Query 042616
Match_columns 220
No_of_seqs 183 out of 1284
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07279 DUF1442: Protein of u 100.0 3.1E-57 6.7E-62 380.0 20.1 198 3-208 4-218 (218)
2 PF01596 Methyltransf_3: O-met 100.0 5E-37 1.1E-41 259.3 14.2 150 21-178 26-205 (205)
3 PLN02589 caffeoyl-CoA O-methyl 100.0 9.9E-35 2.2E-39 251.5 19.3 149 22-178 61-246 (247)
4 COG4122 Predicted O-methyltran 100.0 9.6E-35 2.1E-39 246.8 18.2 149 22-178 41-218 (219)
5 PLN02476 O-methyltransferase 100.0 4.2E-34 9.1E-39 251.0 18.9 150 21-178 99-278 (278)
6 PLN02781 Probable caffeoyl-CoA 100.0 2.1E-31 4.5E-36 229.0 19.3 149 22-178 50-233 (234)
7 KOG1663 O-methyltransferase [S 100.0 8.5E-30 1.8E-34 215.9 17.0 151 20-178 53-237 (237)
8 COG2519 GCD14 tRNA(1-methylade 99.7 1.1E-15 2.3E-20 131.9 13.4 134 9-154 63-198 (256)
9 COG2518 Pcm Protein-L-isoaspar 99.7 3.6E-16 7.8E-21 131.9 10.0 124 9-149 38-167 (209)
10 PLN03075 nicotianamine synthas 99.6 7.3E-15 1.6E-19 130.3 15.1 144 24-178 108-275 (296)
11 PRK13942 protein-L-isoaspartat 99.6 2.9E-15 6.3E-20 126.8 11.4 129 9-150 42-175 (212)
12 PF13578 Methyltransf_24: Meth 99.6 5.7E-16 1.2E-20 116.6 4.3 102 45-152 1-106 (106)
13 PRK13944 protein-L-isoaspartat 99.6 9.4E-15 2E-19 123.0 11.5 129 10-150 39-172 (205)
14 PF08704 GCD14: tRNA methyltra 99.6 1.7E-14 3.8E-19 125.1 12.0 133 11-153 11-148 (247)
15 PF12847 Methyltransf_18: Meth 99.6 2.3E-14 4.9E-19 107.8 10.5 103 40-150 1-110 (112)
16 PF01135 PCMT: Protein-L-isoas 99.6 4.4E-15 9.5E-20 126.0 7.0 130 8-150 37-171 (209)
17 TIGR00080 pimt protein-L-isoas 99.6 2.2E-14 4.9E-19 121.2 11.0 117 21-150 58-176 (215)
18 COG2242 CobL Precorrin-6B meth 99.6 9.5E-14 2.1E-18 115.2 14.3 113 29-154 24-138 (187)
19 PRK00377 cbiT cobalt-precorrin 99.6 1.2E-13 2.6E-18 115.4 14.4 110 37-154 37-148 (198)
20 PRK04457 spermidine synthase; 99.5 3.3E-13 7.2E-18 117.9 14.6 111 33-150 59-176 (262)
21 PRK07402 precorrin-6B methylas 99.5 6.5E-13 1.4E-17 110.6 14.8 123 20-153 20-144 (196)
22 TIGR02469 CbiT precorrin-6Y C5 99.5 7.6E-13 1.6E-17 100.5 13.0 107 34-150 13-121 (124)
23 PRK00312 pcm protein-L-isoaspa 99.5 5.1E-13 1.1E-17 112.4 12.5 113 22-150 60-174 (212)
24 TIGR00138 gidB 16S rRNA methyl 99.5 8.7E-13 1.9E-17 109.3 13.5 102 36-150 38-141 (181)
25 PRK00107 gidB 16S rRNA methylt 99.5 1.4E-12 3E-17 108.9 14.4 98 40-150 45-144 (187)
26 PRK08287 cobalt-precorrin-6Y C 99.5 1.4E-12 3.1E-17 107.6 13.8 119 23-154 14-134 (187)
27 PRK10909 rsmD 16S rRNA m(2)G96 99.4 6.1E-12 1.3E-16 106.0 14.4 120 24-150 33-158 (199)
28 COG2226 UbiE Methylase involve 99.4 5.5E-12 1.2E-16 108.9 13.7 118 30-156 41-161 (238)
29 PRK11036 putative S-adenosyl-L 99.3 2E-11 4.3E-16 105.7 13.4 113 26-149 32-147 (255)
30 TIGR03533 L3_gln_methyl protei 99.3 4.7E-11 1E-15 105.5 14.7 118 24-150 101-250 (284)
31 PRK00121 trmB tRNA (guanine-N( 99.3 1.5E-11 3.1E-16 103.4 10.6 129 11-149 8-154 (202)
32 PRK14902 16S rRNA methyltransf 99.3 2E-11 4.3E-16 113.9 12.4 126 21-153 231-381 (444)
33 PF01209 Ubie_methyltran: ubiE 99.3 1.2E-11 2.7E-16 106.4 10.1 134 31-172 38-180 (233)
34 PRK13943 protein-L-isoaspartat 99.3 4.3E-11 9.3E-16 107.7 14.0 127 10-149 43-178 (322)
35 PF05175 MTS: Methyltransferas 99.3 3E-11 6.5E-16 98.8 11.3 112 30-151 21-141 (170)
36 PRK01683 trans-aconitate 2-met 99.3 6.6E-11 1.4E-15 102.1 13.9 128 1-150 1-129 (258)
37 PF13847 Methyltransf_31: Meth 99.3 3E-11 6.6E-16 96.3 10.8 105 39-151 2-110 (152)
38 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.9E-11 6.2E-16 118.8 12.9 112 35-154 533-659 (702)
39 PRK15128 23S rRNA m(5)C1962 me 99.3 6.9E-11 1.5E-15 109.1 14.4 109 37-153 217-341 (396)
40 TIGR02752 MenG_heptapren 2-hep 99.3 1.8E-10 4E-15 97.6 15.3 109 34-150 39-150 (231)
41 PRK14903 16S rRNA methyltransf 99.3 6.2E-11 1.3E-15 110.4 13.5 127 20-153 217-368 (431)
42 TIGR00446 nop2p NOL1/NOP2/sun 99.3 8.7E-11 1.9E-15 102.6 13.4 118 27-152 58-200 (264)
43 PRK01581 speE spermidine synth 99.3 9.6E-11 2.1E-15 106.7 14.0 111 35-152 145-269 (374)
44 PRK00811 spermidine synthase; 99.3 8.4E-11 1.8E-15 103.9 13.3 107 37-150 73-190 (283)
45 PF13659 Methyltransf_26: Meth 99.3 6.5E-11 1.4E-15 89.6 10.9 100 42-149 2-113 (117)
46 PRK14904 16S rRNA methyltransf 99.3 6E-11 1.3E-15 110.8 12.5 125 20-153 230-379 (445)
47 TIGR00095 RNA methyltransferas 99.2 2.5E-10 5.4E-15 95.3 14.3 121 24-150 29-158 (189)
48 PRK15451 tRNA cmo(5)U34 methyl 99.2 3.9E-10 8.5E-15 97.4 15.8 110 39-155 55-169 (247)
49 PRK11805 N5-glutamine S-adenos 99.2 2.3E-10 5E-15 102.2 14.7 118 24-150 113-262 (307)
50 PLN02366 spermidine synthase 99.2 1.6E-10 3.5E-15 103.4 13.6 106 38-150 89-205 (308)
51 PRK14901 16S rRNA methyltransf 99.2 2.8E-10 6.1E-15 106.0 15.6 149 24-179 236-432 (434)
52 PRK11873 arsM arsenite S-adeno 99.2 2E-10 4.3E-15 100.1 12.7 111 35-153 72-185 (272)
53 TIGR00537 hemK_rel_arch HemK-r 99.2 7E-10 1.5E-14 91.0 14.2 115 28-153 7-143 (179)
54 COG4123 Predicted O-methyltran 99.2 3E-10 6.5E-15 98.5 12.2 118 27-150 31-170 (248)
55 PRK03522 rumB 23S rRNA methylu 99.2 5.1E-10 1.1E-14 100.1 13.4 116 24-150 153-274 (315)
56 PRK04266 fibrillarin; Provisio 99.2 3.5E-10 7.6E-15 97.0 11.8 116 25-149 55-174 (226)
57 PLN02233 ubiquinone biosynthes 99.2 1.4E-09 3E-14 95.0 15.5 114 34-154 67-185 (261)
58 PLN02244 tocopherol O-methyltr 99.2 5.5E-10 1.2E-14 101.0 13.4 102 39-149 117-221 (340)
59 PRK14103 trans-aconitate 2-met 99.2 6.6E-10 1.4E-14 96.0 13.2 105 30-150 20-125 (255)
60 TIGR00536 hemK_fam HemK family 99.2 8.7E-10 1.9E-14 97.2 14.1 118 24-150 94-243 (284)
61 PF03602 Cons_hypoth95: Conser 99.2 2.4E-10 5.2E-15 95.1 9.8 116 29-150 30-152 (183)
62 TIGR00740 methyltransferase, p 99.1 1.5E-09 3.2E-14 93.0 14.8 118 27-152 38-162 (239)
63 PRK10901 16S rRNA methyltransf 99.1 5.3E-10 1.2E-14 103.9 12.6 122 23-151 227-372 (427)
64 TIGR00479 rumA 23S rRNA (uraci 99.1 9.3E-10 2E-14 102.2 14.0 97 39-147 291-392 (431)
65 TIGR02085 meth_trns_rumB 23S r 99.1 1.4E-09 2.9E-14 99.7 14.8 118 23-151 212-335 (374)
66 TIGR00563 rsmB ribosomal RNA s 99.1 4.9E-10 1.1E-14 104.1 12.0 123 24-153 222-370 (426)
67 PLN02823 spermine synthase 99.1 1E-09 2.2E-14 99.4 13.5 106 38-150 101-219 (336)
68 TIGR00417 speE spermidine synt 99.1 1.1E-09 2.4E-14 96.0 13.2 106 38-150 70-185 (270)
69 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.3E-09 2.8E-14 90.9 12.5 102 39-148 15-129 (194)
70 COG1092 Predicted SAM-dependen 99.1 4.6E-10 1E-14 103.3 10.4 112 35-155 212-340 (393)
71 TIGR03534 RF_mod_PrmC protein- 99.1 2.8E-09 6.1E-14 90.9 14.0 116 25-150 70-216 (251)
72 TIGR01177 conserved hypothetic 99.1 1.7E-09 3.6E-14 97.2 13.1 117 22-149 164-292 (329)
73 PRK00517 prmA ribosomal protei 99.1 2.3E-09 5E-14 92.8 13.2 111 25-154 103-216 (250)
74 PRK14968 putative methyltransf 99.1 3.7E-09 8.1E-14 86.1 13.7 113 28-150 11-148 (188)
75 TIGR00406 prmA ribosomal prote 99.1 2.9E-09 6.3E-14 94.1 14.0 117 24-153 142-261 (288)
76 PRK13168 rumA 23S rRNA m(5)U19 99.1 2.4E-09 5.2E-14 100.0 14.2 102 39-152 296-402 (443)
77 COG0742 N6-adenine-specific me 99.1 2.7E-09 5.8E-14 89.0 12.8 139 29-182 31-177 (187)
78 PRK03612 spermidine synthase; 99.1 2.5E-09 5.4E-14 101.9 13.9 107 37-150 294-414 (521)
79 PRK11207 tellurite resistance 99.1 1.6E-09 3.4E-14 90.7 11.0 109 23-147 17-130 (197)
80 PRK14967 putative methyltransf 99.1 4.6E-09 9.9E-14 89.3 13.8 110 30-149 23-157 (223)
81 PF08241 Methyltransf_11: Meth 99.1 8.6E-10 1.9E-14 79.3 8.1 94 45-149 1-95 (95)
82 PLN02396 hexaprenyldihydroxybe 99.1 1.4E-09 3.1E-14 97.8 11.1 103 40-152 131-236 (322)
83 TIGR03587 Pse_Me-ase pseudamin 99.0 1.6E-09 3.6E-14 91.3 10.7 97 31-137 34-133 (204)
84 PRK08317 hypothetical protein; 99.0 4.6E-09 1E-13 87.9 13.4 115 30-151 9-124 (241)
85 PRK01544 bifunctional N5-gluta 99.0 3.8E-09 8.2E-14 100.4 14.3 101 41-150 139-268 (506)
86 smart00650 rADc Ribosomal RNA 99.0 4.5E-09 9.8E-14 85.5 12.9 107 35-152 8-114 (169)
87 PRK05031 tRNA (uracil-5-)-meth 99.0 6E-09 1.3E-13 95.1 14.3 116 24-152 187-322 (362)
88 TIGR00477 tehB tellurite resis 99.0 2.3E-09 4.9E-14 89.6 10.6 106 30-149 21-132 (195)
89 PRK15001 SAM-dependent 23S rib 99.0 4.8E-09 1E-13 96.3 13.1 117 29-153 217-343 (378)
90 KOG2915 tRNA(1-methyladenosine 99.0 3E-09 6.5E-14 93.0 11.0 126 13-149 78-208 (314)
91 PRK09328 N5-glutamine S-adenos 99.0 7.2E-09 1.6E-13 89.9 13.5 116 26-150 91-237 (275)
92 PRK00216 ubiE ubiquinone/menaq 99.0 1.1E-08 2.5E-13 86.0 13.8 106 37-149 48-156 (239)
93 PTZ00098 phosphoethanolamine N 99.0 6.7E-09 1.4E-13 90.7 12.6 107 37-153 49-158 (263)
94 PRK14966 unknown domain/N5-glu 99.0 1E-08 2.2E-13 95.0 14.3 120 24-150 234-380 (423)
95 TIGR03704 PrmC_rel_meth putati 99.0 1.4E-08 2.9E-13 88.4 14.0 101 41-150 87-215 (251)
96 PF13649 Methyltransf_25: Meth 99.0 1.4E-09 3.1E-14 80.9 6.8 96 44-145 1-101 (101)
97 PRK12335 tellurite resistance 99.0 5.1E-09 1.1E-13 92.4 11.4 105 30-148 111-220 (287)
98 smart00828 PKS_MT Methyltransf 99.0 4.7E-09 1E-13 88.5 10.6 103 42-153 1-106 (224)
99 PF10672 Methyltrans_SAM: S-ad 99.0 4E-09 8.6E-14 93.5 10.4 107 35-150 118-237 (286)
100 PF09445 Methyltransf_15: RNA 99.0 1.8E-09 3.9E-14 88.4 7.5 75 42-122 1-79 (163)
101 PRK10258 biotin biosynthesis p 99.0 7.1E-09 1.5E-13 89.2 11.6 112 25-150 27-139 (251)
102 COG4106 Tam Trans-aconitate me 99.0 3.8E-09 8.2E-14 89.8 9.5 126 2-150 1-128 (257)
103 PF02353 CMAS: Mycolic acid cy 99.0 5.8E-09 1.2E-13 91.9 11.0 112 31-154 53-169 (273)
104 PRK05134 bifunctional 3-demeth 99.0 3.6E-08 7.9E-13 83.7 15.3 119 23-150 31-150 (233)
105 TIGR02072 BioC biotin biosynth 98.9 1.6E-08 3.6E-13 84.8 12.5 101 39-150 33-134 (240)
106 TIGR02143 trmA_only tRNA (urac 98.9 1.9E-08 4.1E-13 91.6 13.7 114 25-151 179-312 (353)
107 PLN02336 phosphoethanolamine N 98.9 1.2E-08 2.6E-13 95.6 12.8 107 37-152 263-370 (475)
108 PRK15068 tRNA mo(5)U34 methylt 98.9 1.6E-08 3.4E-13 91.0 13.0 106 39-154 121-229 (322)
109 COG0421 SpeE Spermidine syntha 98.9 1.6E-08 3.5E-13 89.5 12.7 106 38-150 74-189 (282)
110 COG2521 Predicted archaeal met 98.9 1.8E-09 3.8E-14 92.7 6.3 109 38-156 132-249 (287)
111 PF05401 NodS: Nodulation prot 98.9 4.9E-09 1.1E-13 88.0 8.7 102 37-150 40-145 (201)
112 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 2.8E-08 6E-13 82.8 13.1 109 35-151 34-143 (223)
113 PRK06922 hypothetical protein; 98.9 2.5E-08 5.4E-13 96.7 13.9 117 31-154 409-541 (677)
114 cd02440 AdoMet_MTases S-adenos 98.9 2.5E-08 5.4E-13 71.0 10.6 99 43-149 1-102 (107)
115 TIGR02716 C20_methyl_CrtF C-20 98.9 2.8E-08 6.1E-13 88.1 13.2 114 30-153 139-257 (306)
116 PRK11705 cyclopropane fatty ac 98.9 3.5E-08 7.6E-13 90.8 13.6 101 37-153 164-269 (383)
117 PRK14121 tRNA (guanine-N(7)-)- 98.9 3.5E-08 7.7E-13 90.8 13.6 111 30-149 113-233 (390)
118 TIGR01983 UbiG ubiquinone bios 98.9 4.8E-08 1E-12 82.1 13.4 116 25-150 26-148 (224)
119 PRK09489 rsmC 16S ribosomal RN 98.9 3.3E-08 7.1E-13 89.7 13.1 117 26-154 183-307 (342)
120 PRK11933 yebU rRNA (cytosine-C 98.9 3.7E-08 8.1E-13 92.8 13.0 127 20-153 91-244 (470)
121 PTZ00146 fibrillarin; Provisio 98.9 3.1E-08 6.8E-13 87.9 11.8 102 39-149 131-235 (293)
122 PRK04338 N(2),N(2)-dimethylgua 98.8 6E-08 1.3E-12 89.3 13.9 98 41-150 58-157 (382)
123 PRK07580 Mg-protoporphyrin IX 98.8 5.5E-08 1.2E-12 81.9 12.7 97 39-149 62-163 (230)
124 PTZ00338 dimethyladenosine tra 98.8 6.8E-08 1.5E-12 86.0 13.8 106 20-135 15-123 (294)
125 COG2265 TrmA SAM-dependent met 98.8 5.2E-08 1.1E-12 91.0 13.1 119 24-153 273-399 (432)
126 PF01564 Spermine_synth: Sperm 98.8 2.7E-08 6E-13 86.3 10.6 107 37-150 73-190 (246)
127 PRK11088 rrmA 23S rRNA methylt 98.8 3.2E-08 6.9E-13 86.6 10.4 94 40-149 85-179 (272)
128 COG2230 Cfa Cyclopropane fatty 98.8 7.4E-08 1.6E-12 85.1 12.6 120 23-154 52-179 (283)
129 COG2227 UbiG 2-polyprenyl-3-me 98.8 3.4E-08 7.3E-13 85.1 9.7 119 23-153 39-163 (243)
130 PLN02490 MPBQ/MSBQ methyltrans 98.8 7.5E-08 1.6E-12 87.3 12.1 100 40-149 113-213 (340)
131 COG2890 HemK Methylase of poly 98.8 4.3E-08 9.4E-13 86.6 10.1 90 24-121 92-185 (280)
132 TIGR00308 TRM1 tRNA(guanine-26 98.8 1.3E-07 2.7E-12 86.9 13.4 99 42-150 46-146 (374)
133 TIGR03840 TMPT_Se_Te thiopurin 98.8 8.2E-08 1.8E-12 81.6 11.3 99 40-147 34-148 (213)
134 COG2263 Predicted RNA methylas 98.8 7.2E-08 1.6E-12 80.4 10.6 120 21-154 23-148 (198)
135 TIGR03438 probable methyltrans 98.8 1.2E-07 2.7E-12 84.3 12.8 120 24-149 42-175 (301)
136 TIGR02021 BchM-ChlM magnesium 98.8 1.2E-07 2.6E-12 80.0 12.1 99 38-149 53-156 (219)
137 PF02475 Met_10: Met-10+ like- 98.8 3.6E-08 7.7E-13 83.3 8.6 99 38-148 99-199 (200)
138 COG2264 PrmA Ribosomal protein 98.7 6.6E-08 1.4E-12 86.1 10.4 112 29-154 153-266 (300)
139 PHA03412 putative methyltransf 98.7 2.2E-07 4.8E-12 80.3 13.2 121 20-153 31-165 (241)
140 PRK11188 rrmJ 23S rRNA methylt 98.7 9.8E-08 2.1E-12 80.8 10.6 97 38-150 49-164 (209)
141 COG2520 Predicted methyltransf 98.7 1.3E-07 2.8E-12 85.6 11.6 118 25-154 173-292 (341)
142 PLN02336 phosphoethanolamine N 98.7 1.3E-07 2.8E-12 88.6 11.7 109 35-153 32-145 (475)
143 PRK13255 thiopurine S-methyltr 98.7 1.8E-07 3.8E-12 79.9 11.5 96 40-146 37-150 (218)
144 PRK14896 ksgA 16S ribosomal RN 98.7 1.7E-07 3.8E-12 81.5 11.3 94 19-122 7-101 (258)
145 PF06325 PrmA: Ribosomal prote 98.7 7.1E-08 1.5E-12 85.9 8.4 115 25-154 145-262 (295)
146 PF03848 TehB: Tellurite resis 98.7 1.6E-07 3.4E-12 78.8 10.0 111 24-150 15-132 (192)
147 PF05958 tRNA_U5-meth_tr: tRNA 98.7 5.3E-08 1.2E-12 88.6 7.6 106 23-136 176-301 (352)
148 TIGR00452 methyltransferase, p 98.7 3.2E-07 7E-12 82.4 12.4 104 39-152 120-226 (314)
149 TIGR00438 rrmJ cell division p 98.7 2.7E-07 5.9E-12 76.2 10.6 105 30-150 22-145 (188)
150 KOG2904 Predicted methyltransf 98.6 3E-07 6.4E-12 80.8 11.2 93 23-119 125-229 (328)
151 PF08242 Methyltransf_12: Meth 98.6 1.2E-08 2.6E-13 75.3 2.1 96 45-147 1-99 (99)
152 KOG1661 Protein-L-isoaspartate 98.6 2.3E-07 5E-12 78.6 10.0 108 25-136 65-185 (237)
153 PF04989 CmcI: Cephalosporin h 98.6 3.6E-07 7.7E-12 77.4 11.1 127 22-153 14-149 (206)
154 PRK06202 hypothetical protein; 98.6 2E-07 4.3E-12 79.4 9.7 111 30-149 50-165 (232)
155 PRK05785 hypothetical protein; 98.6 5.5E-07 1.2E-11 77.0 12.0 98 30-142 40-139 (226)
156 PRK00274 ksgA 16S ribosomal RN 98.6 1.6E-06 3.6E-11 76.0 14.5 104 22-136 24-127 (272)
157 PF03059 NAS: Nicotianamine sy 98.6 6.6E-07 1.4E-11 79.0 11.3 106 40-153 120-232 (276)
158 COG2813 RsmC 16S RNA G1207 met 98.6 9.8E-07 2.1E-11 78.5 12.1 117 24-151 143-267 (300)
159 PHA03411 putative methyltransf 98.6 1.3E-06 2.7E-11 77.2 12.6 76 37-122 61-136 (279)
160 TIGR00755 ksgA dimethyladenosi 98.6 1.2E-06 2.5E-11 76.0 12.3 104 20-135 8-115 (253)
161 PF13489 Methyltransf_23: Meth 98.6 9.1E-07 2E-11 69.7 10.6 110 25-153 6-117 (161)
162 PRK00050 16S rRNA m(4)C1402 me 98.5 5.4E-07 1.2E-11 80.3 10.2 89 29-122 9-100 (296)
163 KOG4300 Predicted methyltransf 98.5 3.4E-07 7.4E-12 77.5 7.9 127 41-177 77-215 (252)
164 PLN02585 magnesium protoporphy 98.5 2.1E-06 4.5E-11 77.2 13.3 97 40-150 144-249 (315)
165 smart00138 MeTrc Methyltransfe 98.5 1.2E-06 2.6E-11 76.7 11.5 105 40-150 99-241 (264)
166 PF10294 Methyltransf_16: Puta 98.5 2E-06 4.3E-11 70.7 11.2 110 37-153 42-159 (173)
167 KOG1540 Ubiquinone biosynthesi 98.5 1.9E-06 4.1E-11 75.1 10.8 114 30-150 91-213 (296)
168 PF02527 GidB: rRNA small subu 98.5 2.9E-06 6.2E-11 70.8 11.6 95 43-150 51-147 (184)
169 COG0144 Sun tRNA and rRNA cyto 98.4 2.6E-06 5.6E-11 77.7 11.6 129 20-154 136-291 (355)
170 PF01170 UPF0020: Putative RNA 98.4 6.2E-06 1.3E-10 68.2 12.0 123 21-149 9-149 (179)
171 PLN02672 methionine S-methyltr 98.4 3.2E-06 6.8E-11 86.5 11.7 93 25-121 99-212 (1082)
172 PF02390 Methyltransf_4: Putat 98.4 3.6E-06 7.7E-11 70.7 10.1 98 42-147 19-129 (195)
173 PRK11727 23S rRNA mA1618 methy 98.3 9E-06 2E-10 73.3 12.7 79 40-122 114-199 (321)
174 PF05185 PRMT5: PRMT5 arginine 98.3 2.8E-06 6.2E-11 79.7 9.5 103 41-150 187-296 (448)
175 KOG1270 Methyltransferases [Co 98.3 9.1E-07 2E-11 77.2 5.7 96 42-149 91-194 (282)
176 PRK00536 speE spermidine synth 98.3 1.1E-05 2.4E-10 70.9 12.0 100 35-151 67-171 (262)
177 COG0030 KsgA Dimethyladenosine 98.3 1.5E-05 3.2E-10 69.8 12.5 109 19-137 8-118 (259)
178 KOG2730 Methylase [General fun 98.3 2.5E-06 5.4E-11 72.9 7.4 99 23-127 75-180 (263)
179 PF08003 Methyltransf_9: Prote 98.3 1.1E-05 2.4E-10 72.0 11.7 117 29-156 105-224 (315)
180 COG0220 Predicted S-adenosylme 98.3 1.7E-05 3.6E-10 68.3 12.2 101 41-149 49-162 (227)
181 KOG3010 Methyltransferase [Gen 98.2 3.4E-06 7.3E-11 72.9 7.1 115 29-152 21-138 (261)
182 COG0357 GidB Predicted S-adeno 98.2 1.5E-05 3.2E-10 68.1 10.9 118 41-171 68-203 (215)
183 PRK04148 hypothetical protein; 98.2 1.4E-05 3E-10 63.5 9.5 98 27-137 3-101 (134)
184 PRK10742 putative methyltransf 98.2 1.3E-05 2.8E-10 69.8 9.6 88 29-122 75-174 (250)
185 COG1041 Predicted DNA modifica 98.2 2.1E-05 4.6E-10 71.3 10.9 116 22-149 179-308 (347)
186 COG4076 Predicted RNA methylas 98.1 7.7E-06 1.7E-10 68.6 7.2 107 28-148 21-132 (252)
187 TIGR02081 metW methionine bios 98.1 1.6E-05 3.4E-10 66.0 9.1 87 40-137 13-101 (194)
188 KOG2899 Predicted methyltransf 98.1 2E-05 4.4E-10 68.3 9.3 145 26-179 43-257 (288)
189 KOG1271 Methyltransferases [Ge 98.1 2.9E-05 6.2E-10 64.9 9.7 118 29-154 52-184 (227)
190 KOG3191 Predicted N6-DNA-methy 98.1 2.6E-05 5.6E-10 65.0 9.2 81 37-122 40-120 (209)
191 PF00891 Methyltransf_2: O-met 98.1 1.8E-05 4E-10 67.6 8.6 102 37-154 97-203 (241)
192 PF05724 TPMT: Thiopurine S-me 98.0 1.9E-05 4.2E-10 67.4 8.2 113 23-146 21-150 (218)
193 KOG2187 tRNA uracil-5-methyltr 98.0 1.6E-05 3.5E-10 75.0 8.2 106 24-137 363-479 (534)
194 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 2.2E-05 4.8E-10 69.5 8.6 125 22-153 67-221 (283)
195 KOG0820 Ribosomal RNA adenine 98.0 2.7E-05 5.8E-10 68.5 8.5 91 23-122 41-133 (315)
196 PF05711 TylF: Macrocin-O-meth 98.0 4.6E-05 9.9E-10 66.4 9.7 143 23-170 53-240 (248)
197 PRK13256 thiopurine S-methyltr 98.0 6.5E-05 1.4E-09 64.6 10.3 119 24-152 28-164 (226)
198 KOG3420 Predicted RNA methylas 98.0 2.1E-05 4.5E-10 63.5 6.6 97 20-122 24-124 (185)
199 KOG1499 Protein arginine N-met 98.0 3.1E-05 6.8E-10 70.0 8.0 75 38-120 58-135 (346)
200 TIGR00006 S-adenosyl-methyltra 97.9 0.00011 2.4E-09 65.8 10.3 89 29-122 10-102 (305)
201 PF05891 Methyltransf_PK: AdoM 97.8 4.4E-05 9.6E-10 65.1 6.7 119 29-156 39-167 (218)
202 COG3963 Phospholipid N-methylt 97.8 0.00022 4.9E-09 58.8 10.2 114 26-149 34-154 (194)
203 COG4262 Predicted spermidine s 97.8 0.00031 6.7E-09 64.4 12.1 134 39-179 288-453 (508)
204 KOG1709 Guanidinoacetate methy 97.8 0.0008 1.7E-08 57.7 13.7 143 3-156 56-211 (271)
205 PF00398 RrnaAD: Ribosomal RNA 97.8 7.4E-05 1.6E-09 65.2 7.3 108 20-136 9-119 (262)
206 PF07021 MetW: Methionine bios 97.8 0.0002 4.3E-09 60.1 9.4 99 39-152 12-112 (193)
207 KOG1500 Protein arginine N-met 97.8 0.00016 3.4E-09 65.7 9.0 75 38-120 175-251 (517)
208 PF12147 Methyltransf_20: Puta 97.7 0.0004 8.7E-09 61.8 11.3 126 23-155 118-253 (311)
209 PLN02232 ubiquinone biosynthes 97.7 0.0002 4.4E-09 57.9 8.4 79 71-154 1-84 (160)
210 TIGR01444 fkbM_fam methyltrans 97.7 0.00011 2.4E-09 57.3 6.3 55 43-102 1-57 (143)
211 KOG2361 Predicted methyltransf 97.7 8.3E-05 1.8E-09 64.4 5.5 107 39-150 70-182 (264)
212 PF13679 Methyltransf_32: Meth 97.6 0.00048 1E-08 54.5 9.4 77 28-106 9-95 (141)
213 PHA01634 hypothetical protein 97.6 0.00018 4E-09 56.8 6.6 74 39-122 27-102 (156)
214 PRK01747 mnmC bifunctional tRN 97.6 0.00093 2E-08 65.5 12.0 109 39-152 56-207 (662)
215 PRK01544 bifunctional N5-gluta 97.5 0.0011 2.5E-08 63.2 12.0 102 38-147 345-458 (506)
216 COG4976 Predicted methyltransf 97.5 2.8E-05 6.1E-10 67.1 0.4 114 23-150 109-224 (287)
217 PF04816 DUF633: Family of unk 97.5 0.00073 1.6E-08 57.3 8.9 101 44-152 1-103 (205)
218 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00082 1.8E-08 66.6 10.3 97 24-122 173-313 (702)
219 PF08123 DOT1: Histone methyla 97.4 0.0015 3.3E-08 55.4 10.3 120 28-155 31-162 (205)
220 PF02005 TRM: N2,N2-dimethylgu 97.4 0.0008 1.7E-08 62.0 9.2 104 41-153 50-156 (377)
221 PF01795 Methyltransf_5: MraW 97.3 0.00086 1.9E-08 60.3 7.8 88 29-122 10-103 (310)
222 COG1064 AdhP Zn-dependent alco 97.3 0.0029 6.3E-08 57.5 10.9 100 36-152 162-261 (339)
223 KOG1122 tRNA and rRNA cytosine 97.1 0.0011 2.3E-08 61.6 6.7 112 35-153 236-373 (460)
224 PF04445 SAM_MT: Putative SAM- 97.1 0.00089 1.9E-08 57.9 5.7 75 42-122 77-161 (234)
225 TIGR00478 tly hemolysin TlyA f 97.1 0.0027 5.9E-08 54.7 8.6 86 40-142 75-164 (228)
226 KOG1541 Predicted protein carb 97.1 0.0014 3E-08 56.4 6.7 97 40-149 50-158 (270)
227 COG2384 Predicted SAM-dependen 97.1 0.0078 1.7E-07 51.6 11.2 114 32-153 7-123 (226)
228 PF02384 N6_Mtase: N-6 DNA Met 97.1 0.0016 3.4E-08 57.7 7.3 132 20-156 26-191 (311)
229 COG1063 Tdh Threonine dehydrog 97.1 0.0086 1.9E-07 54.3 12.2 104 39-155 167-273 (350)
230 PF06080 DUF938: Protein of un 97.1 0.0033 7.2E-08 53.3 8.5 126 20-154 7-144 (204)
231 COG0275 Predicted S-adenosylme 97.0 0.0051 1.1E-07 55.0 9.7 88 30-122 14-106 (314)
232 KOG1562 Spermidine synthase [A 97.0 0.0029 6.2E-08 56.5 8.0 108 35-149 116-234 (337)
233 PF01269 Fibrillarin: Fibrilla 97.0 0.014 3.1E-07 50.2 11.6 103 39-149 72-177 (229)
234 COG3510 CmcI Cephalosporin hyd 96.9 0.0065 1.4E-07 51.3 8.8 122 23-153 52-182 (237)
235 PRK10611 chemotaxis methyltran 96.9 0.012 2.7E-07 52.3 10.8 122 22-150 96-261 (287)
236 PF01728 FtsJ: FtsJ-like methy 96.9 0.0026 5.7E-08 51.9 5.9 95 40-150 23-138 (181)
237 COG1867 TRM1 N2,N2-dimethylgua 96.8 0.01 2.2E-07 54.4 10.1 100 41-150 53-153 (380)
238 TIGR02987 met_A_Alw26 type II 96.8 0.0066 1.4E-07 58.0 9.2 102 19-122 3-122 (524)
239 PF05971 Methyltransf_10: Prot 96.8 0.0079 1.7E-07 53.8 8.7 88 31-122 88-187 (299)
240 PRK11760 putative 23S rRNA C24 96.7 0.019 4.1E-07 52.4 10.5 83 39-137 210-292 (357)
241 KOG1227 Putative methyltransfe 96.6 0.00079 1.7E-08 60.1 1.3 111 28-150 182-296 (351)
242 COG0116 Predicted N6-adenine-s 96.6 0.015 3.3E-07 53.6 9.3 109 26-137 177-333 (381)
243 PF01739 CheR: CheR methyltran 96.5 0.0063 1.4E-07 51.2 6.2 105 40-150 31-174 (196)
244 COG3897 Predicted methyltransf 96.5 0.0051 1.1E-07 52.0 5.6 73 39-120 78-150 (218)
245 PF09243 Rsm22: Mitochondrial 96.5 0.0081 1.8E-07 52.9 7.0 49 38-89 31-79 (274)
246 KOG3178 Hydroxyindole-O-methyl 96.5 0.017 3.7E-07 52.5 8.8 97 42-155 179-280 (342)
247 PF01861 DUF43: Protein of unk 96.4 0.07 1.5E-06 46.4 11.8 147 21-179 22-178 (243)
248 PRK09880 L-idonate 5-dehydroge 96.4 0.043 9.3E-07 49.0 10.9 99 40-152 169-267 (343)
249 TIGR03439 methyl_EasF probable 96.4 0.11 2.4E-06 46.9 13.5 127 23-153 54-200 (319)
250 COG0500 SmtA SAM-dependent met 96.3 0.12 2.5E-06 37.3 10.9 102 44-153 52-157 (257)
251 PF05219 DREV: DREV methyltran 96.2 0.062 1.3E-06 47.2 10.6 90 39-149 93-186 (265)
252 COG0293 FtsJ 23S rRNA methylas 96.2 0.038 8.2E-07 47.0 8.8 97 39-151 44-159 (205)
253 COG1062 AdhC Zn-dependent alco 96.2 0.081 1.7E-06 48.3 11.3 111 28-155 174-289 (366)
254 PRK09424 pntA NAD(P) transhydr 96.2 0.047 1E-06 52.4 10.4 109 38-154 162-288 (509)
255 KOG1253 tRNA methyltransferase 96.1 0.0067 1.4E-07 57.4 4.4 110 32-150 101-215 (525)
256 COG1889 NOP1 Fibrillarin-like 96.1 0.063 1.4E-06 45.8 9.6 106 38-152 74-182 (231)
257 cd08238 sorbose_phosphate_red 96.0 0.071 1.5E-06 49.1 10.8 103 39-149 174-287 (410)
258 cd08281 liver_ADH_like1 Zinc-d 96.0 0.064 1.4E-06 48.5 10.3 100 38-151 189-290 (371)
259 TIGR03451 mycoS_dep_FDH mycoth 96.0 0.06 1.3E-06 48.3 10.0 101 38-152 174-277 (358)
260 PF00107 ADH_zinc_N: Zinc-bind 95.8 0.038 8.3E-07 41.9 6.7 89 52-154 2-92 (130)
261 PF04378 RsmJ: Ribosomal RNA s 95.8 0.073 1.6E-06 46.4 9.1 125 23-156 41-170 (245)
262 PF05430 Methyltransf_30: S-ad 95.8 0.024 5.2E-07 44.4 5.5 56 95-153 33-92 (124)
263 PF03291 Pox_MCEL: mRNA cappin 95.8 0.069 1.5E-06 48.5 9.2 113 30-150 48-185 (331)
264 PRK10309 galactitol-1-phosphat 95.7 0.11 2.5E-06 46.1 10.4 102 39-153 159-262 (347)
265 COG1352 CheR Methylase of chem 95.7 0.12 2.5E-06 45.7 10.1 134 9-150 56-240 (268)
266 KOG3201 Uncharacterized conser 95.7 0.011 2.4E-07 48.7 3.4 102 40-149 29-139 (201)
267 cd08237 ribitol-5-phosphate_DH 95.7 0.12 2.5E-06 46.3 10.4 95 39-152 162-257 (341)
268 cd00315 Cyt_C5_DNA_methylase C 95.7 0.065 1.4E-06 47.1 8.5 96 43-153 2-113 (275)
269 PLN03154 putative allyl alcoho 95.6 0.23 5E-06 44.7 11.9 103 36-152 154-259 (348)
270 KOG0024 Sorbitol dehydrogenase 95.6 0.13 2.7E-06 46.8 9.9 115 23-150 143-273 (354)
271 PF06962 rRNA_methylase: Putat 95.5 0.049 1.1E-06 43.6 6.6 82 69-156 1-95 (140)
272 PLN02827 Alcohol dehydrogenase 95.5 0.14 3E-06 46.6 10.4 102 37-152 190-296 (378)
273 TIGR03201 dearomat_had 6-hydro 95.5 0.13 2.7E-06 46.1 9.9 103 38-153 164-274 (349)
274 cd08254 hydroxyacyl_CoA_DH 6-h 95.5 0.14 3.1E-06 44.6 10.0 98 38-149 163-261 (338)
275 KOG1501 Arginine N-methyltrans 95.4 0.027 5.8E-07 53.0 5.4 59 42-105 68-128 (636)
276 COG1189 Predicted rRNA methyla 95.4 0.053 1.2E-06 47.1 6.9 113 22-149 58-176 (245)
277 PLN02586 probable cinnamyl alc 95.4 0.23 5.1E-06 44.8 11.5 94 39-150 182-277 (360)
278 COG0286 HsdM Type I restrictio 95.4 0.28 6.1E-06 46.8 12.5 133 20-156 166-334 (489)
279 TIGR01202 bchC 2-desacetyl-2-h 95.4 0.11 2.4E-06 45.7 9.2 88 40-152 144-232 (308)
280 KOG2940 Predicted methyltransf 95.3 0.062 1.3E-06 46.8 7.0 95 42-149 74-172 (325)
281 PF07091 FmrO: Ribosomal RNA m 95.2 0.061 1.3E-06 47.0 6.7 105 8-118 69-177 (251)
282 PF04672 Methyltransf_19: S-ad 95.2 0.072 1.6E-06 47.0 7.1 117 34-155 62-194 (267)
283 COG0604 Qor NADPH:quinone redu 95.2 0.32 7E-06 43.8 11.6 102 37-153 139-243 (326)
284 cd08294 leukotriene_B4_DH_like 95.2 0.31 6.7E-06 42.5 11.2 100 35-149 138-239 (329)
285 PF01053 Cys_Met_Meta_PP: Cys/ 95.1 0.35 7.6E-06 44.8 11.8 149 21-179 50-200 (386)
286 TIGR02825 B4_12hDH leukotriene 95.1 0.4 8.6E-06 42.2 11.8 102 35-151 133-237 (325)
287 cd08230 glucose_DH Glucose deh 95.1 0.24 5.3E-06 44.3 10.4 98 39-153 171-271 (355)
288 cd08293 PTGR2 Prostaglandin re 95.0 0.31 6.7E-06 43.0 10.7 95 42-150 156-253 (345)
289 cd08295 double_bond_reductase_ 95.0 0.42 9.2E-06 42.3 11.6 101 36-150 147-250 (338)
290 KOG2360 Proliferation-associat 94.9 0.024 5.2E-07 52.3 3.4 98 21-122 194-294 (413)
291 cd08277 liver_alcohol_DH_like 94.9 0.39 8.5E-06 43.2 11.3 102 38-152 182-287 (365)
292 TIGR02818 adh_III_F_hyde S-(hy 94.9 0.45 9.8E-06 43.0 11.7 102 38-152 183-288 (368)
293 TIGR01007 eps_fam capsular exo 94.8 0.37 8.1E-06 39.8 10.2 44 39-83 15-61 (204)
294 TIGR03815 CpaE_hom_Actino heli 94.7 0.55 1.2E-05 41.9 11.6 71 9-80 53-134 (322)
295 TIGR02822 adh_fam_2 zinc-bindi 94.5 0.79 1.7E-05 40.8 12.2 94 37-152 162-255 (329)
296 KOG1975 mRNA cap methyltransfe 94.5 0.16 3.4E-06 46.2 7.5 104 39-150 116-236 (389)
297 cd08301 alcohol_DH_plants Plan 94.4 0.56 1.2E-05 42.1 11.0 105 36-153 183-291 (369)
298 cd08239 THR_DH_like L-threonin 94.3 0.75 1.6E-05 40.6 11.6 99 38-150 161-261 (339)
299 cd08283 FDH_like_1 Glutathione 94.3 0.62 1.3E-05 42.4 11.2 106 36-150 180-305 (386)
300 PRK09422 ethanol-active dehydr 94.3 0.81 1.8E-05 40.1 11.6 100 36-149 158-259 (338)
301 PRK05967 cystathionine beta-ly 94.3 1.6 3.4E-05 40.6 13.9 130 22-155 60-190 (395)
302 PRK07671 cystathionine beta-ly 94.2 0.93 2E-05 41.5 12.3 130 21-155 45-175 (377)
303 PLN02740 Alcohol dehydrogenase 94.2 0.67 1.4E-05 42.1 11.2 104 36-152 194-301 (381)
304 KOG1269 SAM-dependent methyltr 94.2 0.061 1.3E-06 49.5 4.3 108 37-153 107-217 (364)
305 TIGR03366 HpnZ_proposed putati 94.2 1.2 2.6E-05 38.5 12.4 99 39-153 119-220 (280)
306 PF05148 Methyltransf_8: Hypot 94.1 0.36 7.7E-06 41.4 8.5 109 21-155 54-162 (219)
307 PF01408 GFO_IDH_MocA: Oxidore 94.0 1.7 3.7E-05 32.3 11.5 83 43-137 2-85 (120)
308 PF07015 VirC1: VirC1 protein; 94.0 0.12 2.6E-06 44.7 5.6 72 50-122 11-93 (231)
309 PRK10416 signal recognition pa 94.0 0.49 1.1E-05 42.7 9.8 80 40-122 113-206 (318)
310 cd08300 alcohol_DH_class_III c 94.0 1 2.2E-05 40.6 11.8 104 37-153 183-290 (368)
311 PF02254 TrkA_N: TrkA-N domain 94.0 0.6 1.3E-05 34.8 8.8 81 44-137 1-86 (116)
312 TIGR00064 ftsY signal recognit 94.0 0.66 1.4E-05 40.8 10.3 134 40-180 71-230 (272)
313 TIGR03029 EpsG chain length de 93.9 0.46 9.9E-06 41.2 9.2 41 40-81 102-145 (274)
314 cd03115 SRP The signal recogni 93.9 0.87 1.9E-05 36.5 10.2 105 44-151 3-122 (173)
315 TIGR00518 alaDH alanine dehydr 93.9 0.42 9.1E-06 43.9 9.3 74 39-120 165-238 (370)
316 KOG0022 Alcohol dehydrogenase, 93.9 0.87 1.9E-05 41.4 10.9 109 35-156 187-299 (375)
317 TIGR00561 pntA NAD(P) transhyd 93.9 0.3 6.5E-06 46.9 8.5 45 38-86 161-205 (511)
318 TIGR01968 minD_bact septum sit 93.9 0.4 8.6E-06 40.6 8.6 36 43-79 3-41 (261)
319 PRK05708 2-dehydropantoate 2-r 93.9 0.39 8.5E-06 42.7 8.8 101 42-154 3-108 (305)
320 PF03141 Methyltransf_29: Puta 93.8 0.057 1.2E-06 51.4 3.5 100 40-153 117-221 (506)
321 PRK10083 putative oxidoreducta 93.6 1.5 3.2E-05 38.5 12.1 102 37-150 157-258 (339)
322 TIGR01969 minD_arch cell divis 93.6 0.44 9.6E-06 40.2 8.4 29 50-79 10-40 (251)
323 PRK08247 cystathionine gamma-s 93.6 2.4 5.3E-05 38.5 13.6 128 22-154 48-176 (366)
324 PRK08064 cystathionine beta-ly 93.5 1.6 3.4E-05 40.2 12.4 127 21-154 49-178 (390)
325 cd02042 ParA ParA and ParB of 93.5 0.4 8.6E-06 35.1 7.0 29 50-79 9-39 (104)
326 PF07942 N2227: N2227-like pro 93.5 0.84 1.8E-05 40.4 10.1 101 41-153 57-204 (270)
327 COG4798 Predicted methyltransf 93.5 0.25 5.5E-06 42.0 6.4 120 29-156 38-172 (238)
328 PF06564 YhjQ: YhjQ protein; 93.4 0.76 1.7E-05 40.0 9.6 38 43-81 3-43 (243)
329 cd00401 AdoHcyase S-adenosyl-L 93.4 1.4 2.9E-05 41.4 11.8 89 39-151 200-289 (413)
330 cd05188 MDR Medium chain reduc 93.3 1.5 3.2E-05 36.5 11.0 97 39-149 133-230 (271)
331 PF02558 ApbA: Ketopantoate re 93.3 0.51 1.1E-05 36.9 7.7 100 44-154 1-105 (151)
332 cd08286 FDH_like_ADH2 formalde 93.3 1.3 2.7E-05 39.2 11.0 101 37-150 163-265 (345)
333 cd08233 butanediol_DH_like (2R 93.2 1.4 2.9E-05 39.2 11.2 103 37-153 169-274 (351)
334 PRK10867 signal recognition pa 93.2 0.72 1.6E-05 43.5 9.7 107 41-152 100-224 (433)
335 cd05278 FDH_like Formaldehyde 93.2 1 2.2E-05 39.6 10.3 101 37-150 164-266 (347)
336 cd08296 CAD_like Cinnamyl alco 93.2 1.4 3.1E-05 38.8 11.2 98 37-149 160-257 (333)
337 KOG2793 Putative N2,N2-dimethy 93.1 0.65 1.4E-05 40.6 8.7 102 40-150 86-199 (248)
338 PRK07810 O-succinylhomoserine 93.1 2 4.3E-05 39.8 12.5 128 21-156 65-197 (403)
339 PLN02514 cinnamyl-alcohol dehy 93.0 1.7 3.8E-05 39.0 11.8 98 39-152 179-276 (357)
340 PF03807 F420_oxidored: NADP o 93.0 0.61 1.3E-05 33.6 7.2 88 43-149 1-92 (96)
341 PRK07582 cystathionine gamma-l 93.0 1.6 3.5E-05 39.7 11.6 126 22-154 47-172 (366)
342 PRK10818 cell division inhibit 93.0 0.79 1.7E-05 39.5 9.1 29 50-79 12-42 (270)
343 cd08285 NADP_ADH NADP(H)-depen 93.0 2.1 4.5E-05 38.0 12.0 104 37-153 163-268 (351)
344 PRK08574 cystathionine gamma-s 93.0 1.8 3.9E-05 39.8 11.9 123 22-154 49-177 (385)
345 PHA02518 ParA-like protein; Pr 92.9 0.37 8.1E-06 39.5 6.7 84 50-137 10-98 (211)
346 PRK12475 thiamine/molybdopteri 92.9 1.2 2.5E-05 40.6 10.3 80 40-122 23-126 (338)
347 PRK06702 O-acetylhomoserine am 92.9 4.2 9E-05 38.3 14.3 123 23-154 58-187 (432)
348 PRK11524 putative methyltransf 92.8 0.34 7.4E-06 42.7 6.7 55 93-149 7-79 (284)
349 PRK11064 wecC UDP-N-acetyl-D-m 92.8 0.88 1.9E-05 42.4 9.7 102 42-156 4-124 (415)
350 PRK07502 cyclohexadienyl dehyd 92.8 1.3 2.9E-05 39.1 10.4 90 42-150 7-98 (307)
351 PF05050 Methyltransf_21: Meth 92.7 0.18 4E-06 39.4 4.4 40 46-87 1-42 (167)
352 TIGR01005 eps_transp_fam exopo 92.7 0.95 2.1E-05 45.1 10.3 105 39-150 544-687 (754)
353 COG0686 Ald Alanine dehydrogen 92.6 1.1 2.3E-05 40.9 9.4 103 40-156 167-273 (371)
354 COG1748 LYS9 Saccharopine dehy 92.5 1 2.2E-05 41.9 9.5 87 42-136 2-90 (389)
355 PF03686 UPF0146: Uncharacteri 92.5 1.1 2.4E-05 35.2 8.4 89 32-137 5-94 (127)
356 PRK08861 cystathionine gamma-s 92.5 2.6 5.5E-05 39.0 12.2 128 21-156 48-180 (388)
357 TIGR01324 cysta_beta_ly_B cyst 92.5 3.9 8.3E-05 37.6 13.3 131 22-156 46-177 (377)
358 TIGR03453 partition_RepA plasm 92.4 1.5 3.3E-05 40.2 10.6 58 22-80 70-145 (387)
359 PF00145 DNA_methylase: C-5 cy 92.3 0.71 1.5E-05 40.3 7.9 95 43-153 2-112 (335)
360 PRK09028 cystathionine beta-ly 92.3 3.9 8.3E-05 38.0 13.1 147 22-178 57-204 (394)
361 cd08265 Zn_ADH3 Alcohol dehydr 92.2 1.7 3.7E-05 39.4 10.6 100 38-150 201-306 (384)
362 PRK05968 hypothetical protein; 92.1 4.4 9.6E-05 37.2 13.2 129 22-155 59-188 (389)
363 PRK07812 O-acetylhomoserine am 92.1 3.1 6.7E-05 39.1 12.3 126 21-154 64-195 (436)
364 PF03721 UDPG_MGDP_dh_N: UDP-g 92.1 0.92 2E-05 37.6 7.9 102 43-156 2-125 (185)
365 PRK08249 cystathionine gamma-s 92.1 3 6.5E-05 38.5 12.2 124 22-154 60-189 (398)
366 PRK08114 cystathionine beta-ly 92.0 7.6 0.00016 36.1 14.7 131 20-156 56-191 (395)
367 PRK13699 putative methylase; P 91.8 0.42 9.1E-06 41.0 5.8 52 95-149 2-70 (227)
368 KOG1596 Fibrillarin and relate 91.8 0.55 1.2E-05 41.2 6.4 104 39-149 155-260 (317)
369 PLN02662 cinnamyl-alcohol dehy 91.8 0.74 1.6E-05 40.2 7.5 78 41-121 4-85 (322)
370 PRK07269 cystathionine gamma-s 91.7 4.6 0.0001 36.8 12.9 126 21-155 49-177 (364)
371 PLN02178 cinnamyl-alcohol dehy 91.7 2.9 6.2E-05 38.1 11.5 95 40-152 178-274 (375)
372 PF01210 NAD_Gly3P_dh_N: NAD-d 91.7 1.9 4.1E-05 34.4 9.1 93 43-149 1-101 (157)
373 PRK08045 cystathionine gamma-s 91.6 3.7 8E-05 37.8 12.2 126 21-155 47-178 (386)
374 PRK13849 putative crown gall t 91.6 1.1 2.5E-05 38.3 8.3 72 50-122 11-93 (231)
375 PRK07811 cystathionine gamma-s 91.5 3.3 7.2E-05 38.0 11.8 123 22-155 57-187 (388)
376 KOG2352 Predicted spermine/spe 91.5 0.095 2.1E-06 49.7 1.6 111 39-158 296-423 (482)
377 cd08243 quinone_oxidoreductase 91.5 4.1 9E-05 34.8 11.8 96 38-149 140-236 (320)
378 cd08299 alcohol_DH_class_I_II_ 91.5 2.7 5.9E-05 38.0 11.1 105 36-153 186-294 (373)
379 TIGR02080 O_succ_thio_ly O-suc 91.4 3.6 7.8E-05 37.8 11.9 130 21-155 46-177 (382)
380 PRK06234 methionine gamma-lyas 91.4 8.3 0.00018 35.5 14.3 128 22-155 60-192 (400)
381 cd00614 CGS_like CGS_like: Cys 91.4 3.9 8.5E-05 37.0 12.0 129 22-155 36-166 (369)
382 PRK00066 ldh L-lactate dehydro 91.3 6.4 0.00014 35.3 13.1 103 40-152 5-124 (315)
383 PRK07688 thiamine/molybdopteri 91.3 2.3 5E-05 38.7 10.3 80 40-122 23-126 (339)
384 COG0079 HisC Histidinol-phosph 91.3 9.5 0.00021 34.9 14.4 136 11-154 42-187 (356)
385 PRK08248 O-acetylhomoserine am 91.3 3.4 7.3E-05 38.7 11.7 126 21-154 59-189 (431)
386 COG2130 Putative NADP-dependen 91.2 2.8 6.1E-05 38.0 10.4 103 34-149 144-248 (340)
387 KOG0053 Cystathionine beta-lya 91.2 4.5 9.7E-05 37.9 12.1 129 22-155 73-203 (409)
388 TIGR01328 met_gam_lyase methio 91.2 4.5 9.7E-05 37.2 12.2 124 21-155 54-185 (391)
389 cd00300 LDH_like L-lactate deh 91.1 4.1 8.9E-05 36.2 11.6 98 45-152 2-117 (300)
390 PRK06176 cystathionine gamma-s 91.1 3.4 7.5E-05 37.9 11.4 126 21-155 45-175 (380)
391 TIGR00675 dcm DNA-methyltransf 91.0 1.3 2.9E-05 39.6 8.3 94 44-153 1-110 (315)
392 PRK05939 hypothetical protein; 90.9 6.2 0.00013 36.5 12.9 128 22-154 43-171 (397)
393 PRK06249 2-dehydropantoate 2-r 90.8 2.7 5.9E-05 37.3 10.2 102 41-153 5-109 (313)
394 cd05285 sorbitol_DH Sorbitol d 90.8 4.6 0.0001 35.7 11.6 47 36-86 158-205 (343)
395 cd05292 LDH_2 A subgroup of L- 90.7 7.1 0.00015 34.8 12.8 99 43-151 2-117 (308)
396 TIGR01470 cysG_Nterm siroheme 90.7 6.1 0.00013 33.2 11.8 84 40-136 8-92 (205)
397 PRK07050 cystathionine beta-ly 90.7 6.7 0.00015 36.1 13.0 132 21-156 60-192 (394)
398 cd08261 Zn_ADH7 Alcohol dehydr 90.7 5.9 0.00013 34.7 12.2 100 36-149 155-256 (337)
399 TIGR03018 pepcterm_TyrKin exop 90.7 3.7 8.1E-05 34.1 10.3 40 41-81 35-78 (207)
400 cd08276 MDR7 Medium chain dehy 90.7 4.5 9.8E-05 34.9 11.3 97 37-148 157-256 (336)
401 cd05291 HicDH_like L-2-hydroxy 90.6 7.9 0.00017 34.3 13.0 99 43-151 2-118 (306)
402 TIGR02356 adenyl_thiF thiazole 90.6 2.9 6.3E-05 34.9 9.7 81 40-122 20-121 (202)
403 COG2961 ComJ Protein involved 90.5 3.8 8.2E-05 36.1 10.3 123 23-155 72-200 (279)
404 PRK08133 O-succinylhomoserine 90.5 5.7 0.00012 36.5 12.3 125 22-154 57-186 (390)
405 TIGR01326 OAH_OAS_sulfhy OAH/O 90.5 6.2 0.00013 36.6 12.6 127 21-155 52-183 (418)
406 cd05286 QOR2 Quinone oxidoredu 90.5 4.9 0.00011 34.0 11.2 99 35-148 131-232 (320)
407 PLN02650 dihydroflavonol-4-red 90.5 1.1 2.3E-05 40.1 7.3 78 40-120 4-85 (351)
408 TIGR00959 ffh signal recogniti 90.4 2.3 4.9E-05 40.1 9.7 108 41-152 99-223 (428)
409 PLN03209 translocon at the inn 90.4 3.7 8E-05 40.2 11.3 82 37-121 76-168 (576)
410 PF02153 PDH: Prephenate dehyd 90.4 0.53 1.1E-05 40.9 5.1 73 67-156 11-83 (258)
411 COG5459 Predicted rRNA methyla 90.3 0.31 6.7E-06 44.9 3.7 135 7-150 80-224 (484)
412 PRK07503 methionine gamma-lyas 90.3 5.2 0.00011 36.9 12.0 125 22-155 61-191 (403)
413 PLN02427 UDP-apiose/xylose syn 90.3 1 2.2E-05 40.9 7.1 79 39-120 12-94 (386)
414 cd05288 PGDH Prostaglandin deh 90.2 5 0.00011 34.8 11.2 98 38-149 143-242 (329)
415 PRK06084 O-acetylhomoserine am 90.2 4.1 8.9E-05 38.0 11.2 127 21-155 53-184 (425)
416 cd08260 Zn_ADH6 Alcohol dehydr 90.2 4.4 9.6E-05 35.7 11.0 99 37-149 162-262 (345)
417 COG1004 Ugd Predicted UDP-gluc 90.1 0.88 1.9E-05 42.4 6.5 102 43-156 2-125 (414)
418 cd08255 2-desacetyl-2-hydroxye 90.1 5.8 0.00013 33.6 11.4 95 36-149 93-188 (277)
419 cd08263 Zn_ADH10 Alcohol dehyd 90.1 3.2 6.9E-05 37.1 10.1 97 39-149 186-285 (367)
420 cd00757 ThiF_MoeB_HesA_family 90.1 3.2 7E-05 35.2 9.6 81 40-122 20-121 (228)
421 PRK10037 cell division protein 90.1 2.6 5.6E-05 36.1 9.1 30 50-80 11-42 (250)
422 TIGR01425 SRP54_euk signal rec 90.1 3 6.6E-05 39.3 10.2 108 41-150 100-221 (429)
423 cd01078 NAD_bind_H4MPT_DH NADP 90.1 4.9 0.00011 32.9 10.5 123 39-174 26-154 (194)
424 TIGR02819 fdhA_non_GSH formald 90.1 8.6 0.00019 35.3 13.1 105 37-153 182-301 (393)
425 PRK11889 flhF flagellar biosyn 90.0 2.6 5.7E-05 39.6 9.6 136 40-180 240-390 (436)
426 cd05279 Zn_ADH1 Liver alcohol 90.0 4.9 0.00011 36.1 11.3 99 37-149 180-283 (365)
427 PRK15181 Vi polysaccharide bio 90.0 0.86 1.9E-05 40.8 6.3 80 39-121 13-99 (348)
428 TIGR01329 cysta_beta_ly_E cyst 90.0 6.6 0.00014 35.9 12.2 123 22-154 43-171 (378)
429 PRK07102 short chain dehydroge 89.9 1.6 3.5E-05 36.4 7.6 77 42-121 2-85 (243)
430 cd01492 Aos1_SUMO Ubiquitin ac 89.9 3.3 7.1E-05 34.6 9.3 92 40-135 20-131 (197)
431 cd08256 Zn_ADH2 Alcohol dehydr 89.8 3.7 7.9E-05 36.4 10.2 103 37-153 171-276 (350)
432 cd05283 CAD1 Cinnamyl alcohol 89.8 5.8 0.00012 35.0 11.4 95 39-149 168-262 (337)
433 CHL00175 minD septum-site dete 89.7 2.6 5.6E-05 36.6 8.9 37 42-79 16-55 (281)
434 cd08291 ETR_like_1 2-enoyl thi 89.6 5.8 0.00013 34.7 11.2 95 41-150 143-241 (324)
435 PRK07326 short chain dehydroge 89.6 4.6 9.9E-05 33.3 10.1 77 41-121 6-91 (237)
436 COG1893 ApbA Ketopantoate redu 89.5 3.5 7.5E-05 37.0 9.8 96 43-153 2-104 (307)
437 PRK13869 plasmid-partitioning 89.5 5.2 0.00011 37.2 11.3 37 43-80 122-162 (405)
438 PRK09496 trkA potassium transp 89.5 5.3 0.00011 36.9 11.3 74 41-122 231-307 (453)
439 TIGR00692 tdh L-threonine 3-de 89.4 10 0.00023 33.3 12.7 98 38-149 159-259 (340)
440 PRK08776 cystathionine gamma-s 89.4 8.5 0.00018 35.7 12.5 127 21-155 55-186 (405)
441 PRK05597 molybdopterin biosynt 89.3 3.9 8.4E-05 37.4 10.1 80 40-122 27-128 (355)
442 KOG2651 rRNA adenine N-6-methy 89.1 1.2 2.6E-05 41.4 6.6 54 28-86 141-194 (476)
443 PLN02494 adenosylhomocysteinas 89.1 5.4 0.00012 38.1 11.1 89 39-150 252-340 (477)
444 PF00072 Response_reg: Respons 89.1 3.8 8.3E-05 29.4 8.2 76 70-149 1-77 (112)
445 PRK12429 3-hydroxybutyrate deh 89.0 3 6.5E-05 34.8 8.6 79 40-121 3-90 (258)
446 cd02040 NifH NifH gene encodes 88.9 1.9 4.1E-05 36.9 7.4 37 43-80 3-41 (270)
447 PRK05786 fabG 3-ketoacyl-(acyl 88.8 8 0.00017 31.9 11.0 79 40-122 4-91 (238)
448 TIGR01963 PHB_DH 3-hydroxybuty 88.8 2.2 4.7E-05 35.6 7.6 77 42-121 2-87 (255)
449 PRK07666 fabG 3-ketoacyl-(acyl 88.7 3.1 6.7E-05 34.6 8.4 79 40-121 6-93 (239)
450 cd08245 CAD Cinnamyl alcohol d 88.7 10 0.00023 32.9 12.1 96 38-149 160-255 (330)
451 cd01488 Uba3_RUB Ubiquitin act 88.7 3.6 7.8E-05 36.8 9.2 87 43-133 1-107 (291)
452 PRK12826 3-ketoacyl-(acyl-carr 88.7 2.3 5E-05 35.3 7.6 80 40-122 5-93 (251)
453 PRK05808 3-hydroxybutyryl-CoA 88.6 1.5 3.2E-05 38.3 6.6 98 42-153 4-119 (282)
454 cd05293 LDH_1 A subgroup of L- 88.6 13 0.00027 33.5 12.7 102 41-152 3-122 (312)
455 PRK08306 dipicolinate synthase 88.6 6.7 0.00014 34.9 10.9 95 40-156 151-245 (296)
456 TIGR01325 O_suc_HS_sulf O-succ 88.6 9 0.00019 35.0 12.1 124 22-154 50-179 (380)
457 PRK05476 S-adenosyl-L-homocyst 88.6 6.4 0.00014 37.0 11.2 115 40-178 211-341 (425)
458 PF00448 SRP54: SRP54-type pro 88.6 2.3 5.1E-05 35.5 7.6 80 41-122 1-93 (196)
459 PRK08655 prephenate dehydrogen 88.6 3 6.6E-05 39.1 9.1 90 43-152 2-92 (437)
460 PRK09260 3-hydroxybutyryl-CoA 88.6 2.2 4.8E-05 37.3 7.7 96 42-149 2-115 (288)
461 cd08231 MDR_TM0436_like Hypoth 88.5 6.2 0.00013 35.1 10.8 98 40-151 177-280 (361)
462 PRK06767 methionine gamma-lyas 88.5 8.4 0.00018 35.2 11.8 128 22-154 57-186 (386)
463 cd08292 ETR_like_2 2-enoyl thi 88.5 10 0.00022 32.8 11.8 99 36-149 135-236 (324)
464 PRK07504 O-succinylhomoserine 88.5 7.3 0.00016 35.9 11.5 123 22-155 61-191 (398)
465 cd08240 6_hydroxyhexanoate_dh_ 88.5 5.9 0.00013 35.0 10.5 94 40-150 175-273 (350)
466 cd02037 MRP-like MRP (Multiple 88.4 0.97 2.1E-05 36.2 5.0 66 50-122 9-77 (169)
467 PRK08134 O-acetylhomoserine am 88.4 21 0.00046 33.4 14.6 123 22-154 60-189 (433)
468 PRK13771 putative alcohol dehy 88.4 4.9 0.00011 35.1 9.9 94 37-149 159-253 (334)
469 PRK05613 O-acetylhomoserine am 88.4 22 0.00048 33.4 14.8 125 22-155 65-196 (437)
470 cd08289 MDR_yhfp_like Yhfp put 88.3 9.8 0.00021 32.9 11.7 94 41-150 147-242 (326)
471 PRK09496 trkA potassium transp 88.3 6 0.00013 36.5 10.8 71 43-122 2-75 (453)
472 PLN02989 cinnamyl-alcohol dehy 88.3 2.1 4.5E-05 37.6 7.4 78 41-121 5-86 (325)
473 PRK07417 arogenate dehydrogena 88.3 2.8 6.1E-05 36.6 8.2 90 43-152 2-91 (279)
474 PRK08945 putative oxoacyl-(acy 88.3 2.7 5.8E-05 35.2 7.8 80 39-121 10-101 (247)
475 PRK07454 short chain dehydroge 88.1 4.2 9.2E-05 33.8 8.9 79 40-121 5-92 (241)
476 PRK14974 cell division protein 88.1 4.1 9E-05 37.1 9.4 134 40-180 139-292 (336)
477 PRK06949 short chain dehydroge 88.1 4.3 9.4E-05 33.9 9.0 79 40-121 8-95 (258)
478 PLN02242 methionine gamma-lyas 88.1 11 0.00023 35.2 12.4 126 22-155 72-204 (418)
479 KOG3045 Predicted RNA methylas 88.1 5.9 0.00013 35.3 9.8 119 9-155 148-268 (325)
480 cd01487 E1_ThiF_like E1_ThiF_l 88.0 7.5 0.00016 31.7 10.1 73 43-119 1-95 (174)
481 PRK05994 O-acetylhomoserine am 88.0 10 0.00022 35.4 12.1 124 22-154 59-188 (427)
482 KOG2198 tRNA cytosine-5-methyl 87.9 1.3 2.8E-05 40.8 5.9 92 29-122 143-246 (375)
483 PRK08217 fabG 3-ketoacyl-(acyl 87.8 4.2 9.1E-05 33.7 8.7 79 40-121 4-91 (253)
484 PRK06153 hypothetical protein; 87.6 7 0.00015 36.5 10.6 97 36-137 171-290 (393)
485 PRK06194 hypothetical protein; 87.6 4.1 8.8E-05 34.9 8.7 80 40-122 5-93 (287)
486 PLN02353 probable UDP-glucose 87.6 5.4 0.00012 38.0 10.1 102 43-156 3-132 (473)
487 PTZ00117 malate dehydrogenase; 87.6 10 0.00022 34.1 11.5 101 40-152 4-124 (319)
488 PRK11524 putative methyltransf 87.6 1.3 2.7E-05 39.1 5.6 55 29-89 195-251 (284)
489 PRK06522 2-dehydropantoate 2-r 87.5 6 0.00013 34.3 9.8 97 43-152 2-102 (304)
490 KOG0023 Alcohol dehydrogenase, 87.5 3.5 7.7E-05 37.6 8.3 47 39-89 180-226 (360)
491 PLN02986 cinnamyl-alcohol dehy 87.5 2.2 4.9E-05 37.4 7.1 78 41-121 5-86 (322)
492 PRK06223 malate dehydrogenase; 87.4 16 0.00034 32.2 12.5 100 42-152 3-121 (307)
493 cd05213 NAD_bind_Glutamyl_tRNA 87.3 17 0.00036 32.4 12.7 99 39-155 176-276 (311)
494 PLN02602 lactate dehydrogenase 87.3 14 0.00031 33.8 12.4 101 42-152 38-156 (350)
495 PLN02545 3-hydroxybutyryl-CoA 87.3 2.9 6.3E-05 36.7 7.7 95 42-149 5-117 (295)
496 PRK09291 short chain dehydroge 87.3 4.2 9E-05 34.0 8.4 77 42-121 3-82 (257)
497 PRK06914 short chain dehydroge 87.2 4.2 9E-05 34.7 8.5 78 41-121 3-90 (280)
498 TIGR00936 ahcY adenosylhomocys 87.2 9.5 0.00021 35.7 11.4 88 39-150 193-281 (406)
499 PRK12921 2-dehydropantoate 2-r 87.2 7.5 0.00016 33.8 10.3 99 43-152 2-104 (305)
500 PRK08293 3-hydroxybutyryl-CoA 87.2 6.1 0.00013 34.6 9.7 99 42-153 4-121 (287)
No 1
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=100.00 E-value=3.1e-57 Score=379.98 Aligned_cols=198 Identities=55% Similarity=0.859 Sum_probs=175.3
Q ss_pred CCChhhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCC-chHHHHHHHHHHcCCCCcEEEEEeCCchhHH
Q 042616 3 SWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSS-IAVSRTLALVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 3 ~w~~e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg-~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
+||||+|+||||+|||+|+...+|+++|||++||+++|+++|||++++ +...+|+.||.|+++|+||++||.++ ++..
