BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042616
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0R|A Chain A, Structure Of The Phyr Stress Response Regulator At 1.25
Angstrom Resolution
Length = 286
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 48 CSSIAVSRTLALVAAARQTGGRVVCILSGVIGD--IDASKKSLGRYANCIEFVKGDAQKL 105
+ IA +R AL A R+T G V+ + G IDA K LGR + F+ ++L
Sbjct: 187 VTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRXDVPVIFITAFPERL 246
Query: 106 LMGDYRGADFVL 117
L G+ F++
Sbjct: 247 LTGERPEPTFLI 258
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 109 DYRGADFVL--IDCNIDIDGHKNVFRAAKESVMHGS 142
DYR D+ + ID D+D K V A ++V HG+
Sbjct: 33 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGA 68
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 109 DYRGADFVL--IDCNIDIDGHKNVFRAAKESVMHGS 142
DYR D+ + ID D+D K V A ++V HG+
Sbjct: 33 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGA 68
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 109 DYRGADFVL--IDCNIDIDGHKNVFRAAKESVMHGS 142
DYR D+ + ID D+D K V A ++V HG+
Sbjct: 12 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGA 47
>pdb|1M6P|A Chain A, Extracytoplasmic Domain Of Bovine Cation-Dependent Mannose
6-Phosphate Receptor
pdb|1M6P|B Chain B, Extracytoplasmic Domain Of Bovine Cation-Dependent Mannose
6-Phosphate Receptor
pdb|1C39|A Chain A, Structure Of Cation-dependent Mannose 6-phosphate Receptor
Bound To Pentamannosyl Phosphate
pdb|1C39|B Chain B, Structure Of Cation-dependent Mannose 6-phosphate Receptor
Bound To Pentamannosyl Phosphate
Length = 152
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 125 DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEG----LLVTRIGEN 180
D + VFR +E+ H SGAG++ + K + G + + I +G +L+ + G+
Sbjct: 41 DMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVG-RFNETQIFQGSNWIMLIYKGGDE 99
Query: 181 SDVGGGRKRSRWVVTV 196
D GR++ R VV +
Sbjct: 100 YDNHCGREQRRAVVMI 115
>pdb|3K42|A Chain A, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 7.0
pdb|3K42|B Chain B, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 7.0
pdb|3K43|A Chain A, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 6.5
pdb|3K43|B Chain B, Crystal Structure Of Scd-Mpr Mutant E19qK137M PH 6.5
Length = 154
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 125 DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEG----LLVTRIGEN 180
D + VFR +E+ H SGAG++ + K + G + + I +G +L+ + G+
Sbjct: 43 DMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVG-RFNETQIFQGSNWIMLIYKGGDE 101
Query: 181 SDVGGGRKRSRWVVTV 196
D GR++ R VV +
Sbjct: 102 YDNHCGREQRRAVVMI 117
>pdb|3K41|A Chain A, Crystal Structure Of Scd-Mpr Mutant E19qK137M BOUND TO
MAN-6-P
pdb|3K41|B Chain B, Crystal Structure Of Scd-Mpr Mutant E19qK137M BOUND TO
MAN-6-P
Length = 160
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 125 DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEG----LLVTRIGEN 180
D + VFR +E+ H SGAG++ + K + G + + I +G +L+ + G+
Sbjct: 43 DMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVG-RFNETQIFQGSNWIMLIYKGGDE 101
Query: 181 SDVGGGRKRSRWVVTV 196
D GR++ R VV +
Sbjct: 102 YDNHCGREQRRAVVMI 117
>pdb|1KEO|A Chain A, Twists And Turns Of The Cd-Mpr: Ligand-Bound Versus
Ligand-Free Receptor
pdb|1KEO|B Chain B, Twists And Turns Of The Cd-Mpr: Ligand-Bound Versus
Ligand-Free Receptor
pdb|2RL7|A Chain A, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL7|B Chain B, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL7|C Chain C, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL7|D Chain D, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 4.8
pdb|2RL8|A Chain A, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To M6p
pdb|2RL8|B Chain B, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To M6p
pdb|2RL9|A Chain A, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To Trimannoside
pdb|2RL9|B Chain B, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 6.5 Bound To Trimannoside
pdb|2RLB|A Chain A, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 6.5 Bound To M6p In Absence Of Mn
pdb|2RLB|B Chain B, Crystal Structure Cation-dependent Mannose 6-phosphate
Receptor At Ph 6.5 Bound To M6p In Absence Of Mn
pdb|3CY4|A Chain A, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 7.4
pdb|3CY4|B Chain B, Crystal Structure Cation-Dependent Mannose 6-Phosphate
Receptor At Ph 7.4
Length = 154
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 125 DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEG----LLVTRIGEN 180
D + VFR +E+ H SGAG++ + K + G + + I +G +L+ + G+
Sbjct: 43 DMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVG-RFNETQIFQGSNWIMLIYKGGDE 101
Query: 181 SDVGGGRKRSRWVVTV 196
D GR++ R VV +
Sbjct: 102 YDNHCGREQRRAVVMI 117
>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|3UKO|B Chain B, Crystal Structure Of S-Nitrosoglutathione Reductase From
Arabidopsis Thaliana, Complex With Nadh
pdb|4GL4|A Chain A, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
pdb|4GL4|B Chain B, Crystal Structure Of Oxidized S-nitrosoglutathione
Reductase From Arabidopsis Thalina, Complex With Nadh
Length = 378
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 26/146 (17%)
Query: 57 LALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG-----DAQKLLMGDY 110
LA+ A+ G S +IG DID+ K + EFV Q++++
Sbjct: 207 LAVAEGAKTAGA------SRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLT 260
Query: 111 RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGE 170
G +D + + G+ +V RAA E G G VIVG A G + P
Sbjct: 261 DGG----VDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA------SGQEISTRPF-- 308
Query: 171 GLLVTRIGENSDVGGGRKRSR--WVV 194
L+ R+ + + GG + R++ W+V
Sbjct: 309 QLVTGRVWKGTAFGGFKSRTQVPWLV 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,599,960
Number of Sequences: 62578
Number of extensions: 267134
Number of successful extensions: 553
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 11
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)