenine DNA 30.6 45 0.00098 22.4 2.0 46 83-128 52-97 (187)
273 PF10678 DUF2492: Protein of u 30.3 1.1E+02 0.0024 17.3 6.0 50 102-151 4-60 (78)
274 PF08671 SinI: Anti-repressor 30.0 64 0.0014 14.5 3.0 11 138-148 17-27 (30)
275 CHL00185 ycf59 magnesium-proto 29.9 2.3E+02 0.0051 21.0 6.2 90 37-134 32-123 (351)
276 PF07393 Sec10: Exocyst comple 29.7 3.2E+02 0.007 22.6 7.5 28 119-149 671-698 (710)
277 PRK13654 magnesium-protoporphy 29.7 2.4E+02 0.0052 21.0 6.2 90 37-134 36-127 (355)
278 PRK09462 fur ferric uptake reg 28.7 1.6E+02 0.0034 18.6 5.1 32 24-55 31-62 (148)
279 PF12631 GTPase_Cys_C: Catalyt 28.4 1.1E+02 0.0024 16.7 3.3 46 85-130 23-72 (73)
280 COG0721 GatC Asp-tRNAAsn/Glu-t 28.4 1.3E+02 0.0029 17.7 3.7 30 101-130 2-31 (96)
281 TIGR02787 codY_Gpos GTP-sensin 28.2 1.7E+02 0.0037 20.7 4.5 30 4-34 177-206 (251)
282 PF11593 Med3: Mediator comple 28.1 2.5E+02 0.0053 21.2 5.4 50 25-75 6-55 (379)
283 PF02459 Adeno_terminal: Adeno 28.0 2.6E+02 0.0057 22.3 5.8 47 87-133 457-503 (548)
284 PRK00034 gatC aspartyl/glutamy 28.0 1.3E+02 0.0028 17.4 3.9 30 101-130 2-31 (95)
285 PF04214 DUF411: Protein of un 27.9 45 0.00098 18.4 1.4 25 135-160 37-61 (70)
286 TIGR02029 AcsF magnesium-proto 27.8 2.5E+02 0.0055 20.7 6.0 90 37-134 26-117 (337)
287 TIGR02522 pilus_cpaD pilus (Ca 27.7 1.7E+02 0.0037 19.9 4.4 65 2-68 53-130 (198)
288 PF00690 Cation_ATPase_N: Cati 27.5 1.1E+02 0.0023 16.3 3.5 27 89-115 8-34 (69)
289 PF08044 DUF1707: Domain of un 26.6 1E+02 0.0022 15.8 3.1 47 5-53 4-50 (53)
290 PRK12821 aspartyl/glutamyl-tRN 26.5 2E+02 0.0043 22.5 4.8 52 4-55 358-417 (477)
291 KOG2419 Phosphatidylserine dec 26.4 40 0.00087 27.3 1.4 63 86-148 438-532 (975)
292 PF07492 Trehalase_Ca-bi: Neut 26.2 19 0.00041 16.2 -0.2 17 125-141 3-19 (30)
293 cd00086 homeodomain Homeodomai 26.1 99 0.0022 15.5 6.3 44 2-52 5-48 (59)
294 PF09494 Slx4: Slx4 endonuclea 26.1 1.2E+02 0.0025 16.2 3.6 16 100-115 43-58 (64)
295 KOG0039 Ferric reductase, NADH 25.9 2.1E+02 0.0045 23.5 5.3 83 24-113 2-89 (646)
296 KOG4629 Predicted mechanosensi 25.9 2.7E+02 0.0058 23.3 5.7 59 86-151 405-463 (714)
297 COG1460 Uncharacterized protei 25.9 1.7E+02 0.0036 18.0 3.8 28 103-130 81-108 (114)
298 PF04157 EAP30: EAP30/Vps36 fa 25.8 2.3E+02 0.0049 19.5 10.5 13 30-42 61-73 (223)
299 PF11363 DUF3164: Protein of u 25.8 2.2E+02 0.0047 19.3 6.2 29 44-72 117-145 (195)
300 TIGR03798 ocin_TIGR03798 bacte 25.7 1.2E+02 0.0025 16.1 3.8 26 26-51 24-49 (64)
301 PF12486 DUF3702: ImpA domain 25.7 1.3E+02 0.0028 19.4 3.3 31 7-37 66-96 (148)
302 KOG3442 Uncharacterized conser 25.5 1.6E+02 0.0034 18.4 3.5 41 61-101 54-94 (132)
303 PF11907 DUF3427: Domain of un 24.8 2.6E+02 0.0057 19.9 6.2 48 3-56 10-57 (274)
304 PF14848 HU-DNA_bdg: DNA-bindi 24.8 1.8E+02 0.0038 17.9 4.2 33 23-55 25-57 (124)
305 cd08032 LARP_7 La RNA-binding 24.6 1E+02 0.0022 17.6 2.4 28 90-117 28-55 (82)
306 TIGR03573 WbuX N-acetyl sugar 24.4 2.5E+02 0.0055 20.8 5.1 66 31-111 275-342 (343)
307 PF03352 Adenine_glyco: Methyl 24.3 44 0.00096 22.2 1.1 48 83-130 47-94 (179)
308 COG2058 RPP1A Ribosomal protei 24.1 1.8E+02 0.0038 17.7 5.3 53 91-149 7-59 (109)
309 cd02977 ArsC_family Arsenate R 23.7 1.6E+02 0.0035 17.1 5.0 54 99-153 33-89 (105)
310 KOG1785 Tyrosine kinase negati 23.7 3.4E+02 0.0075 20.9 7.7 54 86-140 176-229 (563)
311 PF12949 HeH: HeH/LEM domain; 23.3 59 0.0013 15.2 1.1 17 101-117 3-19 (35)
312 PF06207 DUF1002: Protein of u 23.1 2.2E+02 0.0048 19.8 4.3 46 103-148 173-222 (225)
313 PF04695 Pex14_N: Peroxisomal 23.0 2.1E+02 0.0044 18.0 6.4 47 86-134 5-51 (136)
314 PF04558 tRNA_synt_1c_R1: Glut 23.0 98 0.0021 20.3 2.5 47 83-130 83-129 (164)
315 PF14237 DUF4339: Domain of un 22.8 72 0.0016 15.5 1.5 20 95-114 7-26 (45)
316 PRK12461 UDP-N-acetylglucosami 22.6 2.9E+02 0.0062 19.5 5.8 49 2-55 198-246 (255)
317 PRK03968 DNA primase large sub 22.6 3.5E+02 0.0076 20.6 5.4 45 22-72 117-161 (399)
318 PRK10945 gene expression modul 22.5 1.5E+02 0.0033 16.4 3.6 14 42-55 18-31 (72)
319 TIGR01529 argR_whole arginine 22.4 2.2E+02 0.0048 18.2 4.1 43 23-65 13-59 (146)
320 PF09312 SurA_N: SurA N-termin 22.4 1.9E+02 0.0042 17.5 4.1 11 138-148 99-109 (118)
321 PF08730 Rad33: Rad33; InterP 22.4 2.4E+02 0.0053 18.6 10.6 39 3-42 7-45 (170)
322 PRK09389 (R)-citramalate synth 22.2 2.3E+02 0.0049 22.3 4.7 46 106-151 322-369 (488)
323 smart00549 TAFH TAF homology. 22.0 1.7E+02 0.0036 17.2 3.0 13 60-72 37-49 (92)
324 TIGR03685 L21P_arch 50S riboso 22.0 1.9E+02 0.0042 17.4 6.0 42 101-147 16-57 (105)
325 TIGR02613 mob_myst_B mobile my 21.8 2.5E+02 0.0054 18.7 4.3 22 96-117 126-147 (186)
326 cd08330 CARD_ASC_NALP1 Caspase 21.6 1.7E+02 0.0037 16.5 4.1 50 98-152 26-75 (82)
327 cd05831 Ribosomal_P1 Ribosomal 21.3 2E+02 0.0043 17.2 4.5 32 99-130 15-46 (103)
328 PRK10391 oriC-binding nucleoid 21.2 1.6E+02 0.0036 16.2 2.9 13 43-55 14-26 (71)
329 cd00076 H4 Histone H4, one of 20.5 1.9E+02 0.0041 16.7 7.0 66 42-117 13-81 (85)
330 PLN02508 magnesium-protoporphy 20.5 3.7E+02 0.0081 20.1 6.5 88 39-134 34-123 (357)
331 PHA02773 hypothetical protein; 20.5 1.3E+02 0.0028 17.5 2.3 24 4-27 21-44 (112)
332 KOG0871 Class 2 transcription 20.4 1.4E+02 0.0029 19.3 2.6 7 102-108 114-120 (156)
333 cd03033 ArsC_15kD Arsenate Red 20.1 1.5E+02 0.0033 17.9 2.8 49 100-152 35-86 (113)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=4.9e-30 Score=161.66 Aligned_cols=147 Identities=36% Similarity=0.654 Sum_probs=137.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHh
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETIL 81 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (160)
+.++++++++++++|..+|++++|.|+..+|..+++.+|..++++++..++..++. +.+.|+|.+|+.++.......
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~-- 88 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG-- 88 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC--
Confidence 46899999999999999999999999999999999999999999999999999999 899999999999997665432
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 82 INQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
...+.+..+|+.||.+++|+|+..+|+.+++.+|..+++++++.+++.++.+++|.|+|++|++.+...+
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 3348999999999999999999999999999999999999999999999999999999999999887654
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=152.97 Aligned_cols=146 Identities=38% Similarity=0.713 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhh-
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILI- 82 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~- 82 (160)
++..++..++.+|..+|.+++|.|+..++..+++.++..+++.++..++..+|.+++|.|++.+|+.++..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 6788999999999999999999999999999999999999999999999999999999999999999986554433322
Q ss_pred -hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 83 -NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 83 -~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
..+.+..+|+.+|.+++|.||.+||+.++..+|.+.+.+++..+++.+|.+++|.|+|++|++.+..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2458999999999999999999999999999999999999999999999999999999999999864
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=3.5e-25 Score=143.04 Aligned_cols=148 Identities=37% Similarity=0.655 Sum_probs=133.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHh
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETIL 81 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (160)
.++++.++.++..+|..+|++++|.|+.++|..++..++...+...+..++..+|.+++|.|+|.+|...+...... .
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~--~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE--R 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC--C
Confidence 46889999999999999999999999999999999999888899999999999999999999999999877533211 1
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 82 INQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.....+..+|+.+|.+++|.|+.+||..++...|..++..++..++..++.+++|.|++++|..++...|
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 2336788999999999999999999999999999999999999999999999999999999999998754
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=3.1e-24 Score=137.27 Aligned_cols=146 Identities=40% Similarity=0.755 Sum_probs=131.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHh
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETIL 81 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (160)
..+++.++..++..|..+|.+++|.|+.++|..++..++..++...+..+++.+|.+++|.|+|++|+..+.......
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~-- 80 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT-- 80 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC--
Confidence 357899999999999999999999999999999999888888899999999999999999999999999875433221
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 82 INQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
.....+..+|+.+|.+++|.|+.++|+.++...|..++..++..++..+|.+++|.|+++||..++..
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 12357889999999999999999999999999998899999999999999999999999999988753
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7.7e-24 Score=131.10 Aligned_cols=147 Identities=33% Similarity=0.599 Sum_probs=136.5
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHh
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETIL 81 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (160)
+.+++++.+.++..|..+|++++|.|+.++|.-+.+++|..+..+++..++..+|+++.|.|+|++|...+...+....
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d- 103 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD- 103 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-
Confidence 4678899999999999999999999999999999999999999999999999999999999999999998765544433
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 82 INQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
+.+.+..+|+.+|.+.+|+|+..+|+.+...+|..+++.++.++++.+|.+++|.|+-++|..+++..
T Consensus 104 -t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 104 -TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred -cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999999999999999999999999998754
No 6
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=1.1e-23 Score=127.53 Aligned_cols=147 Identities=24% Similarity=0.457 Sum_probs=133.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC--CCCceeHHHHHHHhcccchh
Q 042615 1 MGGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDAN--GNGAVEFDELVNAILPDMDE 78 (160)
Q Consensus 1 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~ 78 (160)
|...+++++..++++|..||..++|+|+..+...+|+.+|.+++..++...+..+..+ .-.+++|++|+..+....++
T Consensus 2 ~~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 2 MIAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred CcccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999999999999999999988776 44689999999998776666
Q ss_pred hHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 79 TILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 79 ~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
......+.+.+-++.||++++|.|...|++++|..+|..++++++..++.-. .|.+|.|+|+.|++.+.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 6666678899999999999999999999999999999999999999999877 68889999999998765
No 7
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=4.6e-23 Score=126.84 Aligned_cols=143 Identities=23% Similarity=0.455 Sum_probs=131.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHh
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETIL 81 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (160)
+.+++.+|++++++|..+|.|++|.|..++++..+..+|..++++++..++... .|.|+|.-|+..+...+.....
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCH
Confidence 357889999999999999999999999999999999999999999999999765 6899999999998766554433
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 82 INQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
.+.+..+|..||.+++|.|..+.++.+|...|..++++++..+++.+..+..|.|+|..|+..+...
T Consensus 100 --e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 100 --EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred --HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 4789999999999999999999999999999999999999999999999999999999999998843
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.88 E-value=6.1e-21 Score=124.43 Aligned_cols=148 Identities=31% Similarity=0.516 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHhhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCc-eeHHHHHHHhcccchhhHh
Q 042615 4 LHIDQLNQLRDIFARFDMD-SDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGA-VEFDELVNAILPDMDETIL 81 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~ 81 (160)
++..++.++...|..++++ ++|.|+.++|..+.. +..++ ...++++.++.+++|. |++++|+..+.........
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 8889999999999999999 999999999999883 33333 3477888888888887 9999999999877665544
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCC--HHH----HHHHHHhhccCCCcceeHHHHHHHHhhcCCCc
Q 042615 82 INQEQLLEIFRAFDRDGNGYITAAELAGSMAKM-GQPLT--YKE----LTEMIKEADTNGDGVISFNEFAAVMAKSTLDF 154 (160)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~-~~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 154 (160)
. .++.-+|+.+|.+++|.|+.+|+..++..+ +...+ ++. ++.++..+|.+++|.|+++||++++.+.|...
T Consensus 103 ~--~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~ 180 (187)
T KOG0034|consen 103 R--EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLL 180 (187)
T ss_pred H--HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHH
Confidence 3 689999999999999999999999999985 43334 333 55678899999999999999999999987554
Q ss_pred ccC
Q 042615 155 FGL 157 (160)
Q Consensus 155 ~~~ 157 (160)
-.+
T Consensus 181 ~~m 183 (187)
T KOG0034|consen 181 EKM 183 (187)
T ss_pred HHc
Confidence 443
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=4.5e-18 Score=110.98 Aligned_cols=133 Identities=24% Similarity=0.385 Sum_probs=121.6
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHH
Q 042615 9 LNQLRDIFARFDMDSDGSLTILELAALLRSLG-LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQL 87 (160)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (160)
...+...|...|.++.|.|+.+|+..+|.... -+.+.+.|..|+..+|.+.+|+|+++||..... ....+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~---------~i~~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK---------YINQW 126 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH---------HHHHH
Confidence 44788899999999999999999999998544 568899999999999999999999999988862 22789
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 88 LEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 88 ~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
+.+|+.+|.|++|.|+..||++++..+|..+++...+.+++.++....|.|.+++|+.++...
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998889999999999998765
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.79 E-value=5e-18 Score=110.89 Aligned_cols=146 Identities=23% Similarity=0.354 Sum_probs=118.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhH
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGL-KPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETI 80 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 80 (160)
+++++.++..+.+-|.. ..++|.++.++|+.++..+.. .-+...+..+++.+|.+++|.|++.||+..++.......
T Consensus 21 t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ 98 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL 98 (193)
T ss_pred cCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH
Confidence 35677777777666666 235789999999999998764 566777999999999999999999999998876654443
Q ss_pred hhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc----CC-------CCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 81 LINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM----GQ-------PLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 81 ~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
. +.+..+|+.+|.+++|.|+++|+..++.++ +. ....+.+..+|..+|.|++|.||++||......
T Consensus 99 e---ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 E---EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred H---HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 3 677788999999999999999999998774 21 124556788999999999999999999998877
Q ss_pred cCC
Q 042615 150 STL 152 (160)
Q Consensus 150 ~~~ 152 (160)
.+.
T Consensus 176 d~~ 178 (193)
T KOG0044|consen 176 DPS 178 (193)
T ss_pred CHH
Confidence 653
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.79 E-value=1.2e-17 Score=117.93 Aligned_cols=141 Identities=21% Similarity=0.379 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHh
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLK-PSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETIL 81 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 81 (160)
...++.-.+++.+|..+|.+++|.++..++.+.+..+..+ ........+++..|.+.+|+++|++|.+.+.
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-------- 78 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD-------- 78 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH--------
Confidence 3456666789999999999999999999999999988876 7788889999999999999999999999872
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 82 INQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.....+.++|+..|.+.||.|..+|+...++.+|.++++++++++++.+|.++++.|+++||.+++.-.|
T Consensus 79 ~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 2236788999999999999999999999999999999999999999999999999999999999988665
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.58 E-value=5.9e-14 Score=106.65 Aligned_cols=105 Identities=23% Similarity=0.335 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhhcCCCCCceeHHHHHHHhcccch
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLG-LKPSGDQ---IHVLLANMDANGNGAVEFDELVNAILPDMD 77 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 77 (160)
+.+...++.++++.|..+|++++|.+ +..+++.++ ..+++++ +..++..+|.+++|.|+++||+.++.....
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 45788899999999999999999997 888888888 5888887 899999999999999999999998864321
Q ss_pred hhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 78 ETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 78 ~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
....+.+..+|+.+|++++|.|+.+||+.++..
T Consensus 211 ---~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 211 ---LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred ---CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 234568999999999999999999999999988
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.8e-14 Score=98.35 Aligned_cols=139 Identities=23% Similarity=0.306 Sum_probs=113.9
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhh--hH
Q 042615 8 QLNQLRDIFARFDMDSDGSLTILELAALLRS-LGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILI--NQ 84 (160)
Q Consensus 8 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--~~ 84 (160)
.+.+-+..|+..|.|++|.++.+||-.+|.- -...+....|..-+.-.|+|++|.|+++||+.-+-....+.... -.
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 4566788999999999999999999998853 23457777888889999999999999999998764433211111 01
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHH
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAV 146 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 146 (160)
..-.+++...|+|+||+++.+|++.++.+.+......+...++...|.|++|++|++|.+.-
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 23447888899999999999999999999888888999999999999999999999998753
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.5e-14 Score=96.29 Aligned_cols=145 Identities=25% Similarity=0.332 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccc-------h--
Q 042615 7 DQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDM-------D-- 77 (160)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-------~-- 77 (160)
+...++..++..+|.+++|+|+..++...+....-.....+..+-+..+|.+.+|.|+|+++...+.... .
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 3457889999999999999999999999887655555566778888899999999999999998875321 0
Q ss_pred --hhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 78 --ETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ-PLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 78 --~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.........-++.|+..|.|++|.++.+||..++.+-.. .+.+--+++.++..|.|++|.|+++||+.=+-...
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 111122234456799999999999999999999988654 46777788899999999999999999998766554
No 15
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.51 E-value=3.9e-13 Score=88.12 Aligned_cols=93 Identities=28% Similarity=0.501 Sum_probs=78.1
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHH
Q 042615 9 LNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLL 88 (160)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (160)
+..++.+|..+|+|++|.|+..||+.+|..+|+.++.+..+.++++++..++|.|.+++|++++.. ...+.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~---------L~~lt 193 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV---------LQRLT 193 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH---------HHHHH
Confidence 566788999999999999999999999999999999999999999998877899999999998732 26788
Q ss_pred HHHHHhcCCCCCc--ccHHHHHHH
Q 042615 89 EIFRAFDRDGNGY--ITAAELAGS 110 (160)
Q Consensus 89 ~~f~~~D~~~~G~--i~~~e~~~~ 110 (160)
++|+..|.+.+|. |+.++|..+
T Consensus 194 ~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 194 EAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHHHHhccccceeEEEeHHHHHHH
Confidence 8999999998885 455665543
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.48 E-value=3.5e-13 Score=74.39 Aligned_cols=62 Identities=42% Similarity=0.837 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHH----HHHHHHhhccCCCcceeHHHHHHHH
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKE----LTEMIKEADTNGDGVISFNEFAAVM 147 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 147 (160)
++..+|+.+|.+++|.|+.+||+.++..++...+... +..+++.+|.+++|.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3678999999999999999999999999987655544 5555999999999999999999875
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=4.8e-13 Score=77.55 Aligned_cols=67 Identities=27% Similarity=0.398 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 85 EQLLEIFRAFDR-DGNGYITAAELAGSMAK-MGQPLTY-KELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 85 ~~~~~~f~~~D~-~~~G~i~~~e~~~~~~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
..+..+|+.||+ +++|.|+..||+.++.. +|..++. .++..+++.+|.|++|.|+|+||+.++....
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 578899999999 99999999999999999 8877787 8999999999999999999999999988754
No 18
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.44 E-value=3.2e-12 Score=78.69 Aligned_cols=145 Identities=19% Similarity=0.334 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHhhhcCC-----------CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 4 LHIDQLNQLRDIFARFDMD-----------SDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~-----------~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
++..+|-++...|..+.++ ..-.++.+.+.+. ..+.-++- -+++...+..+|.|.+++++|+.++
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELkenpf---k~ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKENPF---KRRICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcChH---HHHHHHHhccCCCCcccHHHHHHHH
Confidence 4567777888888887664 1234555555543 33333333 3556667778999999999999998
Q ss_pred cccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHH----HHHHHhhccCCCcceeHHHHHHHH
Q 042615 73 LPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM-GQPLTYKEL----TEMIKEADTNGDGVISFNEFAAVM 147 (160)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~-~~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~l 147 (160)
+....... ..-.+..+|+.+|-++++.|...++...+..+ ...++++++ .++++.+|.+++|++++.||.+.+
T Consensus 98 SV~sE~AP--rdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 98 SVFSEMAP--RDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHHhhCh--HHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 65433222 12356678999999999999999999999885 335777774 457888899999999999999999
Q ss_pred hhcCCCc
Q 042615 148 AKSTLDF 154 (160)
Q Consensus 148 ~~~~~~~ 154 (160)
.+.|.=+
T Consensus 176 ~raPDFl 182 (189)
T KOG0038|consen 176 LRAPDFL 182 (189)
T ss_pred HhCcchH
Confidence 9887433
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=9.1e-13 Score=72.68 Aligned_cols=62 Identities=34% Similarity=0.667 Sum_probs=51.7
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGD----QIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
+++.+|..+|.+++|.|+.+||..++..++...+.. .+..+++.+|++++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999988665543 45555888999999999999988753
No 20
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-12 Score=85.16 Aligned_cols=103 Identities=19% Similarity=0.330 Sum_probs=86.3
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccch--------hhHhh
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMD--------ETILI 82 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~--------~~~~~ 82 (160)
....+|+.+|.+++|.|+..||..+|..+.....++-+...|+.||.+++|.|++++++..+..... .....