T Consensus 4 ~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~-~~~~ 82 (218)
T PF07279_consen 4 VWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPD-EQSL 82 (218)
T ss_pred eeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCC-hhhH
Confidence 799999999999999999999999999999999999999999999863 34578999999999999999999999 6666
Q ss_pred HHHHHHhc--ccCCcEEEEEcch-hhhhhhcCCCccEEEEcCCCCCccHH-HHHHHHHhhcCCCCCCEEEEEecCCCCC-
Q 042616 82 DASKKSLG--RYANCIEFVKGDA-QKLLMGDYRGADFVLIDCNIDIDGHK-NVFRAAKESVMHGSGAGVIVGYNALPKG- 156 (220)
Q Consensus 82 ~~Ar~~l~--g~~~~Ve~v~gda-~~~L~~~~~~~D~VfiD~~k~~~~y~-~~l~~l~~~~~L~~~Ggviv~dNv~~~g- 156 (220)
...++.+. ++.+.+||+.|++ +++++. ...+||+++||.. ++|. ++|+.+... |+|+|||++|++.++
T Consensus 83 ~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-~~~iDF~vVDc~~--~d~~~~vl~~~~~~----~~GaVVV~~Na~~r~~ 155 (218)
T PF07279_consen 83 SEYKKALGEAGLSDVVEFVVGEAPEEVMPG-LKGIDFVVVDCKR--EDFAARVLRAAKLS----PRGAVVVCYNAFSRST 155 (218)
T ss_pred HHHHHHHhhccccccceEEecCCHHHHHhh-ccCCCEEEEeCCc--hhHHHHHHHHhccC----CCceEEEEeccccCCc
Confidence 66666665 7777899999985 567766 5789999999999 9998 999988754 789999999999854
Q ss_pred ---Ccc-------ceEEEeeecCCcEEEEEEeecCC-CCCCCcCcCceEecccCCCceeEEEe
Q 042616 157 ---SWR-------GYKTHFLPIGEGLLVTRIGENSD-VGGGRKRSRWVVTVDKCTGEEHVFRV 208 (220)
Q Consensus 157 ---~~~-------~~~s~~lPig~Gl~v~~~~~~~~-~~~~~~~~~w~~~~d~~~~~~~~~~~ 208 (220)
+|+ .++|++||||+||+|+++..+++ ..+++++||||+|||||||||||||+
T Consensus 156 ~~~~w~~~~~~~r~Vrsv~LPIG~GleVt~ig~~~~~~~~~~~~srWi~~vD~~sGEeHv~R~ 218 (218)
T PF07279_consen 156 NGFSWRSVLRGRRVVRSVFLPIGKGLEVTRIGASGGSNSSRRKKSRWIKHVDQCSGEEHVFRR 218 (218)
T ss_pred CCccHHHhcCCCCceeEEEeccCCCeEEEEEeecCCCCCCCCCCccceEeeccCCCceeeecC
Confidence 676 48999999999999999998765 33567999999999999999999995
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=5e-37 Score=259.31 Aligned_cols=150 Identities=24% Similarity=0.350 Sum_probs=136.2
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.+.++|++|+||..|++..+|++||||||+ +||||+|||.++++ +|+|+|||.| ++.++.|+++++ |+.++|+++
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~-~GySal~la~~l~~-~g~i~tiE~~-~~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTRPKRVLEIGTF-TGYSALWLAEALPE-DGKITTIEID-PERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-SEEEEESTT-TSHHHHHHHHTSTT-TSEEEEEESS-HHHHHHHHHHHHHTTGGGGEEEE
T ss_pred CCccCHHHHHHHHHHHHhcCCceEEEeccc-cccHHHHHHHhhcc-cceEEEecCc-HHHHHHHHHHHHhcCCCCcEEEE
Confidence 467899999999999999999999999996 99999999999987 8999999999 999999999998 888899999
Q ss_pred Ecchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 99 KGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 99 ~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
+|||.++|+.+ .++|||||||++| .+|.+||+.+.++ |+| ||+||+||++++|.
T Consensus 103 ~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~~~~~~l--l~~-ggvii~DN~l~~G~V~~~~~~~~~~~~ir~ 177 (205)
T PF01596_consen 103 EGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYFEKALPL--LRP-GGVIIADNVLWRGSVADPDDEDPKTVAIRE 177 (205)
T ss_dssp ES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHHHHHHHH--EEE-EEEEEEETTTGGGGGGSTTGGSHHHHHHHH
T ss_pred EeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHHHHHhhh--ccC-CeEEEEccccccceecCccchhhhHHHHHH
Confidence 99999999876 2479999999999 9999999999998 875 99999999999881
Q ss_pred cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|++++||+|+|+.|++|+
T Consensus 178 f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 178 FNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 22 7999999999999999985
No 3
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=9.9e-35 Score=251.47 Aligned_cols=149 Identities=22% Similarity=0.236 Sum_probs=137.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.++|++++||..|++..+|++||||||+ +||||+|||.++++ +|+|+|||.+ ++.++.|+++++ |+.++|++++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~-~GySal~la~al~~-~g~v~tiE~~-~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVY-TGYSLLATALALPE-DGKILAMDIN-RENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCC-CCEEEEEeCC-HHHHHHHHHHHHHCCCCCceEEEe
Confidence 45689999999999999999999999995 99999999999987 8999999999 999999999997 8889999999
Q ss_pred cchhhhhhhcC------CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 100 GDAQKLLMGDY------RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 100 gda~~~L~~~~------~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
|++.+.|+.+. ++|||||+|++| .+|.+||+.+.++ |+| ||+||+||++|+|.
T Consensus 138 G~a~e~L~~l~~~~~~~~~fD~iFiDadK--~~Y~~y~~~~l~l--l~~-GGviv~DNvl~~G~v~~~~~~~~~~~~~~~ 212 (247)
T PLN02589 138 GPALPVLDQMIEDGKYHGTFDFIFVDADK--DNYINYHKRLIDL--VKV-GGVIGYDNTLWNGSVVAPPDAPMRKYVRYY 212 (247)
T ss_pred ccHHHHHHHHHhccccCCcccEEEecCCH--HHhHHHHHHHHHh--cCC-CeEEEEcCCCCCCcccCccccchhhhHHHH
Confidence 99999998862 589999999999 9999999999998 875 99999999999871
Q ss_pred ------cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 ------WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ------~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|+++++|+|||+.|++|.
T Consensus 213 ~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 213 RDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 11 6999999999999999986
No 4
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=9.6e-35 Score=246.82 Aligned_cols=149 Identities=25% Similarity=0.337 Sum_probs=137.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+++.|++++||..|++..++++||||||+ .||||+|||.+++. +|++||||.| +++++.|++|++ |+.++|+++.
T Consensus 41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~-~GySal~mA~~l~~-~g~l~tiE~~-~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 41 PIIDPETGALLRLLARLSGPKRILEIGTA-IGYSALWMALALPD-DGRLTTIERD-EERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred CCCChhHHHHHHHHHHhcCCceEEEeecc-cCHHHHHHHhhCCC-CCeEEEEeCC-HHHHHHHHHHHHHcCCcceEEEEe
Confidence 45669999999999999999999999995 99999999999997 8899999999 999999999997 8888899999
Q ss_pred -cchhhhhhh-cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC----C--------------cc
Q 042616 100 -GDAQKLLMG-DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG----S--------------WR 159 (220)
Q Consensus 100 -gda~~~L~~-~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g----~--------------~~ 159 (220)
||+.+.+.. ..++|||||+|++| .+|+++|+.+.++ |+| ||+||+||++++| . +.
T Consensus 118 ~gdal~~l~~~~~~~fDliFIDadK--~~yp~~le~~~~l--Lr~-GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFIDADK--ADYPEYLERALPL--LRP-GGLIVADNVLFGGRVADPSIRDARTQVRGVRDFN 192 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEeCCh--hhCHHHHHHHHHH--hCC-CcEEEEeecccCCccCCccchhHHHHHHHHHHHH
Confidence 699999975 46899999999999 9999999999999 876 9999999999987 1 11
Q ss_pred -------ceEEEeeecCCcEEEEEEe
Q 042616 160 -------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 160 -------~~~s~~lPig~Gl~v~~~~ 178 (220)
++.++++|+|||+.|+++.
T Consensus 193 ~~~~~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 193 DYLLEDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred HHHhhCcCceeEEEecCCceEEEeec
Confidence 7999999999999999986
No 5
>PLN02476 O-methyltransferase
Probab=100.00 E-value=4.2e-34 Score=250.96 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=138.5
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.++++|++++||..|++..+|++||||||+ +||||+|||.++++ +|+|+|+|.+ ++.++.|++|++ |+.++|+++
T Consensus 99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~-tGySal~lA~al~~-~G~V~TiE~d-~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 99 QMQVSPDQAQLLAMLVQILGAERCIEVGVY-TGYSSLAVALVLPE-SGCLVACERD-SNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred ccccCHHHHHHHHHHHHhcCCCeEEEecCC-CCHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEE
Confidence 467899999999999999999999999996 99999999999987 8999999999 999999999997 888899999
Q ss_pred Ecchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC----------------
Q 042616 99 KGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS---------------- 157 (220)
Q Consensus 99 ~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~---------------- 157 (220)
.||+.+.|+.+ .++|||||+|++| .+|.+|++.+.++ |+| ||+||+||++++|.
T Consensus 176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~K--~~Y~~y~e~~l~l--L~~-GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~ 250 (278)
T PLN02476 176 HGLAAESLKSMIQNGEGSSYDFAFVDADK--RMYQDYFELLLQL--VRV-GGVIVMDNVLWHGRVADPLVNDAKTISIRN 250 (278)
T ss_pred EcCHHHHHHHHHhcccCCCCCEEEECCCH--HHHHHHHHHHHHh--cCC-CcEEEEecCccCCcccCcccCCHHHHHHHH
Confidence 99999999875 2589999999999 9999999999998 875 99999999999982
Q ss_pred cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|.++++|+|||++|++|+
T Consensus 251 fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 251 FNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 22 7999999999999999974
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.98 E-value=2.1e-31 Score=228.97 Aligned_cols=149 Identities=19% Similarity=0.148 Sum_probs=136.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
+.++|++++||..|++..++++||||||| +||++++||.+++. +|+|+++|.+ +++++.|++|++ ++.++|++++
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~-~g~v~tiD~d-~~~~~~A~~n~~~~gl~~~i~~~~ 126 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVF-TGYSLLTTALALPE-DGRITAIDID-KEAYEVGLEFIKKAGVDHKINFIQ 126 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCc-ccHHHHHHHHhCCC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEE
Confidence 37799999999999999999999999996 99999999999876 8999999999 999999999997 7878999999
Q ss_pred cchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC-----------------
Q 042616 100 GDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS----------------- 157 (220)
Q Consensus 100 gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~----------------- 157 (220)
||+.+.|+.+ .++|||||+|+++ ..|.++++.+.++ |+| ||+|++||++++|.
T Consensus 127 gda~~~L~~l~~~~~~~~fD~VfiDa~k--~~y~~~~~~~~~l--l~~-GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~ 201 (234)
T PLN02781 127 SDALSALDQLLNNDPKPEFDFAFVDADK--PNYVHFHEQLLKL--VKV-GGIIAFDNTLWFGFVAQEEDEVPEHMRAYRK 201 (234)
T ss_pred ccHHHHHHHHHhCCCCCCCCEEEECCCH--HHHHHHHHHHHHh--cCC-CeEEEEEcCCcCCeecCcccccchhhhHHHH
Confidence 9999998765 3589999999999 9999999999998 876 99999999998771
Q ss_pred ----cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 ----WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 ----~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
|+ +|.++++|+|||+.|+++.
T Consensus 202 ~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 202 ALLEFNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 11 7999999999999999985
No 7
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=8.5e-30 Score=215.86 Aligned_cols=151 Identities=25% Similarity=0.274 Sum_probs=138.5
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..+.+.|++++|++++++..+|++.||||+ ++|||++..|.++++ +|+|+++|.| ++.++.+.+..+ |..++|++
T Consensus 53 ~~m~v~~d~g~fl~~li~~~~ak~~lelGv-fTGySaL~~Alalp~-dGrv~a~eid-~~~~~~~~~~~k~agv~~KI~~ 129 (237)
T KOG1663|consen 53 SEMLVGPDKGQFLQMLIRLLNAKRTLELGV-FTGYSALAVALALPE-DGRVVAIEID-ADAYEIGLELVKLAGVDHKITF 129 (237)
T ss_pred cceecChHHHHHHHHHHHHhCCceEEEEec-ccCHHHHHHHHhcCC-CceEEEEecC-hHHHHHhHHHHHhccccceeee
Confidence 457899999999999999999999999998 599999999999998 9999999999 999999999887 88899999
Q ss_pred EEcchhhhhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC---------------
Q 042616 98 VKGDAQKLLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS--------------- 157 (220)
Q Consensus 98 v~gda~~~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~--------------- 157 (220)
++|++.+.|+++ .+.|||+|+|++| .+|.++++.+.++ |++ ||+|++||++++|.
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDadK--~nY~~y~e~~l~L--lr~-GGvi~~DNvl~~G~v~~p~~~~~~~~~~~ 204 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDADK--DNYSNYYERLLRL--LRV-GGVIVVDNVLWPGVVADPDVNTPVRGRSI 204 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccch--HHHHHHHHHHHhh--ccc-ccEEEEeccccCCcccCcccCCCcchhhh
Confidence 999999998877 3679999999999 9999999999998 875 99999999999881
Q ss_pred -----cc-------ceEEEeeecCCcEEEEEEe
Q 042616 158 -----WR-------GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 158 -----~~-------~~~s~~lPig~Gl~v~~~~ 178 (220)
++ ++..+.+|+|+|+.++++.
T Consensus 205 r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 205 REALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred hhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 11 6899999999999999863
No 8
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.1e-15 Score=131.94 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=119.9
Q ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh
Q 042616 9 ATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL 88 (220)
Q Consensus 9 a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l 88 (220)
....|+..++.+.+++.|.-+.++-+.+...+..+|+|.||| +|..|..||.+..+ .|+|+++|.+ +++++.|++|+
T Consensus 63 ~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtG-SG~lt~~La~~vg~-~G~v~tyE~r-~d~~k~A~~Nl 139 (256)
T COG2519 63 TPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTG-SGALTAYLARAVGP-EGHVTTYEIR-EDFAKTARENL 139 (256)
T ss_pred CHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccC-chHHHHHHHHhhCC-CceEEEEEec-HHHHHHHHHHH
Confidence 345688888998889999999999999999999999999997 89999999999887 8999999999 99999999999
Q ss_pred c--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 89 G--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 89 ~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+ ++.++|++..+|..+.... ..||.||+|-+. ..++++.+... |+| ||.+++++...
T Consensus 140 ~~~~l~d~v~~~~~Dv~~~~~~--~~vDav~LDmp~----PW~~le~~~~~--Lkp-gg~~~~y~P~v 198 (256)
T COG2519 140 SEFGLGDRVTLKLGDVREGIDE--EDVDAVFLDLPD----PWNVLEHVSDA--LKP-GGVVVVYSPTV 198 (256)
T ss_pred HHhccccceEEEeccccccccc--cccCEEEEcCCC----hHHHHHHHHHH--hCC-CcEEEEEcCCH
Confidence 8 8878899999999987643 599999999876 67889999998 886 99999998774
No 9
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.6e-16 Score=131.92 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=101.0
Q ss_pred hHHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH
Q 042616 9 ATKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 9 a~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar 85 (220)
+..||.|+ +.. ++.+..|.....+-.++...+..+||||||| +||.|..||+- .++|++||.+ ++.++.||
T Consensus 38 ~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l----~~~V~siEr~-~~L~~~A~ 111 (209)
T COG2518 38 KHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTG-SGYQAAVLARL----VGRVVSIERI-EELAEQAR 111 (209)
T ss_pred hcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCC-chHHHHHHHHH----hCeEEEEEEc-HHHHHHHH
Confidence 67788888 333 5678889777666677789999999999997 99999999986 5699999999 99999999
Q ss_pred HHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 86 KSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 86 ~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++ |+ .+|.+++||...-.+. ..+||.|++.+.- ... ..++++|+ + ||.+|+
T Consensus 112 ~~L~~lg~-~nV~v~~gDG~~G~~~-~aPyD~I~Vtaaa--~~vP~~Ll~QL~------~-gGrlv~ 167 (209)
T COG2518 112 RNLETLGY-ENVTVRHGDGSKGWPE-EAPYDRIIVTAAA--PEVPEALLDQLK------P-GGRLVI 167 (209)
T ss_pred HHHHHcCC-CceEEEECCcccCCCC-CCCcCEEEEeecc--CCCCHHHHHhcc------c-CCEEEE
Confidence 9998 77 4599999999998876 6899999999988 554 44455444 4 776554
No 10
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=7.3e-15 Score=130.27 Aligned_cols=144 Identities=11% Similarity=0.123 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEEc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVKG 100 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~g 100 (220)
+.+-++++|+.+... ++++|+|||||..|+++++|+....+ +++++++|.| +++++.||++++ ++.++|+|.++
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p-~~~~~giD~d-~~ai~~Ar~~~~~~~gL~~rV~F~~~ 184 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLP-TTSFHNFDID-PSANDVARRLVSSDPDLSKRMFFHTA 184 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCC-CCEEEEEeCC-HHHHHHHHHHhhhccCccCCcEEEEC
Confidence 556778888888776 89999999998678999999877665 8999999999 999999999993 77788999999
Q ss_pred chhhhhhhcCCCccEEEEcC----CCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC--Ccc------------ceE
Q 042616 101 DAQKLLMGDYRGADFVLIDC----NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG--SWR------------GYK 162 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~----~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g--~~~------------~~~ 162 (220)
|+.+..+. .++||+||+++ ++ .++.++++.+.+. |+| ||+++.-.. +| .+. +..
T Consensus 185 Da~~~~~~-l~~FDlVF~~ALi~~dk--~~k~~vL~~l~~~--LkP-GG~Lvlr~~--~G~r~~LYp~v~~~~~~gf~~~ 256 (296)
T PLN03075 185 DVMDVTES-LKEYDVVFLAALVGMDK--EEKVKVIEHLGKH--MAP-GALLMLRSA--HGARAFLYPVVDPCDLRGFEVL 256 (296)
T ss_pred chhhcccc-cCCcCEEEEeccccccc--ccHHHHHHHHHHh--cCC-CcEEEEecc--cchHhhcCCCCChhhCCCeEEE
Confidence 99986433 46899999997 45 7899999999999 876 999998763 43 111 456
Q ss_pred EEeeecCC---cEEEEEEe
Q 042616 163 THFLPIGE---GLLVTRIG 178 (220)
Q Consensus 163 s~~lPig~---Gl~v~~~~ 178 (220)
+++.|.++ -+.++++.
T Consensus 257 ~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 257 SVFHPTDEVINSVIIARKP 275 (296)
T ss_pred EEECCCCCceeeEEEEEee
Confidence 77788776 34555554
No 11
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.62 E-value=2.9e-15 Score=126.82 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=102.6
Q ss_pred hHHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH
Q 042616 9 ATKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 9 a~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar 85 (220)
+..||.|. +.. ++.+..|....++..++...+..+||||||| +||.|..|+..+.. +++|+++|++ ++.++.|+
T Consensus 42 ~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~-~~~V~~vE~~-~~~~~~a~ 118 (212)
T PRK13942 42 EEYAYVDTPLEIGYGQTISAIHMVAIMCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGK-SGKVVTIERI-PELAEKAK 118 (212)
T ss_pred hhcCcCCCCccCCCCCEeCcHHHHHHHHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCC-CCEEEEEeCC-HHHHHHHH
Confidence 34577776 222 4567888888888888888889999999997 99999999988765 7899999999 99999999
Q ss_pred HHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 86 KSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 86 ~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++++ ++ ++|+++++|+.+..+. ..+||+|++++.. ..+. +.+.+. |+| ||.+++.
T Consensus 119 ~~l~~~g~-~~v~~~~gd~~~~~~~-~~~fD~I~~~~~~--~~~~---~~l~~~--Lkp-gG~lvi~ 175 (212)
T PRK13942 119 KTLKKLGY-DNVEVIVGDGTLGYEE-NAPYDRIYVTAAG--PDIP---KPLIEQ--LKD-GGIMVIP 175 (212)
T ss_pred HHHHHcCC-CCeEEEECCcccCCCc-CCCcCEEEECCCc--ccch---HHHHHh--hCC-CcEEEEE
Confidence 9997 55 6799999999876543 4789999999987 5554 345555 765 8877663
No 12
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.60 E-value=5.7e-16 Score=116.61 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=50.8
Q ss_pred EEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC-CCccEEEEcC
Q 042616 45 VMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY-RGADFVLIDC 120 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~ 120 (220)
|||||. .|+||++|++++++.+ +++++||+. +. .+.+++.++ ++.++++++.|+..+.++.+. .+||++|||+
T Consensus 1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~-~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPF-PG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp ---------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred Cccccc-cccccccccccccccccCCEEEEECC-Cc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 799995 9999999999998844 389999999 64 344555554 666789999999999998775 8999999999
Q ss_pred CCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 121 ~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++..+.....++.+.++ |+| ||+||+||+
T Consensus 78 ~H~~~~~~~dl~~~~~~--l~~-ggviv~dD~ 106 (106)
T PF13578_consen 78 DHSYEAVLRDLENALPR--LAP-GGVIVFDDY 106 (106)
T ss_dssp ---HHHHHHHHHHHGGG--EEE-EEEEEEE--
T ss_pred CCCHHHHHHHHHHHHHH--cCC-CeEEEEeCc
Confidence 97556668889999998 875 999999984
No 13
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=9.4e-15 Score=122.96 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=98.8
Q ss_pred HHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 10 TKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 10 ~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
..+|.|. ++. ++.+..|...+.+..++...+..+||||||| +|+.|..|+..++. +++|+++|.+ +++++.|++
T Consensus 39 ~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~G-sG~~~~~la~~~~~-~g~V~~iD~~-~~~~~~a~~ 115 (205)
T PRK13944 39 MMAYEDRPLPLFAGATISAPHMVAMMCELIEPRPGMKILEVGTG-SGYQAAVCAEAIER-RGKVYTVEIV-KELAIYAAQ 115 (205)
T ss_pred hcCccCCCcccCCCCEechHHHHHHHHHhcCCCCCCEEEEECcC-ccHHHHHHHHhcCC-CCEEEEEeCC-HHHHHHHHH
Confidence 4566665 332 3345566665555555566677899999997 99999999998765 6899999999 999999999
Q ss_pred Hhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 87 SLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 87 ~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++ ++.++++++++|+.+.++. ..+||.|++++.. ..++ +.+.+. |+| ||.+++.
T Consensus 116 ~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~--~~~~---~~l~~~--L~~-gG~lvi~ 172 (205)
T PRK13944 116 NIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA--STIP---SALVRQ--LKD-GGVLVIP 172 (205)
T ss_pred HHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc--chhh---HHHHHh--cCc-CcEEEEE
Confidence 997 6656799999999887654 4689999999887 5444 455666 765 8887774
No 14
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.58 E-value=1.7e-14 Score=125.10 Aligned_cols=133 Identities=15% Similarity=0.054 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-
Q 042616 11 KAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG- 89 (220)
Q Consensus 11 ~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~- 89 (220)
+-|...|+..-.++-|.-+.+|-..+...+..+|||.||| +|..|++|+.++.+ .|+|++.|.+ +++++.|++|++
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtG-SG~lt~~l~r~v~p-~G~v~t~E~~-~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTG-SGSLTHALARAVGP-TGHVYTYEFR-EDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--T-TSHHHHHHHHHHTT-TSEEEEEESS-HHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCC-cHHHHHHHHHHhCC-CeEEEccccC-HHHHHHHHHHHHH
Confidence 3477778888888888888888889899999999999997 89999999999987 8999999999 999999999998
Q ss_pred -ccCCcEEEEEcchhh-hhh-hcCCCccEEEEcCCCCCccHHHHHHHHHhhcCC-CCCCEEEEEecCC
Q 042616 90 -RYANCIEFVKGDAQK-LLM-GDYRGADFVLIDCNIDIDGHKNVFRAAKESVMH-GSGAGVIVGYNAL 153 (220)
Q Consensus 90 -g~~~~Ve~v~gda~~-~L~-~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L-~~~Ggviv~dNv~ 153 (220)
++.++|++.++|..+ ..+ .+...+|.||+|-+. ..++++.+.+. | ++ ||.|++....
T Consensus 88 ~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~----Pw~~i~~~~~~--L~~~-gG~i~~fsP~ 148 (247)
T PF08704_consen 88 HGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPD----PWEAIPHAKRA--LKKP-GGRICCFSPC 148 (247)
T ss_dssp TTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSS----GGGGHHHHHHH--E-EE-EEEEEEEESS
T ss_pred cCCCCCceeEecceecccccccccCcccEEEEeCCC----HHHHHHHHHHH--HhcC-CceEEEECCC
Confidence 888899999999963 332 224689999999987 33556777776 6 44 9999998654
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.57 E-value=2.3e-14 Score=107.77 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+..+||||||| +|..+++|++..+ +.+|++||.+ +++++.|++++. +..++|+++++|+ .......++||+|+
T Consensus 1 p~~~vLDlGcG-~G~~~~~l~~~~~--~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCG-TGRLSIALARLFP--GARVVGVDIS-PEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTT-TSHHHHHHHHHHT--TSEEEEEESS-HHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCc-CCHHHHHHHhcCC--CCEEEEEeCC-HHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEE
Confidence 46789999997 9999999998433 7999999999 999999999993 6678999999999 44445467899999
Q ss_pred EcC-CC----CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDC-NI----DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~-~k----~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++. .. +.....++++.+.+. |+| ||+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~--L~p-gG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRL--LKP-GGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHH--EEE-EEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHh--cCC-CcEEEEE
Confidence 999 33 001224568999998 886 8888875
No 16
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.57 E-value=4.4e-15 Score=125.97 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=94.7
Q ss_pred hhHHHHHHH-Hhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHH
Q 042616 8 NATKAYLQA-LKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDAS 84 (220)
Q Consensus 8 ~a~~aY~~~-l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~A 84 (220)
....||.|+ ++. ++.+..|..-..+..++...+..+||||||| +||.|..||.-+.+ .|+|++||.+ +..++.|
T Consensus 37 ~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~-~g~Vv~vE~~-~~l~~~A 113 (209)
T PF01135_consen 37 FRDLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGP-VGRVVSVERD-PELAERA 113 (209)
T ss_dssp GGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHST-TEEEEEEESB-HHHHHHH
T ss_pred hhcCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCc-cceEEEECcc-HHHHHHH
Confidence 455778877 332 3456778775555555578899999999997 99999999998876 7899999999 9999999
Q ss_pred HHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 85 KKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 85 r~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++++ ++ .+|++++||+...++. ..+||.|++.+.. ...+ ..+.+. |++ ||.+|+-
T Consensus 114 ~~~l~~~~~-~nv~~~~gdg~~g~~~-~apfD~I~v~~a~--~~ip---~~l~~q--L~~-gGrLV~p 171 (209)
T PF01135_consen 114 RRNLARLGI-DNVEVVVGDGSEGWPE-EAPFDRIIVTAAV--PEIP---EALLEQ--LKP-GGRLVAP 171 (209)
T ss_dssp HHHHHHHTT-HSEEEEES-GGGTTGG-G-SEEEEEESSBB--SS-----HHHHHT--EEE-EEEEEEE
T ss_pred HHHHHHhcc-CceeEEEcchhhcccc-CCCcCEEEEeecc--chHH---HHHHHh--cCC-CcEEEEE
Confidence 99998 55 5899999999887765 5789999999988 5543 223333 444 8888874
No 17
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=2.2e-14 Score=121.22 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=94.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
+.+..|...+.+..++...+..+||||||| +|+.|+.|+...++ .++|++||.+ ++.++.|+++++ ++ ++++++
T Consensus 58 ~~~~~p~~~~~~~~~l~~~~~~~VLDiG~G-sG~~a~~la~~~~~-~g~V~~vD~~-~~~~~~A~~~~~~~g~-~~v~~~ 133 (215)
T TIGR00080 58 QTISAPHMVAMMTELLELKPGMKVLEIGTG-SGYQAAVLAEIVGR-DGLVVSIERI-PELAEKAERRLRKLGL-DNVIVI 133 (215)
T ss_pred CEechHHHHHHHHHHhCCCCcCEEEEECCC-ccHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHHHCCC-CCeEEE
Confidence 345667776666667778888999999997 99999999987665 7899999999 999999999997 66 689999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+.+.++. ..+||+|++++.. ..+. +.+.+. |+| ||.+++.
T Consensus 134 ~~d~~~~~~~-~~~fD~Ii~~~~~--~~~~---~~~~~~--L~~-gG~lv~~ 176 (215)
T TIGR00080 134 VGDGTQGWEP-LAPYDRIYVTAAG--PKIP---EALIDQ--LKE-GGILVMP 176 (215)
T ss_pred ECCcccCCcc-cCCCCEEEEcCCc--cccc---HHHHHh--cCc-CcEEEEE
Confidence 9999886643 4689999999877 5554 445566 665 8887764
No 18
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=9.5e-14 Score=115.22 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=96.5
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
+--|+.| +..+.++++||||| +|..|+-+|. +.+ .++|++||.| +++++..++|.+ ++ ++++++.|+|.+.|
T Consensus 24 al~ls~L-~~~~g~~l~DIGaG-tGsi~iE~a~-~~p-~~~v~AIe~~-~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 24 ALTLSKL-RPRPGDRLWDIGAG-TGSITIEWAL-AGP-SGRVIAIERD-EEALELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHhh-CCCCCCEEEEeCCC-ccHHHHHHHH-hCC-CceEEEEecC-HHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 4445555 67788999999997 9999999994 444 7999999999 999999999998 74 89999999999999
Q ss_pred hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 107 MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.+. .+|.|||.+.. .+..+++.+... |+| ||.||++=+..
T Consensus 98 ~~~~-~~daiFIGGg~---~i~~ile~~~~~--l~~-ggrlV~naitl 138 (187)
T COG2242 98 PDLP-SPDAIFIGGGG---NIEEILEAAWER--LKP-GGRLVANAITL 138 (187)
T ss_pred cCCC-CCCEEEECCCC---CHHHHHHHHHHH--cCc-CCeEEEEeecH
Confidence 8744 79999999985 789999999999 875 99999975543
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.55 E-value=1.2e-13 Score=115.41 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=93.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+...|||+||| +|+.++.++..+.+ +++|++||.+ +++++.|+++++ ++.++++++.+|+.+.++...+.||
T Consensus 37 ~~~~~~~vlDlG~G-tG~~s~~~a~~~~~-~~~v~avD~~-~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCG-TGSVTVEASLLVGE-TGKVYAVDKD-EKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCc-CCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 44567899999997 89999999887655 6899999999 999999999997 5457899999999988876557899
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+||+++.. ..+.++++.+.+. |+| ||.++.+.+..
T Consensus 114 ~V~~~~~~--~~~~~~l~~~~~~--Lkp-gG~lv~~~~~~ 148 (198)
T PRK00377 114 RIFIGGGS--EKLKEIISASWEI--IKK-GGRIVIDAILL 148 (198)
T ss_pred EEEECCCc--ccHHHHHHHHHHH--cCC-CcEEEEEeecH
Confidence 99998877 7889999999998 876 89888876543
No 20
>PRK04457 spermidine synthase; Provisional
Probab=99.52 E-value=3.3e-13 Score=117.95 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC
Q 042616 33 SALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 33 ~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~ 110 (220)
..++...++++|||||+| .|+++.+++...+ +.+|++||.| |+.++.|++++. +..++++++++|+.++++...
T Consensus 59 ~~l~~~~~~~~vL~IG~G-~G~l~~~l~~~~p--~~~v~~VEid-p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~ 134 (262)
T PRK04457 59 GFLLFNPRPQHILQIGLG-GGSLAKFIYTYLP--DTRQTAVEIN-PQVIAVARNHFELPENGERFEVIEADGAEYIAVHR 134 (262)
T ss_pred HHHhcCCCCCEEEEECCC-HhHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC
Confidence 344445578999999996 8999999998764 6899999999 999999999987 344789999999999987655
Q ss_pred CCccEEEEcCCCCCc-----cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDID-----GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~-----~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++||+||+|+..... ...++++.+.+. |+| ||++++.
T Consensus 135 ~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~--L~p-gGvlvin 176 (262)
T PRK04457 135 HSTDVILVDGFDGEGIIDALCTQPFFDDCRNA--LSS-DGIFVVN 176 (262)
T ss_pred CCCCEEEEeCCCCCCCccccCcHHHHHHHHHh--cCC-CcEEEEE
Confidence 789999999865111 137899999998 876 8888884
No 21
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.50 E-value=6.5e-13 Score=110.58 Aligned_cols=123 Identities=14% Similarity=0.102 Sum_probs=99.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+.++..++..+++...+...+..+|||+||| +|+.|++++...+ +++|++||.+ +++++.|+++++ ++ +++++
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G-~G~~~~~la~~~~--~~~V~~vD~s-~~~~~~a~~n~~~~~~-~~v~~ 94 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAG-TGTIPVEAGLLCP--KGRVIAIERD-EEVVNLIRRNCDRFGV-KNVEV 94 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHhCC-CCeEE
Confidence 3456677777777777677777899999997 9999999987543 5899999999 999999999997 55 57999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++|+.+.++.+...+|.+++|+.. ...++++.+.+. |+| ||.+++....
T Consensus 95 ~~~d~~~~~~~~~~~~d~v~~~~~~---~~~~~l~~~~~~--Lkp-gG~li~~~~~ 144 (196)
T PRK07402 95 IEGSAPECLAQLAPAPDRVCIEGGR---PIKEILQAVWQY--LKP-GGRLVATASS 144 (196)
T ss_pred EECchHHHHhhCCCCCCEEEEECCc---CHHHHHHHHHHh--cCC-CeEEEEEeec
Confidence 9999988665544567999998754 567889999998 876 8888877543
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.49 E-value=7.6e-13 Score=100.53 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=88.0
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCC
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
......+.++|||+||| +|..+..++...+ .++|+++|.+ +.+++.|+++++ ++ .+++++.+|+.+.++....
T Consensus 13 ~~~~~~~~~~vldlG~G-~G~~~~~l~~~~~--~~~v~~vD~s-~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAG-SGSITIEAARLVP--NGRVYAIERN-PEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHcCCCCCCEEEEeCCC-CCHHHHHHHHHCC--CceEEEEcCC-HHHHHHHHHHHHHhCC-CceEEEeccccccChhhcC
Confidence 33344556799999997 8999999998754 4899999999 999999999987 44 4799999998765544456
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+||+|+++... ..+.++++.+.+. |+| ||.+++.
T Consensus 88 ~~D~v~~~~~~--~~~~~~l~~~~~~--Lk~-gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSG--GLLQEILEAIWRR--LRP-GGRIVLN 121 (124)
T ss_pred CCCEEEECCcc--hhHHHHHHHHHHH--cCC-CCEEEEE
Confidence 89999999877 7788999999999 876 8887764
No 23
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.48 E-value=5.1e-13 Score=112.42 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=91.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
.+..|.....+..++...+..+|||+||| +|+.|..|+.. .++|++||.+ +++++.|+++++ ++ +++++++
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~G-sG~~t~~la~~----~~~v~~vd~~-~~~~~~a~~~~~~~~~-~~v~~~~ 132 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEIGTG-SGYQAAVLAHL----VRRVFSVERI-KTLQWEAKRRLKQLGL-HNVSVRH 132 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEECCC-ccHHHHHHHHH----hCEEEEEeCC-HHHHHHHHHHHHHCCC-CceEEEE
Confidence 46788888888877788888999999997 99999988875 3589999999 999999999997 55 4699999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|+.+.++. .++||+|++++.. ..+. +.+.+. |+| ||.+++.
T Consensus 133 ~d~~~~~~~-~~~fD~I~~~~~~--~~~~---~~l~~~--L~~-gG~lv~~ 174 (212)
T PRK00312 133 GDGWKGWPA-YAPFDRILVTAAA--PEIP---RALLEQ--LKE-GGILVAP 174 (212)
T ss_pred CCcccCCCc-CCCcCEEEEccCc--hhhh---HHHHHh--cCC-CcEEEEE
Confidence 998776543 4689999999877 5544 455666 766 7877664
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.48 E-value=8.7e-13 Score=109.33 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=84.3
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~ 113 (220)
+...++++|||+||| +|+.++.|+... + +++|++||.+ +++++.++++++ ++ ++++++++|+.++.+ .++|
T Consensus 38 ~~~~~~~~vLDiGcG-tG~~s~~la~~~-~-~~~V~~iD~s-~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~--~~~f 110 (181)
T TIGR00138 38 LEYLDGKKVIDIGSG-AGFPGIPLAIAR-P-ELKLTLLESN-HKKVAFLREVKAELGL-NNVEIVNGRAEDFQH--EEQF 110 (181)
T ss_pred HHhcCCCeEEEecCC-CCccHHHHHHHC-C-CCeEEEEeCc-HHHHHHHHHHHHHhCC-CCeEEEecchhhccc--cCCc
Confidence 344568999999997 999999998653 3 5899999999 999999999987 55 469999999988532 4789
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+|+.++ . ..+.++++.+.+. |+| ||++++.
T Consensus 111 D~I~s~~-~--~~~~~~~~~~~~~--Lkp-gG~lvi~ 141 (181)
T TIGR00138 111 DVITSRA-L--ASLNVLLELTLNL--LKV-GGYFLAY 141 (181)
T ss_pred cEEEehh-h--hCHHHHHHHHHHh--cCC-CCEEEEE
Confidence 9999998 5 6788999999888 886 7776654
No 25
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.47 E-value=1.4e-12 Score=108.89 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
++.+|||+||| +|+.++.++.+.+ +++|++||++ +++++.|+++++ ++ ++++++++|+.+.. . .++||+|+
T Consensus 45 ~g~~VLDiGcG-tG~~al~la~~~~--~~~V~giD~s-~~~l~~A~~~~~~~~l-~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSG-AGFPGIPLAIARP--ELKVTLVDSL-GKKIAFLREVAAELGL-KNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCC-CCHHHHHHHHHCC--CCeEEEEeCc-HHHHHHHHHHHHHcCC-CCEEEEeccHhhCC-C-CCCccEEE
Confidence 37899999997 9999999998643 6899999999 999999999997 66 34999999998854 3 57899999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++. .++.++++.+.+. |+| ||.+++-
T Consensus 118 ~~~~---~~~~~~l~~~~~~--Lkp-GG~lv~~ 144 (187)
T PRK00107 118 SRAV---ASLSDLVELCLPL--LKP-GGRFLAL 144 (187)
T ss_pred Eccc---cCHHHHHHHHHHh--cCC-CeEEEEE
Confidence 9873 5788999999999 887 6665554
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=1.4e-12 Score=107.65 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=95.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
+..+...+++..++...+..+|||+||| +|+.++.++...+ +++|+++|.+ +++++.|+++++ ++ .+++++++
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G-~G~~~~~la~~~~--~~~v~~vD~s-~~~~~~a~~n~~~~~~-~~i~~~~~ 88 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAG-TGSVSIEAALQFP--SLQVTAIERN-PDALRLIKENRQRFGC-GNIDIIPG 88 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCc-CCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHhCC-CCeEEEec
Confidence 4445555555555566688999999997 9999999998653 5899999999 999999999987 55 57999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|+...+ ..+||+||+++.. ..+.++++.+.+. |+| ||.+++..+..
T Consensus 89 d~~~~~---~~~~D~v~~~~~~--~~~~~~l~~~~~~--Lk~-gG~lv~~~~~~ 134 (187)
T PRK08287 89 EAPIEL---PGKADAIFIGGSG--GNLTAIIDWSLAH--LHP-GGRLVLTFILL 134 (187)
T ss_pred Cchhhc---CcCCCEEEECCCc--cCHHHHHHHHHHh--cCC-CeEEEEEEecH
Confidence 986433 3579999999877 7788899999998 876 88888875543
No 27
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.41 E-value=6.1e-12 Score=106.00 Aligned_cols=120 Identities=10% Similarity=0.010 Sum_probs=90.5
Q ss_pred CChhHHH----HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGE----FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~----~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|.... ++..+....+..+|||+||| +|+.++.++.. ...+|++||.+ ++.++.|++|++ ++ +++++
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~G-sG~l~l~~lsr---~a~~V~~vE~~-~~a~~~a~~Nl~~~~~-~~v~~ 106 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAG-SGALGLEALSR---YAAGATLLEMD-RAVAQQLIKNLATLKA-GNARV 106 (199)
T ss_pred cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCC-ccHHHHHHHHc---CCCEEEEEECC-HHHHHHHHHHHHHhCC-CcEEE
Confidence 3455544 45555554567899999997 99999853321 14699999999 999999999997 55 57999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|+.+.++....+||+||+|++-+.+.+...++.+...++|.+ +++|++.
T Consensus 107 ~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~-~~iv~ve 158 (199)
T PRK10909 107 VNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLAD-EALIYVE 158 (199)
T ss_pred EEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCC-CcEEEEE
Confidence 999999888653457999999999323667788888888665655 7777664
No 28
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=5.5e-12 Score=108.91 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=97.8
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+.+-.+....++.+|||+||| ||-.|+.+++..+ .|+|+.+|++ +.+++.|++.+. +..+ |+|++|||++ ||
T Consensus 41 ~~~i~~~~~~~g~~vLDva~G-TGd~a~~~~k~~g--~g~v~~~D~s-~~ML~~a~~k~~~~~~~~-i~fv~~dAe~-LP 114 (238)
T COG2226 41 RALISLLGIKPGDKVLDVACG-TGDMALLLAKSVG--TGEVVGLDIS-ESMLEVAREKLKKKGVQN-VEFVVGDAEN-LP 114 (238)
T ss_pred HHHHHhhCCCCCCEEEEecCC-ccHHHHHHHHhcC--CceEEEEECC-HHHHHHHHHHhhccCccc-eEEEEechhh-CC
Confidence 333334344478999999996 9999999999987 6999999999 999999999997 5544 9999999999 56
Q ss_pred hcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 108 GDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
--+++||+|.+.-.-++ .++...|+.+.+. |+| ||.+++.....+.
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RV--lKp-gG~~~vle~~~p~ 161 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRV--LKP-GGRLLVLEFSKPD 161 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHHHHh--hcC-CeEEEEEEcCCCC
Confidence 54689999999876633 5778999999999 886 9999998888754
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=2e-11 Score=105.69 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
.+..++|..+. .++.+|||+||| +|+.++.|+.. +.+|+++|++ +++++.|++++. ++.++++++++|+.
T Consensus 32 ~~~~~~l~~l~--~~~~~vLDiGcG-~G~~a~~la~~----g~~v~~vD~s-~~~l~~a~~~~~~~g~~~~v~~~~~d~~ 103 (255)
T PRK11036 32 QDLDRLLAELP--PRPLRVLDAGGG-EGQTAIKLAEL----GHQVILCDLS-AEMIQRAKQAAEAKGVSDNMQFIHCAAQ 103 (255)
T ss_pred HHHHHHHHhcC--CCCCEEEEeCCC-chHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHhcCCccceEEEEcCHH
Confidence 34455555553 457899999997 99999999873 6799999999 999999999986 66678999999999
Q ss_pred hhhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++.+...++||+|+...... -.+...+++.+.+. |+| ||.+++
T Consensus 104 ~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~--Lkp-gG~l~i 147 (255)
T PRK11036 104 DIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSV--LRP-GGALSL 147 (255)
T ss_pred HHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHH--cCC-CeEEEE
Confidence 86544357899999775431 13556789999998 886 777754
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.32 E-value=4.7e-11 Score=105.48 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|++.+++...+. ..++.+|||+||| +|..++.|+...+ +.+|+++|.+ +++++.|++|++ ++.++|++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~G-sG~i~~~la~~~~--~~~v~avDis-~~al~~A~~n~~~~~~~~~i~~ 176 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTG-SGCIAIACAYAFP--EAEVDAVDIS-PDALAVAEINIERHGLEDRVTL 176 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCc-hhHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEE
Confidence 45667777766544 2346799999997 9999999998654 5799999999 999999999997 66678999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|..+.++ ..+||+|+.|++.-. ..|..+++.+.+. |+| ||.+++.
T Consensus 177 ~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~--L~~-gG~l~~e 250 (284)
T TIGR03533 177 IQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADH--LNE-NGVLVVE 250 (284)
T ss_pred EECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 9999977654 257999999865300 1245667777788 876 8888875
No 31
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.31 E-value=1.5e-11 Score=103.41 Aligned_cols=129 Identities=10% Similarity=0.006 Sum_probs=97.1
Q ss_pred HHHHHHHhc-----CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH
Q 042616 11 KAYLQALKM-----GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 11 ~aY~~~l~~-----~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar 85 (220)
..|++++.. .-..++|...+++..+.. ++.+|||+||| +|..+..|+...+ +.+|++||++ +++++.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcG-tG~~~~~la~~~p--~~~v~gVD~s-~~~i~~a~ 81 (202)
T PRK00121 8 RGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFG-KGEFLVEMAKANP--DINFIGIEVH-EPGVGKAL 81 (202)
T ss_pred ccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEEccC-CCHHHHHHHHHCC--CccEEEEEec-hHHHHHHH
Confidence 345555443 235677888889888877 67899999997 9999999988654 5799999999 99999999
Q ss_pred HHhc--ccCCcEEEEEcchhhhhhh-c-CCCccEEEEcCCC---------CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 86 KSLG--RYANCIEFVKGDAQKLLMG-D-YRGADFVLIDCNI---------DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 86 ~~l~--g~~~~Ve~v~gda~~~L~~-~-~~~~D~VfiD~~k---------~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++++ ++ .+++++++|+.+.++. . .+.||.|++.... +...+..+++.+.+. |+| ||++++
T Consensus 82 ~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~--Lkp-gG~l~i 154 (202)
T PRK00121 82 KKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARK--LKP-GGEIHF 154 (202)
T ss_pred HHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHH--cCC-CCEEEE
Confidence 9987 55 6799999999444542 2 3679999985321 001257889999998 887 666554
No 32
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2e-11 Score=113.87 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=97.1
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
...+....+.++..++...+.++|||+||| +|..|+.++..+.+ .++|+++|.+ +.+++.+++|++ ++ ++|+++
T Consensus 231 ~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~~-~~~v~avDi~-~~~l~~~~~n~~~~g~-~~v~~~ 306 (444)
T PRK14902 231 LITIQDESSMLVAPALDPKGGDTVLDACAA-PGGKTTHIAELLKN-TGKVVALDIH-EHKLKLIEENAKRLGL-TNIETK 306 (444)
T ss_pred eEEEEChHHHHHHHHhCCCCCCEEEEeCCC-CCHHHHHHHHHhCC-CCEEEEEeCC-HHHHHHHHHHHHHcCC-CeEEEE
Confidence 344555567777777777788999999996 99999999987754 6899999999 999999999997 66 459999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCC-c----------------------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDI-D----------------------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~-~----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++|+.+..+.+.+.||+||+|++-.. + ...++++.+.+. |+| ||.+|...+.
T Consensus 307 ~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~--Lkp-GG~lvystcs 381 (444)
T PRK14902 307 ALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY--LKK-GGILVYSTCT 381 (444)
T ss_pred eCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH--cCC-CCEEEEEcCC
Confidence 99998865433468999999987310 0 013567888888 876 8888865443
No 33
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.31 E-value=1.2e-11 Score=106.40 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=83.1
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~ 108 (220)
.+..++...++.+|||+||| +|..|..|+..+.+ .++|+++|++ +.+++.|++.+. +. .+|+++++|+++ ||.
T Consensus 38 ~~~~~~~~~~g~~vLDv~~G-tG~~~~~l~~~~~~-~~~v~~vD~s-~~ML~~a~~k~~~~~~-~~i~~v~~da~~-lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACG-TGDVTRELARRVGP-NGKVVGVDIS-PGMLEVARKKLKREGL-QNIEFVQGDAED-LPF 112 (233)
T ss_dssp HHHHHHT--S--EEEEET-T-TSHHHHHHGGGSS----EEEEEES--HHHHHHHHHHHHHTT---SEEEEE-BTTB---S
T ss_pred HHHhccCCCCCCEEEEeCCC-hHHHHHHHHHHCCC-ccEEEEecCC-HHHHHHHHHHHHhhCC-CCeeEEEcCHHH-hcC
Confidence 44445567788999999997 99999999988776 7899999999 999999999987 44 589999999998 454
Q ss_pred cCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC-cc-----ceEEEeeecCCcE
Q 042616 109 DYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPKGS-WR-----GYKTHFLPIGEGL 172 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~-~~-----~~~s~~lPig~Gl 172 (220)
-.++||.|++--.-++ .+....++.+.+. |+| ||.+++-+...+.. +. -+-..++|+-..+
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~~~l~E~~RV--LkP-GG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l 180 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRERALREMYRV--LKP-GGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRL 180 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHHHHH--EEE-EEEEEEEEEEB-SSHHHHHHHHH------------
T ss_pred CCCceeEEEHHhhHHhhCCHHHHHHHHHHH--cCC-CeEEEEeeccCCCCchhhceeeeeecccccccccc
Confidence 4689999998765421 5678899999999 887 88766655544332 11 2333467754444
No 34
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=4.3e-11 Score=107.65 Aligned_cols=127 Identities=12% Similarity=0.141 Sum_probs=92.9
Q ss_pred HHHHHHH-Hhc---C---CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH
Q 042616 10 TKAYLQA-LKM---G---KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID 82 (220)
Q Consensus 10 ~~aY~~~-l~~---~---~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~ 82 (220)
..+|.|. +.. + +.+..|..-..+...+...+.++||||||| +|+.++.|++..+. .++|++||.+ +++++
T Consensus 43 ~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~-~g~VvgVDis-~~~l~ 119 (322)
T PRK13943 43 SYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGE-KGLVVSVEYS-RKICE 119 (322)
T ss_pred hhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCC-CCEEEEEECC-HHHHH
Confidence 4567666 321 2 234556654444444456677899999997 99999999987654 5789999999 99999
Q ss_pred HHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 83 ASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 83 ~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.|+++++ ++ ++++++++|+.+.++. ..+||+|++++.. .+.+ +.+.+. |+| ||.+++
T Consensus 120 ~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-~~~fD~Ii~~~g~--~~ip---~~~~~~--Lkp-gG~Lvv 178 (322)
T PRK13943 120 IAKRNVRRLGI-ENVIFVCGDGYYGVPE-FAPYDVIFVTVGV--DEVP---ETWFTQ--LKE-GGRVIV 178 (322)
T ss_pred HHHHHHHHcCC-CcEEEEeCChhhcccc-cCCccEEEECCch--HHhH---HHHHHh--cCC-CCEEEE
Confidence 9999987 55 6799999999887654 4679999999876 4443 334455 666 666555
No 35
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.30 E-value=3e-11 Score=98.75 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=85.5
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
++|...+...+.++|||+||| +|..++.++...+ ..+|+++|.+ +.+++.|++|++ ++.+ ++++..|..+.++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G-~G~i~~~la~~~~--~~~v~~vDi~-~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCG-SGVISLALAKRGP--DAKVTAVDIN-PDALELAKRNAERNGLEN-VEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETST-TSHHHHHHHHTST--CEEEEEEESB-HHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC
T ss_pred HHHHHHHhhccCCeEEEecCC-hHHHHHHHHHhCC--CCEEEEEcCC-HHHHHHHHHHHHhcCccc-ccccccccccccc
Confidence 455555555588999999997 9999999998654 4689999999 999999999998 5644 9999999988765
Q ss_pred hcCCCccEEEEcCCCCCc------cHHHHHHHHHhhcCCCCCCEEE-EEec
Q 042616 108 GDYRGADFVLIDCNIDID------GHKNVFRAAKESVMHGSGAGVI-VGYN 151 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~~------~y~~~l~~l~~~~~L~~~Ggvi-v~dN 151 (220)
..+||+|+.+.+.... ...+.++.+.+. |+| ||.+ ++.+
T Consensus 96 --~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~--Lk~-~G~l~lv~~ 141 (170)
T PF05175_consen 96 --DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRY--LKP-GGRLFLVIN 141 (170)
T ss_dssp --TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHH--EEE-EEEEEEEEE
T ss_pred --ccceeEEEEccchhcccccchhhHHHHHHHHHHh--ccC-CCEEEEEee
Confidence 4789999999866222 246778888888 887 6654 4443
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.29 E-value=6.6e-11 Score=102.10 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCCCChhhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH
Q 042616 1 MSSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 1 ~~~w~~e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~ 80 (220)
|-.|+|+...+ |.+. ....++.|...+...+.++||||||| +|..+..|+...+ +++|++||++ +.+
T Consensus 1 ~~~w~~~~Y~~-~~~~--------~~~~~~~ll~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~--~~~v~gvD~s-~~~ 67 (258)
T PRK01683 1 MSDWNPSLYLK-FEDE--------RTRPARDLLARVPLENPRYVVDLGCG-PGNSTELLVERWP--AARITGIDSS-PAM 67 (258)
T ss_pred CCCCCHHHHHH-HHHH--------hhcHHHHHHhhCCCcCCCEEEEEccc-CCHHHHHHHHHCC--CCEEEEEECC-HHH
Confidence 77899986543 2221 12233333333355677899999997 9999999998753 6899999999 999
Q ss_pred HHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 81 IDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 81 ~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++.|++++ .+++++.+|+.+..+ ..+||+|+....-+ -.+...+++.+.+. |+| ||.+++.
T Consensus 68 i~~a~~~~----~~~~~~~~d~~~~~~--~~~fD~v~~~~~l~~~~d~~~~l~~~~~~--Lkp-gG~~~~~ 129 (258)
T PRK01683 68 LAEARSRL----PDCQFVEADIASWQP--PQALDLIFANASLQWLPDHLELFPRLVSL--LAP-GGVLAVQ 129 (258)
T ss_pred HHHHHHhC----CCCeEEECchhccCC--CCCccEEEEccChhhCCCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 99999876 468999999987653 36899999876541 14667889999998 886 8877763
No 37
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.29 E-value=3e-11 Score=96.35 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
.+..+|||+||| +|..+..|+....+ ++++++||.+ +++++.|++.++ ++ ++++|+++|..+ ++.. .+.||+
T Consensus 2 ~~~~~iLDlGcG-~G~~~~~l~~~~~~-~~~i~gvD~s-~~~i~~a~~~~~~~~~-~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCG-TGRLLIQLAKELNP-GAKIIGVDIS-EEMIEYAKKRAKELGL-DNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-T-TSHHHHHHHHHSTT-TSEEEEEESS-HHHHHHHHHHHHHTTS-TTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCc-CcHHHHHHHHhcCC-CCEEEEEECc-HHHHHHhhcccccccc-cccceEEeehhc-cccccCCCeeE
Confidence 456899999997 99999999975555 8999999999 999999999987 66 489999999999 7542 268999
Q ss_pred EEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|+..+.... .+....++.+.+. |++ ||++++-+
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~--lk~-~G~~i~~~ 110 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRL--LKP-GGILIISD 110 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHH--EEE-EEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHH--cCC-CcEEEEEE
Confidence 999865311 4556789999998 876 66666543
No 38
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.29 E-value=2.9e-11 Score=118.80 Aligned_cols=112 Identities=9% Similarity=0.063 Sum_probs=89.7
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhcCC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~~~ 111 (220)
++...++++|||+||| +|.++++++.+- ..+|++||.+ +.+++.|++|++ ++. ++++++++|+.+.++....
T Consensus 533 ~~~~~~g~rVLDlf~g-tG~~sl~aa~~G---a~~V~~vD~s-~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~ 607 (702)
T PRK11783 533 IGQMAKGKDFLNLFAY-TGTASVHAALGG---AKSTTTVDMS-NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEARE 607 (702)
T ss_pred HHHhcCCCeEEEcCCC-CCHHHHHHHHCC---CCEEEEEeCC-HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCC
Confidence 4444567999999996 999999988741 3479999999 999999999997 665 5899999999998866556
Q ss_pred CccEEEEcCCCC------------CccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 112 GADFVLIDCNID------------IDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 112 ~~D~VfiD~~k~------------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+||+||+|++.- ...|.++++.+.++ |+| ||++++.+...
T Consensus 608 ~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l--L~~-gG~l~~~~~~~ 659 (702)
T PRK11783 608 QFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL--LRP-GGTLYFSNNKR 659 (702)
T ss_pred CcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH--cCC-CCEEEEEeCCc
Confidence 899999998741 13577888888888 876 88877765443
No 39
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.28 E-value=6.9e-11 Score=109.07 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=85.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhc---C
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGD---Y 110 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~---~ 110 (220)
...+.++|||+||| +|.+++.++. +. ..+|++||.+ +.+++.|++|++ ++. ++++++++|+.+.++.+ .
T Consensus 217 ~~~~g~rVLDlfsg-tG~~~l~aa~--~g-a~~V~~VD~s-~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~ 291 (396)
T PRK15128 217 RYVENKRVLNCFSY-TGGFAVSALM--GG-CSQVVSVDTS-QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_pred HhcCCCeEEEeccC-CCHHHHHHHh--CC-CCEEEEEECC-HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcC
Confidence 34567899999996 9998876553 22 4699999999 999999999997 664 57999999999988654 3
Q ss_pred CCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 111 RGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 111 ~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++||+||+|++.-. ..|.++++.+.+. |+| ||+++.-+..
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l--Lk~-gG~lv~~scs 341 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL--LNP-GGILLTFSCS 341 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH--cCC-CeEEEEEeCC
Confidence 57999999988511 2477888888888 876 8887765543
No 40
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.27 E-value=1.8e-10 Score=97.55 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=86.2
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCC
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
......+.++|||+||| +|..+..|+...++ +++|+++|.+ +++++.|+++++ ++ ++++++++|+.+. +...+
T Consensus 39 ~~l~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~~~v~gvD~s-~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~ 113 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCG-TADWSIALAEAVGP-EGHVIGLDFS-ENMLSVGRQKVKDAGL-HNVELVHGNAMEL-PFDDN 113 (231)
T ss_pred HhcCCCCCCEEEEeCCC-cCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHHHhcCC-CceEEEEechhcC-CCCCC
Confidence 33355567899999997 99999999988765 7899999999 999999999986 44 6799999999874 32246
Q ss_pred CccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+||+|+++... ...++...++.+.+. |+| ||.+++-
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~--Lk~-gG~l~~~ 150 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRV--VKP-GGKVVCL 150 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHH--cCc-CeEEEEE
Confidence 89999987543 115678889999988 876 7776654
No 41
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=6.2e-11 Score=110.42 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=98.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+....++++..++...+..+|||+||| +|..|+.++..+.. +|+|+++|.+ +.+++.++++++ |+ ++|++
T Consensus 217 G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cag-pGgkt~~la~~~~~-~g~V~a~Dis-~~rl~~~~~n~~r~g~-~~v~~ 292 (431)
T PRK14903 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAA-PGGKTTAIAELMKD-QGKILAVDIS-REKIQLVEKHAKRLKL-SSIEI 292 (431)
T ss_pred CeEEEECHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCC-CCEEEEEECC-HHHHHHHHHHHHHcCC-CeEEE
Confidence 3344555567777777778888999999996 99999999988765 7899999999 999999999997 66 46999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCc-----------------------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDID-----------------------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~-----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++|+.++.....+.||.|++|++-... ...++++.+.+. |+| ||.+|.--..
T Consensus 293 ~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~--Lkp-GG~LvYsTCs 368 (431)
T PRK14903 293 KIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL--LEK-GGILLYSTCT 368 (431)
T ss_pred EECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEECC
Confidence 9999987532234679999999865111 124557777887 876 8887766554
No 42
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.27 E-value=8.7e-11 Score=102.62 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
....+...+....+..+|||+||| +|..|+.||..+.. .|+|+++|.+ +.+++.++++++ ++ .+|+++++|+..
T Consensus 58 ~~s~~~~~~l~~~~g~~VLDl~ag-~G~kt~~la~~~~~-~g~v~a~D~~-~~~l~~~~~n~~~~g~-~~v~~~~~D~~~ 133 (264)
T TIGR00446 58 ASSMIPPLALEPDPPERVLDMAAA-PGGKTTQISALMKN-EGAIVANEFS-KSRTKVLIANINRCGV-LNVAVTNFDGRV 133 (264)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCC-chHHHHHHHHHcCC-CCEEEEEcCC-HHHHHHHHHHHHHcCC-CcEEEecCCHHH
Confidence 334444455556677899999996 99999999988765 6899999999 999999999998 65 579999999987
Q ss_pred hhhhcCCCccEEEEcCCCCCc-----------------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 105 LLMGDYRGADFVLIDCNIDID-----------------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~-----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+. ...+.||.||+|++-... ...++++.+.+. |+| ||.||.-..
T Consensus 134 ~~-~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~--lkp-gG~lvYstc 200 (264)
T TIGR00446 134 FG-AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA--LKP-GGVLVYSTC 200 (264)
T ss_pred hh-hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEeC
Confidence 53 334579999999864110 124577777787 876 888876533
No 43
>PRK01581 speE spermidine synthase; Validated
Probab=99.27 E-value=9.6e-11 Score=106.68 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=86.1
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh-----c--cc-CCcEEEEEcchhhhh
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL-----G--RY-ANCIEFVKGDAQKLL 106 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l-----~--g~-~~~Ve~v~gda~~~L 106 (220)
++...+|++||+||+| .|+++..+++. +...+|++||+| +++++.|+++. . .+ ..+++++++|+.+++
T Consensus 145 m~~h~~PkrVLIIGgG-dG~tlrelLk~--~~v~~It~VEID-peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 145 MSKVIDPKRVLILGGG-DGLALREVLKY--ETVLHVDLVDLD-GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred HHhCCCCCEEEEECCC-HHHHHHHHHhc--CCCCeEEEEeCC-HHHHHHHHhccccchhccccCCCCceEEEECcHHHHH
Confidence 4456789999999986 89976666652 225899999999 99999999732 1 22 468999999999999
Q ss_pred hhcCCCccEEEEcCCCCC-----ccH-HHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 107 MGDYRGADFVLIDCNIDI-----DGH-KNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~-----~~y-~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+...+.||+||+|..... ..| .++++.+.+. |+| ||++++-..
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~--LkP-gGV~V~Qs~ 269 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATF--LTE-DGAFVCQSN 269 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh--cCC-CcEEEEecC
Confidence 776678999999975411 244 6789999999 986 888887643
No 44
>PRK00811 spermidine synthase; Provisional
Probab=99.26 E-value=8.4e-11 Score=103.85 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=84.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc--CCcEEEEEcchhhhhhhcC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY--ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~--~~~Ve~v~gda~~~L~~~~ 110 (220)
...++++||+||+| .|.++..+++. ....+|++||+| ++.++.|++++. +. ..+++++.+|+.++++...
T Consensus 73 ~~~~p~~VL~iG~G-~G~~~~~~l~~--~~~~~V~~VEid-~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~ 148 (283)
T PRK00811 73 AHPNPKRVLIIGGG-DGGTLREVLKH--PSVEKITLVEID-ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETE 148 (283)
T ss_pred hCCCCCEEEEEecC-chHHHHHHHcC--CCCCEEEEEeCC-HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCC
Confidence 34578999999986 89998888753 225799999999 999999999985 22 4679999999999987645
Q ss_pred CCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.||+|++|..... ..| .++++.+.+. |+| ||++++.
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~--L~~-gGvlv~~ 190 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRA--LKE-DGIFVAQ 190 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHh--cCC-CcEEEEe
Confidence 78999999974311 122 5678889988 876 8988874
No 45
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.26 E-value=6.5e-11 Score=89.61 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=80.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
.+|||+||| +|..++.+++.. ..+++++|.| |..++.|+.++. ++.++++++++|..+..+.+ .++||+|+.
T Consensus 2 ~~vlD~~~G-~G~~~~~~~~~~---~~~~~gvdi~-~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCG-SGTFLLAALRRG---AARVTGVDID-PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETST-TCHHHHHHHHHC---TCEEEEEESS-HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcc-hHHHHHHHHHHC---CCeEEEEEEC-HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 579999997 999999888764 3799999999 999999999997 66678999999999987443 478999999
Q ss_pred cCCCCC---------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDI---------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~---------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|.+-.. ..|...++.+.+. |+| ||++++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~--L~~-gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARL--LKP-GGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHH--cCC-CeEEEE
Confidence 987621 1357789999998 886 777654
No 46
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=6e-11 Score=110.79 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=94.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
+...+......+...++...+.++|||+||| +|..|++|+..++. +++|+++|.+ +++++.++++++ |+ ++|++
T Consensus 230 G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG-~G~kt~~la~~~~~-~~~V~avD~s-~~~l~~~~~~~~~~g~-~~v~~ 305 (445)
T PRK14904 230 GLVSVQNPTQALACLLLNPQPGSTVLDLCAA-PGGKSTFMAELMQN-RGQITAVDRY-PQKLEKIRSHASALGI-TIIET 305 (445)
T ss_pred cEEEEeCHHHHHHHHhcCCCCCCEEEEECCC-CCHHHHHHHHHhCC-CcEEEEEECC-HHHHHHHHHHHHHhCC-CeEEE
Confidence 3334444444555555566667899999996 99999999988765 6899999999 999999999997 66 57999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCc-----------------------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDID-----------------------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~-----------------------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++|+.+..+ ..+||.||+|++-... ....+++.+.+. |+| ||.+|.....
T Consensus 306 ~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~--lkp-gG~lvystcs 379 (445)
T PRK14904 306 IEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL--LKP-GGVLVYATCS 379 (445)
T ss_pred EeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEeCC
Confidence 9999988654 3679999999753110 123467778887 876 8888776544
No 47
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=2.5e-10 Score=95.30 Aligned_cols=121 Identities=8% Similarity=-0.026 Sum_probs=91.4
Q ss_pred CChhHHHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|....+..++.. .....++||++|| +|..++.++... ..+|+.||.+ +..++.+++|++ ++.+++++
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaG-sG~lglea~srg---a~~v~~vE~~-~~a~~~~~~N~~~~~~~~~~~~ 103 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAG-SGLLGEEALSRG---AKVAFLEEDD-RKANQTLKENLALLKSGEQAEV 103 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCC-CcHHHHHHHhCC---CCEEEEEeCC-HHHHHHHHHHHHHhCCcccEEE
Confidence 44444444444433 3467899999996 999988766531 3489999999 999999999997 66668999
Q ss_pred EEcchhhhhhhcC---CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDY---RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~---~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|+.+.++.+. ..||+||+|++-....+.+.++.+.....| +++|+||+.
T Consensus 104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l-~~~~iiv~E 158 (189)
T TIGR00095 104 VRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWIL-EDTVLIVVE 158 (189)
T ss_pred EehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCC-CCCeEEEEE
Confidence 9999988876432 248999999988556678888888776545 569998886
No 48
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=3.9e-10 Score=97.37 Aligned_cols=110 Identities=9% Similarity=0.205 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..++.|+..+...++++++||++ +.+++.|+++++ +...+++++++|+.+.. ...+|+|
T Consensus 55 ~~~~~vLDlGcG-tG~~~~~l~~~~~~~~~~v~gvD~S-~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCS-LGAATLSVRRNIHHDNCKIIAIDNS-PAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---IENASMV 129 (247)
T ss_pred CCCCEEEEEccc-CCHHHHHHHHhcCCCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---CCCCCEE
Confidence 356789999997 9999999988654447999999999 999999999997 55568999999998753 2468998
Q ss_pred EEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 117 LIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 117 fiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
++.... +..+...+++.+.+. |+|.|.+++++.+...
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~--LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQG--LNPGGALVLSEKFSFE 169 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHh--cCCCCEEEEEEecCCC
Confidence 864321 112346789999999 9874444555545443
No 49
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=2.3e-10 Score=102.23 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=89.8
Q ss_pred CChhHHHHHHHHHhh---C-CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAG---N-NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~---~-~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..|++.+++...... . ++.+|||+||| +|..++.|+...+ +.+|+++|.+ +.+++.|++|++ ++.++|++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~G-sG~iai~la~~~p--~~~V~avDis-~~al~~A~~n~~~~~l~~~i~~ 188 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTG-SGCIAIACAYAFP--DAEVDAVDIS-PDALAVAEINIERHGLEDRVTL 188 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEech-hhHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEE
Confidence 446667776654432 1 23789999997 9999999998654 5899999999 999999999997 66678999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|..+.++. .+||+|+.|.+.-. ..|..+++.+.+. |+| ||.+++.
