BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042616
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04825|AMPN_ECOLI Aminopeptidase N OS=Escherichia coli (strain K12) GN=pepN PE=1 SV=2
Length = 870
Score = 32.0 bits (71), Expect = 3.8, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 109 DYRGADFVL--IDCNIDIDGHKNVFRAAKESVMHGS 142
DYR D+ + ID D+D K V A ++V HG+
Sbjct: 12 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGA 47
>sp|Q54TC2|ADHX_DICDI Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5
PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 68 GRVVCILSGVIG-DIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI-----DCN 121
G V C +IG D + +K G+ C EF+ ++ L G V I D +
Sbjct: 212 GAVDCGAKRIIGIDNNETKFGPGKDFGCTEFIN-PSKDLPEGKTIQQHLVDITDGGVDYS 270
Query: 122 IDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG---SWRGYKTHFLPIGEGLLVTRIG 178
+ G+ NV RAA E G G IVG P G S R ++ L+ R+
Sbjct: 271 FECIGNVNVMRAALECCHKGWGVSTIVG--VAPAGAEISTRPFQ---------LVTGRVW 319
Query: 179 ENSDVGGGRKRSRWVVTVDK 198
+ S GG + RS+ +DK
Sbjct: 320 KGSAFGGVKSRSQLPSIIDK 339
>sp|P81431|ADHX_OCTVU Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1
Length = 378
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 26/128 (20%)
Query: 33 SALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRY 91
+A+ G+N + + +AV+ AAR +IG DI+ SK +G+
Sbjct: 189 AAVEKGSNCAVWGLGAVGLAVAMGCKAAGAAR------------IIGIDINESKFEIGKK 236
Query: 92 ANCIEFVKG-----DAQKLL--MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA 144
EFV QK+L M D G DF + G+ V RAA ES G G
Sbjct: 237 FGITEFVNPKKFCKSVQKVLGEMTDV-GVDFTF-----ECIGNVGVMRAALESCHKGWGT 290
Query: 145 GVIVGYNA 152
VIVG A
Sbjct: 291 SVIVGVAA 298
>sp|Q88D17|UBIE_PSEPK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain KT2440) GN=ubiE PE=3 SV=1
Length = 256
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 77 VIGDIDASKKSLGR-------YANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKN 129
V+ DI+ S +GR A IEFV+ DA+KL D D V I + HK+
Sbjct: 97 VLADINDSMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPD-NHFDCVTIAFGLRNVTHKD 155
Query: 130 VFRAAKESVMHGSGAGVIVGY----NALPKGSWRGYKTHFLPIGEGLLVTRIGEN 180
+ V+ G +I+ + N L ++ Y F+P+ G L+T E+
Sbjct: 156 AAIRSMLRVLKPGGRLLILEFSKPTNKLMSKAYDAYSFAFMPLA-GKLITNDAES 209
>sp|A5WA45|UBIE_PSEP1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ubiE
PE=3 SV=1
Length = 256
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 77 VIGDIDASKKSLGR-------YANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKN 129
V+ DI+ S +GR A IEFV+ DA+KL D D V I + HK+
Sbjct: 97 VLADINDSMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPD-NHFDCVTIAFGLRNVTHKD 155
Query: 130 VFRAAKESVMHGSGAGVIVGY----NALPKGSWRGYKTHFLPIGEGLLVTRIGEN 180
+ V+ G +I+ + N L ++ Y F+P+ G L+T E+
Sbjct: 156 AAIRSMLRVLKPGGRLLILEFSKPTNKLMSKAYDAYSFAFMPLA-GKLITNDAES 209
>sp|B9W9N8|VPS10_CANDC Vacuolar protein sorting/targeting protein 10 OS=Candida
dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 /
NCPF 3949 / NRRL Y-17841) GN=VPS10 PE=3 SV=1
Length = 1571
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 77 VIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNID-----IDGHKNVF 131
+IG ID S+KS Y ++F K GD +FV NID I GH+ F
Sbjct: 532 IIGGIDDSRKSENEYIYSVDFTNAFDGKTC-GDDDFEEFVARKSNIDDEPLCIYGHREKF 590
Query: 132 RAAKE 136
R K+
Sbjct: 591 RRRKQ 595
>sp|Q1RFI7|FRMA_ECOUT S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
(strain UTI89 / UPEC) GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFELARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|Q0TKS7|FRMA_ECOL5 S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFELARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|A1A835|FRMA_ECOK1 S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
O1:K1 / APEC GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFELARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|Q8FKG1|FRMA_ECOL6 S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=frmA PE=3
SV=1
Length = 369
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFELARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|Q3Z550|FRMA_SHISS S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei
(strain Ss046) GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFDLARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|B1J085|FRMA_ECOLC S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFDLARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|A7ZX04|FRMA_ECOHS S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
O9:H4 (strain HS) GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFDLARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|Q8X5J4|FRMA_ECO57 S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
O157:H7 GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFDLARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|A7ZIA4|FRMA_ECO24 S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFDLARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|B1LIP1|FRMA_ECOSM S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFDLARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGL 172
+ ID + G+ NV RAA ES G G VI+G GS + T L
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGV----AGSGQEISTRPF----QL 303
Query: 173 LVTRIGENSDVGGGRKRSR 191
+ R+ + S GG + RS+
Sbjct: 304 VTGRVWKGSAFGGVKGRSQ 322
>sp|P25437|FRMA_ECOLI S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli
(strain K12) GN=frmA PE=1 SV=3
Length = 369
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 57 LALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRG 112
LA+V ARQ GR++ I D + K L R +CI D K +
Sbjct: 200 LAVVQGARQAKAGRIIAI------DTNPKKFDLARRFGATDCIN--PNDYDKPIKDVLLD 251
Query: 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149
+ ID + G+ NV RAA ES G G VI+G
Sbjct: 252 INKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIG 288
>sp|B1YI68|SYP_EXIS2 Proline--tRNA ligase OS=Exiguobacterium sibiricum (strain DSM 17290
/ JCM 13490 / 255-15) GN=proS PE=3 SV=1
Length = 566
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 15 QALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV 60
Q K+G R E G + L G AQ ++M C I VSRT++ V
Sbjct: 407 QVFKLGTRYSE---GMNATFLDEGGKAQPLIMGCYGIGVSRTMSAV 449
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,134,833
Number of Sequences: 539616
Number of extensions: 3414201
Number of successful extensions: 8015
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 8015
Number of HSP's gapped (non-prelim): 24
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)