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~ 144 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEET 144 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccccc
Confidence 3567899999999999999999999988777788888999999999999999999999988743221 11222
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
..+....+|..+|.|+||.||.+||...+.+
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 3467888999999999999999999988764
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.42 E-value=1.3e-12 Score=75.74 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhcCCCCCceeHHHHHHHhcc
Q 042615 6 IDQLNQLRDIFARFDM-DSDGSLTILELAALLRS-LGLKPSG-DQIHVLLANMDANGNGAVEFDELVNAILP 74 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (160)
+.-+..+..+|+.||+ +++|.|+..+|+.++.. ++..++. .++..+++.+|.+++|.|+|+||+..+..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4567889999999999 99999999999999998 8877887 89999999999999999999999998743
No 22
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=4.8e-12 Score=81.10 Aligned_cols=104 Identities=26% Similarity=0.411 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCC-----C
Q 042615 45 GDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPL-----T 119 (160)
Q Consensus 45 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~-----~ 119 (160)
..++..+|..+|.+++|.|+-.++-.++...-.. .....+..++..+|.+++|.|+.++|..++...+... +
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~---~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN---PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence 3567889999999999999999998888655333 3347899999999999999999999999998865432 3
Q ss_pred HHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 120 YKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 120 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.+++.+.|+.+|.+++|.|++.|+.+++...-
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 45999999999999999999999999998753
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.40 E-value=3.7e-12 Score=73.90 Aligned_cols=66 Identities=23% Similarity=0.488 Sum_probs=61.2
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRAFD-RDGNG-YITAAELAGSMAK-----MGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~~D-~~~~G-~i~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..+..+|+.+| .+++| .|+.+||+.+++. .|...+++++..+++.+|.|++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 57889999998 79999 5999999999999 8888899999999999999999999999999998764
No 24
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.39 E-value=2.2e-11 Score=87.56 Aligned_cols=138 Identities=25% Similarity=0.391 Sum_probs=106.7
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccch---------hh
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALLRS-LGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMD---------ET 79 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~---------~~ 79 (160)
..+.+.|..+|....|.|+......+... .+.+++ ....--+....+.+|.|.|......+..-.. ..
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP--Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLP--WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCc--HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 45788899999999999999999988864 345554 1122233445677899999988776632221 12
Q ss_pred HhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 80 ILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM----GQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 80 ~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
.......++.+|+.+|.|.+|.|+.+||++++.-+ ....+++++.++.+.+|.|++|.|+++||++.+.-
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 22334567789999999999999999999999764 45688999999999999999999999999998763
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=4.6e-12 Score=73.50 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFARFD-MDSDG-SLTILELAALLRS-----LGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+.-+..+.++|..+| ++++| .|+.++|+.+++. ++...++.++..+++.+|.+++|+|+|++|+..+.
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 456788999999998 79999 5999999999998 88889999999999999999999999999998874
No 26
>PTZ00183 centrin; Provisional
Probab=99.36 E-value=2.3e-11 Score=78.39 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHH
Q 042615 46 DQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM-GQPLTYKELT 124 (160)
Q Consensus 46 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~-~~~~~~~~~~ 124 (160)
..+..+|..+|.+++|.|++.+|..++...-. ......+..+|..+|.+++|.|+.++|..++... ........+.
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~---~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGF---EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 34677789999999999999999888753311 1223578899999999999999999999887663 3445677899
Q ss_pred HHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 125 EMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 125 ~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
.+|+.+|.+++|.|+.+||..++...
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 99999999999999999999998753
No 27
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.35 E-value=6.8e-12 Score=74.32 Aligned_cols=75 Identities=27% Similarity=0.407 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCCcccCCCC
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLDFFGLGLS 160 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 160 (160)
...+..+|..+|.+++|.|+.++++.+++..| ++.+++..++..++.+++|.|++++|+.++........|..+|
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~ 83 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIP 83 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCC
Confidence 36889999999999999999999999999976 6789999999999999999999999999998876665555544
No 28
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.35 E-value=2.9e-11 Score=76.86 Aligned_cols=98 Identities=14% Similarity=0.317 Sum_probs=83.5
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHH
Q 042615 12 LRDIFARFDMDSDGSLTILELAALLRSL-GLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEI 90 (160)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 90 (160)
+.+++..+|. +++.|+..+|..++... ....+.+++...|+.+|.+++|+|+..++..++... ......+.+..+
T Consensus 58 i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l---ge~~~deev~~l 133 (160)
T COG5126 58 INKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL---GERLSDEEVEKL 133 (160)
T ss_pred HHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh---cccCCHHHHHHH
Confidence 4667888888 89999999999999754 467789999999999999999999999999998633 222345789999
Q ss_pred HHHhcCCCCCcccHHHHHHHHHh
Q 042615 91 FRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 91 f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
++.+|++++|.|+.++|.+.+..
T Consensus 134 l~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 134 LKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999998764
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.34 E-value=1.4e-11 Score=72.94 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
.+++.++..++.+|..+|.+++|.|+.++++.+++..+ ++..++..+++.+|.+++|.|+|++|+..+.
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 47889999999999999999999999999999998865 6888999999999999999999999998873
No 30
>PTZ00184 calmodulin; Provisional
Probab=99.30 E-value=6.6e-11 Score=75.40 Aligned_cols=101 Identities=26% Similarity=0.362 Sum_probs=82.3
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHH
Q 042615 47 QIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM-GQPLTYKELTE 125 (160)
Q Consensus 47 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~-~~~~~~~~~~~ 125 (160)
.+...|..+|.+++|.|++.+|..++...-. ....+.+..+|+.+|.+++|.|+.++|..++... ........+..
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQ---NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 4567788899999999999999987743211 1223678999999999999999999999998764 33345677889
Q ss_pred HHHhhccCCCcceeHHHHHHHHhhc
Q 042615 126 MIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 126 ~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
+|+.+|.+++|.|+.++|..++...
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 9999999999999999999998753
No 31
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.30 E-value=9.4e-11 Score=94.35 Aligned_cols=138 Identities=25% Similarity=0.467 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHhhcCCCCCceeHHHHHHHhcc
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKP-------SGDQIHVLLANMDANGNGAVEFDELVNAILP 74 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (160)
++.+++++.++.-+|..||.+.+|++++.+|..+|+.+|+.+ ++..++.++..+|++.+|+|+..+|+.++..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 578999999999999999999999999999999999999875 2347999999999999999999999999865
Q ss_pred cchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh----cc----CCCcceeHHHHHHH
Q 042615 75 DMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA----DT----NGDGVISFNEFAAV 146 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~----d~----~~~g~i~~~ef~~~ 146 (160)
.-+.... ....+..+|+.+|. +.-+|+.+++... ++.++..-++..+ ++ ...+.++|.+|++.
T Consensus 2325 ~ETeNI~-s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~s 2395 (2399)
T KOG0040|consen 2325 KETENIL-SSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNS 2395 (2399)
T ss_pred ccccccc-chHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHH
Confidence 4433333 23589999999998 7789999988654 4555554444443 33 23457999999887
Q ss_pred Hh
Q 042615 147 MA 148 (160)
Q Consensus 147 l~ 148 (160)
+-
T Consensus 2396 l~ 2397 (2399)
T KOG0040|consen 2396 LF 2397 (2399)
T ss_pred Hh
Confidence 63
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.29 E-value=2.3e-11 Score=71.70 Aligned_cols=67 Identities=27% Similarity=0.482 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 85 EQLLEIFRAFDR-DG-NGYITAAELAGSMAK-----MGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 85 ~~~~~~f~~~D~-~~-~G~i~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
..+..+|..+|. ++ +|.|+.+|++.++.. +|..++..++..+++.+|.+++|.|+|++|+.++...+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 678899999997 87 699999999999986 46678899999999999999999999999999887653
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.28 E-value=3.9e-11 Score=69.64 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhcC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFARFDM-DS-DGSLTILELAALLR---SLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+..+..+..+|+.++. ++ +|.|+.+||+.++. .+|.+++.+++..+++.+|.+++|+|+|++|+..+.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 5667889999999998 66 89999999999996 368889999999999999999999999999998873
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.28 E-value=4.1e-11 Score=69.51 Aligned_cols=66 Identities=21% Similarity=0.479 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcC-CC-CCcccHHHHHHHHH---hcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRAFDR-DG-NGYITAAELAGSMA---KMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~~D~-~~-~G~i~~~e~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..+..+|..+|. ++ +|.|+.+||+.++. ..|..++++++.++++.+|.+++|.|+|+||+.++...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 567889999998 67 89999999999996 36888999999999999999999999999999998764
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.27 E-value=6e-11 Score=69.70 Aligned_cols=66 Identities=27% Similarity=0.554 Sum_probs=58.5
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-cC----CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRAFD-RDGNG-YITAAELAGSMAK-MG----QPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~~D-~~~~G-~i~~~e~~~~~~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
+.+.++|..+| .+++| .|+..||+.+++. +| ...+..++..++..+|.+++|.|+|++|+.++...
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 67899999997 99999 5999999999986 44 34588999999999999999999999999988764
No 36
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.27 E-value=3.5e-11 Score=63.60 Aligned_cols=52 Identities=38% Similarity=0.700 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 98 GNGYITAAELAGSMAKMGQP-LTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 98 ~~G~i~~~e~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
.+|.|+.++|+.++..+|.. +++.++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999999864
No 37
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.25 E-value=8.6e-11 Score=84.86 Aligned_cols=133 Identities=19% Similarity=0.294 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh----cCCCCCceeHHHHHHHhcccchhhHhh
Q 042615 7 DQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANM----DANGNGAVEFDELVNAILPDMDETILI 82 (160)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~g~i~~~ef~~~~~~~~~~~~~~ 82 (160)
+....+...|..+|++++|.|+.+++.+.- ...++.-.+.++|+.. -...+|+++|++|+.++...... .
T Consensus 275 e~f~viy~kFweLD~Dhd~lidk~~L~ry~---d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k---~ 348 (493)
T KOG2562|consen 275 EHFYVIYCKFWELDTDHDGLIDKEDLKRYG---DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK---D 348 (493)
T ss_pred HHHHHHHHHHhhhccccccccCHHHHHHHh---ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC---C
Confidence 344556677999999999999999998874 3346678899999833 34568999999999987544322 2
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-------CC--CCCHHHHHHHHHhhccCCCcceeHHHHHH
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKM-------GQ--PLTYKELTEMIKEADTNGDGVISFNEFAA 145 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~-------~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 145 (160)
....++-.|+.+|.+++|.++..|++.+.... +. ..-++.+++++..+.+...++|++.+|..
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 34688999999999999999999998877553 22 12367789999999999999999999987
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=8.2e-11 Score=69.12 Aligned_cols=66 Identities=21% Similarity=0.465 Sum_probs=57.4
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRAFD-RDGNG-YITAAELAGSMAKM-----GQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~~D-~~~~G-~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..+.++|..|| .+++| .|+.+||+.++... +...++.++.++++.+|.+++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 57888999999 78998 59999999999762 334578899999999999999999999999998764
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=1e-10 Score=68.67 Aligned_cols=68 Identities=26% Similarity=0.511 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhc-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFARFD-MDSDG-SLTILELAALLRS-LG----LKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+.-+..++++|..+| .+++| .|+.++++.+++. ++ ..++..++..+++.+|.+++|.|+|++|+..+.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 445678999999997 99999 5999999999975 43 356889999999999999999999999998874
No 40
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.24 E-value=5.9e-11 Score=65.50 Aligned_cols=61 Identities=36% Similarity=0.512 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 88 LEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 88 ~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
+.+|..+|++++|.|+.+|++.++...| .+.+++..++..++.+++|.|++++|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999999999999999987 478899999999999999999999999988653
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=1.1e-10 Score=68.90 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 7 DQLNQLRDIFARFDM-DS-DGSLTILELAALLRS-----LGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 7 ~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
.-+..+..+|..+|. ++ +|.|+.++++.++.. ++..++..++..++..+|.+++|.|+|++|+..+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346778999999997 87 699999999999975 46678999999999999999999999999998773
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.23 E-value=8.9e-11 Score=68.42 Aligned_cols=68 Identities=22% Similarity=0.413 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhcC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFARFDM--DSDGSLTILELAALLRS-LGLK----PSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
++++..++.+|..+|+ +++|.|+..+|..++.. ++.. .+..++..++..+|.+++|.|+|++|+..+.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 5678889999999999 89999999999999975 4433 4589999999999999999999999999874
No 43
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.23 E-value=2.8e-10 Score=74.69 Aligned_cols=102 Identities=25% Similarity=0.360 Sum_probs=84.3
Q ss_pred HHHHhhhcCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCCCCCceeHHHHHHHhcccchhh----HhhhHHH
Q 042615 13 RDIFARFDMDSDGS-LTILELAALLRSLGLKPSGD-QIHVLLANMDANGNGAVEFDELVNAILPDMDET----ILINQEQ 86 (160)
Q Consensus 13 ~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~----~~~~~~~ 86 (160)
.+++..++.+++|. |+.++|.+.+.....+.... .+.-.|+.||.+++|.|+.+++...+...+... .......
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 56788888888888 99999999998876665555 788999999999999999999999887665432 1222355
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~ 114 (160)
+..+|..+|.++||.|+.+|+..++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 6778999999999999999999998764
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.22 E-value=1.5e-10 Score=68.07 Aligned_cols=68 Identities=24% Similarity=0.413 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhhc-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFARFD-MDSDG-SLTILELAALLRS-L----GLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+.-+..+.++|+.+| .+++| .|+.+||+.++.. + ....+..++..+++.+|.+++|.|+|++|+..+.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 455778899999999 67998 5999999999975 2 3345788999999999999999999999999874
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=99.21 E-value=4.5e-10 Score=85.89 Aligned_cols=122 Identities=19% Similarity=0.305 Sum_probs=90.3
Q ss_pred cccHHHHHHHHHH--cC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcc
Q 042615 26 SLTILELAALLRS--LG-LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYI 102 (160)
Q Consensus 26 ~i~~~e~~~~l~~--~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i 102 (160)
.++.+++...... .. .....+++...|..+|++++|.+ ....+..+... .........+..+|..+|.+++|.|
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~--~pte~e~~fi~~mf~~~D~DgdG~I 196 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIE--DPVETERSFARRILAIVDYDEDGQL 196 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCC--CCCHHHHHHHHHHHHHhCCCCCCeE
Confidence 4677776654321 01 11223557778999999999987 44444444210 1111111348899999999999999
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 103 TAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 103 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
+.+||..++..++...+++++..+|+.+|.|++|.|+++||...+...
T Consensus 197 dfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 197 SFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999998877889999999999999999999999999999884
No 46
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.20 E-value=1.4e-10 Score=67.59 Aligned_cols=68 Identities=19% Similarity=0.422 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcC--CCCCcccHHHHHHHHHh-cCCC----CCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 84 QEQLLEIFRAFDR--DGNGYITAAELAGSMAK-MGQP----LTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 84 ~~~~~~~f~~~D~--~~~G~i~~~e~~~~~~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.+.+..+|..+|. +++|.|+.++|..+++. .|.+ .+..++..++..++.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3678889999999 89999999999999986 4543 3589999999999999999999999999988653
No 47
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.19 E-value=1.4e-10 Score=61.28 Aligned_cols=51 Identities=31% Similarity=0.613 Sum_probs=47.6
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 23 SDGSLTILELAALLRSLGLK-PSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
++|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+|+||+..+.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888999 9999999999999999999999999998873
No 48
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.18 E-value=2.9e-10 Score=61.36 Aligned_cols=61 Identities=48% Similarity=0.852 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVM 147 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 147 (160)
+..+|..+|.+++|.|+.+++..++...+.+.+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999876
No 49
>PF14658 EF-hand_9: EF-hand domain
Probab=99.17 E-value=2.1e-10 Score=61.76 Aligned_cols=61 Identities=28% Similarity=0.522 Sum_probs=57.5
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhhccCCC-cceeHHHHHHHHhh
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAKMGQ-PLTYKELTEMIKEADTNGD-GVISFNEFAAVMAK 149 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 149 (160)
.+|..||.++.|.|...++..+|++.+. ...+.+++.+.+.+|+++. |.|+++.|+..+++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3799999999999999999999999988 8899999999999999998 99999999999875
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.16 E-value=2.2e-10 Score=63.21 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=53.3
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 13 RDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
+.+|..+|++++|.|+.+++..++...+. +.+++..++..++.+++|.|+|++|+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 56899999999999999999999988764 88899999999999999999999998876
No 51
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=9.9e-10 Score=68.86 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=86.9
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHH
Q 042615 46 DQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAK-MGQPLTYKELT 124 (160)
Q Consensus 46 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~-~~~~~~~~~~~ 124 (160)
.++...|..++++++|+|+++++...+...-.. ...+.+..+..-+|+++.|.|+.++|+.++.. ++..-+.+++.
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE---~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFE---PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC---cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 457888999999999999999995555332222 23367888999999999999999999999866 66666999999
Q ss_pred HHHHhhccCCCcceeHHHHHHHHhhcCC
Q 042615 125 EMIKEADTNGDGVISFNEFAAVMAKSTL 152 (160)
Q Consensus 125 ~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 152 (160)
..|+.+|.+++|.|++.+|+....+...
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 9999999999999999999998887654
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.14 E-value=4.9e-10 Score=60.44 Aligned_cols=61 Identities=36% Similarity=0.692 Sum_probs=56.9
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 12 LRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
+..+|..+|.+++|.|+.+++..++..++...+.+.+..++..++.+++|.|++++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999998764
No 53
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.11 E-value=6.9e-10 Score=67.46 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
...+..+|..+|.|++|.|+.+|+..+. ....+..+..+++.+|.|++|.||++||+.++.+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 3678889999999999999999999876 2345778899999999999999999999999943
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=9.9e-10 Score=63.84 Aligned_cols=66 Identities=26% Similarity=0.444 Sum_probs=57.5
Q ss_pred HHHHHHHHH-hcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRA-FDRDGNG-YITAAELAGSMAKM-----GQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~-~D~~~~G-~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..+..+|.. +|.+++| .|+.+||+.++... +...++.++..+++.+|.|++|.|+|+||+.++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 578889999 7788876 99999999999885 334567899999999999999999999999988764
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=1.3e-09 Score=63.41 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhh-hcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFAR-FDMDSDG-SLTILELAALLRSL-----GLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+..+..|..+|+. +|.+++| .|+.+||+.++..- +......++..+++.+|.+++|.|+|++|+..+.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4567889999999 7777876 99999999999764 3355678999999999999999999999998874
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=99.09 E-value=6.2e-10 Score=59.98 Aligned_cols=61 Identities=25% Similarity=0.540 Sum_probs=56.9
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCCC-CceeHHHHHHHhcc
Q 042615 14 DIFARFDMDSDGSLTILELAALLRSLGL-KPSGDQIHVLLANMDANGN-GAVEFDELVNAILP 74 (160)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 74 (160)
..|..||+++.|.|...++..+|+.++. .+++++++.+.+.+|+++. |.|+++.|+..+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999988 8999999999999999988 99999999998854
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=2.7e-09 Score=64.85 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 042615 43 PSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMA 112 (160)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~ 112 (160)
.-...+...|..+|.+++|.|+.+|+..+.. ......+..+|..+|.+++|.||.+|+..++.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l-------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRL-------DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHc-------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3344556666666666666666666655431 01123455566666666666666666666653
No 58
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.99 E-value=8.1e-09 Score=74.43 Aligned_cols=131 Identities=20% Similarity=0.305 Sum_probs=98.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHcC-CCC--CHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHH
Q 042615 12 LRDIFARFDMDSDGSLTILELAALLRSLG-LKP--SGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLL 88 (160)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (160)
+..-|..+|+..+|.|+..+|...+.... .+. ......++-+.++.+ +..|+++||..+.. -......+.
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~------Fl~~l~dfd 392 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR------FLNNLNDFD 392 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH------HHhhhhHHH
Confidence 45568889998889999999988776433 222 233567777777665 45699999888762 222224555
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAK-MGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
.+...+ ....+.|+..+|+++... .|.++++..++.+|..+|.|+||.++.+||+..+.+-
T Consensus 393 ~Al~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 393 IALRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 555555 234478999999988876 6889998899999999999999999999999999864
No 59
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.98 E-value=4.1e-09 Score=62.80 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 1 MGGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 1 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
|+++++++...+..+|..+++ ++|.|+.++...++...+ ++.+.+..||...|.+++|.++++||+.++
T Consensus 1 ~~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 1 MPKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp ----SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 789999999999999999985 589999999999998764 777899999999999999999999999876
No 60
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.97 E-value=5.9e-09 Score=69.99 Aligned_cols=141 Identities=20% Similarity=0.331 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhH----
Q 042615 8 QLNQLRDIFARFDMDSDGSLTILELAALLRSLG---LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETI---- 80 (160)
Q Consensus 8 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~---- 80 (160)
-.+.++.+|...|.|.+|+|+..++++.+.... ..-+.++.+.-|+..|++++|.|+|++|...+........
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 346789999999999999999999999876421 2233445566789999999999999999765521110000
Q ss_pred -----------------------------------------------------hhhHHHHHHHHHHhcCCCCCcccHHHH
Q 042615 81 -----------------------------------------------------LINQEQLLEIFRAFDRDGNGYITAAEL 107 (160)
Q Consensus 81 -----------------------------------------------------~~~~~~~~~~f~~~D~~~~G~i~~~e~ 107 (160)
..-...+..+.+.+|++++..++..||
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 000011445678888888888888888
Q ss_pred HHHHHh-----cCCCCC----HHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 108 AGSMAK-----MGQPLT----YKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 108 ~~~~~~-----~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
....-. .|..+. ++..+++-+.+|.|.+|.++++|+.+++.
T Consensus 259 islpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 259 ISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 755421 122222 23345567777888999999998888854
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.96 E-value=5.1e-09 Score=60.86 Aligned_cols=68 Identities=16% Similarity=0.372 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhhcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFARFDMD--SDGSLTILELAALLR-SLGLKPS----GDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+.-+..+..+|+.++.. .+|.|+.++|+.++. .++..++ +.++..++..+|.+++|.|+|++|+..+.
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 45577889999999976 479999999999996 4555565 89999999999999999999999998874
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.93 E-value=7.6e-09 Score=60.13 Aligned_cols=66 Identities=23% Similarity=0.434 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRAFDRD--GNGYITAAELAGSMA-KMGQPLT----YKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~~D~~--~~G~i~~~e~~~~~~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..+...|..++.. .+|.|+.+||+.++. ..|..++ +.++..++..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5677889999865 478999999999997 4565555 8999999999999999999999999998765
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.86 E-value=5.3e-08 Score=69.91 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHH
Q 042615 45 GDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELT 124 (160)
Q Consensus 45 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~ 124 (160)
+..+..+|+.+|.+++|.+++.+....+...-.+ ....+.+..+|+..|.+.+|.|+.+||++.+.. .+.++.
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~--~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~ 85 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP--KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELY 85 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC--CCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHH
Confidence 4458889999999999999999998766544333 233467888999999999999999999999985 677889
Q ss_pred HHHHhhccCCCcceeHHHHHHHHhhcCCC
Q 042615 125 EMIKEADTNGDGVISFNEFAAVMAKSTLD 153 (160)
Q Consensus 125 ~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 153 (160)
.+|+.+|.+.+|.|+.+|...++.+.-..