T Consensus 189 ~~~D~~~~l~~--~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~--L~p-gG~l~~E 262 (307)
T PRK11805 189 IESDLFAALPG--RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY--LTE-DGVLVVE 262 (307)
T ss_pred EECchhhhCCC--CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 99999876652 57999999864300 1245667888888 876 8888875
No 50
>PLN02366 spermidine synthase
Probab=99.23 E-value=1.6e-10 Score=103.38 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=84.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhc-CC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~-~~ 111 (220)
..++++||+||+| .|.++..+++. +...+|+.||+| ++.++.||+++. ++ ..+++++++|+.+++... .+
T Consensus 89 ~~~pkrVLiIGgG-~G~~~rellk~--~~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~ 164 (308)
T PLN02366 89 IPNPKKVLVVGGG-DGGVLREIARH--SSVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEG 164 (308)
T ss_pred CCCCCeEEEEcCC-ccHHHHHHHhC--CCCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCC
Confidence 4678999999986 89888888764 325799999999 999999999985 23 357999999999998654 46
Q ss_pred CccEEEEcCCCCC----cc-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDI----DG-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~----~~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.||+||+|+.... .. ..++++.+.+. |+| ||+++..
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~--L~p-gGvlv~q 205 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARA--LRP-GGVVCTQ 205 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHh--cCC-CcEEEEC
Confidence 7999999986511 11 35789999998 876 8988764
No 51
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=2.8e-10 Score=106.00 Aligned_cols=149 Identities=13% Similarity=0.223 Sum_probs=106.8
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+....++++..+....+.++|||+||| +|..|+.|+..+.. .|+|+++|.+ +++++.++++++ |+ ++|+++++|
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag-~G~kt~~la~~~~~-~g~v~a~D~~-~~rl~~~~~n~~r~g~-~~v~~~~~D 311 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAA-PGGKTTHIAELMGD-QGEIWAVDRS-ASRLKKLQENAQRLGL-KSIKILAAD 311 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCC-CchhHHHHHHHhCC-CceEEEEcCC-HHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 344456666666677778999999996 99999999988765 6899999999 999999999997 66 469999999
Q ss_pred hhhhhh---hcCCCccEEEEcCCCCC-------cc----------------HHHHHHHHHhhcCCCCCCEEEEEecCC-C
Q 042616 102 AQKLLM---GDYRGADFVLIDCNIDI-------DG----------------HKNVFRAAKESVMHGSGAGVIVGYNAL-P 154 (220)
Q Consensus 102 a~~~L~---~~~~~~D~VfiD~~k~~-------~~----------------y~~~l~~l~~~~~L~~~Ggviv~dNv~-~ 154 (220)
+.+... ...+.||.||+|++-.. .+ -.++++.+.+. |+| ||.+|.-... .
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~--lkp-gG~lvystcsi~ 388 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPL--LKP-GGTLVYATCTLH 388 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEeCCCC
Confidence 987642 12367999999986310 10 24667888887 876 8877765433 3
Q ss_pred CC-------Ccc----ceEEE-----eeec---CCcEEEEEEee
Q 042616 155 KG-------SWR----GYKTH-----FLPI---GEGLLVTRIGE 179 (220)
Q Consensus 155 ~g-------~~~----~~~s~-----~lPi---g~Gl~v~~~~~ 179 (220)
+. .|. +|+-. ++|- +||+.+++...
T Consensus 389 ~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 389 PAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred hhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 32 122 33322 3443 48898887764
No 52
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.21 E-value=2e-10 Score=100.06 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=87.0
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~ 112 (220)
++...+.++|||+||| +|..++.++....+ .++|+++|++ +.+++.|++++. ++ ++++++.+|+.+ ++...+.
T Consensus 72 ~~~~~~g~~VLDiG~G-~G~~~~~~a~~~g~-~~~v~gvD~s-~~~l~~A~~~~~~~g~-~~v~~~~~d~~~-l~~~~~~ 146 (272)
T PRK11873 72 LAELKPGETVLDLGSG-GGFDCFLAARRVGP-TGKVIGVDMT-PEMLAKARANARKAGY-TNVEFRLGEIEA-LPVADNS 146 (272)
T ss_pred hccCCCCCEEEEeCCC-CCHHHHHHHHHhCC-CCEEEEECCC-HHHHHHHHHHHHHcCC-CCEEEEEcchhh-CCCCCCc
Confidence 3455678999999997 79988888876654 6799999999 999999999986 55 589999999876 3322468
Q ss_pred ccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||+|+.++--. ..+...+++.+.+. |+| ||.+++.++.
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~--Lkp-GG~l~i~~~~ 185 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRV--LKP-GGRFAISDVV 185 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHH--cCC-CcEEEEEEee
Confidence 99999886420 13567889999999 886 8887776554
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.19 E-value=7e-10 Score=90.97 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
.+.+|.......++++|||+||| +|+.++.++.. +.+|+++|.+ +++++.|+++++...-+++++.+|..+..
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G-~G~~~~~l~~~----~~~v~~vD~s-~~~~~~a~~~~~~~~~~~~~~~~d~~~~~- 79 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAG-TGLVAIRLKGK----GKCILTTDIN-PFAVKELRENAKLNNVGLDVVMTDLFKGV- 79 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCC-hhHHHHHHHhc----CCEEEEEECC-HHHHHHHHHHHHHcCCceEEEEccccccc-
Confidence 34666666677788999999997 99999988864 3489999999 99999999999722236899999987754
Q ss_pred hcCCCccEEEEcCCCCC----------------------ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GDYRGADFVLIDCNIDI----------------------DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~----------------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.++||+|+.+.+... ..+.++++.+.+. |+|.|-+++++...
T Consensus 80 --~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 80 --RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI--LKEGGRVQLIQSSL 143 (179)
T ss_pred --CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh--hCCCCEEEEEEecc
Confidence 358999998864300 0145678888888 88744455555443
No 54
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=3e-10 Score=98.52 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
.-+-||...+.....++|||+||| +|..++.||.- .+..++++||.+ +++++.|++|++ +++++|+++++|..+
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG-~G~l~L~la~r--~~~a~I~~VEiq-~~~a~~A~~nv~ln~l~~ri~v~~~Di~~ 106 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAG-NGALGLLLAQR--TEKAKIVGVEIQ-EEAAEMAQRNVALNPLEERIQVIEADIKE 106 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCC-cCHHHHHHhcc--CCCCcEEEEEeC-HHHHHHHHHHHHhCcchhceeEehhhHHH
Confidence 457899999999999999999997 89888877753 224899999999 999999999998 788999999999999
Q ss_pred hhhhcC-CCccEEEEcCCC-----C--------------CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDY-RGADFVLIDCNI-----D--------------IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~-~~~D~VfiD~~k-----~--------------~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+... .+||+|+..++- . ..+..++++.+... |+++|.+.+++
T Consensus 107 ~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~--lk~~G~l~~V~ 170 (248)
T COG4123 107 FLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKL--LKPGGRLAFVH 170 (248)
T ss_pred hhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHH--ccCCCEEEEEe
Confidence 887654 469999987654 0 02467888888988 98855555554
No 55
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.17 E-value=5.1e-10 Score=100.09 Aligned_cols=116 Identities=13% Similarity=0.049 Sum_probs=85.6
Q ss_pred CChhHHHHHHHH----HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISAL----AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~L----a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..+.+++-|... +...++.+|||+||| +|..++.||.. +.+|++||.+ +.+++.|+++++ ++ ++++|
T Consensus 153 ~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG-~G~~sl~la~~----~~~V~gvD~s-~~av~~A~~n~~~~~l-~~v~~ 225 (315)
T PRK03522 153 TNPAVAAQLYATARDWVRELPPRSMWDLFCG-VGGFGLHCATP----GMQLTGIEIS-AEAIACAKQSAAELGL-TNVQF 225 (315)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEccCC-CCHHHHHHHhc----CCEEEEEeCC-HHHHHHHHHHHHHcCC-CceEE
Confidence 444555444432 233357899999997 99999999872 6799999999 999999999997 66 68999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|+.++++...+.||+|++|.++ .+....+.+.+.+. .|++-+.+.-
T Consensus 226 ~~~D~~~~~~~~~~~~D~Vv~dPPr-~G~~~~~~~~l~~~---~~~~ivyvsc 274 (315)
T PRK03522 226 QALDSTQFATAQGEVPDLVLVNPPR-RGIGKELCDYLSQM---APRFILYSSC 274 (315)
T ss_pred EEcCHHHHHHhcCCCCeEEEECCCC-CCccHHHHHHHHHc---CCCeEEEEEC
Confidence 9999998775434579999999997 23346666777665 4534334333
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.17 E-value=3.5e-10 Score=97.01 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=85.2
Q ss_pred ChhHHHHHHHH--HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 25 EPDVGEFISAL--AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 25 ~p~~~~~L~~L--a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
....+.+|..+ +...+..+|||+||| +|+.++.|+...+ .|+|+++|.+ +++++.++++++.. .+|+++.+|+
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G-~G~~~~~la~~v~--~g~V~avD~~-~~ml~~l~~~a~~~-~nv~~i~~D~ 129 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAA-SGTTVSHVSDIVE--EGVVYAVEFA-PRPMRELLEVAEER-KNIIPILADA 129 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccC-CCHHHHHHHHhcC--CCeEEEEECC-HHHHHHHHHHhhhc-CCcEEEECCC
Confidence 33445555545 566678899999997 9999999998764 5899999999 99998777776543 5799999998
Q ss_pred hhhh--hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 103 QKLL--MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 103 ~~~L--~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.. ..+.++||+||.|... .......++.+.+. |+| ||.+++
T Consensus 130 ~~~~~~~~l~~~~D~i~~d~~~-p~~~~~~L~~~~r~--LKp-GG~lvI 174 (226)
T PRK04266 130 RKPERYAHVVEKVDVIYQDVAQ-PNQAEIAIDNAEFF--LKD-GGYLLL 174 (226)
T ss_pred CCcchhhhccccCCEEEECCCC-hhHHHHHHHHHHHh--cCC-CcEEEE
Confidence 6521 1223579999998764 12334457888888 887 666655
No 57
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.16 E-value=1.4e-09 Score=94.96 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----ccCCcEEEEEcchhhhhhhc
Q 042616 34 ALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~~~~Ve~v~gda~~~L~~~ 109 (220)
.++...+..+|||+||| +|..+..|+...++ .++|++||++ +++++.|++... ...++++++++|+.++ |..
T Consensus 67 ~~~~~~~~~~VLDlGcG-tG~~~~~la~~~~~-~~~V~gvD~S-~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~ 142 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCG-SGDLAFLLSEKVGS-DGKVMGLDFS-SEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFD 142 (261)
T ss_pred HHhCCCCCCEEEEECCc-CCHHHHHHHHHhCC-CCEEEEEECC-HHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCC
Confidence 34455677899999997 99999999876544 5899999999 999999987653 2235799999999873 433
Q ss_pred CCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 110 YRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 110 ~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++||+|++...- .-.+....++.+.+. |+| ||.+++-+...
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rv--Lkp-GG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRV--LKP-GSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHH--cCc-CcEEEEEECCC
Confidence 4689999876433 114667889999999 887 77765554443
No 58
>PLN02244 tocopherol O-methyltransferase
Probab=99.16 E-value=5.5e-10 Score=100.98 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.++++||||||| +|.++..|+... +.+|++||.+ +.+++.|+++.+ ++.++|+++++|+.+. |...+.||+|
T Consensus 117 ~~~~~VLDiGCG-~G~~~~~La~~~---g~~v~gvD~s-~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCG-IGGSSRYLARKY---GANVKGITLS-PVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCC-CCHHHHHHHHhc---CCEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEE
Confidence 457899999997 999999998753 5799999999 999999999886 6667899999999873 3335789999
Q ss_pred EEcCC-CCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCN-IDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~-k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.-.. ....+...+++.+.+. |+| ||.+++
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rv--Lkp-GG~lvi 221 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARV--AAP-GGRIII 221 (340)
T ss_pred EECCchhccCCHHHHHHHHHHH--cCC-CcEEEE
Confidence 97432 2224667889999998 887 666554
No 59
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.15 E-value=6.6e-10 Score=96.05 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=81.1
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
.+|..+ ...++.+||||||| +|..+..|+...+ +++|+++|++ +.+++.|++. +++++++|+.+..+
T Consensus 20 ~ll~~l-~~~~~~~vLDlGcG-~G~~~~~l~~~~p--~~~v~gvD~s-~~~~~~a~~~------~~~~~~~d~~~~~~-- 86 (255)
T PRK14103 20 DLLARV-GAERARRVVDLGCG-PGNLTRYLARRWP--GAVIEALDSS-PEMVAAARER------GVDARTGDVRDWKP-- 86 (255)
T ss_pred HHHHhC-CCCCCCEEEEEcCC-CCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHhc------CCcEEEcChhhCCC--
Confidence 344333 45667999999997 9999999998653 6899999999 9999998763 58899999987643
Q ss_pred CCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 YRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++||+|+....-. -.+....++.+.+. |+| ||.+++-
T Consensus 87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~--Lkp-gG~l~~~ 125 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPEHADLLVRWVDE--LAP-GSWIAVQ 125 (255)
T ss_pred CCCceEEEEehhhhhCCCHHHHHHHHHHh--CCC-CcEEEEE
Confidence 46899999876431 13567889999998 887 7877663
No 60
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.15 E-value=8.7e-10 Score=97.17 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHhh---CCC-CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAG---NNA-QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~---~~a-~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
-.|+...++...... .++ .+|||+||| +|..++.|+...+ +.+|+++|.+ +++++.|++|++ ++.+++++
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~G-sG~i~l~la~~~~--~~~v~avDis-~~al~~a~~n~~~~~~~~~v~~ 169 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTG-SGCIALALAYEFP--NAEVIAVDIS-PDALAVAEENAEKNQLEHRVEF 169 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEecc-HhHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCCCCcEEE
Confidence 345566666554432 233 689999997 9999999998764 4799999999 999999999997 66567999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++|..+.++. .+||+|+.+.+--. ..|..+++.+.+. |+| ||++++.
T Consensus 170 ~~~d~~~~~~~--~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~--L~~-gG~l~~e 243 (284)
T TIGR00536 170 IQSNLFEPLAG--QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY--LKP-NGFLVCE 243 (284)
T ss_pred EECchhccCcC--CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh--ccC-CCEEEEE
Confidence 99999875532 37999998753300 1356677777777 876 8888775
No 61
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.15 E-value=2.4e-10 Score=95.09 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 29 GEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
..+...|... ....++||+-+| +|..++- |+.....+|+.||.+ ++.++..++|++ +..++++++.+|+...
T Consensus 30 ealFniL~~~~~~g~~vLDLFaG-SGalGlE---ALSRGA~~v~fVE~~-~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAG-SGALGLE---ALSRGAKSVVFVEKN-RKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-T-TSHHHHH---HHHTT-SEEEEEES--HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCc-cCccHHH---HHhcCCCeEEEEECC-HHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 4555555555 678999999886 8988873 344434699999999 999999999998 6667899999999988
Q ss_pred hhhc---CCCccEEEEcCCCCCcc-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 106 LMGD---YRGADFVLIDCNIDIDG-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 106 L~~~---~~~~D~VfiD~~k~~~~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+++. ..+||+||+|++-.... |.+.++.+...++|. ++|+||+.
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E 152 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN-EDGLIIIE 152 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEE
T ss_pred HHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEE
Confidence 8665 47899999999875555 488899998655465 58988886
No 62
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.15 E-value=1.5e-09 Score=92.95 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 27 DVGEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 27 ~~~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
...+++..++.. .+..+|||+||| +|..+..|+......+++++++|++ +++++.|+++++ +...+++++++|+
T Consensus 38 ~~~~~~~~l~~~~~~~~~~iLDlGcG-~G~~~~~l~~~~~~p~~~v~gvD~s-~~ml~~a~~~~~~~~~~~~v~~~~~d~ 115 (239)
T TIGR00740 38 NIITAIGMLAERFVTPDSNVYDLGCS-RGAATLSARRNINQPNVKIIGIDNS-QPMVERCRQHIAAYHSEIPVEILCNDI 115 (239)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCC-CCHHHHHHHHhcCCCCCeEEEEeCC-HHHHHHHHHHHHhcCCCCCeEEEECCh
Confidence 344445445432 356789999997 9999999998765447999999999 999999999987 4446799999999
Q ss_pred hhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 103 QKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+.- ...+|+|+....- ...+...+++.+.+. |+| ||.+++.+.
T Consensus 116 ~~~~---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~--Lkp-gG~l~i~d~ 162 (239)
T TIGR00740 116 RHVE---IKNASMVILNFTLQFLPPEDRIALLTKIYEG--LNP-NGVLVLSEK 162 (239)
T ss_pred hhCC---CCCCCEEeeecchhhCCHHHHHHHHHHHHHh--cCC-CeEEEEeec
Confidence 8753 2468988765432 012346789999998 887 666655443
No 63
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=5.3e-10 Score=103.94 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+....+.++..++...+..+|||+||| +|..|+.++...+ +++|+++|.+ +.+++.++++++.+.-.++++++|+
T Consensus 227 ~iQd~~s~~~~~~l~~~~g~~VLDlgaG-~G~~t~~la~~~~--~~~v~a~D~s-~~~l~~~~~n~~~~g~~~~~~~~D~ 302 (427)
T PRK10901 227 SVQDAAAQLAATLLAPQNGERVLDACAA-PGGKTAHILELAP--QAQVVALDID-AQRLERVRENLQRLGLKATVIVGDA 302 (427)
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEeCCC-CChHHHHHHHHcC--CCEEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEcCc
Confidence 3455556667667777788999999996 9999999998764 4899999999 9999999999972222478999999
Q ss_pred hhhhhhc-CCCccEEEEcCCCCC-----------------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 103 QKLLMGD-YRGADFVLIDCNIDI-----------------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 103 ~~~L~~~-~~~~D~VfiD~~k~~-----------------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+..+.. .++||+||+|++-.. ..+.++++.+.+. |+| ||.+|.-.
T Consensus 303 ~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~--Lkp-GG~lvyst 372 (427)
T PRK10901 303 RDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPL--LKP-GGTLLYAT 372 (427)
T ss_pred ccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEe
Confidence 8743211 357999999997410 0123577888887 876 77766443
No 64
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.13 E-value=9.3e-10 Score=102.18 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~~ 113 (220)
.+.++|||+||| +|..++.||.. ..+|++||.+ +++++.|++|++ ++ ++++++.+|+.+.++.+ ...|
T Consensus 291 ~~~~~vLDl~cG-~G~~sl~la~~----~~~V~~vE~~-~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 291 QGEELVVDAYCG-VGTFTLPLAKQ----AKSVVGIEVV-PESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred CCCCEEEEcCCC-cCHHHHHHHHh----CCEEEEEEcC-HHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCC
Confidence 456899999997 99999999975 4689999999 999999999997 55 68999999999887653 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
|+|++|+++ .+...+.++.+.. +.| ++++
T Consensus 364 D~vi~dPPr-~G~~~~~l~~l~~---l~~-~~iv 392 (431)
T TIGR00479 364 DVLLLDPPR-KGCAAEVLRTIIE---LKP-ERIV 392 (431)
T ss_pred CEEEECcCC-CCCCHHHHHHHHh---cCC-CEEE
Confidence 999999997 2446888888776 445 5554
No 65
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.13 E-value=1.4e-09 Score=99.68 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=89.0
Q ss_pred CCChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 23 GKEPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
...+.+.+-|...+.. .+..+|||+||| +|..++.+|. . +.+|++||.+ +.+++.|++|++ ++ ++++
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG-~G~~~l~la~---~-~~~v~~vE~~-~~av~~a~~N~~~~~~-~~~~ 284 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCG-VGGFGLHCAG---P-DTQLTGIEIE-SEAIACAQQSAQMLGL-DNLS 284 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCC-ccHHHHHHhh---c-CCeEEEEECC-HHHHHHHHHHHHHcCC-CcEE
Confidence 3455565555443322 356899999997 9999998884 2 5799999999 999999999997 55 5899
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
++++|+.++++....+||+||+|+++ .+.....++.+... .|++-++|..|
T Consensus 285 ~~~~d~~~~~~~~~~~~D~vi~DPPr-~G~~~~~l~~l~~~---~p~~ivyvsc~ 335 (374)
T TIGR02085 285 FAALDSAKFATAQMSAPELVLVNPPR-RGIGKELCDYLSQM---APKFILYSSCN 335 (374)
T ss_pred EEECCHHHHHHhcCCCCCEEEECCCC-CCCcHHHHHHHHhc---CCCeEEEEEeC
Confidence 99999998875433569999999997 34567777888764 56555555555
No 66
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.13 E-value=4.9e-10 Score=104.10 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=91.0
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+....++++..+....+..+|||+||| +|..|+.++..++ .|+|+++|.+ +++++.++++++ |+..+++++.+|
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag-~G~kt~~la~~~~--~~~v~a~D~~-~~~l~~~~~n~~r~g~~~~v~~~~~d 297 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAA-PGGKTTHILELAP--QAQVVALDIH-EHRLKRVYENLKRLGLTIKAETKDGD 297 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCC-ccHHHHHHHHHcC--CCeEEEEeCC-HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 344556777777777788999999996 9999999998775 6899999999 999999999997 664345557787
Q ss_pred hhhhhhh-cCCCccEEEEcCCCCC-------cc----------------HHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 102 AQKLLMG-DYRGADFVLIDCNIDI-------DG----------------HKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 102 a~~~L~~-~~~~~D~VfiD~~k~~-------~~----------------y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.+.... ...+||.||+|++-.. .+ ..+.++.+.+. |+| ||.+|.-...
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~--Lkp-gG~lvystcs 370 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL--LKT-GGTLVYATCS 370 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHh--cCC-CcEEEEEeCC
Confidence 7543211 1367999999975311 00 24677888887 876 7877765444
No 67
>PLN02823 spermine synthase
Probab=99.13 E-value=1e-09 Score=99.39 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=82.8
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|++||.||+| .|.++..+++.. ...+|+.||+| ++.++.||+++. ++ ..+++++.+|+.++|....+.
T Consensus 101 ~~~pk~VLiiGgG-~G~~~re~l~~~--~~~~v~~VEiD-~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~ 176 (336)
T PLN02823 101 HPNPKTVFIMGGG-EGSTAREVLRHK--TVEKVVMCDID-QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEK 176 (336)
T ss_pred CCCCCEEEEECCC-chHHHHHHHhCC--CCCeEEEEECC-HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCC
Confidence 3468999999975 898887777532 25789999999 999999999985 22 467999999999999765678
Q ss_pred ccEEEEcCCCCC------ccH-HHHHH-HHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDI------DGH-KNVFR-AAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~------~~y-~~~l~-~l~~~~~L~~~Ggviv~d 150 (220)
||+||+|..... ..| .++++ .+.+. |+| ||++++.
T Consensus 177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~--L~p-~Gvlv~q 219 (336)
T PLN02823 177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPK--LNP-GGIFVTQ 219 (336)
T ss_pred ccEEEecCCCccccCcchhhccHHHHHHHHHHh--cCC-CcEEEEe
Confidence 999999964310 123 56777 78888 876 8988874
No 68
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.12 E-value=1.1e-09 Score=95.97 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=83.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---c-c-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---R-Y-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g-~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|++||+||+| .|.++..++... ...+++++|.| ++.++.|++++. + + ..+++++.+|+.+++....++
T Consensus 70 ~~~p~~VL~iG~G-~G~~~~~ll~~~--~~~~v~~veid-~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~ 145 (270)
T TIGR00417 70 HPNPKHVLVIGGG-DGGVLREVLKHK--SVEKATLVDID-EKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENT 145 (270)
T ss_pred CCCCCEEEEEcCC-chHHHHHHHhCC--CcceEEEEeCC-HHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCC
Confidence 4568899999986 898887776542 25789999999 999999999885 1 2 256999999999998765678
Q ss_pred ccEEEEcCCCCC----cc-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDI----DG-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~----~~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
||+|++|..... .. ..++++.+.+. |+| ||++++.
T Consensus 146 yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~--L~p-gG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAETLFTKEFYELLKKA--LNE-DGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCCCCcccchhHHHHHHHHHHH--hCC-CcEEEEc
Confidence 999999986311 11 36778899998 876 8888875
No 69
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=1.3e-09 Score=90.90 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
++..+||||||| +|.+++.||...+ ++.+++||++ +.+++.|++++. ++ .+++++++|+.++++.. .+.+|
T Consensus 15 ~~~~~ilDiGcG-~G~~~~~la~~~p--~~~v~gvD~~-~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 15 NKAPLHLEIGCG-KGRFLIDMAKQNP--DKNFLGIEIH-TPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCCceEEEeCCC-ccHHHHHHHHhCC--CCCEEEEEee-HHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCcee
Confidence 456789999997 8999999998654 5899999999 999999999886 66 58999999999876443 24799
Q ss_pred EEEEcCCCC---------CccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 115 FVLIDCNID---------IDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 115 ~VfiD~~k~---------~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
.|+++.+-. .-.+..+++.+.+. |+| ||.+.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~--Lkp-gG~l~ 129 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANV--LKK-GGVIH 129 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHH--hCC-CCEEE
Confidence 999975320 01236789999998 887 66654
No 70
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.10 E-value=4.6e-10 Score=103.25 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=91.3
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhc--cc-CCcEEEEEcchhhhhhhcC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLG--RY-ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~~L~~~~ 110 (220)
+....+.++||++-| +||.+|++.|.+ |+ +||+||.+ ...++.|++|++ |+ .+++.++++|+.++|....
T Consensus 212 l~~~~~GkrvLNlFs-YTGgfSv~Aa~g----GA~~vt~VD~S-~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 212 LGELAAGKRVLNLFS-YTGGFSVHAALG----GASEVTSVDLS-KRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HhhhccCCeEEEecc-cCcHHHHHHHhc----CCCceEEEecc-HHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 444445899999997 599999988775 44 99999999 999999999998 66 3669999999999997763
Q ss_pred ---CCccEEEEcCCCC----------CccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 111 ---RGADFVLIDCNID----------IDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 111 ---~~~D~VfiD~~k~----------~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..||+||+|++.= ..+|.+.+..+.+. |+| ||++++-+...+
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i--L~p-gG~l~~~s~~~~ 340 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL--LAP-GGTLVTSSCSRH 340 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH--cCC-CCEEEEEecCCc
Confidence 4899999999870 15788889999998 876 777777666543
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.09 E-value=2.8e-09 Score=90.87 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHhhC--CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 25 EPDVGEFISALAAGN--NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 25 ~p~~~~~L~~La~~~--~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.|+...++..+.... ++.+|||+||| +|..++.++...+ +.+++++|.+ +.+++.|++++. ++ ++++++++
T Consensus 70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G-~G~~~~~l~~~~~--~~~v~~iD~~-~~~~~~a~~~~~~~~~-~~~~~~~~ 144 (251)
T TIGR03534 70 RPDTEELVEAALERLKKGPLRVLDLGTG-SGAIALALAKERP--DARVTAVDIS-PEALAVARKNAARLGL-DNVTFLQS 144 (251)
T ss_pred CCChHHHHHHHHHhcccCCCeEEEEeCc-HhHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCC-CeEEEEEC
Confidence 345555655555433 35689999997 9999999998754 4799999999 999999999997 55 47999999
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+.+.++ .++||+|+.+.+-.. ..|..+++.+.+. |+| ||.+++.
T Consensus 145 d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~--L~~-gG~~~~~ 216 (251)
T TIGR03534 145 DWFEPLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL--LKP-GGWLLLE 216 (251)
T ss_pred chhccCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh--ccc-CCEEEEE
Confidence 9987553 368999998765300 0134567778887 876 7777765
No 72
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.09 E-value=1.7e-09 Score=97.24 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=91.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..+.|..+..+..++...+.+.|||+||| +|..++.++. .+.+++++|.| +.+++.|++|++ ++.+ +++++
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cG-tG~~lieaa~----~~~~v~g~Di~-~~~~~~a~~nl~~~g~~~-i~~~~ 236 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCG-TGGFLIEAGL----MGAKVIGCDID-WKMVAGARINLEHYGIED-FFVKR 236 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCC-CCHHHHHHHH----hCCeEEEEcCC-HHHHHHHHHHHHHhCCCC-CeEEe
Confidence 35677888888888877788899999997 8988765443 27899999999 999999999997 6644 99999
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+.++ |...+.||+|+.|++-.. ..|.+.++.+.+. |+| ||.+++
T Consensus 237 ~D~~~l-~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~--Lk~-gG~lv~ 292 (329)
T TIGR01177 237 GDATKL-PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEV--LKS-EGWIVY 292 (329)
T ss_pred cchhcC-CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHH--ccC-CcEEEE
Confidence 999873 432468999999965300 1268889999998 876 776655
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.08 E-value=2.3e-09 Score=92.76 Aligned_cols=111 Identities=11% Similarity=0.081 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 25 EPDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 25 ~p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
.+.....+..|.. ..+.++|||+||| +|+.++.++.. . ..+|+++|+| +.+++.|++|++ ++.+++++..++
T Consensus 103 h~tt~~~l~~l~~~~~~~~~VLDiGcG-sG~l~i~~~~~-g--~~~v~giDis-~~~l~~A~~n~~~~~~~~~~~~~~~~ 177 (250)
T PRK00517 103 HPTTRLCLEALEKLVLPGKTVLDVGCG-SGILAIAAAKL-G--AKKVLAVDID-PQAVEAARENAELNGVELNVYLPQGD 177 (250)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCc-HHHHHHHHHHc-C--CCeEEEEECC-HHHHHHHHHHHHHcCCCceEEEccCC
Confidence 3444555555554 3467899999997 89998876652 2 3479999999 999999999997 554556665543
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. +||+|+.+... ..+..+++.+.+. |+| ||.++...+..
T Consensus 178 ~---------~fD~Vvani~~--~~~~~l~~~~~~~--Lkp-gG~lilsgi~~ 216 (250)
T PRK00517 178 L---------KADVIVANILA--NPLLELAPDLARL--LKP-GGRLILSGILE 216 (250)
T ss_pred C---------CcCEEEEcCcH--HHHHHHHHHHHHh--cCC-CcEEEEEECcH
Confidence 2 79999988766 6677888999998 876 88888765553
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=3.7e-09 Score=86.09 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCc-EEEEEcchhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANC-IEFVKGDAQK 104 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~-Ve~v~gda~~ 104 (220)
...+|.......+.++|||+||| +|+.++.|+.. +.+++++|.+ +++++.+++++. ++.++ ++++++|..+
T Consensus 11 ~~~~l~~~~~~~~~~~vLd~G~G-~G~~~~~l~~~----~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 84 (188)
T PRK14968 11 DSFLLAENAVDKKGDRVLEVGTG-SGIVAIVAAKN----GKKVVGVDIN-PYAVECAKCNAKLNNIRNNGVEVIRSDLFE 84 (188)
T ss_pred hHHHHHHhhhccCCCEEEEEccc-cCHHHHHHHhh----cceEEEEECC-HHHHHHHHHHHHHcCCCCcceEEEeccccc
Confidence 34556666666788899999996 99999988874 6899999999 999999999987 55333 8999999877
Q ss_pred hhhhcCCCccEEEEcCCCCC----------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDCNIDI----------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~----------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++. ..||+|+.+.+-.. ..+..+++.+.+. |+|.|.+++..
T Consensus 85 ~~~~--~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--Lk~gG~~~~~~ 148 (188)
T PRK14968 85 PFRG--DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRY--LKPGGRILLLQ 148 (188)
T ss_pred cccc--cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHh--cCCCeEEEEEE
Confidence 5533 47999998754300 1135578888888 88744444444
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.08 E-value=2.9e-09 Score=94.14 Aligned_cols=117 Identities=10% Similarity=0.058 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 24 KEPDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 24 ~~p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
..|.+.-.+..|.. ..+.++|||+||| +|+.++.++.. . .++|+++|.+ +.+++.|++|+. ++.+++++..+
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcG-sG~lai~aa~~-g--~~~V~avDid-~~al~~a~~n~~~n~~~~~~~~~~~ 216 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCG-SGILSIAALKL-G--AAKVVGIDID-PLAVESARKNAELNQVSDRLQVKLI 216 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCC-hhHHHHHHHHc-C--CCeEEEEECC-HHHHHHHHHHHHHcCCCcceEEEec
Confidence 33444444444443 2356899999997 89999887753 2 4699999999 999999999997 66667888887
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.... ..++||+|+.+... ..+.+++..+.+. |+| ||.++.-.++
T Consensus 217 ~~~~~---~~~~fDlVvan~~~--~~l~~ll~~~~~~--Lkp-gG~li~sgi~ 261 (288)
T TIGR00406 217 YLEQP---IEGKADVIVANILA--EVIKELYPQFSRL--VKP-GGWLILSGIL 261 (288)
T ss_pred ccccc---cCCCceEEEEecCH--HHHHHHHHHHHHH--cCC-CcEEEEEeCc
Confidence 73332 24689999998776 6677888999888 876 8888876655
No 76
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.08 E-value=2.4e-09 Score=99.96 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc---CCCc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD---YRGA 113 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~---~~~~ 113 (220)
.+..+|||+||| +|..|+.||.. ..+|+++|.+ +++++.|++|++ ++ ++++++++|+.+.++.. .+.|
T Consensus 296 ~~~~~VLDlgcG-tG~~sl~la~~----~~~V~gvD~s-~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 296 QPGDRVLDLFCG-LGNFTLPLARQ----AAEVVGVEGV-EAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCCEEEEEecc-CCHHHHHHHHh----CCEEEEEeCC-HHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCC
Confidence 456899999997 99999999875 4799999999 999999999997 55 57999999998876432 3579
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+|++|.+. ....+.++.+.+. .|++-+.|.-|.
T Consensus 369 D~Vi~dPPr--~g~~~~~~~l~~~---~~~~ivyvSCnp 402 (443)
T PRK13168 369 DKVLLDPPR--AGAAEVMQALAKL---GPKRIVYVSCNP 402 (443)
T ss_pred CEEEECcCC--cChHHHHHHHHhc---CCCeEEEEEeCh
Confidence 999999998 6566778777764 464555555444
No 77
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.08 E-value=2.7e-09 Score=88.98 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=99.1
Q ss_pred HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 29 GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
-.+...|.. .....++||+-+| +|..++ +|+.....+++.||.| .+.....++|++ +...+++++.+|+...
T Consensus 31 EalFNil~~~~i~g~~~LDlFAG-SGaLGl---EAlSRGA~~~~~vE~~-~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAG-SGALGL---EALSRGAARVVFVEKD-RKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred HHHHHhccccccCCCEEEEecCC-ccHhHH---HHHhCCCceEEEEecC-HHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 345555555 3788999999876 787777 4555546789999999 999999999998 5558899999999999
Q ss_pred hhhcCCC--ccEEEEcCCCCCccHHHHHHHHH--hhcCCCCCCEEEEEecCCCCCCccceEEEee-ecCCcEEEEEEeec
Q 042616 106 LMGDYRG--ADFVLIDCNIDIDGHKNVFRAAK--ESVMHGSGAGVIVGYNALPKGSWRGYKTHFL-PIGEGLLVTRIGEN 180 (220)
Q Consensus 106 L~~~~~~--~D~VfiD~~k~~~~y~~~l~~l~--~~~~L~~~Ggviv~dNv~~~g~~~~~~s~~l-Pig~Gl~v~~~~~~ 180 (220)
|+.+... ||+||+|++-..+.+......+. ..++|+| +++|++..--- +-+ ..-.++.+.+.+..
T Consensus 106 L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~-~~~iv~E~~~~---------~~~~~~~~~~~~~r~k~y 175 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKP-GALIVVEHDKD---------VELPELPANFELHREKKY 175 (187)
T ss_pred HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCC-CcEEEEEeCCC---------cCccccCCCeEEEEEeec
Confidence 8877544 99999999984345533444444 6676765 99998873211 123 34556666665544
Q ss_pred CC
Q 042616 181 SD 182 (220)
Q Consensus 181 ~~ 182 (220)
|.
T Consensus 176 G~ 177 (187)
T COG0742 176 GQ 177 (187)
T ss_pred CC
Confidence 44
No 78
>PRK03612 spermidine synthase; Provisional
Probab=99.06 E-value=2.5e-09 Score=101.90 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=83.3
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh--c-----cc-CCcEEEEEcchhhhhhh
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL--G-----RY-ANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l--~-----g~-~~~Ve~v~gda~~~L~~ 108 (220)
...++++||+||+| .|..+..+++. +...+|+.||.| ++.++.||+++ . .+ ..+++++++|+.+++..
T Consensus 294 ~~~~~~rVL~IG~G-~G~~~~~ll~~--~~v~~v~~VEid-~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~ 369 (521)
T PRK03612 294 ASARPRRVLVLGGG-DGLALREVLKY--PDVEQVTLVDLD-PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK 369 (521)
T ss_pred hCCCCCeEEEEcCC-ccHHHHHHHhC--CCcCeEEEEECC-HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh
Confidence 34678999999986 89988877752 213799999999 99999999953 2 12 25799999999999876
Q ss_pred cCCCccEEEEcCCCCC-----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 109 DYRGADFVLIDCNIDI-----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~-----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..++||+|++|..... ..| .++++.+.+. |+| ||++++.
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~--L~p-gG~lv~~ 414 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRR--LAP-DGLLVVQ 414 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHh--cCC-CeEEEEe
Confidence 5678999999976411 122 4688999998 876 8888875
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.06 E-value=1.6e-09 Score=90.65 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=81.6
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
...|...+++ ...++.+|||+||| +|..+++||+. +.+|+++|.+ +.+++.|+++.+ ++ .+++++++
T Consensus 17 ~~~~~l~~~l----~~~~~~~vLDiGcG-~G~~a~~La~~----g~~V~gvD~S-~~~i~~a~~~~~~~~~-~~v~~~~~ 85 (197)
T PRK11207 17 RTHSEVLEAV----KVVKPGKTLDLGCG-NGRNSLYLAAN----GFDVTAWDKN-PMSIANLERIKAAENL-DNLHTAVV 85 (197)
T ss_pred CChHHHHHhc----ccCCCCcEEEECCC-CCHHHHHHHHC----CCEEEEEeCC-HHHHHHHHHHHHHcCC-CcceEEec
Confidence 3445444444 34467899999997 99999999973 6799999999 999999999886 55 46999999
Q ss_pred chhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 101 DAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
|..+.- ..++||+|+.-... +..+...+++.+.+. |+| ||.+
T Consensus 86 d~~~~~--~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~--Lkp-gG~~ 130 (197)
T PRK11207 86 DLNNLT--FDGEYDFILSTVVLMFLEAKTIPGLIANMQRC--TKP-GGYN 130 (197)
T ss_pred ChhhCC--cCCCcCEEEEecchhhCCHHHHHHHHHHHHHH--cCC-CcEE
Confidence 987642 24679999854321 113457889999998 886 7764
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=99.06 E-value=4.6e-09 Score=89.25 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=79.8
Q ss_pred HHHHHHHh---hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh
Q 042616 30 EFISALAA---GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL 106 (220)
Q Consensus 30 ~~L~~La~---~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L 106 (220)
++|...+. ..+..+|||+||| +|..++.++.. . .++|+++|.+ +.+++.|++|++...-+++++++|..+.+
T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG-~G~~~~~la~~-~--~~~v~~vD~s-~~~l~~a~~n~~~~~~~~~~~~~d~~~~~ 97 (223)
T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTG-SGALAVAAAAA-G--AGSVTAVDIS-RRAVRSARLNALLAGVDVDVRRGDWARAV 97 (223)
T ss_pred HHHHHHHHhcccCCCCeEEEecCC-HHHHHHHHHHc-C--CCeEEEEECC-HHHHHHHHHHHHHhCCeeEEEECchhhhc
Confidence 44444433 2445799999997 89999988864 1 3599999999 99999999998722235899999998765
Q ss_pred hhcCCCccEEEEcCCCCC--c--------------------cHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 107 MGDYRGADFVLIDCNIDI--D--------------------GHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~--~--------------------~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ .++||+|+.+.+-.. . .+..+++.+.+. |++ ||.+++
T Consensus 98 ~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--Lk~-gG~l~~ 157 (223)
T PRK14967 98 E--FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL--LAP-GGSLLL 157 (223)
T ss_pred c--CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh--cCC-CcEEEE
Confidence 4 368999999864200 0 145567778887 876 777665
No 81
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.06 E-value=8.6e-10 Score=79.34 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=73.6
Q ss_pred EEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCC-
Q 042616 45 VMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNID- 123 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~- 123 (220)
||+||| .|..+..|+.. .+.+|+++|++ +++++.+++.... .++.++++|+.++ |-..++||+|+.-.--.
T Consensus 1 LdiG~G-~G~~~~~l~~~---~~~~v~~~D~~-~~~~~~~~~~~~~--~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCG-TGRFAAALAKR---GGASVTGIDIS-EEMLEQARKRLKN--EGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-T-TSHHHHHHHHT---TTCEEEEEES--HHHHHHHHHHTTT--STEEEEESBTTSS-SS-TT-EEEEEEESHGGG
T ss_pred CEecCc-CCHHHHHHHhc---cCCEEEEEeCC-HHHHHHHHhcccc--cCchheeehHHhC-ccccccccccccccceee
Confidence 799997 99999999986 27899999999 9999999998863 3466999998886 54468999999766441
Q ss_pred CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 124 IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 124 ~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-.+...+++.+.+. |+| ||.+++
T Consensus 73 ~~~~~~~l~e~~rv--Lk~-gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRV--LKP-GGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHH--EEE-EEEEEE
T ss_pred ccCHHHHHHHHHHH--cCc-CeEEeC
Confidence 14678899999999 886 888774
No 82
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.05 E-value=1.4e-09 Score=97.82 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+..+||||||| +|..+..|+. .+++|++||.+ +++++.|+++.+ +...+|++++++++++ +...+.||+|+
T Consensus 131 ~g~~ILDIGCG-~G~~s~~La~----~g~~V~GID~s-~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCG-GGLLSEPLAR----MGATVTGVDAV-DKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCC-CCHHHHHHHH----cCCEEEEEeCC-HHHHHHHHHHHHhcCcccceeEEecCHHHh-hhccCCCCEEE
Confidence 45689999997 8999998875 27899999999 999999998875 4446899999999875 33246899999
Q ss_pred EcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.-.-- .-.+....++.+.+. |+| ||.+++..+
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~--LkP-GG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSAL--TIP-NGATVLSTI 236 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHH--cCC-CcEEEEEEC
Confidence 65422 114667899999998 887 777776643
No 83
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.05 E-value=1.6e-09 Score=91.34 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~ 110 (220)
+...+....++.+|||+||| +|+.+..|+..++ +.++++||++ +++++.|++++ .+++++++|+.+ |...
T Consensus 34 ~~~~l~~~~~~~~VLDiGCG-~G~~~~~L~~~~~--~~~v~giDiS-~~~l~~A~~~~----~~~~~~~~d~~~--~~~~ 103 (204)
T TIGR03587 34 FARALNRLPKIASILELGAN-IGMNLAALKRLLP--FKHIYGVEIN-EYAVEKAKAYL----PNINIIQGSLFD--PFKD 103 (204)
T ss_pred HHHHHHhcCCCCcEEEEecC-CCHHHHHHHHhCC--CCeEEEEECC-HHHHHHHHhhC----CCCcEEEeeccC--CCCC
Confidence 33334445567899999997 9999999988654 5899999999 99999999875 347788999877 3335
Q ss_pred CCccEEEEcCCC---CCccHHHHHHHHHhh
Q 042616 111 RGADFVLIDCNI---DIDGHKNVFRAAKES 137 (220)
Q Consensus 111 ~~~D~VfiD~~k---~~~~y~~~l~~l~~~ 137 (220)
++||+|+...-. +.......++.+.+.
T Consensus 104 ~sfD~V~~~~vL~hl~p~~~~~~l~el~r~ 133 (204)
T TIGR03587 104 NFFDLVLTKGVLIHINPDNLPTAYRELYRC 133 (204)
T ss_pred CCEEEEEECChhhhCCHHHHHHHHHHHHhh
Confidence 789999976643 112346667777776
No 84
>PRK08317 hypothetical protein; Provisional
Probab=99.05 E-value=4.6e-09 Score=87.95 Aligned_cols=115 Identities=18% Similarity=0.136 Sum_probs=87.0
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~ 109 (220)
+.+..++...++.+|||+||| +|..+..++....+ .++++++|.+ +..++.|+++......+++++++|+.+. +..
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G-~G~~~~~~a~~~~~-~~~v~~~d~~-~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCG-PGNDARELARRVGP-EGRVVGIDRS-EAMLALAKERAAGLGPNVEFVRGDADGL-PFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCC-CCHHHHHHHHhcCC-CcEEEEEeCC-HHHHHHHHHHhhCCCCceEEEecccccC-CCC
Confidence 334445566778899999997 89999999987643 6899999999 9999999998554446799999998763 222
Q ss_pred CCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 YRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 ~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+.||+|+..... .-.+....++.+.+. |+| ||.+++..
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~--L~~-gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARV--LRP-GGRVVVLD 124 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHH--hcC-CcEEEEEe
Confidence 4689999987533 114567889999998 887 77666543
No 85
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.05 E-value=3.8e-09 Score=100.39 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=79.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+.+|||+||| +|+.++.|+...+ +.+|+++|.+ +.+++.|++|+. ++.++++++++|..+.++ .++||+|+.
T Consensus 139 ~~~VLDlG~G-sG~iai~la~~~p--~~~v~avDis-~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTG-SGCIAISLLCELP--NANVIATDIS-LDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVS 212 (506)
T ss_pred CCEEEEccCc-hhHHHHHHHHHCC--CCeEEEEECC-HHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEE
Confidence 4689999997 9999999998764 5899999999 999999999987 666789999999877554 357999998
Q ss_pred cCCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.+--. ..|..+++.+.+. |+| ||.+++.
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~--L~~-gG~l~lE 268 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQF--LKP-NGKIILE 268 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHh--ccC-CCEEEEE
Confidence 654200 1244556667777 876 7777764
No 86
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=4.5e-09 Score=85.53 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=80.3
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
.+...+..+||||||| +|..|..|+.. +++|++||.| +.+++.+++++... ++++++++|+.++... ...||
T Consensus 8 ~~~~~~~~~vLEiG~G-~G~lt~~l~~~----~~~v~~vE~~-~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~-~~~~d 79 (169)
T smart00650 8 AANLRPGDTVLEIGPG-KGALTEELLER----AARVTAIEID-PRLAPRLREKFAAA-DNLTVIHGDALKFDLP-KLQPY 79 (169)
T ss_pred hcCCCCcCEEEEECCC-ccHHHHHHHhc----CCeEEEEECC-HHHHHHHHHHhccC-CCEEEEECchhcCCcc-ccCCC
Confidence 3344566799999997 99999998874 5799999999 99999999998753 5899999999986432 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.||.+.+- ....+.+..+.....+. .+|++++..-
T Consensus 80 ~vi~n~Py--~~~~~~i~~~l~~~~~~-~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLPY--NISTPILFKLLEEPPAF-RDAVLMVQKE 114 (169)
T ss_pred EEEECCCc--ccHHHHHHHHHhcCCCc-ceEEEEEEHH
Confidence 99998876 44456666665542232 4777776544
No 87
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.03 E-value=6e-09 Score=95.10 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHhh-CC--CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 24 KEPDVGEFISALAAG-NN--AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-~~--a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
+.+.+.+-|...+.. .+ ..++||++|| +|..|+.|+.. ..+|++||.+ +.+++.|++|++ ++ ++++++
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G-~G~~sl~la~~----~~~v~~vE~~-~~ai~~a~~N~~~~~~-~~v~~~ 259 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGSKGDLLELYCG-NGNFTLALARN----FRRVLATEIS-KPSVAAAQYNIAANGI-DNVQII 259 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCeEEEEecc-ccHHHHHHHhh----CCEEEEEECC-HHHHHHHHHHHHHhCC-CcEEEE
Confidence 344455444444332 22 3579999997 99999988875 3589999999 999999999997 66 589999
Q ss_pred EcchhhhhhhcC---------------CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 99 KGDAQKLLMGDY---------------RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 99 ~gda~~~L~~~~---------------~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+|+.++++.+. ..||+||+|+++ .+.+.+.++.+.+ +++=++|.-|-
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~~-----~~~ivyvSC~p 322 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQA-----YERILYISCNP 322 (362)
T ss_pred ECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHHc-----cCCEEEEEeCH
Confidence 999999876531 148999999997 4556777777764 33555555544
No 88
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.03 E-value=2.3e-09 Score=89.56 Aligned_cols=106 Identities=10% Similarity=-0.007 Sum_probs=78.1
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+++.. +...++.+|||+||| +|..+++||.. +.+|+++|.+ +.+++.++++.+ ++ ++++..+|.... +
T Consensus 21 ~l~~~-~~~~~~~~vLDiGcG-~G~~a~~la~~----g~~V~~iD~s-~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~ 90 (195)
T TIGR00477 21 AVREA-VKTVAPCKTLDLGCG-QGRNSLYLSLA----GYDVRAWDHN-PASIASVLDMKARENL--PLRTDAYDINAA-A 90 (195)
T ss_pred HHHHH-hccCCCCcEEEeCCC-CCHHHHHHHHC----CCeEEEEECC-HHHHHHHHHHHHHhCC--CceeEeccchhc-c
Confidence 44433 355678899999997 99999999973 6799999999 999999998876 54 377888887542 2
Q ss_pred hcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEE-EEE
Q 042616 108 GDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGV-IVG 149 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggv-iv~ 149 (220)
+.++||+|+.-..- +..+...+++.+.+. |+| ||+ ++.
T Consensus 91 -~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~lli~ 132 (195)
T TIGR00477 91 -LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAH--TRP-GGYNLIV 132 (195)
T ss_pred -ccCCCCEEEEecccccCCHHHHHHHHHHHHHH--hCC-CcEEEEE
Confidence 24679999754321 113557889999998 886 776 443
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.01 E-value=4.8e-09 Score=96.34 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=85.8
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC--CcEEEEEcchhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA--NCIEFVKGDAQK 104 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~--~~Ve~v~gda~~ 104 (220)
.+||..........+|||+||| +|..++.++...+ ..+|+++|.+ +.+++.|++|++ +.. .+++++.+|+.+
T Consensus 217 trllL~~lp~~~~~~VLDLGCG-tGvi~i~la~~~P--~~~V~~vD~S-~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCG-NGVIGLTLLDKNP--QAKVVFVDES-PMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred HHHHHHhCCcccCCeEEEEecc-ccHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 3444444344444689999997 9999999998754 5899999999 999999999996 322 479999999876
Q ss_pred hhhhcCCCccEEEEcCCCCCc------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 105 LLMGDYRGADFVLIDCNIDID------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.++ ..+||+|+.+.+-+.. ...+.++.+.+. |+|.|-++++.|-.
T Consensus 293 ~~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~--LkpGG~L~iV~nr~ 343 (378)
T PRK15001 293 GVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC--LKINGELYIVANRH 343 (378)
T ss_pred cCC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh--cccCCEEEEEEecC
Confidence 553 2579999998774222 124667888888 88856566665543
No 90
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=3e-09 Score=92.98 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=94.0
Q ss_pred HHHHHhcC-CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--
Q 042616 13 YLQALKMG-KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-- 89 (220)
Q Consensus 13 Y~~~l~~~-~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-- 89 (220)
|--.|+-+ |..-.|+.+..++.| ...+...|+|-||| +|..+.+|++|..+ -|||++.|.+ +.+++.|++.|+
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L-~i~PGsvV~EsGTG-SGSlShaiaraV~p-tGhl~tfefH-~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSML-EIRPGSVVLESGTG-SGSLSHAIARAVAP-TGHLYTFEFH-ETRAEKALEEFREH 153 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHh-cCCCCCEEEecCCC-cchHHHHHHHhhCc-CcceEEEEec-HHHHHHHHHHHHHh
Confidence 33344444 345566666666655 89999999999997 89999999999988 8999999999 999999999997
Q ss_pred ccCCcEEEEEcchhhh--hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 90 RYANCIEFVKGDAQKL--LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 90 g~~~~Ve~v~gda~~~--L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++.++|++++-|.... +.+ ...+|.||+|-+. .. ..+..+.+. |+..||.+++
T Consensus 154 gi~~~vt~~hrDVc~~GF~~k-s~~aDaVFLDlPa--Pw--~AiPha~~~--lk~~g~r~cs 208 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSGFLIK-SLKADAVFLDLPA--PW--EAIPHAAKI--LKDEGGRLCS 208 (314)
T ss_pred CCCcceEEEEeecccCCcccc-ccccceEEEcCCC--hh--hhhhhhHHH--hhhcCceEEe
Confidence 8889999999987652 211 4679999999987 21 223333333 4445666665
No 91
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=7.2e-09 Score=89.87 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=85.6
Q ss_pred hhHHHHHHHHH---hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcc
Q 042616 26 PDVGEFISALA---AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGD 101 (220)
Q Consensus 26 p~~~~~L~~La---~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gd 101 (220)
|+...++..+. ...++.+|||+||| +|..++.|+...+ ..+++++|.+ +.+++.|+++++ ....+++++++|
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~G-sG~~~~~la~~~~--~~~v~~iDis-~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTG-SGAIALALAKERP--DAEVTAVDIS-PEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCc-HHHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 34444444443 24567899999997 9999999998764 5899999999 999999999997 555689999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+.++ .++||+|+.+.+--. ..|..+++.+.+. |+| ||.+++.
T Consensus 167 ~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~--Lk~-gG~l~~e 237 (275)
T PRK09328 167 WFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY--LKP-GGWLLLE 237 (275)
T ss_pred ccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh--ccc-CCEEEEE
Confidence 866443 368999998754200 1245566777777 876 7877764
No 92
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.99 E-value=1.1e-08 Score=86.01 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=83.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...+..+|||+||| .|..+..++...++ ..+++++|.+ +..++.+++++. ++..+++++.+|+.+.. ...+.||
T Consensus 48 ~~~~~~~vldiG~G-~G~~~~~l~~~~~~-~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 123 (239)
T PRK00216 48 GVRPGDKVLDLACG-TGDLAIALAKAVGK-TGEVVGLDFS-EGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFD 123 (239)
T ss_pred CCCCCCeEEEeCCC-CCHHHHHHHHHcCC-CCeEEEEeCC-HHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCcc
Confidence 44456899999997 89999999988753 6899999999 999999999986 35567999999998743 2246899
Q ss_pred EEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++.... ...+....++.+.+. |+| ||.+++
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~--L~~-gG~li~ 156 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRV--LKP-GGRLVI 156 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHh--ccC-CcEEEE
Confidence 99976432 114678889999998 876 666554
No 93
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.99 E-value=6.7e-09 Score=90.71 Aligned_cols=107 Identities=15% Similarity=0.060 Sum_probs=81.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+..+||||||| +|..+..|+.. .+++|+++|.+ +.+++.|++++.. .++|+++++|+.+. +...++||+|
T Consensus 49 ~l~~~~~VLDiGcG-~G~~a~~la~~---~~~~v~giD~s-~~~~~~a~~~~~~-~~~i~~~~~D~~~~-~~~~~~FD~V 121 (263)
T PTZ00098 49 ELNENSKVLDIGSG-LGGGCKYINEK---YGAHVHGVDIC-EKMVNIAKLRNSD-KNKIEFEANDILKK-DFPENTFDMI 121 (263)
T ss_pred CCCCCCEEEEEcCC-CChhhHHHHhh---cCCEEEEEECC-HHHHHHHHHHcCc-CCceEEEECCcccC-CCCCCCeEEE
Confidence 45677899999997 89999888764 26799999999 9999999998764 36799999998753 2224689999
Q ss_pred EE-cCCCCC--ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LI-DCNIDI--DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fi-D~~k~~--~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+. ++-... .+...+++.+.+. |+| ||.+++.+..
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~--LkP-GG~lvi~d~~ 158 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKW--LKP-NGILLITDYC 158 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHH--cCC-CcEEEEEEec
Confidence 97 432211 2567889999999 887 6666655443
No 94
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.99 E-value=1e-08 Score=95.01 Aligned_cols=120 Identities=10% Similarity=0.068 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 24 KEPDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
-.|+...++..+... .+..+|||+||| +|..++.|+...+ +.+|+++|.+ +++++.|++|++....+++++++|.
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcG-SG~IaiaLA~~~p--~a~VtAVDiS-~~ALe~AreNa~~~g~rV~fi~gDl 309 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTG-SGAVAVTVALERP--DAFVRASDIS-PPALETARKNAADLGARVEFAHGSW 309 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeCh-hhHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCCcEEEEEcch
Confidence 345556666655443 345789999997 9999998887543 5899999999 9999999999973334799999998
Q ss_pred hhhhhhcCCCccEEEEcCCCCC--------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMGDYRGADFVLIDCNIDI--------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~--------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+......++||+|+.+.+.-. ..|.++++.+.+. |+| ||.+++.
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~--Lkp-gG~lilE 380 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDR--LAE-GGFLLLE 380 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHh--cCC-CcEEEEE
Confidence 6532111357999999876400 0244566666777 876 7776653
No 95
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.98 E-value=1.4e-08 Score=88.35 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=76.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEc
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLID 119 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD 119 (220)
+.+|||+||| +|..++.|+...+ +.+|+++|.+ +.+++.|++|++.. .++++++|..+.++.. .+.||+|+.|
T Consensus 87 ~~~vLDlg~G-sG~i~l~la~~~~--~~~v~~vDis-~~al~~A~~N~~~~--~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCG-SGAVGAALAAALD--GIELHAADID-PAAVRCARRNLADA--GGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCc-hHHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHc--CCEEEEeechhhcchhcCCCEeEEEEC
Confidence 3589999997 9999999987654 4699999999 99999999999732 2588999998766532 3579999999
Q ss_pred CCCCC---------------------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDI---------------------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~---------------------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+--. ..|.++++.+.+. |+| ||.++..
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~--L~~-gG~l~l~ 215 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDW--LAP-GGHLLVE 215 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 85310 0134666777777 876 6666654
No 96
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.98 E-value=1.4e-09 Score=80.90 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=70.7
Q ss_pred EEEEcCCchHHHHHHHHHHcCCC-CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE-cCC
Q 042616 44 IVMACSSIAVSRTLALVAAARQT-GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI-DCN 121 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~-~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi-D~~ 121 (220)
|||+||| +|..+..++...+.. ..++++||.+ +++++.++++.....-+++++++|+.+ ++...++||+|+. ...
T Consensus 1 ILDlgcG-~G~~~~~l~~~~~~~~~~~~~gvD~s-~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCG-TGRVTRALARRFDAGPSSRVIGVDIS-PEMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-T-TSHHHHHHHHHS-----SEEEEEES--HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEEEE-TTG
T ss_pred CEEeecC-CcHHHHHHHHHhhhcccceEEEEECC-HHHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEEEEcCCc
Confidence 7999997 999999999887321 2799999999 999999999986221379999999988 4455679999998 441
Q ss_pred C---CCccHHHHHHHHHhhcCCCCCCE
Q 042616 122 I---DIDGHKNVFRAAKESVMHGSGAG 145 (220)
Q Consensus 122 k---~~~~y~~~l~~l~~~~~L~~~Gg 145 (220)
- ...+....++.+.+. |+| ||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~--l~p-gG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARL--LRP-GG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHT--EEE-EE
T ss_pred cCCCCHHHHHHHHHHHHHH--hCC-CC
Confidence 2 113457778888887 776 65
No 97
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.98 E-value=5.1e-09 Score=92.40 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=79.8
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+++..+ ...++.+|||+||| +|..+++|+.. +.+|+++|.+ +.+++.++++++ ++ ++++..+|..+..
T Consensus 111 ~~~~~~-~~~~~~~vLDlGcG-~G~~~~~la~~----g~~V~avD~s-~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~- 180 (287)
T PRK12335 111 EVLEAV-QTVKPGKALDLGCG-QGRNSLYLALL----GFDVTAVDIN-QQSLENLQEIAEKENL--NIRTGLYDINSAS- 180 (287)
T ss_pred HHHHHh-hccCCCCEEEeCCC-CCHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHHHHcCC--ceEEEEechhccc-
Confidence 444433 34567799999997 99999999873 6899999999 999999999886 44 6899999886632
Q ss_pred hcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 108 GDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
+.++||+|+.-.-- +..+...+++.+.+. |+| ||+++
T Consensus 181 -~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~--Lkp-gG~~l 220 (287)
T PRK12335 181 -IQEEYDFILSTVVLMFLNRERIPAIIKNMQEH--TNP-GGYNL 220 (287)
T ss_pred -ccCCccEEEEcchhhhCCHHHHHHHHHHHHHh--cCC-CcEEE
Confidence 25789999865421 114567889999998 886 77633
No 98
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.97 E-value=4.7e-09 Score=88.48 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=80.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
++||||||| .|..+..++...+ +.+|+++|.+ ++.++.|+++++ ++.++++++.+|..+. +. .++||+|+.-
T Consensus 1 ~~vLDiGcG-~G~~~~~la~~~~--~~~v~gid~s-~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCG-YGSDLIDLAERHP--HLQLHGYTIS-PEQAEVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCC-CCHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehH
Confidence 579999997 8999999988653 4799999999 999999999986 7778899999998654 22 3589999853
Q ss_pred CCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 120 CNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.-- ...+...+++.+.+. |+| ||.+++.+..
T Consensus 75 ~~l~~~~~~~~~l~~~~~~--Lkp-gG~l~i~~~~ 106 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRH--LKD-GGHLVLADFI 106 (224)
T ss_pred HHHHhCCCHHHHHHHHHHH--cCC-CCEEEEEEcc
Confidence 211 114567899999998 887 7777766553
No 99
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.97 E-value=4e-09 Score=93.52 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=78.9
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhc--ccC-CcEEEEEcchhhhhhhc-
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLG--RYA-NCIEFVKGDAQKLLMGD- 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~--g~~-~~Ve~v~gda~~~L~~~- 109 (220)
+....+.++||++-| .+|.++++.+.+ | .+|++||.+ ...++.|++|++ ++. ++++++.+|+.+++..+
T Consensus 118 v~~~~~gkrvLnlFs-YTGgfsv~Aa~g----GA~~v~~VD~S-~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFS-YTGGFSVAAAAG----GAKEVVSVDSS-KRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHCTTCEEEEET--TTTHHHHHHHHT----TESEEEEEES--HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HHHHcCCCceEEecC-CCCHHHHHHHHC----CCCEEEEEeCC-HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 334456789999997 589888876553 3 479999999 999999999998 664 68999999999988654
Q ss_pred -CCCccEEEEcCCC---CC----ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 -YRGADFVLIDCNI---DI----DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 -~~~~D~VfiD~~k---~~----~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.||+|++|++. .. .+|.+++..+.++ |.| ||+|++-
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l--l~~-gG~l~~~ 237 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKL--LKP-GGLLLTC 237 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 4689999999987 11 4788888888888 876 7776643
No 100
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.97 E-value=1.8e-09 Score=88.37 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=57.2
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC-CC-ccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY-RG-ADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~-~~-~D~Vf 117 (220)
+.|+|+.|| .|-.|+.+|.. ..+|++||.| +.+++.|+.|.+ |+.++|++++||+.+.++.+. .. +|+||
T Consensus 1 ~~vlD~fcG-~GGNtIqFA~~----~~~Viaidid-~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCG-VGGNTIQFART----FDRVIAIDID-PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-T-TSHHHHHHHHT----T-EEEEEES--HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccC-cCHHHHHHHHh----CCeEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 368998876 89999999985 5699999999 999999999999 778899999999999987753 22 79999
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
++++=
T Consensus 75 lSPPW 79 (163)
T PF09445_consen 75 LSPPW 79 (163)
T ss_dssp E---B
T ss_pred ECCCC
Confidence 99854
No 101
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.97 E-value=7.1e-09 Score=89.17 Aligned_cols=112 Identities=10% Similarity=0.058 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh
Q 042616 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK 104 (220)
Q Consensus 25 ~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~ 104 (220)
....++.|..+....++.+|||+||| +|..+..|+. .+.+|+++|.+ +.+++.|+++.. .+.++++|+.+
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~----~~~~v~~~D~s-~~~l~~a~~~~~----~~~~~~~d~~~ 96 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCG-PGWMSRYWRE----RGSQVTALDLS-PPMLAQARQKDA----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCC-CCHHHHHHHH----cCCeEEEEECC-HHHHHHHHhhCC----CCCEEEcCccc
Confidence 34455555554455567899999997 8998888865 26899999999 999999998753 35688999877
Q ss_pred hhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 105 LLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
. |...++||+|+...... ..+....+..+.+. |+| ||.+++-
T Consensus 97 ~-~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~--Lk~-gG~l~~~ 139 (251)
T PRK10258 97 L-PLATATFDLAWSNLAVQWCGNLSTALRELYRV--VRP-GGVVAFT 139 (251)
T ss_pred C-cCCCCcEEEEEECchhhhcCCHHHHHHHHHHH--cCC-CeEEEEE
Confidence 3 33246899999765431 14567889999998 876 8887765
No 102
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.96 E-value=3.8e-09 Score=89.82 Aligned_cols=126 Identities=11% Similarity=0.099 Sum_probs=97.7
Q ss_pred CCCChhhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH
Q 042616 2 SSWSSENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 2 ~~w~~e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
+.|||....+ |-++ .. .-+.=|.+.+...++.+|+|+||| .|-+|-.|++--+ +..|++||.+ ++++
T Consensus 1 ~~W~p~~Yl~-F~~e---Rt-----RPa~dLla~Vp~~~~~~v~DLGCG-pGnsTelL~~RwP--~A~i~GiDsS-~~Ml 67 (257)
T COG4106 1 MDWNPDQYLQ-FEDE---RT-----RPARDLLARVPLERPRRVVDLGCG-PGNSTELLARRWP--DAVITGIDSS-PAML 67 (257)
T ss_pred CCCCHHHHHH-HHHh---cc-----CcHHHHHhhCCccccceeeecCCC-CCHHHHHHHHhCC--CCeEeeccCC-HHHH
Confidence 4688875443 3222 11 123334455577889999999997 9999999998765 6999999999 9999
Q ss_pred HHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCC--ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 82 DASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI--DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 82 ~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~--~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.|++.+ -+.+|..+|..+.-|. .++|++|-.+-. + .++.+.|..+... |.| ||++.+.
T Consensus 68 a~Aa~rl----p~~~f~~aDl~~w~p~--~~~dllfaNAvl-qWlpdH~~ll~rL~~~--L~P-gg~LAVQ 128 (257)
T COG4106 68 AKAAQRL----PDATFEEADLRTWKPE--QPTDLLFANAVL-QWLPDHPELLPRLVSQ--LAP-GGVLAVQ 128 (257)
T ss_pred HHHHHhC----CCCceecccHhhcCCC--Cccchhhhhhhh-hhccccHHHHHHHHHh--hCC-CceEEEE
Confidence 9998776 5789999999998764 789999987743 1 5778899999988 876 9998875
No 103
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.96 E-value=5.8e-09 Score=91.91 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=80.9
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~ 108 (220)
.+...+...+..+||||||| -|..++++|+.- +.+|++|..+ ++..+.|++.++ |+.++|++..+|..++-
T Consensus 53 ~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~---g~~v~gitlS-~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERY---GCHVTGITLS-EEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH-----EEEEEES--HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHc---CcEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 44444456778999999997 899999999863 6899999999 999999999997 88889999999987742
Q ss_pred cCCCccEEE-EcCCC--CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 109 DYRGADFVL-IDCNI--DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 109 ~~~~~D~Vf-iD~~k--~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+||.|+ |+.-- ...+|..+|+.+.+. |+| ||+++.+.+..
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~--Lkp-gG~~~lq~i~~ 169 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRL--LKP-GGRLVLQTITH 169 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHH--SET-TEEEEEEEEEE
T ss_pred --CCCCEEEEEechhhcChhHHHHHHHHHHHh--cCC-CcEEEEEeccc
Confidence 4899987 32211 116889999999999 986 99988876653
No 104
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.95 E-value=3.6e-08 Score=83.66 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+.|...+++.......+..+||||||| +|..+..++.. +.+++++|++ +..++.|++++.....+++++.+++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~----~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~~~~~~~ 104 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCG-GGILSESMARL----GADVTGIDAS-EENIEVARLHALESGLKIDYRQTTA 104 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCC-CCHHHHHHHHc----CCeEEEEcCC-HHHHHHHHHHHHHcCCceEEEecCH
Confidence 4556667788877777778999999997 89998888763 5789999999 9999999998863223689999999
Q ss_pred hhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+......+.||+|+....- ...+....++.+.+. |+| ||.+++.
T Consensus 105 ~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~--L~~-gG~l~v~ 150 (233)
T PRK05134 105 EELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKL--VKP-GGLVFFS 150 (233)
T ss_pred HHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHH--cCC-CcEEEEE
Confidence 88753334789999875432 114567788999998 876 6666654
No 105
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.94 E-value=1.6e-08 Score=84.84 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++++|||+||| +|..+..|+...+ ..+++++|++ +.+++.+++.+. .+++++.+|+.+.. ...++||+|+.
T Consensus 33 ~~~~~vLDlG~G-~G~~~~~l~~~~~--~~~~~~~D~~-~~~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCG-TGYLTRALLKRFP--QAEFIALDIS-AGMLAQAKTKLS---ENVQFICGDAEKLP-LEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCC-ccHHHHHHHHhCC--CCcEEEEeCh-HHHHHHHHHhcC---CCCeEEecchhhCC-CCCCceeEEEE
Confidence 446799999997 9999999998764 4789999999 999999888765 47899999998753 22468999998
Q ss_pred cCCCC-CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNID-IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
...-. ..+....++.+.+. |+| ||.+++.