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~ 114 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQ 114 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCc
Confidence 99999999999999999999999876443
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.83 E-value=3.1e-08 Score=64.51 Aligned_cols=106 Identities=20% Similarity=0.347 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhh
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILI 82 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 82 (160)
.++..+|.....+|..+|.+.||+|+..|++..+..+|.+.|---+..++...|.|.+|+++|.+|+-.+...... ...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag-EL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG-ELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc-ccc
Confidence 4678899999999999999999999999999999999999998889999999999999999999998877433221 111
Q ss_pred hHHHHHHHHHH--hcCCCCCcccHHHHHH
Q 042615 83 NQEQLLEIFRA--FDRDGNGYITAAELAG 109 (160)
Q Consensus 83 ~~~~~~~~f~~--~D~~~~G~i~~~e~~~ 109 (160)
....+..+=+. .|..+.|.-....|-.
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 11233333333 5767777666655533
No 65
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.81 E-value=5.8e-08 Score=60.66 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=55.8
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
.|..+|..||.+++|.|..+.++++|...|-+.+++++..+++.+..+..|.++|..|+..+.
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 378889999999999999999999998888899999999999999888889999999988774
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.74 E-value=3.7e-07 Score=67.19 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=87.9
Q ss_pred HHHHHHHHH---hhhcCCCCCcccHHHHHHHHHH-cCC-CCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhh
Q 042615 8 QLNQLRDIF---ARFDMDSDGSLTILELAALLRS-LGL-KPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILI 82 (160)
Q Consensus 8 ~~~~l~~~f---~~~d~~~~g~i~~~e~~~~l~~-~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 82 (160)
+..+++.+| ...+.++...++.++|.+.... .+. ...+..+..+-+..|..+||-|+|+||+.+-.-.+.+
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p---- 106 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP---- 106 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc----
Confidence 344455555 4456678889999999775433 333 3556666667777888999999999998764332222
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC------CCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQP------LTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~------~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
......+|+.||..++|.++.+++.+++...... ++.+-+.. .+..+....++|.+|..++.+
T Consensus 107 -Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 107 -DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHE 175 (694)
T ss_pred -hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHH
Confidence 2456779999999999999999999999875321 22222221 333334455566666555544
No 67
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.73 E-value=3.3e-07 Score=66.36 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=91.3
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHH------cCC----------CCCHH-HHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLRS------LGL----------KPSGD-QIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~------~~~----------~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
.+.-.|..+|.|+||.|+.+||..+.+- ++. ..... .-.....-+..++++++++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 3456789999999999999999886531 121 00101 111244557889999999999999873
Q ss_pred ccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-CCC--HHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 74 PDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ-PLT--YKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~-~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
.. +.+.++.-|..+|+..+|.|+..+|..++..+.. +.. ...+..+-+.++.+ .-.|+++||..+..
T Consensus 314 ~L-------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 NL-------QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HH-------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 21 2245556799999999999999999999988643 222 22356677777655 45699999888764
No 68
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.72 E-value=1.3e-07 Score=61.71 Aligned_cols=68 Identities=37% Similarity=0.609 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.+.+...|..+|.+.||+|+..|++.++..+|.+.+.--+..+++..|.|.+|+|++-+|.-++.+..
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 36788899999999999999999999999999998888899999999999999999999999988753
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.64 E-value=1.6e-07 Score=57.74 Aligned_cols=63 Identities=25% Similarity=0.492 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 9 LNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
.+.+.+.++.+|++++|+|...+++++|..+|-.++++++..++.-. .|++|.|+|+.|+..+
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 35567778889999999999999999999999999999999988655 6778999999998765
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=7.9e-07 Score=51.38 Aligned_cols=67 Identities=15% Similarity=0.282 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 6 IDQLNQLRDIFARFDMDSDGSLTILELAALLRS-L----GLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+.-+..+..+|+.+..+ .+.++..||+.++.. + ...-....+..+++.+|.++||.|+|.||+..+.
T Consensus 4 E~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 4 EHSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34567789999999854 679999999999863 2 3344678899999999999999999999999874
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.61 E-value=8.4e-08 Score=43.58 Aligned_cols=25 Identities=44% Similarity=0.712 Sum_probs=11.5
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHH
Q 042615 88 LEIFRAFDRDGNGYITAAELAGSMA 112 (160)
Q Consensus 88 ~~~f~~~D~~~~G~i~~~e~~~~~~ 112 (160)
..+|+.+|+|++|.|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 3444444444444444444444443
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.1e-06 Score=67.82 Aligned_cols=150 Identities=19% Similarity=0.300 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc----------
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL---------- 73 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~---------- 73 (160)
++..+...-...|..+ ..+.|+|+-.+-+.++...+ +....+..||...|.|+||+++..||..++.
T Consensus 10 vT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 5667777777788888 56689999999999887766 4455788999999999999999999988760
Q ss_pred --------------------------------------------------------------------c--------cch
Q 042615 74 --------------------------------------------------------------------P--------DMD 77 (160)
Q Consensus 74 --------------------------------------------------------------------~--------~~~ 77 (160)
. .+.
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 0 000
Q ss_pred h-h-----H--------h-------hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCc
Q 042615 78 E-T-----I--------L-------INQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDG 136 (160)
Q Consensus 78 ~-~-----~--------~-------~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g 136 (160)
. + . . ...-.+..+|..+|+...|.+|-..-+.+|...+ ++...+..++...|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 0 0 0 0 0112377899999999999999999999999887 5668899999999999999
Q ss_pred ceeHHHHHHHHhhcCCCcccCC
Q 042615 137 VISFNEFAAVMAKSTLDFFGLG 158 (160)
Q Consensus 137 ~i~~~ef~~~l~~~~~~~~~~~ 158 (160)
+++-+||+-.+.=...-..|.+
T Consensus 245 kL~~dEfilam~liema~sGq~ 266 (1118)
T KOG1029|consen 245 KLSADEFILAMHLIEMAKSGQP 266 (1118)
T ss_pred cccHHHHHHHHHHHHHHhcCCC
Confidence 9999999876654433333333
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.53 E-value=4.1e-06 Score=64.67 Aligned_cols=144 Identities=19% Similarity=0.330 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhH
Q 042615 5 HIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQ 84 (160)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 84 (160)
......-+..+|...|.+.+|.++..+...++..++..+....+.++++..+..+++++...+|..+.... ...
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~------~~r 204 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL------TKR 204 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh------ccC
Confidence 44555668899999999999999999999999999999999999999999988899999999998876322 222
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHhhccCC----CcceeHHHHHHHHhhcCCCcc
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ--PLTYKELTEMIKEADTNG----DGVISFNEFAAVMAKSTLDFF 155 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~~~~~~~~ 155 (160)
..+..+|..+. ++.+.++.+++..++...+. ..+.+.+.++++.+.... .+.++++.|..||-......+
T Consensus 205 pev~~~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~f 280 (746)
T KOG0169|consen 205 PEVYFLFVQYS-HGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNPF 280 (746)
T ss_pred chHHHHHHHHh-CCCCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCCC
Confidence 47888888885 44899999999999988642 577888888998885543 456999999999987655443
No 74
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.53 E-value=3.9e-07 Score=67.06 Aligned_cols=126 Identities=17% Similarity=0.263 Sum_probs=81.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHH
Q 042615 12 LRDIFARFDMDSDGSLTILELAALLRSLGLK---PSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLL 88 (160)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (160)
...+|..+|+.++|.++++++..++...... +-.++.+-+-..+.......++|.+|.+.+... ..+...
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~-------~~E~~~ 182 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEF-------QLEHAE 182 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHH-------HHHHHH
Confidence 3456777777777777777777776654321 222222233333444455567777777776432 124578
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCC-cceeHHHHH
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGD-GVISFNEFA 144 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~ 144 (160)
++|+..|+.++|.||.-++...+-....++....+...+-......+ .++++..|.
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 89999999999999999999999887766666777776655544443 356655443
No 75
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.52 E-value=2.6e-07 Score=41.96 Aligned_cols=28 Identities=50% Similarity=0.834 Sum_probs=25.9
Q ss_pred HHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 122 ELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 122 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
++..+|+.+|.|++|.|+++||...+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999875
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.49 E-value=2.8e-07 Score=42.63 Aligned_cols=29 Identities=41% Similarity=0.831 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH-hcC
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMA-KMG 115 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~-~~~ 115 (160)
+..+|+.+|.+++|.|+.+||+.+++ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56788888888888888888888887 454
No 77
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.48 E-value=2.7e-06 Score=49.21 Aligned_cols=65 Identities=22% Similarity=0.399 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc-----CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKM-----GQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..+..+|..+. ...+.++..||+.++..- +..-++..++.+++.+|.|++|.|+|.||+.++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 56777888886 456799999999999662 334568889999999999999999999999988754
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.44 E-value=2.3e-06 Score=51.04 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
...+..+|...++ ++|.|+.++.+.++...+ ++.+.+..++...|.+++|.++.+||+-.+.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4678889999985 689999999999999988 6789999999999999999999999987654
No 79
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.40 E-value=3.2e-06 Score=61.82 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=99.4
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHH--HHHcCC------------CCCHHHHHHH---HHhhcCCCCCceeHHHHHHHhc
Q 042615 11 QLRDIFARFDMDSDGSLTILELAAL--LRSLGL------------KPSGDQIHVL---LANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~--l~~~~~------------~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
.+.++|..+++.++|.|+..++++. +..+.. -.+-+....+ +..+|++++|.|+-++....-.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 3678899999999999999988663 222111 1122223333 6677999999999888877653
Q ss_pred ccchhhHhhhHHHHHHHHH----HhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 74 PDMDETILINQEQLLEIFR----AFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~f~----~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
+.. ....+.++|. .+-...+|.++.++|..++.+....-++..+...|+.+|.+++|.|+..|..-++..
T Consensus 306 ~tl------t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 306 HTL------TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred cch------hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 332 2356778888 344556899999999999999887778889999999999999999999988777664
No 80
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.40 E-value=5.3e-07 Score=63.04 Aligned_cols=122 Identities=16% Similarity=0.224 Sum_probs=93.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCc
Q 042615 22 DSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGY 101 (160)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 101 (160)
.+.+.|...+|...++ ++.+ ..+..+|..+|.+++|.++|.+....+.-...... ....+.-+|+.|+.+-||.
T Consensus 239 ~kg~~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~--t~~iiq~afk~f~v~eDg~ 312 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPV--TPVIIQYAFKRFSVAEDGI 312 (412)
T ss_pred ccCCCcceeEeeeeee---cchh-hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCC--cHHHHHHHHHhcccccccc
Confidence 3455566655544332 2233 45677888999999999999999888766554433 3478888999999999999
Q ss_pred ccHHHHHHHHHh-cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 102 ITAAELAGSMAK-MGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 102 i~~~e~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
++..+|..+|+. +| +.+-.+-.+|...+...+|+|++.+|.++....+
T Consensus 313 ~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 313 SGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 999999988877 34 4445566789999999999999999999988765
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.38 E-value=2.3e-06 Score=43.61 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 26 SLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
+++..|++.+|+.+++.+.+..+..+|..+|.+++|.++-+||..++
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 47889999999999999999999999999999999999999998876
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.37 E-value=7.6e-07 Score=41.16 Aligned_cols=30 Identities=53% Similarity=0.840 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHH-HcC
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLR-SLG 40 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 40 (160)
+++.+|..+|.+++|.|+.+||..++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468889999999999999999999988 454
No 83
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.36 E-value=3.9e-06 Score=52.21 Aligned_cols=101 Identities=16% Similarity=0.264 Sum_probs=75.4
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhH--hhhHHHHHHH
Q 042615 14 DIFARFDMDSDGSLTILELAALLRSLG-LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETI--LINQEQLLEI 90 (160)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~--~~~~~~~~~~ 90 (160)
++...+..+|.|.++.++|...+.-+. ..+.+-.+...|+.||-++++.|.-++....+........ ..-.-.+.++
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 455667789999999999999887543 2344555677889999999999999888877654332211 1112346678
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhc
Q 042615 91 FRAFDRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 91 f~~~D~~~~G~i~~~e~~~~~~~~ 114 (160)
....|.+++|+++..||.+++.+.
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 888999999999999999998764
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.29 E-value=5.7e-06 Score=42.21 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
+++..|++.+++.+.+.+++..+..+|+..|.+++|.+.-+||..++...
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999998753
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.25 E-value=1.8e-06 Score=37.78 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=13.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHH
Q 042615 88 LEIFRAFDRDGNGYITAAELAGS 110 (160)
Q Consensus 88 ~~~f~~~D~~~~G~i~~~e~~~~ 110 (160)
..+|+.+|.|++|.|+.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666553
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.21 E-value=5.3e-06 Score=60.76 Aligned_cols=53 Identities=36% Similarity=0.554 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+...
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4577899999999999999999842 4779999999999999999999988753
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.20 E-value=8.1e-06 Score=59.59 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHhcccchhh-HhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 042615 48 IHVLLANMDANGNGAVEFDELVNAILPDMDET-ILINQEQLLEIFRAFDRDGNGYITAAELAGSMA 112 (160)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~ 112 (160)
++.+|+..|.+.+|.|+.+||..++.-..... .....+.+..+-+.+|-++||.|+..||..+++
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 34444455555555555555544432211111 011223444444555555555555555544443
No 88
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.15 E-value=1.6e-05 Score=58.33 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=51.2
Q ss_pred cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 39 LGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 39 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
.+.......+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||..++..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34556677889999999999999999999942 456899999999999999999998875
No 89
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.15 E-value=1.4e-05 Score=59.47 Aligned_cols=71 Identities=28% Similarity=0.551 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLK---PSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+.++.+++..+++.|...| +++|+++..++..++...+.. ...++++.++...+++.+|+|+|++|+..+.
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 5689999999999999999 999999999999999876544 4588899999999999999999999999764
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.07 E-value=6.5e-06 Score=35.95 Aligned_cols=24 Identities=42% Similarity=0.803 Sum_probs=15.2
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHH
Q 042615 12 LRDIFARFDMDSDGSLTILELAAL 35 (160)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~ 35 (160)
|++.|..+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 345666666666666666666654
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.98 E-value=3.7e-06 Score=51.07 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 042615 40 GLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAG 109 (160)
Q Consensus 40 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~ 109 (160)
....-...+...|..+|.++||.++-.|+..+........ ..+..+++..|.++||.||..|...
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e-----~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPE-----HCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTG-----GGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhH-----HHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4445566777788888888888888887766554332111 3566678888888888888877643
No 92
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.91 E-value=4.3e-05 Score=51.84 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 042615 45 GDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 45 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~ 114 (160)
...+..+|++.|.+.+|+|+-.+....+......+.....+.-.-.|+..|++++|.|+++|++--+.+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 4457889999999999999999998888665555444434455567999999999999999998766554
No 93
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.90 E-value=9.9e-05 Score=42.29 Aligned_cols=68 Identities=21% Similarity=0.405 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcC-C-CCCHHHHHHHHHhhccC----CCcceeHHHHHHHHhhcCCCc
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMG-Q-PLTYKELTEMIKEADTN----GDGVISFNEFAAVMAKSTLDF 154 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~~~~~ 154 (160)
++..+|..+.. +.+.||.++|+.+|.... . ..+.+.+..+++.+..+ ..+.+++++|..+|......+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~ 74 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSI 74 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCC
Confidence 36778999954 788999999999997743 3 46899999999998665 478999999999998765443
No 94
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.89 E-value=5.9e-05 Score=62.50 Aligned_cols=67 Identities=24% Similarity=0.510 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCC-------CHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPL-------TYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
..+..+|..||++++|.++..+|+.+++..|+.+ ++.++.+++...|++.+|+|+..+|+.|+..+.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 3566789999999999999999999999998864 234789999999999999999999999998764
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.74 E-value=3e-05 Score=47.14 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHH
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAV 146 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 146 (160)
...+.-.|..+|.+++|.++..|+..+...+ ...+.-+..++..-|.|++|.|++.|+..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3567778999999999999999998776544 245566888999999999999999999864
No 96
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.60 E-value=0.00097 Score=50.82 Aligned_cols=140 Identities=20% Similarity=0.269 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHH-HHcCCCCCHHHHHHHHHhhcCCC-----CCceeHHHHHHHhcccc
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALL-RSLGLKPSGDQIHVLLANMDANG-----NGAVEFDELVNAILPDM 76 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~~~~~~d~~~-----~g~i~~~ef~~~~~~~~ 76 (160)
.+.+.-+..+.++|...|.|.+|.++-+|+-.+= .+++.++...+++.+-...+... +..++..-|+-.-..++
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfi 267 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFI 267 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHH
Confidence 3567778899999999999999999999987753 35777887777666655543321 12233333332210000
Q ss_pred ----------------------------h-----------hhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC
Q 042615 77 ----------------------------D-----------ETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQP 117 (160)
Q Consensus 77 ----------------------------~-----------~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~ 117 (160)
. .....-.+.+..+|..+|.++||.++.+|+..++...+..
T Consensus 268 ergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 268 ERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred HhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 0 0000112457778999999999999999999999887653
Q ss_pred C----CHHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 118 L----TYKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 118 ~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
. ...+.. -.+..|.++|+.|+..+.
T Consensus 348 pW~~~~~~~~t------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 348 PWTSSPYKDST------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCcccccc------eecccceeehhhHHHHHH
Confidence 2 111111 123678899998887665
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.46 E-value=0.00069 Score=50.82 Aligned_cols=64 Identities=31% Similarity=0.612 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKMGQP---LTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
..+...|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|.|++++|+..+..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 56778899998 999999999999999887654 35889999999999999999999999995544
No 98
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.40 E-value=0.0028 Score=40.99 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=87.7
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcC---CCCCceeHHHHHHHhcccch--------
Q 042615 9 LNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDA---NGNGAVEFDELVNAILPDMD-------- 77 (160)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~~-------- 77 (160)
...|++-..-+|+|+||.|.+-|-...++.+|..+.-..+..++-.... ...+.+.- .+..+....+.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~-P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPD-PFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCC-CceeEEeecccccccCCCc
Confidence 3456777888999999999999999999999987654443333222110 11111110 01111100000
Q ss_pred ----hhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-------CCCHHHHHHHHHhhccCCCcceeHHHHHHH
Q 042615 78 ----ETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ-------PLTYKELTEMIKEADTNGDGVISFNEFAAV 146 (160)
Q Consensus 78 ----~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 146 (160)
...--..++++++|..++..+.+.+|..|+..+++.-.. ..+.-|+..++..+ .+++|.+..++...+
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 001113589999999999999999999999999987422 23455666666655 677899999887766
Q ss_pred Hh
Q 042615 147 MA 148 (160)
Q Consensus 147 l~ 148 (160)
+.
T Consensus 164 YD 165 (174)
T PF05042_consen 164 YD 165 (174)
T ss_pred cc
Confidence 54
No 99
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.38 E-value=0.00064 Score=48.11 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=79.4
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHH
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALLRSL-GLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLL 88 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (160)
..+...|..||.+++|.+++-+-...+.-+ +-..+...++..|+.++...||.++-.+|.-.+.... ....-.+.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l----gv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL----GVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc----Ccceeecc
Confidence 457889999999999999998877766543 4567888899999999999999988777755552211 11112456
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcC
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAKMG 115 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~~~ 115 (160)
.+|+..+...+|+|+.++|+.+....+
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhCc
Confidence 789999999999999999999987644
No 100
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0018 Score=38.92 Aligned_cols=58 Identities=33% Similarity=0.609 Sum_probs=44.1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhc------CC---C-CCHHHHHHH----HHhhccCCCcceeHHHHHHH
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAKM------GQ---P-LTYKELTEM----IKEADTNGDGVISFNEFAAV 146 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~~------~~---~-~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~ 146 (160)
..|.+.|.++++.++--|+..++... |. + .++.++..+ ++.-|.|++|.|+|-||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 36999999999999999998888653 22 1 455565554 55558889999999999874
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.23 E-value=0.0017 Score=37.14 Aligned_cols=62 Identities=15% Similarity=0.368 Sum_probs=46.9
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCC----CCCceeHHHHHHHhc
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLRSLGL--KPSGDQIHVLLANMDAN----GNGAVEFDELVNAIL 73 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~ 73 (160)
+|..+|..+.. +.+.|+.++|.++|..--. ..+...+..++..+.++ ..+.++++.|..++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 36778888855 6889999999999975432 35788888888887554 367888888888874
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.18 E-value=0.00065 Score=29.68 Aligned_cols=26 Identities=38% Similarity=0.721 Sum_probs=16.6
Q ss_pred HHHHHhhhcCCCCCcccHHHHHHHHH
Q 042615 12 LRDIFARFDMDSDGSLTILELAALLR 37 (160)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~ 37 (160)
++.+|..+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566666666666666666666654
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.13 E-value=0.0011 Score=28.88 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=10.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHH
Q 042615 89 EIFRAFDRDGNGYITAAELAGSM 111 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~ 111 (160)
.+|+.+|.+++|.|+..+|..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34444444444444444444444
No 104
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0012 Score=53.39 Aligned_cols=147 Identities=22% Similarity=0.271 Sum_probs=115.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhh--
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDET-- 79 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-- 79 (160)
..++.++...+..+|..+.+. +|.++-...+.+|... .+....+.++|...|.+.+|.++..+|...+.......
T Consensus 121 p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 346788888889999999666 8999999988888643 46666788999999999999999999987652100000
Q ss_pred --------------------------------------------------------------------------------
Q 042615 80 -------------------------------------------------------------------------------- 79 (160)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (160)
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence
Q ss_pred HhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCC
Q 042615 80 ILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLD 153 (160)
Q Consensus 80 ~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 153 (160)
.......+..+|...|.+.+|.|+..+.+..+...| +....+..++...+..+.|.+++.+|+-.+......
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 001123466789999999999999999999999966 677889999999999999999999887776655433
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0026 Score=47.66 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
.|++++.+.+..-|+-..++.+|+|+-.--+.++.+. ++.-+++..||...|.++||.+++.|||..++
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4789999999999999999999999998888887654 46777999999999999999999999999884
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.97 E-value=0.017 Score=46.59 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHhhcCCCCCceeHHHHHHHhcccch
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSG-----DQIHVLLANMDANGNGAVEFDELVNAILPDMD 77 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 77 (160)
++++....++...|+.++....|.++++++..+|..+|+.... +++.++++..|.+.-|.+++.+|...+.....
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 4567788999999999999999999999999999999987663 34555666667777789999999998864433
Q ss_pred hhHhhhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 042615 78 ETILINQEQLLEIFRAFDRDGNGYITAAELAG 109 (160)
Q Consensus 78 ~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~ 109 (160)
.. .....+...|+.+-+++. .+..+|+..
T Consensus 820 ~l--~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 820 DL--DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hh--cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 22 223556667777744443 788888876
No 107
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.83 E-value=0.013 Score=33.94 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc-------CC----CCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCC
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKM-------GQ----PLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLD 153 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 153 (160)
++++.+|+.+ .|.+|.++...|..++... |. .-.+..++..|... .....|+.++|+.++...|..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~ 79 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQS 79 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCe
Confidence 5778888888 6888999999888877553 11 12677788888876 356679999999999999988
Q ss_pred cccCC
Q 042615 154 FFGLG 158 (160)
Q Consensus 154 ~~~~~ 158 (160)
+.|++
T Consensus 80 lVWLP 84 (90)
T PF09069_consen 80 LVWLP 84 (90)
T ss_dssp TTHHH
T ss_pred eeHHH
Confidence 88875
No 108
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0054 Score=46.02 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCCcccCCCC
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLDFFGLGLS 160 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 160 (160)
+-+..-|+...+|-.|+|+-.--++++.... +.-.++..|++.-|.+.+|.+++.|||..+.-......+.+||
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLP 304 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLP 304 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCC
Confidence 4566789999999999999999999998877 5568999999999999999999999999998766666666554
No 109
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.016 Score=34.95 Aligned_cols=67 Identities=24% Similarity=0.426 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHc------CC---C-CCHHHHHH----HHHhhcCCCCCceeHHHH
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSL------GL---K-PSGDQIHV----LLANMDANGNGAVEFDEL 68 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~~~----~~~~~d~~~~g~i~~~ef 68 (160)
++++++++ ...|...|-++++.++--|+..++... |. + +++.++++ +++--|.+++|.|+|-||
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 44555543 245677777888888887777776532 22 1 23444433 444446677788888877
Q ss_pred HHH
Q 042615 69 VNA 71 (160)
Q Consensus 69 ~~~ 71 (160)
+..
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 653
No 110
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.43 E-value=0.16 Score=41.23 Aligned_cols=123 Identities=15% Similarity=0.297 Sum_probs=89.5
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC--CCCc-----eeHHHHHHHhcccchhhHhhhHHHHHHHH
Q 042615 19 FDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDAN--GNGA-----VEFDELVNAILPDMDETILINQEQLLEIF 91 (160)
Q Consensus 19 ~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~-----i~~~ef~~~~~~~~~~~~~~~~~~~~~~f 91 (160)
+..+..|+|..+.+.+.+..- -.+..++..+..+... ++.. .+++.|..++.. .....++..+|
T Consensus 157 mqvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~k------lcpR~eie~iF 227 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNK------LCPRPEIEEIF 227 (1189)
T ss_pred hcccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHh------cCCchhHHHHH
Confidence 335678999999888776532 2224566666655432 2223 456666666532 23347899999
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcC----------CCCCHHHHHHHHHhhccCC----CcceeHHHHHHHHhhc
Q 042615 92 RAFDRDGNGYITAAELAGSMAKMG----------QPLTYKELTEMIKEADTNG----DGVISFNEFAAVMAKS 150 (160)
Q Consensus 92 ~~~D~~~~G~i~~~e~~~~~~~~~----------~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~~~ 150 (160)
..+..++.-++|.++|..+++... .+..+..+..+++.+.++. .|.++-+.|+.++...
T Consensus 228 ~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 228 RKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred HHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 999888888999999999997642 2467888999999998875 6899999999999874
No 111
>PLN02952 phosphoinositide phospholipase C
Probab=96.39 E-value=0.037 Score=43.20 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=61.0
Q ss_pred CCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHhhcc----
Q 042615 59 GNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ--PLTYKELTEMIKEADT---- 132 (160)
Q Consensus 59 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d~---- 132 (160)
+.|.++|++|..+..... ........++..+|..+-. +.+.++.++|..+|..... ..+.+.+..+++.+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k-~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFK-ITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred cCCCcCHHHHHHHHHHhc-cccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 357999999976654221 1112245789999999954 4478999999999988543 2556666666554411
Q ss_pred ---CCCcceeHHHHHHHHhhc
Q 042615 133 ---NGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 133 ---~~~g~i~~~ef~~~l~~~ 150 (160)
...+.++++.|..+|...
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred cccccccCcCHHHHHHHHcCc
Confidence 123469999999999853
No 112
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.27 E-value=0.078 Score=41.99 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHH
Q 042615 44 SGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKEL 123 (160)
Q Consensus 44 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~ 123 (160)
....+..++...|.+++|.+++.+-..++...-... ....+..+|+..+..++|.+..+++..+....+.. + ++
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l---~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r--p-ev 207 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL---SESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR--P-EV 207 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh---hHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--c-hH
Confidence 455588899999999999999998877764432222 22567778888888999999999999998887643 2 77
Q ss_pred HHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 124 TEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 124 ~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
..++..+..+ .+.++.++++.++...
T Consensus 208 ~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 208 YFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 7777777554 6778888877777654
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.02 Score=45.33 Aligned_cols=71 Identities=24% Similarity=0.390 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCCcccCCCC
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLDFFGLGLS 160 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 160 (160)
-...|..+ +.+.|+||-..-+.++...| +....+.+++...|.|+||+++..||.-.++-.-..+.|+++|
T Consensus 18 ~~~qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP 88 (1118)
T KOG1029|consen 18 HDAQFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLP 88 (1118)
T ss_pred HHHHHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCC
Confidence 34456666 57789999999999999988 5568899999999999999999999988887777777777776
No 114
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.06 E-value=0.025 Score=43.38 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcc
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILP 74 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (160)
++++.++...+..|..+|.+..|..+.+++.+++...+....+..+..+....+.+-+|.+...+|.+.+..
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 578999999999999999999999999999999998888899999999999999998999999999887743
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.91 E-value=0.032 Score=40.14 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=69.0
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHH
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALLRSLG---LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQ 86 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 86 (160)
.+|+..|..+-.+.++......+...-..+. .++=...+..||+.+|.+.++.++..|...+.. ......
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-------dknE~C 283 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-------DKNEAC 283 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc-------cCchhH
Confidence 4566677766555555555555544433222 234467788899999999999999888876542 223357
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMG 115 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~ 115 (160)
++.+|...|...||.|+..|.-..+...+
T Consensus 284 ikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 284 IKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHHHhhhcccccCccccchhhhhhccCC
Confidence 78889999999999999999888877766
No 116
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.82 E-value=0.02 Score=48.38 Aligned_cols=64 Identities=19% Similarity=0.445 Sum_probs=55.3
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCCc
Q 042615 90 IFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLDF 154 (160)
Q Consensus 90 ~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 154 (160)
.|+.+|++|.|.|+..+|..++..... .+..+++-++..+..|.+.-++|++|++-+.++..++
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~-ytqse~dfllscae~dend~~~y~dfv~rfhepakdi 4125 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH-YTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDI 4125 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc-chhHHHHHHHHhhccCccccccHHHHHHHhcCchhhc
Confidence 488889999999999999999987554 4678888899999999999999999999998876554
No 117
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.78 E-value=0.12 Score=33.31 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=43.0
Q ss_pred hcCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 94 FDRDGNGYITAAELAGSMAKMGQ---PLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 94 ~D~~~~G~i~~~e~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
|...+...++...|..+|+..++ .++...++.+|..+-..+...|+|++|..+|...
T Consensus 11 fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 11 FGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp SSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred hcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 34455568999999999988654 5788889999999866666779999999988764
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.69 E-value=0.22 Score=32.07 Aligned_cols=61 Identities=16% Similarity=0.429 Sum_probs=45.9
Q ss_pred HHHHhhh---cCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 13 RDIFARF---DMDSDGSLTILELAALLRSLG---LKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 13 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
+.+|..| -..+...|+...|..+++..+ ..++..++.-+|..+-..+..+|+|++|..++.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 3445544 355567899999999999755 358999999999998766677899999999884
No 119
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.55 E-value=0.1 Score=34.00 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc--CCCcccC
Q 042615 118 LTYKELTEMIKEADTNGDGVISFNEFAAVMAKS--TLDFFGL 157 (160)
Q Consensus 118 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~--~~~~~~~ 157 (160)
+-++..+++|..++....+.+|+.|..+++..+ +.+.+++
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW 134 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW 134 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh
Confidence 557888999999998888999999999999885 4555554
No 120
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.32 E-value=0.04 Score=39.66 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhccc
Q 042615 5 HIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPD 75 (160)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (160)
.+.=...+.=+|+.+|.|.++.|+..|++.+- ..-.+.-+..+|+.+|...+|.|+-.|++..+...
T Consensus 245 ~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 245 LPICKDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred CcchhhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 34445667889999999999999999998763 44667789999999999999999999999988543
No 121
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.08 E-value=0.081 Score=40.72 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
...-|..+|.++.|.++++++..+++..+..++++.+.+..+..+.+.+|.+...||..++.-
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 445699999999999999999999999988899999999999999999999999999887754
No 122
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.98 E-value=0.058 Score=41.95 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCC
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGD 135 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 135 (160)
-+.++|+.+|.+++|.++..++...+..+...-..+.+.-+++.+++..+
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 34445555555555555555555555444333333344444444444443
No 123
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.04 Score=44.92 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccc--------
Q 042615 5 HIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDM-------- 76 (160)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-------- 76 (160)
++..-..+...|..+|..++|.|+-.+-..++...+ +....+..+|...|..+.|..+...|...+...-
T Consensus 6 ~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~ 83 (847)
T KOG0998|consen 6 SPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGREL 83 (847)
T ss_pred CCCccchHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCc
Confidence 334446678899999999999999999988887554 6667888899999999889999999877662000
Q ss_pred -------------------------hh------------hHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCC
Q 042615 77 -------------------------DE------------TILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLT 119 (160)
Q Consensus 77 -------------------------~~------------~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~ 119 (160)
.. ...........+|+.+.+. .|.++....+-++...+ +.
T Consensus 84 ~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp 160 (847)
T KOG0998|consen 84 SAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LP 160 (847)
T ss_pred CccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CC
Confidence 00 0001123455678888654 89999999998888766 56
Q ss_pred HHHHHHHHHhhccCCCcceeHHHHHHHHhhcCC
Q 042615 120 YKELTEMIKEADTNGDGVISFNEFAAVMAKSTL 152 (160)
Q Consensus 120 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 152 (160)
.+.+..++...|.+.+|.++..+|.-.+.-...
T Consensus 161 ~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 161 SDVLGRIWELSDIDKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred hhhhccccccccccccCCCChhhhhhhhhHHHH
Confidence 677888999999999999999999877665443
No 124
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.73 E-value=0.032 Score=30.64 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccC-------CCcceeHHHHHH
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTN-------GDGVISFNEFAA 145 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~ 145 (160)
.+.+..+|+.+ .++.+.||.+||++.+.. +.+..+...+..- ..|.++|..|++
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 37889999999 888899999999988543 3334455555332 237799988875
No 125
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.18 E-value=0.27 Score=35.12 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=44.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhc-----CCCCCHHH-----------HHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAKM-----GQPLTYKE-----------LTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~~-----~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
-+|...|.++||+++..++..++..- ...-.+++ ...+++..|.|+++.|+.+||++.-.+.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 46778899999999999988877542 11111111 2336788899999999999999865543
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.16 E-value=0.11 Score=40.42 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHhhhcC-CC----CC---------cccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHH
Q 042615 2 GGLHIDQLNQLRDIFARFDM-DS----DG---------SLTILELAALLRSLG-LKPSGDQIHVLLANMDANGNGAVEFD 66 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~-~~----~g---------~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ 66 (160)
..|+.++++.+..+|..-=. +. .- .+..+.|...++.+. ...+.....++|+..|.+.+|.++|.
T Consensus 496 ~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~ 575 (671)
T KOG4347|consen 496 TSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFK 575 (671)
T ss_pred CccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHH
Confidence 35778888888888865211 10 11 133344444444322 22455568899999999999999999
Q ss_pred HHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHH
Q 042615 67 ELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAEL 107 (160)
Q Consensus 67 ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~ 107 (160)
+++..+......... +.+.-+|+.+|++++ ....++.
T Consensus 576 ~lv~gL~~l~~~~~~---ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 576 DLVSGLSILKAGDAL---EKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhhhHH---HHHHHHHhhccCCcc-ccccccc
Confidence 999998655444332 677788999999999 8888887
No 127
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.09 E-value=0.32 Score=39.32 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=89.2
Q ss_pred CCCHHHHHH-HHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHH-HHHHhhcCCCCCceeHHHHHHHhcccchhhH
Q 042615 3 GLHIDQLNQ-LRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIH-VLLANMDANGNGAVEFDELVNAILPDMDETI 80 (160)
Q Consensus 3 ~l~~~~~~~-l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 80 (160)
...+.+|.+ ++..+...|.+....++..+++.+|...+...+..... .-+... .-..+.++|++|.......+....
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccc
Confidence 445667765 46677778877777899999999998887776644322 222222 334568999999887755544333
Q ss_pred hhhHHHHHHHH--HHhcCCCCCcccHHHHHHHHHhcCCCCC---HHHHHHHHHhhccC-----CCcceeHHHHHHHHhhc
Q 042615 81 LINQEQLLEIF--RAFDRDGNGYITAAELAGSMAKMGQPLT---YKELTEMIKEADTN-----GDGVISFNEFAAVMAKS 150 (160)
Q Consensus 81 ~~~~~~~~~~f--~~~D~~~~G~i~~~e~~~~~~~~~~~~~---~~~~~~~~~~~d~~-----~~g~i~~~ef~~~l~~~ 150 (160)
..........| ..-+...--.|+..+|.+++........ -..++.+++.|-.| ....++..||+.+|-..
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhc
Confidence 32111111111 1112222257999999999976443221 12344455555322 45789999999998665
Q ss_pred CC
Q 042615 151 TL 152 (160)
Q Consensus 151 ~~ 152 (160)
..
T Consensus 295 eN 296 (1267)
T KOG1264|consen 295 EN 296 (1267)
T ss_pred cc
Confidence 43
No 128
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.60 E-value=0.19 Score=43.01 Aligned_cols=58 Identities=17% Similarity=0.387 Sum_probs=49.9
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 15 IFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 15 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
.|..+|+++.|.|+..+|.+++.. ....+..++.-+++....+.+...+|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 478899999999999999998763 3457788889999988889999999999998774
No 129
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=93.40 E-value=2 Score=30.42 Aligned_cols=103 Identities=11% Similarity=0.131 Sum_probs=57.8
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCC
Q 042615 23 SDGSLTILELAALLRSL--GLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNG 100 (160)
Q Consensus 23 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G 100 (160)
-||.++..|+. +.+.+ ...++.+.-..+...+........++.+|+..+...+......-..-+..+|++. -.||
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA--~ADG 144 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA--FADG 144 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--HhcC
Confidence 48999999987 33332 1345566633333444444445588999998875544222211111224456665 3568
Q ss_pred cccHHH---HHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 101 YITAAE---LAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 101 ~i~~~e---~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
.++..| ++.+...+| ++..+...+...+
T Consensus 145 ~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~~ 175 (267)
T PRK09430 145 SLHPNERQVLYVIAEELG--FSRFQFDQLLRMM 175 (267)
T ss_pred CCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 888888 333334445 6666666665543
No 130
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.27 E-value=0.083 Score=37.86 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCCCceeHHH---HHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 48 IHVLLANMDANGNGAVEFDE---LVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~e---f~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
+...|..+|.++++.|+-.| |..++.... ......+.+|+..|.++|.+|+..|++..+..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s-----~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS-----KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhc-----cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45556667777666665444 333333221 11245666777777777777777777776654
No 131
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.75 E-value=0.48 Score=38.71 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHhhccCCCcceeHHHHHHHHhhcCC
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTY-----KELTEMIKEADTNGDGVISFNEFAAVMAKSTL 152 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 152 (160)
...++..|+.+++...|.++.+++...+...|..... .++..+...-+++..|.+++.+|.++|.+...
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 3578889999999999999999999999999987653 22333444445566689999999999987543
No 132
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.39 E-value=0.17 Score=36.39 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCCCCcccHHH---HHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 87 LLEIFRAFDRDGNGYITAAE---LAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
+.-.|..+|++.++.|...| |+.++..... ...-...+++.-|.|++..|+++|+..+|....
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~--~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK--PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhcc--HHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 33459999999999999988 5556655332 234557788999999999999999999997654
No 133
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=92.34 E-value=0.18 Score=30.50 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHhc
Q 042615 43 PSGDQIHVLLANMDANGNGAVEFDELVNAIL 73 (160)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 73 (160)
++++++++++..+..+..|++.|.+|+..+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6899999999999999999999999999874
No 134
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=92.23 E-value=1.3 Score=26.12 Aligned_cols=81 Identities=22% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCc
Q 042615 24 DGSLTILELAALLRSLG--LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGY 101 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 101 (160)
||.++..|...+-.-+. ..++..+...+...+........++.+|...+...... .....-+..+|++. -.||.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~l~~L~~vA--~ADG~ 88 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY--EERLELVEALWEVA--YADGE 88 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHH--HhcCC
Confidence 78899888876654321 35677788888888876666678899998887654321 12224555567776 45678
Q ss_pred ccHHHHH
Q 042615 102 ITAAELA 108 (160)
Q Consensus 102 i~~~e~~ 108 (160)
++..|-.
T Consensus 89 ~~~~E~~ 95 (104)
T cd07313 89 LDEYEEH 95 (104)
T ss_pred CCHHHHH
Confidence 8887744
No 135
>PLN02952 phosphoinositide phospholipase C
Probab=91.74 E-value=2.3 Score=33.64 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHh----c-
Q 042615 23 SDGSLTILELAALLRSLGL--KPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAF----D- 95 (160)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~----D- 95 (160)
+.|.+++++|..+.+.+.. .....++..+|..+..+ .+.++.++|..++...-.... ...+.+..++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~-~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELD-CTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcC-CCHHHHHHHHHHHHhhccc
Confidence 4689999999888776543 23688999999999554 468999999998854322211 1123344443322 1
Q ss_pred --CCCCCcccHHHHHHHHHh
Q 042615 96 --RDGNGYITAAELAGSMAK 113 (160)
Q Consensus 96 --~~~~G~i~~~e~~~~~~~ 113 (160)
..+.+.++.+.|..++..
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccCcCHHHHHHHHcC
Confidence 112345899999988864
No 136
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.39 E-value=1.7 Score=34.28 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHhhcc-CCCcceeHHHHHHHHhhc
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ--PLTYKELTEMIKEADT-NGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~ 150 (160)
....+..+|..+.. ++.++.++|..+|..... ..+.+.+..+++.+.. -..+.++++.|..||...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 34688889999853 479999999999988543 2466777788887632 235679999999999864
No 137
>PLN02228 Phosphoinositide phospholipase C
Probab=90.11 E-value=2.2 Score=33.57 Aligned_cols=66 Identities=15% Similarity=0.315 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC--CCCHHHHHHHHHhhccC----CCcceeHHHHHHHHhhc
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ--PLTYKELTEMIKEADTN----GDGVISFNEFAAVMAKS 150 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~ 150 (160)
..+++..+|..+-. ++.++.++|..++..... ..+.+.+..++..+... ..|.++++.|..||...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 45788889988853 357999999999987543 24556677888887543 34679999999999765
No 138
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.04 E-value=0.69 Score=36.05 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKP----SGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
.|++.-++.+..+|..+|.++||-++..|+..++......+ ...+. .-.+..|.++|.-|+...
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQW 375 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHH
Confidence 47888899999999999999999999999999998765433 11111 112356899999887764
No 139
>PLN02230 phosphoinositide phospholipase C 4
Probab=89.98 E-value=2.3 Score=33.62 Aligned_cols=67 Identities=15% Similarity=0.317 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-C--CCCHHHHHHHHHhhcc-------CCCcceeHHHHHHHHhhc
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMG-Q--PLTYKELTEMIKEADT-------NGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~-~--~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~~~ 150 (160)
...++..+|..+. .+.+.++.++|..+|...+ . ..+.+.+..++..+-. -+.+.++++.|..||...
T Consensus 27 p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4578999999995 3448999999999998865 2 2356666677665422 134569999999999763
No 140
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=89.98 E-value=2.4 Score=24.32 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 100 GYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 100 G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
..||..||..+.+.++.+++++++..++..+-.++-.-.+-++=..++.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999886665455555544444443
No 141
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.58 E-value=1.8 Score=31.14 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhh----H-----hhhH-H--HHH-HHHHH
Q 042615 28 TILELAALLRSL-GLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDET----I-----LINQ-E--QLL-EIFRA 93 (160)
Q Consensus 28 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~----~-----~~~~-~--~~~-~~f~~ 93 (160)
+..+++.++..+ |..+...+-...|...|.+++|.++=.+.-..+...+... + .... + +++ .+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 455666665543 3444444455566666777777777666655543222110 0 0000 1 111 24666
Q ss_pred hcCCCCCcccHHHHHHHHHh
Q 042615 94 FDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 94 ~D~~~~G~i~~~e~~~~~~~ 113 (160)
.|.++|..||.++|...-..
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 78888888888887766544
No 142
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.89 E-value=3.2 Score=26.27 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=36.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-------CCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCC
Q 042615 25 GSLTILELAALLRSLGLKPSGDQIHVLLANMDAN-------GNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRD 97 (160)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 97 (160)
+.|+++||.++=.-+. .+...+..++..+..+ ..+.|+|+-|..++..++... ...+-...+|..|-..
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d--~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD--LPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S----HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHhCc
Confidence 4677777766422221 1233455566655332 356899999999998777655 3346778899999544
Q ss_pred C
Q 042615 98 G 98 (160)
Q Consensus 98 ~ 98 (160)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 3
No 143
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=88.48 E-value=1.5 Score=24.04 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 102 ITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 102 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
++-+++..++...|..++..++..+++.-+..+--..+-..+..||..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHH
Confidence 344567777777777777777777777655555455565666666554
No 144
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.32 E-value=0.7 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 118 LTYKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 118 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
+++++++.+...+-.|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6889999999999999999999999998876
No 145
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=86.55 E-value=6 Score=32.12 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=85.4
Q ss_pred HHHHHHHhhhcCCC-CCcccHHHHHHHHHH--------cCC----CCC-HHHHHHHHHhhcCCCCCceeHHHHHHHhccc
Q 042615 10 NQLRDIFARFDMDS-DGSLTILELAALLRS--------LGL----KPS-GDQIHVLLANMDANGNGAVEFDELVNAILPD 75 (160)
Q Consensus 10 ~~l~~~f~~~d~~~-~g~i~~~e~~~~l~~--------~~~----~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (160)
.-..++|...+..+ +..+...+....|.. .|. ++- +--+..+++.||+..+|.|..-.|...+...
T Consensus 420 tl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~l 499 (966)
T KOG4286|consen 420 SLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISL 499 (966)
T ss_pred HHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHH
Confidence 33456677766553 445566655554431 121 111 2236778999999999999888776655443
Q ss_pred chhhHhhhHHHHHHHHHHhcCCCCCcccHHH-------HHHHHHhc------CCCCCHHHHHHHHHhhccCCCcceeHHH
Q 042615 76 MDETILINQEQLLEIFRAFDRDGNGYITAAE-------LAGSMAKM------GQPLTYKELTEMIKEADTNGDGVISFNE 142 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e-------~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~g~i~~~e 142 (160)
.... ..+.++.+|...-.++.-++ ... +.++.+.+ |..--+-.++..|+ ..++...|+...