T Consensus 105 ~~~l~~~~~~~~~l~~~~~~--L~~-~G~l~~~ 134 (240)
T TIGR02072 105 NLALQWCDDLSQALSELARV--LKP-GGLLAFS 134 (240)
T ss_pred hhhhhhccCHHHHHHHHHHH--cCC-CcEEEEE
Confidence 76431 13567889999998 876 7877764
No 106
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.93 E-value=1.9e-08 Score=91.57 Aligned_cols=114 Identities=9% Similarity=0.055 Sum_probs=82.8
Q ss_pred ChhHHHHHH-HHHhhCC--CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 25 EPDVGEFIS-ALAAGNN--AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 25 ~p~~~~~L~-~La~~~~--a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
.+...+.|. ......+ ++++||+||| +|.+++.|+..+ .+|++||.+ +++++.|++|++ ++ ++++++.
T Consensus 179 N~~~~~~l~~~v~~~~~~~~~~vlDl~~G-~G~~sl~la~~~----~~v~~vE~~-~~av~~a~~n~~~~~~-~~v~~~~ 251 (353)
T TIGR02143 179 NAAVNIKMLEWACEVTQGSKGDLLELYCG-NGNFSLALAQNF----RRVLATEIA-KPSVNAAQYNIAANNI-DNVQIIR 251 (353)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEEecc-ccHHHHHHHHhC----CEEEEEECC-HHHHHHHHHHHHHcCC-CcEEEEE
Confidence 344444444 3333222 3579999997 999999998763 589999999 999999999997 66 5799999
Q ss_pred cchhhhhhhc---------C------CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 100 GDAQKLLMGD---------Y------RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~---------~------~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+.++++.. . ..||+||+|+++ .+.....++.+.+ |++=++|.-|
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~l~~-----~~~ivYvsC~ 312 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKLVQA-----YERILYISCN 312 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCCC-CCCcHHHHHHHHc-----CCcEEEEEcC
Confidence 9999988641 1 138999999996 4556777787754 3344444443
No 107
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.93 E-value=1.2e-08 Score=95.62 Aligned_cols=107 Identities=14% Similarity=0.039 Sum_probs=83.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+..+||||||| +|..++.|+... +.+|+++|++ +++++.|+++..+...+++++++|+.+.. ...++||+|
T Consensus 263 ~~~~~~~vLDiGcG-~G~~~~~la~~~---~~~v~gvDiS-~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I 336 (475)
T PLN02336 263 DLKPGQKVLDVGCG-IGGGDFYMAENF---DVHVVGIDLS-VNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVI 336 (475)
T ss_pred CCCCCCEEEEEecc-CCHHHHHHHHhc---CCEEEEEECC-HHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEE
Confidence 44567899999997 899999888753 5799999999 99999999988766568999999987642 113679999
Q ss_pred EEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+....- ...+...+++.+.+. |+| ||.+++.+.
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~--Lkp-gG~l~i~~~ 370 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKW--LKP-GGKVLISDY 370 (475)
T ss_pred EECCcccccCCHHHHHHHHHHH--cCC-CeEEEEEEe
Confidence 975332 224678899999999 887 777766543
No 108
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.93 E-value=1.6e-08 Score=91.01 Aligned_cols=106 Identities=9% Similarity=-0.031 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...++||||||| +|+.+..|+..- ..+|++||++ +.++..++..-+ +...+|+++.+++.++ |. .+.||+|
T Consensus 121 l~g~~VLDIGCG-~G~~~~~la~~g---~~~V~GiD~S-~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCG-NGYHMWRMLGAG---AKLVVGIDPS-QLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccC-CcHHHHHHHHcC---CCEEEEEcCC-HHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCEE
Confidence 456899999997 999999998752 3579999999 888765444322 3335799999998874 44 6789999
Q ss_pred EEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 117 LIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 117 fiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|.=+.. +..+....++.+.+. |+| ||.++++....
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~--Lkp-GG~lvl~~~~i 229 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQ--LVP-GGELVLETLVI 229 (322)
T ss_pred EECChhhccCCHHHHHHHHHHh--cCC-CcEEEEEEEEe
Confidence 974322 225678899999999 886 88888775543
No 109
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.93 E-value=1.6e-08 Score=89.46 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=84.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~~ 112 (220)
..+|++||.||. |.|.++-.+.+-.+ -.+++.||+| ++.++.||+.+. +. ..+++++.+|+.+++....++
T Consensus 74 h~~pk~VLiiGg-GdG~tlRevlkh~~--ve~i~~VEID-~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 74 HPNPKRVLIIGG-GDGGTLREVLKHLP--VERITMVEID-PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCCCeEEEECC-CccHHHHHHHhcCC--cceEEEEEcC-HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 344589999995 48887766665432 5899999999 999999999996 23 378999999999999875668
Q ss_pred ccEEEEcCCCCCc----c-HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDID----G-HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~~----~-y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
||+|++|+.-..+ . -.++++.+.+. |++ +|++|+.
T Consensus 150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~--L~~-~Gi~v~q 189 (282)
T COG0421 150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRA--LKE-DGIFVAQ 189 (282)
T ss_pred CCEEEEcCCCCCCcccccCCHHHHHHHHHh--cCC-CcEEEEe
Confidence 9999999976211 1 27899999999 876 8998887
No 110
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.93 E-value=1.8e-09 Score=92.74 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=85.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHh-c-cc-CCcEEEEEcchhhhhhhcC-CC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSL-G-RY-ANCIEFVKGDAQKLLMGDY-RG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l-~-g~-~~~Ve~v~gda~~~L~~~~-~~ 112 (220)
..+.++|||.+|| .||+++..++. |+ +|++||.| |..++.|+-|- . ++ +..|+++.||+.++++.+. .+
T Consensus 132 ~~~G~rVLDtC~G-LGYtAi~a~~r----GA~~VitvEkd-p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTG-LGYTAIEALER----GAIHVITVEKD-PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccC-ccHHHHHHHHc----CCcEEEEEeeC-CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 4467999999986 99999965543 66 99999999 99999998775 2 44 3358999999999998874 57
Q ss_pred ccEEEEcCCC---CCccH-HHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 113 ADFVLIDCNI---DIDGH-KNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 113 ~D~VfiD~~k---~~~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
||+|+-|.++ ..+.| .++++++.+. |+| ||-++-+ +-.+|
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~Ri--Lkr-gGrlFHY-vG~Pg 249 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRI--LKR-GGRLFHY-VGNPG 249 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHH--cCc-CCcEEEE-eCCCC
Confidence 9999999987 22566 6788999998 886 7766544 44344
No 111
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.92 E-value=4.9e-09 Score=88.00 Aligned_cols=102 Identities=10% Similarity=0.095 Sum_probs=72.2
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
....-.+++|+||| .|..|..||.. ..+++++|.+ +.+++.||+.+++. .+|++++++..+..|. +.||+|
T Consensus 40 p~~ry~~alEvGCs-~G~lT~~LA~r----Cd~LlavDis-~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P~--~~FDLI 110 (201)
T PF05401_consen 40 PRRRYRRALEVGCS-IGVLTERLAPR----CDRLLAVDIS-PRALARARERLAGL-PHVEWIQADVPEFWPE--GRFDLI 110 (201)
T ss_dssp TTSSEEEEEEE--T-TSHHHHHHGGG----EEEEEEEES--HHHHHHHHHHTTT--SSEEEEES-TTT---S--S-EEEE
T ss_pred CccccceeEecCCC-ccHHHHHHHHh----hCceEEEeCC-HHHHHHHHHhcCCC-CCeEEEECcCCCCCCC--CCeeEE
Confidence 34445889999996 99999999864 6899999999 99999999999876 5899999999887764 799999
Q ss_pred EEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++-.--.+ .+...+++.+... |.| ||.+|+=
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~--L~p-gG~LV~g 145 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAA--LAP-GGHLVFG 145 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHH--hCC-CCEEEEE
Confidence 97643211 2334567777787 887 6666653
No 112
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.92 E-value=2.8e-08 Score=82.83 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=83.4
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
+....++.+|||+||| .|..+..++...+. .++++++|++ +..++.+++++. ...+++++++|+.+.. ...++||
T Consensus 34 ~~~~~~~~~vldiG~G-~G~~~~~~~~~~~~-~~~~~~iD~~-~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-~~~~~~D 108 (223)
T TIGR01934 34 LIGVFKGQKVLDVACG-TGDLAIELAKSAPD-RGKVTGVDFS-SEMLEVAKKKSE-LPLNIEFIQADAEALP-FEDNSFD 108 (223)
T ss_pred HhccCCCCeEEEeCCC-CChhHHHHHHhcCC-CceEEEEECC-HHHHHHHHHHhc-cCCCceEEecchhcCC-CCCCcEE
Confidence 3344578899999997 89999999988753 4799999999 999999999876 3367999999998853 2246899
Q ss_pred EEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 115 FVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 115 ~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+|+..... ...+....++.+.+. |+| ||.++.-+
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~--L~~-gG~l~~~~ 143 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRV--LKP-GGRLVILE 143 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHH--cCC-CcEEEEEE
Confidence 99875422 115667889999998 876 77666543
No 113
>PRK06922 hypothetical protein; Provisional
Probab=98.90 E-value=2.5e-08 Score=96.65 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=86.2
Q ss_pred HHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh-c
Q 042616 31 FISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG-D 109 (220)
Q Consensus 31 ~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~-~ 109 (220)
+...+....+..+|||+||| +|..+..|+...+ +++++++|.+ +.+++.|+++......+++++++|+.+ ++. .
T Consensus 409 ~k~~i~d~~~g~rVLDIGCG-TG~ls~~LA~~~P--~~kVtGIDIS-~~MLe~Ararl~~~g~~ie~I~gDa~d-Lp~~f 483 (677)
T PRK06922 409 DKRIILDYIKGDTIVDVGAG-GGVMLDMIEEETE--DKRIYGIDIS-ENVIDTLKKKKQNEGRSWNVIKGDAIN-LSSSF 483 (677)
T ss_pred HHHHHhhhcCCCEEEEeCCC-CCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHhhhcCCCeEEEEcchHh-Ccccc
Confidence 33445555678999999997 9999988887654 6899999999 999999999876323568999999987 332 1
Q ss_pred -CCCccEEEEcCCC--------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 110 -YRGADFVLIDCNI--------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 110 -~~~~D~VfiD~~k--------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++||+|+....- ...+...+++.+.+. |+|.|-+++.|.++.
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV--LKPGGrLII~D~v~~ 541 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV--LKPGGRIIIRDGIMT 541 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCccC
Confidence 3689999864211 003457888999998 988555566666554
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.90 E-value=2.5e-08 Score=70.99 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=76.3
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|+|+||| .|..+..++. . ...+++++|.+ +...+.+++... ....+++++.+|..+..+....++|+|+.+..
T Consensus 1 ~ildig~G-~G~~~~~~~~--~-~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCG-TGALALALAS--G-PGARVTGVDIS-PVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCC-ccHHHHHHhc--C-CCCEEEEEeCC-HHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 48999997 8998888876 2 36899999999 999999885443 33367999999999876422468999999887
Q ss_pred CC--CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 122 ID--IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 122 k~--~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-. ...+..+++.+.+. +++ ||.+++
T Consensus 76 ~~~~~~~~~~~l~~~~~~--l~~-~g~~~~ 102 (107)
T cd02440 76 LHHLVEDLARFLEEARRL--LKP-GGVLVL 102 (107)
T ss_pred eeehhhHHHHHHHHHHHH--cCC-CCEEEE
Confidence 51 13568888998888 876 776664
No 115
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.90 E-value=2.8e-08 Score=88.14 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=82.4
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
+.+...+...+.++||||||| +|..++.+++..+ +.+++.+|. |..++.|+++++ ++.++|+++.+|+.+.-
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G-~G~~~~~~~~~~p--~~~~~~~D~--~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGG-IGDISAAMLKHFP--ELDSTILNL--PGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCc-hhHHHHHHHHHCC--CCEEEEEec--HHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 444444455677899999986 9999999998865 579999996 688999999987 77789999999987521
Q ss_pred hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 108 GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+++|+|++-.-... .....+++.+.+. |+|.|-+++.|-+.
T Consensus 213 --~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~--L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 213 --YPEADAVLFCRILYSANEQLSTIMCKKAFDA--MRSGGRLLILDMVI 257 (306)
T ss_pred --CCCCCEEEeEhhhhcCChHHHHHHHHHHHHh--cCCCCEEEEEEecc
Confidence 234799876552200 2335689999998 88744444555333
No 116
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.88 E-value=3.5e-08 Score=90.76 Aligned_cols=101 Identities=9% Similarity=-0.028 Sum_probs=80.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||||||| +|..++.++... +.+|++||.+ +++++.|+++.+++ .+++..+|..+. .++||.|
T Consensus 164 ~l~~g~rVLDIGcG-~G~~a~~la~~~---g~~V~giDlS-~~~l~~A~~~~~~l--~v~~~~~D~~~l----~~~fD~I 232 (383)
T PRK11705 164 QLKPGMRVLDIGCG-WGGLARYAAEHY---GVSVVGVTIS-AEQQKLAQERCAGL--PVEIRLQDYRDL----NGQFDRI 232 (383)
T ss_pred CCCCCCEEEEeCCC-ccHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHHhccC--eEEEEECchhhc----CCCCCEE
Confidence 44567899999997 999999888752 5799999999 99999999988754 488999998763 3689999
Q ss_pred EEcC-----CCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDC-----NIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~-----~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.-. .. .++..+++.+.+. |+| ||.++...+.
T Consensus 233 vs~~~~ehvg~--~~~~~~l~~i~r~--Lkp-GG~lvl~~i~ 269 (383)
T PRK11705 233 VSVGMFEHVGP--KNYRTYFEVVRRC--LKP-DGLFLLHTIG 269 (383)
T ss_pred EEeCchhhCCh--HHHHHHHHHHHHH--cCC-CcEEEEEEcc
Confidence 7432 22 4678899999999 886 8888776543
No 117
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.88 E-value=3.5e-08 Score=90.77 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=83.3
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~ 107 (220)
.|+..+ .......+|||||| +|..++.||...+ +..+++||++ +.+++.|.+.+. ++ ++|.++++|+.+++.
T Consensus 113 ~~~~~~-~~~~~p~vLEIGcG-sG~~ll~lA~~~P--~~~~iGIEI~-~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~ 186 (390)
T PRK14121 113 NFLDFI-SKNQEKILIEIGFG-SGRHLLYQAKNNP--NKLFIGIEIH-TPSIEQVLKQIELLNL-KNLLIINYDARLLLE 186 (390)
T ss_pred HHHHHh-cCCCCCeEEEEcCc-ccHHHHHHHHhCC--CCCEEEEECC-HHHHHHHHHHHHHcCC-CcEEEEECCHHHhhh
Confidence 444444 34455689999997 9999999998764 5899999999 999999988886 66 579999999988653
Q ss_pred hc-CCCccEEEEcCCCC--Cc-----cHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 108 GD-YRGADFVLIDCNID--ID-----GHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~--~~-----~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+ .+.+|.|++-.+-+ .. .....++.+.+. |+| ||.+..
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~Rv--Lkp-GG~l~l 233 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRV--LKP-GGTLEL 233 (390)
T ss_pred hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHH--cCC-CcEEEE
Confidence 33 36899999854320 01 236789999998 887 665433
No 118
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.88 E-value=4.8e-08 Score=82.12 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 25 EPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 25 ~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.+...+++...+.. .++.+|||+||| +|+.+..++.. +.+++++|.+ +..++.+++++. +. .++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G-~G~~~~~l~~~----~~~v~~iD~s-~~~~~~a~~~~~~~~~-~~~~~~ 98 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCG-GGLLSEPLARL----GANVTGIDAS-EENIEVAKLHAKKDPL-LKIEYR 98 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCC-CCHHHHHHHhc----CCeEEEEeCC-HHHHHHHHHHHHHcCC-CceEEE
Confidence 44456777766664 347899999996 89999888763 4679999999 999999999886 33 369999
Q ss_pred EcchhhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+.+......++||+|+....- ...+....++.+.+. |++ ||++++.
T Consensus 99 ~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~--L~~-gG~l~i~ 148 (224)
T TIGR01983 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQL--LKP-GGILFFS 148 (224)
T ss_pred eCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 999988764323689999986422 114667888999998 876 7766654
No 119
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.88 E-value=3.3e-08 Score=89.74 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQ 103 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~ 103 (220)
+...-++..+ ......+|||+||| +|..++.++...+ ..+|+++|.+ +.+++.|+++++ ++ ..+++.+|..
T Consensus 183 ~gt~lLl~~l-~~~~~g~VLDlGCG-~G~ls~~la~~~p--~~~v~~vDis-~~Al~~A~~nl~~n~l--~~~~~~~D~~ 255 (342)
T PRK09489 183 VGSQLLLSTL-TPHTKGKVLDVGCG-AGVLSAVLARHSP--KIRLTLSDVS-AAALESSRATLAANGL--EGEVFASNVF 255 (342)
T ss_pred HHHHHHHHhc-cccCCCeEEEeccC-cCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHHHHcCC--CCEEEEcccc
Confidence 3334444444 33445689999997 9999999997643 4799999999 999999999997 44 3577888876
Q ss_pred hhhhhcCCCccEEEEcCCCCC------ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 104 KLLMGDYRGADFVLIDCNIDI------DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.+ .++||+|+.+.+-.. ....+.++.+.+. |+|.|-++++-|-+.
T Consensus 256 ~~~---~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~--LkpgG~L~iVan~~l 307 (342)
T PRK09489 256 SDI---KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRH--LNSGGELRIVANAFL 307 (342)
T ss_pred ccc---CCCccEEEECCCccCCccccHHHHHHHHHHHHHh--cCcCCEEEEEEeCCC
Confidence 533 468999999875411 2346778888998 988666666666653
No 120
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.85 E-value=3.7e-08 Score=92.82 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=94.7
Q ss_pred CCCCCChhHHHHHHHHH--hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 20 GKRGKEPDVGEFISALA--AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La--~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
+...+....+++...++ ...+..+|||+|++ .|-=|..||..+.. .|.|+++|++ +.+++..++|++ |+ .+|
T Consensus 91 G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAA-PGgKTt~la~~l~~-~g~lvA~D~~-~~R~~~L~~nl~r~G~-~nv 166 (470)
T PRK11933 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAA-PGSKTTQIAALMNN-QGAIVANEYS-ASRVKVLHANISRCGV-SNV 166 (470)
T ss_pred CcEEEECHHHHHHHHHhccCCCCCCEEEEeCCC-ccHHHHHHHHHcCC-CCEEEEEeCC-HHHHHHHHHHHHHcCC-CeE
Confidence 33344445556655555 55778999999985 89999999988875 6899999999 999999999998 76 579
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCCCC-----cc------------------HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNIDI-----DG------------------HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k~~-----~~------------------y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+.+.|+..+.+.....||.|++|++-.. .+ -.++++.+.+. |+| ||+||.--.
T Consensus 167 ~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~--Lkp-GG~LVYSTC 243 (470)
T PRK11933 167 ALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHA--LKP-GGTLVYSTC 243 (470)
T ss_pred EEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHH--cCC-CcEEEEECC
Confidence 99999998754333467999999998511 00 04556666676 876 998866544
Q ss_pred C
Q 042616 153 L 153 (220)
Q Consensus 153 ~ 153 (220)
.
T Consensus 244 T 244 (470)
T PRK11933 244 T 244 (470)
T ss_pred C
Confidence 3
No 121
>PTZ00146 fibrillarin; Provisional
Probab=98.85 E-value=3.1e-08 Score=87.93 Aligned_cols=102 Identities=10% Similarity=-0.052 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.+..+|||+||| +|++|..||..+.+ .|+|++||.+ +.+.+...+..+.. .+|.++.+|+..- .+...+.+|+|
T Consensus 131 kpG~~VLDLGaG-~G~~t~~lAdiVG~-~G~VyAVD~s-~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 131 KPGSKVLYLGAA-SGTTVSHVSDLVGP-EGVVYAVEFS-HRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCCCEEEEeCCc-CCHHHHHHHHHhCC-CCEEEEEECc-HHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEE
Confidence 456799999996 99999999998865 6899999999 87554444433322 5789999998642 22224679999
Q ss_pred EEcCCCCCccHH-HHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHK-NVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~-~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+|... .+.. .++..+... |+| ||.+++
T Consensus 207 ~~Dva~--pdq~~il~~na~r~--LKp-GG~~vI 235 (293)
T PTZ00146 207 FADVAQ--PDQARIVALNAQYF--LKN-GGHFII 235 (293)
T ss_pred EEeCCC--cchHHHHHHHHHHh--ccC-CCEEEE
Confidence 999975 4443 445567777 887 666665
No 122
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.85 E-value=6e-08 Score=89.27 Aligned_cols=98 Identities=19% Similarity=0.106 Sum_probs=79.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
..+|||++|| +|..++.+|...+ ..+|+++|.+ +..++.+++|++ ++ ++++++++|+.+++.. ...||+|++
T Consensus 58 ~~~vLDl~aG-sG~~~l~~a~~~~--~~~V~a~Din-~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~-~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSA-SGIRGIRYALETG--VEKVTLNDIN-PDAVELIKKNLELNGL-ENEKVFNKDANALLHE-ERKFDVVDI 131 (382)
T ss_pred CCEEEECCCc-ccHHHHHHHHHCC--CCEEEEEeCC-HHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhh-cCCCCEEEE
Confidence 3589999996 9999999987643 3589999999 999999999997 55 5688999999998864 467999999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+. +.-.++++.+... +++ ||+|.+-
T Consensus 132 DP~---Gs~~~~l~~al~~--~~~-~gilyvS 157 (382)
T PRK04338 132 DPF---GSPAPFLDSAIRS--VKR-GGLLCVT 157 (382)
T ss_pred CCC---CCcHHHHHHHHHH--hcC-CCEEEEE
Confidence 985 3456788886666 655 7776654
No 123
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.85 E-value=5.5e-08 Score=81.95 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+..+|||+||| +|..+..|+.. +.+|+++|.+ +.+++.|++++. +..++++++.+|... ..++||+|
T Consensus 62 ~~~~~vLDvGcG-~G~~~~~l~~~----~~~v~~~D~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCG-VGSLSIPLARR----GAKVVASDIS-PQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCC-CCHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEE
Confidence 567899999997 99999998864 5679999999 999999999986 454689999999432 24689999
Q ss_pred EEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+....- ........++.+.+. + + |++++.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~--~-~-~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASL--T-R-GSLIFT 163 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhh--c-C-CeEEEE
Confidence 865322 113445667777765 3 3 555554
No 124
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.85 E-value=6.8e-08 Score=85.98 Aligned_cols=106 Identities=21% Similarity=0.157 Sum_probs=82.9
Q ss_pred CCCC-CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEE
Q 042616 20 GKRG-KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIE 96 (220)
Q Consensus 20 ~~~~-~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve 96 (220)
+|.+ +.+...+.+...+...+...||||||| +|..|..|+.. +.+|++||.| +.+++.+++++. +..++++
T Consensus 15 GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G-~G~LT~~Ll~~----~~~V~avEiD-~~li~~l~~~~~~~~~~~~v~ 88 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAAIKPTDTVLEIGPG-TGNLTEKLLQL----AKKVIAIEID-PRMVAELKKRFQNSPLASKLE 88 (294)
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEecCc-hHHHHHHHHHh----CCcEEEEECC-HHHHHHHHHHHHhcCCCCcEE
Confidence 5554 678888888887777888999999997 99999998874 5689999999 999999999986 4457899
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHH
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~ 135 (220)
++++|+.+.- ...||.|+.+.+- +-.-+-.++.+.
T Consensus 89 ii~~Dal~~~---~~~~d~VvaNlPY-~Istpil~~ll~ 123 (294)
T PTZ00338 89 VIEGDALKTE---FPYFDVCVANVPY-QISSPLVFKLLA 123 (294)
T ss_pred EEECCHhhhc---ccccCEEEecCCc-ccCcHHHHHHHh
Confidence 9999998742 3578999977765 112244455553
No 125
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.2e-08 Score=90.98 Aligned_cols=119 Identities=17% Similarity=0.191 Sum_probs=94.5
Q ss_pred CChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
..+.+++-|...|.. .+.+++||+.|| +|.+|++||.. ..+|+++|.+ ++.++.|++|++ +. +|++|
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCG-vG~f~l~lA~~----~~~V~gvEi~-~~aV~~A~~NA~~n~i-~N~~f 345 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCG-VGTFGLPLAKR----VKKVHGVEIS-PEAVEAAQENAAANGI-DNVEF 345 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccC-CChhhhhhccc----CCEEEEEecC-HHHHHHHHHHHHHcCC-CcEEE
Confidence 456666666665543 456799999997 99999999952 6899999999 999999999998 66 55999
Q ss_pred EEcchhhhhhhcC--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDY--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..++++++++... ..+|.||+|.++ .+.-.+.++.+.+. .|+.=+.|.=|.-
T Consensus 346 ~~~~ae~~~~~~~~~~~~d~VvvDPPR-~G~~~~~lk~l~~~---~p~~IvYVSCNP~ 399 (432)
T COG2265 346 IAGDAEEFTPAWWEGYKPDVVVVDPPR-AGADREVLKQLAKL---KPKRIVYVSCNPA 399 (432)
T ss_pred EeCCHHHHhhhccccCCCCEEEECCCC-CCCCHHHHHHHHhc---CCCcEEEEeCCHH
Confidence 9999999998753 578999999998 34556889999886 3656666665543
No 126
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.83 E-value=2.7e-08 Score=86.30 Aligned_cols=107 Identities=12% Similarity=0.155 Sum_probs=81.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhcCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~~~ 111 (220)
...++++||-||.| .|.++-.+.+. + +..+|+.||.| +..++.|++++. ++ ..+++++.+|+..+|.+..+
T Consensus 73 ~~~~p~~VLiiGgG-~G~~~~ell~~-~-~~~~i~~VEiD-~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~ 148 (246)
T PF01564_consen 73 LHPNPKRVLIIGGG-DGGTARELLKH-P-PVESITVVEID-PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE 148 (246)
T ss_dssp HSSST-EEEEEEST-TSHHHHHHTTS-T-T-SEEEEEES--HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS
T ss_pred cCCCcCceEEEcCC-Chhhhhhhhhc-C-CcceEEEEecC-hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC
Confidence 34469999999954 77776666542 2 24799999999 999999999986 21 46899999999999987666
Q ss_pred -CccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 -GADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 -~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.||+|++|...+. ..| .+.++.+++. |+| ||+++..
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~--L~~-~Gv~v~~ 190 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRR--LKP-DGVLVLQ 190 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHH--EEE-EEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhh--cCC-CcEEEEE
Confidence 8999999987611 122 6889999999 876 9998875
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.81 E-value=3.2e-08 Score=86.55 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+..+|||+||| +|+.+..|+...+..+ ..++++|++ +.+++.|++.. .+++++++|+.+ +|...++||+|+.
T Consensus 85 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~~~~v~giD~s-~~~l~~A~~~~----~~~~~~~~d~~~-lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCG-EGYYTHALADALPEITTMQLFGLDIS-KVAIKYAAKRY----PQVTFCVASSHR-LPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCc-CCHHHHHHHHhcccccCCeEEEECCC-HHHHHHHHHhC----CCCeEEEeeccc-CCCcCCceeEEEE
Confidence 45789999997 9999999998776532 489999999 99999998764 468899999876 3433568999985
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
--.. .. ++.+.+. |+| ||.++.
T Consensus 158 ~~~~--~~----~~e~~rv--Lkp-gG~li~ 179 (272)
T PRK11088 158 IYAP--CK----AEELARV--VKP-GGIVIT 179 (272)
T ss_pred ecCC--CC----HHHHHhh--ccC-CCEEEE
Confidence 4333 33 3556666 776 666655
No 128
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=7.4e-08 Score=85.10 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=93.2
Q ss_pred CCChhHH---HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 23 GKEPDVG---EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~---~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.+++.+. +++...+...+.+++|||||| -|..++++|+- .+.+|+++..+ ++..+.+++.++ |++++|++
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCG-WG~l~~~aA~~---y~v~V~GvTlS-~~Q~~~~~~r~~~~gl~~~v~v 126 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCG-WGGLAIYAAEE---YGVTVVGVTLS-EEQLAYAEKRIAARGLEDNVEV 126 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCC-hhHHHHHHHHH---cCCEEEEeeCC-HHHHHHHHHHHHHcCCCcccEE
Confidence 3444443 344444556779999999997 89999988875 37899999999 999999999886 88889999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+..|-.++- ++||-|+-=+-- ..++|.++|+.+... |+| ||.++.+.+..
T Consensus 127 ~l~d~rd~~----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~--L~~-~G~~llh~I~~ 179 (283)
T COG2230 127 RLQDYRDFE----EPFDRIVSVGMFEHVGKENYDDFFKKVYAL--LKP-GGRMLLHSITG 179 (283)
T ss_pred Eeccccccc----cccceeeehhhHHHhCcccHHHHHHHHHhh--cCC-CceEEEEEecC
Confidence 999987753 459999732211 126799999999998 865 99998887775
No 129
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.80 E-value=3.4e-08 Score=85.11 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=92.9
Q ss_pred CCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 23 GKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.+.|---.+++.-+.. ....+|||+||| -|..+.+||+. |..|++||.+ ++.++.|+.+.. ++ .|++
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCG-gG~Lse~mAr~----Ga~VtgiD~s-e~~I~~Ak~ha~e~gv--~i~y 110 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCG-GGILSEPLARL----GASVTGIDAS-EKPIEVAKLHALESGV--NIDY 110 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCC-ccHhhHHHHHC----CCeeEEecCC-hHHHHHHHHhhhhccc--cccc
Confidence 4556566677776665 577999999997 79999999974 7899999999 999999999886 54 4889
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.+++++... .++||+|+.=-=. +-.+...+++.+.++ ++| ||+++.-.+.
T Consensus 111 ~~~~~edl~~~-~~~FDvV~cmEVlEHv~dp~~~~~~c~~l--vkP-~G~lf~STin 163 (243)
T COG2227 111 RQATVEDLASA-GGQFDVVTCMEVLEHVPDPESFLRACAKL--VKP-GGILFLSTIN 163 (243)
T ss_pred hhhhHHHHHhc-CCCccEEEEhhHHHccCCHHHHHHHHHHH--cCC-CcEEEEeccc
Confidence 99999997743 4799999832111 225667789999998 887 8888776565
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.78 E-value=7.5e-08 Score=87.33 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..+||||||| +|..++.++...+ +.+++++|.+ +++++.|+++... .+++++.+|+.+ ++...+.||+|+..
T Consensus 113 ~~~~VLDLGcG-tG~~~l~La~~~~--~~~VtgVD~S-~~mL~~A~~k~~~--~~i~~i~gD~e~-lp~~~~sFDvVIs~ 185 (340)
T PLN02490 113 RNLKVVDVGGG-TGFTTLGIVKHVD--AKNVTILDQS-PHQLAKAKQKEPL--KECKIIEGDAED-LPFPTDYADRYVSA 185 (340)
T ss_pred CCCEEEEEecC-CcHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHhhhc--cCCeEEeccHHh-CCCCCCceeEEEEc
Confidence 45799999997 9999999888653 4799999999 9999999987642 468999999987 33324689999986
Q ss_pred CCCC-CccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 120 CNID-IDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 120 ~~k~-~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.... -.+....++.+.+. |+| ||.++.
T Consensus 186 ~~L~~~~d~~~~L~e~~rv--LkP-GG~LvI 213 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRV--LKI-GGKACL 213 (340)
T ss_pred ChhhhCCCHHHHHHHHHHh--cCC-CcEEEE
Confidence 5331 13556789999999 887 666543
No 131
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.3e-08 Score=86.64 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=69.4
Q ss_pred CChhHHHHHHHHH--hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 24 KEPDVGEFISALA--AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 24 ~~p~~~~~L~~La--~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
-.|++-.++..+. ....+.+|||+||| +|..++.||...+ ..+|+++|.+ +.+++.|++|+. ++ .++.++.
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTG-SG~iai~la~~~~--~~~V~a~Dis-~~Al~~A~~Na~~~~l-~~~~~~~ 166 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTG-SGAIAIALAKEGP--DAEVIAVDIS-PDALALARENAERNGL-VRVLVVQ 166 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCC-hHHHHHHHHhhCc--CCeEEEEECC-HHHHHHHHHHHHHcCC-ccEEEEe
Confidence 4466666766632 22223379999997 9999999998866 3899999999 999999999998 66 6778888
Q ss_pred cchhhhhhhcCCCccEEEEcCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|..+-+ .++||+|+..++
T Consensus 167 ~dlf~~~---~~~fDlIVsNPP 185 (280)
T COG2890 167 SDLFEPL---RGKFDLIVSNPP 185 (280)
T ss_pred eeccccc---CCceeEEEeCCC
Confidence 8766655 348999986654
No 132
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.77 E-value=1.3e-07 Score=86.93 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=81.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
-+|||+.|| +|..++.++.-.+. ..+|+++|.+ ++.++.+++|++ +. ++++++++|+..++......||+|++|
T Consensus 46 ~~vLD~faG-sG~rgir~a~e~~g-a~~Vv~nD~n-~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSA-SGIRAIRYAHEIEG-VREVFANDIN-PKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCc-hhHHHHHHHhhCCC-CCEEEEEeCC-HHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 489999986 99999988864321 3689999999 999999999998 44 479999999999987655679999999
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+ - +...++++.+.+. ++ +||+|.+-
T Consensus 122 P-f--Gs~~~fld~al~~--~~-~~glL~vT 146 (374)
T TIGR00308 122 P-F--GTPAPFVDSAIQA--SA-ERGLLLVT 146 (374)
T ss_pred C-C--CCcHHHHHHHHHh--cc-cCCEEEEE
Confidence 9 4 5667889999887 75 48776665
No 133
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.77 E-value=8.2e-08 Score=81.64 Aligned_cols=99 Identities=14% Similarity=0.020 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c------------cCCcEEEEEcchhhhh
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R------------YANCIEFVKGDAQKLL 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g------------~~~~Ve~v~gda~~~L 106 (220)
+..+||++||| .|..++|||.. |-.|++||.+ +.+++.+.+... . -..+|+++++|..+.-
T Consensus 34 ~~~rvLd~GCG-~G~da~~LA~~----G~~V~gvD~S-~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCG-KSLDLAWLAEQ----GHRVLGVELS-EIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCC-chhHHHHHHhC----CCeEEEEeCC-HHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 55799999997 99999999963 7789999999 999987643211 0 1246999999998854
Q ss_pred hhcCCCccEEEEcCC---CCCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 107 MGDYRGADFVLIDCN---IDIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~---k~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
+...+.||+|+--+- -....-..+++.+.+. |+| ||++
T Consensus 108 ~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~l--Lkp-gG~~ 148 (213)
T TIGR03840 108 AADLGPVDAVYDRAALIALPEEMRQRYAAHLLAL--LPP-GARQ 148 (213)
T ss_pred cccCCCcCEEEechhhccCCHHHHHHHHHHHHHH--cCC-CCeE
Confidence 333356888862111 1114457789999999 887 7753
No 134
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7.2e-08 Score=80.43 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=86.0
Q ss_pred CCCCChhHHHHHHHHHhh---CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 21 KRGKEPDVGEFISALAAG---NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~---~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
|...++..+..+-..|.. ...+.|+|+||| +|..++..+..- ..+|+|||+| +++++.+++|.+.+..+|+|
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~G-TG~La~ga~~lG---a~~V~~vdiD-~~a~ei~r~N~~~l~g~v~f 97 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAG-TGILAIGAALLG---ASRVLAVDID-PEALEIARANAEELLGDVEF 97 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCC-cCHHHHHHHhcC---CcEEEEEecC-HHHHHHHHHHHHhhCCceEE
Confidence 445666676666666654 346789999997 999988766432 3699999999 99999999999855578999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+++|+.++ ..++|.++++++-.. +.-...++.+.+. . ..+.-.+|.-.
T Consensus 98 ~~~dv~~~----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~----s-~vVYsiH~a~~ 148 (198)
T COG2263 98 VVADVSDF----RGKFDTVIMNPPFGSQRRHADRPFLLKALEI----S-DVVYSIHKAGS 148 (198)
T ss_pred EEcchhhc----CCccceEEECCCCccccccCCHHHHHHHHHh----h-heEEEeecccc
Confidence 99999885 367999999987611 1224456666664 2 45555555543
No 135
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.77 E-value=1.2e-07 Score=84.26 Aligned_cols=120 Identities=17% Similarity=0.084 Sum_probs=84.0
Q ss_pred CChhHHHHHHHHHhh-----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc-CCcEE
Q 042616 24 KEPDVGEFISALAAG-----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY-ANCIE 96 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~-~~~Ve 96 (220)
......++|...++. .++..|||+||| +|..|..|+.++++ +.++++||.+ +++++.|++.+. .. .-+|+
T Consensus 42 ~tr~E~~il~~~~~~ia~~~~~~~~iLELGcG-tG~~t~~Ll~~l~~-~~~~~~iDiS-~~mL~~a~~~l~~~~p~~~v~ 118 (301)
T TIGR03438 42 PTRTEAAILERHADEIAAATGAGCELVELGSG-SSRKTRLLLDALRQ-PARYVPIDIS-ADALKESAAALAADYPQLEVH 118 (301)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCCeEEecCCC-cchhHHHHHHhhcc-CCeEEEEECC-HHHHHHHHHHHHhhCCCceEE
Confidence 344455555554442 245889999997 99999999998865 6899999999 999999999886 32 24588
Q ss_pred EEEcchhhhhhhcCC----CccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 97 FVKGDAQKLLMGDYR----GADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 97 ~v~gda~~~L~~~~~----~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++||..+.++.... ..+++|.+..- +..+-...++.+... |+| ||.+++
T Consensus 119 ~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~--L~p-gG~~li 175 (301)
T TIGR03438 119 GICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQL--LGP-GGGLLI 175 (301)
T ss_pred EEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHh--cCC-CCEEEE
Confidence 899998775432111 34466666543 113345678888888 887 666554
No 136
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.77 E-value=1.2e-07 Score=80.04 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=72.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.++|||+||| +|..+..|+.. +.+|+++|.+ +++++.|++++. +..+++++.++|+.+. + ++||+
T Consensus 53 ~~~~~~vLDiGcG-~G~~~~~la~~----~~~v~gvD~s-~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ 122 (219)
T TIGR02021 53 PLKGKRVLDAGCG-TGLLSIELAKR----GAIVKAVDIS-EQMVQMARNRAQGRDVAGNVEFEVNDLLSL-C---GEFDI 122 (219)
T ss_pred CCCCCEEEEEeCC-CCHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHHHhcCCCCceEEEECChhhC-C---CCcCE
Confidence 3468999999997 99999998863 5699999999 999999999886 4446899999998774 2 68999
Q ss_pred EEE-cCCC--CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLI-DCNI--DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 Vfi-D~~k--~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+. +.-. ...+....++.+.+. ++ +++++.+
T Consensus 123 ii~~~~l~~~~~~~~~~~l~~i~~~--~~-~~~~i~~ 156 (219)
T TIGR02021 123 VVCMDVLIHYPASDMAKALGHLASL--TK-ERVIFTF 156 (219)
T ss_pred EEEhhHHHhCCHHHHHHHHHHHHHH--hC-CCEEEEE
Confidence 975 2211 002345567777765 43 3555554
No 137
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.76 E-value=3.6e-08 Score=83.26 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=71.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.+.|+|..|| +|++++.+|.-.+ +.+|+|+|.+ |..++..++|++ ++.++|+.+++|+.++++ ...+|-
T Consensus 99 v~~~e~VlD~faG-IG~f~l~~ak~~~--~~~V~A~d~N-p~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAG-IGPFSLPIAKHGK--AKRVYAVDLN-PDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-T-TTTTHHHHHHHT---SSEEEEEES--HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEE
T ss_pred CCcceEEEEccCC-ccHHHHHHhhhcC--ccEEEEecCC-HHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCE
Confidence 4567899999986 9999999987432 6789999999 999999999998 788889999999999886 578999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
|+++-+. .. .++++.+... ++ +||++-
T Consensus 173 vim~lp~--~~-~~fl~~~~~~--~~-~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPE--SS-LEFLDAALSL--LK-EGGIIH 199 (200)
T ss_dssp EEE--TS--SG-GGGHHHHHHH--EE-EEEEEE
T ss_pred EEECChH--HH-HHHHHHHHHH--hc-CCcEEE
Confidence 9999987 33 3577777776 54 477763
No 138
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=6.6e-08 Score=86.06 Aligned_cols=112 Identities=9% Similarity=-0.015 Sum_probs=82.0
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
.++|..+.. ++++|||+||| +|..+++.++-. ..+|+++|.| |.+++.|+.|+. ++...++.-..+..+..
T Consensus 153 L~~Le~~~~--~g~~vlDvGcG-SGILaIAa~kLG---A~~v~g~DiD-p~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCG-SGILAIAAAKLG---AKKVVGVDID-PQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCC-hhHHHHHHHHcC---CceEEEecCC-HHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 455555554 78999999997 899988777631 3679999999 999999999997 55433445555555544
Q ss_pred hhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 107 MGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. .++||+|+-.--- +-.......+.+. ++| ||.++.-.++-
T Consensus 226 ~--~~~~DvIVANILA--~vl~~La~~~~~~--lkp-gg~lIlSGIl~ 266 (300)
T COG2264 226 E--NGPFDVIVANILA--EVLVELAPDIKRL--LKP-GGRLILSGILE 266 (300)
T ss_pred c--cCcccEEEehhhH--HHHHHHHHHHHHH--cCC-CceEEEEeehH
Confidence 2 2699999965533 4456677777888 876 89888877774
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.74 E-value=2.2e-07 Score=80.31 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=86.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcC-CCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAAR-QTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~-~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
++.+.++..++++.. ......+|||+||| +|..++.++..+. +...+|++||+| +.+++.|++++ .++.++
T Consensus 31 GqFfTP~~iAr~~~i--~~~~~grVLDlG~G-SG~Lalala~~~~~~~~~~V~aVEID-~~Al~~Ar~n~----~~~~~~ 102 (241)
T PHA03412 31 GAFFTPIGLARDFTI--DACTSGSVVDLCAG-IGGLSFAMVHMMMYAKPREIVCVELN-HTYYKLGKRIV----PEATWI 102 (241)
T ss_pred CccCCCHHHHHHHHH--hccCCCEEEEccCh-HHHHHHHHHHhcccCCCcEEEEEECC-HHHHHHHHhhc----cCCEEE
Confidence 455666777777632 23346799999997 9999999887643 125799999999 99999999886 358899
Q ss_pred EcchhhhhhhcCCCccEEEEcCCCCC-------c------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 99 KGDAQKLLMGDYRGADFVLIDCNIDI-------D------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D~VfiD~~k~~-------~------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++|+.... ....||+|+.+.+-.. . .+..+++.+.++ + ++|++|+=.+++
T Consensus 103 ~~D~~~~~--~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L--l-~~G~~ILP~~~~ 165 (241)
T PHA03412 103 NADALTTE--FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI--A-RQGTFIIPQMSA 165 (241)
T ss_pred Ecchhccc--ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH--c-CCCEEEeCcccc
Confidence 99987643 2468999997765410 1 124466666765 5 458887766665
No 140
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.73 E-value=9.8e-08 Score=80.79 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=70.2
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hh----hc-C
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LM----GD-Y 110 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~----~~-~ 110 (220)
..+..+||||||| +|..|..+++.... .++|++||++ +. ... .+|+++++|+.+. ++ .+ .
T Consensus 49 ~~~~~~VLDlG~G-tG~~t~~l~~~~~~-~~~V~aVDi~-~~---------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAA-PGGWSQYAVTQIGD-KGRVIACDIL-PM---------DPI-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEccc-CCHHHHHHHHHcCC-CceEEEEecc-cc---------cCC-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 3567899999996 99999999987654 6899999999 61 122 3589999998763 22 12 4
Q ss_pred CCccEEEEcCCCCC-c----c-------HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDI-D----G-------HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~-~----~-------y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++||+|+.|..... + + ...+++.+.+. |+| ||.+++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~--Lkp-GG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDV--LAP-GGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHH--cCC-CCEEEEE
Confidence 68999999873200 0 1 14578888888 886 7877775
No 141
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=1.3e-07 Score=85.64 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 25 EPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 25 ~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
+....|-...+-.....+.|||.-+| +|++|+.+|...+. +|+++|.| |..++..++|++ ++.+.|+.++||+
T Consensus 173 prl~~ER~Rva~~v~~GE~V~DmFAG-VGpfsi~~Ak~g~~---~V~A~diN-P~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 173 PRLSTERARVAELVKEGETVLDMFAG-VGPFSIPIAKKGRP---KVYAIDIN-PDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred CCchHHHHHHHhhhcCCCEEEEccCC-cccchhhhhhcCCc---eEEEEecC-HHHHHHHHHHHHhcCccceeeEEeccH
Confidence 33344444444445558999999997 99999999987554 39999999 999999999998 7777799999999
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++.+.+ +.+|-|++..++ . -.+++..+... +++ ||+|..+....
T Consensus 248 rev~~~~-~~aDrIim~~p~--~-a~~fl~~A~~~--~k~-~g~iHyy~~~~ 292 (341)
T COG2520 248 REVAPEL-GVADRIIMGLPK--S-AHEFLPLALEL--LKD-GGIIHYYEFVP 292 (341)
T ss_pred HHhhhcc-ccCCEEEeCCCC--c-chhhHHHHHHH--hhc-CcEEEEEeccc
Confidence 9998763 789999999988 3 24566777777 665 99999987775
No 142
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.71 E-value=1.3e-07 Score=88.63 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=78.8
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh-hhhcCCCc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL-LMGDYRGA 113 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~-L~~~~~~~ 113 (220)
+....+.++||||||| +|..|..|+.. .++|++||.+ +++++.+++.. +...+++++++|+.+. ++...++|
T Consensus 32 ~l~~~~~~~vLDlGcG-~G~~~~~la~~----~~~v~giD~s-~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 32 LLPPYEGKSVLELGAG-IGRFTGELAKK----AGQVIALDFI-ESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hcCccCCCEEEEeCCC-cCHHHHHHHhh----CCEEEEEeCC-HHHHHHHHHHh-ccCCceEEEEecccccccCCCCCCE
Confidence 3344456799999997 99999999874 5799999999 99998876633 3336799999998642 33224689
Q ss_pred cEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE-ecCC
Q 042616 114 DFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG-YNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~-dNv~ 153 (220)
|+|+....-.. ......++.+.+. |+| ||++++ |+++
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~--Lk~-gG~l~~~d~~~ 145 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKW--LKV-GGYIFFRESCF 145 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHh--cCC-CeEEEEEeccC
Confidence 99998764310 2246788889988 876 776655 4444
No 143
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.71 E-value=1.8e-07 Score=79.87 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH--hcc-----------cCCcEEEEEcchhhhh
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS--LGR-----------YANCIEFVKGDAQKLL 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~--l~g-----------~~~~Ve~v~gda~~~L 106 (220)
+..+||++||| .|..++|||.- |-.|++||++ +.+++.+.+. +.. ...+|++.++|..+..
T Consensus 37 ~~~rvL~~gCG-~G~da~~LA~~----G~~V~avD~s-~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCG-KSLDMLWLAEQ----GHEVLGVELS-ELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCC-ChHhHHHHHhC----CCeEEEEccC-HHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 45799999997 99999999962 7799999999 9999876431 110 1357999999998875
Q ss_pred hhcCCCccEEE-----EcCCCCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 107 MGDYRGADFVL-----IDCNIDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 107 ~~~~~~~D~Vf-----iD~~k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
+.....||+|+ +-.+. ..-.++++.+.+. |+| ||+
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~--~~R~~~~~~l~~l--L~p-gG~ 150 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPE--EMRERYVQQLAAL--LPA-GCR 150 (218)
T ss_pred cccCCCeeEEEehHhHhhCCH--HHHHHHHHHHHHH--cCC-CCe
Confidence 44346789998 32333 4567889999998 887 653
No 144
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.70 E-value=1.7e-07 Score=81.53 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=77.4
Q ss_pred cCCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 19 MGKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 19 ~~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
.+|. .+.+...+.+...+...+.+.||||||| +|..|..|+.. +.+|++||.| +.+++.+++++... +++++
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G-~G~lt~~L~~~----~~~v~~vEid-~~~~~~l~~~~~~~-~~v~i 79 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPG-KGALTDELAKR----AKKVYAIELD-PRLAEFLRDDEIAA-GNVEI 79 (258)
T ss_pred CCccccCCHHHHHHHHHhcCCCCcCeEEEEeCc-cCHHHHHHHHh----CCEEEEEECC-HHHHHHHHHHhccC-CCEEE
Confidence 3555 4788899988888887888999999997 99999999875 4699999999 99999999988653 68999
Q ss_pred EEcchhhhhhhcCCCccEEEEcCCC
Q 042616 98 VKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 98 v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+++|+.++- ...||.|+-..+-
T Consensus 80 i~~D~~~~~---~~~~d~Vv~NlPy 101 (258)
T PRK14896 80 IEGDALKVD---LPEFNKVVSNLPY 101 (258)
T ss_pred EEeccccCC---chhceEEEEcCCc
Confidence 999998742 2458988866554
No 145
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.68 E-value=7.1e-08 Score=85.94 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 25 EPDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 25 ~p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
.|-+.-.|..|... .+.++|||+||| +|..++..++. . .++|+++|.| |..++.|++|++ ++.+++++. .
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~G-SGILaiaA~kl-G--A~~v~a~DiD-p~Av~~a~~N~~~N~~~~~~~v~--~ 217 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCG-SGILAIAAAKL-G--AKKVVAIDID-PLAVEAARENAELNGVEDRIEVS--L 217 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-T-TSHHHHHHHHT-T--BSEEEEEESS-CHHHHHHHHHHHHTT-TTCEEES--C
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCc-HHHHHHHHHHc-C--CCeEEEecCC-HHHHHHHHHHHHHcCCCeeEEEE--E
Confidence 34455555555554 446899999997 89988866653 1 3689999999 999999999997 777777663 2
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
..+.. ..+||+|+-.--. .-.......+.+. |+| ||.++.-.++.
T Consensus 218 ~~~~~---~~~~dlvvANI~~--~vL~~l~~~~~~~--l~~-~G~lIlSGIl~ 262 (295)
T PF06325_consen 218 SEDLV---EGKFDLVVANILA--DVLLELAPDIASL--LKP-GGYLILSGILE 262 (295)
T ss_dssp TSCTC---CS-EEEEEEES-H--HHHHHHHHHCHHH--EEE-EEEEEEEEEEG
T ss_pred ecccc---cccCCEEEECCCH--HHHHHHHHHHHHh--hCC-CCEEEEccccH
Confidence 22322 3789999976665 5566777777777 765 89988876664
No 146
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.68 E-value=1.6e-07 Score=78.85 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=79.2
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
..|...+++.+ +...++.++||+||| .|-.+++||+- |=.|+++|.+ +..++.+++..+ ++ .|+..+.|
T Consensus 15 ~~~~hs~v~~a-~~~~~~g~~LDlgcG-~GRNalyLA~~----G~~VtAvD~s-~~al~~l~~~a~~~~l--~i~~~~~D 85 (192)
T PF03848_consen 15 LTPTHSEVLEA-VPLLKPGKALDLGCG-EGRNALYLASQ----GFDVTAVDIS-PVALEKLQRLAEEEGL--DIRTRVAD 85 (192)
T ss_dssp B----HHHHHH-CTTS-SSEEEEES-T-TSHHHHHHHHT----T-EEEEEESS-HHHHHHHHHHHHHTT---TEEEEE-B
T ss_pred CCCCcHHHHHH-HhhcCCCcEEEcCCC-CcHHHHHHHHC----CCeEEEEECC-HHHHHHHHHHHhhcCc--eeEEEEec
Confidence 34445555554 466788999999997 99999999984 7789999999 999998887765 55 39999999
Q ss_pred hhhhhhhcCCCccEEEEc-----CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLID-----CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD-----~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+.-. ...||+|+.. .++ +..+.+++.++.. ++| ||+.+.-
T Consensus 86 l~~~~~--~~~yD~I~st~v~~fL~~--~~~~~i~~~m~~~--~~p-GG~~li~ 132 (192)
T PF03848_consen 86 LNDFDF--PEEYDFIVSTVVFMFLQR--ELRPQIIENMKAA--TKP-GGYNLIV 132 (192)
T ss_dssp GCCBS---TTTEEEEEEESSGGGS-G--GGHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred chhccc--cCCcCEEEEEEEeccCCH--HHHHHHHHHHHhh--cCC-cEEEEEE
Confidence 876532 4689999753 233 5678899999998 876 9997763
No 147
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.67 E-value=5.3e-08 Score=88.59 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHhhC---CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 23 GKEPDVGEFISALAAGN---NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~---~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.+.+.+.+-|...+..+ .+..+||+.|| +|.+|+.||.. ..+|++||.+ +++++.|++|++ ++ ++++|
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG-~G~fsl~la~~----~~~V~gvE~~-~~av~~A~~Na~~N~i-~n~~f 248 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCG-VGTFSLPLAKK----AKKVIGVEIV-EEAVEDARENAKLNGI-DNVEF 248 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-T-TTCCHHHHHCC----SSEEEEEES--HHHHHHHHHHHHHTT---SEEE
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeec-CCHHHHHHHhh----CCeEEEeeCC-HHHHHHHHHHHHHcCC-CcceE
Confidence 45566666665555422 23479999997 99999999874 5799999999 999999999998 66 78999
Q ss_pred EEcchhhhhhhc---------------CCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 98 VKGDAQKLLMGD---------------YRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 98 v~gda~~~L~~~---------------~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
+.+++.++...+ ...+|.|++|+++ .+.....++.+.+
T Consensus 249 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR-~G~~~~~~~~~~~ 301 (352)
T PF05958_consen 249 IRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR-AGLDEKVIELIKK 301 (352)
T ss_dssp EE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T-T-SCHHHHHHHHH
T ss_pred EEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC-CCchHHHHHHHhc
Confidence 999988764321 1268999999998 3555667777654
No 148
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.67 E-value=3.2e-07 Score=82.39 Aligned_cols=104 Identities=9% Similarity=-0.073 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.++||||||| +|+.+..++... ..+|++||++ +.++..++..-+ +...++.+..++..+. +. ...||+|
T Consensus 120 ~~g~~VLDvGCG-~G~~~~~~~~~g---~~~v~GiDpS-~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-~~~FD~V 192 (314)
T TIGR00452 120 LKGRTILDVGCG-SGYHMWRMLGHG---AKSLVGIDPT-VLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-LYAFDTV 192 (314)
T ss_pred CCCCEEEEeccC-CcHHHHHHHHcC---CCEEEEEcCC-HHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-CCCcCEE
Confidence 556899999997 999988887541 3589999999 888765443222 2235788999988774 33 3589999
Q ss_pred EEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|.-+-- ...+..+.++.+.+. |+| ||.+|....
T Consensus 193 ~s~gvL~H~~dp~~~L~el~r~--Lkp-GG~Lvletl 226 (314)
T TIGR00452 193 FSMGVLYHRKSPLEHLKQLKHQ--LVI-KGELVLETL 226 (314)
T ss_pred EEcchhhccCCHHHHHHHHHHh--cCC-CCEEEEEEE
Confidence 976532 125667899999999 887 777776533
No 149
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.65 E-value=2.7e-07 Score=76.22 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=72.3
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--h-
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--L- 106 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L- 106 (220)
++...+....+.++|||+||| +|..+..++..... .++|+++|++ +.+ .. .+++++++|+.+. +
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~G-tG~~~~~l~~~~~~-~~~v~~vDis-~~~---------~~-~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAA-PGGWSQVAVEQVGG-KGRVIAVDLQ-PMK---------PI-ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred HHHHHhcccCCCCEEEEecCC-CCHHHHHHHHHhCC-CceEEEEecc-ccc---------cC-CCceEEEeeCCChhHHH
Confidence 444555555778999999997 89999888876644 6799999999 754 11 4578888887542 1
Q ss_pred ---hhc-CCCccEEEEcCCCC-----Ccc-------HHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 107 ---MGD-YRGADFVLIDCNID-----IDG-------HKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 107 ---~~~-~~~~D~VfiD~~k~-----~~~-------y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
... .++||+|+.|+..+ ..+ ....++.+.+. |+| ||.+++.
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~--Lkp-gG~lvi~ 145 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEV--LKP-KGNFVVK 145 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH--ccC-CCEEEEE
Confidence 111 35799999986320 011 24678888888 876 7777764
No 150
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.65 E-value=3e-07 Score=80.76 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=72.6
Q ss_pred CCChhHHHHHHHHHhh------CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCc
Q 042616 23 GKEPDVGEFISALAAG------NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANC 94 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~------~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~ 94 (220)
+-.|++-++....... .+...|+|+||| +|..++.|+..+++ +++++||.+ +.++..|.+|.+ ++.++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtG-SGaIslsll~~L~~--~~v~AiD~S-~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTG-SGAISLSLLHGLPQ--CTVTAIDVS-KAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCC-ccHHHHHHHhcCCC--ceEEEEecc-HHHHHHHHHHHHHHhhcCc
Confidence 4557777776655443 334579999997 99999999999884 999999999 999999999998 77889
Q ss_pred EEEE----EcchhhhhhhcCCCccEEEEc
Q 042616 95 IEFV----KGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 95 Ve~v----~gda~~~L~~~~~~~D~VfiD 119 (220)
++++ .+|+.+-.+.+.+++|+++-+
T Consensus 201 i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred eEEEecccccccccccccccCceeEEecC
Confidence 9988 456655444445788888743
No 151
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.65 E-value=1.2e-08 Score=75.32 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=59.7
Q ss_pred EEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchhhhhhhcC-CCccEEEEcCCC
Q 042616 45 VMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQKLLMGDY-RGADFVLIDCNI 122 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k 122 (220)
|||||| +|..+..|+...+ ..+++++|++ +.+++.|++.+... ..+++.+..+..+...... ++||+|+.-.--
T Consensus 1 LdiGcG-~G~~~~~l~~~~~--~~~~~~~D~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCG-TGRLLRALLEELP--DARYTGVDIS-PSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTT-TS-TTTTHHHHC---EEEEEEEESS-SSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCcc-ChHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 799997 9999999998873 6999999999 99999999888732 2345555555444332222 589999866443
Q ss_pred -CCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 123 -DIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 123 -~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
.-.+...+++.+.+. |+| ||++
T Consensus 77 ~~l~~~~~~l~~~~~~--L~p-gG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRL--LKP-GGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT---TS-S-EE
T ss_pred hhhhhHHHHHHHHHHH--cCC-CCCC
Confidence 114667889999988 886 8875
No 152
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.3e-07 Score=78.59 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=82.7
Q ss_pred ChhH-HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc----------
Q 042616 25 EPDV-GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY---------- 91 (220)
Q Consensus 25 ~p~~-~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~---------- 91 (220)
.|.. +..|..|-. ..+.-+.|++|+| +||.|.++|.-+..+++-.+.||.- ++.++.+++|++ ..
T Consensus 65 Ap~mha~~le~L~~~L~pG~s~LdvGsG-SGYLt~~~~~mvg~~g~~~~GIEh~-~eLVe~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQPGASFLDVGSG-SGYLTACFARMVGATGGNVHGIEHI-PELVEYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred chHHHHHHHHHHHHhhccCcceeecCCC-ccHHHHHHHHHhcCCCccccchhhh-HHHHHHHHHHHHhhccCchhhhhhc
Confidence 3444 455555532 5677889999986 9999999997777767777999999 999999999996 21
Q ss_pred CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 92 ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 92 ~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
...+.+++||....-+. ..+||.|++.+.. .....+++++|++
T Consensus 143 ~~~l~ivvGDgr~g~~e-~a~YDaIhvGAaa-~~~pq~l~dqL~~ 185 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYAE-QAPYDAIHVGAAA-SELPQELLDQLKP 185 (237)
T ss_pred cCceEEEeCCccccCCc-cCCcceEEEccCc-cccHHHHHHhhcc
Confidence 24589999999987655 6899999999876 3455666666553
No 153
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.64 E-value=3.6e-07 Score=77.40 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=75.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCC--CCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQ--TGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~--~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.+..|...-.++.|.-..+|+.|+|+|+ .-|-|++++|.-+.. ..++|++||+| ..........-..+.++|++++
T Consensus 14 i~q~P~Dm~~~qeli~~~kPd~IIE~Gi-~~GGSli~~A~ml~~~~~~~~VigiDId-ir~~~~~a~e~hp~~~rI~~i~ 91 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWELKPDLIIETGI-AHGGSLIFWASMLELLGGKGKVIGIDID-IRPHNRKAIESHPMSPRITFIQ 91 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH--SEEEEE---TTSHHHHHHHHHHHHTT---EEEEEES--GTT--S-GGGG----TTEEEEE
T ss_pred hhcCHHHHHHHHHHHHHhCCCeEEEEec-CCCchHHHHHHHHHHhCCCceEEEEeCC-cchhchHHHhhccccCceEEEE
Confidence 4567888888888888999999999998 478888887753321 26899999998 5444322211124568999999
Q ss_pred cchhh--hhhhc-----CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 100 GDAQK--LLMGD-----YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 100 gda~~--~L~~~-----~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||..+ .+... .....+|+.|+++........|+.+.++ +. +|+.+|+-|..
T Consensus 92 Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~pl--v~-~G~Y~IVeDt~ 149 (206)
T PF04989_consen 92 GDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPL--VS-PGSYLIVEDTI 149 (206)
T ss_dssp S-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT-----TT-EEEETSHH
T ss_pred CCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCcc--CC-CCCEEEEEecc
Confidence 99753 23222 2456799999997556668888888887 75 59998877665
No 154
>PRK06202 hypothetical protein; Provisional
Probab=98.64 E-value=2e-07 Score=79.41 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=74.6
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~ 107 (220)
+++..+....++.+|||+||| +|..+..|+..+++. +.+|+++|++ +++++.|++.... .++++.++++.++ +
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG-~G~~~~~L~~~~~~~g~~~~v~gvD~s-~~~l~~a~~~~~~--~~~~~~~~~~~~l-~ 124 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCG-GGDLAIDLARWARRDGLRLEVTAIDPD-PRAVAFARANPRR--PGVTFRQAVSDEL-V 124 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccC-CCHHHHHHHHHHHhCCCCcEEEEEcCC-HHHHHHHHhcccc--CCCeEEEEecccc-c
Confidence 344333344567899999997 999999998765431 3599999999 9999999987652 2466666665443 2
Q ss_pred hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 108 GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 108 ~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
...++||+|+.-..-+. .+....++.+.+. + +|++++.
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~--~--~~~~~i~ 165 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDAEVVRLLADSAAL--A--RRLVLHN 165 (232)
T ss_pred ccCCCccEEEECCeeecCChHHHHHHHHHHHHh--c--CeeEEEe
Confidence 22468999998754311 1234678888876 4 2544444
No 155
>PRK05785 hypothetical protein; Provisional
Probab=98.62 E-value=5.5e-07 Score=77.02 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 30 EFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 30 ~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
+++..+... .++.+|||+||| +|..+..|+... +++|++||++ +++++.|++. .+++++|+++ +|.
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcG-tG~~~~~l~~~~---~~~v~gvD~S-~~Ml~~a~~~-------~~~~~~d~~~-lp~ 106 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAG-KGELSYHFKKVF---KYYVVALDYA-ENMLKMNLVA-------DDKVVGSFEA-LPF 106 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCC-CCHHHHHHHHhc---CCEEEEECCC-HHHHHHHHhc-------cceEEechhh-CCC
Confidence 344444432 347899999997 999999988753 4799999999 9999998864 2457889887 454
Q ss_pred cCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCC
Q 042616 109 DYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGS 142 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~ 142 (220)
..++||+|+.-...+ -.+....++.+.+. |+|
T Consensus 107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~Rv--Lkp 139 (226)
T PRK05785 107 RDKSFDVVMSSFALHASDNIEKVIAEFTRV--SRK 139 (226)
T ss_pred CCCCEEEEEecChhhccCCHHHHHHHHHHH--hcC
Confidence 457899999766442 14667889999998 887
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.59 E-value=1.6e-06 Score=76.02 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=77.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
..+.+...+.+...+...+..+||||||| +|..|..|+.. +.+|+++|.| +.+++.+++++.. ++++++++|
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G-~G~lt~~L~~~----~~~v~avE~d-~~~~~~~~~~~~~--~~v~~i~~D 95 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPG-LGALTEPLLER----AAKVTAVEID-RDLAPILAETFAE--DNLTIIEGD 95 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCC-ccHHHHHHHHh----CCcEEEEECC-HHHHHHHHHhhcc--CceEEEECh
Confidence 35677777777777777788899999997 99999999886 3599999999 9999999988754 689999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
+.++-.. .-.+|.|+-..+- .....++..+..
T Consensus 96 ~~~~~~~-~~~~~~vv~NlPY--~iss~ii~~~l~ 127 (272)
T PRK00274 96 ALKVDLS-ELQPLKVVANLPY--NITTPLLFHLLE 127 (272)
T ss_pred hhcCCHH-HcCcceEEEeCCc--cchHHHHHHHHh
Confidence 9875211 1114667655443 444555555554
No 157
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.57 E-value=6.6e-07 Score=78.98 Aligned_cols=106 Identities=11% Similarity=0.144 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.|++|+=||+|..-.+++.|+..... +.+|++||.| +++.+.|++.++ +++.+++|+++|+.+.-.. ...||.|
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~-~~~v~~iD~d-~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGP-GARVHNIDID-PEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT---EEEEEESS-HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCC-CCeEEEEeCC-HHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEE
Confidence 35799999998888999999965433 6789999999 999999999886 7788999999999875422 4689999
Q ss_pred EEcCCCCCc----cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNIDID----GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~~----~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+-+-. + .=.++++.+.+. .+ +|++|+.-...
T Consensus 197 ~lAalV--g~~~e~K~~Il~~l~~~--m~-~ga~l~~Rsa~ 232 (276)
T PF03059_consen 197 FLAALV--GMDAEPKEEILEHLAKH--MA-PGARLVVRSAH 232 (276)
T ss_dssp EE-TT---S----SHHHHHHHHHHH--S--TTSEEEEEE--
T ss_pred EEhhhc--ccccchHHHHHHHHHhh--CC-CCcEEEEecch
Confidence 999877 5 778999999998 65 59999987443
No 158
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=9.8e-07 Score=78.47 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGD 101 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gd 101 (220)
+....--||..|-..... +|||+||| .|+.++.||+..| ..+|+.+|.| ..+++.||+|++ ++ ++.+++..|
T Consensus 143 lD~GS~lLl~~l~~~~~~-~vlDlGCG-~Gvlg~~la~~~p--~~~vtmvDvn-~~Av~~ar~Nl~~N~~-~~~~v~~s~ 216 (300)
T COG2813 143 LDKGSRLLLETLPPDLGG-KVLDLGCG-YGVLGLVLAKKSP--QAKLTLVDVN-ARAVESARKNLAANGV-ENTEVWASN 216 (300)
T ss_pred cChHHHHHHHhCCccCCC-cEEEeCCC-ccHHHHHHHHhCC--CCeEEEEecC-HHHHHHHHHhHHHcCC-CccEEEEec
Confidence 444455566666555454 89999997 9999999999765 5899999999 999999999998 44 344888888
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCc--cH----HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDID--GH----KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~--~y----~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
..+-. .+.||+|+..++-+.+ -- .+.++.+.++ |++.|-+-++-|
T Consensus 217 ~~~~v---~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~--L~~gGeL~iVan 267 (300)
T COG2813 217 LYEPV---EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARH--LKPGGELWIVAN 267 (300)
T ss_pred ccccc---cccccEEEeCCCccCCcchhHHHHHHHHHHHHHh--hccCCEEEEEEc
Confidence 87755 3489999999887332 11 3678888999 988666656655
No 159
>PHA03411 putative methyltransferase; Provisional
Probab=98.55 E-value=1.3e-06 Score=77.19 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=61.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
......+|||+||| +|..++.++...+ +.+|++||.+ +.+++.|++++ .+++++++|+.+... ...||+|
T Consensus 61 ~~~~~grVLDLGcG-sGilsl~la~r~~--~~~V~gVDis-p~al~~Ar~n~----~~v~~v~~D~~e~~~--~~kFDlI 130 (279)
T PHA03411 61 DAHCTGKVLDLCAG-IGRLSFCMLHRCK--PEKIVCVELN-PEFARIGKRLL----PEAEWITSDVFEFES--NEKFDVV 130 (279)
T ss_pred ccccCCeEEEcCCC-CCHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHhC----cCCEEEECchhhhcc--cCCCcEE
Confidence 34446789999997 8999888776432 4699999999 99999999875 468999999998753 3689999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
+.+.+-
T Consensus 131 IsNPPF 136 (279)
T PHA03411 131 ISNPPF 136 (279)
T ss_pred EEcCCc
Confidence 998876
No 160
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.55 E-value=1.2e-06 Score=75.97 Aligned_cols=104 Identities=15% Similarity=0.059 Sum_probs=77.7
Q ss_pred CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
+|. .+.+...+.+...+...+.+.||||||| +|..|..|+.. +.+|+++|.| +.+++.+++++.. ..+++++
T Consensus 8 gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G-~G~lt~~L~~~----~~~v~~iE~d-~~~~~~l~~~~~~-~~~v~v~ 80 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAANVLEGDVVLEIGPG-LGALTEPLLKR----AKKVTAIEID-PRLAEILRKLLSL-YERLEVI 80 (253)
T ss_pred CCccCCCHHHHHHHHHhcCCCCcCEEEEeCCC-CCHHHHHHHHh----CCcEEEEECC-HHHHHHHHHHhCc-CCcEEEE
Confidence 454 4777887777777777788999999997 99999999875 3469999999 9999999988754 3679999
Q ss_pred EcchhhhhhhcCCCcc---EEEEcCCCCCccHHHHHHHHH
Q 042616 99 KGDAQKLLMGDYRGAD---FVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 99 ~gda~~~L~~~~~~~D---~VfiD~~k~~~~y~~~l~~l~ 135 (220)
++|+.+.-. ..+| +|+-.-+- ......+..+.