T Consensus 500 ck~~---leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~--~v~~~pei~~~~ 573 (966)
T KOG4286|consen 500 CKAH---LEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQ--FVNNKPEIEAAL 573 (966)
T ss_pred hcch---hHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHH--hcCCCCcchHHH
Confidence 3222 23678889998855554443 333 33333332 32222344567777 345667899999
Q ss_pred HHHHHhhcCCCcccCC
Q 042615 143 FAAVMAKSTLDFFGLG 158 (160)
Q Consensus 143 f~~~l~~~~~~~~~~~ 158 (160)
|..++...|--+.|++
T Consensus 574 f~dw~~~epqsmVwL~ 589 (966)
T KOG4286|consen 574 FLDWMRLEPQSMVWLP 589 (966)
T ss_pred HHHHhccCcchhhHHH
Confidence 9999988876666643
No 146
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.23 E-value=19 Score=30.21 Aligned_cols=89 Identities=12% Similarity=0.230 Sum_probs=59.5
Q ss_pred cCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcC--CCCCcccHH-----HHHHHHHhcCCCCCHHHHHHHHH
Q 042615 56 DANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDR--DGNGYITAA-----ELAGSMAKMGQPLTYKELTEMIK 128 (160)
Q Consensus 56 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~--~~~G~i~~~-----e~~~~~~~~~~~~~~~~~~~~~~ 128 (160)
..+..|+|-...++..+..-.. ...+..+...+.. ++...|..+ .|..++..+. ...+++.+|.
T Consensus 158 qvn~~grip~knI~k~F~~~k~------~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc---pR~eie~iF~ 228 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSADKK------EKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC---PRPEIEEIFR 228 (1189)
T ss_pred cccccccccHHHHHHHhhcCCc------hhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC---CchhHHHHHH
Confidence 4567788888877777643211 1344445444432 233345444 4566666644 2378899999
Q ss_pred hhccCCCcceeHHHHHHHHhhcCCC
Q 042615 129 EADTNGDGVISFNEFAAVMAKSTLD 153 (160)
Q Consensus 129 ~~d~~~~g~i~~~ef~~~l~~~~~~ 153 (160)
.+..+...++|.+++++|++++..+
T Consensus 229 ki~~~~kpylT~~ql~dfln~~QrD 253 (1189)
T KOG1265|consen 229 KISGKKKPYLTKEQLVDFLNKKQRD 253 (1189)
T ss_pred HhccCCCccccHHHHHHHHhhhccC
Confidence 9999998999999999999998754
No 147
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=86.15 E-value=4.6 Score=23.17 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Q 042615 26 SLTILELAALLRSLGLKPSGDQIHVLLANMDAN 58 (160)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 58 (160)
.||.+||..+-+..+.+++..+.+.+...+-..
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 589999999999999999999999999888433
No 148
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=85.39 E-value=3.2 Score=31.25 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=34.0
Q ss_pred CCCCceeHHHHHHHhcccchhh-HhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 58 NGNGAVEFDELVNAILPDMDET-ILINQEQLLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 58 ~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
.++...+-.+||.......... .....+.++.+-+.+|.|.+|.|+++|=-.+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 4455666666766543322211 1122456777788888888888888877666655
No 149
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.07 E-value=2.2 Score=37.65 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCC----HHHHHHHHHhhcCCCCCceeHHHHHHHhcc
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPS----GDQIHVLLANMDANGNGAVEFDELVNAILP 74 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (160)
.|++.+++.++++|..+|++..|.|...++..+++.+..++. ... +.+.-......++.|++.+-+.++..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 478899999999999999999999999999999887544321 111 22222233446789999888777643
No 150
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=84.32 E-value=6.9 Score=23.55 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
+..+|..+...++-..+..+++.++...|.....+.+..++..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 34567788888888999999999999999999999999999887
No 151
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=82.72 E-value=5.4 Score=21.84 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 27 LTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
++.+++..++...+..++.+++..+++.-+..+--..+-..+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4556888888888888999999888887655444444444444444
No 152
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=81.28 E-value=8.7 Score=22.56 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcc
Q 042615 24 DGSLTILELAALLRSLG-LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYI 102 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i 102 (160)
||.++..|...+-.-+. ..........+...+........++.+|...+.............-+..+|.+.- .||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~--ADG~~ 90 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAY--ADGEL 90 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCCC
Confidence 78888887765433221 2333334444444443323333677888777754321122222244555666663 46788
Q ss_pred cHHHHH
Q 042615 103 TAAELA 108 (160)
Q Consensus 103 ~~~e~~ 108 (160)
+..|-.
T Consensus 91 ~~~E~~ 96 (106)
T cd07316 91 SEAERE 96 (106)
T ss_pred CHHHHH
Confidence 887743
No 153
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=80.93 E-value=8.4 Score=23.95 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCC
Q 042615 23 SDGSLTILELAALLRSL--GLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNG 100 (160)
Q Consensus 23 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G 100 (160)
-||.++.+|...+...+ ....+......+...++.-.....++.+++..+...+.... ...-+..++.+.-. ||
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--r~~ll~~l~~ia~A--DG 111 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEE--REDLLRMLIAIAYA--DG 111 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHH--HHHHHHHHHHHCTC--TT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHH--HHHHHHHHHHHHhc--CC
Confidence 48899999887766544 33455666777777776555557888899888765444221 22445556777644 56
Q ss_pred cccHHH---HHHHHHhcCCC
Q 042615 101 YITAAE---LAGSMAKMGQP 117 (160)
Q Consensus 101 ~i~~~e---~~~~~~~~~~~ 117 (160)
.++..| +..+...+|++
T Consensus 112 ~~~~~E~~~l~~ia~~L~i~ 131 (140)
T PF05099_consen 112 EISPEEQEFLRRIAEALGIS 131 (140)
T ss_dssp C-SCCHHHHHHHHHHHCTS-
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 666666 33333445543
No 154
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=80.84 E-value=2.2 Score=17.52 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=9.0
Q ss_pred cCCCCCcccHHHHHH
Q 042615 95 DRDGNGYITAAELAG 109 (160)
Q Consensus 95 D~~~~G~i~~~e~~~ 109 (160)
|.+++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 456777777766543
No 155
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=80.32 E-value=10 Score=22.82 Aligned_cols=54 Identities=19% Similarity=0.411 Sum_probs=43.4
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q 042615 13 RDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNA 71 (160)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 71 (160)
...|..+..-++...+..+++.+|..+|.....+.+..+++.+ +|+ +.+|.+..
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 4456667677777899999999999999999999999999988 455 66666553
No 156
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.28 E-value=11 Score=29.90 Aligned_cols=62 Identities=13% Similarity=0.357 Sum_probs=45.7
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhcC-CCCCceeHHHHHHHhcc
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLRSLGL--KPSGDQIHVLLANMDA-NGNGAVEFDELVNAILP 74 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 74 (160)
++..+|..+.. ++.|+.++|..+|..... ..+.+.+..++..+.. .+.+.++++.|..++..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45666777743 479999999999987554 3567778888887632 23567999999998854
No 157
>PLN02223 phosphoinositide phospholipase C
Probab=80.24 E-value=12 Score=29.29 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHH---HhcC--CCCCHHHHHHHHHhhccC--------CCcceeHHHHHHHHhh
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSM---AKMG--QPLTYKELTEMIKEADTN--------GDGVISFNEFAAVMAK 149 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l~~ 149 (160)
..+.+..+|..+ ..+.|.++.+.+..++ ...+ ...+.++.+.+++.+-.. ..+.++++.|.+||..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 346788888888 4677889999888888 4432 235566666666655322 2356999999999987
Q ss_pred c
Q 042615 150 S 150 (160)
Q Consensus 150 ~ 150 (160)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 4
No 158
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=79.91 E-value=3.7 Score=25.97 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccC-------CCcceeHHHHHHHHhh
Q 042615 99 NGYITAAELAGSMAKMGQPLTYKELTEMIKEADTN-------GDGVISFNEFAAVMAK 149 (160)
Q Consensus 99 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l~~ 149 (160)
-+.++.+||.+.-+-+.. +...+..+++.|..+ ..+.|+|+.|..+|..
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 356778888777655443 334566666666433 3557999999998874
No 159
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=79.90 E-value=4.1 Score=22.49 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccch
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMD 77 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 77 (160)
+-+++...+..++... ++......+...|+.-+.++|+-++|+..+...+.
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4456666666666654 23333444444444445566777777766654443
No 160
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=79.79 E-value=5.7 Score=23.49 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcC---CCCCcccHHHHHHHHHh
Q 042615 48 IHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDR---DGNGYITAAELAGSMAK 113 (160)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~---~~~G~i~~~e~~~~~~~ 113 (160)
++.-|..+.. +|.+....|..++... ...+-..++|..+-. -....|+.+|++.++..
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CIGM~------dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECIGMK------DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHHT--------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhcCCc------ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 4444544433 5666666666665422 111233333333321 11356777777766655
No 161
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.48 E-value=2.2 Score=31.49 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=48.5
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGD-QIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
..+++.|+.+|+.++|+|+..-++.++..++...++. .+..+-..+|+..-|-|-..+|...+
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 4578889999999999999999999999888655544 45555556777777777777776554
No 162
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=79.23 E-value=14 Score=23.80 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhH
Q 042615 1 MGGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETI 80 (160)
Q Consensus 1 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 80 (160)
|..+++..-..++.++.... .+|.+...++...|. .+...+..+++.+.. .|.|.|..+........-...
T Consensus 1 ~~~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~~--~GlV~~~~y~gi~LT~~G~~~ 71 (154)
T COG1321 1 MAMLSETEEDYLETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLER--LGLVEYEPYGGVTLTEKGREK 71 (154)
T ss_pred CCccchHHHHHHHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHHH--CCCeEEecCCCeEEChhhHHH
Confidence 45677888888888888775 688899999988763 444466667777743 467777665443211100000
Q ss_pred hh---hHHH-HHHHHH-HhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhc
Q 042615 81 LI---NQEQ-LLEIFR-AFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEAD 131 (160)
Q Consensus 81 ~~---~~~~-~~~~f~-~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d 131 (160)
.. .... +..++. .. -+++++...--..+...++++.++.+.+.++
T Consensus 72 a~~~~r~hrlle~fL~~~l------g~~~~~~~~ea~~leh~~s~~~~~rl~~~l~ 121 (154)
T COG1321 72 AKELLRKHRLLERFLVDVL------GLDWEEAHEEAEGLEHALSDETAERLDELLG 121 (154)
T ss_pred HHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhC
Confidence 10 0011 122222 12 2455555544455556678888888887775
No 163
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=79.09 E-value=10 Score=24.76 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHH
Q 042615 27 LTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAE 106 (160)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e 106 (160)
++..+|..+|.......+..+++.+-..+..+-. .+. .++...+...+..........+...++.-..-.++.++.++
T Consensus 1 m~~~eL~~~Lk~~~~~~si~DL~~i~~~l~~~~~-~lp-~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~~~~~~~~d~~~ 78 (163)
T PF09888_consen 1 MTKGELLEILKEEASNYSIYDLMKIRGFLEKDIK-YLP-PEYREKYIESFFEYFFGTYHEIKNMYRSGSFIEDFEIDEEE 78 (163)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCHHH
Confidence 4567888888876667777777776555532211 111 23333332222222222222333333333233344577788
Q ss_pred HHHHHHhcCCC----CCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCCcccCCCC
Q 042615 107 LAGSMAKMGQP----LTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLDFFGLGLS 160 (160)
Q Consensus 107 ~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 160 (160)
+..++..+... ..+.....+.. -..-|+-++.+.|.+-.|.++|
T Consensus 79 ~~~~~~~i~~~~~~~~~~~~~~~l~~----------lis~Y~~FI~~~PlHPvG~~FP 126 (163)
T PF09888_consen 79 FKEFLNMIEDGCSYSDEESEFRKLYY----------LISPYLIFILKEPLHPVGMPFP 126 (163)
T ss_pred HHHHHHHHHHhhccCCcchhHHHHHH----------HHHHHHHHHhCCCCCCCCCCCC
Confidence 88777664110 11111222211 1345777888888888888876
No 164
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.57 E-value=2.1 Score=31.61 Aligned_cols=62 Identities=24% Similarity=0.384 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCC-HHHHHHHHHhhccCCCcceeHHHHHH
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLT-YKELTEMIKEADTNGDGVISFNEFAA 145 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~ 145 (160)
.+.++++|..+|+.+.|+|+-+-++.++.......+ .+.+..+-+.+++..-|-|-.++|..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 468999999999999999999999999999874444 33444444455666666665555443
No 165
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.38 E-value=1.8 Score=34.69 Aligned_cols=67 Identities=18% Similarity=0.365 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---C-----CCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKM---G-----QPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~---~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.+.++-.|...|. ++|.++.++++.++... + ...+.+....+++..+.+..|.+.++++...+...+
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIP 91 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhch
Confidence 3566667777765 77777777777666542 1 122334444566666677777777777766666554
No 166
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=77.79 E-value=13 Score=22.59 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
++..+|..+-..++..+|.+++..++...|.......+..++..+
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 344566677677888899999999999999999888888888888
No 167
>PLN02228 Phosphoinositide phospholipase C
Probab=77.19 E-value=19 Score=28.54 Aligned_cols=62 Identities=11% Similarity=0.328 Sum_probs=44.5
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCC----CCCceeHHHHHHHhcc
Q 042615 11 QLRDIFARFDMDSDGSLTILELAALLRSLGL--KPSGDQIHVLLANMDAN----GNGAVEFDELVNAILP 74 (160)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~ 74 (160)
++..+|..+.. ++.|+.++|.++|..... ..+.+.+..++..+... ..|.++.+.|...+..
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34566777643 357999999999986543 35567788888887543 2467999999998853
No 168
>PLN02230 phosphoinositide phospholipase C 4
Probab=77.18 E-value=19 Score=28.72 Aligned_cols=64 Identities=14% Similarity=0.270 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhcC-------CCCCceeHHHHHHHhcc
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALLRSLGL---KPSGDQIHVLLANMDA-------NGNGAVEFDELVNAILP 74 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~~ 74 (160)
.+++.+|..+..+ ++.|+.++|.++|..... ..+.+.+..++..+-. -+.+.++.+.|...+..
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4667889998433 489999999999987653 2356666777654421 12346999999998743
No 169
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=76.17 E-value=22 Score=24.37 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=63.0
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHH
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALLRSLG---LKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQ 86 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 86 (160)
.++.++....-..+.|.|+..|+...+.... ..++++++.+....+..-+.| +....|-.-...............
T Consensus 97 ~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~ 175 (223)
T PF04157_consen 97 VQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKD 175 (223)
T ss_dssp HHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HH
T ss_pred HHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHH
Confidence 3455555555455567889999988887643 247888888888888777665 443333211100000110111134
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
...+.........|.+|..++..-+. ++.......+..+
T Consensus 176 ~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 176 QSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 44455555345668999988887665 4555555555544
No 170
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=75.67 E-value=13 Score=21.59 Aligned_cols=62 Identities=15% Similarity=0.308 Sum_probs=36.3
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHHHH-------cC----CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcc
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALLRS-------LG----LKPSGDQIHVLLANMDANGNGAVEFDELVNAILP 74 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-------~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (160)
+.++.+|..+ .+++|.++...|..+|.. ++ ....+..+...|... .....|+.++|+.++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4567788888 788999999988887763 11 112455566666654 23456888888887743
No 171
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=75.47 E-value=3.9 Score=22.58 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
+..+...++.=+.+.|+.+||...++.
T Consensus 27 ~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 27 MDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 333333333334555555555555554
No 172
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=75.30 E-value=19 Score=23.04 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=24.6
Q ss_pred HHHHHhcCCCCCHHHHHHHH----------HhhccCCCcceeHHHHHHHH
Q 042615 108 AGSMAKMGQPLTYKELTEMI----------KEADTNGDGVISFNEFAAVM 147 (160)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~----------~~~d~~~~g~i~~~ef~~~l 147 (160)
..-+..+|+.++++++..++ ..+-.+..|.++...|.+|+
T Consensus 96 ~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 96 EQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 33344556666777666665 21234567888888877663
No 173
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=74.99 E-value=6.5 Score=23.11 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=21.3
Q ss_pred CCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 60 NGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 60 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
||.++-.|-...- ..+.............+...+........+..++...+..
T Consensus 13 DG~v~~~E~~~i~-~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAID-RLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHH-HHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555554332 2222211112233334444443333344455555544443
No 174
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=74.44 E-value=8.9 Score=18.93 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhcCC--CCCcccHHHHHHHHHH
Q 042615 7 DQLNQLRDIFARFDMD--SDGSLTILELAALLRS 38 (160)
Q Consensus 7 ~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~~ 38 (160)
.-+..+..+|+.+... ....++..||+.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4466788889888632 3568999999998864
No 175
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=74.09 E-value=13 Score=21.91 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHHcC--CC---CCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCC
Q 042615 24 DGSLTILELAALLRSLG--LK---PSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDG 98 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~--~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 98 (160)
||.++.+|...+...+. .. .....+..++...-..- ...+..++...+...... .....-+..++... .-
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~ia--~a 90 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPP--ELRETAFAVAVDIA--AA 90 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCH--HHHHHHHHHHHHHH--Hc
Confidence 78888888877766543 22 23344444444442210 033445565555443321 11123344456666 34
Q ss_pred CCcccHHHH
Q 042615 99 NGYITAAEL 107 (160)
Q Consensus 99 ~G~i~~~e~ 107 (160)
||.++..|-
T Consensus 91 DG~~~~~E~ 99 (111)
T cd07176 91 DGEVDPEER 99 (111)
T ss_pred cCCCCHHHH
Confidence 577777663
No 176
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=73.59 E-value=20 Score=22.68 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCC-----CcceeHHHHHHHHhhcCCCcccCCCC
Q 042615 102 ITAAELAGSMAKMGQPLTYKELTEMIKEADTNG-----DGVISFNEFAAVMAKSTLDFFGLGLS 160 (160)
Q Consensus 102 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~g~i~~~ef~~~l~~~~~~~~~~~~~ 160 (160)
.|.+|++.+....+.+++++++..+++.++.-+ +-.|+..--...+.+.......+++|
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~~r~~~R~VtVP 90 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIREVRRAARQVTVP 90 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHHHHhcCCccccc
Confidence 577888888776777788899888888886642 23466655555555554444444443
No 177
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.57 E-value=13 Score=20.48 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
+-.|+.+-++..+...|.++|+..++++++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45799999999999999999999999998865
No 178
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=73.06 E-value=1.4 Score=29.47 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCC
Q 042615 98 GNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLD 153 (160)
Q Consensus 98 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 153 (160)
-||.++..|+.-+ ++--+ .-+.-+..+|+.-|.|++|.|+++||..++.-...+
T Consensus 201 ~d~~~sh~el~pl-~ap~i-pme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq~d 254 (259)
T KOG4004|consen 201 IDGYLSHTELAPL-RAPLI-PMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKD 254 (259)
T ss_pred ccccccccccccc-cCCcc-cHHhhchhhhhcccCCCCCceeHHHhhcccCcchhc
Confidence 4788888887532 21112 234557789999999999999999999887655544
No 179
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=73.02 E-value=20 Score=22.33 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
+..++..||++++|.|++-.++..+..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 445788999999999999999877654
No 180
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=72.71 E-value=18 Score=21.85 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 88 LEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 88 ~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
..+|..+-..++..+|.+++..++...|.......+..+++.+.. .++++.+.--..
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 345666667788899999999999999999888888888887732 455666554433
No 181
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=71.84 E-value=13 Score=20.07 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCC
Q 042615 97 DGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNG 134 (160)
Q Consensus 97 ~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (160)
..++.++..++...+...|..+++..+..-++.++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 35578999999999988898888999999998887665
No 182
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=71.68 E-value=18 Score=21.73 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=36.1
Q ss_pred hhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---CC-CCCHHHHHHHHHh
Q 042615 54 NMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM---GQ-PLTYKELTEMIKE 129 (160)
Q Consensus 54 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~---~~-~~~~~~~~~~~~~ 129 (160)
.||+..+.+|+.++....+..- .-|++.|.....-||..=+.+++... |. -++..-+..+++.
T Consensus 11 LYDT~tS~YITLedi~~lV~~g-------------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~ 77 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREG-------------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRF 77 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCC-------------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 3555556666666665554211 12444554433456666665555432 22 2556666666666
Q ss_pred hccCCCc
Q 042615 130 ADTNGDG 136 (160)
Q Consensus 130 ~d~~~~g 136 (160)
++....|
T Consensus 78 yg~~~q~ 84 (107)
T TIGR01848 78 YGGSMQS 84 (107)
T ss_pred hChhHHH
Confidence 6554444
No 183
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=70.99 E-value=15 Score=19.93 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
+-.|+.+-++......|.++|+..+..+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55799999999999999999999999998765
No 184
>PLN02223 phosphoinositide phospholipase C
Probab=68.46 E-value=34 Score=27.02 Aligned_cols=64 Identities=9% Similarity=0.075 Sum_probs=45.5
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHHHH---HHcC--CCCCHHHHHHHHHhhcCCC--------CCceeHHHHHHHhcc
Q 042615 10 NQLRDIFARFDMDSDGSLTILELAALL---RSLG--LKPSGDQIHVLLANMDANG--------NGAVEFDELVNAILP 74 (160)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~~--------~g~i~~~ef~~~~~~ 74 (160)
..++.+|..+ ..++|.++.+.+.++| .... ...+.++++.++..+-... .+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4567889888 4667899999999988 4433 3467777777776653322 255899999998854
No 185
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=67.93 E-value=3.4 Score=27.76 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 042615 59 GNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSM 111 (160)
Q Consensus 59 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~ 111 (160)
-||.++-.+..-.....+ .....+.++|...|.++||.|+..|....+
T Consensus 201 ~d~~~sh~el~pl~ap~i-----pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLI-----PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCcc-----cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 466676666655443222 122456667777777777777777765544
No 186
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=66.80 E-value=15 Score=19.80 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=17.0
Q ss_pred HHhcCCCCCcccHHHHHHHHHh
Q 042615 92 RAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 92 ~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
+.+|...+..||.++++++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4567788888888888888765
No 187
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=65.39 E-value=11 Score=21.31 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=19.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccC
Q 042615 98 GNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTN 133 (160)
Q Consensus 98 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~ 133 (160)
..|+||.+++..++-... ++.+.+..++..+...
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 457788888877776544 6667777777776443
No 188
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.70 E-value=30 Score=21.65 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhh-----------------hHHHHHHHHH
Q 042615 30 LELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILI-----------------NQEQLLEIFR 92 (160)
Q Consensus 30 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-----------------~~~~~~~~f~ 92 (160)
+.+.+++...+..++.+++...++.=|.+|=....=....+++...+...... -...++.+|.
T Consensus 19 n~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~ 98 (155)
T COG4807 19 NDLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFS 98 (155)
T ss_pred hHHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhh
Confidence 45666666666777777777776665544432332223333332222211110 0123444444
Q ss_pred HhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 93 AFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 93 ~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
.- ..|+..++...+++++..++..+|+.-|..+- +=.=+.|+.++.+
T Consensus 99 lK---------~~Dm~~I~~~~~f~vS~pElsAlfR~~~hkN~-r~CGDq~lR~FLk 145 (155)
T COG4807 99 LK---------TDDMLAILTEQQFRVSMPELSALFRAPDHKNF-RECGDQFLRYFLK 145 (155)
T ss_pred cc---------cchHHHHHhccCcccccHHHHHHHhCCCccch-hhhHHHHHHHHHH
Confidence 33 24688888888899999999999877644321 1112345555544
No 189
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=64.31 E-value=17 Score=18.11 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 042615 104 AAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVM 147 (160)
Q Consensus 104 ~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 147 (160)
.+|....+..+| .+..++..++..... ...++.++.++.-
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 357788888888 678888888888865 4446677766543
No 190
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=64.27 E-value=30 Score=21.09 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=34.7
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
.+|...-..++..+|.+++..++...|.......+..++..+
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 445555556777899999999999999998888888888888
No 191
>PRK00523 hypothetical protein; Provisional
Probab=64.23 E-value=23 Score=19.65 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=28.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
+-.|+.+-++....+.|.++|+..+.++++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45799999999999999999999999998876
No 192
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=63.05 E-value=16 Score=19.59 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHH
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEM 126 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~ 126 (160)
.|+.+||..+++.....++.+++.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888888777787777654
No 193
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.05 E-value=8.1 Score=34.41 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCC----CHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCCc
Q 042615 84 QEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPL----TYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLDF 154 (160)
Q Consensus 84 ~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 154 (160)
.+...++|..+|++++|.|...++..+++.+..++ ..+. +-+...+....++.|++.+-.-.+.+...++
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~l~i 1489 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRVLGI 1489 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHhhcc
Confidence 36788899999999999999999999998874432 1111 3334444555667777777777766654443
No 194
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=62.01 E-value=75 Score=24.85 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh---cC-----CCCCceeHHHHHHHhc
Q 042615 15 IFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANM---DA-----NGNGAVEFDELVNAIL 73 (160)
Q Consensus 15 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~~~ 73 (160)
+|..+...+++.++.--|..+|+..|..-++.-+..++... +. .+.+.++-+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 56666555679999999999999999887776666665544 32 2345678888877763
No 195
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=61.70 E-value=23 Score=18.84 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 25 GSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
-.+|.+|+...+..++-.++..++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 3577788888888777777777777777766
No 196
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=61.66 E-value=29 Score=19.98 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=18.1
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHH
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEF 143 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 143 (160)
.|.+.+|+..+.....-....+...+-..+|...+++||.-||
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeF 64 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEF 64 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhh
Confidence 3555555555544322222233344444445555555554443
No 197
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=60.73 E-value=17 Score=26.74 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 88 LEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 88 ~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
..+.-.+|+.+.|.+++--.+..+......--.+.++.+|... .+.+|.+.+..|..++.+
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 3446677999999999998888887765433456677777777 566777776666666654
No 198
>PHA02105 hypothetical protein
Probab=60.23 E-value=24 Score=18.55 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCCCC--ceeHHHHHHHh
Q 042615 26 SLTILELAALLRSLG---LKPSGDQIHVLLANMDANGNG--AVEFDELVNAI 72 (160)
Q Consensus 26 ~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g--~i~~~ef~~~~ 72 (160)
+++.+++..++.... +++..+.+.++-..+....-. .++|+||-+.+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 468888888876432 456666677776666554433 56899987765
No 199
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=58.85 E-value=27 Score=27.09 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhH
Q 042615 5 HIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQ 84 (160)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 84 (160)
..+.++....+|...-+.+...|+..++..++..++.....++-.+.|...+. +...+.|.+++..+. ......
T Consensus 480 ~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~-s~~gv~yl~v~~~i~-----sel~D~ 553 (612)
T COG5069 480 VWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAG-SVSGVFYLDVLKGIH-----SELVDY 553 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcc-ccccchHHHHHHHHh-----hhhcCh
Confidence 34556667778888767777789999999999988876654444444433321 122356666666553 223334
Q ss_pred HHHHHHHHHhcCCCCC
Q 042615 85 EQLLEIFRAFDRDGNG 100 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G 100 (160)
..+.+.|..++.-.++
T Consensus 554 d~v~~~~~~f~diad~ 569 (612)
T COG5069 554 DLVTRGFTEFDDIADA 569 (612)
T ss_pred hhhhhhHHHHHHhhhh
Confidence 5566666666543343
No 200
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=58.77 E-value=43 Score=23.78 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=26.9
Q ss_pred CCCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 97 DGNGYITAAELAGSMAKM--GQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 97 ~~~G~i~~~e~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
.-||.|+..|.. ..+.+ ...++.++.....+.+........++.+|+..+..
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 446777777764 22221 12244555444444444444445666666666654
No 201
>PRK04387 hypothetical protein; Provisional
Probab=58.76 E-value=23 Score=20.60 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHHH
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLG-LKPSGDQIHVLLANMDANGNGAVEFDE 67 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~e 67 (160)
-+.+++..+...|+.........|..++|....+.+. +-++..+-.++.+.+.. .+|.-.|.-
T Consensus 11 WsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe~-~SGYS~Y~~ 74 (90)
T PRK04387 11 WSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEK-VSGYSIYRA 74 (90)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCCcHHHH
Confidence 4677888888888888776677889999888877653 45777777788887743 346555443
No 202
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=58.11 E-value=43 Score=26.08 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=46.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh---cc----CC-CcceeHHHHHHHHhh
Q 042615 90 IFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA---DT----NG-DGVISFNEFAAVMAK 149 (160)
Q Consensus 90 ~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~---d~----~~-~g~i~~~ef~~~l~~ 149 (160)
+|..+-..+++.++.--|..+|++.|+..++..+..++..+ +. +. -+.++.+-|.+++-.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 67777555569999999999999999988888888876665 31 22 357899999888754
No 203
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=57.91 E-value=38 Score=20.14 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC---CCCceeHHHHHHHh
Q 042615 8 QLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDAN---GNGAVEFDELVNAI 72 (160)
Q Consensus 8 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~ 72 (160)
.+..+...|..+.. +|.|+..+|..++ |..-+.+....+|.++-.- ....|+-+|+..+.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW 90 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFW 90 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHH
Confidence 35566666777655 6677777776654 5556666666666555221 12456555554443
No 204
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=57.11 E-value=35 Score=19.43 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
.+++.+++..++.+|..+=.. ..+.++-.+.+.... ....++..+..-+
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~---~~~~~~a~~~l~~~~--~~~~~v~~~~~Fi 74 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRS---GLTLEEALEELEEEY--PDSPEVREIVDFI 74 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTS---SS-HHHHHHHHHHHT--TSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHhc--cCCHHHHHHHHHH
Confidence 468899999999999986333 256666655555421 1244555555444
No 205
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=56.93 E-value=33 Score=22.81 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHH
Q 042615 21 MDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFD 66 (160)
Q Consensus 21 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 66 (160)
-+.+|+++.+++...++.-+...+.+++.++... |..++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~---d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES---DDKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc---CCCcceEec
Confidence 3679999999999988765667899999888664 345565554
No 206
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=56.24 E-value=34 Score=19.35 Aligned_cols=43 Identities=23% Similarity=0.396 Sum_probs=31.0
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHhhccCC-CcceeHHHHHHHH
Q 042615 103 TAAELAGSMAKMGQPLTYKELTEMIKEADTNG-DGVISFNEFAAVM 147 (160)
Q Consensus 103 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l 147 (160)
..+++...+. |.+.+.+.+...+...+.+. -+.++.+|+++++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666664 55678888888888886654 3678888888765
No 207
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=55.43 E-value=25 Score=23.47 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=18.2
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 042615 95 DRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKE 129 (160)
Q Consensus 95 D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 129 (160)
..+.+|.|.++|+...+..-+..++.+++.++...
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 35667777777777777665555666666666554
No 208
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=55.39 E-value=46 Score=20.30 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=38.8
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q 042615 14 DIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVN 70 (160)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 70 (160)
..|..+-.-++..++.+++..+|...|.......+..+.+.+. ..+.++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3444554556667999999999999999999999998888882 245566654
No 209
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=55.29 E-value=29 Score=23.17 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 042615 21 MDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMD 56 (160)
Q Consensus 21 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (160)
.+.+|+++.+++.+.+..-+..++.+++.++....+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 467899999999998887677788999999887554
No 210
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=53.54 E-value=40 Score=24.88 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHH
Q 042615 99 NGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAV 146 (160)
Q Consensus 99 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 146 (160)
.|.||++|-...++.......++.+..+++.++ ||-+||.++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 466666666666666443444566666666663 555555554
No 211
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.37 E-value=79 Score=22.46 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=44.6
Q ss_pred HHHHHHHHhhh-cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 9 LNQLRDIFARF-DMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 9 ~~~l~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
...+...|..+ |+.-+..|..+-+.++...+|+.+.+-.+--+--.+....-+..+.++|+.-+
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~ 127 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGM 127 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 34456666664 44444688999999999999988876665555555655556778888888754
No 212
>PRK01844 hypothetical protein; Provisional
Probab=53.23 E-value=38 Score=18.78 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
+-.|+.+-++....+.|.++|+..+.++++..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44789999999999999999999999998876
No 213
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=53.06 E-value=1.1e+02 Score=24.19 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhcC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccc
Q 042615 6 IDQLNQLRDIFARFDM-DSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDM 76 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 76 (160)
++.+.-|.+.|...-- -.|-.|+.+.+.++-.-+|..++++..+.+-..+..-+.|.|+-++...-++..+
T Consensus 85 ~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l 156 (529)
T PRK06253 85 PEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISKAL 156 (529)
T ss_pred HHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhc
Confidence 3444455666666433 4577889998888766689999999877777777777788898888877765443
No 214
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=52.97 E-value=35 Score=22.69 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=16.9
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 042615 96 RDGNGYITAAELAGSMAKMGQPLTYKELTEMI 127 (160)
Q Consensus 96 ~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~ 127 (160)
.+.+|.+.++++...++..+..++.+.+.++.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV 59 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVV 59 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHH
Confidence 34556666666666555433344555554444
No 215
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=52.31 E-value=1.1e+02 Score=24.02 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhhc-CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccch
Q 042615 6 IDQLNQLRDIFARFD-MDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMD 77 (160)
Q Consensus 6 ~~~~~~l~~~f~~~d-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 77 (160)
++.+.-|.+.|...- +-.|-.|+.+.+.++-. +|..++++..+.+-..+..-+.|.|+-++...-++..+.
T Consensus 85 ~ea~avldrcfyl~glprp~vgis~~~~~~i~~-~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~ 156 (533)
T TIGR00470 85 PEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIEN-LGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALN 156 (533)
T ss_pred HHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHH-hCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhC
Confidence 344445566666643 34577889999888755 999999888888777776667888988888777654443
No 216
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=52.21 E-value=72 Score=21.60 Aligned_cols=81 Identities=11% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHH-HHHHHHhcCCCCCHHHHHHHHHhhccCCCc
Q 042615 58 NGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAE-LAGSMAKMGQPLTYKELTEMIKEADTNGDG 136 (160)
Q Consensus 58 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g 136 (160)
+=||.|+.+++...+...... ..+..+++. --++.+|..| |-.++..++.+. ++.+.-+.+.+..+.
T Consensus 9 DFDGTITl~Ds~~~itdtf~~------~e~k~l~~~---vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp-- 76 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGP------GEWKALKDG---VLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP-- 76 (220)
T ss_pred cCCCceEecchhHHHHhccCc------hHHHHHHHH---HhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc--
Confidence 345677777766655332211 122223222 2345566544 445555555333 222333333233332
Q ss_pred ceeHHHHHHHHhhcCC
Q 042615 137 VISFNEFAAVMAKSTL 152 (160)
Q Consensus 137 ~i~~~ef~~~l~~~~~ 152 (160)
.+.||.++..++-.
T Consensus 77 --~fKef~e~ike~di 90 (220)
T COG4359 77 --GFKEFVEWIKEHDI 90 (220)
T ss_pred --cHHHHHHHHHHcCC
Confidence 25666666666543
No 217
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=52.19 E-value=68 Score=21.32 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHHHhhcCCCCC--ceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC
Q 042615 49 HVLLANMDANGNG--AVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQP 117 (160)
Q Consensus 49 ~~~~~~~d~~~~g--~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~ 117 (160)
..+|..+-. ..| .++.+.|+..+....+............+=..+-+...-.||..||..++..+|..
T Consensus 22 i~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP~ 91 (181)
T PF11422_consen 22 ISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGPE 91 (181)
T ss_dssp HHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSSG
T ss_pred HHHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCCc
Confidence 344555533 345 77888887776554433222222333333444444556789999999999998853
No 218
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=51.82 E-value=80 Score=26.23 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
.+..++.+||+.++|.|.+-+|+..+..+.....++-...+|......+...+ ...|.-+|.
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~ 532 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLH 532 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHH
Confidence 45668999999999999999999888776554455666689988865554433 444444333
No 219
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.80 E-value=36 Score=19.50 Aligned_cols=61 Identities=11% Similarity=0.244 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHH
Q 042615 5 HIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLG-LKPSGDQIHVLLANMDANGNGAVEFD 66 (160)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ 66 (160)
+.+++..+...|+.....-.+.++.++|....+.+. +-++..+-.++++.+.. .+|.-.|.
T Consensus 12 sTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~FE~-~SgyS~Y~ 73 (90)
T COG4476 12 STEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDFEK-SSGYSLYQ 73 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHHHH-hcCccHHH
Confidence 567777888888888777778899999988776543 45667777788877743 34544443
No 220
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=50.28 E-value=1.2e+02 Score=24.47 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCCCcccCCCC
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTLDFFGLGLS 160 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 160 (160)
++.+-++.+..+...+|+..+--++...-...-++.++.++..=-.|-==.|-++.|.+.+...|..-++.+.|
T Consensus 507 irHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMdIKFQNIVVEILIEnyeKIF~t~Pd~S~~~pvP 580 (812)
T KOG1451|consen 507 IRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMDIKFQNIVVEILIENYEKIFKTKPDSSFGSPVP 580 (812)
T ss_pred HHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHcchhhhhhHHHHHhhhHHHhcCCCCccCCCCCC
Confidence 34456677777777888877766665544344556666665444344444577888999999988877777655
No 221
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=50.14 E-value=1.1e+02 Score=23.96 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLG 40 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 40 (160)
+|++.|-.-+.-+|+.+|.++=-.|+.+|++.+|.-++
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 46777777889999999999888999999999887553
No 222
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=50.06 E-value=27 Score=16.02 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHhcCCC
Q 042615 101 YITAAELAGSMAKMGQP 117 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~ 117 (160)
.++..+++..++..|.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 56777888888877764
No 223
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=49.75 E-value=20 Score=19.95 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=6.2
Q ss_pred CCceeHHHHHHHh
Q 042615 60 NGAVEFDELVNAI 72 (160)
Q Consensus 60 ~g~i~~~ef~~~~ 72 (160)
.|++.-+||...+
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 4555555554443
No 224
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=48.69 E-value=48 Score=19.25 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCCCCceeHH
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLG-LKPSGDQIHVLLANMDANGNGAVEFD 66 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ 66 (160)
-+.+++..+...|+.....-.+.++.++|....+.+. +-++..+=.++.+.+.. .+|.-.|.
T Consensus 11 WsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~-~SGYs~Y~ 73 (88)
T PF05256_consen 11 WSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEE-QSGYSIYR 73 (88)
T ss_dssp --HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHC-CSS--HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HhCCcHHH
Confidence 4667788888888877776677788888887776543 45677777778877743 34554444
No 225
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.61 E-value=70 Score=20.46 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHH--HcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHH
Q 042615 14 DIFARFDMDSDGSLTILELAALLR--SLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIF 91 (160)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f 91 (160)
-.|+...- ||.++..|...+.. .-.+..+.+++..+......-+...+++-.|...+...+.... ..+-+..+|
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~--R~eli~~mw 109 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQ--RLELIGLMW 109 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 45555543 55677666544322 2346778888888888877767778888899888764433221 124455567
Q ss_pred HHhcCCCCCcccHHHHHHHHHh
Q 042615 92 RAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 92 ~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
+.. ..||.++.-|-.-+++.
T Consensus 110 eIa--~ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 110 EIA--YADGELDESEDHVIWRV 129 (148)
T ss_pred HHH--HccccccHHHHHHHHHH
Confidence 766 56677887776555544
No 226
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=47.83 E-value=70 Score=20.21 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=38.4
Q ss_pred CCCcccHHHHHHHHHhcCC---------CCCHHHHHHHHHhhccCCCc-ceeHHHHHHH
Q 042615 98 GNGYITAAELAGSMAKMGQ---------PLTYKELTEMIKEADTNGDG-VISFNEFAAV 146 (160)
Q Consensus 98 ~~G~i~~~e~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 146 (160)
|+-.||.+||...+..... .++.+++.++.+.+...+.+ .+++.|.++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 6678999999999876421 37889999999999876665 4998887764
No 227
>PF13551 HTH_29: Winged helix-turn helix
Probab=47.29 E-value=57 Score=19.04 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHH-H-HcCCCCCHHHHHHHHHh
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAALL-R-SLGLKPSGDQIHVLLAN 54 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~-~~~~~~~~~~~~~~~~~ 54 (160)
+++++...+.+.+...-.++.+..+...+...+ . ..+..++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 566666666666665433322356666776643 2 34566666666666554
No 228
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=47.24 E-value=48 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCC
Q 042615 2 GGLHIDQLNQLRDIFARFDMDS 23 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~ 23 (160)
++||++++..|......+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 5688888888888888888764
No 229
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=47.04 E-value=26 Score=16.14 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=11.8
Q ss_pred cccHHHHHHHHHhcCCC
Q 042615 101 YITAAELAGSMAKMGQP 117 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~ 117 (160)
.++..|++..++..|.+
T Consensus 3 ~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 3 KLTVAELKEELKERGLS 19 (35)
T ss_dssp TSHHHHHHHHHHHTTS-
T ss_pred cCcHHHHHHHHHHCCCC
Confidence 46677788888777764
No 230
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=46.98 E-value=38 Score=26.09 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcC
Q 042615 8 QLNQLRDIFARFDMDSDGSLTILELAALLRSLG 40 (160)
Q Consensus 8 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 40 (160)
+...+..+| .+.....+..+.+||.+.+...+
T Consensus 287 ~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 287 EEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 344555666 55555667788888888887543
No 231
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=46.97 E-value=1.3e+02 Score=23.18 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 9 LNQLRDIFARFDMDSDGSLTILELAALLRS-LGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
.+.++.+-+.+|.+.+|.|+.+|--.+++. +.+.-+...-.. .+.. .|..|+.++.....
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~fH~-dD~~ItVedLWeaW 127 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KFHG-DDKHITVEDLWEAW 127 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hccC-CccceeHHHHHHHH
Confidence 466888899999999999999998888874 444433222111 3323 45678888776654
No 232
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.14 E-value=51 Score=25.01 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=27.2
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHH
Q 042615 13 RDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELV 69 (160)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 69 (160)
.++|..+.+ -+|+|+-..-+.-+ +...+....+..+|+..|.+++|.++-+||.
T Consensus 447 de~fy~l~p-~~gk~sg~~ak~~m--v~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 447 DEIFYTLSP-VNGKLSGRNAKKEM--VKSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred Hhhhhcccc-cCceeccchhHHHH--HhccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 344554422 25555544443332 1233444555666666666666666666663
No 233
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=45.37 E-value=57 Score=18.50 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=26.5
Q ss_pred cCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 114 MGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 114 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
-|-.+.++..+.+-+.+...+...|+++|++.+....
T Consensus 42 RgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 42 RGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3555666666666666666677779999999887653
No 234
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=45.33 E-value=10 Score=23.91 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=22.5
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCC
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTL 152 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 152 (160)
.||.+|++.++..+...+. +.+....=.+.+..|+++-+..+|...|.
T Consensus 9 ~vTldevr~Av~~f~~~lp----~gi~rt~lv~~d~~iD~~~L~~yL~g~p~ 56 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFEEDLP----KGINRTILVNDDQSIDFERLAPYLGGIPD 56 (140)
T ss_pred cccHHHHHHHHHHHHHhCc----cCCceEEEEcCCceecHHHHhhhcCCCCC
Confidence 3555555555555332221 11222222345556666666666555443
No 235
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=45.32 E-value=69 Score=19.41 Aligned_cols=54 Identities=15% Similarity=0.372 Sum_probs=40.3
Q ss_pred HHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 14 DIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
..|..+-..++..++.+++..+|...|.......+..+.+.+. | .+..+.+..-
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~----G-Kdi~eLIa~g 58 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE----G-KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc----C-CCHHHHHHHh
Confidence 3444554556778999999999999999999888888888872 2 5666666643
No 236
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=45.23 E-value=92 Score=21.87 Aligned_cols=70 Identities=9% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcc
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILP 74 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 74 (160)
.+|++.+.+.+-+-|...=.+..|.+-..|.--++..-....+..+.+.-.... +...|-|.+|+..+..
T Consensus 12 q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 81 (257)
T PRK14074 12 QGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDI---KESLIAYSDFLEDLTK 81 (257)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHH---HHHHHHHHHHHHHHHH
Confidence 468899999999999888788889999888887776555567766655433322 2346788888877643
No 237
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=44.20 E-value=29 Score=23.20 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMI 127 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~ 127 (160)
..+.++.+|-.||+++--..+.+++..++...|+--+..-+..++
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 347899999999999999999999999999888754444444433
No 238
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=43.81 E-value=24 Score=20.99 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHH---HHHHhhccCCCcceeHHHHHHHHhhcCCC
Q 042615 100 GYITAAELAGSMAKMGQPLTYKELT---EMIKEADTNGDGVISFNEFAAVMAKSTLD 153 (160)
Q Consensus 100 G~i~~~e~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 153 (160)
-.+|.+++..++...|. .+.+. ..++.++.+....++-++....+.++|.-
T Consensus 34 ~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~L 87 (105)
T cd03035 34 DGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSL 87 (105)
T ss_pred CCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCe
Confidence 45778888888877662 12221 23444443322457888888888888743
No 239
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=42.86 E-value=90 Score=24.39 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~ 114 (160)
.+.-+|+..|.++==.|+..||+.++...
T Consensus 129 vL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 129 VLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred HHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 34445666655555555666665555443
No 240
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.67 E-value=46 Score=16.61 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCccc-HHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 98 GNGYIT-AAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 98 ~~G~i~-~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
+.|.|+ ..++.+.+...|.-++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346665 555566666678888888887777654
No 241
>COG5562 Phage envelope protein [General function prediction only]
Probab=41.69 E-value=27 Score=22.01 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHhhccCCCcceeHHHHHHHHhhc
Q 042615 125 EMIKEADTNGDGVISFNEFAAVMAKS 150 (160)
Q Consensus 125 ~~~~~~d~~~~g~i~~~ef~~~l~~~ 150 (160)
.+......+..|..+|+||+.-+.+.
T Consensus 76 ~i~~al~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 76 LIKTALRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHhC
Confidence 34555566788999999999988764
No 242
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=41.37 E-value=79 Score=18.99 Aligned_cols=43 Identities=7% Similarity=0.145 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 102 ITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 102 i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
+|.+++..++...|..+....+..+++.+. ..++++++.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 999999999999999999999988888872 2456666655443
No 243
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.11 E-value=75 Score=24.19 Aligned_cols=57 Identities=30% Similarity=0.364 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHH
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAA 145 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 145 (160)
....+|..+. .-+|+|+-..-+..+-... +...-+-++++..|.|.+|-++-+||.-
T Consensus 445 ~yde~fy~l~-p~~gk~sg~~ak~~mv~sk--lpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLS-PVNGKLSGRNAKKEMVKSK--LPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhccc-ccCceeccchhHHHHHhcc--CchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4667787774 4568888877766665544 6678889999999999999999999963
No 244
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=40.92 E-value=57 Score=17.18 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHH
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFD 66 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 66 (160)
|++..-..|+.+|.... ..+.+...++.+.|. .+...+..+++.+.. .|.|.++
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~--~GlV~~~ 55 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE--KGLVEYE 55 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH--TTSEEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH--CCCEEec
Confidence 56677778888888875 677899999988763 566677777777743 3555543
No 245
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=40.84 E-value=95 Score=23.06 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCCcccHHHHHHHHHHcCCCCC----------HHHHHHHHHhhcCC
Q 042615 22 DSDGSLTILELAALLRSLGLKPS----------GDQIHVLLANMDAN 58 (160)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~~~~~~d~~ 58 (160)
+..+.++..+...+|..++.+.. ..++..++..+...