T Consensus 81 ~~D~~~~~~---~~~d~~~~vvsNlPy--~i~~~il~~ll 115 (253)
T TIGR00755 81 EGDALKVDL---PDFPKQLKVVSNLPY--NISSPLIFKLL 115 (253)
T ss_pred ECchhcCCh---hHcCCcceEEEcCCh--hhHHHHHHHHh
Confidence 999987432 2455 66655544 44455555555
No 161
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.55 E-value=9.1e-07 Score=69.71 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh
Q 042616 25 EPDVGEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ 103 (220)
Q Consensus 25 ~p~~~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~ 103 (220)
.....+++..+.. ..+..+||||||| .|..+..|+.. +-+++.+|++ +..++. .++....-+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~----~~~~~g~D~~-~~~~~~---------~~~~~~~~~~~ 70 (161)
T PF13489_consen 6 YRAYADLLERLLPRLKPGKRVLDIGCG-TGSFLRALAKR----GFEVTGVDIS-PQMIEK---------RNVVFDNFDAQ 70 (161)
T ss_dssp CHCHHHHHHHHHTCTTTTSEEEEESST-TSHHHHHHHHT----TSEEEEEESS-HHHHHH---------TTSEEEEEECH
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEcCC-CCHHHHHHHHh----CCEEEEEECC-HHHHhh---------hhhhhhhhhhh
Confidence 3455677887775 6778999999997 89988888653 5599999999 888876 12233333222
Q ss_pred hhhhhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 104 KLLMGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+.. ...++||+|+.-.-- .-.+...+++.+.+. |+| ||++++....
T Consensus 71 ~~~-~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~--Lkp-gG~l~~~~~~ 117 (161)
T PF13489_consen 71 DPP-FPDGSFDLIICNDVLEHLPDPEEFLKELSRL--LKP-GGYLVISDPN 117 (161)
T ss_dssp THH-CHSSSEEEEEEESSGGGSSHHHHHHHHHHHC--EEE-EEEEEEEEEB
T ss_pred hhh-ccccchhhHhhHHHHhhcccHHHHHHHHHHh--cCC-CCEEEEEEcC
Confidence 322 125799999976544 114568889999998 886 8888887654
No 162
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.54 E-value=5.4e-07 Score=80.32 Aligned_cols=89 Identities=21% Similarity=0.202 Sum_probs=73.0
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
.|+|..|. ..+...+||.+|| .|.-|..|+...++ .|+|+++|.| +++++.|++.+.. .+++++++++..++...
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG-~GGhS~~il~~~~~-~g~VigiD~D-~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFG-GGGHSRAILERLGP-KGRLIAIDRD-PDAIAAAKDRLKP-FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcC-ChHHHHHHHHhCCC-CCEEEEEcCC-HHHHHHHHHhhcc-CCcEEEEeCCHHHHHHH
Confidence 45566553 4556799999986 89999999998765 7999999999 9999999998865 57899999999987644
Q ss_pred cCC---CccEEEEcCCC
Q 042616 109 DYR---GADFVLIDCNI 122 (220)
Q Consensus 109 ~~~---~~D~VfiD~~k 122 (220)
+.. ++|.|++|...
T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHcCCCccCEEEECCCc
Confidence 333 79999999887
No 163
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=3.4e-07 Score=77.55 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=86.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEE-EEEcchhhhhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIE-FVKGDAQKLLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve-~v~gda~~~L~~~-~~~~D~Vf 117 (220)
---+||+||| +|..=-..-- .+ +.+|||||++ +.+-+.|.+.++ .-..+++ |+++++++ ||++ ..++|.|+
T Consensus 77 K~~vLEvgcG-tG~Nfkfy~~--~p-~~svt~lDpn-~~mee~~~ks~~E~k~~~~~~fvva~ge~-l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCG-TGANFKFYPW--KP-INSVTCLDPN-EKMEEIADKSAAEKKPLQVERFVVADGEN-LPQLADGSYDTVV 150 (252)
T ss_pred ccceEEeccc-CCCCcccccC--CC-CceEEEeCCc-HHHHHHHHHHHhhccCcceEEEEeechhc-CcccccCCeeeEE
Confidence 3447999996 8875332221 13 7899999999 999999999886 3334576 99999988 5555 57899985
Q ss_pred ---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC-CCCcc-----ceEEEeeecCCcEEEEEE
Q 042616 118 ---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP-KGSWR-----GYKTHFLPIGEGLLVTRI 177 (220)
Q Consensus 118 ---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~-~g~~~-----~~~s~~lPig~Gl~v~~~ 177 (220)
+=|.. .+..+.|+...+. |+|.|.++....+-- -+.|+ .++..---+++|-.+++-
T Consensus 151 ~TlvLCSv--e~~~k~L~e~~rl--LRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd 215 (252)
T KOG4300|consen 151 CTLVLCSV--EDPVKQLNEVRRL--LRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD 215 (252)
T ss_pred EEEEEecc--CCHHHHHHHHHHh--cCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh
Confidence 55777 8889999999999 988444444443322 22454 234333336777666654
No 164
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.52 E-value=2.1e-06 Score=77.23 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc--c----CCcEEEEEcchhhhhhhcCCCc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR--Y----ANCIEFVKGDAQKLLMGDYRGA 113 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g--~----~~~Ve~v~gda~~~L~~~~~~~ 113 (220)
+..+|||+||| +|..++.|+.. +.+|+++|.+ +.+++.|+++++. . ..++++..+|..+. .+.|
T Consensus 144 ~~~~VLDlGcG-tG~~a~~la~~----g~~V~gvD~S-~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCG-TGSLAIPLALE----GAIVSASDIS-AAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKY 213 (315)
T ss_pred CCCEEEEecCC-CCHHHHHHHHC----CCEEEEEECC-HHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCc
Confidence 56799999997 99999999863 6799999999 9999999998862 1 24689999997552 3689
Q ss_pred cEEEEc-CCCC--CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 114 DFVLID-CNID--IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 114 D~VfiD-~~k~--~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+|+.= .-.+ .......++.+... . +|++++..
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~l---~-~g~liIs~ 249 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLASL---A-EKRLIISF 249 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHhh---c-CCEEEEEe
Confidence 998732 2110 02234456666654 3 47777754
No 165
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.52 E-value=1.2e-06 Score=76.71 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCchHHH----HHHHHHHcCC---CCcEEEEEeCCchhHHHHHHHHhc-----------------------
Q 042616 40 NAQLIVMACSSIAVSR----TLALVAAARQ---TGGRVVCILSGVIGDIDASKKSLG----------------------- 89 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~s----Tl~LA~A~~~---~~grV~tIE~d~~~~~~~Ar~~l~----------------------- 89 (220)
++.+|+++||| +|-- ++.|++..+. .+.+|+++|++ +.+++.|++.+-
T Consensus 99 ~~~ri~d~GCg-tGee~YslA~~l~e~~~~~~~~~~~I~g~Dis-~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 99 RRVRIWSAGCS-TGEEPYSLAMLLAETLPKAREPDVKILATDID-LKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCEEEEecccc-CChHHHHHHHHHHHHhhhcCCCCeEEEEEECC-HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 45799999996 9963 4455555442 24689999999 999999998541
Q ss_pred -----ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 90 -----RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 90 -----g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+.++|+|.++|..+.-+ ..++||+||.-.-- +...-..+++.+.+. |+| ||.++.-
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~--L~p-GG~L~lg 241 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA--LKP-GGYLFLG 241 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCHHHHHHHHHHHHHH--hCC-CeEEEEE
Confidence 123579999999987432 24789999963211 002335688899988 876 7877764
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.48 E-value=2e-06 Score=70.67 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=70.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--c--cCCcEEEEEcchhhhh-h-hc-
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--R--YANCIEFVKGDAQKLL-M-GD- 109 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g--~~~~Ve~v~gda~~~L-~-~~- 109 (220)
...++++|||+||| +|..++.+|... ...+|+.-|.+ + .++..+.|++ + ...+|++..-|..+.+ + .+
T Consensus 42 ~~~~~~~VLELGaG-~Gl~gi~~a~~~--~~~~Vv~TD~~-~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAG-TGLPGIAAAKLF--GAARVVLTDYN-E-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-T-TSHHHHHHHHT---T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCc-cchhHHHHHhcc--CCceEEEeccc-h-hhHHHHHHHHhccccccccccCcEEEecCcccccccc
Confidence 46678999999997 999999888763 25799999999 7 9999999997 3 3466777775542211 1 11
Q ss_pred CCCccEEE-EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 110 YRGADFVL-IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 110 ~~~~D~Vf-iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+||+|+ -|+--+...+...++.+... +.+.+.+++++-..
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~l--l~~~~~vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRL--LKPNGKVLLAYKRR 159 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHH--BTT-TTEEEEEE-S
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHH--hCCCCEEEEEeCEe
Confidence 35899998 35444446778889999888 88878888877443
No 167
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.45 E-value=1.9e-06 Score=75.07 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=88.3
Q ss_pred HHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC----CcEEEEEeCCchhHHHHHHHHhc--ccCCc--EEEEEcc
Q 042616 30 EFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT----GGRVVCILSGVIGDIDASKKSLG--RYANC--IEFVKGD 101 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~----~grV~tIE~d~~~~~~~Ar~~l~--g~~~~--Ve~v~gd 101 (220)
.|+..|-.. +..++||+++| +|-.|..+...+..+ .++|+-+|++ |.+++.+++... ++.+. +++++||
T Consensus 91 ~~v~~L~p~-~~m~~lDvaGG-TGDiaFril~~v~s~~~~~~~~V~v~Din-p~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 91 MFVSKLGPG-KGMKVLDVAGG-TGDIAFRILRHVKSQFGDRESKVTVLDIN-PHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HhhhccCCC-CCCeEEEecCC-cchhHHHHHHhhccccCCCCceEEEEeCC-HHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 344444333 33789999965 999999999887652 3899999999 999999998774 56433 9999999
Q ss_pred hhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|++ ||...+.||...+-..-++ ...++.++.+.+. |+| ||.+.+-
T Consensus 168 AE~-LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRV--LKp-GGrf~cL 213 (296)
T KOG1540|consen 168 AED-LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRV--LKP-GGRFSCL 213 (296)
T ss_pred ccc-CCCCCCcceeEEEecceecCCCHHHHHHHHHHh--cCC-CcEEEEE
Confidence 998 5654688999998877633 3457889999998 887 8887764
No 168
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.45 E-value=2.9e-06 Score=70.79 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=77.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~ 120 (220)
+++||||| .|+=++.||-+.| .-+++-||+. ..++..-+.... ++ ++++++++.+++ +.....||+|+.=+
T Consensus 51 ~~lDiGSG-aGfPGipLaI~~p--~~~~~LvEs~-~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSG-AGFPGIPLAIARP--DLQVTLVESV-GKKVAFLKEVVRELGL-SNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETST-TTTTHHHHHHH-T--TSEEEEEESS-HHHHHHHHHHHHHHT--SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred eEEecCCC-CCChhHHHHHhCC--CCcEEEEeCC-chHHHHHHHHHHHhCC-CCEEEEEeeecc--cccCCCccEEEeeh
Confidence 79999997 8999999998876 5889999999 999998888887 77 589999999999 33357899999776
Q ss_pred CCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 121 NIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 121 ~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
- ......++.+.+. +++ ||.+++.
T Consensus 124 v---~~l~~l~~~~~~~--l~~-~G~~l~~ 147 (184)
T PF02527_consen 124 V---APLDKLLELARPL--LKP-GGRLLAY 147 (184)
T ss_dssp S---SSHHHHHHHHGGG--EEE-EEEEEEE
T ss_pred h---cCHHHHHHHHHHh--cCC-CCEEEEE
Confidence 4 4678899999998 875 8877764
No 169
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.6e-06 Score=77.74 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=98.8
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
|...+....+++...+....+..+|||.+++ .|-=|..||+.+...++.|+++|.+ +.+++..+.|++ |+ .++.+
T Consensus 136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAA-PGGKTthla~~~~~~~~iV~A~D~~-~~Rl~~l~~nl~RlG~-~nv~~ 212 (355)
T COG0144 136 GLIYVQDEASQLPALVLDPKPGERVLDLCAA-PGGKTTHLAELMENEGAIVVAVDVS-PKRLKRLRENLKRLGV-RNVIV 212 (355)
T ss_pred eEEEEcCHHHHHHHHHcCCCCcCEEEEECCC-CCCHHHHHHHhcCCCCceEEEEcCC-HHHHHHHHHHHHHcCC-CceEE
Confidence 3445666677888888888899999999974 8888999999988767788999999 999999999998 77 45888
Q ss_pred EEcchhhhhhhc--CCCccEEEEcCCCCC-----------------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 98 VKGDAQKLLMGD--YRGADFVLIDCNIDI-----------------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 98 v~gda~~~L~~~--~~~~D~VfiD~~k~~-----------------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++.|+....... ...||.|++|++=.. ..-.++++.+.+. |+| ||+||...+
T Consensus 213 ~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~--lk~-GG~LVYSTC 289 (355)
T COG0144 213 VNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL--LKP-GGVLVYSTC 289 (355)
T ss_pred EecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh--cCC-CCEEEEEcc
Confidence 898887543222 235999999987511 0114456667777 775 999999877
Q ss_pred CC
Q 042616 153 LP 154 (220)
Q Consensus 153 ~~ 154 (220)
..
T Consensus 290 S~ 291 (355)
T COG0144 290 SL 291 (355)
T ss_pred CC
Confidence 64
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.39 E-value=6.2e-06 Score=68.19 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=84.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC-------cEEEEEeCCchhHHHHHHHHhc--cc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTG-------GRVVCILSGVIGDIDASKKSLG--RY 91 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-------grV~tIE~d~~~~~~~Ar~~l~--g~ 91 (220)
.-.+.|..|..|..++...+...+||--|| +|...+-.|....... .++++.|.| +++++.|++|++ ++
T Consensus 9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CG-sGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~-~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCG-SGTILIEAALMGANIPPLNDINELKIIGSDID-PKAVRGARENLKAAGV 86 (179)
T ss_dssp STSS-HHHHHHHHHHTT--TTS-EEETT-T-TSHHHHHHHHHHTTTSTTTH-CH--EEEEESS-HHHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHhCCCCCCEEeecCCC-CCHHHHHHHHHhhCcccccccccccEEecCCC-HHHHHHHHHHHHhccc
Confidence 346788899999999988888999999886 7877765444333211 148999999 999999999998 77
Q ss_pred CCcEEEEEcchhhhhhhcCCCccEEEEcCCCCC---------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 92 ANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI---------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 92 ~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~---------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.|++.++|+.++- ...+.+|.|+.|.+-.. ..|...++.+.+. +++ ..+++.
T Consensus 87 ~~~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~--l~~-~~v~l~ 149 (179)
T PF01170_consen 87 EDYIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRV--LKP-RAVFLT 149 (179)
T ss_dssp CGGEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCH--STT-CEEEEE
T ss_pred CCceEEEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHH--CCC-CEEEEE
Confidence 778999999999854 33578999999987621 3466777888887 765 555444
No 171
>PLN02672 methionine S-methyltransferase
Probab=98.36 E-value=3.2e-06 Score=86.45 Aligned_cols=93 Identities=11% Similarity=-0.031 Sum_probs=69.1
Q ss_pred ChhHHHHHHHHHhhC----CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--cc-------
Q 042616 25 EPDVGEFISALAAGN----NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RY------- 91 (220)
Q Consensus 25 ~p~~~~~L~~La~~~----~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~------- 91 (220)
.|++-.|+..|.... ++++|||+||| +|..++.|+...+ .++|+++|.+ +++++.|++|++ ++
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~G-SG~Iai~La~~~~--~~~v~avDis-~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCG-NGWISIAIAEKWL--PSKVYGLDIN-PRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecc-hHHHHHHHHHHCC--CCEEEEEECC-HHHHHHHHHHHHHcCcccccccc
Confidence 344445555543221 24689999997 9999999998765 4799999999 999999999996 32
Q ss_pred --------CCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 92 --------ANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 92 --------~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
.++|+|+++|..+.++....+||+|+-..+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP 212 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCC
Confidence 247999999998876432236999986554
No 172
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.36 E-value=3.6e-06 Score=70.66 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=74.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC--CCccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY--RGADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~--~~~D~Vf 117 (220)
..+|||||| .|-+.+.+|..-| +-.+++||+. ...+..|.+.+. ++ .|+.++++||..+++.+. +++|-|+
T Consensus 19 ~l~lEIG~G-~G~~l~~~A~~~P--d~n~iGiE~~-~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCG-KGEFLIELAKRNP--DINFIGIEIR-KKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-T-TSHHHHHHHHHST--TSEEEEEES--HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CeEEEecCC-CCHHHHHHHHHCC--CCCEEEEecc-hHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEE
Confidence 388999997 9999999998754 6899999999 998888887776 66 789999999999886653 6899998
Q ss_pred EcCCCC--------Cc-cHHHHHHHHHhhcCCCCCCEEE
Q 042616 118 IDCNID--------ID-GHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 118 iD~~k~--------~~-~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
|-.+-+ ++ -..+.++.+.+. |+| ||.|
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~--L~~-gG~l 129 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARV--LKP-GGEL 129 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHH--EEE-EEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHH--cCC-CCEE
Confidence 865430 01 237788999998 876 6764
No 173
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.33 E-value=9e-06 Score=73.32 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEE-cchhhhhhhc---CCC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVK-GDAQKLLMGD---YRG 112 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~-gda~~~L~~~---~~~ 112 (220)
+..++|||||| +|.....|+...+ +.+++++|+| +..++.|++|++ ++.++|+++. .+..++.... .+.
T Consensus 114 ~~~~vLDIGtG-ag~I~~lLa~~~~--~~~~~atDId-~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVG-ANCIYPLIGVHEY--GWRFVGSDID-PQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCC-ccHHHHHHHhhCC--CCEEEEEeCC-HHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCc
Confidence 35789999997 7777666765443 6899999999 999999999997 3778899964 5555544322 357
Q ss_pred ccEEEEcCCC
Q 042616 113 ADFVLIDCNI 122 (220)
Q Consensus 113 ~D~VfiD~~k 122 (220)
||||+...+-
T Consensus 190 fDlivcNPPf 199 (321)
T PRK11727 190 FDATLCNPPF 199 (321)
T ss_pred eEEEEeCCCC
Confidence 9999988766
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.32 E-value=2.8e-06 Score=79.74 Aligned_cols=103 Identities=10% Similarity=0.174 Sum_probs=73.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.|+++||| +|......++|+... ..+|++||.+ +.+....++.++ +++++|+++++|.+++-. ..++|+|
T Consensus 187 ~~vVldVGAG-rGpL~~~al~A~~~~~~a~~VyAVEkn-~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAG-RGPLSMFALQAGARAGGAVKVYAVEKN-PNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDII 262 (448)
T ss_dssp T-EEEEES-T-TSHHHHHHHHTTHHHCCESEEEEEESS-THHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEE
T ss_pred ceEEEEeCCC-ccHHHHHHHHHHHHhCCCeEEEEEcCC-HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEE
Confidence 4679999997 999887766664221 3589999999 887777666543 788899999999998642 4689999
Q ss_pred E---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 L---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 f---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+ ++.--+++.-++.+....+. |+| ||+++=.
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rf--Lkp-~Gi~IP~ 296 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRF--LKP-DGIMIPS 296 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGG--EEE-EEEEESS
T ss_pred EEeccCCccccccCHHHHHHHHhh--cCC-CCEEeCc
Confidence 7 44333346678899988888 876 7877643
No 175
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.32 E-value=9.1e-07 Score=77.21 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=72.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--c-cCC----cEEEEEcchhhhhhhcCCCcc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--R-YAN----CIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g-~~~----~Ve~v~gda~~~L~~~~~~~D 114 (220)
++|||+||| .|..|..||+- |..|++||.. +++++.|++... . +.. ++++.+.++++.- +.||
T Consensus 91 ~~ilDvGCG-gGLLSepLArl----ga~V~GID~s-~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fD 160 (282)
T KOG1270|consen 91 MKILDVGCG-GGLLSEPLARL----GAQVTGIDAS-DDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFD 160 (282)
T ss_pred ceEEEeccC-ccccchhhHhh----CCeeEeeccc-HHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccc
Confidence 679999997 89999999974 8899999999 999999999854 2 223 4788888877743 4599
Q ss_pred EEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.|+.=--. +..+..+.++.+..+ |+|.|.+++.
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~--lkP~G~lfit 194 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSAL--LKPNGRLFIT 194 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHH--hCCCCceEee
Confidence 99843211 114567888999998 9885555544
No 176
>PRK00536 speE spermidine synthase; Provisional
Probab=98.30 E-value=1.1e-05 Score=70.86 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=72.9
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc-CCcEEEEEcchhhhhhhc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY-ANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~-~~~Ve~v~gda~~~L~~~ 109 (220)
|+..-+|++||-||.| -|.+.--+. +. ..+|+-||+| ++.++.+|+++- ++ ..+++++.. +....
T Consensus 67 l~~h~~pk~VLIiGGG-DGg~~REvL---kh-~~~v~mVeID-~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~ 136 (262)
T PRK00536 67 GCTKKELKEVLIVDGF-DLELAHQLF---KY-DTHVDFVQAD-EKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLD 136 (262)
T ss_pred HhhCCCCCeEEEEcCC-chHHHHHHH---Cc-CCeeEEEECC-HHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhcc
Confidence 3345778999999954 776554444 44 3599999999 999999999774 34 356888862 22211
Q ss_pred CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 110 YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 110 ~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+.||+|++|..- -.+.++.+.+. |+| ||++|+..
T Consensus 137 ~~~fDVIIvDs~~----~~~fy~~~~~~--L~~-~Gi~v~Qs 171 (262)
T PRK00536 137 IKKYDLIICLQEP----DIHKIDGLKRM--LKE-DGVFISVA 171 (262)
T ss_pred CCcCCEEEEcCCC----ChHHHHHHHHh--cCC-CcEEEECC
Confidence 3689999999754 25677888888 876 99999864
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.5e-05 Score=69.82 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=81.8
Q ss_pred cCCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEE
Q 042616 19 MGKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEF 97 (220)
Q Consensus 19 ~~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~ 97 (220)
.||. .+.+...+-+-..+...+...|||||.| .|..|..|++. +.+|++||.| +..++.-++.+.. .+++++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG-~GaLT~~Ll~~----~~~v~aiEiD-~~l~~~L~~~~~~-~~n~~v 80 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAANISPGDNVLEIGPG-LGALTEPLLER----AARVTAIEID-RRLAEVLKERFAP-YDNLTV 80 (259)
T ss_pred cccccccCHHHHHHHHHhcCCCCCCeEEEECCC-CCHHHHHHHhh----cCeEEEEEeC-HHHHHHHHHhccc-ccceEE
Confidence 3554 4667777777778788888999999996 99999999985 6789999999 9999988888762 378999
Q ss_pred EEcchhhhh-hhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 98 VKGDAQKLL-MGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 98 v~gda~~~L-~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
++||+..+- +.+. .++.||-.-+- .--.+++..+...
T Consensus 81 i~~DaLk~d~~~l~-~~~~vVaNlPY--~Isspii~kll~~ 118 (259)
T COG0030 81 INGDALKFDFPSLA-QPYKVVANLPY--NISSPILFKLLEE 118 (259)
T ss_pred EeCchhcCcchhhc-CCCEEEEcCCC--cccHHHHHHHHhc
Confidence 999998753 2211 67888866554 4445555444443
No 178
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.28 E-value=2.5e-06 Score=72.93 Aligned_cols=99 Identities=20% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCChh-HHHHHHHHHhhC-CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 23 GKEPD-VGEFISALAAGN-NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 23 ~~~p~-~~~~L~~La~~~-~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
.+.|+ .++.+..-+-.. ++..|++.-|| .|-.|+..|.- +..|++||.| |..+..||.|++ |..++|+|+
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g-~gGntiqfa~~----~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI 148 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDAFCG-VGGNTIQFALQ----GPYVIAIDID-PVKIACARHNAEVYGVPDRITFI 148 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhhhhc-CCchHHHHHHh----CCeEEEEecc-HHHHHHHhccceeecCCceeEEE
Confidence 34444 467776655544 88999998876 45566666642 7799999999 999999999999 888999999
Q ss_pred EcchhhhhhhcC---CCccEEEEcCCCCCccH
Q 042616 99 KGDAQKLLMGDY---RGADFVLIDCNIDIDGH 127 (220)
Q Consensus 99 ~gda~~~L~~~~---~~~D~VfiD~~k~~~~y 127 (220)
+||..++...+. ..+|+||+-++-....|
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred echHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence 999999876652 34789998876533344
No 179
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.28 E-value=1.1e-05 Score=72.01 Aligned_cols=117 Identities=10% Similarity=-0.030 Sum_probs=80.6
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL 106 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L 106 (220)
..+.-.+. ....++||||||+ .||.+..|+.+- ...|++||++ +......+..-+ +. +...+.....-+-|
T Consensus 105 ~rl~p~l~-~L~gk~VLDIGC~-nGY~~frM~~~G---A~~ViGiDP~-~lf~~QF~~i~~~lg~-~~~~~~lplgvE~L 177 (315)
T PF08003_consen 105 DRLLPHLP-DLKGKRVLDIGCN-NGYYSFRMLGRG---AKSVIGIDPS-PLFYLQFEAIKHFLGQ-DPPVFELPLGVEDL 177 (315)
T ss_pred HHHHhhhC-CcCCCEEEEecCC-CcHHHHHHhhcC---CCEEEEECCC-hHHHHHHHHHHHHhCC-CccEEEcCcchhhc
Confidence 44444443 4577999999997 899999888753 3579999999 777655333222 33 23333444455667
Q ss_pred hhcCCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 107 MGDYRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
|. .+.||.||.=+-- +..+..+.+++++.. |++ ||.+|.+...-.|
T Consensus 178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~--L~~-gGeLvLETlvi~g 224 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDS--LRP-GGELVLETLVIDG 224 (315)
T ss_pred cc-cCCcCEEEEeeehhccCCHHHHHHHHHHh--hCC-CCEEEEEEeeecC
Confidence 76 6789999965533 225778889999998 876 9999987665444
No 180
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.26 E-value=1.7e-05 Score=68.31 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=78.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcC--CCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDY--RGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~--~~~D~V 116 (220)
+..+|||||| .|-+.+.+|..-|+ --.++||+. ...+..|.+.+. ++ +|+.++++||.++++.+. +++|-|
T Consensus 49 ~pi~lEIGfG-~G~~l~~~A~~nP~--~nfiGiEi~-~~~v~~~l~k~~~~~l-~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 49 APIVLEIGFG-MGEFLVEMAKKNPE--KNFLGIEIR-VPGVAKALKKIKELGL-KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred CcEEEEECCC-CCHHHHHHHHHCCC--CCEEEEEEe-hHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 4578999997 89999999998765 589999999 777777777775 66 499999999999997763 367777
Q ss_pred EE---cCCC------CCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LI---DCNI------DIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fi---D~~k------~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+| |.+. ++=-+...++.+.+. |++ ||+|-+
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~--Lk~-gG~l~~ 162 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARK--LKP-GGVLHF 162 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHH--ccC-CCEEEE
Confidence 66 5443 112458889999998 876 676543
No 181
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.23 E-value=3.4e-06 Score=72.90 Aligned_cols=115 Identities=12% Similarity=0.137 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCC-EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc-CCcEEEEEcchhhh
Q 042616 29 GEFISALAAGNNAQ-LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY-ANCIEFVKGDAQKL 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~-~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~-~~~Ve~v~gda~~~ 105 (220)
..++..++...... .++|+||| +|-.+..+|.- --+|+++|++ +++++.|++... .+ .....+...+..++
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G-~Gqa~~~iae~----~k~VIatD~s-~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTG-NGQAARGIAEH----YKEVIATDVS-EAMLKVAKKHPPVTYCHTPSTMSSDEMVDL 94 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccC-CCcchHHHHHh----hhhheeecCC-HHHHHHhhcCCCcccccCCccccccccccc
Confidence 78888888877765 88999997 99766666653 3589999999 999999999876 22 12234444444444
Q ss_pred hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 106 LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+ ...+++|+|..--..+-=+..+.++.+.+. |+++||++++=|-
T Consensus 95 ~-g~e~SVDlI~~Aqa~HWFdle~fy~~~~rv--LRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 95 L-GGEESVDLITAAQAVHWFDLERFYKEAYRV--LRKDGGLIAVWNY 138 (261)
T ss_pred c-CCCcceeeehhhhhHHhhchHHHHHHHHHH--cCCCCCEEEEEEc
Confidence 4 225789999865444222558889999999 9999989876443
No 182
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=1.5e-05 Score=68.06 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=88.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCC-ccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRG-ADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~-~D~Vf 117 (220)
+++++||||| .|.=++.||-+.+ +.+||=||+. ..++..-+...+ ++ ++++++++.++++-+. .. ||+|.
T Consensus 68 ~~~~~DIGSG-aGfPGipLAI~~p--~~~vtLles~-~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~--~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSG-AGFPGIPLAIAFP--DLKVTLLESL-GKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE--KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCC-CCCchhhHHHhcc--CCcEEEEccC-chHHHHHHHHHHHhCC-CCeEEehhhHhhcccc--cccCcEEE
Confidence 6899999997 8999999997665 4679999999 999998888876 66 6899999999997643 23 99998
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe-cCCCCC----------Ccc----ceEEEeeecCCc
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY-NALPKG----------SWR----GYKTHFLPIGEG 171 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d-Nv~~~g----------~~~----~~~s~~lPig~G 171 (220)
.=+- ......++.+.+. +++ ||.+++. -.-.++ .|. .+.+..+|.++|
T Consensus 141 sRAv---a~L~~l~e~~~pl--lk~-~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~ 203 (215)
T COG0357 141 SRAV---ASLNVLLELCLPL--LKV-GGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDG 203 (215)
T ss_pred eehc---cchHHHHHHHHHh--ccc-CCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCC
Confidence 6553 4667889999998 776 5554432 111222 122 567778888865
No 183
>PRK04148 hypothetical protein; Provisional
Probab=98.20 E-value=1.4e-05 Score=63.49 Aligned_cols=98 Identities=17% Similarity=0.089 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhhCCCCEEEEEcCCchHH-HHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh
Q 042616 27 DVGEFISALAAGNNAQLIVMACSSIAVS-RTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL 105 (220)
Q Consensus 27 ~~~~~L~~La~~~~a~~ILEIGtg~~G~-sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~ 105 (220)
+.+++|.......+.++||||||| .|. .+..|++ .|-.|++||.+ +.+.+.|+++ .++++.+|..+-
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~G-fG~~vA~~L~~----~G~~ViaIDi~-~~aV~~a~~~------~~~~v~dDlf~p 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIG-FYFKVAKKLKE----SGFDVIVIDIN-EKAVEKAKKL------GLNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEec-CCHHHHHHHHH----CCCEEEEEECC-HHHHHHHHHh------CCeEEECcCCCC
Confidence 457777776666667899999997 886 6666664 27799999999 9988888775 378889988764
Q ss_pred hhhcCCCccEEEEcCCCCCccHHHHHHHHHhh
Q 042616 106 LMGDYRGADFVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
-+.+...+|+|+-==+. .+.....++.+.+.
T Consensus 71 ~~~~y~~a~liysirpp-~el~~~~~~la~~~ 101 (134)
T PRK04148 71 NLEIYKNAKLIYSIRPP-RDLQPFILELAKKI 101 (134)
T ss_pred CHHHHhcCCEEEEeCCC-HHHHHHHHHHHHHc
Confidence 44556889999843333 03334445555543
No 184
>PRK10742 putative methyltransferase; Provisional
Probab=98.17 E-value=1.3e-05 Score=69.80 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=69.7
Q ss_pred HHHHHHHHhhCCCC--EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc----------CCcEE
Q 042616 29 GEFISALAAGNNAQ--LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY----------ANCIE 96 (220)
Q Consensus 29 ~~~L~~La~~~~a~--~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~----------~~~Ve 96 (220)
++.|..-+...+.. +|||+-+| +|.-++-+|.. |++|+.||.+ +..+...+.+++.+ ..+++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAG-lG~Da~~las~----G~~V~~vEr~-p~vaalL~dgL~ra~~~~~~~~~~~~ri~ 148 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAG-LGRDAFVLASV----GCRVRMLERN-PVVAALLDDGLARGYADAEIGGWLQERLQ 148 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCC-ccHHHHHHHHc----CCEEEEEECC-HHHHHHHHHHHHHhhhccccchhhhceEE
Confidence 35555555445555 89998665 89988877763 7889999999 99999999888721 25699
Q ss_pred EEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
++++|+.++|......||+||+|..-
T Consensus 149 l~~~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 149 LIHASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred EEeCcHHHHHhhCCCCCcEEEECCCC
Confidence 99999999998766689999999865
No 185
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.15 E-value=2.1e-05 Score=71.26 Aligned_cols=116 Identities=17% Similarity=0.107 Sum_probs=90.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..++|..++.+..|++..+.+.|||==|| ||...+-.. - .|.++++.|.| ..+++-|+.|++ ++ ....++.
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcG-TGgiLiEag---l-~G~~viG~Did-~~mv~gak~Nl~~y~i-~~~~~~~ 251 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCG-TGGILIEAG---L-MGARVIGSDID-ERMVRGAKINLEYYGI-EDYPVLK 251 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCC-ccHHHHhhh---h-cCceEeecchH-HHHHhhhhhhhhhhCc-CceeEEE
Confidence 46899999999999999999999998775 776655322 2 38999999999 999999999999 44 4566666
Q ss_pred c-chhhhhhhcC-CCccEEEEcCCCCC----------ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 100 G-DAQKLLMGDY-RGADFVLIDCNIDI----------DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 100 g-da~~~L~~~~-~~~D~VfiD~~k~~----------~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ ||.. +| +. ..+|-|..|.+-.. +.|.+.|+.+.+. |++ ||.+|+
T Consensus 252 ~~Da~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~ev--Lk~-gG~~vf 308 (347)
T COG1041 252 VLDATN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEV--LKP-GGRIVF 308 (347)
T ss_pred eccccc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHH--hhc-CcEEEE
Confidence 6 8887 44 33 35999999987622 2377888888888 875 776555
No 186
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.14 E-value=7.7e-06 Score=68.58 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
.+.|-++++.... ..+.|+|+| +|..+...|.+ ..||++||.| |..+..|++|+. |+ +++++++|||.++
T Consensus 21 lavF~~ai~~va~-d~~~DLGaG-sGiLs~~Aa~~----A~rViAiE~d-Pk~a~~a~eN~~v~g~-~n~evv~gDA~~y 92 (252)
T COG4076 21 LAVFTSAIAEVAE-DTFADLGAG-SGILSVVAAHA----AERVIAIEKD-PKRARLAEENLHVPGD-VNWEVVVGDARDY 92 (252)
T ss_pred HHHHHHHHHHHhh-hceeeccCC-cchHHHHHHhh----hceEEEEecC-cHHHHHhhhcCCCCCC-cceEEEecccccc
Confidence 4566666666555 778999997 89988877766 4699999999 999999999987 65 7899999999885
Q ss_pred hhhcCCCccEEE---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 106 LMGDYRGADFVL---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 106 L~~~~~~~D~Vf---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
- ....|.|. +|...=.+....+++.+.+. |+- .+.|+
T Consensus 93 ~---fe~ADvvicEmlDTaLi~E~qVpV~n~vleF--Lr~-d~tii 132 (252)
T COG4076 93 D---FENADVVICEMLDTALIEEKQVPVINAVLEF--LRY-DPTII 132 (252)
T ss_pred c---ccccceeHHHHhhHHhhcccccHHHHHHHHH--hhc-CCccc
Confidence 3 24556664 33322112235566666665 554 33333
No 187
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.13 E-value=1.6e-05 Score=65.95 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
+..+|||+||| +|..+..|+... +..+++||.+ +++++.|++ .+++++++|+.+.++.. .++||+|+.
T Consensus 13 ~~~~iLDiGcG-~G~~~~~l~~~~---~~~~~giD~s-~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCG-DGELLALLRDEK---QVRGYGIEID-QDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCC-CCHHHHHHHhcc---CCcEEEEeCC-HHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 56799999997 999998887642 4578999999 988888764 24788999987755322 468999998
Q ss_pred cCCC-CCccHHHHHHHHHhh
Q 042616 119 DCNI-DIDGHKNVFRAAKES 137 (220)
Q Consensus 119 D~~k-~~~~y~~~l~~l~~~ 137 (220)
-..- .-.+....++.+.+.
T Consensus 82 ~~~l~~~~d~~~~l~e~~r~ 101 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLRV 101 (194)
T ss_pred hhHhHcCcCHHHHHHHHHHh
Confidence 6543 113456667777765
No 188
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=2e-05 Score=68.30 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc------C-----
Q 042616 26 PDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY------A----- 92 (220)
Q Consensus 26 p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~------~----- 92 (220)
++.-..|..|-.. ..++.+|||||. +|..|+.+|+-... .+|+++|+| +..++.|+++++ -. .
T Consensus 43 ~~~D~rLk~L~~~~f~~~~~LDIGCN-sG~lt~~iak~F~~--r~iLGvDID-~~LI~~Ark~~r~~~~~~~~~~~~~~~ 118 (288)
T KOG2899|consen 43 GDSDPRLKVLEKDWFEPKQALDIGCN-SGFLTLSIAKDFGP--RRILGVDID-PVLIQRARKEIRFPCDHETEVSGKFPA 118 (288)
T ss_pred CCCChhhhhccccccCcceeEeccCC-cchhHHHHHHhhcc--ceeeEeecc-HHHHHHHHHhccccccccccccCCCcc
Confidence 3444566666433 458999999997 89999999998753 779999999 999999999987 11 0
Q ss_pred ------------------------CcEEEEEc----chhhhhhhcCCCccEEE---------EcCCCCCccHHHHHHHHH
Q 042616 93 ------------------------NCIEFVKG----DAQKLLMGDYRGADFVL---------IDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 93 ------------------------~~Ve~v~g----da~~~L~~~~~~~D~Vf---------iD~~k~~~~y~~~l~~l~ 135 (220)
+++.|..+ +..++|......||.|+ +...- +-..+.|+.+.
T Consensus 119 ~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL~~ff~kis 196 (288)
T KOG2899|consen 119 SFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGLRRFFRKIS 196 (288)
T ss_pred ccccccccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHHHHHHHHHH
Confidence 01222111 22334422246799997 22222 44578899999
Q ss_pred hhcCCCCCCEEEEEecCCCCC--------------Ccc------ceEEEeeecCCcEEEEEEee
Q 042616 136 ESVMHGSGAGVIVGYNALPKG--------------SWR------GYKTHFLPIGEGLLVTRIGE 179 (220)
Q Consensus 136 ~~~~L~~~Ggviv~dNv~~~g--------------~~~------~~~s~~lPig~Gl~v~~~~~ 179 (220)
.+ |.| ||++|..-=-|+. .++ .|+..++.++-|++=.....
T Consensus 197 ~l--l~p-gGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 197 SL--LHP-GGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred Hh--hCc-CcEEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 98 865 9999987333322 011 57788888888877665553
No 189
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.09 E-value=2.9e-05 Score=64.90 Aligned_cols=118 Identities=10% Similarity=0.047 Sum_probs=82.2
Q ss_pred HHHHHHHHh----hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 29 GEFISALAA----GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 29 ~~~L~~La~----~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
-.+|..+.. ..+|.+|||+||| -|..-..|+.--- .+.++.||-+ +++++.|+...+ ++++.|+|.+.|.
T Consensus 52 v~wl~d~~~~~rv~~~A~~VlDLGtG-NG~~L~~L~~egf--~~~L~GvDYs-~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 52 VDWLKDLIVISRVSKQADRVLDLGTG-NGHLLFQLAKEGF--QSKLTGVDYS-EKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHhhhhhhhhcccccceeeccCC-chHHHHHHHHhcC--CCCccccccC-HHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 344444444 4456699999997 8988777877532 3779999999 999999888776 7877799999998
Q ss_pred hhhhhhcCCCccEEE---------EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 103 QKLLMGDYRGADFVL---------IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 103 ~~~L~~~~~~~D~Vf---------iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+- ......||+|+ +-++...+...-|++.+.+. |+| ||++|.-...|
T Consensus 128 ~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l--l~~-~gifvItSCN~ 184 (227)
T KOG1271|consen 128 TDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL--LSP-GGIFVITSCNF 184 (227)
T ss_pred cCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc--cCC-CcEEEEEecCc
Confidence 652 12235677665 32222123445567777777 765 99988876665
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2.6e-05 Score=65.01 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=67.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
+.++++.++||||| +|+.+..|++...+ .....|+|+| |++++..++..+.-..+++.+..|....|.. ++.|++
T Consensus 40 ~~~~~~i~lEIG~G-SGvvstfL~~~i~~-~~~~latDiN-p~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 40 KGHNPEICLEIGCG-SGVVSTFLASVIGP-QALYLATDIN-PEALEATLETARCNRVHIDVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred hhcCceeEEEecCC-cchHHHHHHHhcCC-CceEEEecCC-HHHHHHHHHHHHhcCCccceeehhHHhhhcc--CCccEE
Confidence 34558999999997 89999999998875 7788999999 9999998888873235699999999998855 889999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
+...+-
T Consensus 115 vfNPPY 120 (209)
T KOG3191|consen 115 VFNPPY 120 (209)
T ss_pred EECCCc
Confidence 877654
No 191
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.07 E-value=1.8e-05 Score=67.58 Aligned_cols=102 Identities=22% Similarity=0.178 Sum_probs=74.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.-.+.++|||||. +.|..++.++++-| +-+++-.|. |+.++.+++ .++|+++.||..+.+| . +|++
T Consensus 97 d~~~~~~vvDvGG-G~G~~~~~l~~~~P--~l~~~v~Dl--p~v~~~~~~-----~~rv~~~~gd~f~~~P---~-~D~~ 162 (241)
T PF00891_consen 97 DFSGFKTVVDVGG-GSGHFAIALARAYP--NLRATVFDL--PEVIEQAKE-----ADRVEFVPGDFFDPLP---V-ADVY 162 (241)
T ss_dssp TTTTSSEEEEET--TTSHHHHHHHHHST--TSEEEEEE---HHHHCCHHH-----TTTEEEEES-TTTCCS---S-ESEE
T ss_pred cccCccEEEeccC-cchHHHHHHHHHCC--CCcceeecc--Hhhhhcccc-----ccccccccccHHhhhc---c-ccce
Confidence 3446689999995 59999999998876 468888888 788888888 4899999999986554 3 9999
Q ss_pred EEcCCCC---CccHHHHHHHHHhhcCCCCC--CEEEEEecCCC
Q 042616 117 LIDCNID---IDGHKNVFRAAKESVMHGSG--AGVIVGYNALP 154 (220)
Q Consensus 117 fiD~~k~---~~~y~~~l~~l~~~~~L~~~--Ggviv~dNv~~ 154 (220)
++-.-.+ .++-..+|+.+... |+|. |-++|.|.++.
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~a--l~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAA--LKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHH--SEECTTEEEEEEEEEEC
T ss_pred eeehhhhhcchHHHHHHHHHHHHH--hCCCCCCeEEEEeeccC
Confidence 9844331 14557778999998 8763 45566665543
No 192
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.05 E-value=1.9e-05 Score=67.41 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=79.6
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHH--HHhc-------c---
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASK--KSLG-------R--- 90 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar--~~l~-------g--- 90 (220)
-..|..-+++..+ ...+..+||..||| .|+-.+|||.. |-+|++||.+ +.+++.|. .++. +
T Consensus 21 ~~~p~L~~~~~~l-~~~~~~rvLvPgCG-~g~D~~~La~~----G~~VvGvDls-~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 21 EPNPALVEYLDSL-ALKPGGRVLVPGCG-KGYDMLWLAEQ----GHDVVGVDLS-PTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp TSTHHHHHHHHHH-TTSTSEEEEETTTT-TSCHHHHHHHT----TEEEEEEES--HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCCHHHHHHHHhc-CCCCCCeEEEeCCC-ChHHHHHHHHC----CCeEEEEecC-HHHHHHHHHHhccCCCcccccceee
Confidence 4566667777773 45666799999997 99999999973 6799999999 99999873 2321 1
Q ss_pred -cCCcEEEEEcchhhhhhhcCCCccEEEEcCC----CCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 91 -YANCIEFVKGDAQKLLMGDYRGADFVLIDCN----IDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 91 -~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~----k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
-.++|++++||..++-+...++||+|+ |.. -+...=.+|.+.+..+ |+| ||.
T Consensus 94 ~~~~~i~~~~gDfF~l~~~~~g~fD~iy-Dr~~l~Alpp~~R~~Ya~~l~~l--l~p-~g~ 150 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPEDVGKFDLIY-DRTFLCALPPEMRERYAQQLASL--LKP-GGR 150 (218)
T ss_dssp ETTSSEEEEES-TTTGGGSCHHSEEEEE-ECSSTTTS-GGGHHHHHHHHHHC--EEE-EEE
T ss_pred ecCCceEEEEcccccCChhhcCCceEEE-EecccccCCHHHHHHHHHHHHHH--hCC-CCc
Confidence 134689999999886554346899997 211 1114457888999988 876 666
No 193
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.6e-05 Score=74.97 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHhhC---C-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEE
Q 042616 24 KEPDVGEFISALAAGN---N-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEF 97 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~---~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~ 97 (220)
.....++.|+..+..+ + .+.+||++|| +|.+++.||+. -++|+.||.+ |+.++.|+.|.+ |. .|.+|
T Consensus 363 ~Nt~~aevLys~i~e~~~l~~~k~llDv~CG-TG~iglala~~----~~~ViGvEi~-~~aV~dA~~nA~~Ngi-sNa~F 435 (534)
T KOG2187|consen 363 TNTSAAEVLYSTIGEWAGLPADKTLLDVCCG-TGTIGLALARG----VKRVIGVEIS-PDAVEDAEKNAQINGI-SNATF 435 (534)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCcEEEEEeec-CCceehhhhcc----ccceeeeecC-hhhcchhhhcchhcCc-cceee
Confidence 4455677777777643 2 3667999996 99999988864 5899999999 999999999997 67 68999
Q ss_pred EEcchhhhhhhcCC----Ccc-EEEEcCCCCCccHHHHHHHHHhh
Q 042616 98 VKGDAQKLLMGDYR----GAD-FVLIDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 98 v~gda~~~L~~~~~----~~D-~VfiD~~k~~~~y~~~l~~l~~~ 137 (220)
++|-|++.++.+.. .-+ .+++|.++ .+....++.++...
T Consensus 436 i~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~ 479 (534)
T KOG2187|consen 436 IVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAY 479 (534)
T ss_pred eecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhc
Confidence 99999999887742 446 88999987 46667778887776
No 194
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.04 E-value=2.2e-05 Score=69.50 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=93.0
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~ 99 (220)
..+......+...+....+...|||.+++ .|-=|..||+.+.. .|+|++.|.+ +.++...+.+++ |. .++.++.
T Consensus 67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAa-pGgKt~~la~~~~~-~g~i~A~D~~-~~Rl~~l~~~~~r~g~-~~v~~~~ 142 (283)
T PF01189_consen 67 FYVQDESSQLVALALDPQPGERVLDMCAA-PGGKTTHLAELMGN-KGEIVANDIS-PKRLKRLKENLKRLGV-FNVIVIN 142 (283)
T ss_dssp EEEHHHHHHHHHHHHTTTTTSEEEESSCT-TSHHHHHHHHHTTT-TSEEEEEESS-HHHHHHHHHHHHHTT--SSEEEEE
T ss_pred EEecccccccccccccccccccccccccC-CCCceeeeeecccc-hhHHHHhccC-HHHHHHHHHHHHhcCC-ceEEEEe
Confidence 34444555666666677788999999985 88888999988875 7999999999 999999999998 65 6788888
Q ss_pred cchhhhhhhcC-CCccEEEEcCCCCC-------c----------------cHHHHHHHHHhhcCC----CCCCEEEEEec
Q 042616 100 GDAQKLLMGDY-RGADFVLIDCNIDI-------D----------------GHKNVFRAAKESVMH----GSGAGVIVGYN 151 (220)
Q Consensus 100 gda~~~L~~~~-~~~D~VfiD~~k~~-------~----------------~y~~~l~~l~~~~~L----~~~Ggviv~dN 151 (220)
.|+....+... ..||.|++|++-.. . .-.+.|+.+.+. + +| ||.+|.--
T Consensus 143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~--~~~~~k~-gG~lvYsT 219 (283)
T PF01189_consen 143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL--LNIDFKP-GGRLVYST 219 (283)
T ss_dssp SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC--EHHHBEE-EEEEEEEE
T ss_pred eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh--hcccccC-CCeEEEEe
Confidence 99988765443 45999999987611 0 012345566666 7 76 88888764
Q ss_pred CC
Q 042616 152 AL 153 (220)
Q Consensus 152 v~ 153 (220)
..
T Consensus 220 CS 221 (283)
T PF01189_consen 220 CS 221 (283)
T ss_dssp SH
T ss_pred cc
Confidence 43
No 195
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.02 E-value=2.7e-05 Score=68.54 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=76.1
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc--cCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR--YANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g--~~~~Ve~v~g 100 (220)
...|.+..-|..=|...++..|||+|-| +|..|..|.++ +.+|+|+|.| |.++....+.++| .+.+.++++|
T Consensus 41 lkNp~v~~~I~~ka~~k~tD~VLEvGPG-TGnLT~~lLe~----~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~g 114 (315)
T KOG0820|consen 41 LKNPLVIDQIVEKADLKPTDVVLEVGPG-TGNLTVKLLEA----GKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHG 114 (315)
T ss_pred hcCHHHHHHHHhccCCCCCCEEEEeCCC-CCHHHHHHHHh----cCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEec
Confidence 5668888888888889999999999986 99999999987 6799999999 9999888888874 4588999999
Q ss_pred chhhhhhhcCCCccEEEEcCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k 122 (220)
|....- ...||.++-.-+-
T Consensus 115 D~lK~d---~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 115 DFLKTD---LPRFDGCVSNLPY 133 (315)
T ss_pred ccccCC---CcccceeeccCCc
Confidence 987632 3568999866654
No 196
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.00 E-value=4.6e-05 Score=66.43 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=84.5
Q ss_pred CCChhHHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHc---CCCCcEEEEEeCCc------------------
Q 042616 23 GKEPDVGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAA---RQTGGRVVCILSGV------------------ 77 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~---~~~~grV~tIE~d~------------------ 77 (220)
++.+.-..-|..++.. .-+..|+|.|+. -|.+++.++..+ ..++.+++..|.=+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~-rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~ 131 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVW-RGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEF 131 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--T-TSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeC-CCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhh
Confidence 4555555556555553 347889999994 666666554433 22356788877421
Q ss_pred -------hhHHHHHHHHhc--cc-CCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 78 -------IGDIDASKKSLG--RY-ANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 78 -------~~~~~~Ar~~l~--g~-~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
....+..++++. ++ .++++++.|...+.||.. ...+-++.||++. ++.....|+.+.+. |.| ||+
T Consensus 132 ~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-YesT~~aLe~lypr--l~~-GGi 207 (248)
T PF05711_consen 132 HEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-YESTKDALEFLYPR--LSP-GGI 207 (248)
T ss_dssp CGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-HHHHHHHHHHHGGG--EEE-EEE
T ss_pred hhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccc-hHHHHHHHHHHHhh--cCC-CeE
Confidence 013456777776 43 578999999999999875 3679999999998 34447778888998 764 999
Q ss_pred EEEecCCCCC------Ccc---ceEEEeeecCC
Q 042616 147 IVGYNALPKG------SWR---GYKTHFLPIGE 170 (220)
Q Consensus 147 iv~dNv~~~g------~~~---~~~s~~lPig~ 170 (220)
||+|+-..+| .|+ ++..-+.+|..
T Consensus 208 Ii~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~ 240 (248)
T PF05711_consen 208 IIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDW 240 (248)
T ss_dssp EEESSTTTHHHHHHHHHHHHHTT--S--EE-SS
T ss_pred EEEeCCCChHHHHHHHHHHHHcCCCCccEEecC
Confidence 9999977755 233 55555666644
No 197
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.98 E-value=6.5e-05 Score=64.62 Aligned_cols=119 Identities=14% Similarity=0.039 Sum_probs=79.8
Q ss_pred CChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc------------cc
Q 042616 24 KEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG------------RY 91 (220)
Q Consensus 24 ~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~------------g~ 91 (220)
..|-..+++..+.. .+..+||..||| -|.-.+|||.. |-+|++||.+ +.+++.+.+... ..
T Consensus 28 pnp~L~~~~~~l~~-~~~~rvLvPgCG-kg~D~~~LA~~----G~~V~GvDlS-~~Ai~~~~~e~~~~~~~~~~~~~~~~ 100 (226)
T PRK13256 28 PNEFLVKHFSKLNI-NDSSVCLIPMCG-CSIDMLFFLSK----GVKVIGIELS-EKAVLSFFSQNTINYEVIHGNDYKLY 100 (226)
T ss_pred CCHHHHHHHHhcCC-CCCCeEEEeCCC-ChHHHHHHHhC----CCcEEEEecC-HHHHHHHHHHcCCCcceeccccccee
Confidence 34444455554432 245799999997 99999999973 6789999999 999988755210 01
Q ss_pred -CCcEEEEEcchhhhhh--hcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 92 -ANCIEFVKGDAQKLLM--GDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 92 -~~~Ve~v~gda~~~L~--~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...|++++||..++-+ ...++||+|+-=+-- +...=.+|.+.+... |+| ||.++.-..
T Consensus 101 ~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~l--L~p-gg~llll~~ 164 (226)
T PRK13256 101 KGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEV--CSN-NTQILLLVM 164 (226)
T ss_pred ccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHH--hCC-CcEEEEEEE
Confidence 2469999999988532 224679997621111 113346788888887 766 777665543
No 198
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2.1e-05 Score=63.50 Aligned_cols=97 Identities=7% Similarity=0.052 Sum_probs=76.3
Q ss_pred CCCCCChhHH-HHHHHHHhhCC---CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE
Q 042616 20 GKRGKEPDVG-EFISALAAGNN---AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI 95 (220)
Q Consensus 20 ~~~~~~p~~~-~~L~~La~~~~---a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V 95 (220)
.|....|+.| ..++.+-.... .+.+.++||| +|..+ ++.+++. ...|+++|+| |++++.+++|.+.++-++
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcg-cGmLs--~a~sm~~-~e~vlGfDId-peALEIf~rNaeEfEvqi 98 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCG-CGMLS--IAFSMPK-NESVLGFDID-PEALEIFTRNAEEFEVQI 98 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCc-hhhhH--HHhhcCC-CceEEeeecC-HHHHHHHhhchHHhhhhh
Confidence 4567778775 56666655543 7999999996 89887 4555554 6789999999 999999999998554568
Q ss_pred EEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 96 EFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 96 e~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
++++.|..+..+. ..-||-+++|.+-
T Consensus 99 dlLqcdildle~~-~g~fDtaviNppF 124 (185)
T KOG3420|consen 99 DLLQCDILDLELK-GGIFDTAVINPPF 124 (185)
T ss_pred heeeeeccchhcc-CCeEeeEEecCCC
Confidence 9999999887655 4779999999876
No 199
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.95 E-value=3.1e-05 Score=70.01 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=63.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh-hhhcCCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL-LMGDYRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~-L~~~~~~~D 114 (220)
..+.+.|||+||| +|..+++-|+|. ..+|++||.+ +.++.|++.+. ++++.|+++.|..+++ || .+..|
T Consensus 58 lf~dK~VlDVGcG-tGILS~F~akAG---A~~V~aVe~S--~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCG-TGILSMFAAKAG---ARKVYAVEAS--SIADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVD 129 (346)
T ss_pred hcCCCEEEEcCCC-ccHHHHHHHHhC---cceEEEEech--HHHHHHHHHHHhcCccceEEEeecceEEEecC--cccee
Confidence 5678999999997 999999999985 3599999998 77799999887 7888899999999886 33 47899
Q ss_pred EEEEcC
Q 042616 115 FVLIDC 120 (220)
Q Consensus 115 ~VfiD~ 120 (220)
.|+-..
T Consensus 130 iIvSEW 135 (346)
T KOG1499|consen 130 IIVSEW 135 (346)
T ss_pred EEeehh
Confidence 998554
No 200
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.88 E-value=0.00011 Score=65.79 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=68.1
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~ 108 (220)
-+.|..| ...+...+||. |.|.|-=|..|+.+++ .|+|+++|.| +.+++.|++.++.+.+++++++++..++...
T Consensus 10 ~Evl~~L-~~~~ggiyVD~-TlG~GGHS~~iL~~l~--~g~vigiD~D-~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 10 DEVVEGL-NIKPDGIYIDC-TLGFGGHSKAILEQLG--TGRLIGIDRD-PQAIAFAKERLSDFEGRVVLIHDNFANFFEH 84 (305)
T ss_pred HHHHHhc-CcCCCCEEEEe-CCCChHHHHHHHHhCC--CCEEEEEcCC-HHHHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence 3555555 34556788994 5336667777887775 3999999999 9999999999886667899999998876533
Q ss_pred c----CCCccEEEEcCCC
Q 042616 109 D----YRGADFVLIDCNI 122 (220)
Q Consensus 109 ~----~~~~D~VfiD~~k 122 (220)
+ ..++|.|++|-..
T Consensus 85 l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 85 LDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHhcCCCcccEEEEeccC
Confidence 3 2579999999877
No 201
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.84 E-value=4.4e-05 Score=65.14 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=78.7
Q ss_pred HHHHHHHHhh-----CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcch
Q 042616 29 GEFISALAAG-----NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDA 102 (220)
Q Consensus 29 ~~~L~~La~~-----~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda 102 (220)
-.||..|... .+..+.||.|+| +|-.|-.|.. +.-.+|.-||+. +.+++.|++.+. +.....++.+-..
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAG-IGRVTk~lLl---~~f~~VDlVEp~-~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAG-IGRVTKGLLL---PVFDEVDLVEPV-EKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-T-TTHHHHHTCC---CC-SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHhhcccCCCCcceEEecccc-cchhHHHHHH---HhcCEeEEeccC-HHHHHHHHHHhcccCCCcceEEecCH
Confidence 3566655444 356899999996 9999986653 236799999999 999999999987 3334468888888
Q ss_pred hhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEE-ecCCCCC
Q 042616 103 QKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVG-YNALPKG 156 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~-dNv~~~g 156 (220)
+++-|. ...||+|.+=.-. .-.+..++|+.++.. |+| ||+||+ +|+...+
T Consensus 114 Q~f~P~-~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~--L~~-~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 114 QDFTPE-EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQA--LKP-NGVIVVKENVSSSG 167 (218)
T ss_dssp GG-----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHH--EEE-EEEEEEEEEEESSS
T ss_pred hhccCC-CCcEeEEEehHhhccCCHHHHHHHHHHHHHh--CcC-CcEEEEEecCCCCC
Confidence 998876 5689999875432 114678899999999 987 566554 5665544
No 202
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.82 E-value=0.00022 Score=58.76 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL 105 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~ 105 (220)
+-.|+.+...+.-..+.-|||+|.| +|..|-++.+-..+ ...+++||.+ ++++..-.+.+. -+.+++|||.+.
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPG-TGV~TkaIL~~gv~-~~~L~~iE~~-~dF~~~L~~~~p----~~~ii~gda~~l 106 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPG-TGVITKAILSRGVR-PESLTAIEYS-PDFVCHLNQLYP----GVNIINGDAFDL 106 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCC-ccHhHHHHHhcCCC-ccceEEEEeC-HHHHHHHHHhCC----CccccccchhhH
Confidence 3446666666666777899999996 99999986654443 6889999999 999988777764 355999999764
Q ss_pred h---hhc-CCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 106 L---MGD-YRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 106 L---~~~-~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
- ... ...||.|+-.-+..+ ..-..+++.+... |.+ ||.+|-
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~r--l~~-gg~lvq 154 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYR--LPA-GGPLVQ 154 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHh--cCC-CCeEEE
Confidence 3 221 346999987766511 2336778888888 765 665543
No 203
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.82 E-value=0.00031 Score=64.35 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHh--c----c-c-CCcEEEEEcchhhhhhhcC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSL--G----R-Y-ANCIEFVKGDAQKLLMGDY 110 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l--~----g-~-~~~Ve~v~gda~~~L~~~~ 110 (220)
.+++++|-+|. +-|...--|.+ -|+ -++++-||.| |++++.++.+. . + + ..+++++..||.+.+....
T Consensus 288 ~~a~~vLvlGG-GDGLAlRellk-yP~-~~qI~lVdLD-P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGG-GDGLALRELLK-YPQ-VEQITLVDLD-PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred cccceEEEEcC-CchHHHHHHHh-CCC-cceEEEEecC-HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence 57899999995 47765544554 233 6899999999 99999999543 2 2 2 3569999999999998766
Q ss_pred CCccEEEEcCCCCC-----ccH-HHHHHHHHhhcCCCCCCEEEEEecCC--C-CC-Ccc--------ceE----EEeee-
Q 042616 111 RGADFVLIDCNIDI-----DGH-KNVFRAAKESVMHGSGAGVIVGYNAL--P-KG-SWR--------GYK----THFLP- 167 (220)
Q Consensus 111 ~~~D~VfiD~~k~~-----~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~--~-~g-~~~--------~~~----s~~lP- 167 (220)
+.||+|++|-+.++ +.| .+.+..+.++ |++ +|++|+.--. + +. -|+ ++. .+.+|
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~--l~e-~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPT 440 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRH--LAE-TGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPT 440 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHh--cCc-CceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCc
Confidence 79999999976522 345 6778888888 875 8887775332 2 22 354 221 23344
Q ss_pred cCC-cEEEEEEee
Q 042616 168 IGE-GLLVTRIGE 179 (220)
Q Consensus 168 ig~-Gl~v~~~~~ 179 (220)
+|+ |+.++....
T Consensus 441 FGeWGf~l~~~~~ 453 (508)
T COG4262 441 FGEWGFILAAPGD 453 (508)
T ss_pred ccccceeeccccc
Confidence 566 888887753
No 204
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.81 E-value=0.0008 Score=57.69 Aligned_cols=143 Identities=11% Similarity=-0.010 Sum_probs=96.7
Q ss_pred CCChhhhHHHHHHH-----Hhc-CCCCCCh---hHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEE
Q 042616 3 SWSSENATKAYLQA-----LKM-GKRGKEP---DVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCI 73 (220)
Q Consensus 3 ~w~~e~a~~aY~~~-----l~~-~~~~~~p---~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tI 73 (220)
.|+.+.+.+.|+.+ ++. ++..+.. ...+.++.. ...+..+||++|= +.|...-.+-++ ++ -+.+-|
T Consensus 56 ~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A~a-i~tkggrvLnVGF-GMgIidT~iQe~-~p--~~H~Ii 130 (271)
T KOG1709|consen 56 ADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALAEA-ISTKGGRVLNVGF-GMGIIDTFIQEA-PP--DEHWII 130 (271)
T ss_pred ccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHHHH-HhhCCceEEEecc-chHHHHHHHhhc-CC--cceEEE
Confidence 46667777776555 222 2222221 122223222 2378899999995 478776666554 33 588889
Q ss_pred eCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHH---HHHHHHHhhcCCCCCCEEEEE
Q 042616 74 LSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHK---NVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 74 E~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~---~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|.+ |..++.-|..-=.-.++|-++.|--++.++.+ .+.||=|+-|.-. +.|. +..+.+.++ |+| +|++-.
T Consensus 131 E~h-p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~--e~yEdl~~~hqh~~rL--LkP-~gv~Sy 204 (271)
T KOG1709|consen 131 EAH-PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS--ELYEDLRHFHQHVVRL--LKP-EGVFSY 204 (271)
T ss_pred ecC-HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh--hHHHHHHHHHHHHhhh--cCC-CceEEE
Confidence 999 99887766653234578999999999999887 4679999999986 5554 456667777 876 898888
Q ss_pred ecCCCCC
Q 042616 150 YNALPKG 156 (220)
Q Consensus 150 dNv~~~g 156 (220)
=|-+..+
T Consensus 205 fNg~~~~ 211 (271)
T KOG1709|consen 205 FNGLGAD 211 (271)
T ss_pred ecCcccc
Confidence 7777644
No 205
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.78 E-value=7.4e-05 Score=65.16 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCC-CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEE
Q 042616 20 GKR-GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFV 98 (220)
Q Consensus 20 ~~~-~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v 98 (220)
+|. .+.+..++-+...+...+...|||||.| .|..|-.|+.. +.+|++||.| +..++..++.+. ...+++++
T Consensus 9 gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG-~G~lT~~L~~~----~~~v~~vE~d-~~~~~~L~~~~~-~~~~~~vi 81 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALDLSEGDTVLEIGPG-PGALTRELLKR----GKRVIAVEID-PDLAKHLKERFA-SNPNVEVI 81 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHTCGTTSEEEEESST-TSCCHHHHHHH----SSEEEEEESS-HHHHHHHHHHCT-TCSSEEEE
T ss_pred CcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCC-CccchhhHhcc----cCcceeecCc-HhHHHHHHHHhh-hcccceee
Confidence 454 4578888888888888889999999996 99999999986 4799999999 999998888776 23689999
Q ss_pred Ecchhhhhhhc--CCCccEEEEcCCCCCccHHHHHHHHHh
Q 042616 99 KGDAQKLLMGD--YRGADFVLIDCNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 99 ~gda~~~L~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~ 136 (220)
++|+.++-... ......||-.-+- .....++..+..
T Consensus 82 ~~D~l~~~~~~~~~~~~~~vv~NlPy--~is~~il~~ll~ 119 (262)
T PF00398_consen 82 NGDFLKWDLYDLLKNQPLLVVGNLPY--NISSPILRKLLE 119 (262)
T ss_dssp ES-TTTSCGGGHCSSSEEEEEEEETG--TGHHHHHHHHHH
T ss_pred ecchhccccHHhhcCCceEEEEEecc--cchHHHHHHHhh
Confidence 99998753221 1233344433332 444566666665
No 206
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.77 E-value=0.0002 Score=60.12 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vf 117 (220)
.+..+|||+||| .|..-.+|... .+-+.++||.| ++.+..+.+ .-+.++++|+.+.|+.. .++||+|+
T Consensus 12 ~pgsrVLDLGCG-dG~LL~~L~~~---k~v~g~GvEid-~~~v~~cv~------rGv~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCG-DGELLAYLKDE---KQVDGYGVEID-PDNVAACVA------RGVSVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCC-chHHHHHHHHh---cCCeEEEEecC-HHHHHHHHH------cCCCEEECCHHHhHhhCCCCCccEEe
Confidence 346899999997 89876666653 26789999999 877655544 23679999999988755 47899999
Q ss_pred EcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+--.-.. .+...+++.+.+.| +-++|-+.|-
T Consensus 81 lsqtLQ~~~~P~~vL~EmlRVg----r~~IVsFPNF 112 (193)
T PF07021_consen 81 LSQTLQAVRRPDEVLEEMLRVG----RRAIVSFPNF 112 (193)
T ss_pred hHhHHHhHhHHHHHHHHHHHhc----CeEEEEecCh
Confidence 8765511 23466777777762 4788888887
No 207
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.75 E-value=0.00016 Score=65.66 Aligned_cols=75 Identities=9% Similarity=0.128 Sum_probs=62.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
..+.+.|||+|+| +|..+...|.|. ..+|++||.+ +++++||+.++ .+.++|.++.|..+++ ++.++.|+
T Consensus 175 DF~~kiVlDVGaG-SGILS~FAaqAG---A~~vYAvEAS--~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eLPEk~Dv 246 (517)
T KOG1500|consen 175 DFQDKIVLDVGAG-SGILSFFAAQAG---AKKVYAVEAS--EMAQYARKLVASNNLADRITVIPGKIEDI--ELPEKVDV 246 (517)
T ss_pred ccCCcEEEEecCC-ccHHHHHHHHhC---cceEEEEehh--HHHHHHHHHHhcCCccceEEEccCccccc--cCchhccE
Confidence 3456889999997 899998888774 3689999998 99999999998 5689999999999985 34578999
Q ss_pred EEEcC
Q 042616 116 VLIDC 120 (220)
Q Consensus 116 VfiD~ 120 (220)
|+-..