T Consensus 137 ~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 183 (342)
T cd07894 137 NTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKE 183 (342)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHC
Confidence 44567888998888887765322 24566666666544
No 246
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=39.99 E-value=1.2e+02 Score=20.54 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=12.4
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHH
Q 042615 13 RDIFARFDMDSDGSLTILELAALLRS 38 (160)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~ 38 (160)
......+++.+...=..+++.+.|..
T Consensus 125 L~~It~y~P~~~~f~vseNIVk~LNK 150 (194)
T PF07199_consen 125 LKHITNYDPKNPIFAVSENIVKKLNK 150 (194)
T ss_pred HHHHHccCCCCcchhhHHHHHHHHcC
Confidence 33334444444444455555555543
No 247
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=39.56 E-value=52 Score=16.33 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.0
Q ss_pred cHHHHHHHHHhcCCCCCHHHH
Q 042615 103 TAAELAGSMAKMGQPLTYKEL 123 (160)
Q Consensus 103 ~~~e~~~~~~~~~~~~~~~~~ 123 (160)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888888888887765
No 248
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=38.86 E-value=89 Score=18.86 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHH
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAA 145 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 145 (160)
.||.+++..++...|..+.+..+..+...+. .++.++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 8999999999999999999888888888872 245555543
No 249
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=38.72 E-value=1.8e+02 Score=22.29 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=40.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCC---
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNG--- 100 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G--- 100 (160)
...++...|..+|.......+--+..++-..+|...++.|+.=||=.+. ........+.+-|+.+-...-|
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFT------RLFqPw~tllkNWq~LavtHPGYmA 261 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFT------RLFQPWKTLLKNWQTLAVTHPGYMA 261 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHH------HhhccHHHHHHhhhhhhccCCceeE
Confidence 3455666666666654332232333444444566666666544442222 1111123444444444333333
Q ss_pred cccHHHHHHHHHhc
Q 042615 101 YITAAELAGSMAKM 114 (160)
Q Consensus 101 ~i~~~e~~~~~~~~ 114 (160)
++|++|++.-++.+
T Consensus 262 FLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 262 FLTYDEVKARLQKY 275 (563)
T ss_pred EeeHHHHHHHHHHH
Confidence 46677766666553
No 250
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=38.33 E-value=94 Score=18.98 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=37.1
Q ss_pred HHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q 042615 15 IFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVN 70 (160)
Q Consensus 15 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 70 (160)
.|..+--.++..++.+++..+|...|.......+..+.+.+. | .+..+.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~----g-K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK----G-KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc----C-CCHHHHHH
Confidence 344444455667999999999999998888888888888872 2 45666654
No 251
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=37.90 E-value=59 Score=16.53 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCC
Q 042615 99 NGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNG 134 (160)
Q Consensus 99 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (160)
.|.|+..+++..+. .+-..+-.+++.+|..+
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhccC
Confidence 67888888888764 56666667777776543
No 252
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=37.56 E-value=67 Score=17.05 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHH
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAALLRS 38 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 38 (160)
++.++|..+.+.| .-++ +...++.++++.+|..
T Consensus 12 l~l~RIh~mLkmf-~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMF-PKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH--GGG---TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-cCCC-CCCCCCHHHHHHHHHH
Confidence 4444555555555 2222 3445666777766653
No 253
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=37.22 E-value=91 Score=18.46 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCC---CceeHHHHHHHh
Q 042615 27 LTILELAALLRSLGLKPSGDQIHVLLANMDANGN---GAVEFDELVNAI 72 (160)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~---g~i~~~ef~~~~ 72 (160)
++..+..-+|.-+...++++++..+...+-..+. ..++...++..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v 68 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRV 68 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 7777887777777788888888888777744333 344444454444
No 254
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=36.75 E-value=68 Score=16.93 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCC
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGL 41 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~ 41 (160)
+.++.+++..+...|...-- .--..+..+..++...+|+
T Consensus 6 T~Ft~~Q~~~Le~~fe~~~y-~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKLGW-KLKDKRREEVREFCEEIGV 44 (58)
T ss_pred CCCCHHHHHHHHHHHHHcCC-CCCCCCHHHHHHHHHHhCC
Confidence 46788888888888877411 0011666666666666654
No 255
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=36.69 E-value=37 Score=19.87 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=18.1
Q ss_pred CCcceeHHHHHHHHhhcCCCccc
Q 042615 134 GDGVISFNEFAAVMAKSTLDFFG 156 (160)
Q Consensus 134 ~~g~i~~~ef~~~l~~~~~~~~~ 156 (160)
+-..|+|++|++.-.++...+.|
T Consensus 73 ~i~~IdY~~FV~Lt~~h~~~i~W 95 (95)
T PRK13510 73 SIILISYTDFVRLTVKHSQQMAW 95 (95)
T ss_pred CceEECHHHHHHHHHhcCCcccC
Confidence 44579999999999988766553
No 256
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=35.78 E-value=90 Score=17.99 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 27 LTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
|+.+++.++.+-....++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46778888777677788888877776555
No 257
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.43 E-value=46 Score=22.17 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIK 128 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 128 (160)
..+.++++|..||+..-...+.+++..++...++--+..-+..++.
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~ 96 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIA 96 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHH
Confidence 4478999999999999999999999999988776545444444433
No 258
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=35.23 E-value=1.9e+02 Score=21.63 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CC---------
Q 042615 48 IHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMG-QP--------- 117 (160)
Q Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~-~~--------- 117 (160)
+..++.++|+.+.|+++.----..+... ....-.+.++-+|... .+..|.+..-.+.+++...- .+
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatl---c~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~psf 187 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATL---CGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSF 187 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhh---ccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCCCc
Confidence 4445677888888887533222222222 1222246788899988 57778888888887776631 11
Q ss_pred -CCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 118 -LTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 118 -~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
.++..+...| -++.+++++.|++-+...+
T Consensus 188 g~te~~a~~cf-----~qqrKv~Ln~fldtl~sdp 217 (434)
T KOG4301|consen 188 GYTELSARLCF-----LQQRKVELNQFLDTLMSDP 217 (434)
T ss_pred chHHHHHHHHH-----HHHHHHHHHHHHHHHhcCC
Confidence 2222222222 2456788888888887765
No 259
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=35.17 E-value=39 Score=21.82 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=6.0
Q ss_pred CcceeHHHHHHHH
Q 042615 135 DGVISFNEFAAVM 147 (160)
Q Consensus 135 ~g~i~~~ef~~~l 147 (160)
-+.++|++|.+.|
T Consensus 71 ~~~~tf~~fkkal 83 (180)
T KOG4070|consen 71 ARTITFEEFKKAL 83 (180)
T ss_pred cccccHHHHHHHH
Confidence 3445555553333
No 260
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=35.09 E-value=49 Score=15.02 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=6.7
Q ss_pred CcccHHHHHHHHH
Q 042615 100 GYITAAELAGSMA 112 (160)
Q Consensus 100 G~i~~~e~~~~~~ 112 (160)
|.|+.+++..+..
T Consensus 3 ~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 3 GTISKEEYLDMAS 15 (33)
T ss_pred ceecHHHHHHHHH
Confidence 4555555554443
No 261
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.83 E-value=1.3e+02 Score=19.37 Aligned_cols=58 Identities=17% Similarity=0.394 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCCcccHHHH---HHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 89 EIFRAFDRDGNGYITAAEL---AGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
-+|.+.. .||.++..|. +.+++. .+.++..++..++.....-+.-.+++..|..-+..
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566663 4466666663 333333 23366777777777776666667777777776664
No 262
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=34.56 E-value=98 Score=18.07 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=4.2
Q ss_pred cCCCCCHHHHHHHHH
Q 042615 114 MGQPLTYKELTEMIK 128 (160)
Q Consensus 114 ~~~~~~~~~~~~~~~ 128 (160)
-|..++.+++..++.
T Consensus 21 rGi~v~~~~L~~f~~ 35 (90)
T PF02337_consen 21 RGIRVKKKDLINFLS 35 (90)
T ss_dssp CT----HHHHHHHHH
T ss_pred cCeeecHHHHHHHHH
Confidence 333333333333333
No 263
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=34.08 E-value=92 Score=17.60 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=34.4
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHH-HHHhhccCC------CcceeHHHHHHHHhhcC
Q 042615 103 TAAELAGSMAKMGQPLTYKELTE-MIKEADTNG------DGVISFNEFAAVMAKST 151 (160)
Q Consensus 103 ~~~e~~~~~~~~~~~~~~~~~~~-~~~~~d~~~------~g~i~~~ef~~~l~~~~ 151 (160)
-.-++.+++.+.|.+.+..++.. +.+.|+.+. -..++.++++.+|.+.-
T Consensus 3 HgHeVL~mml~~~~~~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 3 HGHEVLNLMLASGEPYTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 34567778877788888777655 556665552 23589999999998763
No 264
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=33.88 E-value=1.5e+02 Score=22.47 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=35.6
Q ss_pred CCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 042615 60 NGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAK 113 (160)
Q Consensus 60 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~ 113 (160)
+-.++++++.......- .....+.+..++...+.+++|.....++.+++..
T Consensus 72 ~~~~~l~k~~~~~~~~~---~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~ 122 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYE---KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVV 122 (427)
T ss_pred CccchHHHHhhHHhhhc---cCcccHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 34688888766543321 1222356777899999999999999998777755
No 265
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=33.57 E-value=71 Score=16.13 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHH
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHV 50 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 50 (160)
..+++.++..|...|.. +..++.++...+...+| ++...|..
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~ 46 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKN 46 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc--cccccccc
Confidence 35778888888888885 44577777777666664 44444443
No 266
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=32.18 E-value=1.3e+02 Score=18.72 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHHc-CCCCCHHHHHHHHHh
Q 042615 27 LTILELAALLRSL-GLKPSGDQIHVLLAN 54 (160)
Q Consensus 27 i~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 54 (160)
|+.+.+..++... |..+|..++..++.+
T Consensus 51 id~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 51 IDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred CCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 4444444444332 133444444444333
No 267
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=32.08 E-value=43 Score=17.13 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=12.7
Q ss_pred HHHHhcCCCCCcccHHHHHHHHH
Q 042615 90 IFRAFDRDGNGYITAAELAGSMA 112 (160)
Q Consensus 90 ~f~~~D~~~~G~i~~~e~~~~~~ 112 (160)
+|..+...++|.+|..|+...+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 44455444456777777665544
No 268
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=31.63 E-value=1.2e+02 Score=18.33 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH
Q 042615 104 AAELAGSMAKMGQPLTYKELTEMIK 128 (160)
Q Consensus 104 ~~e~~~~~~~~~~~~~~~~~~~~~~ 128 (160)
.+|++.++-.....++++++++++.
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd 105 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3344444444333344444444443
No 269
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=31.25 E-value=45 Score=17.73 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.5
Q ss_pred hhcCCCCCcccHHHHHH
Q 042615 18 RFDMDSDGSLTILELAA 34 (160)
Q Consensus 18 ~~d~~~~g~i~~~e~~~ 34 (160)
.++.+++|+|+...+..
T Consensus 23 ~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 23 QMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHCTTTTTBEEHHHHTT
T ss_pred HHHhcCCCcEeHHHHHc
Confidence 34444555555555433
No 270
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=30.65 E-value=2.3e+02 Score=21.49 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=20.2
Q ss_pred HhhhcCCCCCcccHHHHHHHHHHcCCC
Q 042615 16 FARFDMDSDGSLTILELAALLRSLGLK 42 (160)
Q Consensus 16 f~~~d~~~~g~i~~~e~~~~l~~~~~~ 42 (160)
|..+|.+.+..++.++-..++...+.+
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp 189 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLP 189 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCC
Confidence 344455668899999999988877765
No 271
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=30.61 E-value=3.2e+02 Score=23.43 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=58.0
Q ss_pred HHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH-----HHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHH
Q 042615 13 RDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVL-----LANMDANGNGAVEFDELVNAILPDMDETILINQEQL 87 (160)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~-----~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (160)
++.|... ..+.+.+++++|..+.+.+........+... ...-+...-..|.+.+|..++...-...-......+
T Consensus 184 ~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av 262 (1267)
T KOG1264|consen 184 KEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAV 262 (1267)
T ss_pred HHHHhHh-hhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHH
Confidence 3444443 4467889999999887766554443333222 222222333578999999998655444434333444
Q ss_pred HHHHHHhcCC-----CCCcccHHHHHHHHHh
Q 042615 88 LEIFRAFDRD-----GNGYITAAELAGSMAK 113 (160)
Q Consensus 88 ~~~f~~~D~~-----~~G~i~~~e~~~~~~~ 113 (160)
+..-+.|-.| ..-.+++.||..++-.
T Consensus 263 ~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 263 REFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred HHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 4444444222 2347888898888744
No 272
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=30.60 E-value=45 Score=22.37 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIK 128 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 128 (160)
..+.++.+|..||++.--..+.+++..++...++--+..-+..++.
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 3478999999999999889999999999988776444444444433
No 273
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=30.27 E-value=1.1e+02 Score=17.34 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHH-HHHhhccCC------CcceeHHHHHHHHhhcC
Q 042615 102 ITAAELAGSMAKMGQPLTYKELTE-MIKEADTNG------DGVISFNEFAAVMAKST 151 (160)
Q Consensus 102 i~~~e~~~~~~~~~~~~~~~~~~~-~~~~~d~~~------~g~i~~~ef~~~l~~~~ 151 (160)
|-..|+.+++.+.|.+.+..++.+ +.+.|+.+. -..++.++++.+|.+.-
T Consensus 4 iHgHeVL~mmi~~~~~~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 4 IHGHEVLNMMIESGNPYTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred cHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 445677777777777777777644 566676652 34589999999988753
No 274
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=30.03 E-value=64 Score=14.52 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=5.0
Q ss_pred eeHHHHHHHHh
Q 042615 138 ISFNEFAAVMA 148 (160)
Q Consensus 138 i~~~ef~~~l~ 148 (160)
|+.++|..|+.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555554
No 275
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=29.92 E-value=2.3e+02 Score=21.03 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=52.8
Q ss_pred HHcCCCCCHHHHHHHHHhhc--CCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 042615 37 RSLGLKPSGDQIHVLLANMD--ANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~ 114 (160)
..+.+....+++++++..+- .|+.-.+-=++|-....+. .......-+.-+-+.+-.+=+|++-..|+..-++..
T Consensus 32 ~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l---~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~ 108 (351)
T CHL00185 32 ANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNL---DEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK 108 (351)
T ss_pred HhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhC---CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC
Confidence 34577778888888887773 3444445445554433221 111112334445566666778888888888776542
Q ss_pred CCCCCHHHHHHHHHhhccCC
Q 042615 115 GQPLTYKELTEMIKEADTNG 134 (160)
Q Consensus 115 ~~~~~~~~~~~~~~~~d~~~ 134 (160)
...+.++|..+..|.
T Consensus 109 -----nP~lae~F~lMaRDE 123 (351)
T CHL00185 109 -----NPLLAEGFLLMSRDE 123 (351)
T ss_pred -----CcHHHHHHHHHhhhh
Confidence 245667777776654
No 276
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=29.73 E-value=3.2e+02 Score=22.57 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=14.2
Q ss_pred CHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 119 TYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 119 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
.++.+..+.+.. ..|.++.++...++..
T Consensus 671 ~~~~l~~~~~~~---~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 671 DPENLKELCREG---QLGRFSPEEIYEFIQR 698 (710)
T ss_pred cHHHHHHHHhhc---cccCCCHHHHHHHHHH
Confidence 344444444333 2266666666666653
No 277
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=29.67 E-value=2.4e+02 Score=21.05 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=53.2
Q ss_pred HHcCCCCCHHHHHHHHHhhc--CCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 042615 37 RSLGLKPSGDQIHVLLANMD--ANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~ 114 (160)
..+.+....+++++++..+- .|+.-.+-=++|-....+. .......-+.-+-+.+-.+=+|++-..|+..-++..
T Consensus 36 ~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l---~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~ 112 (355)
T PRK13654 36 AKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHL---DPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR 112 (355)
T ss_pred HhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhC---CHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc
Confidence 34577777888888887773 3444444445554433221 111112334445566666778888888888766532
Q ss_pred CCCCCHHHHHHHHHhhccCC
Q 042615 115 GQPLTYKELTEMIKEADTNG 134 (160)
Q Consensus 115 ~~~~~~~~~~~~~~~~d~~~ 134 (160)
...+.++|..+..|.
T Consensus 113 -----nP~lae~F~lMaRDE 127 (355)
T PRK13654 113 -----NPLLAELFQLMARDE 127 (355)
T ss_pred -----CcHHHHHHHHHhhhH
Confidence 356677777776654
No 278
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.70 E-value=1.6e+02 Score=18.63 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=20.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
++.++.+++...+..-+..++...+.+.+..+
T Consensus 31 ~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 31 NHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred CCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 45677777777776666556666665555554
No 279
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=28.38 E-value=1.1e+02 Score=16.74 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHhh
Q 042615 85 EQLLEIFRAFDRDGNGYITAAELAGSMAKM----GQPLTYKELTEMIKEA 130 (160)
Q Consensus 85 ~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~----~~~~~~~~~~~~~~~~ 130 (160)
..+..+....+....--+-..+++.++..+ |...+++.+..+|..|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 345555555554433445566677776653 6666777777777543
No 280
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=28.36 E-value=1.3e+02 Score=17.67 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=21.9
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
.|+.+++.++.+-....+++++...+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 477788888777777778888877666555
No 281
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=28.16 E-value=1.7e+02 Score=20.67 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcccHHHHHH
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSLTILELAA 34 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~ 34 (160)
||=.+++.++.++..++.+ +|.++..++.+
T Consensus 177 LSySEleAv~~IL~~L~~~-egrlse~eLAe 206 (251)
T TIGR02787 177 LSYSELEAVEHIFEELDGN-EGLLVASKIAD 206 (251)
T ss_pred ccHhHHHHHHHHHHHhccc-cccccHHHHHH
Confidence 3334444455555554332 34455444433
No 282
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.05 E-value=2.5e+02 Score=21.25 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhccc
Q 042615 25 GSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPD 75 (160)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 75 (160)
..++.++|...|.. +-...+..+..|-..-+.=-.-++-|.||+..+...
T Consensus 6 ~~~~LeeLe~kLa~-~d~~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I 55 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDNSKDSVMDKISEAQDSILPLRLQFNEFIQTMANI 55 (379)
T ss_pred CCCcHHHHHHHHhc-CCchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 45777888777762 333223333333333332233466788888877543
No 283
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=28.02 E-value=2.6e+02 Score=22.31 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccC
Q 042615 87 LLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTN 133 (160)
Q Consensus 87 ~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~ 133 (160)
...+.-..+..+.|.++.+|..++|..+++.-..-++.++++++..+
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 33455566777888899999999999988766666677777777554
No 284
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=27.96 E-value=1.3e+02 Score=17.35 Aligned_cols=30 Identities=20% Similarity=0.126 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
.|+.++++.+.+-....++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367788888877777778888876665544
No 285
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=27.88 E-value=45 Score=18.43 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=18.7
Q ss_pred CcceeHHHHHHHHhhcCCCcccCCCC
Q 042615 135 DGVISFNEFAAVMAKSTLDFFGLGLS 160 (160)
Q Consensus 135 ~g~i~~~ef~~~l~~~~~~~~~~~~~ 160 (160)
+|.|..++..++|.+.+. ..++.+|
T Consensus 37 EGHVPa~~I~~lL~e~P~-~~GlavP 61 (70)
T PF04214_consen 37 EGHVPADDIKRLLAEKPD-ARGLAVP 61 (70)
T ss_pred EccCCHHHHHHHHhcCCC-ceEEeCC
Confidence 577888888888888776 6666554
No 286
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=27.85 E-value=2.5e+02 Score=20.74 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=52.1
Q ss_pred HHcCCCCCHHHHHHHHHhhcC--CCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 042615 37 RSLGLKPSGDQIHVLLANMDA--NGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~ 114 (160)
..+.+....+++++++..+-. |+.-.+-=++|-...... .......-+.-+-+.+-.+=+|++-..|+..-++.
T Consensus 26 ~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l---~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~- 101 (337)
T TIGR02029 26 ANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHI---DGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN- 101 (337)
T ss_pred HhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhC---CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC-
Confidence 345677778888888877733 443344444554422211 11111233444556666677888888888766554
Q ss_pred CCCCCHHHHHHHHHhhccCC
Q 042615 115 GQPLTYKELTEMIKEADTNG 134 (160)
Q Consensus 115 ~~~~~~~~~~~~~~~~d~~~ 134 (160)
....+.++|..+..|.
T Consensus 102 ----~~P~lae~F~~MaRDE 117 (337)
T TIGR02029 102 ----RDPVVAELFQLMARDE 117 (337)
T ss_pred ----CChHHHHHHHHHhhhh
Confidence 3355677777776664
No 287
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD. This family consists of a pilus biogenesis protein, CpaD, from Caulobacter, and homologs in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function is not known.
Probab=27.67 E-value=1.7e+02 Score=19.86 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCccc-----------HHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCC--ceeHHHH
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLT-----------ILELAALLRSLGLKPSGDQIHVLLANMDANGNG--AVEFDEL 68 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~-----------~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g--~i~~~ef 68 (160)
++|+..+..+|..++..+-..+.|.|. ..+++..|...|+.... +...+...+....+ +|.|.-+
T Consensus 53 ~~Lt~~qr~~l~~f~~~~~~~g~~~i~i~~psgaa~~~~~~ir~~L~~~Gv~~~~--~~~~~~~~~~~~~a~irl~~~~~ 130 (198)
T TIGR02522 53 RGLSASQQDQLLGFLKDWGRASAQTLTLIIPSAAAEAMAGEIRRVLAASGVGARN--VKVMYRATASGDTGPIRVSYVAY 130 (198)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCceEEEecChhHHHHHHHHHHHHHHHcCCChhc--ceeecccCCCCCCCCEEEEEEEE
Confidence 469999999999999999888777765 34667777777777664 33333333333323 3454444
No 288
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=27.48 E-value=1.1e+02 Score=16.33 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=11.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcC
Q 042615 89 EIFRAFDRDGNGYITAAELAGSMAKMG 115 (160)
Q Consensus 89 ~~f~~~D~~~~G~i~~~e~~~~~~~~~ 115 (160)
.+++.++.+...-++.+|...-....|
T Consensus 8 ~v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 8 EVLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 334444433333344444444444444
No 289
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=26.64 E-value=1e+02 Score=15.84 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042615 5 HIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLA 53 (160)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 53 (160)
+..+..+........ -.+|.|+.+||..-+.....--+..++..++.