T Consensus 247 iISEP 251 (517)
T KOG1500|consen 247 IISEP 251 (517)
T ss_pred EEecc
Confidence 88654
No 208
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.74 E-value=0.0004 Score=61.78 Aligned_cols=126 Identities=9% Similarity=0.039 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~g 100 (220)
.+.....+-+..|.+..+|-+||||-|| .|---+-.....+...-.|.-.|.+ +..++..++.++ |+.+.++|.++
T Consensus 118 ~l~~~i~~ai~~L~~~g~pvrIlDIAaG-~GRYvlDal~~~~~~~~~i~LrDys-~~Nv~~g~~li~~~gL~~i~~f~~~ 195 (311)
T PF12147_consen 118 HLEELIRQAIARLREQGRPVRILDIAAG-HGRYVLDALEKHPERPDSILLRDYS-PINVEKGRALIAERGLEDIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccC-CcHHHHHHHHhCCCCCceEEEEeCC-HHHHHHHHHHHHHcCCccceEEEec
Confidence 3444445555666667789999999886 6765554333333323588999999 999999999997 89777899999
Q ss_pred chhhh--hhhcCCCccEEEEcCCCCCccH------HHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 DAQKL--LMGDYRGADFVLIDCNIDIDGH------KNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 da~~~--L~~~~~~~D~VfiD~~k~~~~y------~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
||.+. +..+....+++++-+-- +.+ .+-+.-+... +. +||++|.-|--||
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~--ElF~Dn~lv~~sl~gl~~a--l~-pgG~lIyTgQPwH 253 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLY--ELFPDNDLVRRSLAGLARA--LE-PGGYLIYTGQPWH 253 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecch--hhCCcHHHHHHHHHHHHHH--hC-CCcEEEEcCCCCC
Confidence 99764 44445668999987765 333 3345666666 65 5999998876554
No 209
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.71 E-value=0.0002 Score=57.85 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=59.0
Q ss_pred EEEeCCchhHHHHHHHHhc--c--cCCcEEEEEcchhhhhhhcCCCccEEEEcCCCC-CccHHHHHHHHHhhcCCCCCCE
Q 042616 71 VCILSGVIGDIDASKKSLG--R--YANCIEFVKGDAQKLLMGDYRGADFVLIDCNID-IDGHKNVFRAAKESVMHGSGAG 145 (220)
Q Consensus 71 ~tIE~d~~~~~~~Ar~~l~--g--~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~-~~~y~~~l~~l~~~~~L~~~Gg 145 (220)
+++|++ +++++.|++..+ . ...+|+++++|+.+ +|...++||+|++....+ -.+....++.+.+. |+| ||
T Consensus 1 ~GvD~S-~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rv--Lkp-GG 75 (160)
T PLN02232 1 MGLDFS-SEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRV--LKP-GS 75 (160)
T ss_pred CeEcCC-HHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEecchhhcCCCHHHHHHHHHHH--cCc-Ce
Confidence 479999 999999987654 2 23579999999987 454356899999876441 14678889999998 887 77
Q ss_pred EEEEecCCC
Q 042616 146 VIVGYNALP 154 (220)
Q Consensus 146 viv~dNv~~ 154 (220)
.+++.+...
T Consensus 76 ~l~i~d~~~ 84 (160)
T PLN02232 76 RVSILDFNK 84 (160)
T ss_pred EEEEEECCC
Confidence 776655543
No 210
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.69 E-value=0.00011 Score=57.32 Aligned_cols=55 Identities=7% Similarity=0.131 Sum_probs=44.4
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
.+||+||+ .|+.+++++...+ .++++++|++ |..++.++++++ ++ .++++++...
T Consensus 1 ~vlDiGa~-~G~~~~~~~~~~~--~~~v~~~E~~-~~~~~~l~~~~~~n~~-~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGAN-IGDTSLYFARKGA--EGRVIAFEPL-PDAYEILEENVKLNNL-PNVVLLNAAV 57 (143)
T ss_pred CEEEccCC-ccHHHHHHHHhCC--CCEEEEEecC-HHHHHHHHHHHHHcCC-CcEEEEEeee
Confidence 37999996 9999999998754 4699999999 999999999986 44 3466666443
No 211
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=8.3e-05 Score=64.41 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh-hhhhhc--CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ-KLLMGD--YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~-~~L~~~--~~~~D~ 115 (220)
..+..||||||| +|-+...|.+..+.++-+|+|.|.+ |.+++..+++-.-...++.--+-|.. +.++.- .+++|+
T Consensus 70 ~~~~~ilEvGCG-vGNtvfPll~~~~n~~l~v~acDfs-p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 70 KSAETILEVGCG-VGNTVFPLLKTSPNNRLKVYACDFS-PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred cChhhheeeccC-CCcccchhhhcCCCCCeEEEEcCCC-hHHHHHHHhccccchhhhcccceeccchhccCCCCcCccce
Confidence 345689999997 9998888888776656899999999 99999999887622244433333321 112111 367886
Q ss_pred E---EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 V---LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 V---fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
| |+=.....+.....++.+.+. |+| ||.|++-
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~l--lKP-GG~llfr 182 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTL--LKP-GGSLLFR 182 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHH--hCC-CcEEEEe
Confidence 5 322222236788899999998 987 6666654
No 212
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.64 E-value=0.00048 Score=54.51 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHHHHHHHhh----CCCCEEEEEcCCchHHHHHHHHHHcC--CCCcEEEEEeCCchhHHHHHHHHhc--c--cCCcEEE
Q 042616 28 VGEFISALAAG----NNAQLIVMACSSIAVSRTLALVAAAR--QTGGRVVCILSGVIGDIDASKKSLG--R--YANCIEF 97 (220)
Q Consensus 28 ~~~~L~~La~~----~~a~~ILEIGtg~~G~sTl~LA~A~~--~~~grV~tIE~d~~~~~~~Ar~~l~--g--~~~~Ve~ 97 (220)
.++++..++.. .+...|+|+|+| -||.+..|+..++ ..+-+|++||.+ ++..+.|.+..+ + +..++++
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~ 86 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCN-ESLVESAQKRAQKLGSDLEKRLSF 86 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECC-cHHHHHHHHHHHHhcchhhccchh
Confidence 46677777666 889999999986 9999999998432 136899999999 999988888776 3 4456788
Q ss_pred EEcchhhhh
Q 042616 98 VKGDAQKLL 106 (220)
Q Consensus 98 v~gda~~~L 106 (220)
..++..+..
T Consensus 87 ~~~~~~~~~ 95 (141)
T PF13679_consen 87 IQGDIADES 95 (141)
T ss_pred hccchhhhc
Confidence 887766543
No 213
>PHA01634 hypothetical protein
Probab=97.62 E-value=0.00018 Score=56.83 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.+.|++||++ +|.|+|+++..- ..+|+++|++ +...+..+++++ ..=++..... ..+...++||..
T Consensus 27 vk~KtV~dIGA~-iGdSaiYF~l~G---AK~Vva~E~~-~kl~k~~een~k~nnI~DK~v~~~-----eW~~~Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGAD-CGSSALYFLLRG---ASFVVQYEKE-EKLRKKWEEVCAYFNICDKAVMKG-----EWNGEYEDVDIF 96 (156)
T ss_pred ecCCEEEEecCC-ccchhhHHhhcC---ccEEEEeccC-HHHHHHHHHHhhhheeeeceeecc-----cccccCCCcceE
Confidence 356999999985 999999988752 3589999999 999999999887 2213322222 233446899999
Q ss_pred EEcCCC
Q 042616 117 LIDCNI 122 (220)
Q Consensus 117 fiD~~k 122 (220)
.+||.-
T Consensus 97 ~iDCeG 102 (156)
T PHA01634 97 VMDCEG 102 (156)
T ss_pred EEEccc
Confidence 999975
No 214
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.55 E-value=0.00093 Score=65.45 Aligned_cols=109 Identities=14% Similarity=0.004 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcC------C--CC--cEEEEEeCCchhH--------------HHHHHHHhc-----
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAAR------Q--TG--GRVVCILSGVIGD--------------IDASKKSLG----- 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~------~--~~--grV~tIE~d~~~~--------------~~~Ar~~l~----- 89 (220)
.+.-+|+|+|= |+|+.++.+.++.. + .. =+++++|.+ |-. .+.+++.++
T Consensus 56 ~~~~~i~e~gf-G~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~-p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (662)
T PRK01747 56 RRRFVIAETGF-GTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKF-PLTRADLARAHQHWPELAPLAEQLQAQWPLL 133 (662)
T ss_pred CCcEEEEecCc-chHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECC-CCCHHHHHHHHhhCcccHHHHHHHHHhCCcc
Confidence 34468999995 59999998776661 1 11 267999987 522 222222221
Q ss_pred --cc------CC--cEEEEEcchhhhhhhcCCCccEEEEcCCC--CCcc--HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 90 --RY------AN--CIEFVKGDAQKLLMGDYRGADFVLIDCNI--DIDG--HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 90 --g~------~~--~Ve~v~gda~~~L~~~~~~~D~VfiD~~k--~~~~--y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+ .+ ++++..||+.+.++++...+|.+|+|+-. .+.+ -.++|..+.++ +++ ||+++.+-+
T Consensus 134 ~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~--~~~-~~~~~t~t~ 207 (662)
T PRK01747 134 LPGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARL--ARP-GATLATFTS 207 (662)
T ss_pred CCCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHH--hCC-CCEEEEeeh
Confidence 11 12 35688899999998876779999999633 1222 27889999998 765 999998743
No 215
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.53 E-value=0.0011 Score=63.20 Aligned_cols=102 Identities=8% Similarity=-0.002 Sum_probs=73.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D 114 (220)
..+...+|||||| .|-+++.+|..-| +-.+++||.. ...+..|.+... ++ .|+.++.+|+..+...+ .+++|
T Consensus 345 ~~~~p~~lEIG~G-~G~~~~~~A~~~p--~~~~iGiE~~-~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 345 NEKRKVFLEIGFG-MGEHFINQAKMNP--DALFIGVEVY-LNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCCCceEEEECCC-chHHHHHHHHhCC--CCCEEEEEee-HHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCccccc
Confidence 3456789999997 8999999998765 5789999999 666655555443 66 68999999987655333 25688
Q ss_pred EEEEc---CCC------CCccHHHHHHHHHhhcCCCCCCEEE
Q 042616 115 FVLID---CNI------DIDGHKNVFRAAKESVMHGSGAGVI 147 (220)
Q Consensus 115 ~VfiD---~~k------~~~~y~~~l~~l~~~~~L~~~Ggvi 147 (220)
-|+|- ++. ++--....++.+.+. |+| ||.|
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~--Lk~-gG~i 458 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDK--LKD-NGNL 458 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHh--cCC-CCEE
Confidence 88775 431 112337788899988 876 6654
No 216
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.49 E-value=2.8e-05 Score=67.07 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.++...++.|..+..+ +-+++||+||| ||.+...|-. ...+++.||++ +.+++.|.+. ++ .=++.++|+
T Consensus 109 ~vP~~l~emI~~~~~g-~F~~~lDLGCG-TGL~G~~lR~----~a~~ltGvDiS-~nMl~kA~eK--g~--YD~L~~Aea 177 (287)
T COG4976 109 SVPELLAEMIGKADLG-PFRRMLDLGCG-TGLTGEALRD----MADRLTGVDIS-ENMLAKAHEK--GL--YDTLYVAEA 177 (287)
T ss_pred ccHHHHHHHHHhccCC-ccceeeecccC-cCcccHhHHH----HHhhccCCchh-HHHHHHHHhc--cc--hHHHHHHHH
Confidence 4444455666555333 37899999997 9988876543 35699999999 9999887763 22 235677888
Q ss_pred hhhhhhc-CCCccEEEEcCCC-CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 103 QKLLMGD-YRGADFVLIDCNI-DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 103 ~~~L~~~-~~~~D~VfiD~~k-~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+++.. .++||+|.----. .-+....+|-.+..+ |.| ||++.+-
T Consensus 178 ~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~--L~~-gGlfaFS 224 (287)
T COG4976 178 VLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGL--LAP-GGLFAFS 224 (287)
T ss_pred HHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHh--cCC-CceEEEE
Confidence 8888644 5789999732111 114445666667777 765 9988774
No 217
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.48 E-value=0.00073 Score=57.28 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=70.1
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
|.||||- -||..++|.+.-. ..+++++|.+ +.-++.|+++++ ++.++|+++.||..+.++. .+..|.|+|-+=
T Consensus 1 vaDIGtD-HgyLpi~L~~~~~--~~~~ia~DI~-~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTD-HGYLPIYLLKNGK--APKAIAVDIN-PGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-S-TTHHHHHHHHTTS--EEEEEEEESS-HHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEEEEE
T ss_pred Cceeccc-hhHHHHHHHhcCC--CCEEEEEeCC-HHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEEecC
Confidence 6899994 8999999998532 4689999999 999999999998 8889999999999988854 234899998764
Q ss_pred CCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 122 IDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
- .....++++..... +.+..-+|+.-|.
T Consensus 76 G-G~lI~~ILe~~~~~--~~~~~~lILqP~~ 103 (205)
T PF04816_consen 76 G-GELIIEILEAGPEK--LSSAKRLILQPNT 103 (205)
T ss_dssp --HHHHHHHHHHTGGG--GTT--EEEEEESS
T ss_pred C-HHHHHHHHHhhHHH--hccCCeEEEeCCC
Confidence 4 13447777777665 4332346666654
No 218
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.46 E-value=0.00082 Score=66.56 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=70.2
Q ss_pred CChhHHHHHHHHHhh-CCCCEEEEEcCCchHHHHHHHHHHcC--------------------------------------
Q 042616 24 KEPDVGEFISALAAG-NNAQLIVMACSSIAVSRTLALVAAAR-------------------------------------- 64 (220)
Q Consensus 24 ~~p~~~~~L~~La~~-~~a~~ILEIGtg~~G~sTl~LA~A~~-------------------------------------- 64 (220)
+.+..|.-|-.++.- .+...++|-.|| +|...+-.|..+.
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CG-SGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCG-SGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCC-ccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 445555544455433 346789999997 7887775544211
Q ss_pred --CCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCC
Q 042616 65 --QTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNI 122 (220)
Q Consensus 65 --~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k 122 (220)
....+++++|.| +.+++.|++|+. |+.+.|++.++|+.++.+.. .+.+|+|+.+.+-
T Consensus 252 ~~~~~~~i~G~Did-~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 252 LAELPSKFYGSDID-PRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred ccccCceEEEEECC-HHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 112479999999 999999999997 88788999999998864321 2469999999764
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.44 E-value=0.0015 Score=55.37 Aligned_cols=120 Identities=11% Similarity=-0.003 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------cc-CCcEEE
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------RY-ANCIEF 97 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g~-~~~Ve~ 97 (220)
..+++. .+...+....+|||+| .|-..+..|.-. . ..+.++||.. +...+.|+.+.+ |. ..++++
T Consensus 31 ~~~il~-~~~l~~~dvF~DlGSG-~G~~v~~aal~~-~-~~~~~GIEi~-~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 31 VSKILD-ELNLTPDDVFYDLGSG-VGNVVFQAALQT-G-CKKSVGIEIL-PELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHH-HTT--TT-EEEEES-T-TSHHHHHHHHHH----SEEEEEE-S-HHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHH-HhCCCCCCEEEECCCC-CCHHHHHHHHHc-C-CcEEEEEEec-hHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 344443 3456667888999996 898766555332 2 5679999999 999988876553 22 256899
Q ss_pred EEcchhhh--hhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 98 VKGDAQKL--LMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 98 v~gda~~~--L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.+||..+. ...+....|+||++...=.+.....+...... ++ +|..||.---+.+
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~--lk-~G~~IIs~~~~~~ 162 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLE--LK-PGARIISTKPFCP 162 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTT--S--TT-EEEESS-SS-
T ss_pred eccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhc--CC-CCCEEEECCCcCC
Confidence 99997542 33323467999998765112222223333344 54 5999998544433
No 220
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.43 E-value=0.0008 Score=62.04 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=76.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCC-cEEEEEcchhhhhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYAN-CIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~-~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
+-+|||.=+ ++|.=++..+.-++. ..+|+.-|.| +++.+..++|++ ++.+ ++++.+.||..+|......||+|=
T Consensus 50 ~~~~lDala-asGvR~iRy~~E~~~-~~~v~~NDi~-~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALA-ASGVRGIRYAKELAG-VDKVTANDIS-PEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp -EEEEETT--TTSHHHHHHHHH-SS-ECEEEEEES--HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CceEEeccc-cccHHHHHHHHHcCC-CCEEEEecCC-HHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 448999654 589999998887553 5799999999 999999999987 7765 799999999999854457899999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||+- +....+++.+.+. ++ +||+|.+--+-
T Consensus 127 lDPf---GSp~pfldsA~~~--v~-~gGll~vTaTD 156 (377)
T PF02005_consen 127 LDPF---GSPAPFLDSALQA--VK-DGGLLCVTATD 156 (377)
T ss_dssp E--S---S--HHHHHHHHHH--EE-EEEEEEEEE--
T ss_pred eCCC---CCccHhHHHHHHH--hh-cCCEEEEeccc
Confidence 9986 4678899999998 76 59998876553
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.31 E-value=0.00086 Score=60.26 Aligned_cols=88 Identities=20% Similarity=0.321 Sum_probs=57.4
Q ss_pred HHHHHHHHhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--
Q 042616 29 GEFISALAAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL-- 105 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~-- 105 (220)
-|.+..|. ..+...+|| || |+-|. |..+.++++ +++|+++|.| +++++.|++.++...+++.+++++..++
T Consensus 10 ~Evl~~L~-~~~~g~~vD-~T~G~GGH-S~aiL~~~~--~~~li~~DrD-~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVD-CTFGGGGH-SKAILEKLP--NGRLIGIDRD-PEALERAKERLKKFDDRFIFIHGNFSNLDE 83 (310)
T ss_dssp HHHHHHHT---TT-EEEE-TT-TTSHH-HHHHHHT-T--T-EEEEEES--HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred HHHHHhhC-cCCCceEEe-ecCCcHHH-HHHHHHhCC--CCeEEEecCC-HHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence 34555553 556677888 56 43355 555555665 3999999999 9999999999986678999999987654
Q ss_pred -hhhc--CCCccEEEEcCCC
Q 042616 106 -LMGD--YRGADFVLIDCNI 122 (220)
Q Consensus 106 -L~~~--~~~~D~VfiD~~k 122 (220)
+... ...+|.|++|-..
T Consensus 84 ~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 84 YLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHccCCCccCEEEEcccc
Confidence 4333 2579999999887
No 222
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.28 E-value=0.0029 Score=57.54 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=67.6
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+...+.++|+-+|.|+.|-.++.+|.|+ +.+|++++.+ ++..+.|++.-. -.++.+.-.+.++.+.+.||+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~---ga~Via~~~~-~~K~e~a~~lGA-----d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM---GAEVIAITRS-EEKLELAKKLGA-----DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCC-hHHHHHHHHhCC-----cEEEEcCCchhhHHhHhhCcE
Confidence 3456679999999988999999999987 6899999999 999999998732 233332222222222234999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+.-... ..+..+++.+ ++.|.++++=+.
T Consensus 233 ii~tv~~--~~~~~~l~~l------~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVGP--ATLEPSLKAL------RRGGTLVLVGLP 261 (339)
T ss_pred EEECCCh--hhHHHHHHHH------hcCCEEEEECCC
Confidence 9877664 4545444444 444555555444
No 223
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.15 E-value=0.0011 Score=61.61 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=82.4
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~ 111 (220)
-.+..+..+|||.++ +.|-=|.++|.-+.. .|-|++-|.+ ..++...+.|+. |+ ++..+++.|..++-... .+
T Consensus 236 aL~Pq~gERIlDmcA-APGGKTt~IAalMkn-~G~I~AnD~n-~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 236 ALDPQPGERILDMCA-APGGKTTHIAALMKN-TGVIFANDSN-ENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG 311 (460)
T ss_pred ecCCCCCCeecchhc-CCCchHHHHHHHHcC-CceEEecccc-hHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc
Confidence 345667899999987 577788889976665 8999999999 999999999997 76 56778888887642122 34
Q ss_pred CccEEEEcCCCCC-------------------ccH----HHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDI-------------------DGH----KNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~-------------------~~y----~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+||-|++|++-.. ..| .+.|..+..+ +++ ||+||.--..
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l--v~~-GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL--VKA-GGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh--ccC-CcEEEEEeee
Confidence 7999999987611 122 2344555565 776 9999876544
No 224
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.13 E-value=0.00089 Score=57.88 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=48.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----cc------CCcEEEEEcchhhhhhhcCC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RY------ANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~------~~~Ve~v~gda~~~L~~~~~ 111 (220)
.+|||.=+| .|.=++-||.. |++|+++|.+ |-.+...+.-++ .. ..+|+++++|+.++|+....
T Consensus 77 ~~VLDaTaG-LG~Da~vlA~~----G~~V~~lErs-pvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAG-LGRDAFVLASL----GCKVTGLERS-PVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDN 150 (234)
T ss_dssp --EEETT-T-TSHHHHHHHHH----T--EEEEE---HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS
T ss_pred CEEEECCCc-chHHHHHHHcc----CCeEEEEECC-HHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCC
Confidence 389996444 89988888853 7899999999 998877776553 11 14799999999999974357
Q ss_pred CccEEEEcCCC
Q 042616 112 GADFVLIDCNI 122 (220)
Q Consensus 112 ~~D~VfiD~~k 122 (220)
+||+|++|+=-
T Consensus 151 s~DVVY~DPMF 161 (234)
T PF04445_consen 151 SFDVVYFDPMF 161 (234)
T ss_dssp --SEEEE--S-
T ss_pred CCCEEEECCCC
Confidence 99999999743
No 225
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.13 E-value=0.0027 Score=54.68 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhc--cc-CCcEEEEEcchhhhhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLG--RY-ANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~--g~-~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
+.+.+||+||| +|++|.+|++. . .++|++||.+ +.++.. .+++.+ .+ ..+++ .-+.+++.+. ...+|+
T Consensus 75 ~~~~vlDiG~g-tG~~t~~l~~~-g--a~~v~avD~~-~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d-~~~~Dv 146 (228)
T TIGR00478 75 KNKIVLDVGSS-TGGFTDCALQK-G--AKEVYGVDVG-YNQLAEKLRQDERVKVLERTNIR--YVTPADIFPD-FATFDV 146 (228)
T ss_pred CCCEEEEcccC-CCHHHHHHHHc-C--CCEEEEEeCC-HHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCC-ceeeeE
Confidence 56789999996 99999999985 1 4799999999 765543 444322 01 12233 2233333211 235666
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGS 142 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~ 142 (220)
+|+--. ..+..+... |++
T Consensus 147 sfiS~~-------~~l~~i~~~--l~~ 164 (228)
T TIGR00478 147 SFISLI-------SILPELDLL--LNP 164 (228)
T ss_pred EEeehH-------hHHHHHHHH--hCc
Confidence 664432 346666666 554
No 226
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.12 E-value=0.0014 Score=56.44 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE--
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL-- 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf-- 117 (220)
.+..||||||| +|.|+-.|... +=..+.+|++ |.+++.|.+ +.++ -.++.+|--+-||.-.+.||-++
T Consensus 50 ~~~~iLDIGCG-sGLSg~vL~~~----Gh~wiGvDiS-psML~~a~~--~e~e--gdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 50 KSGLILDIGCG-SGLSGSVLSDS----GHQWIGVDIS-PSMLEQAVE--RELE--GDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CCcEEEEeccC-CCcchheeccC----CceEEeecCC-HHHHHHHHH--hhhh--cCeeeeecCCCCCCCCCccceEEEe
Confidence 58999999997 99998876652 4356899999 999999986 2221 24677777777876668899886
Q ss_pred ------EcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 ------IDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 ------iD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
..+++.. .....+|..|... |++ |+--|+
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~--l~r-g~raV~ 158 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSC--LKR-GARAVL 158 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhh--hcc-CceeEE
Confidence 2333311 2234456666666 654 665554
No 227
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.12 E-value=0.0078 Score=51.58 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=84.8
Q ss_pred HHHHHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhh
Q 042616 32 ISALAAGNN-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 32 L~~La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~ 108 (220)
|.++|...+ ...+.|||| --+|.+.+|..--+ ..++++.|.+ +..++.|.+++. ++.++|++..||....+ .
T Consensus 7 L~~va~~V~~~~~iaDIGs-DHAYLp~~Lv~~~~--~~~~va~eV~-~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~ 81 (226)
T COG2384 7 LTTVANLVKQGARIADIGS-DHAYLPIYLVKNNP--ASTAVAGEVV-PGPLESAIRNVKKNNLSERIDVRLGDGLAVL-E 81 (226)
T ss_pred HHHHHHHHHcCCceeeccC-chhHhHHHHHhcCC--cceEEEeecc-cCHHHHHHHHHHhcCCcceEEEeccCCcccc-C
Confidence 344444322 344999998 58999999997532 6899999999 999999999997 78899999999997766 3
Q ss_pred cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 109 DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..+.+|.++|-+=- .....++++.-... |...--+|+..|..
T Consensus 82 ~~d~~d~ivIAGMG-G~lI~~ILee~~~~--l~~~~rlILQPn~~ 123 (226)
T COG2384 82 LEDEIDVIVIAGMG-GTLIREILEEGKEK--LKGVERLILQPNIH 123 (226)
T ss_pred ccCCcCEEEEeCCc-HHHHHHHHHHhhhh--hcCcceEEECCCCC
Confidence 35579999998754 13458888888887 63222456665554
No 228
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.11 E-value=0.0016 Score=57.71 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=83.2
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcC-----CCCcEEEEEeCCchhHHHHHHHHhc--ccC
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAAR-----QTGGRVVCILSGVIGDIDASKKSLG--RYA 92 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~-----~~~grV~tIE~d~~~~~~~Ar~~l~--g~~ 92 (220)
|+...++..++++..++...+..+|+|-.|| +|.+-+.+...+. .....++++|.+ +..+..|+-++- +..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacG-sG~fL~~~~~~i~~~~~~~~~~~i~G~ei~-~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACG-SGGFLVAAMEYIKEKRNKIKEINIYGIEID-PEAVALAKLNLLLHGID 103 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-T-TSHHHHHHHHHHHTCHHHHCCEEEEEEES--HHHHHHHHHHHHHTTHH
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhh-HHHHHHHHHHhhcccccccccceeEeecCc-HHHHHHHHhhhhhhccc
Confidence 4567778889999999988888899999986 8887776665331 125789999999 999999998774 432
Q ss_pred -CcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCc----------------------cHHHHHHHHHhhcCCCCCCE---
Q 042616 93 -NCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDID----------------------GHKNVFRAAKESVMHGSGAG--- 145 (220)
Q Consensus 93 -~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~----------------------~y~~~l~~l~~~~~L~~~Gg--- 145 (220)
.+..+..+|....-... ...||+|+...+-... ...-++..+... |++ ||
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~--Lk~-~G~~~ 180 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL--LKP-GGRAA 180 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT--EEE-EEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh--ccc-cccee
Confidence 34578899876543221 3589999987665111 011356777777 765 55
Q ss_pred EEEEecCCCCC
Q 042616 146 VIVGYNALPKG 156 (220)
Q Consensus 146 viv~dNv~~~g 156 (220)
+|+-+++++.+
T Consensus 181 ~Ilp~~~L~~~ 191 (311)
T PF02384_consen 181 IILPNGFLFSS 191 (311)
T ss_dssp EEEEHHHHHGS
T ss_pred EEecchhhhcc
Confidence 55666666543
No 229
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.11 E-value=0.0086 Score=54.34 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhcC--CCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGDY--RGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~~--~~~D~ 115 (220)
.+..+|+-+|+|.+|..++.+|+.+. ..+|+.+|.+ +++++.|++.... +.+..... +..+.+..+. ..+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G--a~~Viv~d~~-~~Rl~~A~~~~g~--~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG--ASVVIVVDRS-PERLELAKEAGGA--DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CceEEEeCCC-HHHHHHHHHhCCC--eEeecCccccHHHHHHHHhCCCCCCE
Confidence 33458999999999999988888765 4899999999 9999999996641 11111111 3332222222 36999
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+|--... ...++.+... +++ ||.++.-.+..+
T Consensus 242 vie~~G~-----~~~~~~ai~~--~r~-gG~v~~vGv~~~ 273 (350)
T COG1063 242 VIEAVGS-----PPALDQALEA--LRP-GGTVVVVGVYGG 273 (350)
T ss_pred EEECCCC-----HHHHHHHHHH--hcC-CCEEEEEeccCC
Confidence 9865543 4567888887 765 777777666644
No 230
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.08 E-value=0.0033 Score=53.31 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=75.9
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccC---Cc
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYA---NC 94 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~---~~ 94 (220)
++++.+| ..+.|......... +|||||+| +|--+.++|.+++. -+-..-|.+ +....-.+..+. ++. ..
T Consensus 7 aeRNk~p-Il~vL~~~l~~~~~-~vLEiaSG-tGqHa~~FA~~lP~--l~WqPSD~~-~~~~~sI~a~~~~~~~~Nv~~P 80 (204)
T PF06080_consen 7 AERNKDP-ILEVLKQYLPDSGT-RVLEIASG-TGQHAVYFAQALPH--LTWQPSDPD-DNLRPSIRAWIAEAGLPNVRPP 80 (204)
T ss_pred hhhCHhH-HHHHHHHHhCccCc-eEEEEcCC-ccHHHHHHHHHCCC--CEEcCCCCC-hHHHhhHHHHHHhcCCcccCCC
Confidence 3444444 23344443322222 69999986 99999999999974 677888998 776555555554 432 22
Q ss_pred EEEEEcchhhhhh----hcCCCccEEEEcCCCCC---ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 95 IEFVKGDAQKLLM----GDYRGADFVLIDCNIDI---DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 95 Ve~v~gda~~~L~----~~~~~~D~VfiD~~k~~---~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
+.+=..+...-.. ....+||.||.=---+. ......|+.+.+. |++ ||+++.+.-+.
T Consensus 81 ~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~--L~~-gG~L~~YGPF~ 144 (204)
T PF06080_consen 81 LALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARL--LKP-GGLLFLYGPFN 144 (204)
T ss_pred eEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHh--CCC-CCEEEEeCCcc
Confidence 3321111111111 11358999984321111 3456778888888 864 99999998885
No 231
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.04 E-value=0.0051 Score=55.02 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=64.0
Q ss_pred HHHHHHHhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh-
Q 042616 30 EFISALAAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM- 107 (220)
Q Consensus 30 ~~L~~La~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~- 107 (220)
|.+..| +..+....|| || |+-|.|-..|- .+++ .|+++++|.| |++++.|++.+..+.+++.+++++..++..
T Consensus 14 E~i~~L-~~~~~giyiD-~TlG~GGHS~~iL~-~l~~-~~~li~~DrD-~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 14 EVVELL-APKPDGIYID-GTLGAGGHSRAILE-KLPD-LGRLIGIDRD-PQAIAIAKERLKEFDGRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHhc-ccCCCcEEEE-ecCCCcHhHHHHHH-hCCC-CCeEEEEcCC-HHHHHHHHHHhhccCCcEEEEeCcHHHHHHH
Confidence 334333 3344466777 45 44466655554 5665 7999999999 999999999998666899999998766542
Q ss_pred --hc-CCCccEEEEcCCC
Q 042616 108 --GD-YRGADFVLIDCNI 122 (220)
Q Consensus 108 --~~-~~~~D~VfiD~~k 122 (220)
.. ...+|-|++|-..
T Consensus 89 l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 89 LKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHhcCCCceeEEEEeccC
Confidence 22 2589999999887
No 232
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0029 Score=56.51 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=80.6
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----ccC-CcEEEEEcchhhhhhhc
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----RYA-NCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----g~~-~~Ve~v~gda~~~L~~~ 109 (220)
+.+.-+|+++|.||-|-.|+.-. .+.++.-+.+.-+|.| ...++..++++. |++ .+|.+..||.-.++...
T Consensus 116 l~s~~npkkvlVVgggDggvlre---vikH~~ve~i~~~eiD-~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~ 191 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLRE---VIKHKSVENILLCEID-ENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL 191 (337)
T ss_pred cccCCCCCeEEEEecCCccceee---eeccccccceeeehhh-HHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh
Confidence 45678899999999654444322 2233445888999999 999999999885 564 56999999999999776
Q ss_pred -CCCccEEEEcCCCCC----ccH-HHHHHHHHhhcCCCCCCEEEEE
Q 042616 110 -YRGADFVLIDCNIDI----DGH-KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 110 -~~~~D~VfiD~~k~~----~~y-~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.++||.|.+|....- ..| ..+++.+++. |++ +|+++.
T Consensus 192 ~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~a--Lk~-dgv~~~ 234 (337)
T KOG1562|consen 192 KENPFDVIITDSSDPVGPACALFQKPYFGLVLDA--LKG-DGVVCT 234 (337)
T ss_pred ccCCceEEEEecCCccchHHHHHHHHHHHHHHHh--hCC-CcEEEE
Confidence 689999999987511 234 5678888888 876 776554
No 233
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.98 E-value=0.014 Score=50.17 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--hhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--MGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--~~~~~~~D~V 116 (220)
.+..+||=+|++ +|.+--+++.-+.+ .|.|++||.+ +.....--...+. ..||--+.+||..-- ..+.+.+|+|
T Consensus 72 k~gskVLYLGAa-sGTTVSHvSDIvg~-~G~VYaVEfs-~r~~rdL~~la~~-R~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 72 KPGSKVLYLGAA-SGTTVSHVSDIVGP-DGVVYAVEFS-PRSMRDLLNLAKK-RPNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp -TT-EEEEETTT-TSHHHHHHHHHHTT-TSEEEEEESS-HHHHHHHHHHHHH-STTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCEEEEeccc-CCCccchhhhccCC-CCcEEEEEec-chhHHHHHHHhcc-CCceeeeeccCCChHHhhcccccccEE
Confidence 346899999984 89888899998876 8999999999 7554332222221 268888999986422 1224689999
Q ss_pred EEcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~ 149 (220)
|.|-.. .+-.++ ...+... |++.|.++++
T Consensus 148 ~~DVaQ--p~Qa~I~~~Na~~f--Lk~gG~~~i~ 177 (229)
T PF01269_consen 148 FQDVAQ--PDQARIAALNARHF--LKPGGHLIIS 177 (229)
T ss_dssp EEE-SS--TTHHHHHHHHHHHH--EEEEEEEEEE
T ss_pred EecCCC--hHHHHHHHHHHHhh--ccCCcEEEEE
Confidence 999887 555444 4555556 7764444444
No 234
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.93 E-value=0.0065 Score=51.31 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=84.8
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCC--cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTG--GRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~--grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
...|..--..+.|.-..+|..|+|+|+ .-|-|+++.|.-+.+.| -+|+++|+| ...++-+... ...|.|+.|
T Consensus 52 ~k~p~D~~~yQellw~~~P~lvIE~Gs-~~GGSal~fA~~m~s~Gq~~kvl~vdId-i~~~~p~a~e----~p~i~f~eg 125 (237)
T COG3510 52 IKSPSDMWNYQELLWELQPSLVIEFGS-RHGGSALFFANMMISIGQPFKVLGVDID-IKPLDPAARE----VPDILFIEG 125 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCceeEeecc-ccCchhhhhhHhHHhcCCCceEEEEecc-cCcCChhhhc----CCCeEEEeC
Confidence 567877778888888889999999998 47888999888776644 589999999 5554332221 157999999
Q ss_pred chhhh--h---hhc--CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 101 DAQKL--L---MGD--YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 101 da~~~--L---~~~--~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+..+. . ..+ ..+-=||.+|+++.-......++.+.++ |.. |-.+|+.|..
T Consensus 126 ss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pl--lsa-G~Y~vVeDs~ 182 (237)
T COG3510 126 SSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPL--LSA-GDYLVVEDSN 182 (237)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhH--hhc-CceEEEeccc
Confidence 86542 1 111 2234578899988333446667777787 654 7777666555
No 235
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.87 E-value=0.012 Score=52.32 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=77.9
Q ss_pred CCCChhHHHHHHHHHhhC-CCCEEEEEcCCchHHHHHH----HHHHcCCC--CcEEEEEeCCchhHHHHHHHHh------
Q 042616 22 RGKEPDVGEFISALAAGN-NAQLIVMACSSIAVSRTLA----LVAAARQT--GGRVVCILSGVIGDIDASKKSL------ 88 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~-~a~~ILEIGtg~~G~sTl~----LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l------ 88 (220)
.+-+|..=+.|...+... ++-+|+-.||+ +|--+-- |.++.+.. .-+|+++|+| +..++.|++-.
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCS-tGEEpYSlAmll~e~~~~~~~~~~I~atDIs-~~aL~~Ar~G~Y~~~~~ 173 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAAS-TGEEPYSIAMTLADTLGTAPGRWKVFASDID-TEVLEKARSGIYRQEEL 173 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEcccc-CCHHHHHHHHHHHHhhcccCCCcEEEEEECC-HHHHHHHHhCCCCHHHH
Confidence 456777767776655432 34689999984 7844333 33322211 2479999999 99999998752
Q ss_pred ------------c--------------ccCCcEEEEEcchhhhhhhcCCCccEEEEc-----CCCCCccHHHHHHHHHhh
Q 042616 89 ------------G--------------RYANCIEFVKGDAQKLLMGDYRGADFVLID-----CNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 89 ------------~--------------g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD-----~~k~~~~y~~~l~~l~~~ 137 (220)
. .+...|+|...|..+.-....++||+||.= -+. ..-.++++.+...
T Consensus 174 r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~--~~~~~vl~~l~~~ 251 (287)
T PRK10611 174 KTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK--TTQERILRRFVPL 251 (287)
T ss_pred hcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH--HHHHHHHHHHHHH
Confidence 0 123557888888765211113689999841 122 3457888999998
Q ss_pred cCCCCCCEEEEEe
Q 042616 138 VMHGSGAGVIVGY 150 (220)
Q Consensus 138 ~~L~~~Ggviv~d 150 (220)
|+| ||+++.-
T Consensus 252 --L~p-gG~L~lG 261 (287)
T PRK10611 252 --LKP-DGLLFAG 261 (287)
T ss_pred --hCC-CcEEEEe
Confidence 876 8877664
No 236
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.85 E-value=0.0026 Score=51.90 Aligned_cols=95 Identities=21% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch-----hhhhhhc----C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA-----QKLLMGD----Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda-----~~~L~~~----~ 110 (220)
+...+||+|++ .|-+|-.++....+ .++|++||.. +.. .+ ..+.++.||. .+.+... .
T Consensus 23 ~~~~vlDlG~a-PGGws~~~~~~~~~-~~~v~avDl~-~~~------~~----~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAA-PGGWSQVLLQRGGP-AGRVVAVDLG-PMD------PL----QNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-T-TSHHHHHHHTSTTT-EEEEEEEESS-STG------S-----TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCc-ccceeeeeeecccc-cceEEEEecc-ccc------cc----cceeeeecccchhhHHHhhhhhccccc
Confidence 45899999985 99999988876532 5899999999 651 01 2233333332 1222222 2
Q ss_pred CCccEEEEcCCCCC------------ccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 111 RGADFVLIDCNIDI------------DGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 111 ~~~D~VfiD~~k~~------------~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.++|+|+.|..... ......+..+... |+| ||.+|+.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~--L~~-gG~~v~K 138 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALEL--LKP-GGTFVIK 138 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHH--HCT-TEEEEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhh--hcC-CCEEEEE
Confidence 58999999993200 1123344455555 665 8877775
No 237
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.01 Score=54.36 Aligned_cols=100 Identities=19% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+..|+|.=+| +|.=++..|...+. -+|+.=|.+ |++.+.+++|++ +....+++++.||..+|-+....||+|=||
T Consensus 53 ~~~v~Dalsa-tGiRgIRya~E~~~--~~v~lNDis-p~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSA-TGIRGIRYAVETGV--VKVVLNDIS-PKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccc-cchhHhhhhhhcCc--cEEEEccCC-HHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC
Confidence 8999998764 99999998887654 289999999 999999999998 534678888899999997656788988888
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.- +....+++.+... ++ +||++.+-
T Consensus 129 PF---GSPaPFlDaA~~s--~~-~~G~l~vT 153 (380)
T COG1867 129 PF---GSPAPFLDAALRS--VR-RGGLLCVT 153 (380)
T ss_pred CC---CCCchHHHHHHHH--hh-cCCEEEEE
Confidence 75 4678899999998 76 48887653
No 238
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.81 E-value=0.0066 Score=58.00 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=72.1
Q ss_pred cCCCCCChhHHHHHHHHHhhC-------CCCEEEEEcCCchHHHHHHHHHHcCCC------CcEEEEEeCCchhHHHHHH
Q 042616 19 MGKRGKEPDVGEFISALAAGN-------NAQLIVMACSSIAVSRTLALVAAARQT------GGRVVCILSGVIGDIDASK 85 (220)
Q Consensus 19 ~~~~~~~p~~~~~L~~La~~~-------~a~~ILEIGtg~~G~sTl~LA~A~~~~------~grV~tIE~d~~~~~~~Ar 85 (220)
.|+...++..+++|..++... ...+|||.+|| +|.+.+.++..++.. .-.++++|.| +..++.|+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cG-sG~fl~~~~~~~~~~~~~~~~~~~i~g~DId-~~a~~~a~ 80 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCG-DGRLIAALLKKNEEINYFKEVELNIYFADID-KTLLKRAK 80 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCC-ccHHHHHHHHHHHhcCCcccceeeeeeechh-HHHHHHHH
Confidence 366778888999998877432 34689999997 899998888766421 2468999999 99999999
Q ss_pred HHhcccC-CcEEEEEcchhhhh----hhcCCCccEEEEcCCC
Q 042616 86 KSLGRYA-NCIEFVKGDAQKLL----MGDYRGADFVLIDCNI 122 (220)
Q Consensus 86 ~~l~g~~-~~Ve~v~gda~~~L----~~~~~~~D~VfiD~~k 122 (220)
.++.... ..+.+.++|..... +...+.||+|+-.++-
T Consensus 81 ~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 81 KLLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HHHhhcCCCCceeeecccccccccccccccCcccEEEeCCCc
Confidence 9987321 23566666644321 1113579999977654
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.76 E-value=0.0079 Score=53.84 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=49.7
Q ss_pred HHHHHHhhCCC-----CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEEcch
Q 042616 31 FISALAAGNNA-----QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVKGDA 102 (220)
Q Consensus 31 ~L~~La~~~~a-----~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~gda 102 (220)
.|..|....+. -++||||||++..-.| |+... .+=+.++.|+| +..++.|+++++ ++.++|+++..+.
T Consensus 88 ~i~DlL~~~~~~~~~~v~glDIGTGAscIYpL-Lg~~~--~~W~fvaTdID-~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 88 WIADLLASSNPGIPEKVRGLDIGTGASCIYPL-LGAKL--YGWSFVATDID-PKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHT--TCGCS---EEEEES-TTTTHHHH-HHHHH--H--EEEEEES--HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHhhccccccccceEeecCCccHHHHHHH-Hhhhh--cCCeEEEecCC-HHHHHHHHHHHHhccccccceEEEEcCC
Confidence 34455554442 4689999864333333 33222 36799999999 999999999997 5788999987643
Q ss_pred h-hhhhhc---CCCccEEEEcCCC
Q 042616 103 Q-KLLMGD---YRGADFVLIDCNI 122 (220)
Q Consensus 103 ~-~~L~~~---~~~~D~VfiD~~k 122 (220)
. .++..+ .+.|||.....+-
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE----
T ss_pred ccccchhhhcccceeeEEecCCcc
Confidence 3 333332 2579999977766
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.67 E-value=0.019 Score=52.43 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.+.+||||++ +|-+|-.|++. +.+|++||.. +- +..... ..+|+.+.+|.....|. ..++|+++.
T Consensus 210 ~~g~~vlDLGAs-PGGWT~~L~~r----G~~V~AVD~g-~l----~~~L~~--~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAA-PGGWTYQLVRR----GMFVTAVDNG-PM----AQSLMD--TGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCC-CcHHHHHHHHc----CCEEEEEech-hc----CHhhhC--CCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 467899999985 99999988873 7799999977 32 222111 25799999999888874 578999999
Q ss_pred cCCCCCccHHHHHHHHHhh
Q 042616 119 DCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~ 137 (220)
|..- ...+..+.+.+-
T Consensus 277 Dmve---~P~rva~lm~~W 292 (357)
T PRK11760 277 DMVE---KPARVAELMAQW 292 (357)
T ss_pred eccc---CHHHHHHHHHHH
Confidence 9864 445666666665
No 241
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.63 E-value=0.00079 Score=60.12 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHH-HHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTL-ALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK 104 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl-~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~ 104 (220)
..|-+..+--....+.|+|+.+| .||+|+ .|..|- ...|+|+|-+ |..++.-|++++ +..++-.++.||-..
T Consensus 182 ~~EK~Rv~~~sc~~eviVDLYAG-IGYFTlpflV~ag---Ak~V~A~EwN-p~svEaLrR~~~~N~V~~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 182 IKEKKRVLNTSCDGEVIVDLYAG-IGYFTLPFLVTAG---AKTVFACEWN-PWSVEALRRNAEANNVMDRCRITEGDNRN 256 (351)
T ss_pred HHHHHHhhhcccccchhhhhhcc-cceEEeehhhccC---ccEEEEEecC-HHHHHHHHHHHHhcchHHHHHhhhccccc
Confidence 34444444333445889999996 999999 677653 4689999999 999999999997 555677778888776
Q ss_pred hhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCE-EEEEe
Q 042616 105 LLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAG-VIVGY 150 (220)
Q Consensus 105 ~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Gg-viv~d 150 (220)
.-|. ...|-|.+.--. ..-..|.-.+.- |+|.|| ++=++
T Consensus 257 ~~~~--~~AdrVnLGLlP--Sse~~W~~A~k~---Lk~eggsilHIH 296 (351)
T KOG1227|consen 257 PKPR--LRADRVNLGLLP--SSEQGWPTAIKA---LKPEGGSILHIH 296 (351)
T ss_pred cCcc--ccchheeecccc--ccccchHHHHHH---hhhcCCcEEEEe
Confidence 5443 567888877654 222333333333 345566 55444
No 242
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.015 Score=53.59 Aligned_cols=109 Identities=14% Similarity=0.038 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC------------------------------Cc-------
Q 042616 26 PDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT------------------------------GG------- 68 (220)
Q Consensus 26 p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~------------------------------~g------- 68 (220)
+..|.=|-.|+.-.+.+.++|-=|| +|...+-.|.-.+.. .+
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCG-SGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCG-SGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCC-ccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 3344444445433344578888775 787777554433200 01
Q ss_pred EEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCC---------ccHHHHHHHHHhh
Q 042616 69 RVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDI---------DGHKNVFRAAKES 137 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~---------~~y~~~l~~l~~~ 137 (220)
.++|+|.| +.+++.|+.|.. |+.+.|+|.++|+..+-+. .+.+|+|+.+++-.- ..|....+.+++.
T Consensus 256 ~~~G~Did-~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 256 IIYGSDID-PRHIEGAKANARAAGVGDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred eEEEecCC-HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 47899999 999999999997 8889999999999986543 278999998876510 1566666677665
No 243
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.54 E-value=0.0063 Score=51.24 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHc----CCCCc---EEEEEeCCchhHHHHHHH------------------Hh-c--c-
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAA----RQTGG---RVVCILSGVIGDIDASKK------------------SL-G--R- 90 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~----~~~~g---rV~tIE~d~~~~~~~Ar~------------------~l-~--g- 90 (220)
++-+|+-+||+ +|--+--||..+ +...+ +|++.|+| +..++.|++ ++ . +
T Consensus 31 ~~lrIWSagCS-tGeE~YSlAmll~e~~~~~~~~~~~I~atDi~-~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 31 RPLRIWSAGCS-TGEEPYSLAMLLLELLPGALGWDFRILATDIS-PSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-EEEEETT-T-TTHHHHHHHHHHHHHH-S-TT-SEEEEEEES--HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCeEEEECCCC-CChhHHHHHHHHHHHhcccCCCceEEEEEECC-HHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 57789999985 885443333222 22233 89999999 999998875 22 1 1
Q ss_pred -------cCCcEEEEEcchhhhhhhcCCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 91 -------YANCIEFVKGDAQKLLMGDYRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 91 -------~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+.++|+|...|..+ .+...++||+||.=--- +...-.++++.+... |+| ||.++.=
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~--L~p-gG~L~lG 174 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRS--LKP-GGYLFLG 174 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGG--EEE-EEEEEE-
T ss_pred ceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHH--cCC-CCEEEEe
Confidence 23558999998887 22225789999842211 113447888999998 876 8887764
No 244
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.54 E-value=0.0051 Score=51.98 Aligned_cols=73 Identities=14% Similarity=-0.008 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
-+.++|||+|+| +|.-++.-|.+. ...|++.|.+ |...+.++-|.+...-.|.++..|... . ...||+++.
T Consensus 78 VrgkrVLd~gag-sgLvaIAaa~aG---A~~v~a~d~~-P~~~~ai~lNa~angv~i~~~~~d~~g--~--~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAG-SGLVAIAAARAG---AAEVVAADID-PWLEQAIRLNAAANGVSILFTHADLIG--S--PPAFDLLLA 148 (218)
T ss_pred cccceeeecccc-cChHHHHHHHhh---hHHHHhcCCC-hHHHHHhhcchhhccceeEEeeccccC--C--CcceeEEEe
Confidence 346999999996 899988777763 3589999999 999999999987222358888887655 1 367999986
Q ss_pred cC
Q 042616 119 DC 120 (220)
Q Consensus 119 D~ 120 (220)
.-
T Consensus 149 gD 150 (218)
T COG3897 149 GD 150 (218)
T ss_pred ec
Confidence 54
No 245
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.51 E-value=0.0081 Score=52.93 Aligned_cols=49 Identities=10% Similarity=0.001 Sum_probs=40.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.++|++|||+|+| .|..+.+.....+ .-.++++||.+ +.+.+.++..++
T Consensus 31 ~f~P~~vLD~GsG-pGta~wAa~~~~~-~~~~~~~vd~s-~~~~~l~~~l~~ 79 (274)
T PF09243_consen 31 DFRPRSVLDFGSG-PGTALWAAREVWP-SLKEYTCVDRS-PEMLELAKRLLR 79 (274)
T ss_pred CCCCceEEEecCC-hHHHHHHHHHHhc-CceeeeeecCC-HHHHHHHHHHHh
Confidence 4689999999986 8876665555555 36789999999 999999999887
No 246
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.47 E-value=0.017 Score=52.51 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=73.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE---
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI--- 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi--- 118 (220)
...||+|. |+|..+-.+..- - -+|-.|++| ...+..++.++. ..|+.+.||...-+|. -|+||+
T Consensus 179 ~~avDvGg-GiG~v~k~ll~~-f---p~ik~infd-lp~v~~~a~~~~---~gV~~v~gdmfq~~P~----~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGG-GIGRVLKNLLSK-Y---PHIKGINFD-LPFVLAAAPYLA---PGVEHVAGDMFQDTPK----GDAIWMKWI 245 (342)
T ss_pred ceEEEcCC-cHhHHHHHHHHh-C---CCCceeecC-HHHHHhhhhhhc---CCcceecccccccCCC----cCeEEEEee
Confidence 77899996 599998888873 3 268999999 555555555553 1288899998665654 478885
Q ss_pred --cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 119 --DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 119 --D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..- ++...+|+.+.+. |.|+|.+||.+|+...
T Consensus 246 LhdwtD--edcvkiLknC~~s--L~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 246 LHDWTD--EDCVKILKNCKKS--LPPGGKIIVVENVTPE 280 (342)
T ss_pred cccCCh--HHHHHHHHHHHHh--CCCCCEEEEEeccCCC
Confidence 3333 6778999999999 9999999999998875
No 247
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.38 E-value=0.07 Score=46.39 Aligned_cols=147 Identities=18% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCCChhHHHHHHHHHhhC---CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 21 KRGKEPDVGEFISALAAGN---NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~---~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
|..+.|+..-.=..++... ..++||-+|= --..+|++|..-. ..+|+-+|+| +..++..++..+ |+ +|
T Consensus 22 Q~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGD--DDLtSlA~al~~~--~~~I~VvDiD-eRll~fI~~~a~~~gl--~i 94 (243)
T PF01861_consen 22 QGYATPETTLRRAALMAERGDLEGKRILFLGD--DDLTSLALALTGL--PKRITVVDID-ERLLDFINRVAEEEGL--PI 94 (243)
T ss_dssp ---B-HHHHHHHHHHHHHTT-STT-EEEEES---TT-HHHHHHHHT----SEEEEE-S--HHHHHHHHHHHHHHT----E
T ss_pred cccccHHHHHHHHHHHHhcCcccCCEEEEEcC--CcHHHHHHHhhCC--CCeEEEEEcC-HHHHHHHHHHHHHcCC--ce
Confidence 4456666642222222322 4799999994 3566676665433 5899999999 999999988887 66 39
Q ss_pred EEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC----CccceEEEeeecCC
Q 042616 96 EFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG----SWRGYKTHFLPIGE 170 (220)
Q Consensus 96 e~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g----~~~~~~s~~lPig~ 170 (220)
+.++.|..+-||.- .+.||++|.|++-..+-..=.+...... |+.+|+.+.+ ..-.+. .|..++..++ .-
T Consensus 95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~--Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~--~~ 169 (243)
T PF01861_consen 95 EAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEA--LKGEGCAGYF-GFTHKEASPDKWLEVQRFLL--EM 169 (243)
T ss_dssp EEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHT--B-STT-EEEE-EE-TTT--HHHHHHHHHHHH--TS
T ss_pred EEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHH--hCCCCceEEE-EEecCcCcHHHHHHHHHHHH--HC
Confidence 99999999999864 5899999999986212223335555555 6666754333 111121 2543444444 66
Q ss_pred cEEEEEEee
Q 042616 171 GLLVTRIGE 179 (220)
Q Consensus 171 Gl~v~~~~~ 179 (220)
|+.|+....
T Consensus 170 gl~i~dii~ 178 (243)
T PF01861_consen 170 GLVITDIIP 178 (243)
T ss_dssp --EEEEEEE
T ss_pred CcCHHHHHh
Confidence 777776653
No 248
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.37 E-value=0.043 Score=48.98 Aligned_cols=99 Identities=10% Similarity=0.080 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+.++||-+|+|++|..++.+|+++. ..+|++++.+ +++.+.|++. |...-+.....+..+.+.. .+.+|+|| |
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~-~~~~~~a~~l--Ga~~vi~~~~~~~~~~~~~-~g~~D~vi-d 241 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVS-PRSLSLAREM--GADKLVNPQNDDLDHYKAE-KGYFDVSF-E 241 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCC-HHHHHHHHHc--CCcEEecCCcccHHHHhcc-CCCCCEEE-E
Confidence 4688999999999999999998852 2379999999 9999988873 2211122112233333321 24589876 5
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+-- . ...++.+.+. +++ ||.++.-..
T Consensus 242 ~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~ 267 (343)
T PRK09880 242 VSG--H--PSSINTCLEV--TRA-KGVMVQVGM 267 (343)
T ss_pred CCC--C--HHHHHHHHHH--hhc-CCEEEEEcc
Confidence 543 2 2345666666 665 777776544
No 249
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.36 E-value=0.11 Score=46.91 Aligned_cols=127 Identities=10% Similarity=0.064 Sum_probs=79.9
Q ss_pred CCChhHHHHHHH----HHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc-ccCCc
Q 042616 23 GKEPDVGEFISA----LAAGNN-AQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG-RYANC 94 (220)
Q Consensus 23 ~~~p~~~~~L~~----La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~-g~~~~ 94 (220)
.......++|.. +|+..+ ...+||+||| .|.=|-.|..++.+. .-+.+.||++ .+.++.+.+.+. ..-..
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG-~~~Kt~~LL~aL~~~~~~~~Y~plDIS-~~~L~~a~~~L~~~~~p~ 131 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSG-NLRKVGILLEALERQKKSVDYYALDVS-RSELQRTLAELPLGNFSH 131 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCC-chHHHHHHHHHHHhcCCCceEEEEECC-HHHHHHHHHhhhhccCCC
Confidence 344445555544 333333 3479999997 788788888887542 2568999999 999999999887 32134
Q ss_pred EEE--EEcchhhhhhhc-----CC-CccEEEEcCCCCC---ccHHHHHHHHHh-hcCCCCCCEEEEEecCC
Q 042616 95 IEF--VKGDAQKLLMGD-----YR-GADFVLIDCNIDI---DGHKNVFRAAKE-SVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 95 Ve~--v~gda~~~L~~~-----~~-~~D~VfiD~~k~~---~~y~~~l~~l~~-~~~L~~~Ggviv~dNv~ 153 (220)
+++ ++||..+.+..+ .. +--+.|+...-.+ .+-...|+.+.. . |.|.+.+||.=|..
T Consensus 132 l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~--l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 132 VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATA--LSPSDSFLIGLDGC 200 (319)
T ss_pred eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhh--CCCCCEEEEecCCC
Confidence 555 899987764322 12 3344555544411 223456677776 6 77877777765544
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.26 E-value=0.12 Score=37.32 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=63.9
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCc--EEEEEcchhh-hhhhcC-CCccEEEEc
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANC--IEFVKGDAQK-LLMGDY-RGADFVLID 119 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~--Ve~v~gda~~-~L~~~~-~~~D~VfiD 119 (220)
++|+||| +|..+ .++..... ...++++|.+ +..++.++..... ... +.+..++... .++... ..||++...
T Consensus 52 ~ld~~~g-~g~~~-~~~~~~~~-~~~~~~~d~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCG-TGRLA-LLARLGGR-GAYVVGVDLS-PEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCC-cCHHH-HHHHhCCC-CceEEEEeCC-HHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 9999996 89877 44433222 2488999999 8888875554422 222 7888888876 344322 379999433
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
...........+..+.+. ++| +|.++.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~--l~~-~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLPPAKALRELLRV--LKP-GGRLVLSDLL 157 (257)
T ss_pred eehhcCCHHHHHHHHHHh--cCC-CcEEEEEecc
Confidence 332001136778888888 776 6665555443
No 251
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.21 E-value=0.062 Score=47.25 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE-
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL- 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf- 117 (220)
++..++||||+| .|-.|..|+.. -.+|++.|.+ +.+...-++ +|+ +++ +..+. .+...+||+|-
T Consensus 93 ~~~~~lLDlGAG-dG~VT~~l~~~----f~~v~aTE~S-~~Mr~rL~~--kg~----~vl--~~~~w-~~~~~~fDvIsc 157 (265)
T PF05219_consen 93 WKDKSLLDLGAG-DGEVTERLAPL----FKEVYATEAS-PPMRWRLSK--KGF----TVL--DIDDW-QQTDFKFDVISC 157 (265)
T ss_pred ccCCceEEecCC-CcHHHHHHHhh----cceEEeecCC-HHHHHHHHh--CCC----eEE--ehhhh-hccCCceEEEee
Confidence 467889999997 89999999875 3579999999 777543322 133 222 22222 12245799995
Q ss_pred ---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 ---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 ---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|=- ......++.+... |+| +|++|.
T Consensus 158 LNvLDRc---~~P~~LL~~i~~~--l~p-~G~lil 186 (265)
T PF05219_consen 158 LNVLDRC---DRPLTLLRDIRRA--LKP-NGRLIL 186 (265)
T ss_pred hhhhhcc---CCHHHHHHHHHHH--hCC-CCEEEE
Confidence 4422 4567889999998 988 666555
No 252
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.038 Score=46.95 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hh----hhcC-C
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LL----MGDY-R 111 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L----~~~~-~ 111 (220)
.+...|+|+|+ +.|.++-.+++-+.. +++|++||.. |-.. . .+|.++++|..+ .+ ..+. .
T Consensus 44 ~~~~~ViDLGA-APGgWsQva~~~~~~-~~~ivavDi~-p~~~---------~-~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGA-APGGWSQVAAKKLGA-GGKIVAVDIL-PMKP---------I-PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCC-CCCcHHHHHHHHhCC-CCcEEEEECc-cccc---------C-CCceEEeeeccCccHHHHHHHHcCCC
Confidence 45799999998 588888888887776 7789999999 4321 2 348888888632 22 2222 4
Q ss_pred CccEEEEcCCCCC-----ccH-------HHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNIDI-----DGH-------KNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~~-----~~y-------~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
++|+|..|...+. .+. ...++.+... |+| ||.+++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~v--L~~-~G~fv~K~ 159 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEV--LKP-GGSFVAKV 159 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHe--eCC-CCeEEEEE
Confidence 5799999987611 111 2234555555 765 88888773
No 253
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=96.16 E-value=0.081 Score=48.28 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc----chh
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG----DAQ 103 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g----da~ 103 (220)
.+.-+.+. +..+...+.-+|+|++|.+++.-|.++. .+++++||++ +++.+.|++.=. ..+++. |..
T Consensus 174 ~Gav~nta-~v~~G~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD~~-~~Kl~~A~~fGA-----T~~vn~~~~~~vv 244 (366)
T COG1062 174 IGAVVNTA-KVEPGDTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVDIN-PEKLELAKKFGA-----THFVNPKEVDDVV 244 (366)
T ss_pred hHHhhhcc-cCCCCCeEEEEeccHhHHHHHHHHHHcC--CceEEEEeCC-HHHHHHHHhcCC-----ceeecchhhhhHH
Confidence 34444333 5566788999999999999998888765 5999999999 999999998632 333333 455
Q ss_pred hhhhhcC-CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 104 KLLMGDY-RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 104 ~~L~~~~-~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+.+..+- ...|++| |+.- ++ +.+++.... +.+ +|..+.-.+-.+
T Consensus 245 ~~i~~~T~gG~d~~~-e~~G---~~-~~~~~al~~--~~~-~G~~v~iGv~~~ 289 (366)
T COG1062 245 EAIVELTDGGADYAF-ECVG---NV-EVMRQALEA--THR-GGTSVIIGVAGA 289 (366)
T ss_pred HHHHHhcCCCCCEEE-EccC---CH-HHHHHHHHH--Hhc-CCeEEEEecCCC
Confidence 5554543 4789995 4432 22 367777776 544 776666555443
No 254
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.15 E-value=0.047 Score=52.35 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=68.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-------------cchhh
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-------------GDAQK 104 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-------------gda~~ 104 (220)
..++.+|+-+|+|.+|..++..|.++ |.+|+.+|.+ +++.+.++++=... -.+..-. .+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l---GA~V~a~D~~-~~rle~aeslGA~~-v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL---GAIVRAFDTR-PEVAEQVESMGAEF-LELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHHcCCeE-EEeccccccccccchhhhcchhHHH
Confidence 45789999999999999999988876 5689999999 99999998841110 0011111 11111
Q ss_pred ----hhhhcCCCccEEEEcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEEecCCC
Q 042616 105 ----LLMGDYRGADFVLIDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 105 ----~L~~~~~~~D~VfiD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.+.+....+|+|+--+..+....+.. .+...+. ++| ||+||.-.+-.
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~--mkp-GgvIVdvg~~~ 288 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVAS--MKP-GSVIVDLAAEN 288 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHh--cCC-CCEEEEEccCC
Confidence 11111246999986665411112344 4777777 765 88877655433
No 255
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.0067 Score=57.42 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD 109 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~ 109 (220)
+..+.+..++-+|||.=+ ++|.-+|..|.-++. -++|++-|.+ +..++..++|.+ +.++.|+..++||..++-..
T Consensus 101 ~~~~~~~~~~l~vLeals-AtGlrslRya~El~~-v~~v~AnD~~-~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 101 AALLKREEKSLRVLEALS-ATGLRSLRYAKELPG-VRQVVANDLN-ENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH 177 (525)
T ss_pred cchhhhccCcchHHHHhh-hhhHHHHHHHHHhcc-hhhhcccCCC-HHHHHHHHhhhhhcCchhhcccccchHHHHHHhc
Confidence 455667788889999754 599999999988875 7899999999 999999999998 66788999999999887543
Q ss_pred C---CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 Y---RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~---~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
. ..||+|=+|.- +....+|+.+.+. ++ .||++.+-
T Consensus 178 ~~~~~~FDvIDLDPy---Gs~s~FLDsAvqa--v~-~gGLL~vT 215 (525)
T KOG1253|consen 178 PMVAKFFDVIDLDPY---GSPSPFLDSAVQA--VR-DGGLLCVT 215 (525)
T ss_pred cccccccceEecCCC---CCccHHHHHHHHH--hh-cCCEEEEE
Confidence 3 67999988875 4567888999998 75 59998764
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.063 Score=45.75 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=71.8
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh--hhcCCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL--MGDYRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L--~~~~~~~D~ 115 (220)
..+..+||=+|+ ++|.+.-+.+.-+. .|+++|||.+ +.....--...+. ..||--+.+||..-- ..+-+..|+
T Consensus 74 i~~g~~VLYLGA-asGTTvSHVSDIv~--~G~iYaVEfs-~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 74 IKEGSKVLYLGA-ASGTTVSHVSDIVG--EGRIYAVEFS-PRPMRELLDVAEK-RPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred cCCCCEEEEeec-cCCCcHhHHHhccC--CCcEEEEEec-chhHHHHHHHHHh-CCCceeeecccCCcHHhhhhcccccE
Confidence 345789999998 48988888998776 6999999999 7665433333222 267888889985421 133478999
Q ss_pred EEEcCCCCCccHHHH-HHHHHhhcCCCCCCEEEEEecC
Q 042616 116 VLIDCNIDIDGHKNV-FRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 116 VfiD~~k~~~~y~~~-l~~l~~~~~L~~~Ggviv~dNv 152 (220)
||.|-.. .+-.++ .+.+... |++.|.++++--+
T Consensus 149 iy~DVAQ--p~Qa~I~~~Na~~F--Lk~~G~~~i~iKA 182 (231)
T COG1889 149 IYQDVAQ--PNQAEILADNAEFF--LKKGGYVVIAIKA 182 (231)
T ss_pred EEEecCC--chHHHHHHHHHHHh--cccCCeEEEEEEe
Confidence 9999988 555555 3444555 6665555555333
No 257
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=96.05 E-value=0.071 Score=49.06 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=62.7
Q ss_pred CCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc----CCcEEEEE----cchhhhhhhc
Q 042616 39 NNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY----ANCIEFVK----GDAQKLLMGD 109 (220)
Q Consensus 39 ~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~----~~~Ve~v~----gda~~~L~~~ 109 (220)
.+.++||-+| +|++|..++.+|+++.....+|++++.+ +++++.|++.+... .....++. .+..+.+..+
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~-~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVN-DERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCC-HHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 3457888887 5789999988888753212489999999 99999999864310 00112222 2333333222
Q ss_pred --CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 110 --YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 110 --~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
...+|.+|..... ...++.+.+. +++.|++++.
T Consensus 253 t~g~g~D~vid~~g~-----~~~~~~a~~~--l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVPV-----PELVEEADTL--LAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCCC-----HHHHHHHHHH--hccCCeEEEE
Confidence 2469988865443 2345566666 6655666554
No 258
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.02 E-value=0.064 Score=48.45 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=61.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.++||-.|+|++|..++.+|++. +. +|++++.+ +++.+.+++. |...-+.....+..+.+..+ .+.+|+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~---G~~~Vi~~~~~-~~r~~~a~~~--Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA---GASQVVAVDLN-EDKLALAREL--GATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCcEEEEcCC-HHHHHHHHHc--CCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 34568898899988999998888875 44 79999999 9998888763 22111222222333323222 236897
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+| |+-- ....++.+.+. +++ ||.++.-.
T Consensus 263 vi-d~~G----~~~~~~~~~~~--l~~-~G~iv~~G 290 (371)
T cd08281 263 AF-EMAG----SVPALETAYEI--TRR-GGTTVTAG 290 (371)
T ss_pred EE-ECCC----ChHHHHHHHHH--Hhc-CCEEEEEc
Confidence 76 5543 12345556666 655 66655443
No 259
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.00 E-value=0.06 Score=48.31 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=63.9
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.++||-.|+|++|..++.+|++. +. +|++++.+ +++.+.+++. |...-+.....+..+.+... ...+|
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~---G~~~Vi~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA---GASKIIAVDID-DRKLEWAREF--GATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHc--CCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 35678999999988999999999875 44 59999999 8988888653 32111222223333333232 23689
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|| |+-- . ...++.+... +++ ||.++.-..
T Consensus 248 ~vi-d~~g--~--~~~~~~~~~~--~~~-~G~iv~~G~ 277 (358)
T TIGR03451 248 VVI-DAVG--R--PETYKQAFYA--RDL-AGTVVLVGV 277 (358)
T ss_pred EEE-ECCC--C--HHHHHHHHHH--hcc-CCEEEEECC
Confidence 776 6654 2 2345566666 655 777776544
No 260
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.79 E-value=0.038 Score=41.95 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCccEEEEcCCCCCccHHH
Q 042616 52 AVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGADFVLIDCNIDIDGHKN 129 (220)
Q Consensus 52 ~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~D~VfiD~~k~~~~y~~ 129 (220)
+|..++.+|++. +.+|++++.+ +++.+.++++-. ..-+..-..|..+.+..+. ..+|.||--... ..
T Consensus 2 vG~~a~q~ak~~---G~~vi~~~~~-~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-----~~ 70 (130)
T PF00107_consen 2 VGLMAIQLAKAM---GAKVIATDRS-EEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-----GD 70 (130)
T ss_dssp HHHHHHHHHHHT---TSEEEEEESS-HHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----HH
T ss_pred hHHHHHHHHHHc---CCEEEEEECC-HHHHHHHHhhcc--cccccccccccccccccccccccceEEEEecCc-----HH
Confidence 789999999886 5899999999 999999887532 0111111223444444433 369988754443 46
Q ss_pred HHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 130 VFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 130 ~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.++..... +++ ||.++.-....