T Consensus 4 sd~dR~~~~~~L~~a--~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 4 SDADRERAVDLLRAA--FAEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred cHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 334444444443332 15789999999887766555566666666553
No 290
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=26.51 E-value=2e+02 Score=22.48 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHhhhcC--------CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 4 LHIDQLNQLRDIFARFDM--------DSDGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~--------~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
+++.+.+-+++-|..+.. .....++.++++++.+-....+++++.+.+...+
T Consensus 358 ~~e~~~~~~~~~~s~l~s~~m~~~~~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 358 LSETQTKGIKKSFSDLQSPLFPKHWTSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred HHHHhhhhhhhhhhhhcChhhhhhhccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 344555555555554432 2345788888888877777888888888876655
No 291
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=26.35 E-value=40 Score=27.33 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHH---------HHHHHHhhccCCC---------------------
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKE---------LTEMIKEADTNGD--------------------- 135 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~d~~~~--------------------- 135 (160)
...+++..+|.+.++..+..++.....+++..+.... ...++..+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 3456777888888888888887776666554322222 3446667777776
Q ss_pred --cceeHHHHHHHHh
Q 042615 136 --GVISFNEFAAVMA 148 (160)
Q Consensus 136 --g~i~~~ef~~~l~ 148 (160)
|.++.+|.+.++.
T Consensus 518 s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 518 SFGVVTVDELVALLA 532 (975)
T ss_pred ccCeeEHHHHHHHHH
Confidence 8999999999887
No 292
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=26.18 E-value=19 Score=16.20 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=9.6
Q ss_pred HHHHhhccCCCcceeHH
Q 042615 125 EMIKEADTNGDGVISFN 141 (160)
Q Consensus 125 ~~~~~~d~~~~g~i~~~ 141 (160)
.++++-|.|++-.|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 34555566666666554
No 293
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=26.10 E-value=99 Score=15.47 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLL 52 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 52 (160)
..+++.++..|...|.. +...+.++...+...+| ++...|..-|
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF 48 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWF 48 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHH
Confidence 34677778888888877 44677777777766655 4444554433
No 294
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=26.08 E-value=1.2e+02 Score=16.22 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=7.3
Q ss_pred CcccHHHHHHHHHhcC
Q 042615 100 GYITAAELAGSMAKMG 115 (160)
Q Consensus 100 G~i~~~e~~~~~~~~~ 115 (160)
+.++...+++++...|
T Consensus 43 ~~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 43 RKVDPSKLKEWLDSQG 58 (64)
T ss_pred ceeCHHHHHHHHHHCC
Confidence 3444444444444443
No 295
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.94 E-value=2.1e+02 Score=23.45 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=52.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHh-----hhHHHHHHHHHHhcCCC
Q 042615 24 DGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETIL-----INQEQLLEIFRAFDRDG 98 (160)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-----~~~~~~~~~f~~~D~~~ 98 (160)
++ ++.+++. +.....+..++.++..+|. ++|.++-+++...+......... ...+-...+++..|.+.
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 44 6777776 3344556667777777776 67777777776665332222111 11123344688888888
Q ss_pred CCcccHHHHHHHHHh
Q 042615 99 NGYITAAELAGSMAK 113 (160)
Q Consensus 99 ~G~i~~~e~~~~~~~ 113 (160)
.|.+..+++..++..
T Consensus 75 ~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQ 89 (646)
T ss_pred cceeeecchhHHHHh
Confidence 888888888877765
No 296
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=25.92 E-value=2.7e+02 Score=23.26 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcC
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 151 (160)
....+|+..-+.+.-.+..+++..+ +.+++.+..+..++...+..|++..|.+...+..
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~ 463 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIY 463 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHH
Confidence 4556788887777667777776655 5678888888888876666699999998876643
No 297
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.87 E-value=1.7e+02 Score=17.99 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=20.3
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 103 TAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 103 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
|..|++.++...+..++.+++++++...
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 5667787777777777777777776554
No 298
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=25.82 E-value=2.3e+02 Score=19.48 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=6.8
Q ss_pred HHHHHHHHHcCCC
Q 042615 30 LELAALLRSLGLK 42 (160)
Q Consensus 30 ~e~~~~l~~~~~~ 42 (160)
.+|...+..+|+.
T Consensus 61 ~~f~~~~~~lGvd 73 (223)
T PF04157_consen 61 SQFQSMCASLGVD 73 (223)
T ss_dssp HHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCC
Confidence 3666666666654
No 299
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.75 E-value=2.2e+02 Score=19.31 Aligned_cols=29 Identities=3% Similarity=0.119 Sum_probs=15.9
Q ss_pred CHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 44 SGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 44 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
..+...-+.+.+..|+.|.|+....+...
T Consensus 117 ~~~l~~lV~~af~~dk~G~l~~~rIl~Lr 145 (195)
T PF11363_consen 117 DPELRALVNRAFQVDKEGNLNTSRILGLR 145 (195)
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 33334444555556666666666655554
No 300
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=25.71 E-value=1.2e+02 Score=16.14 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 042615 26 SLTILELAALLRSLGLKPSGDQIHVL 51 (160)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 51 (160)
..+.+++..+.+..|+..+.+++...
T Consensus 24 ~~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 24 AEDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35688999999999999999988764
No 301
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=25.68 E-value=1.3e+02 Score=19.41 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcccHHHHHHHHH
Q 042615 7 DQLNQLRDIFARFDMDSDGSLTILELAALLR 37 (160)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~ 37 (160)
..+..+.+.....|.++.++||..+++.++-
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy 96 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVY 96 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHH
Confidence 3456667777777777777788888887653
No 302
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=1.6e+02 Score=18.43 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=22.9
Q ss_pred CceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCc
Q 042615 61 GAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGY 101 (160)
Q Consensus 61 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~ 101 (160)
|.|+++|=...+...-......-...+..+|+.-|+.+-|.
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 55777777776643322121222345666777777775553
No 303
>PF11907 DUF3427: Domain of unknown function (DUF3427); InterPro: IPR021835 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 243 to 275 amino acids in length. This domain is found associated with PF04851 from PFAM, PF00271 from PFAM.
Probab=24.82 E-value=2.6e+02 Score=19.93 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhc
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMD 56 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (160)
+..+-++.-|+.++ .++.++.+++...+...+...+++.++.+.+.+.
T Consensus 10 gkR~~ElliL~~Ll------~~~~is~~~~~~~l~~~~~~~~~~~~~s~~~~L~ 57 (274)
T PF11907_consen 10 GKRPHELLILKELL------KNSSISIEDFREILKENHIDIDEETLKSALRMLS 57 (274)
T ss_pred CCCHHHHHHHHHHH------hcCCcCHHHHHHHHHHcCccccHHHHHHHHHHHH
Confidence 34455555555555 4668999999999998777777777777666653
No 304
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=24.81 E-value=1.8e+02 Score=17.92 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=25.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 23 SDGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
..|.++.+++..-+..-+..++.+++..+++.+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 467889999977666557778888888887766
No 305
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=24.58 E-value=1e+02 Score=17.65 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=15.9
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCCC
Q 042615 90 IFRAFDRDGNGYITAAELAGSMAKMGQP 117 (160)
Q Consensus 90 ~f~~~D~~~~G~i~~~e~~~~~~~~~~~ 117 (160)
+.+.++.+.+|.|+.+-+..+=+--...
T Consensus 28 L~~~~~~~~dG~Vpl~~i~~F~rmk~lt 55 (82)
T cd08032 28 LREQIEKSRDGYIDISLLVSFNKMKKLT 55 (82)
T ss_pred HHHHhcCCCCCCEeHHHHhcchHHHHHc
Confidence 4555666677777776655444333333
No 306
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=24.42 E-value=2.5e+02 Score=20.78 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=39.4
Q ss_pred HHHHHHH--HcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHH
Q 042615 31 ELAALLR--SLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELA 108 (160)
Q Consensus 31 e~~~~l~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~ 108 (160)
.|...+. .+|+...........+ .|.++.+|=+..+...-. ....+.+..+++.++ ||.+||.
T Consensus 275 ~~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~---~~~~~~~~~~~~~lg------~t~~ef~ 339 (343)
T TIGR03573 275 IFHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEYDG---EFPKEDLEYFLKYLG------ISEEEFW 339 (343)
T ss_pred HHHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhcc---cccHHHHHHHHHHhC------CCHHHHH
Confidence 3544443 4666544444444333 588888888887766322 222367777888884 6777776
Q ss_pred HHH
Q 042615 109 GSM 111 (160)
Q Consensus 109 ~~~ 111 (160)
.++
T Consensus 340 ~~~ 342 (343)
T TIGR03573 340 KTV 342 (343)
T ss_pred HHh
Confidence 654
No 307
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=24.27 E-value=44 Score=22.24 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
..+.++.+|..||++.-..++.+++..++..-++--+..-+..++..+
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNA 94 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 347899999999999988999999999988877655555555554443
No 308
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=24.11 E-value=1.8e+02 Score=17.68 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=38.4
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhh
Q 042615 91 FRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAK 149 (160)
Q Consensus 91 f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 149 (160)
+..+..-+. .|+.+.++.++...|..+.+..++.+...+. | ++++|.+.-...
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe----g-~~idE~i~~~~~ 59 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE----G-VDIDEVIKNAAE 59 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc----C-CCHHHHHHHhcc
Confidence 334433333 8999999999999999998888888887773 2 467776655444
No 309
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=23.74 E-value=1.6e+02 Score=17.14 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHH---HHHHhhccCCCcceeHHHHHHHHhhcCCC
Q 042615 99 NGYITAAELAGSMAKMGQPLTYKELT---EMIKEADTNGDGVISFNEFAAVMAKSTLD 153 (160)
Q Consensus 99 ~G~i~~~e~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 153 (160)
....+.+++..++...+.+. .+.+. ..++..+......++-+++.+++.++|.-
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~-~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~L 89 (105)
T cd02977 33 KEPPTKEELKELLAKLGLGV-EDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKL 89 (105)
T ss_pred cCCCCHHHHHHHHHhcCCCH-HHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCe
Confidence 34577888888887776331 12222 24445544434678999999999988754
No 310
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.73 E-value=3.4e+02 Score=20.87 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeH
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISF 140 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 140 (160)
.....|+.. -...-.|.+..|++.+.......+--+.-.+-..+|...++.|+.
T Consensus 176 dA~~FWr~~-fg~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~ 229 (563)
T KOG1785|consen 176 DAAEFWRKH-FGKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISN 229 (563)
T ss_pred cHHHHHHHh-cCCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceee
Confidence 344455555 233456788888888776543333344444555556666666653
No 311
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.27 E-value=59 Score=15.21 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=10.2
Q ss_pred cccHHHHHHHHHhcCCC
Q 042615 101 YITAAELAGSMAKMGQP 117 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~ 117 (160)
.+++.+++.++...|+.
T Consensus 3 sltV~~Lk~iL~~~~I~ 19 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIE 19 (35)
T ss_dssp T--SHHHHHHHHHHT--
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46778888888887664
No 312
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=23.13 E-value=2.2e+02 Score=19.82 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=31.1
Q ss_pred cHHHHHHHH----HhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHh
Q 042615 103 TAAELAGSM----AKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMA 148 (160)
Q Consensus 103 ~~~e~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 148 (160)
+.++++.++ ...++.+++.++..+...+..=.+-.+++.+|.+-+.
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666655554 3357778888888877777665666677777776654
No 313
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=22.98 E-value=2.1e+02 Score=18.01 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCC
Q 042615 86 QLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNG 134 (160)
Q Consensus 86 ~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (160)
-+..+-+-+...+-..-+.+.=+.+|+.-| ++++||++++.......
T Consensus 5 li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 5 LIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 344444444444445566777778888877 88899999998886554
No 314
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=22.97 E-value=98 Score=20.29 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 83 NQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 83 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
....+..++.-+-..+...++.++|...|. .|..++++++......+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 345666666666545556788888876654 47778888888876655
No 315
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.83 E-value=72 Score=15.48 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=13.7
Q ss_pred cCCCCCcccHHHHHHHHHhc
Q 042615 95 DRDGNGYITAAELAGSMAKM 114 (160)
Q Consensus 95 D~~~~G~i~~~e~~~~~~~~ 114 (160)
+....|-++.++++..+..-
T Consensus 7 ~g~~~GP~s~~el~~l~~~g 26 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISSG 26 (45)
T ss_pred CCeEECCcCHHHHHHHHHcC
Confidence 34456778888888777653
No 316
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=22.61 E-value=2.9e+02 Score=19.53 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 042615 2 GGLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANM 55 (160)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (160)
.+++++++..+++.|+.+=.. .++.++-.+.+... .....+++.+..-+
T Consensus 198 ~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~f~ 246 (255)
T PRK12461 198 RGFSSRAIRALKRAYKIIYRS---GLSVQQAVAELELQ--QFESPEVEELIDFI 246 (255)
T ss_pred cCCCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHh--ccCCHHHHHHHHHH
Confidence 357888899999888886322 34555544444432 12234455555544
No 317
>PRK03968 DNA primase large subunit; Validated
Probab=22.60 E-value=3.5e+02 Score=20.57 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHh
Q 042615 22 DSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGAVEFDELVNAI 72 (160)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 72 (160)
...+.++.++...+-+..+..+..++...+... .+|.|.+|+...
T Consensus 117 ~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~------y~i~~~df~~l~ 161 (399)
T PRK03968 117 VNAIEIPEKDRKILERVRGRELPPEELEDLLPE------YKIKWKDLLDLI 161 (399)
T ss_pred cccccccchhhhhhhhhcccccCHHHHHHHhhh------ccccHHHHHHhc
Confidence 345556666666666666666777776665443 346666666644
No 318
>PRK10945 gene expression modulator; Provisional
Probab=22.55 E-value=1.5e+02 Score=16.42 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHhh
Q 042615 42 KPSGDQIHVLLANM 55 (160)
Q Consensus 42 ~~~~~~~~~~~~~~ 55 (160)
..+.+.++.++...
T Consensus 18 css~eTLEkvie~~ 31 (72)
T PRK10945 18 CQTIDTLERVIEKN 31 (72)
T ss_pred cCcHHHHHHHHHHh
Confidence 34555555555443
No 319
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=22.44 E-value=2.2e+02 Score=18.16 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhcC----CCCCceeH
Q 042615 23 SDGSLTILELAALLRSLGLKPSGDQIHVLLANMDA----NGNGAVEF 65 (160)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----~~~g~i~~ 65 (160)
.+...+-+|+...|+..|...+...+.+.++.+.. +++|..-|
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elglvk~~~~~g~~~Y 59 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELGAVKVRDEDGSYVY 59 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCEEEECCCCcEEE
Confidence 35578999999999999999999999998887754 34554433
No 320
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=22.40 E-value=1.9e+02 Score=17.45 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=4.6
Q ss_pred eeHHHHHHHHh
Q 042615 138 ISFNEFAAVMA 148 (160)
Q Consensus 138 i~~~ef~~~l~ 148 (160)
++|++|.+.+.
T Consensus 99 ~s~~~~r~~ir 109 (118)
T PF09312_consen 99 ISYEEYREQIR 109 (118)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555555444
No 321
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.37 E-value=2.4e+02 Score=18.64 Aligned_cols=39 Identities=10% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCcccHHHHHHHHHHcCCC
Q 042615 3 GLHIDQLNQLRDIFARFDMDSDGSLTILELAALLRSLGLK 42 (160)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~ 42 (160)
+++++--.++.++|..+-. +++-+..+++-.++..+..+
T Consensus 7 ki~~EiEDEILe~Ya~~~~-~~~D~~l~~Lp~~f~~L~IP 45 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTE-DEQDMTLKDLPNYFEDLQIP 45 (170)
T ss_pred cCChHHHHHHHHHHHHhcC-CccceeHHHHHHHHHHcCCC
Confidence 4677777888999999844 36779999999999988765
No 322
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.21 E-value=2.3e+02 Score=22.33 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhcc--CCCcceeHHHHHHHHhhcC
Q 042615 106 ELAGSMAKMGQPLTYKELTEMIKEADT--NGDGVISFNEFAAVMAKST 151 (160)
Q Consensus 106 e~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~l~~~~ 151 (160)
-++..++.+|+.++++++..+++.+-. +....++-+|+..++.+..
T Consensus 322 ~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 322 ALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 356777888999998888888777643 3445799999988887643
No 323
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=22.01 E-value=1.7e+02 Score=17.18 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=8.3
Q ss_pred CCceeHHHHHHHh
Q 042615 60 NGAVEFDELVNAI 72 (160)
Q Consensus 60 ~g~i~~~ef~~~~ 72 (160)
+|.|+-+||...+
T Consensus 37 ~~~i~~EeF~~~L 49 (92)
T smart00549 37 NGTITAEEFTSRL 49 (92)
T ss_pred hCCCCHHHHHHHH
Confidence 4666666666655
No 324
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=21.96 E-value=1.9e+02 Score=17.35 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHH
Q 042615 101 YITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVM 147 (160)
Q Consensus 101 ~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 147 (160)
.||.+++..++...|..+....+..+...+.. .+.++.+.-.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g-----k~i~eli~~~ 57 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALEG-----VNIEEAIKKA 57 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhh
Confidence 89999999999999998888888888888732 4555555433
No 325
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=21.80 E-value=2.5e+02 Score=18.68 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.1
Q ss_pred CCCCCcccHHHHHHHHHhcCCC
Q 042615 96 RDGNGYITAAELAGSMAKMGQP 117 (160)
Q Consensus 96 ~~~~G~i~~~e~~~~~~~~~~~ 117 (160)
.||+|.+.+-=+..++...|.+
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 4788888887777777777753
No 326
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.55 E-value=1.7e+02 Score=16.52 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=32.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhhccCCCcceeHHHHHHHHhhcCC
Q 042615 98 GNGYITAAELAGSMAKMGQPLTYKELTEMIKEADTNGDGVISFNEFAAVMAKSTL 152 (160)
Q Consensus 98 ~~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 152 (160)
+.|.|+.++...+... +.+.+...+++.... ..|...+.-|.+.|.+..+
T Consensus 26 ~~~Vit~e~~~~I~a~---~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e~~p 75 (82)
T cd08330 26 GKKVITQEQYSEVRAE---KTNQEKMRKLFSFVR--SWGASCKDIFYQILREEEP 75 (82)
T ss_pred HCCCCCHHHHHHHHcC---CCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCh
Confidence 4577888776655442 244566666776663 3567788888888875543
No 327
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=21.27 E-value=2e+02 Score=17.20 Aligned_cols=32 Identities=16% Similarity=-0.019 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 042615 99 NGYITAAELAGSMAKMGQPLTYKELTEMIKEA 130 (160)
Q Consensus 99 ~G~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 130 (160)
.-.+|.+++..++...|.......+..+.+.+
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 34799999999999999988777777676666
No 328
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=21.17 E-value=1.6e+02 Score=16.22 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHhh
Q 042615 43 PSGDQIHVLLANM 55 (160)
Q Consensus 43 ~~~~~~~~~~~~~ 55 (160)
.+.+.++.++...
T Consensus 14 ss~eTLEkv~e~~ 26 (71)
T PRK10391 14 SSLESLEKLFDHL 26 (71)
T ss_pred CcHHHHHHHHHHh
Confidence 3344444444433
No 329
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=20.55 E-value=1.9e+02 Score=16.66 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhhcCCCCCcee---HHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC
Q 042615 42 KPSGDQIHVLLANMDANGNGAVE---FDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQP 117 (160)
Q Consensus 42 ~~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~~ 117 (160)
.++...+.++.+... -.+|+ |++....+..++. +-+..+-......+.-.|+.+|+..+++..|.+
T Consensus 13 gi~k~~I~RLarr~G---vkRIS~d~y~e~~~~l~~~l~-------~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRGG---VKRISGGVYDEVRNVLKSYLE-------DVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 355556666655442 33444 5555444422211 223333333334556679999999999988854
No 330
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=20.52 E-value=3.7e+02 Score=20.07 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=50.2
Q ss_pred cCCCCCHHHHHHHHHhhc--CCCCCceeHHHHHHHhcccchhhHhhhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 042615 39 LGLKPSGDQIHVLLANMD--ANGNGAVEFDELVNAILPDMDETILINQEQLLEIFRAFDRDGNGYITAAELAGSMAKMGQ 116 (160)
Q Consensus 39 ~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~~~~~~~ 116 (160)
+......+++++++..+- .|+.-.+-=++|-...... .......-+.-+-+.+-.+-+|++-..|+..-++.
T Consensus 34 id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l---~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~--- 107 (357)
T PLN02508 34 INKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKI---QGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK--- 107 (357)
T ss_pred CCCchhHHHHHHHHHHHHhCccccccccChhhccchhhC---CHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc---
Confidence 356667777777777763 3444444444554332221 11111233444556666777888888888766543
Q ss_pred CCCHHHHHHHHHhhccCC
Q 042615 117 PLTYKELTEMIKEADTNG 134 (160)
Q Consensus 117 ~~~~~~~~~~~~~~d~~~ 134 (160)
....+.++|..+..|.
T Consensus 108 --~nP~lae~F~lMaRDE 123 (357)
T PLN02508 108 --TNPVVAEIFTLMSRDE 123 (357)
T ss_pred --CChHHHHHHHHhCchh
Confidence 2356677777776664
No 331
>PHA02773 hypothetical protein; Provisional
Probab=20.46 E-value=1.3e+02 Score=17.52 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCcc
Q 042615 4 LHIDQLNQLRDIFARFDMDSDGSL 27 (160)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i 27 (160)
|.+.+.+-+.+.|.....+.+|-+
T Consensus 21 lr~kqkell~rffeiae~de~gdl 44 (112)
T PHA02773 21 LRPKQKELLIRFFEIAEKDEDGDL 44 (112)
T ss_pred echhhHHHHHHHHHHheecCCCCE
Confidence 556677777777777666555543
No 332
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=20.39 E-value=1.4e+02 Score=19.30 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=3.4
Q ss_pred ccHHHHH
Q 042615 102 ITAAELA 108 (160)
Q Consensus 102 i~~~e~~ 108 (160)
|+.+++.
T Consensus 114 i~eEEL~ 120 (156)
T KOG0871|consen 114 IPEEELL 120 (156)
T ss_pred CCHHHHH
Confidence 4555543
No 333
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=20.06 E-value=1.5e+02 Score=17.90 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=27.8
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHH---HHHHHhhccCCCcceeHHHHHHHHhhcCC
Q 042615 100 GYITAAELAGSMAKMGQPLTYKEL---TEMIKEADTNGDGVISFNEFAAVMAKSTL 152 (160)
Q Consensus 100 G~i~~~e~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 152 (160)
-.+|.+++..++...|. ...+ ...++..+.+. ..++-++....+.++|.
T Consensus 35 ~p~s~~eL~~~l~~~g~---~~l~n~~~~~~r~~~~~~-~~ls~~e~~~ll~~~P~ 86 (113)
T cd03033 35 EPWTAETLRPFFGDLPV---AEWFNPAAPRVKSGEVVP-EALDEEEALALMIADPL 86 (113)
T ss_pred CCCCHHHHHHHHHHcCH---HHHHhcccHHHHhcCCCc-cCCCHHHHHHHHHhCcc
Confidence 35777777777776652 1111 12333332222 35677888888888764
Done!