T Consensus 71 ~~~~~~~~--l~~-~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKL--LRP-GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHH--EEE-EEEEEEESSTS
T ss_pred HHHHHHHH--hcc-CCEEEEEEccC
Confidence 77888887 765 88888776665
No 261
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.79 E-value=0.073 Score=46.43 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
...+....++..+...+.... +....| |....+..+++ ..+++..|.. |+..+.-++++.+. .+|.+.+.|+
T Consensus 41 ~~p~~l~~yl~~v~~~n~~~~-l~~YPG----SP~ia~~llR~-qDrl~l~ELH-p~d~~~L~~~~~~~-~~v~v~~~DG 112 (245)
T PF04378_consen 41 DLPPALQPYLDAVRALNPDGE-LRFYPG----SPAIAARLLRE-QDRLVLFELH-PQDFEALKKNFRRD-RRVRVHHRDG 112 (245)
T ss_dssp GS-GGGHHHHHHHHHHSSSSS---EEE-----HHHHHHHHS-T-TSEEEEE--S-HHHHHHHTTS--TT-S-EEEE-S-H
T ss_pred cchHHHHHHHHHHHHhccCCC-cCcCCC----CHHHHHHhCCc-cceEEEEecC-chHHHHHHHHhccC-CccEEEeCch
Confidence 345566778877766655443 555554 34444445565 7899999999 99999888888753 5899999999
Q ss_pred hhhhhhcCCCcc---EEEEcCCC-CCccHHHHHHHHHhhc-CCCCCCEEEEEecCCCCC
Q 042616 103 QKLLMGDYRGAD---FVLIDCNI-DIDGHKNVFRAAKESV-MHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 103 ~~~L~~~~~~~D---~VfiD~~k-~~~~y~~~l~~l~~~~-~L~~~Ggviv~dNv~~~g 156 (220)
.+.+..+..+-. +|+||.+- ...+|.++.+.+...- +- +.|.++|-+=++.+.
T Consensus 113 ~~~l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~-~~G~~~iWYPi~~~~ 170 (245)
T PF04378_consen 113 YEGLKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRW-PTGVYAIWYPIKDRE 170 (245)
T ss_dssp HHHHHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH--TTSEEEEEEEESSHH
T ss_pred hhhhhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhc-CCcEEEEEeecccHH
Confidence 998766654444 99999953 1267766655554320 02 557777777776543
No 262
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.76 E-value=0.024 Score=44.38 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=39.8
Q ss_pred EEEEEcchhhhhhhcCCCccEEEEcCCCCCccH----HHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 95 IEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGH----KNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 95 Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y----~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+++..||+.+.|+++...+|.+|+|+-....+. .++|+.+.++ +++ ||+++.+.+-
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~--~~~-~~~l~Tys~a 92 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARL--SKP-GGTLATYSSA 92 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHH--EEE-EEEEEES--B
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHH--hCC-CcEEEEeech
Confidence 688999999999998889999999974322222 8899999998 765 9999987543
No 263
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.75 E-value=0.069 Score=48.46 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=69.5
Q ss_pred HHHHHHHhhC----CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----------ccCCc
Q 042616 30 EFISALAAGN----NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----------RYANC 94 (220)
Q Consensus 30 ~~L~~La~~~----~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----------g~~~~ 94 (220)
.||+..+... +...|||+|||=-|=.--|... + -++++++|++ ++.++.|++..+ ...-.
T Consensus 48 ~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~--i~~~vg~Dis-~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 48 VLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--K--IKHYVGIDIS-EESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T---SEEEEEES--HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--C--CCEEEEEeCC-HHHHHHHHHHHHHhccccccccccccch
Confidence 4555555432 6789999999633545556553 1 5899999999 999999988772 11234
Q ss_pred EEEEEcchhh-hhhhc----CCCccEEEEcCCCCC----c-cHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 95 IEFVKGDAQK-LLMGD----YRGADFVLIDCNIDI----D-GHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 95 Ve~v~gda~~-~L~~~----~~~~D~VfiD~~k~~----~-~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+++.+|... .|... ..+||+|=.=-.-++ + .-...++.+... |+| ||+++.-
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~--Lk~-GG~FIgT 185 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSL--LKP-GGYFIGT 185 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHT--EEE-EEEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHh--cCC-CCEEEEE
Confidence 7889998742 22211 248999864433211 2 234578888888 886 9998873
No 264
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.71 E-value=0.11 Score=46.11 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~V 116 (220)
.+.++||-.|+|.+|..++.+|++. +.+ |++++.+ ++..+.+++. |...-+.....+..++.... ...+|-+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~---G~~~v~~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVAL---GAKSVTAIDIN-SEKLALAKSL--GAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCC-HHHHHHHHHc--CCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 4568999899988999999899876 444 7899999 8888877653 22111221122222222211 2468878
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++|+-- . ...++.+.+. |++ ||.++.-...
T Consensus 233 v~d~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~~ 262 (347)
T PRK10309 233 ILETAG--V--PQTVELAIEI--AGP-RAQLALVGTL 262 (347)
T ss_pred EEECCC--C--HHHHHHHHHH--hhc-CCEEEEEccC
Confidence 888875 2 3456666666 665 7777765443
No 265
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.69 E-value=0.12 Score=45.75 Aligned_cols=134 Identities=12% Similarity=0.110 Sum_probs=81.5
Q ss_pred hHHHHHHHHhc--CCCCCChhHHHHHHHHHh-----hC--CCCEEEEEcCCchHH----HHHHHHHHcCC---CCcEEEE
Q 042616 9 ATKAYLQALKM--GKRGKEPDVGEFISALAA-----GN--NAQLIVMACSSIAVS----RTLALVAAARQ---TGGRVVC 72 (220)
Q Consensus 9 a~~aY~~~l~~--~~~~~~p~~~~~L~~La~-----~~--~a~~ILEIGtg~~G~----sTl~LA~A~~~---~~grV~t 72 (220)
..++.++++-. ...+-+|+.-+.|...+. .. ++-+|+-+||+ +|- .++.|.++.+. ..=+|++
T Consensus 56 e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCS-tGEEpYSiAm~l~e~~~~~~~~~~~I~A 134 (268)
T COG1352 56 ELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACS-TGEEPYSLAMLLLEALGKLAGFRVKILA 134 (268)
T ss_pred HHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcC-CCccHHHHHHHHHHHhccccCCceEEEE
Confidence 34455555333 235667777666655554 22 37789999985 883 33445555432 2357899
Q ss_pred EeCCchhHHHHHHH-------------------Hhc----c-------cCCcEEEEEcchhhhhhhcCCCccEEEE----
Q 042616 73 ILSGVIGDIDASKK-------------------SLG----R-------YANCIEFVKGDAQKLLMGDYRGADFVLI---- 118 (220)
Q Consensus 73 IE~d~~~~~~~Ar~-------------------~l~----g-------~~~~Ve~v~gda~~~L~~~~~~~D~Vfi---- 118 (220)
.|+| ...++.|++ +|. + +.+.|+|...|..+--+ ..+.||+||.
T Consensus 135 tDId-~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVL 212 (268)
T COG1352 135 TDID-LSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVL 212 (268)
T ss_pred EECC-HHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceE
Confidence 9999 999988764 121 1 11336666666654332 3567999982
Q ss_pred -cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 -DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 -D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
=-++ ..=.++++..... |+| ||+++.-
T Consensus 213 IYFd~--~~q~~il~~f~~~--L~~-gG~LflG 240 (268)
T COG1352 213 IYFDE--ETQERILRRFADS--LKP-GGLLFLG 240 (268)
T ss_pred EeeCH--HHHHHHHHHHHHH--hCC-CCEEEEc
Confidence 1122 3346778888888 876 8887764
No 266
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.011 Score=48.75 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----ccCCcE---EEEEcchhhhhhhcCC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RYANCI---EFVKGDAQKLLMGDYR 111 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~~~~V---e~v~gda~~~L~~~~~ 111 (220)
.++.|||+|.|.+|.+++.+|..++ ...|.-.|-+ ++.++-.++... ++ +.+ +...-.++... ...
T Consensus 29 rg~~ilelgggft~laglmia~~a~--~~~v~ltdgn-e~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~aqsq~--eq~ 102 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGN-EESVRNVEKIRNSNMASSL-TSCCVLRWLIWGAQSQQ--EQH 102 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC--CceEEEecCC-HHHHHHHHHHHhccccccc-ceehhhHHHHhhhHHHH--hhC
Confidence 4588999998889999998888776 4788888999 666655554332 22 222 22222233322 146
Q ss_pred CccEEE-EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 112 GADFVL-IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 112 ~~D~Vf-iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.||+|+ -||--=.+-.....+.+..+ |+|.|.-+++
T Consensus 103 tFDiIlaADClFfdE~h~sLvdtIk~l--L~p~g~Al~f 139 (201)
T KOG3201|consen 103 TFDIILAADCLFFDEHHESLVDTIKSL--LRPSGRALLF 139 (201)
T ss_pred cccEEEeccchhHHHHHHHHHHHHHHH--hCcccceeEe
Confidence 899987 35533102235667788888 8898886665
No 267
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.67 E-value=0.12 Score=46.31 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.+.||-+|+|++|..++.+|+++.- +.+|+.++.+ +++++.|++ +. ....+ . + +.. ...+|+||
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~-~~k~~~a~~-~~----~~~~~-~---~-~~~-~~g~d~vi- 227 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKH-QEKLDLFSF-AD----ETYLI-D---D-IPE-DLAVDHAF- 227 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCc-HhHHHHHhh-cC----ceeeh-h---h-hhh-ccCCcEEE-
Confidence 456899999999899988888775321 4589999999 999988875 22 11111 1 1 111 12589876
Q ss_pred cCCCCCcc-HHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 119 DCNIDIDG-HKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 119 D~~k~~~~-y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- .. ....++.+.+. +++ ||.++.-.+
T Consensus 228 D~~G--~~~~~~~~~~~~~~--l~~-~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--GRGSQSAINQIIDY--IRP-QGTIGLMGV 257 (341)
T ss_pred ECCC--CCccHHHHHHHHHh--CcC-CcEEEEEee
Confidence 5543 22 34567777777 765 777766543
No 268
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.65 E-value=0.065 Score=47.12 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=67.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~ 121 (220)
+++|+.|| +|-.++.|..+- ...+.++|.| +.+++.-+.|+... ++++|..++.+.. ...+|+++.+.+
T Consensus 2 ~v~dLFsG-~Gg~~~gl~~~G---~~~v~a~e~~-~~a~~~~~~N~~~~-----~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAG-IGGFRLGLEKAG---FEIVAANEID-KSAAETYEANFPNK-----LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccC-cchHHHHHHHcC---CEEEEEEeCC-HHHHHHHHHhCCCC-----CccCccccCchhhcCCCCCEEEeCCC
Confidence 58999986 888888887652 2357889999 99988888887521 5667777765432 457999997753
Q ss_pred C---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 122 I---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 122 k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
= ++..+.++++.+... +| -+++..||-
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~---~P--~~~v~ENV~ 113 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEK---KP--KYFLLENVK 113 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhc---CC--CEEEEEcCc
Confidence 2 112356677777664 45 589999996
No 269
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.57 E-value=0.23 Score=44.65 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=64.8
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~-~~~ 112 (220)
+...+.++||-.|+ |++|..++.+|++. |.+|++++.+ ++..+.+++.+. ...-+..... +..+.+... .+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~~~-~~k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH---GCYVVGSAGS-SQKVDLLKNKLG-FDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEcCC-HHHHHHHHHhcC-CCEEEECCCcccHHHHHHHHCCCC
Confidence 33456788998887 77999999899875 6789999999 888887764443 2111222212 343433332 246
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+|++| |+-- . ..++.+... |++ ||.++....
T Consensus 229 vD~v~-d~vG--~---~~~~~~~~~--l~~-~G~iv~~G~ 259 (348)
T PLN03154 229 IDIYF-DNVG--G---DMLDAALLN--MKI-HGRIAVCGM 259 (348)
T ss_pred cEEEE-ECCC--H---HHHHHHHHH--hcc-CCEEEEECc
Confidence 89877 6654 2 356666776 665 676665443
No 270
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.56 E-value=0.13 Score=46.75 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCChhHHHHHHHHHh---------hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCC
Q 042616 23 GKEPDVGEFISALAA---------GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYAN 93 (220)
Q Consensus 23 ~~~p~~~~~L~~La~---------~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~ 93 (220)
.++-++|.|+.-|+- -....+||-+|+|-+|..|+.-|+|+. ..+|+-+|.. +.+++.||+ +. . +
T Consensus 143 ~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G--A~~VVi~d~~-~~Rle~Ak~-~G-a-~ 216 (354)
T KOG0024|consen 143 NVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG--ASDVVITDLV-ANRLELAKK-FG-A-T 216 (354)
T ss_pred CCchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC--CCcEEEeecC-HHHHHHHHH-hC-C-e
Confidence 455556666655443 345688999999999999999999986 4899999999 999999999 54 1 1
Q ss_pred cEEEEEc--chhh---hhhhcC--CCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 94 CIEFVKG--DAQK---LLMGDY--RGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 94 ~Ve~v~g--da~~---~L~~~~--~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+..... ++.+ .+.... ..+|+.| ||.- ....++..... +++.|.++++.
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~-dCsG----~~~~~~aai~a--~r~gGt~vlvg 273 (354)
T KOG0024|consen 217 VTDPSSHKSSPQELAELVEKALGKKQPDVTF-DCSG----AEVTIRAAIKA--TRSGGTVVLVG 273 (354)
T ss_pred EEeeccccccHHHHHHHHHhhccccCCCeEE-EccC----chHHHHHHHHH--hccCCEEEEec
Confidence 1222221 1222 232222 3589887 4433 23455666666 66645555554
No 271
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.53 E-value=0.049 Score=43.59 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=54.4
Q ss_pred EEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCC-CccEEEEc------CCC----CCccHHHHHHHHH
Q 042616 69 RVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYR-GADFVLID------CNI----DIDGHKNVFRAAK 135 (220)
Q Consensus 69 rV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~-~~D~VfiD------~~k----~~~~y~~~l~~l~ 135 (220)
+|+++|+- +++++.+++.++ ++.++|++++..=+.+...+.. ++|+++.. +++ ........++.+.
T Consensus 1 kVyaFDIQ-~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQ-EEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES--HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECH-HHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 999999999997 6667899999876664433334 79999865 222 1134467788888
Q ss_pred hhcCCCCCCEEEEEecCCCCC
Q 042616 136 ESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 136 ~~~~L~~~Ggviv~dNv~~~g 156 (220)
++ |+| ||+|+. +.++|
T Consensus 80 ~l--L~~-gG~i~i--v~Y~G 95 (140)
T PF06962_consen 80 EL--LKP-GGIITI--VVYPG 95 (140)
T ss_dssp HH--EEE-EEEEEE--EE--S
T ss_pred Hh--hcc-CCEEEE--EEeCC
Confidence 88 876 888766 34444
No 272
>PLN02827 Alcohol dehydrogenase-like
Probab=95.51 E-value=0.14 Score=46.64 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=63.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~~ 112 (220)
...+.+.||-.|+|++|..++.+|++. +. +|++++.+ +++.+.|++. |....+.... .+..+.+..+ .+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~---G~~~vi~~~~~-~~~~~~a~~l--Ga~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLR---GASQIIGVDIN-PEKAEKAKTF--GVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCC-HHHHHHHHHc--CCcEEEcccccchHHHHHHHHHhCCC
Confidence 345678999999988999999999875 44 68999989 8888888653 3311122211 1333333332 236
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNA 152 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv 152 (220)
+|+|| |+-- ....+..+.+. +++ | |.++.-.+
T Consensus 264 ~d~vi-d~~G----~~~~~~~~l~~--l~~-g~G~iv~~G~ 296 (378)
T PLN02827 264 ADYSF-ECVG----DTGIATTALQS--CSD-GWGLTVTLGV 296 (378)
T ss_pred CCEEE-ECCC----ChHHHHHHHHh--hcc-CCCEEEEECC
Confidence 89776 5543 12345556665 655 5 78776543
No 273
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.49 E-value=0.13 Score=46.08 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=63.3
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc--CCC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD--YRG 112 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~--~~~ 112 (220)
..+.++||-.|+|.+|..++.+|++. +.+|++++.+ +++.+.+++. |....+..... +..+.+..+ ...
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~---G~~vi~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM---GAAVVAIDID-PEKLEMMKGF--GADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEcCC-HHHHHHHHHh--CCceEecCccccHHHHHHHHHhhcccCC
Confidence 34568999999988999999999875 5689999999 8888888663 32111221121 222222222 134
Q ss_pred ccE---EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADF---VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~---VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|. +++|+.- . ...++.+.+. |++ ||.++.-...
T Consensus 238 ~d~~~d~v~d~~g--~--~~~~~~~~~~--l~~-~G~iv~~G~~ 274 (349)
T TIGR03201 238 LRSTGWKIFECSG--S--KPGQESALSL--LSH-GGTLVVVGYT 274 (349)
T ss_pred CCCCcCEEEECCC--C--hHHHHHHHHH--Hhc-CCeEEEECcC
Confidence 652 5667765 2 3455556666 655 7776665443
No 274
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.48 E-value=0.14 Score=44.65 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=59.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFV 116 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~V 116 (220)
..+..+||..|+|.+|..++.+|.+. +.+|++++.+ ++..+.+++. +....+.....+..+.+... ...+|.+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~---G~~V~~~~~s-~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM---GAAVIAVDIK-EEKLELAKEL--GADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc---CCEEEEEcCC-HHHHHHHHHh--CCCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 44567888888877889888888875 6689999999 8888777552 22111111112222222111 3579965
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+-. ....++.+.+. |++ +|.++.
T Consensus 237 -id~~g----~~~~~~~~~~~--l~~-~G~~v~ 261 (338)
T cd08254 237 -FDFVG----TQPTFEDAQKA--VKP-GGRIVV 261 (338)
T ss_pred -EECCC----CHHHHHHHHHH--hhc-CCEEEE
Confidence 56643 13456666776 665 666554
No 275
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.45 E-value=0.027 Score=52.99 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=49.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL 105 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~ 105 (220)
-.+|+|||| +|..++..+.|. +..|+++|.- ..+.+.||+... |.+++|.+++.-..++
T Consensus 68 v~vLdigtG-TGLLSmMAvrag---aD~vtA~Evf-kPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTG-TGLLSMMAVRAG---ADSVTACEVF-KPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCC-ccHHHHHHHHhc---CCeEEeehhh-chHHHHHHHHHhcCCCccceeeecccccee
Confidence 356999997 999999877775 4579999999 999999999886 8889999988766553
No 276
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.053 Score=47.06 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=72.1
Q ss_pred CCCChhHHHHHHHHHh---hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhcccCCcEEE
Q 042616 22 RGKEPDVGEFISALAA---GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLGRYANCIEF 97 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~---~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~g~~~~Ve~ 97 (220)
..+++.--.|..+|-. ..+.+.+||||++ ||-+|-.|.+-- ..+|++||.. ...+. .-|. ..+|..
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsS-TGGFTd~lLq~g---Ak~VyavDVG-~~Ql~~kLR~-----d~rV~~ 127 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSS-TGGFTDVLLQRG---AKHVYAVDVG-YGQLHWKLRN-----DPRVIV 127 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCC-CccHHHHHHHcC---CcEEEEEEcc-CCccCHhHhc-----CCcEEE
Confidence 3455555455555532 3557899999984 999999888742 3689999998 33221 1222 245555
Q ss_pred EEc-chhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 98 VKG-DAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 98 v~g-da~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.. ++..+-|.. .+..||+++|-.- -....+|..+... +.+ ++.++.
T Consensus 128 ~E~tN~r~l~~~~~~~~~d~~v~DvSF--ISL~~iLp~l~~l--~~~-~~~~v~ 176 (245)
T COG1189 128 LERTNVRYLTPEDFTEKPDLIVIDVSF--ISLKLILPALLLL--LKD-GGDLVL 176 (245)
T ss_pred EecCChhhCCHHHcccCCCeEEEEeeh--hhHHHHHHHHHHh--cCC-CceEEE
Confidence 443 343332222 3578999999988 7777788888887 654 666554
No 277
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.43 E-value=0.23 Score=44.82 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
.+.++||-.|+|++|..++.+|++. +.+|+.++.+ ++. .+.+++ + |. + .++. .+..+ +....+.+|++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~---Ga~vi~~~~~-~~~~~~~~~~-~-Ga-~--~vi~~~~~~~-~~~~~~~~D~v 251 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF---GLKVTVISSS-SNKEDEAINR-L-GA-D--SFLVSTDPEK-MKAAIGTMDYI 251 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-cchhhhHHHh-C-CC-c--EEEcCCCHHH-HHhhcCCCCEE
Confidence 3567888899988999999999875 5688888887 544 334333 2 22 1 1111 11112 22222468988
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
| |+-- ....++.+.+. |++ ||.++.-
T Consensus 252 i-d~~g----~~~~~~~~~~~--l~~-~G~iv~v 277 (360)
T PLN02586 252 I-DTVS----AVHALGPLLGL--LKV-NGKLITL 277 (360)
T ss_pred E-ECCC----CHHHHHHHHHH--hcC-CcEEEEe
Confidence 7 6643 12345666666 665 6666654
No 278
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.43 E-value=0.28 Score=46.75 Aligned_cols=133 Identities=14% Similarity=0.035 Sum_probs=91.1
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc--ccCCcE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG--RYANCI 95 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~--g~~~~V 95 (220)
|+...+.++.++|..+....+.++|.|-.|| +|.+-+..+..+... ...++..|.+ +..+..|+.|+- +....+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacG-sgg~l~~a~~~~~~~~~~~~~yGqE~~-~~t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACG-SGGMLLQAAKYLKRHQDEIFIYGQEIN-DTTYRLAKMNLILHGIEGDA 243 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCc-hhHHHHHHHHHHHhhccceeEEEEeCC-HHHHHHHHHHHHHhCCCccc
Confidence 5677888899999999998777899999887 665555544444322 2678999999 999999999885 653356
Q ss_pred EEEEcchhhhhhh----cCCCccEEEEcCCC--------------------------CCccHHHHHHHHHhhcCCCC--C
Q 042616 96 EFVKGDAQKLLMG----DYRGADFVLIDCNI--------------------------DIDGHKNVFRAAKESVMHGS--G 143 (220)
Q Consensus 96 e~v~gda~~~L~~----~~~~~D~VfiD~~k--------------------------~~~~y~~~l~~l~~~~~L~~--~ 143 (220)
...++|...-... ....||+|+-..+- .+..+..++..+... |.| +
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~--l~~~g~ 321 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYK--LKPGGR 321 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHh--cCCCce
Confidence 6777765443212 12568877533222 012334456667776 665 3
Q ss_pred CEEEEEecCCCCC
Q 042616 144 AGVIVGYNALPKG 156 (220)
Q Consensus 144 Ggviv~dNv~~~g 156 (220)
.|+|+.++++++|
T Consensus 322 aaivl~~gvlfr~ 334 (489)
T COG0286 322 AAIVLPDGVLFRG 334 (489)
T ss_pred EEEEecCCcCcCC
Confidence 5789999999986
No 279
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.42 E-value=0.11 Score=45.74 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+.+++|-+|+|++|..++.+|++. +.+ |++++.+ +++++.|++.. .+ |..+. ....+|+||
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~---G~~~v~~~~~~-~~rl~~a~~~~-----~i-----~~~~~---~~~g~Dvvi- 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA---GGSPPAVWETN-PRRRDGATGYE-----VL-----DPEKD---PRRDYRAIY- 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCceEEEeCCC-HHHHHhhhhcc-----cc-----Chhhc---cCCCCCEEE-
Confidence 456899899999999999999875 444 7778888 88777665431 01 11110 124689776
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- . ...++.+.+. +++ ||.++.-..
T Consensus 206 d~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG--D--PSLIDTLVRR--LAK-GGEIVLAGF 232 (308)
T ss_pred ECCC--C--HHHHHHHHHh--hhc-CcEEEEEee
Confidence 6644 2 2356677776 765 777776543
No 280
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.34 E-value=0.062 Score=46.82 Aligned_cols=95 Identities=9% Similarity=0.076 Sum_probs=69.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEEEcC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVLIDC 120 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~ 120 (220)
..+++|||+ .|+..-.|-.- .-++++-+|.+ -.+++.++..-. ++ .+...++| +++|+.-++++|+|+---
T Consensus 74 p~a~diGcs-~G~v~rhl~~e---~vekli~~DtS-~~M~~s~~~~qdp~i--~~~~~v~D-EE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 74 PTAFDIGCS-LGAVKRHLRGE---GVEKLIMMDTS-YDMIKSCRDAQDPSI--ETSYFVGD-EEFLDFKENSVDLIISSL 145 (325)
T ss_pred cceeecccc-hhhhhHHHHhc---chhheeeeecc-hHHHHHhhccCCCce--EEEEEecc-hhcccccccchhhhhhhh
Confidence 568999986 99988876542 25899999999 888888776543 22 25556677 566765568999998543
Q ss_pred ---CCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 121 ---NIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 121 ---~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+. .+.+.++..++.. |+| .|++++
T Consensus 146 slHW~--NdLPg~m~~ck~~--lKP-Dg~Fia 172 (325)
T KOG2940|consen 146 SLHWT--NDLPGSMIQCKLA--LKP-DGLFIA 172 (325)
T ss_pred hhhhh--ccCchHHHHHHHh--cCC-Cccchh
Confidence 33 4568889999998 887 666655
No 281
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.24 E-value=0.061 Score=47.00 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhcCCC---CCChhHHHHHHHHHhhCC-CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH
Q 042616 8 NATKAYLQALKMGKR---GKEPDVGEFISALAAGNN-AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA 83 (220)
Q Consensus 8 ~a~~aY~~~l~~~~~---~~~p~~~~~L~~La~~~~-a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~ 83 (220)
.+.++++..+-..+. ---|..-+|+..+-...+ +.+|+||||| .-..|+.... .. ++.+++++|+| .+.++.
T Consensus 69 e~~~~~~r~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCG-lNPlalp~~~-~~-~~a~Y~a~DID-~~~ve~ 144 (251)
T PF07091_consen 69 EAIRAWCRRLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCG-LNPLALPWMP-EA-PGATYIAYDID-SQLVEF 144 (251)
T ss_dssp HHHHHHHHHHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-T-TCHHHHHTTT-SS-TT-EEEEEESB-HHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhhhcc-CCceehhhcc-cC-CCcEEEEEeCC-HHHHHH
Confidence 344555555322220 113445566666666544 8999999996 5666663332 22 26799999999 999999
Q ss_pred HHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 84 SKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 84 Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
..+.+.-+.-..++...|...-.| ....|+.++
T Consensus 145 l~~~l~~l~~~~~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 145 LNAFLAVLGVPHDARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp HHHHHHHTT-CEEEEEE-TTTSHT--TSEESEEEE
T ss_pred HHHHHHhhCCCcceeEeeeeccCC--CCCcchhhH
Confidence 999887333345666666655443 356898885
No 282
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.19 E-value=0.072 Score=46.99 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=68.5
Q ss_pred HHHhhCCCCEEEEEcCCchHH-HHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchhh---hhh-
Q 042616 34 ALAAGNNAQLIVMACSSIAVS-RTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQK---LLM- 107 (220)
Q Consensus 34 ~La~~~~a~~ILEIGtg~~G~-sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~~---~L~- 107 (220)
.|+...+-+-.||||||-.-. .+--.|++..+ +.||+.||.| |-.+..+|..+.+- ..+..++++|..+ +|.
T Consensus 62 ~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P-~aRVVYVD~D-Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~ 139 (267)
T PF04672_consen 62 YLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAP-DARVVYVDND-PVVLAHARALLADNPRGRTAYVQADLRDPEAILAH 139 (267)
T ss_dssp HHHCTT---EEEEET--S--SS-HHHHHHHH-T-T-EEEEEESS-HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCS
T ss_pred HHHHhcCcceEEEcccCCCCCCCHhHHHHhhCC-CceEEEECCC-chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcC
Confidence 344444678899999862111 34457777776 8999999999 99999999999832 2358999998754 342
Q ss_pred -hc------CCCccEEEEcCCC---CCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 108 -GD------YRGADFVLIDCNI---DIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 108 -~~------~~~~D~VfiD~~k---~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.. ..++=++++.--+ +.++...+++.+... |. +|+.|+.-.....
T Consensus 140 p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~--la-pGS~L~ish~t~d 194 (267)
T PF04672_consen 140 PEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDA--LA-PGSYLAISHATDD 194 (267)
T ss_dssp HHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCC--S--TT-EEEEEEEB-T
T ss_pred HHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHh--CC-CCceEEEEecCCC
Confidence 11 2455566554311 225678889999998 75 5999888766654
No 283
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.19 E-value=0.32 Score=43.78 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=63.3
Q ss_pred hhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC--CCc
Q 042616 37 AGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY--RGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~--~~~ 113 (220)
.....+.||-.| +|++|..++.||+++ +++++.+-.. ++..+.+++.- ...-|.....|..+-+.++. ..+
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~---G~~~v~~~~s-~~k~~~~~~lG--Ad~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKAL---GATVVAVVSS-SEKLELLKELG--ADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHc---CCcEEEEecC-HHHHHHHHhcC--CCEEEcCCcccHHHHHHHHcCCCCc
Confidence 355679999998 678999999999986 4477777676 56555555443 22235566666666554443 369
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+|| |+-- .+.+...... |++ +|.++.-...
T Consensus 213 Dvv~-D~vG-----~~~~~~~l~~--l~~-~G~lv~ig~~ 243 (326)
T COG0604 213 DVVL-DTVG-----GDTFAASLAA--LAP-GGRLVSIGAL 243 (326)
T ss_pred eEEE-ECCC-----HHHHHHHHHH--hcc-CCEEEEEecC
Confidence 9987 3333 2344445555 555 4555554443
No 284
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.19 E-value=0.31 Score=42.49 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=62.6
Q ss_pred HHhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCC
Q 042616 35 LAAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRG 112 (220)
Q Consensus 35 La~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~ 112 (220)
++...+.+.||-.| +|++|..++.+|++. |.+|+++..+ ++..+.+++ + |...-+.....+..+.+... .+.
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s-~~~~~~l~~-~-Ga~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGS-DDKVAWLKE-L-GFDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHH-c-CCCEEEeCCCccHHHHHHHHCCCC
Confidence 34456678898888 477898888888875 6689999999 888888876 3 33111222223333333222 346
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|+|| |+-- . ..++.+.+. |++ +|.++.
T Consensus 212 vd~vl-d~~g--~---~~~~~~~~~--l~~-~G~iv~ 239 (329)
T cd08294 212 IDCYF-DNVG--G---EFSSTVLSH--MND-FGRVAV 239 (329)
T ss_pred cEEEE-ECCC--H---HHHHHHHHh--hcc-CCEEEE
Confidence 99776 6654 2 445666666 665 566554
No 285
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=95.12 E-value=0.35 Score=44.77 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=83.8
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|....+=..|++..++..++-..+| .+..+..|...+++ |.+|++.+.-=.......+..+....-.++++..
T Consensus 50 ~R~gnPt~~~le~~la~Le~g~~a~~~~SG-maAi~~~l~~ll~~-Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~ 127 (386)
T PF01053_consen 50 SRYGNPTVRALEQRLAALEGGEDALLFSSG-MAAISAALLALLKP-GDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP 127 (386)
T ss_dssp TTTC-HHHHHHHHHHHHHHT-SEEEEESSH-HHHHHHHHHHHS-T-TBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred eccccccHHHHHHHHHHhhcccceeeccch-HHHHHHHHHhhccc-CCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence 367889999999999999999888877654 55555555555555 8898887654234444555555432223555544
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCCCCCCccceEEEeeecCCcEEEEEEe
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNALPKGSWRGYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~~~g~~~~~~s~~lPig~Gl~v~~~~ 178 (220)
|..++-..+.+..++||+..+.....-...++.+.+. .+..| .++|+||.+-.. ..+-|+.-|..|..-.
T Consensus 128 ~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~--a~~~g~~~~vVDnT~atp------~~~~pL~~GaDivv~S 199 (386)
T PF01053_consen 128 TDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKL--AKEHGDILVVVDNTFATP------YNQNPLELGADIVVHS 199 (386)
T ss_dssp TSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHH--HHHTTT-EEEEECTTTHT------TTC-GGGGT-SEEEEE
T ss_pred hhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHH--HHHhCCceEEeeccccce------eeeccCcCCceEEEee
Confidence 3344433335689999999886221112223333322 22347 999999998421 1113555555555554
Q ss_pred e
Q 042616 179 E 179 (220)
Q Consensus 179 ~ 179 (220)
.
T Consensus 200 ~ 200 (386)
T PF01053_consen 200 A 200 (386)
T ss_dssp T
T ss_pred c
Confidence 4
No 286
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.12 E-value=0.4 Score=42.15 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=63.2
Q ss_pred HHhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhc-CC
Q 042616 35 LAAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGD-YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~-~~ 111 (220)
.+...+.++||-.| +|++|..++.+|++. |.+|+++..+ ++..+.+++ + |...-+..... +..+.+... .+
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~~s-~~~~~~~~~-l-Ga~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAAGS-DEKVAYLKK-L-GFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHH-c-CCCEEEeccccccHHHHHHHhCCC
Confidence 34455678998888 467888888888874 6789999999 888888765 3 32111222221 233333222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+|++| |+-- . ..++.+... |++ ||.++...
T Consensus 207 gvdvv~-d~~G--~---~~~~~~~~~--l~~-~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYF-DNVG--G---EFSNTVIGQ--MKK-FGRIAICG 237 (325)
T ss_pred CeEEEE-ECCC--H---HHHHHHHHH--hCc-CcEEEEec
Confidence 699877 6654 2 235666666 665 77777654
No 287
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.08 E-value=0.24 Score=44.27 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeC---CchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILS---GVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~---d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
.+.++||-+|+|++|..++.+|+++ +.+|++++. + +++.+.+++. |. +.+.....+..+ . .....+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~-~~~~~~~~~~--Ga-~~v~~~~~~~~~-~-~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR---GFEVYVLNRRDPP-DPKADIVEEL--GA-TYVNSSKTPVAE-V-KLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCC-HHHHHHHHHc--CC-EEecCCccchhh-h-hhcCCCCE
Confidence 3568899999999999999999875 558999987 6 6777777653 22 112111122222 1 11357897
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
||--... ...+..+.+. +++ ||.++.-...
T Consensus 242 vid~~g~-----~~~~~~~~~~--l~~-~G~~v~~G~~ 271 (355)
T cd08230 242 IIEATGV-----PPLAFEALPA--LAP-NGVVILFGVP 271 (355)
T ss_pred EEECcCC-----HHHHHHHHHH--ccC-CcEEEEEecC
Confidence 7643332 2356666676 665 7777665443
No 288
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.99 E-value=0.31 Score=43.02 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=59.1
Q ss_pred CEEEEEcC-CchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 42 QLIVMACS-SIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGt-g~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
++||-.|. |++|..++.+|++. +. +|++++.+ ++..+.+++.+. ....+.....+..+.+..+ ...+|++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s-~~~~~~~~~~lG-a~~vi~~~~~~~~~~i~~~~~~gvd~vi- 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL---GCSRVVGICGS-DEKCQLLKSELG-FDAAINYKTDNVAERLRELCPEGVDVYF- 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCCEEEEEcCC-HHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHCCCCceEEE-
Confidence 78988885 77898888888874 55 79999999 888887776443 2111222222333333222 24699887
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+-- .. .++.+.+. |++ +|.++.-
T Consensus 230 d~~g--~~---~~~~~~~~--l~~-~G~iv~~ 253 (345)
T cd08293 230 DNVG--GE---ISDTVISQ--MNE-NSHIILC 253 (345)
T ss_pred ECCC--cH---HHHHHHHH--hcc-CCEEEEE
Confidence 6654 22 24666666 665 6666653
No 289
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.98 E-value=0.42 Score=42.29 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=63.4
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-chhhhhhhc-CCC
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG-DAQKLLMGD-YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g-da~~~L~~~-~~~ 112 (220)
+...+.++||-.|+ |++|..++.+|++. |.+|+++..+ ++..+.+++.+. ....+..... +..+.+... ...
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~-~~~~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK---GCYVVGSAGS-DEKVDLLKNKLG-FDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHhcC-CceeEEcCCcccHHHHHHHhCCCC
Confidence 34556789998886 67888888888875 6789999999 888888877443 2111221111 333333222 257
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|++| |+-- . ..+..+.+. |++ +|.++..
T Consensus 222 vd~v~-d~~g--~---~~~~~~~~~--l~~-~G~iv~~ 250 (338)
T cd08295 222 IDIYF-DNVG--G---KMLDAVLLN--MNL-HGRIAAC 250 (338)
T ss_pred cEEEE-ECCC--H---HHHHHHHHH--hcc-CcEEEEe
Confidence 99887 6654 2 345666666 665 6666654
No 290
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=0.024 Score=52.28 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v 98 (220)
..++.....-|..+++....+..|++++| ..|..|..+|.-++. -|++.+.|.+ +.+++.-++.++ |. ..++.+
T Consensus 194 ~~ilqd~asclpA~ll~p~~g~~v~d~ca-apg~KTsH~a~i~~n-~gki~afe~d-~~r~~tl~~~l~~ag~-~~~~~~ 269 (413)
T KOG2360|consen 194 KFILQDKASCLPAHLLDPRPGSRVIDTCA-APGNKTSHLAAIMRN-QGKIYAFERD-AKRAATLRKLLKIAGV-SIVESV 269 (413)
T ss_pred ceEEechhhcchhhhcCCCCCCceeeecc-ccccchhhHHHHhhc-cCCcchhhhh-hHHHHHHHHHHHHcCC-Cccccc
Confidence 34555555667788888888899999987 699999999987765 8999999999 999999999887 65 568888
Q ss_pred Ecchhhh-hhhcCCCccEEEEcCCC
Q 042616 99 KGDAQKL-LMGDYRGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~~-L~~~~~~~D~VfiD~~k 122 (220)
++|+... -|......-+|++|..-
T Consensus 270 ~~df~~t~~~~~~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 270 EGDFLNTATPEKFRDVTYILVDPSC 294 (413)
T ss_pred cccccCCCCcccccceeEEEeCCCC
Confidence 9998874 23334667788888654
No 291
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=94.91 E-value=0.39 Score=43.22 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=61.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc--chhhhhhhc-CCCc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG--DAQKLLMGD-YRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g--da~~~L~~~-~~~~ 113 (220)
..+.++||-+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |...-+....- +..+.+..+ ...+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~~~-~~~~~~~~~~--ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIA---GASRIIGVDIN-EDKFEKAKEF--GATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHHc--CCCcEeccccccchHHHHHHHHhCCCC
Confidence 45678999889988999999899875 45 79999999 8888888653 22111221111 112222221 2468
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+|| |+.- . ...++.+... +++.+|.++.-..
T Consensus 256 d~vi-d~~g--~--~~~~~~~~~~--l~~~~G~~v~~g~ 287 (365)
T cd08277 256 DYSF-ECTG--N--ADLMNEALES--TKLGWGVSVVVGV 287 (365)
T ss_pred CEEE-ECCC--C--hHHHHHHHHh--cccCCCEEEEEcC
Confidence 9776 5543 2 2345666666 6553366555433
No 292
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=94.88 E-value=0.45 Score=42.98 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=61.7
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CCCc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YRGA 113 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~~~ 113 (220)
....+.||-.|+|++|..++.+|+++ +. +|++++.+ +++.+.|++. |....+.... .+..+.+.++ .+.+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~---G~~~Vi~~~~~-~~~~~~a~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA---KASRIIAIDIN-PAKFELAKKL--GATDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHh--CCCeEEcccccchhHHHHHHHHhCCCC
Confidence 45578999999988999999999875 55 79999999 9998888663 2211122111 1122222222 2368
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|++| |+-- . ...+..+... +++.+|.++.-..
T Consensus 257 d~vi-d~~G--~--~~~~~~~~~~--~~~~~G~~v~~g~ 288 (368)
T TIGR02818 257 DYSF-ECIG--N--VNVMRAALEC--CHKGWGESIIIGV 288 (368)
T ss_pred CEEE-ECCC--C--HHHHHHHHHH--hhcCCCeEEEEec
Confidence 9776 6543 1 2345555555 5543366655433
No 293
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.81 E-value=0.37 Score=39.79 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=30.3
Q ss_pred CCCCEEEEEcC-CchHHHHH--HHHHHcCCCCcEEEEEeCCchhHHHH
Q 042616 39 NNAQLIVMACS-SIAVSRTL--ALVAAARQTGGRVVCILSGVIGDIDA 83 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl--~LA~A~~~~~grV~tIE~d~~~~~~~ 83 (220)
.+++.|.-.++ |++|-+|+ .||.++...+.+|.-||.| +..-..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D-~~~~~l 61 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD-MRNSVM 61 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC-CCChhH
Confidence 34666665544 45777665 5788877767899999999 765443
No 294
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=94.69 E-value=0.55 Score=41.88 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=44.3
Q ss_pred hHHHHHHHHhcCCC---CCChhHHHHHHHHHhhC-----CCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCc
Q 042616 9 ATKAYLQALKMGKR---GKEPDVGEFISALAAGN-----NAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGV 77 (220)
Q Consensus 9 a~~aY~~~l~~~~~---~~~p~~~~~L~~La~~~-----~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~ 77 (220)
....|...+..+.. ..+.+..++...+.+.. +++.|.-+|. ||+|-||+. ||.++...+.+|.-||.|
T Consensus 53 ~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D- 131 (322)
T TIGR03815 53 GGALWRAAAAVGAEHVAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDAD- 131 (322)
T ss_pred CHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecC-
Confidence 34456666666542 23334455555555442 2455655654 779999964 777777656789999998
Q ss_pred hhH
Q 042616 78 IGD 80 (220)
Q Consensus 78 ~~~ 80 (220)
+..
T Consensus 132 ~~~ 134 (322)
T TIGR03815 132 PWG 134 (322)
T ss_pred CCC
Confidence 663
No 295
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.52 E-value=0.79 Score=40.78 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=59.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-.|+|++|..++.+|++. +.+|++++.+ +++.+.|++. |....+.. .+.. .+.+|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~---G~~vi~~~~~-~~~~~~a~~~--Ga~~vi~~-----~~~~---~~~~d~~ 227 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ---GATVHVMTRG-AAARRLALAL--GAASAGGA-----YDTP---PEPLDAA 227 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC---CCeEEEEeCC-hHHHHHHHHh--CCceeccc-----cccC---cccceEE
Confidence 345568999999887888888888874 6689999999 8888888774 22111110 0100 2357876
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+..... . ..+....+. |++ ||.++.-..
T Consensus 228 i~~~~~--~---~~~~~~~~~--l~~-~G~~v~~G~ 255 (329)
T TIGR02822 228 ILFAPA--G---GLVPPALEA--LDR-GGVLAVAGI 255 (329)
T ss_pred EECCCc--H---HHHHHHHHh--hCC-CcEEEEEec
Confidence 543333 2 356667776 765 777666544
No 296
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.48 E-value=0.16 Score=46.20 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCC----cEEEEEcchhh-hhhhc-
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYAN----CIEFVKGDAQK-LLMGD- 109 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~----~Ve~v~gda~~-~L~~~- 109 (220)
.+..-++++|||=-|=.--|...+ -+.++|||+. +.-++.|++..+ +..+ .++|+.||... .|..+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg----I~~~igiDIA-evSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG----IGEYIGIDIA-EVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc----ccceEeeehh-hccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 455678889997334443455432 4799999999 888888887664 3322 48999999743 23222
Q ss_pred --CCC-ccEEEEc-----CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 --YRG-ADFVLID-----CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 --~~~-~D~VfiD-----~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+ ||+|=.- +....+.-...++.+.++ |+| ||+.+.-
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~--Lkp-GG~FIgT 236 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKC--LKP-GGVFIGT 236 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhh--cCC-CcEEEEe
Confidence 234 8987322 111112334457777777 876 9998873
No 297
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=94.36 E-value=0.56 Score=42.15 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=62.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YR 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~ 111 (220)
+...+.+.||-.|+|++|..++.+|+++ +. +|++++.+ +++.+.+++. |....+.... .+..+.+..+ .+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~---G~~~vi~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~ 256 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR---GASRIIGVDLN-PSKFEQAKKF--GVTEFVNPKDHDKPVQEVIAEMTGG 256 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHHc--CCceEEcccccchhHHHHHHHHhCC
Confidence 3455678999999988999999999875 44 89999999 8888888652 2211122211 1122223222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+|++| |+-- . ...+..+... +++.+|.++.-...
T Consensus 257 ~~d~vi-d~~G--~--~~~~~~~~~~--~~~~~g~~v~~g~~ 291 (369)
T cd08301 257 GVDYSF-ECTG--N--IDAMISAFEC--VHDGWGVTVLLGVP 291 (369)
T ss_pred CCCEEE-ECCC--C--hHHHHHHHHH--hhcCCCEEEEECcC
Confidence 689554 6643 1 2344555555 55423676655443
No 298
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.33 E-value=0.75 Score=40.57 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=58.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.++||-+|+|++|..++.+|++. +.+ |++++.+ +++.+.+++. |....+.....+...+.... ...+|+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~---G~~~vi~~~~~-~~~~~~~~~~--ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL---GAEDVIGVDPS-PERLELAKAL--GADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh--CCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 35578999999988999998888875 556 9999999 8888887653 22111222122222222111 236998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+| |+.- . ...+....+. |++ +|.++.-
T Consensus 235 vi-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~ 261 (339)
T cd08239 235 AI-ECSG--N--TAARRLALEA--VRP-WGRLVLV 261 (339)
T ss_pred EE-ECCC--C--HHHHHHHHHH--hhc-CCEEEEE
Confidence 76 5533 1 2234444555 555 6666543
No 299
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.31 E-value=0.62 Score=42.38 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=65.5
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc-hhhhhhhc--CCC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD-AQKLLMGD--YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd-a~~~L~~~--~~~ 112 (220)
+...+.+.||.+|+|.+|..++.+|++.. .+++++++.+ +++.+.+++.. +. ..+.....+ ..+.+..+ ...
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g--~~~vi~~~~~-~~~~~~~~~~~-~~-~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLG--AERVIAIDRV-PERLEMARSHL-GA-ETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCC-HHHHHHHHHcC-Cc-EEEcCCcchHHHHHHHHHcCCCC
Confidence 34456788999999877999999999863 2479999999 99999888864 22 223333332 33323222 236
Q ss_pred ccEEEEcCCCC-----------------CccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 113 ADFVLIDCNID-----------------IDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 113 ~D~VfiD~~k~-----------------~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
+|++| |+--. ..+....++.+.+. +++ +|.++.-
T Consensus 255 ~D~vl-d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~G~iv~~ 305 (386)
T cd08283 255 PDVCI-DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQA--VRK-GGTVSII 305 (386)
T ss_pred CCEEE-ECCCCcccccccccccccccccccCchHHHHHHHHH--hcc-CCEEEEE
Confidence 99775 44310 01124467777777 766 5655543
No 300
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=94.29 E-value=0.81 Score=40.14 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=63.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEE-cchhhhhhhcCCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVK-GDAQKLLMGDYRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~-gda~~~L~~~~~~~ 113 (220)
+...+.++||-.|+|++|..++.+|.+.. +.+|+++..+ ++..+.+++ + |. +.+ .... .+..+.+....+.+
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~--g~~v~~~~~~-~~~~~~~~~-~-g~-~~v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF--NAKVIAVDIN-DDKLALAKE-V-GA-DLTINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC--CCeEEEEeCC-hHHHHHHHH-c-CC-cEEecccccccHHHHHHHhcCCC
Confidence 34456788988898889999988888632 6789999999 888888854 3 32 221 1111 12223332333468
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++|+++.. . ..++.+.+. |++ +|.++.
T Consensus 232 d~vi~~~~~--~---~~~~~~~~~--l~~-~G~~v~ 259 (338)
T PRK09422 232 HAAVVTAVA--K---AAFNQAVDA--VRA-GGRVVA 259 (338)
T ss_pred cEEEEeCCC--H---HHHHHHHHh--ccC-CCEEEE
Confidence 988888754 2 346667776 655 555553
No 301
>PRK05967 cystathionine beta-lyase; Provisional
Probab=94.28 E-value=1.6 Score=40.63 Aligned_cols=130 Identities=11% Similarity=0.038 Sum_probs=72.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|....|=..++...++...+-+.+| .+..+..+..-+++ |.+|++.++.-.......++.++.+.-.++++..+
T Consensus 60 R~gnPt~~~Le~~la~le~~~~~v~~sSG-~aAi~~~l~all~~-GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~ 137 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEGSAGTILVPSG-LAAVTVPFLGFLSP-GDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE 137 (395)
T ss_pred CCCChHHHHHHHHHHHHhCCCCEEEECcH-HHHHHHHHHHhcCC-CCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 45677666666666665555444545544 44433333333554 88999987772333334444454332346666433
Q ss_pred hhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 AQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 a~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..+.+... .+...+|++..+...-.....++.+.+. .+..|.++|+||++..
T Consensus 138 ~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~l--a~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 138 IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEA--AHRHGAIVMMDNTWAT 190 (395)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHH--HHHhCCEEEEECCccC
Confidence 22333332 3567899999765212223345555554 3345899999999853
No 302
>PRK07671 cystathionine beta-lyase; Provisional
Probab=94.23 E-value=0.93 Score=41.51 Aligned_cols=130 Identities=11% Similarity=0.031 Sum_probs=73.0
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..++...+.+..+-+++| .+...+.++ .+.+ +.+|++.++.=+.......+.+....-.+.++..
T Consensus 45 ~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG-~aai~~~~~-~l~~-Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 45 SRTGNPTRAALEELIAVLEGGHAGFAFGSG-MAAITAVMM-LFSS-GDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred CCCCChHHHHHHHHHHHHhCCCceEEeCCH-HHHHHHHHH-HhCC-CCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 356788899999999998877776667764 444433333 3444 7889887765122344333333322123444433
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.+...+|++..+....-....++.+.+. .+..|..+|+||++..
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~l--a~~~g~~lvvD~a~~~ 175 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTI--AKEKGLLTIVDNTFMT 175 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHH--HHHcCCEEEEECCCCc
Confidence 4455443334567899987665111011122333332 2234899999999753
No 303
>PLN02740 Alcohol dehydrogenase-like
Probab=94.23 E-value=0.67 Score=42.08 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=62.5
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEE--cchhhhhhhc-CC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVK--GDAQKLLMGD-YR 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~--gda~~~L~~~-~~ 111 (220)
+...+.++||-+|+|++|..++.+|++. +. +|++++.+ +++.+.|++. |....+.... .+..+.+..+ .+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~---G~~~Vi~~~~~-~~r~~~a~~~--Ga~~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR---GASKIIGVDIN-PEKFEKGKEM--GITDFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC---CCCcEEEEcCC-hHHHHHHHHc--CCcEEEecccccchHHHHHHHHhCC
Confidence 3445678999999988999999999875 45 79999999 9999988763 3211122111 1233333222 23
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.+|++| |+-- . ...++..... +++.+|.++.-..
T Consensus 268 g~dvvi-d~~G--~--~~~~~~a~~~--~~~g~G~~v~~G~ 301 (381)
T PLN02740 268 GVDYSF-ECAG--N--VEVLREAFLS--THDGWGLTVLLGI 301 (381)
T ss_pred CCCEEE-ECCC--C--hHHHHHHHHh--hhcCCCEEEEEcc
Confidence 699765 5543 1 2345555555 5443266655443
No 304
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.18 E-value=0.061 Score=49.50 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=76.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
...++.+++++||| +|-.+..++.- ....++.++.+ +..+..+..... .+.++-.++.+|..+-. .-++.||
T Consensus 107 ~~~~~~~~~~~~~g-~~~~~~~i~~f---~~~~~~Gl~~n-~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd 180 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTG-VGGPSRYIAVF---KKAGVVGLDNN-AYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFD 180 (364)
T ss_pred cCcccccccccCcC-cCchhHHHHHh---ccCCccCCCcC-HHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccC
Confidence 34555679999997 78777777764 15788888888 666655555443 55555555777776632 3257899
Q ss_pred EE-EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FV-LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~V-fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++ |+|......+....+..+.+. ++| ||+.++....
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv--~kp-GG~~i~~e~i 217 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRV--LKP-GGLFIVKEWI 217 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcc--cCC-CceEEeHHHH
Confidence 88 677766557888889999998 876 9999998765
No 305
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.18 E-value=1.2 Score=38.46 Aligned_cols=99 Identities=20% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~ 115 (220)
.+.+.||-+|+|.+|..++.+|++. +. +|+.++.+ +++.+.|++. |....+.. .+..+.+..+ ...+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~---G~~~Vi~~~~~-~~r~~~a~~~--Ga~~~i~~--~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA---GAARVVAADPS-PDRRELALSF--GATALAEP--EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHc--CCcEecCc--hhhHHHHHHHhCCCCCCE
Confidence 3567899999988999999999875 44 48999999 8888888774 22111111 1111222122 246898
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+| |+-- . ...++.+.+. +++ ||.++.-...
T Consensus 191 vi-d~~G--~--~~~~~~~~~~--l~~-~G~iv~~G~~ 220 (280)
T TIGR03366 191 AL-EFSG--A--TAAVRACLES--LDV-GGTAVLAGSV 220 (280)
T ss_pred EE-ECCC--C--hHHHHHHHHH--hcC-CCEEEEeccC
Confidence 76 5542 1 2356666666 665 6666655443
No 306
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.13 E-value=0.36 Score=41.35 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=61.8
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+..+.| +-.++..|-...+...|-|+||| - ..||.+++. .-+|.+.|.- .. .+. ++..
T Consensus 54 ~WP~nP-vd~iI~~l~~~~~~~viaD~GCG-d----A~la~~~~~-~~~V~SfDLv-a~------------n~~--Vtac 111 (219)
T PF05148_consen 54 KWPVNP-VDVIIEWLKKRPKSLVIADFGCG-D----AKLAKAVPN-KHKVHSFDLV-AP------------NPR--VTAC 111 (219)
T ss_dssp TSSS-H-HHHHHHHHCTS-TTS-EEEES-T-T-----HHHHH--S----EEEEESS--S------------STT--EEES
T ss_pred cCCCCc-HHHHHHHHHhcCCCEEEEECCCc-h----HHHHHhccc-CceEEEeecc-CC------------CCC--EEEe
Confidence 445555 45666666555555789999997 3 355666654 4479999998 21 123 3445
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|... +|--.+..|+++.--..=..+|.++++.+.+. |++ ||.+.+-.|-++
T Consensus 112 dia~-vPL~~~svDv~VfcLSLMGTn~~~fi~EA~Rv--LK~-~G~L~IAEV~SR 162 (219)
T PF05148_consen 112 DIAN-VPLEDESVDVAVFCLSLMGTNWPDFIREANRV--LKP-GGILKIAEVKSR 162 (219)
T ss_dssp -TTS--S--TT-EEEEEEES---SS-HHHHHHHHHHH--EEE-EEEEEEEEEGGG
T ss_pred cCcc-CcCCCCceeEEEEEhhhhCCCcHHHHHHHHhe--ecc-CcEEEEEEeccc
Confidence 5533 34325789999866554446899999999999 987 777777777764
No 307
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.05 E-value=1.7 Score=32.29 Aligned_cols=83 Identities=20% Similarity=0.184 Sum_probs=54.9
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEE-EeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVC-ILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~t-IE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|.-||+|..|..-+.-.....+ +-++++ +|++ ++..+.+.+.+. +. ...|..+.+.. ..+|+|+|-.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~-~~~v~~v~d~~-~~~~~~~~~~~~-----~~-~~~~~~~ll~~--~~~D~V~I~tp 71 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP-DFEVVAVCDPD-PERAEAFAEKYG-----IP-VYTDLEELLAD--EDVDAVIIATP 71 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT-TEEEEEEECSS-HHHHHHHHHHTT-----SE-EESSHHHHHHH--TTESEEEEESS
T ss_pred EEEEECCcHHHHHHHHHHHhcCC-CcEEEEEEeCC-HHHHHHHHHHhc-----cc-chhHHHHHHHh--hcCCEEEEecC
Confidence 57778987444433322222222 556664 7888 877776654432 23 67778887754 57999999999
Q ss_pred CCCccHHHHHHHHHhh
Q 042616 122 IDIDGHKNVFRAAKES 137 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~ 137 (220)
. ....++...+.+.
T Consensus 72 ~--~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 72 P--SSHAEIAKKALEA 85 (120)
T ss_dssp G--GGHHHHHHHHHHT
T ss_pred C--cchHHHHHHHHHc
Confidence 8 8888888888876
No 308
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=94.05 E-value=0.12 Score=44.67 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=44.6
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHH--HHHHHHhc--ccCCcEEEEEcchhhhhhhc----C-CCccEEEE
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDI--DASKKSLG--RYANCIEFVKGDAQKLLMGD----Y-RGADFVLI 118 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~--~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~----~-~~~D~Vfi 118 (220)
||+|-+|+. ||.++...|++|.-||-| |..- +.++...+ .+.+++++..++-...+... . ..|||||+
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaD-pn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~Vlv 89 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDAD-PNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLV 89 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCC-CCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEE
Confidence 458888876 555565458999999999 6653 33222222 34556777665433333221 2 46999999
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
|..-
T Consensus 90 DleG 93 (231)
T PF07015_consen 90 DLEG 93 (231)
T ss_pred eCCC
Confidence 9864
No 309
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.01 E-value=0.49 Score=42.66 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHH---HHHHhcccCCcEEEEEc----chh----hhh
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDA---SKKSLGRYANCIEFVKG----DAQ----KLL 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~---Ar~~l~g~~~~Ve~v~g----da~----~~L 106 (220)
++..|+-+|..|+|=+|+. ||..+.+.+++|.=++.| ..+... .+..... ..+.++.. |+. +.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D-~~r~~a~eql~~~a~~--~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD-TFRAAAIEQLQVWGER--VGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC-ccchhhHHHHHHHHHH--cCceEEEeCCCCCHHHHHHHHH
Confidence 4567778898669999886 666666667888777777 644322 2222211 12444432 221 212
Q ss_pred h-hcCCCccEEEEcCCC
Q 042616 107 M-GDYRGADFVLIDCNI 122 (220)
Q Consensus 107 ~-~~~~~~D~VfiD~~k 122 (220)
. .....||+|+||.+-
T Consensus 190 ~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 190 QAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 1 124689999999987
No 310
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.97 E-value=1 Score=40.62 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=63.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc--chhhhhhhc-CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG--DAQKLLMGD-YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g--da~~~L~~~-~~~ 112 (220)
...+.+.||-+|+|++|..++.+|+++ +. +|++++.+ +++.+.+++ + |....+..... +..+.+..+ .+.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~---G~~~vi~~~~~-~~~~~~~~~-l-Ga~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAA---GASRIIGIDIN-PDKFELAKK-F-GATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-c-CCCEEEcccccchHHHHHHHHHhCCC
Confidence 345678999999988999999999875 45 79999999 888888865 2 32111222211 233333222 247
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|+|| |+-- . ...+..+... +++.+|.++.-...
T Consensus 257 ~d~vi-d~~g--~--~~~~~~a~~~--l~~~~G~~v~~g~~ 290 (368)
T cd08300 257 VDYTF-ECIG--N--VKVMRAALEA--CHKGWGTSVIIGVA 290 (368)
T ss_pred CcEEE-ECCC--C--hHHHHHHHHh--hccCCCeEEEEccC
Confidence 99876 5543 1 2355666666 65532666654433
No 311
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.97 E-value=0.6 Score=34.76 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=54.7
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEEEc
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVLID 119 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~VfiD 119 (220)
|+-+| .|..+..+++.+.+ .+ +|+-||.| ++..+.++.. .+.++.||+.+ .|.+. ....|.+++.
T Consensus 1 vvI~G---~g~~~~~i~~~L~~-~~~~vvvid~d-~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIG---YGRIGREIAEQLKE-GGIDVVVIDRD-PERVEELREE------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES----SHHHHHHHHHHHH-TTSEEEEEESS-HHHHHHHHHT------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEc---CCHHHHHHHHHHHh-CCCEEEEEECC-cHHHHHHHhc------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 34456 35677788888887 66 89999999 8888777663 27799999864 45443 3679999998
Q ss_pred CCCCCccH-HHHHHHHHhh
Q 042616 120 CNIDIDGH-KNVFRAAKES 137 (220)
Q Consensus 120 ~~k~~~~y-~~~l~~l~~~ 137 (220)
.+. ... ......++..
T Consensus 70 ~~~--d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 70 TDD--DEENLLIALLAREL 86 (116)
T ss_dssp SSS--HHHHHHHHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHHH
Confidence 876 332 3344455543
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.96 E-value=0.66 Score=40.82 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHH---HHHHhcccCCcEEEEEc----chhhh----h
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDA---SKKSLGRYANCIEFVKG----DAQKL----L 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~---Ar~~l~g~~~~Ve~v~g----da~~~----L 106 (220)
+++.|+-+|.+|+|-+|.. ||..+.+.+.+|.-|+.| ..+... .+...+. ..+.++.. |..+. +
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~--~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD-TFRAAAIEQLEEWAKR--LGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC-CCCHHHHHHHHHHHHh--CCeEEEeCCCCCCHHHHHHHHH
Confidence 3566777787669998865 666666656788778877 644332 2222221 12555432 22221 2
Q ss_pred hhc-CCCccEEEEcCCCCCccHHHHH---HHHHhhcCCC------CCCEEEEEecCCCCCCcc---ceEEEeeecCCcEE
Q 042616 107 MGD-YRGADFVLIDCNIDIDGHKNVF---RAAKESVMHG------SGAGVIVGYNALPKGSWR---GYKTHFLPIGEGLL 173 (220)
Q Consensus 107 ~~~-~~~~D~VfiD~~k~~~~y~~~l---~~l~~~~~L~------~~Ggviv~dNv~~~g~~~---~~~s~~lPig~Gl~ 173 (220)
... ...||+|++|.+-+...-...+ +.+.+. +. |.+.++|.+-........ .|...+ ++ +|+.
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~--~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-~~-~g~I 223 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRV--IKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-GL-TGII 223 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHH--HhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-CC-CEEE
Confidence 111 3679999999987222112333 333332 22 556666666442221111 222211 22 6777
Q ss_pred EEEEeec
Q 042616 174 VTRIGEN 180 (220)
Q Consensus 174 v~~~~~~ 180 (220)
++....+
T Consensus 224 lTKlDe~ 230 (272)
T TIGR00064 224 LTKLDGT 230 (272)
T ss_pred EEccCCC
Confidence 7766543
No 313
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=93.93 E-value=0.46 Score=41.18 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=27.7
Q ss_pred CCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHH
Q 042616 40 NAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 40 ~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
+++.|.-.++ |+.|-+|+. ||.++...|.+|.-||.| ...-
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D-~~~~ 145 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN-LRDP 145 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC-CCCc
Confidence 3444544433 457877764 788877767899999998 6543
No 314
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.91 E-value=0.87 Score=36.51 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=55.0
Q ss_pred EEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEc----chhhhh----h-hcCC
Q 042616 44 IVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKG----DAQKLL----M-GDYR 111 (220)
Q Consensus 44 ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~g----da~~~L----~-~~~~ 111 (220)
++-.|..++|-+|+. ++..+.+.+.+|..|+.| ..+....++... .....+.+... +..+++ . ....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD-TYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC-CCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 344576558888885 454454546788888888 655443332221 11123444332 333222 1 1135
Q ss_pred CccEEEEcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 112 GADFVLIDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 112 ~~D~VfiD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
.+|+|++|.+.... .....+..+... ..+.+.++|++.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~--~~~~~~~lVv~~ 122 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRV--VKPDEVLLVVDA 122 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhh--cCCCeEEEEEEC
Confidence 79999999987211 223333444443 345556666664
No 315
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.91 E-value=0.42 Score=43.90 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.++.+|+-+|+|.+|..++..+.++ +.+|+.+|.+ ++..+.+...+. ..+.....+..+ +......+|+|+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~-~~~~~~l~~~~g---~~v~~~~~~~~~-l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL---GATVTILDIN-IDRLRQLDAEFG---GRIHTRYSNAYE-IEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECC-HHHHHHHHHhcC---ceeEeccCCHHH-HHHHHccCCEEEE
Confidence 3567799999988888888887765 5689999999 887766655443 123222233333 3233457899996
Q ss_pred cC
Q 042616 119 DC 120 (220)
Q Consensus 119 D~ 120 (220)
-.
T Consensus 237 a~ 238 (370)
T TIGR00518 237 AV 238 (370)
T ss_pred cc
Confidence 54
No 316
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.90 E-value=0.87 Score=41.42 Aligned_cols=109 Identities=16% Similarity=0.057 Sum_probs=72.7
Q ss_pred HHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhhhhc-CC
Q 042616 35 LAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~-~~ 111 (220)
-|...+...+.-+|.|++|.+.+.-|++.. .+|+++||.| ++..+.|++.=. -+..+ ++ .....+.+.++ .+
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G--AsrIIgvDiN-~~Kf~~ak~fGaTe~iNp~-d~-~~~i~evi~EmTdg 261 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG--ASRIIGVDIN-PDKFEKAKEFGATEFINPK-DL-KKPIQEVIIEMTDG 261 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcC--cccEEEEecC-HHHHHHHHhcCcceecChh-hc-cccHHHHHHHHhcC
Confidence 455667788888888889998888888765 4899999999 999999998632 11111 11 22567777665 57
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCC-EEEEEecCCCCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGA-GVIVGYNALPKG 156 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~G-gviv~dNv~~~g 156 (220)
.+|+-|=-... .+.++++... .. +| |.-|.-.+..++
T Consensus 262 GvDysfEc~G~-----~~~m~~al~s--~h-~GwG~sv~iGv~~~~ 299 (375)
T KOG0022|consen 262 GVDYSFECIGN-----VSTMRAALES--CH-KGWGKSVVIGVAAAG 299 (375)
T ss_pred CceEEEEecCC-----HHHHHHHHHH--hh-cCCCeEEEEEecCCC
Confidence 89999843333 3455666655 33 35 665555555443
No 317
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.89 E-value=0.3 Score=46.94 Aligned_cols=45 Identities=7% Similarity=0.000 Sum_probs=38.4
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
..++.+++-+|+|.+|..++.++.++ |.+|+.+|.+ +++.+.++.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~l---GA~V~v~d~~-~~rle~a~~ 205 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSL---GAIVRAFDTR-PEVKEQVQS 205 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHH
Confidence 45678999999998999999888875 5689999999 888888886
No 318
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=93.89 E-value=0.4 Score=40.63 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=24.7
Q ss_pred EEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 43 LIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
.|.-.++ ||+|-+|+. ||.++...+-+|.-||.| +.
T Consensus 3 ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D-~~ 41 (261)
T TIGR01968 3 VIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDAD-IG 41 (261)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECC-CC
Confidence 3433333 568888765 676666656789999999 75
No 319
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.86 E-value=0.39 Score=42.71 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=60.7
Q ss_pred CEEEEEcCCchHHH-HHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH--hc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 42 QLIVMACSSIAVSR-TLALVAAARQTGGRVVCILSGVIGDIDASKKS--LG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 42 ~~ILEIGtg~~G~s-Tl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~--l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+|+-+|+|+.|.. +..|+++ +..|+.+... ++.++..++. +. .......+.. .... +...++||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~----G~~V~lv~r~-~~~~~~i~~~~Gl~i~~~g~~~~~~~-~~~~--~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA----GLPVRLILRD-RQRLAAYQQAGGLTLVEQGQASLYAI-PAET--ADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC----CCCeEEEEec-hHHHHHHhhcCCeEEeeCCcceeecc-CCCC--cccccccCEE
Confidence 46888999877754 3335543 5679999998 7667666542 22 1111111111 0100 1113589999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|+-... -+..+.++.+.+. +.++.-+|..-|-+-
T Consensus 75 iv~vK~--~~~~~al~~l~~~--l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 75 LLACKA--YDAEPAVASLAHR--LAPGAELLLLQNGLG 108 (305)
T ss_pred EEECCH--HhHHHHHHHHHhh--CCCCCEEEEEeCCCC
Confidence 998876 5567888999988 776555566666664
No 320
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.84 E-value=0.057 Score=51.40 Aligned_cols=100 Identities=9% Similarity=-0.069 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhcCCCccEEE-
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGDYRGADFVL- 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~~~~~D~Vf- 117 (220)
.-+.+||+||| +|.++..|..- +=..+|+-++ ...-...+-.++ |+...+-+. +..-||.-.+.||+|-
T Consensus 117 ~iR~~LDvGcG-~aSF~a~l~~r----~V~t~s~a~~-d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 117 GIRTALDVGCG-VASFGAYLLER----NVTTMSFAPN-DEHEAQVQFALERGVPAMIGVL---GSQRLPFPSNAFDMVHC 187 (506)
T ss_pred ceEEEEeccce-eehhHHHHhhC----CceEEEcccc-cCCchhhhhhhhcCcchhhhhh---ccccccCCccchhhhhc
Confidence 34677999996 99999988862 3344555554 222222222222 432111111 2333555457899983
Q ss_pred ---EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 ---IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 ---iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+..+. ..-.-+|-.+.+. |+| ||++|-...-
T Consensus 188 src~i~W~--~~~g~~l~evdRv--LRp-GGyfv~S~pp 221 (506)
T PF03141_consen 188 SRCLIPWH--PNDGFLLFEVDRV--LRP-GGYFVLSGPP 221 (506)
T ss_pred ccccccch--hcccceeehhhhh--hcc-CceEEecCCc
Confidence 22222 1112355566666 776 9998776543
No 321
>PRK10083 putative oxidoreductase; Provisional
Probab=93.63 E-value=1.5 Score=38.52 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=59.0
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-.|+|++|..++.+|+++.- ...+++++.+ +++.+.+++. |...-+.....+..+.++.....+| +
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~-~~~~~~~~~~--Ga~~~i~~~~~~~~~~~~~~g~~~d-~ 231 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRI-DERLALAKES--GADWVINNAQEPLGEALEEKGIKPT-L 231 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCC-HHHHHHHHHh--CCcEEecCccccHHHHHhcCCCCCC-E
Confidence 34557789889988899988888886311 2468889999 8888887763 2211122222233344432112244 5
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++|+-- . ...+..+.+. |++ +|.++.-
T Consensus 232 vid~~g--~--~~~~~~~~~~--l~~-~G~~v~~ 258 (339)
T PRK10083 232 IIDAAC--H--PSILEEAVTL--ASP-AARIVLM 258 (339)
T ss_pred EEECCC--C--HHHHHHHHHH--hhc-CCEEEEE
Confidence 667654 2 2345555565 655 5555543
No 322
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=93.61 E-value=0.44 Score=40.16 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=22.8
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
||+|-||+. ||.++...+-+|.-||.| ++
T Consensus 10 GGvGKTt~a~~LA~~la~~g~~VlliD~D-~~ 40 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLALDAD-IT 40 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCC-CC
Confidence 568888876 777776656789999999 74
No 323
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=93.57 E-value=2.4 Score=38.45 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=71.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+.-.|...+|-..+++..+.+..+-.++| . .++.++.++-..+.+|++.++.=+......+..+....-++.++..
T Consensus 48 r~~~pt~~~le~~la~l~g~~~~~~~~sG-~--~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 124 (366)
T PRK08247 48 RTGNPTRGVLEQAIADLEGGDQGFACSSG-M--AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124 (366)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEcCH-H--HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC
Confidence 45678888999999998887766655543 3 3333333333337888887764233333344444322123444432
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+....++||+..+....-....++.+.+. .+..|..||+||++.
T Consensus 125 d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~l--a~~~g~~lIvD~t~~ 176 (366)
T PRK08247 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKI--AKKHGLLLIVDNTFY 176 (366)
T ss_pred CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCCc
Confidence 4444333333567999986655111112334444443 333589999999974
No 324
>PRK08064 cystathionine beta-lyase; Provisional
Probab=93.54 E-value=1.6 Score=40.19 Aligned_cols=127 Identities=10% Similarity=0.014 Sum_probs=70.2
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHH-HcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVA-AARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~-A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.+...|...+|-..++...+++..+-+++ |.+++.++. .+.+ +.+|++.++.=+.......+.++...-++.++.
T Consensus 49 ~r~~~p~~~~le~~lA~l~g~~~~v~~~s---G~~ai~~~l~~l~~-Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~ 124 (390)
T PRK08064 49 SRSGNPTREALEDIIAELEGGTKGFAFAS---GMAAISTAFLLLSK-GDHVLISEDVYGGTYRMITEVLSRFGIEHTFVD 124 (390)
T ss_pred cCCCChhHHHHHHHHHHHhCCCCeEEECC---HHHHHHHHHHHhCC-CCEEEEccCccchHHHHHHHHHHHcCCEEEEEC
Confidence 35577888999999998877666665665 444444333 4554 788888776412233333333331212344443
Q ss_pred c-chhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 G-DAQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 g-da~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
. |..++...+....++|++..+... .... -++.+.+. .+..|.++|+|++..
T Consensus 125 ~~d~~~l~~~l~~~tklV~l~~p~NptG~~~-dl~~I~~l--a~~~g~~vvvD~a~~ 178 (390)
T PRK08064 125 MTNLEEVAQNIKPNTKLFYVETPSNPLLKVT-DIRGVVKL--AKAIGCLTFVDNTFL 178 (390)
T ss_pred CCCHHHHHHhcCCCceEEEEECCCCCCcEec-cHHHHHHH--HHHcCCEEEEECCCC
Confidence 2 444443333356799998876511 2221 12223222 223489999999864
No 325
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=93.52 E-value=0.4 Score=35.07 Aligned_cols=29 Identities=31% Similarity=0.150 Sum_probs=21.6
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
|++|-+|+. ||..+.+.+.++..+|.| +.
T Consensus 9 gG~Gkst~~~~la~~~~~~~~~vl~~d~d-~~ 39 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRGKRVLLIDLD-PQ 39 (104)
T ss_pred CCcCHHHHHHHHHHHHHhCCCcEEEEeCC-CC
Confidence 458888865 666666557799999999 65
No 326
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.50 E-value=0.84 Score=40.40 Aligned_cols=101 Identities=15% Similarity=0.068 Sum_probs=70.3
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcc------------------------------
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGR------------------------------ 90 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g------------------------------ 90 (220)
..+||.-||| .|-.+.-+|.. |-.+.+.|.+ --++-...-.+..
T Consensus 57 ~~~VLVPGsG-LGRLa~Eia~~----G~~~~gnE~S-~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 57 KIRVLVPGSG-LGRLAWEIAKL----GYAVQGNEFS-YFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred ccEEEEcCCC-cchHHHHHhhc----cceEEEEEch-HHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 5789999996 99988888864 6789999998 7665433332220
Q ss_pred -----------cCCcEEEEEcchhhhhhhc--CCCccEE----EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 91 -----------YANCIEFVKGDAQKLLMGD--YRGADFV----LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 91 -----------~~~~Ve~v~gda~~~L~~~--~~~~D~V----fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
..++..+..||..++-+.- .+.||.| |||... +..+|++.+... |+| ||+-|--.-+
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~---Ni~~Yi~tI~~l--Lkp-gG~WIN~GPL 204 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE---NIIEYIETIEHL--LKP-GGYWINFGPL 204 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH---HHHHHHHHHHHH--hcc-CCEEEecCCc
Confidence 0123455666766655432 2589988 799975 889999999998 886 8866654443
No 327
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.50 E-value=0.25 Score=41.99 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=68.8
Q ss_pred HHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-H---HHHHH--Hh-cccCCcEEEEEcc
Q 042616 29 GEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-I---DASKK--SL-GRYANCIEFVKGD 101 (220)
Q Consensus 29 ~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~---~~Ar~--~l-~g~~~~Ve~v~gd 101 (220)
+|.|. ++-..+...|+|+.-| -||+|-.|+.++.+ .|+|+++-++ +.. . +..+. .. +....|++.+-++
T Consensus 38 ~E~L~-FaGlkpg~tVid~~PG-gGy~TrI~s~~vgp-~G~Vy~~~p~-e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~ 113 (238)
T COG4798 38 GEVLA-FAGLKPGATVIDLIPG-GGYFTRIFSPAVGP-KGKVYAYVPA-ELTKFAKREGPRLNAAAREPVYANVEVIGKP 113 (238)
T ss_pred cceeE-EeccCCCCEEEEEecC-CccHhhhhchhcCC-ceeEEEecch-hhcccccchhhhhhhhhhhhhhhhhhhhCCc
Confidence 45553 3456677899999986 79999999999988 6799999888 331 1 10111 11 1111344444333
Q ss_pred hhhhhhhcCCCccEEEE--------cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 102 AQKLLMGDYRGADFVLI--------DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 102 a~~~L~~~~~~~D~Vfi--------D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
..... ...+.|+++. -.+.....-..+...+.+. |+|.|-++|.|..-.+|
T Consensus 114 ~~A~~--~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~--LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 114 LVALG--APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKA--LKPGGVYLVEDHRADPG 172 (238)
T ss_pred ccccC--CCCcccccccchhhhhhhccccCcchHHHHHHHHHHh--cCCCcEEEEEeccccCC
Confidence 22211 1123444432 2222213446778888888 88845556777666665
No 328
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.45 E-value=0.76 Score=40.03 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=29.2
Q ss_pred EEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHH
Q 042616 43 LIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDI 81 (220)
Q Consensus 43 ~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~ 81 (220)
.|.-.|. ||+|.+|+. ||.++...|-+|++||.| |+.+
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d-pqN~ 43 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD-PQNL 43 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC-cHHH
Confidence 3444454 568888774 888898878899999999 8876
No 329
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.42 E-value=1.4 Score=41.39 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
...++|+-+|+|.+|...+.+++++ |.+|+.+|.+ +.+.+.|+.. |. +.+ +..+.+ ..+|+||.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~---Ga~ViV~d~d-~~R~~~A~~~--G~----~~~--~~~e~v----~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ---GARVIVTEVD-PICALQAAME--GY----EVM--TMEEAV----KEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC-hhhHHHHHhc--CC----EEc--cHHHHH----cCCCEEEE
Confidence 3578999999988888887777764 6789999999 9888887763 32 111 123333 35798874
Q ss_pred cCCCCCccHHHHHHHH-HhhcCCCCCCEEEEEec
Q 042616 119 DCNIDIDGHKNVFRAA-KESVMHGSGAGVIVGYN 151 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l-~~~~~L~~~Ggviv~dN 151 (220)
+.- ....++.. ... ++ +||+|+.-.
T Consensus 264 -atG----~~~~i~~~~l~~--mk-~GgilvnvG 289 (413)
T cd00401 264 -TTG----NKDIITGEHFEQ--MK-DGAIVCNIG 289 (413)
T ss_pred -CCC----CHHHHHHHHHhc--CC-CCcEEEEeC
Confidence 433 13345543 555 55 488876543
No 330
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.30 E-value=1.5 Score=36.49 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhh-hhcCCCccEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLL-MGDYRGADFVL 117 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L-~~~~~~~D~Vf 117 (220)
.+.++||..|++++|..++.++.+. +.+|+.++.+ ++..+.++.. +....+.....+..+.+ .....++|++|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA---GARVIVTDRS-DEKLELAKEL--GADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEcCC-HHHHHHHHHh--CCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 5678999999865677777777764 6799999999 8887777553 11111221122222211 11136799988
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
- +-. . ...++.+.+. +++ +|.++.
T Consensus 207 ~-~~~--~--~~~~~~~~~~--l~~-~G~~v~ 230 (271)
T cd05188 207 D-AVG--G--PETLAQALRL--LRP-GGRIVV 230 (271)
T ss_pred E-CCC--C--HHHHHHHHHh--ccc-CCEEEE
Confidence 4 332 1 1345555665 655 555554
No 331
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.28 E-value=0.51 Score=36.85 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=57.0
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH-Hhc--ccCCc--EEEEEcchhhhhhhcCCCccEEEE
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK-SLG--RYANC--IEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~-~l~--g~~~~--Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
|+-+|+|+.|..-.+ .+.+.+-.|+.+... + .++..++ -+. ..... +.....-... +....++|+||+
T Consensus 1 I~I~G~GaiG~~~a~---~L~~~g~~V~l~~r~-~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAA---RLAQAGHDVTLVSRS-P-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHH---HHHHTTCEEEEEESH-H-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHH---HHHHCCCceEEEEcc-c-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEE
Confidence 566787766654443 232236689999988 6 5554333 222 11111 2111111111 111378999999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
-..- .+..+.++.+.+. +.++.-+++..|-+-
T Consensus 74 ~vKa--~~~~~~l~~l~~~--~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 74 AVKA--YQLEQALQSLKPY--LDPNTTIVSLQNGMG 105 (151)
T ss_dssp -SSG--GGHHHHHHHHCTG--EETTEEEEEESSSSS
T ss_pred Eecc--cchHHHHHHHhhc--cCCCcEEEEEeCCCC
Confidence 9876 7778899999998 766435666666553
No 332
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=93.26 E-value=1.3 Score=39.19 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=61.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
...+.++||-.|+|++|..++.+|++.. ..+|++++.+ +++.+.+++. +...-+.....+..+.+..+ ..++|
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G--~~~v~~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS--PSKIIMVDLD-DNRLEVAKKL--GATHTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCC-HHHHHHHHHh--CCCceeccccccHHHHHHHHhCCCCCC
Confidence 3455678877888889998888888753 1689999999 7777777653 32222333333332222222 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++| |+-- . ...++.+.+. |++ +|.++.-
T Consensus 238 ~vl-d~~g--~--~~~~~~~~~~--l~~-~g~~v~~ 265 (345)
T cd08286 238 VVI-EAVG--I--PATFELCQEL--VAP-GGHIANV 265 (345)
T ss_pred EEE-ECCC--C--HHHHHHHHHh--ccC-CcEEEEe
Confidence 776 6643 1 2346777676 765 6666543
No 333
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.21 E-value=1.4 Score=39.20 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=62.5
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-C-CCc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-Y-RGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~-~~~ 113 (220)
...+.++||-.|+|++|..++.+|++. +. +|+.++.+ ++..+.+++. |....+.....+..+.+... . ..+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~~~-~~~~~~~~~~--ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA---GASKIIVSEPS-EARRELAEEL--GATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC-HHHHHHHHHh--CCCEEECCCccCHHHHHHHHhCCCCC
Confidence 344568888889888999999899875 44 89999988 8888887653 32111222223333323222 2 359
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|+++ |+-- -...++.+.+. |++ ||.++.-...
T Consensus 243 d~vi-d~~g----~~~~~~~~~~~--l~~-~G~~v~~g~~ 274 (351)
T cd08233 243 DVSF-DCAG----VQATLDTAIDA--LRP-RGTAVNVAIW 274 (351)
T ss_pred CEEE-ECCC----CHHHHHHHHHh--ccC-CCEEEEEccC
Confidence 9886 3322 12345666666 655 6666654443
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=93.18 E-value=0.72 Score=43.47 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCC-CcEEEEEeCCchhHHHHHHH---HhcccCCcEEEEE----cchhhhhhhc-
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQT-GGRVVCILSGVIGDIDASKK---SLGRYANCIEFVK----GDAQKLLMGD- 109 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~-~grV~tIE~d~~~~~~~Ar~---~l~g~~~~Ve~v~----gda~~~L~~~- 109 (220)
|..|+-+|..|+|=+|.. ||..+... +.+|.-|+.| ..+.....+ ..+. ..|.++. .|+.++....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D-~~R~aa~eQL~~~a~~--~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD-VYRPAAIEQLKTLGEQ--IGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc-ccchHHHHHHHHHHhh--cCCeEEecCCCCCHHHHHHHHH
Confidence 567788887669998865 66555554 5567666666 444433222 2221 2244433 2554444211
Q ss_pred ----CCCccEEEEcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 110 ----YRGADFVLIDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 110 ----~~~~D~VfiD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
...+|+|++|.+-+.. .....+..+... +.|..-++|.|..
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~--v~p~evllVlda~ 224 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA--VNPDEILLVVDAM 224 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh--hCCCeEEEEEecc
Confidence 3579999999987221 223344555555 5676667777754
No 335
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.18 E-value=1 Score=39.57 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=59.8
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
...+.++||..|+|++|..++.+|++.. ..++++++.+ +++.+.+++. +....+.....+..+.+... ...+|
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g--~~~v~~~~~~-~~~~~~~~~~--g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG--AARIIAVDSN-PERLDLAKEA--GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEeCC-HHHHHHHHHh--CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 3455678887787778888888888752 1489999888 7777776653 21111222223333333222 25799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++| |+-. . ...++...+. |++ +|.++.-
T Consensus 239 ~vl-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~ 266 (347)
T cd05278 239 CVI-EAVG--F--EETFEQAVKV--VRP-GGTIANV 266 (347)
T ss_pred EEE-EccC--C--HHHHHHHHHH--hhc-CCEEEEE
Confidence 776 6543 2 1355666666 655 6666644
No 336
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=93.18 E-value=1.4 Score=38.80 Aligned_cols=98 Identities=19% Similarity=0.188 Sum_probs=60.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
...+.++||-.|+|.+|..++.+|++. +.+|+.++.+ ++..+.+++ + |....+.....+..+.+..+ ..+|++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~---G~~vi~~~~~-~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~-~~~d~v 232 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM---GFRTVAISRG-SDKADLARK-L-GAHHYIDTSKEDVAEALQEL-GGAKLI 232 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCC-hHHHHHHHH-c-CCcEEecCCCccHHHHHHhc-CCCCEE
Confidence 345568899889888999998899875 5689999999 888887755 2 22111222222333333332 468988
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ |+.- ....++.+.+. +++ +|.++.
T Consensus 233 i-~~~g----~~~~~~~~~~~--l~~-~G~~v~ 257 (333)
T cd08296 233 L-ATAP----NAKAISALVGG--LAP-RGKLLI 257 (333)
T ss_pred E-ECCC----chHHHHHHHHH--ccc-CCEEEE
Confidence 7 5531 12355666666 655 555553
No 337
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.14 E-value=0.65 Score=40.60 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------ccCCcE---EEEEcchhhhhhhc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-------RYANCI---EFVKGDAQKLLMGD 109 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-------g~~~~V---e~v~gda~~~L~~~ 109 (220)
+.++|||+|+| +|.-.+..|... +..++.-|.- ...+.-+.+.. .++..+ .++-|++.+....
T Consensus 86 ~~~~vlELGsG-tglvG~~aa~~~---~~~v~ltD~~--~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~- 158 (248)
T KOG2793|consen 86 KYINVLELGSG-TGLVGILAALLL---GAEVVLTDLP--KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR- 158 (248)
T ss_pred cceeEEEecCC-ccHHHHHHHHHh---cceeccCCch--hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc-
Confidence 57889999986 897766555532 4667665553 33333333321 222233 3444666554322
Q ss_pred CCC-ccEEE-EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 110 YRG-ADFVL-IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 110 ~~~-~D~Vf-iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
... +|+|+ .|+--..+.+......+... +...+.++++.
T Consensus 159 ~~~~~DlilasDvvy~~~~~e~Lv~tla~l--l~~~~~i~l~~ 199 (248)
T KOG2793|consen 159 LPNPFDLILASDVVYEEESFEGLVKTLAFL--LAKDGTIFLAY 199 (248)
T ss_pred cCCcccEEEEeeeeecCCcchhHHHHHHHH--HhcCCeEEEEE
Confidence 334 88887 34433334566666666666 54445444554
No 338
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=93.11 E-value=2 Score=39.76 Aligned_cols=128 Identities=20% Similarity=0.105 Sum_probs=72.1
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..+++..+.+..+-.++| +......+...+.+ +.+|++.+..=..........+....-.+.++..
T Consensus 65 ~r~~~p~~~~le~~lA~l~g~~~al~~~sG-~~Ai~~~l~all~~-Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 65 SRYGNPTVSMFEERLRLIEGAEACFATASG-MSAVFTALGALLGA-GDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred eCCCCchHHHHHHHHHHHhCCCcEEEECCh-HHHHHHHHHHHhCC-CCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 356778888999999999998888877754 44433333333444 7788876532012233333333311124555533
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
|..++...+....++|++..+... . +...+.+.+. ..|.++|+||+...+
T Consensus 143 ~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~------~~g~~vivD~a~a~~ 197 (403)
T PRK07810 143 EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAH------AAGAKVVLDNVFATP 197 (403)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHH------HcCCEEEEECCCCcc
Confidence 344433333356789998765511 2 2233333333 348999999997543
No 339
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=93.05 E-value=1.7 Score=38.97 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+.++++-.|+|++|..++.+|++. +.+++.+..+ ++..+.+.+.+ |. +.+ +...+... +......+|++|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~---G~~vi~~~~~-~~~~~~~~~~~-Ga-~~~-i~~~~~~~-~~~~~~~~D~vi- 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM---GHHVTVISSS-DKKREEALEHL-GA-DDY-LVSSDAAE-MQEAADSLDYII- 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC---CCeEEEEeCC-HHHHHHHHHhc-CC-cEE-ecCCChHH-HHHhcCCCcEEE-
Confidence 3567888889888999999999875 5688888888 76665554433 22 211 11112222 222234689776
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- ....++.+... +++ ||.++.-..
T Consensus 250 d~~g----~~~~~~~~~~~--l~~-~G~iv~~G~ 276 (357)
T PLN02514 250 DTVP----VFHPLEPYLSL--LKL-DGKLILMGV 276 (357)
T ss_pred ECCC----chHHHHHHHHH--hcc-CCEEEEECC
Confidence 5533 12345556666 665 666665433
No 340
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.04 E-value=0.61 Score=33.60 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=57.1
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCC---cEEEEE-eCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTG---GRVVCI-LSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~---grV~tI-E~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+|.-||+| -.+..|+..+-..+ .+|+-+ +++ ++..+...+.+. +++...+..+.+. ..|+||+
T Consensus 1 kI~iIG~G---~mg~al~~~l~~~g~~~~~v~~~~~r~-~~~~~~~~~~~~-----~~~~~~~~~~~~~----~advvil 67 (96)
T PF03807_consen 1 KIGIIGAG---NMGSALARGLLASGIKPHEVIIVSSRS-PEKAAELAKEYG-----VQATADDNEEAAQ----EADVVIL 67 (96)
T ss_dssp EEEEESTS---HHHHHHHHHHHHTTS-GGEEEEEEESS-HHHHHHHHHHCT-----TEEESEEHHHHHH----HTSEEEE
T ss_pred CEEEECCC---HHHHHHHHHHHHCCCCceeEEeeccCc-HHHHHHHHHhhc-----cccccCChHHhhc----cCCEEEE
Confidence 35567865 34444555544435 688844 999 888776655542 4555557777763 4799999
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
-.+. ..+.++++.+ +. +. ++.+||.
T Consensus 68 av~p--~~~~~v~~~i-~~--~~-~~~~vis 92 (96)
T PF03807_consen 68 AVKP--QQLPEVLSEI-PH--LL-KGKLVIS 92 (96)
T ss_dssp -S-G--GGHHHHHHHH-HH--HH-TTSEEEE
T ss_pred EECH--HHHHHHHHHH-hh--cc-CCCEEEE
Confidence 9998 8999999999 43 33 4777664
No 341
>PRK07582 cystathionine gamma-lyase; Validated
Probab=93.03 E-value=1.6 Score=39.70 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|-.++++.. +..++-+++| +....+.+...+.+ +.+|++.++........++..+....-++.++.-+
T Consensus 47 ry~~p~~~~Le~~lA~l~-~~~~v~~~sG-~~Ai~~~l~all~~-Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 123 (366)
T PRK07582 47 RASNPTWRALEAALGELE-GAEALVFPSG-MAAITAVLRALLRP-GDTVVVPADGYYQVRALAREYLAPLGVTVREAPTA 123 (366)
T ss_pred CCCCccHHHHHHHHHHHc-CCCEEEECCH-HHHHHHHHHHhcCC-CCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCC
Confidence 446678888888888888 4556656654 43333333333444 78999987762344445554444221234444322
Q ss_pred hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 102 AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 102 a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.... ......++|++..+....-....++.+.+. .+..|.++|+||+..
T Consensus 124 ~~~~--~~~~~t~lV~le~p~NPtg~v~di~~I~~~--a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 124 GMAE--AALAGADLVLAETPSNPGLDVCDLAALAAA--AHAAGALLVVDNTTA 172 (366)
T ss_pred ChHH--HhccCceEEEEECCCCCCCCccCHHHHHHH--HHHcCCEEEEECCCC
Confidence 1111 113467999997665111111123333333 223489999999863
No 342
>PRK10818 cell division inhibitor MinD; Provisional
Probab=93.02 E-value=0.79 Score=39.50 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=22.7
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
||+|-+|+. ||.++.+.+.+|.-||.| +.
T Consensus 12 GGvGKTt~a~nlA~~la~~g~~vllvD~D-~~ 42 (270)
T PRK10818 12 GGVGKTTSSAAIATGLAQKGKKTVVIDFD-IG 42 (270)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEECC-CC
Confidence 668888875 777666657799999999 74
No 343
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.99 E-value=2.1 Score=38.02 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=62.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
...+.++||-.|+|.+|..++.+|++.. ...+++++.+ +++.+.+++. |....+.....+..+.+..+ ...+|
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G--~~~v~~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG--AGRIIAVGSR-PNRVELAKEY--GATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC-HHHHHHHHHc--CCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 3455788988898889999999998763 2469999999 8888887763 22111222122222222122 24699
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++| |+-- . ...+..+.+. |++ +|.++.-++.
T Consensus 238 ~vl-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~g~~ 268 (351)
T cd08285 238 AVI-IAGG--G--QDTFEQALKV--LKP-GGTISNVNYY 268 (351)
T ss_pred EEE-ECCC--C--HHHHHHHHHH--hhc-CCEEEEeccc
Confidence 776 4433 2 2456666776 655 6666655444
No 344
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=92.98 E-value=1.8 Score=39.77 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|.+.+|=..+++..+++.++-.++| +....+.|...+.+ +.+|++.++. -.. ....+. +....-++.++.-
T Consensus 49 r~~np~~~~lE~~lA~l~g~~~~l~~~sG-~~Ai~~~l~~ll~~-GD~Vlv~~~~-y~~~~~~~~~-~~~~g~~v~~~~~ 124 (385)
T PRK08574 49 REENPTLRPLEEALAKLEGGVDALAFNSG-MAAISTLFFSLLKA-GDRVVLPMEA-YGTTLRLLKS-LEKFGVKVVLAYP 124 (385)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEeCCH-HHHHHHHHHHHhCC-CCEEEEcCCC-chhHHHHHHH-hhccCcEEEEECC
Confidence 45677888888888888888878766543 33333334333444 7788776665 332 333332 2311123444444
Q ss_pred chhhhhhhcCC-CccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYR-GADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~-~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.. +.++|++...... -+..++.+.+.+ .|..||+||+..
T Consensus 125 d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~------~gi~livD~t~a 177 (385)
T PRK08574 125 STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKE------LGAILVVDNTFA 177 (385)
T ss_pred CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHH------cCCEEEEECCCC
Confidence 54444333334 6899999765511 233333344333 489999999974
No 345
>PHA02518 ParA-like protein; Provisional
Probab=92.95 E-value=0.37 Score=39.51 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=46.7
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccC-CcEEEEE--cchhhhhhhcCCCccEEEEcCCCCC
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYA-NCIEFVK--GDAQKLLMGDYRGADFVLIDCNIDI 124 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~-~~Ve~v~--gda~~~L~~~~~~~D~VfiD~~k~~ 124 (220)
||+|-+|+. ||.++...+-+|..||.| ++.-........... +.+.... .+..+.+..+...||+|++|++.
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D-~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~p~-- 86 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLD-PQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDGAP-- 86 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCC-CCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEEEeCCC--
Confidence 558888865 667666657899999999 875321111111100 1122221 12233444445789999999987
Q ss_pred ccHHHHHHHHHhh
Q 042616 125 DGHKNVFRAAKES 137 (220)
Q Consensus 125 ~~y~~~l~~l~~~ 137 (220)
. .......+...
T Consensus 87 ~-~~~~~~~~l~~ 98 (211)
T PHA02518 87 Q-DSELARAALRI 98 (211)
T ss_pred C-ccHHHHHHHHH
Confidence 3 33444445444
No 346
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.90 E-value=1.2 Score=40.59 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCc--------------------hhHHHHHHHHhccc--CCcEE
Q 042616 40 NAQLIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGV--------------------IGDIDASKKSLGRY--ANCIE 96 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~--------------------~~~~~~Ar~~l~g~--~~~Ve 96 (220)
+..+|+-||+|+.|...+. |+.+ . -|+++-||.|. ..+++.|++.++.+ .-+|+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-G--vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-G--IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C--CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 4467999999888876664 4443 2 37999999982 12456666666522 23466
Q ss_pred EEEcchh-hhhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQ-KLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~-~~L~~~~~~~D~VfiD~~k 122 (220)
.+..+.. +.+..+...+|+|+.-.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D~ 126 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATDN 126 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCCC
Confidence 6666543 2333445679977654443
No 347
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.85 E-value=4.2 Score=38.28 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc-
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
.-.|.+.+|=..+++..+++..+-..+| +....+.|...+++ |.+|++.... =. -.......+..+.-.+.++..
T Consensus 58 ~~nPtv~~lE~~la~leg~~~av~~~SG-~aAi~~al~all~~-GD~VI~~~~~-Y~~T~~~~~~~l~~~Gi~v~~vd~~ 134 (432)
T PRK06702 58 IGNPTLAAFEQKLAELEGGVGAVATASG-QAAIMLAVLNICSS-GDHLLCSSTV-YGGTFNLFGVSLRKLGIDVTFFNPN 134 (432)
T ss_pred CCCcHHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHhcCC-CCEEEECCCc-hHHHHHHHHHHHHHCCCEEEEECCC
Confidence 4478999999999998888887765533 44444444434554 8899886654 21 122222223322235666654
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCc----cHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDID----GHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~----~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++-..+.+.-.+||+..+-... +...+.+.+.+ .|.++|+||++.
T Consensus 135 ~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~------~gi~livD~T~~ 187 (432)
T PRK06702 135 LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKE------LEVPFIVDNTLA 187 (432)
T ss_pred CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHH------cCCEEEEECCCC
Confidence 3334322223556899987654222 43444444443 489999999873
No 348
>PRK11524 putative methyltransferase; Provisional
Probab=92.83 E-value=0.34 Score=42.68 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=38.5
Q ss_pred CcEEEEEcchhhhhhhc-CCCccEEEEcCCCCC-------------ccH----HHHHHHHHhhcCCCCCCEEEEE
Q 042616 93 NCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDI-------------DGH----KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 93 ~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~-------------~~y----~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+.++++||+.+.+..+ .++||+||.|.+-.. .+| .+++..+.+. |++.|.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rv--LK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRV--LKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHH--hCCCcEEEEE
Confidence 34689999999988665 368999999987310 112 3577888888 8874444444
No 349
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.82 E-value=0.88 Score=42.39 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=59.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhh-----------cC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMG-----------DY 110 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~-----------~~ 110 (220)
++|--||. ||..+.||.++.+.|-+|+.+|.+ ++.++..+. + .+.+...+..+.+.. ..
T Consensus 4 ~kI~VIGl---G~~G~~~A~~La~~G~~V~~~D~~-~~~v~~l~~---g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGL---GYIGLPTAAAFASRQKQVIGVDIN-QHAVDTINR---G---EIHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECc---chhhHHHHHHHHhCCCEEEEEeCC-HHHHHHHHC---C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 56877885 455555555554446789999999 888775322 1 111112222222110 01
Q ss_pred CCccEEEEcCCCCC--------ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 111 RGADFVLIDCNIDI--------DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 111 ~~~D~VfiD~~k~~--------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|+||+--+.+. ......++.+.+. ++ +|.+||......+|
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~--l~-~g~iVI~~STv~pg 124 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPV--LK-KGDLVILESTSPVG 124 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHh--CC-CCCEEEEeCCCCCC
Confidence 35799998776510 1224456777777 65 48888887777777
No 350
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.80 E-value=1.3 Score=39.12 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=55.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCC--cEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTG--GRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~--grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
++|.-||+|..|.+- +.++...+ -+|+.++++ ++..+.+++. +..+ ....+..+.+ ...|+||+-
T Consensus 7 ~~I~IIG~G~mG~sl---a~~l~~~g~~~~V~~~dr~-~~~~~~a~~~--g~~~---~~~~~~~~~~----~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSL---ARAIRRLGLAGEIVGADRS-AETRARAREL--GLGD---RVTTSAAEAV----KGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHH---HHHHHhcCCCcEEEEEECC-HHHHHHHHhC--CCCc---eecCCHHHHh----cCCCEEEEC
Confidence 578889987555533 33333212 389999999 8777666542 3211 1223333333 468999998
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+. .....+++.+.+. +++ |++| +|
T Consensus 74 vp~--~~~~~v~~~l~~~--l~~-~~iv-~d 98 (307)
T PRK07502 74 VPV--GASGAVAAEIAPH--LKP-GAIV-TD 98 (307)
T ss_pred CCH--HHHHHHHHHHHhh--CCC-CCEE-Ee
Confidence 887 6667778888776 644 6644 44
No 351
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.70 E-value=0.18 Score=39.38 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=26.1
Q ss_pred EEcCCchH--HHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH
Q 042616 46 MACSSIAV--SRTLALVAAARQTGGRVVCILSGVIGDIDASKKS 87 (220)
Q Consensus 46 EIGtg~~G--~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~ 87 (220)
|||+. .| .++++++.+....+++|+++|++ |..++..+++
T Consensus 1 DvGA~-~G~~~~~~~~~~~~~~~~~~v~~~Ep~-p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGAN-IGFWSSTVYFLEKKCGPGGRVHAFEPN-PSNFEKLKRN 42 (167)
T ss_dssp EES-T-TS--HHHHHHHHHHTS--SEEEEE----HHHHHHHHHH
T ss_pred CcccC-CChhHHHHHHHHHHcCCCCEEEEEECC-HHHHHHHhHH
Confidence 78985 89 77776653322237999999999 9999988888
No 352
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.67 E-value=0.95 Score=45.14 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=59.1
Q ss_pred CCCCEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc---cc------------------CC
Q 042616 39 NNAQLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKS-LG---RY------------------AN 93 (220)
Q Consensus 39 ~~a~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~---g~------------------~~ 93 (220)
.+++.|.-.++ |+.|-+|+. ||.++...|.+|.-||.| +..-...+.. +. |+ ..
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D-~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 622 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD-GRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAA 622 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC-CCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCC
Confidence 34555555544 558887764 777777767899999999 7643322211 00 11 12
Q ss_pred cEEEEEcch--------------hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 94 CIEFVKGDA--------------QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 94 ~Ve~v~gda--------------~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++.++.+.. .+.+..+...||+|+||++. .........+... .++.++|+.
T Consensus 623 ~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~~~yD~IiID~pp--~~~~~d~~~l~~~----~D~vl~v~~ 687 (754)
T TIGR01005 623 SLPMLDSGLFPHGITELLASPAMFSLVIHARLYSDCVVVDVGT--ADPVRDMRAAARL----AIIMLLVTA 687 (754)
T ss_pred CeeEecCCCCCCCHHHHhccHHHHHHHHHHHhhCCEEEEcCCC--cchhHHHHHhhhh----CCeEEEEEE
Confidence 344443321 12233334689999999998 5443444455544 245555543
No 353
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.61 E-value=1.1 Score=40.85 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE--
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL-- 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf-- 117 (220)
.+.+|+-||-|.+|+.+.-+|..+ ++.|+-+|.| ..++......+. .+++.+..+...+-.. ....|+++
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl---gA~Vtild~n-~~rl~~ldd~f~---~rv~~~~st~~~iee~-v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL---GADVTILDLN-IDRLRQLDDLFG---GRVHTLYSTPSNIEEA-VKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc---CCeeEEEecC-HHHHhhhhHhhC---ceeEEEEcCHHHHHHH-hhhccEEEEE
Confidence 345677788778899988888765 7899999999 988877766664 4688888887775433 45678764
Q ss_pred --EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 118 --IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 118 --iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
|-+.+ ...=+.+...+. ++| |++||---+-..|
T Consensus 239 VLIpgak---aPkLvt~e~vk~--Mkp-GsVivDVAiDqGG 273 (371)
T COG0686 239 VLIPGAK---APKLVTREMVKQ--MKP-GSVIVDVAIDQGG 273 (371)
T ss_pred EEecCCC---CceehhHHHHHh--cCC-CcEEEEEEEcCCC
Confidence 55554 222345665565 554 8877643333333
No 354
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.54 E-value=1 Score=41.95 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=57.1
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhcCCCccEEEEc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGDYRGADFVLID 119 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~~~~~D~VfiD 119 (220)
++||-||+|.+|..+++...+- ..++|+..+.+ ++.++.+.....+ +++.++=|+.+. +..+...+|+|+.=
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs-~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRS-KEKCARIAELIGG---KVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC--CCceEEEEeCC-HHHHHHHHhhccc---cceeEEecccChHHHHHHHhcCCEEEEe
Confidence 5789999998998888765332 13899999999 8888777766432 566666665432 33344567888755
Q ss_pred CCCCCccHHHHHHHHHh
Q 042616 120 CNIDIDGHKNVFRAAKE 136 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~ 136 (220)
++. ......++.+.+
T Consensus 76 ~p~--~~~~~i~ka~i~ 90 (389)
T COG1748 76 APP--FVDLTILKACIK 90 (389)
T ss_pred CCc--hhhHHHHHHHHH
Confidence 554 333445555444
No 355
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.53 E-value=1.1 Score=35.25 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=48.2
Q ss_pred HHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC
Q 042616 32 ISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR 111 (220)
Q Consensus 32 L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~ 111 (220)
-..+++..+..+|+|+|-|..--.+..|.+. |-.|+++|.+ +. .|+ ..+.++.-|..+--..+..
T Consensus 5 a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~----G~dV~~tDi~-~~---~a~-------~g~~~v~DDif~P~l~iY~ 69 (127)
T PF03686_consen 5 AEYIARLNNYGKIVEVGIGFNPEVAKKLKER----GFDVIATDIN-PR---KAP-------EGVNFVVDDIFNPNLEIYE 69 (127)
T ss_dssp HHHHHHHS-SSEEEEET-TT--HHHHHHHHH----S-EEEEE-SS--S--------------STTEE---SSS--HHHHT
T ss_pred HHHHHHhCCCCcEEEECcCCCHHHHHHHHHc----CCcEEEEECc-cc---ccc-------cCcceeeecccCCCHHHhc
Confidence 3344556677899999987544455555553 6789999999 65 111 2355666665542123357
Q ss_pred CccEEE-EcCCCCCccHHHHHHHHHhh
Q 042616 112 GADFVL-IDCNIDIDGHKNVFRAAKES 137 (220)
Q Consensus 112 ~~D~Vf-iD~~k~~~~y~~~l~~l~~~ 137 (220)
..|+|+ +-++. +.....++.+.+.
T Consensus 70 ~a~lIYSiRPP~--El~~~il~lA~~v 94 (127)
T PF03686_consen 70 GADLIYSIRPPP--ELQPPILELAKKV 94 (127)
T ss_dssp TEEEEEEES--T--TSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCh--HHhHHHHHHHHHh
Confidence 889998 55665 6667777777765
No 356
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=92.46 E-value=2.6 Score=38.99 Aligned_cols=128 Identities=14% Similarity=0.093 Sum_probs=72.4
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~- 99 (220)
.+.-.|...+|-..||+..++..++-.. |++....+.+...+.+ +.+|++.++.=...............-.+.++.
T Consensus 48 ~R~~npt~~~Le~~lA~leg~e~ivvt~-gg~~Ai~~~l~all~~-Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 48 TRSGNPNRGLLEQTLSELESGKGAVVTN-CGTSALNLWVSALLGP-DDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCC-CCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 4567788999999999999999888654 3355554444433444 778887665512123333333321111233332
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.|..++...+.+..++||+..+... -+..++.+.+. ..|.++|+||++..+
T Consensus 126 ~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~------~~gi~vIvDea~~~~ 180 (388)
T PRK08861 126 SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAK------AVGALVAVDNTFLTP 180 (388)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHH------HcCCEEEEECCcccc
Confidence 2344433333356799999765411 12233333333 248999999998643
No 357
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=92.45 E-value=3.9 Score=37.57 Aligned_cols=131 Identities=13% Similarity=0.008 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|=..||+..+++.++-..+| +....+.+..-+.+ +.+|++.++.=+.....+...++...-+++++.-+
T Consensus 46 r~gnPt~~~lE~~lA~l~g~~~~~~~~sG-~~Ai~~al~all~~-GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 46 RRGTLTHFALQDAMCELEGGAGCYLYPSG-LAAVTNSILAFVKA-GDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEECcH-HHHHHHHHHHhcCC-CCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 45568777777788887787777755432 33333333323444 78888776651222333333333221134443221
Q ss_pred hhhhhhh-cCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 102 AQKLLMG-DYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 102 a~~~L~~-~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
..+.+.. +.+...+|++..+....-....++.+.+. .+..|..+|+||+...|
T Consensus 124 ~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~l--a~~~g~~livD~t~a~g 177 (377)
T TIGR01324 124 IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKA--ARNPGIVIMIDNTWAAG 177 (377)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCCccc
Confidence 1122322 23567899988765222223334444443 33358999999998644
No 358
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=92.41 E-value=1.5 Score=40.21 Aligned_cols=58 Identities=16% Similarity=0.004 Sum_probs=37.1
Q ss_pred CCCChhHHHHHHHHHhhC--------------CCCEEEEEcC--CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 22 RGKEPDVGEFISALAAGN--------------NAQLIVMACS--SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~--------------~a~~ILEIGt--g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
+.-..+....|..+.... ++.+|+-+.. ||+|-+|+. ||.++...|-+|..||.| ++.
T Consensus 70 r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D-pQ~ 145 (387)
T TIGR03453 70 RSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD-PQA 145 (387)
T ss_pred eeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC-CCC
Confidence 455566666666555431 1224555533 568888764 776676657799999999 865
No 359
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.27 E-value=0.71 Score=40.26 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=65.9
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCC-CccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYR-GADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~-~~D~VfiD~~ 121 (220)
+++|+-|| +|-.++.|-.|. --.+.++|.| +.+.+.-+.|+. ....+|..++-+.... .+|+++-..+
T Consensus 2 ~~~dlFsG-~Gg~~~g~~~ag---~~~~~a~e~~-~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSG-IGGFSLGLEQAG---FEVVWAVEID-PDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-T-TTHHHHHHHHTT---EEEEEEEESS-HHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred cEEEEccC-ccHHHHHHHhcC---cEEEEEeecC-HHHHHhhhhccc------ccccccccccccccccccceEEEeccC
Confidence 58999986 898999888762 1367999999 888888888873 7888888775433223 5999875433
Q ss_pred C---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 122 I---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 122 k---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
= +...+.++++.+... +| -+++..||-
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~---~P--k~~~~ENV~ 112 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL---KP--KYFLLENVP 112 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH---S---SEEEEEEEG
T ss_pred CceEeccccccccccccchhhHHHHHHHhhc---cc--eEEEecccc
Confidence 1 124578888888876 45 578889995
No 360
>PRK09028 cystathionine beta-lyase; Provisional
Probab=92.26 E-value=3.9 Score=37.97 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=77.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|=..+|...++..++-..+| +......+..-+++ |.+|++.++.=+.....+...+....-.+.++..+
T Consensus 57 r~~npt~~~Le~~iA~le~~~~~~~~~sG-~~Ai~~~l~all~~-GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 57 RRGTPTHFAFQAAIVELEGGAGTALYPSG-AAAISNALLSFLKA-GDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence 44456556666677776666666644432 33332222223444 88999888762233444444443221234444332
Q ss_pred hhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCccceEEEeeecCCcEEEEEEe
Q 042616 102 AQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKGSWRGYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 102 a~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~~~~~s~~lPig~Gl~v~~~~ 178 (220)
..+.+... .+...+|++..+....-....++.+.+. .+..|.++++||++..+ ...-|+.-|..+..-.
T Consensus 135 ~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~l--a~~~g~~lvvD~t~a~p------~~~~Pl~~GaDivv~S 204 (394)
T PRK09028 135 IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRI--AHEHDIVVMLDNTWASP------INSRPFEMGVDISIQA 204 (394)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCcccc------ccCCccccCceEEEEe
Confidence 22333332 3557899998876221113334555444 33458999999998532 2234555565555544
No 361
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=92.15 E-value=1.7 Score=39.37 Aligned_cols=100 Identities=17% Similarity=0.075 Sum_probs=59.1
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc--CC
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD--YR 111 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~--~~ 111 (220)
..+.++||-.|+|++|..++.+|++. +. +|++++.+ +++.+.+++. |....+..... +..+.+..+ ..
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~---G~~~vi~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAA---GASKVIAFEIS-EERRNLAKEM--GADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCC-HHHHHHHHHc--CCCEEEcccccccccHHHHHHHhcCCC
Confidence 34567888789888999998898875 45 79999998 7777776663 22111111111 222222222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.+|+|+ |+.- .....++.+.+. |++ +|.++.-
T Consensus 275 gvDvvl-d~~g---~~~~~~~~~~~~--l~~-~G~~v~~ 306 (384)
T cd08265 275 GADIQV-EAAG---APPATIPQMEKS--IAI-NGKIVYI 306 (384)
T ss_pred CCCEEE-ECCC---CcHHHHHHHHHH--HHc-CCEEEEE
Confidence 699665 7743 223445666666 654 6666543
No 362
>PRK05968 hypothetical protein; Provisional
Probab=92.07 E-value=4.4 Score=37.18 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|.+.+|=..+++..+.+..+-+++| +....+.+...+.+ |.+|++.+..=..........+....-.+.++..+
T Consensus 59 r~~~p~~~~le~~lA~l~g~~~av~~~sG-~~Ai~~al~al~~~-Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (389)
T PRK05968 59 RGDNPTVRAFEEMLAKLEGAEDARGFASG-MAAISSTVLSFVEP-GDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR 136 (389)
T ss_pred CCCChhHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC
Confidence 45678888888889988887776666543 33333233223344 78888877641222222333333111235555443
Q ss_pred -hhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 -AQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 -a~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..++. ....+.++|++..+....-....++.+.+. .+..|..+++||+...
T Consensus 137 d~~~l~-~~i~~tklV~ie~pt~~~~~~~dl~~i~~l--a~~~gi~vivD~a~a~ 188 (389)
T PRK05968 137 DEEAVA-KALPGAKLLYLESPTSWVFELQDVAALAAL--AKRHGVVTMIDNSWAS 188 (389)
T ss_pred CHHHHH-HhcccCCEEEEECCCCCCCcHHHHHHHHHH--HHHcCCEEEEECCCcc
Confidence 33333 323457899998665111112334444443 2334889999998743
No 363
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.06 E-value=3.1 Score=39.12 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=71.2
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~- 99 (220)
.+...|...+|=..+++..+++..+-.++| ++..++.+...+.+ +.+|++....=..........+....-.+.++.
T Consensus 64 sr~~~p~~~~Le~~lA~l~g~~~av~~sSG-~aAi~~al~all~~-Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd 141 (436)
T PRK07812 64 TRIMNPTQDVVEQRIAALEGGVAALLLASG-QAAETFAILNLAGA-GDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVED 141 (436)
T ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEEccH-HHHHHHHHHHHhCC-CCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECC
Confidence 355678888999999998888877767654 55444445444454 788877654301222222333332212344442
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.|.+++...+.....+|++...... .+..++.+.+.+ .|.++|+||+..
T Consensus 142 ~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~------~gi~liVD~t~a 195 (436)
T PRK07812 142 PDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHE------AGVPLIVDNTIA 195 (436)
T ss_pred CCCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHH------cCCEEEEECCCc
Confidence 2344444333345678988766411 233444444443 488999999864
No 364
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.06 E-value=0.92 Score=37.60 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=55.6
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----cc---------CCcEEEEEcchhhhhhh
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RY---------ANCIEFVKGDAQKLLMG 108 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~---------~~~Ve~v~gda~~~L~~ 108 (220)
+|--||.|.+|..+. .++.+.|=+|+++|.| ++.++...+-.- ++ ..+..+ .-|..+.+
T Consensus 2 ~I~ViGlGyvGl~~A---~~lA~~G~~V~g~D~~-~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai-- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLA---AALAEKGHQVIGVDID-EEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI-- 74 (185)
T ss_dssp EEEEE--STTHHHHH---HHHHHTTSEEEEE-S--HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH--
T ss_pred EEEEECCCcchHHHH---HHHHhCCCEEEEEeCC-hHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh--
Confidence 566778766664433 3333336799999999 888876554221 11 122222 23444433
Q ss_pred cCCCccEEEEcCCCCC--------ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 109 DYRGADFVLIDCNIDI--------DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~--------~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|++||--+.+. .......+.+.+. +++ |.+||......+|
T Consensus 75 --~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~--l~~-~~lvV~~STvppG 125 (185)
T PF03721_consen 75 --KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPV--LRP-GDLVVIESTVPPG 125 (185)
T ss_dssp --HH-SEEEE----EBETTTSBETHHHHHHHHHHHHH--HCS-CEEEEESSSSSTT
T ss_pred --hccceEEEecCCCccccCCccHHHHHHHHHHHHHH--Hhh-cceEEEccEEEEe
Confidence 24788887655411 1135667788887 764 9999999999888
No 365
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=92.05 E-value=3 Score=38.52 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEE-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~- 99 (220)
+.-.|...+|=..+++..+++..+-.++| ....++.+...+.+ +.+|++.++. -.. ....+..+....-++.++.
T Consensus 60 r~~~p~~~~le~~lA~l~g~~~~i~~ssG-~~Ai~~~l~all~~-GD~Vi~~~~~-y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEGAEAATAFSTG-MAAISNTLYTFLKP-GDRVVSIKDT-YGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred CCCChHHHHHHHHHHHHhCCCeEEEeCCh-HHHHHHHHHHhcCC-CCEEEEcCCc-hHHHHHHHHHHHhhCCeEEEEcCC
Confidence 56778888998999998888887766643 33333333223444 7788887766 322 2223333331111233332
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.|..++...+....++|++..+... .+...+.+.+. ..|.+||+||+..
T Consensus 137 ~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~------~~gi~livD~t~a 189 (398)
T PRK08249 137 GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAK------KVGALVVVDNTFA 189 (398)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHH------HcCCEEEEECCcC
Confidence 2344433233345789998765411 22233333333 3489999999975
No 366
>PRK08114 cystathionine beta-lyase; Provisional
Probab=91.99 E-value=7.6 Score=36.10 Aligned_cols=131 Identities=14% Similarity=0.037 Sum_probs=78.3
Q ss_pred CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 20 GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 20 ~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
..+.-.|....|=..||...++...+-..+| ++..+..+..-+.+ |.+|++.+..=.......++.++...-++.++.
T Consensus 56 YsR~~nPt~~~le~~la~LEg~~~a~~~~SG-maAi~~~~~~ll~~-GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd 133 (395)
T PRK08114 56 YGRRGTLTHFSLQEAMCELEGGAGCALYPCG-AAAVANAILAFVEQ-GDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFD 133 (395)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCeEEEEhHH-HHHHHHHHHHHcCC-CCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEEC
Confidence 3466788888888889998898888877643 33333333323444 888887654313344555555542222455554
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.|..++-..+.+...+|++...... .+...+-+.+.+.+ +|.++++||++.-+
T Consensus 134 ~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g----~g~~lvVDnT~a~p 191 (395)
T PRK08114 134 PLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVN----PDAVIMIDNTWAAG 191 (395)
T ss_pred CCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhC----CCCEEEEECCCccc
Confidence 3444433333345789999987622 23445555555541 27899999998643
No 367
>PRK13699 putative methylase; Provisional
Probab=91.81 E-value=0.42 Score=40.96 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=37.6
Q ss_pred EEEEEcchhhhhhhc-CCCccEEEEcCCCC------------CccH----HHHHHHHHhhcCCCCCCEEEEE
Q 042616 95 IEFVKGDAQKLLMGD-YRGADFVLIDCNID------------IDGH----KNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 95 Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~------------~~~y----~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+++++||+.+.|+.+ .+++|+||-|++-. ...| ..+++.+.+. |+| ||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RV--LKp-gg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRV--LKK-DALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHH--cCC-CCEEEE
Confidence 478999999999877 47899999997541 0112 3566777888 887 777654
No 368
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=91.80 E-value=0.55 Score=41.25 Aligned_cols=104 Identities=8% Similarity=0.005 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhh--hcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLM--GDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~--~~~~~~D~V 116 (220)
.+..+||=+|++ .|++--....-..+ .|-|++||.+ +..=...-.+.+. ..||--+..||..--+ -+..-+|+|
T Consensus 155 kpGsKVLYLGAa-sGttVSHvSDiVGp-eG~VYAVEfs-~rsGRdL~nmAkk-RtNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 155 KPGSKVLYLGAA-SGTTVSHVSDIVGP-EGCVYAVEFS-HRSGRDLINMAKK-RTNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred cCCceEEEeecc-CCceeehhhcccCC-CceEEEEEec-ccchHHHHHHhhc-cCCceeeeccCCCchheeeeeeeEEEE
Confidence 566889999985 89888888888777 8999999999 5433222222222 2567778888865221 113679999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|-|-+. .+-.+++.+=... .|++.|.+++.
T Consensus 231 FaDvaq--pdq~RivaLNA~~-FLk~gGhfvis 260 (317)
T KOG1596|consen 231 FADVAQ--PDQARIVALNAQY-FLKNGGHFVIS 260 (317)
T ss_pred eccCCC--chhhhhhhhhhhh-hhccCCeEEEE
Confidence 999988 6666665544443 26665555554
No 369
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.76 E-value=0.74 Score=40.15 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=52.0
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.++||-.| + +|+.+..|+..+...+-+|+++..+ +........... +..++++++.+|..+. +......+|.|
T Consensus 4 ~~~ilVtG-a-tGfIG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 4 GKVVCVTG-A-SGYIASWLVKLLLQRGYTVKATVRD-PNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCEEEEEC-C-hHHHHHHHHHHHHHCCCEEEEEEcC-CCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 47899888 3 7999999888887767789888887 554332222221 2235789999987642 22334568999
Q ss_pred EEcCC
Q 042616 117 LIDCN 121 (220)
Q Consensus 117 fiD~~ 121 (220)
|.-+.
T Consensus 81 ih~A~ 85 (322)
T PLN02662 81 FHTAS 85 (322)
T ss_pred EEeCC
Confidence 87664
No 370
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=91.74 E-value=4.6 Score=36.84 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=69.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-cc-CCcEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RY-ANCIEFV 98 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~-~~~Ve~v 98 (220)
.+.-.|...+|-.++++..+++.++-.. |+....++.+ .++++ |.+|++.... - ......+. -. ...+++.
T Consensus 49 ~R~~~p~~~~le~~lA~leg~~~~v~~~-sG~aAi~~~l-~~l~~-GD~VI~~~~~-y---g~~~~~~~~~~~~~~~~~~ 121 (364)
T PRK07269 49 TRTKNPTRAKLEETLAAIESADYALATS-SGMSAIVLAF-SVFPV-GSKVVAVRDL-Y---GGSFRWFNQQEKEGRFHFT 121 (364)
T ss_pred eCCCCccHHHHHHHHHHHhCCCeEEEeC-CHHHHHHHHH-HHhCC-CCEEEEecCC-c---CchHHHHHHHHhcCcEEEE
Confidence 3567888999999999999999888654 3244444444 24444 7888876443 1 11112121 10 0123332
Q ss_pred -EcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 99 -KGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 99 -~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.-|..++...+.+.-++||+..+....-....++.+.+. .+..|..+|+||++..
T Consensus 122 ~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~l--a~~~gi~vvvD~t~~~ 177 (364)
T PRK07269 122 YANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKL--AHAKGAKVIVDNTFYS 177 (364)
T ss_pred ecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHH--HHHcCCEEEEECCCcc
Confidence 235555433333567899988776211111123333332 2234899999999753
No 371
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.71 E-value=2.9 Score=38.13 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEE-cchhhhhhhcCCCccEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVK-GDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~~~~~D~Vf 117 (220)
+.+.||-.|+|++|..++.+|++. +.+|+.++.+ ++. .+.+++. |. +. ++. .+...+. .....+|++|
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~---Ga~Vi~~~~~-~~~~~~~a~~l--Ga-~~--~i~~~~~~~v~-~~~~~~D~vi 247 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAF---GLRVTVISRS-SEKEREAIDRL--GA-DS--FLVTTDSQKMK-EAVGTMDFII 247 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHc---CCeEEEEeCC-hHHhHHHHHhC--CC-cE--EEcCcCHHHHH-HhhCCCcEEE
Confidence 568888889988999999999875 5689999887 443 5555432 32 11 111 1212222 2224689776
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-- . ...++.+.+. +++ ||.++.-..
T Consensus 248 -d~~G--~--~~~~~~~~~~--l~~-~G~iv~vG~ 274 (375)
T PLN02178 248 -DTVS--A--EHALLPLFSL--LKV-SGKLVALGL 274 (375)
T ss_pred -ECCC--c--HHHHHHHHHh--hcC-CCEEEEEcc
Confidence 5533 1 2345666666 655 666665433
No 372
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.65 E-value=1.9 Score=34.44 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=57.8
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--------ccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--------RYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--------g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
+|.-||+|. .-+++ |..+...+-+|+-..++ ++.++..++.-. .+..++.+ ..|..+.+ ...|
T Consensus 1 KI~ViGaG~-~G~Al--A~~la~~g~~V~l~~~~-~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----~~ad 71 (157)
T PF01210_consen 1 KIAVIGAGN-WGTAL--AALLADNGHEVTLWGRD-EEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----EDAD 71 (157)
T ss_dssp EEEEESSSH-HHHHH--HHHHHHCTEEEEEETSC-HHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----TT-S
T ss_pred CEEEECcCH-HHHHH--HHHHHHcCCEEEEEecc-HHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----Cccc
Confidence 467788763 33333 33333335578888888 777666555332 12234543 56777766 3579
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++--+. ....++++.+.++ ++ ++..||.
T Consensus 72 ~IiiavPs--~~~~~~~~~l~~~--l~-~~~~ii~ 101 (157)
T PF01210_consen 72 IIIIAVPS--QAHREVLEQLAPY--LK-KGQIIIS 101 (157)
T ss_dssp EEEE-S-G--GGHHHHHHHHTTT--SH-TT-EEEE
T ss_pred EEEecccH--HHHHHHHHHHhhc--cC-CCCEEEE
Confidence 99999988 7889999999998 75 4666664
No 373
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=91.63 E-value=3.7 Score=37.79 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=71.4
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
.+.-.|...+|-..||+..++..++-.. |++....+.+...+++ +.+|+..++. -. .............-.+.++.
T Consensus 47 ~R~~~pt~~~L~~~lA~l~g~~~~i~~~-sg~~Ai~~~l~~l~~~-GD~Vl~~~~~-y~~~~~~~~~~~~~~gi~v~~vd 123 (386)
T PRK08045 47 SRRGNPTRDVVQRALAELEGGAGAVLTN-TGMSAIHLVTTVFLKP-GDLLVAPHDC-YGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_pred eCCCCccHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCC-CCEEEEcCCC-cHHHHHHHHHHHhhCCeEEEEeC
Confidence 3566788889999999988877666444 3344444444433444 7888888776 33 34444443331111344432
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.|..++...+.+..++||+..+... . +..++.+.+. ..|.+||+||++..
T Consensus 124 ~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~------~~g~~vivDeay~~ 178 (386)
T PRK08045 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAR------EAGAVSVVDNTFLS 178 (386)
T ss_pred CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHH------HcCCEEEEECCCCc
Confidence 2344433333356799999866511 1 2233333332 24899999999754
No 374
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=91.62 E-value=1.1 Score=38.33 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=40.6
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHH--HHHHHhc-c-cCCcEEEEEcch----hhhhhhc-CCCccEEEE
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDID--ASKKSLG-R-YANCIEFVKGDA----QKLLMGD-YRGADFVLI 118 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~--~Ar~~l~-g-~~~~Ve~v~gda----~~~L~~~-~~~~D~Vfi 118 (220)
||+|-+|+. ||.++...|.+|..||.| |+..- ...+... . ............ .+.+... .+.||+|||
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~VlliD~D-pQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~yD~iiI 89 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALFEAD-ENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALA 89 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEeCC-CCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 568988875 667776656799999999 87642 2221111 1 111111221111 2222222 257999999
Q ss_pred cCCC
Q 042616 119 DCNI 122 (220)
Q Consensus 119 D~~k 122 (220)
|++.
T Consensus 90 D~pp 93 (231)
T PRK13849 90 DTHG 93 (231)
T ss_pred eCCC
Confidence 9988
No 375
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=91.54 E-value=3.3 Score=37.99 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|-..+++..+.+..+-+.+| +....+.+...+.+ +.+|++.++. -. ........+... .+++...
T Consensus 57 r~~~p~~~~Le~~lA~~~g~~~~i~~~sG-~~Ai~~~l~all~~-Gd~Vl~~~~~-y~~t~~~~~~~~~~~--gi~~~~~ 131 (388)
T PRK07811 57 RTGNPTRTALEEQLAALEGGAYGRAFSSG-MAATDCLLRAVLRP-GDHIVIPNDA-YGGTFRLIDKVFTRW--GVEYTPV 131 (388)
T ss_pred CCCCccHHHHHHHHHHHhCCCceEEeCCH-HHHHHHHHHHHhCC-CCEEEEcCCC-chHHHHHHHHhCcCC--CeEEEEe
Confidence 34557788888889988877766666643 44333333333444 7888887665 22 233333333221 2333332
Q ss_pred ---chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 ---DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 ---da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+....++||+..+... .+..++.+.+.+ .|.+||+||+...
T Consensus 132 d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~------~gi~lIvD~a~a~ 187 (388)
T PRK07811 132 DLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHD------AGAKVVVDNTFAS 187 (388)
T ss_pred CCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHH------cCCEEEEECCCCc
Confidence 444444333456789998765511 233333333333 4899999998753
No 376
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.51 E-value=0.095 Score=49.68 Aligned_cols=111 Identities=11% Similarity=0.060 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhhhhhc------CC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKLLMGD------YR 111 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~L~~~------~~ 111 (220)
.....|+++|. |.....|-..++ ..++++||.| |++++.|++++. --+++..++..|+.+++.+. ..
T Consensus 296 ~~~~lvvg~gg---G~l~sfl~~~~p--~~~i~~ve~d-P~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 296 GGKQLVVGLGG---GGLPSFLHMSLP--KFQITAVEID-PEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred cCcEEEEecCC---CccccceeeecC--ccceeEEEEC-hhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhcccccc
Confidence 33445555553 556666666655 4899999999 999999999997 22346777888888877544 24
Q ss_pred CccEEEEcCCCCC--------ccH--HHHHHHHHhhcCCCCCCEEEEEecCCCCCCc
Q 042616 112 GADFVLIDCNIDI--------DGH--KNVFRAAKESVMHGSGAGVIVGYNALPKGSW 158 (220)
Q Consensus 112 ~~D~VfiD~~k~~--------~~y--~~~l~~l~~~~~L~~~Ggviv~dNv~~~g~~ 158 (220)
.||++++|-+-.. ..+ ...+...+.. | |+-|+++.+-+....++
T Consensus 370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~--l-~p~g~f~inlv~r~~~~ 423 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMI--L-PPRGMFIINLVTRNSSF 423 (482)
T ss_pred CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhc--c-CccceEEEEEecCCcch
Confidence 6999999976510 122 3344555555 5 45777776555544433
No 377
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.51 E-value=4.1 Score=34.85 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=58.8
Q ss_pred hCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 38 GNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 38 ~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
..+.+.||-.|+ |.+|..++.+|++. +.+|+++..+ ++..+.+++ + |. +.+-....+..+.+..+..++|++
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~-~-g~-~~~~~~~~~~~~~i~~~~~~~d~v 212 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKAL---GATVTATTRS-PERAALLKE-L-GA-DEVVIDDGAIAEQLRAAPGGFDKV 212 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHh-c-CC-cEEEecCccHHHHHHHhCCCceEE
Confidence 456788988885 67888888888875 6789999999 777776644 2 33 222111223333232334579988
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+ |+-. . ..++.+.+. |.+ +|.++.
T Consensus 213 l-~~~~--~---~~~~~~~~~--l~~-~g~~v~ 236 (320)
T cd08243 213 L-ELVG--T---ATLKDSLRH--LRP-GGIVCM 236 (320)
T ss_pred E-ECCC--h---HHHHHHHHH--hcc-CCEEEE
Confidence 7 6654 2 345566666 655 555543
No 378
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=91.50 E-value=2.7 Score=37.99 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=59.8
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc--hhhhhhhc-CC
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGD--AQKLLMGD-YR 111 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd--a~~~L~~~-~~ 111 (220)
+...+.+.||-+|+|++|..++.+|.+. +. +|+.++.+ ++..+.++. + |....+.....+ ..+.+..+ .+
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~~~-~~~~~~a~~-l-Ga~~~i~~~~~~~~~~~~v~~~~~~ 259 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKAA---GASRIIAVDIN-KDKFAKAKE-L-GATECINPQDYKKPIQEVLTEMTDG 259 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHH-c-CCceEecccccchhHHHHHHHHhCC
Confidence 3345568888889888888888888875 55 89999999 888888755 3 331122222211 22222221 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+|++ +|+-- . ...+...... +++.||.++.-...
T Consensus 260 ~~d~v-ld~~g--~--~~~~~~~~~~--~~~~~G~~v~~g~~ 294 (373)
T cd08299 260 GVDFS-FEVIG--R--LDTMKAALAS--CHEGYGVSVIVGVP 294 (373)
T ss_pred CCeEE-EECCC--C--cHHHHHHHHh--hccCCCEEEEEccC
Confidence 68855 56644 2 2333443332 22346666655443
No 379
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=91.44 E-value=3.6 Score=37.76 Aligned_cols=130 Identities=16% Similarity=0.033 Sum_probs=70.5
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..+++..++..++ +++|++....+.+..-+.+ +.+|++.++.=...............-.+.++..
T Consensus 46 ~R~~~p~~~~le~~lA~l~g~~~v~-~~~gg~~Ai~~~l~all~~-GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~ 123 (382)
T TIGR02080 46 SRSGNPTRDLLQQALAELEGGAGAV-VTNTGMSAIHLVTTALLGP-DDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ 123 (382)
T ss_pred cCCCCchHHHHHHHHHHHhCCCcEE-EEcCHHHHHHHHHHHHcCC-CCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC
Confidence 4556788888888899888888777 4434344444444333444 7788877776122344444433311123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+....++||+..+... ....+ ++.+.+. .+..|.+||+||+...
T Consensus 124 ~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d-l~~I~~l--a~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 124 GDEQALRAALAQKPKLVLIETPSNPLLRVVD-IAKICHL--AKAVGAVVVVDNTFLS 177 (382)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCEecC-HHHHHHH--HHHcCCEEEEECCCcc
Confidence 334433333345799998765511 11111 2333332 2234899999999754
No 380
>PRK06234 methionine gamma-lyase; Provisional
Probab=91.39 E-value=8.3 Score=35.52 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+.-.|...+|-..+++..+.+.++-.++| ++...+.+...+++ +.+|++.++.=+.........++...-++.++..
T Consensus 60 r~~~p~~~~Le~~iA~~~g~~~~l~~~sG-~~Ai~~al~~ll~~-Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~ 137 (400)
T PRK06234 60 RLGNPTSTEVENKLALLEGGEAAVVAASG-MGAISSSLWSALKA-GDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS 137 (400)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEEcCH-HHHHHHHHHHHhCC-CCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC
Confidence 34568888999999998887777766643 44333334333444 7788877654111222222222211123333332
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+....++||+..+... .+..++.+.+.++ ++|.++|+||++..
T Consensus 138 d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~----~~~i~livDea~~~ 192 (400)
T PRK06234 138 NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHEN----NKECLVFVDNTFCT 192 (400)
T ss_pred CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhc----CCCCEEEEECCCCc
Confidence 444544333345789998765411 2334444444443 23889999999754
No 381
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=91.37 E-value=3.9 Score=37.04 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|...+|-..++...+.+..+-..+| +....+.+...+.+ +.+|++....=.......+..+....-++.++..+
T Consensus 36 r~~~p~~~~le~~la~l~g~~~a~~~~sG-~~Ai~~~l~~l~~~-gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 113 (369)
T cd00614 36 RIGNPTVDALEKKLAALEGGEAALAFSSG-MAAISTVLLALLKA-GDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD 113 (369)
T ss_pred CCCChhHHHHHHHHHHHHCCCCEEEEcCH-HHHHHHHHHHHcCC-CCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC
Confidence 44678888888888888777777666543 33333333333344 77777766541222333333332111234444433
Q ss_pred -hhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 -AQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 -a~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
..++...+.....+|++...... ....+ ++.+.+. .+..|.++++||++..
T Consensus 114 d~~~l~~~i~~~~~~v~~e~~~np~g~~~d-l~~i~~l--a~~~g~~livD~t~~~ 166 (369)
T cd00614 114 DPEALEAAIKPETKLVYVESPTNPTLKVVD-IEAIAEL--AHEHGALLVVDNTFAT 166 (369)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCeecC-HHHHHHH--HHHcCCEEEEECCCcc
Confidence 33333222346789998866411 11111 2333332 2234899999999743
No 382
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.35 E-value=6.4 Score=35.34 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~V 116 (220)
.+.+|.-||+|.+|++...+.. .......++-+|.+ ++.+ ..+..... .+..++.+..++..+ + ...|+|
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~-~~~~~~el~L~D~~-~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~----~~adiv 77 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALV-NQGIADELVIIDIN-KEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-C----KDADLV 77 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCC-CchhHHHHHHHHhhccccCCeEEEeCCHHH-h----CCCCEE
Confidence 4678999999988987666544 33335689999999 5544 44444433 222456666665444 3 467999
Q ss_pred EEcCCCCCc--------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDID--------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~~--------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++-+..... -+.++.+.+.+. .|++-+|++-|-
T Consensus 78 Iitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~---~~~~~vivvsNP 124 (315)
T PRK00066 78 VITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS---GFDGIFLVASNP 124 (315)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccCc
Confidence 997765111 134556666665 265555666553
No 383
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.29 E-value=2.3 Score=38.67 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch---------------------hHHHHHHHHhcccC--CcEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI---------------------GDIDASKKSLGRYA--NCIE 96 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~---------------------~~~~~Ar~~l~g~~--~~Ve 96 (220)
+..+|+-+|+|+.|...+....++. -|+++-||.| . .+++.|++.++.+. -+|+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG--vg~i~lvD~D-~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG--VGKVTIVDRD-YVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC-ccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 4466999999988887665333332 4899999998 3 34556666665322 2356
Q ss_pred EEEcchhh-hhhhcCCCccEEEEcCCC
Q 042616 97 FVKGDAQK-LLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 97 ~v~gda~~-~L~~~~~~~D~VfiD~~k 122 (220)
.+..+..+ -+..+...+|+|+.-.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~Dn 126 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDATDN 126 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcCCC
Confidence 66555422 222334679976644343
No 384
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=91.27 E-value=9.5 Score=34.89 Aligned_cols=136 Identities=18% Similarity=0.122 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhCC---CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH
Q 042616 11 KAYLQALKMGKRGKEPDVGEFISALAAGNN---AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS 87 (220)
Q Consensus 11 ~aY~~~l~~~~~~~~p~~~~~L~~La~~~~---a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~ 87 (220)
.+.-..+....+.-+|..-++..+++...+ +..|+ +|.|+.....+. ..+....+.+|+..++. =.+++.+-+.
T Consensus 42 ~~~~~~~~~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~-~gnGsde~i~~l-~~~~~~~gd~vl~~~Pt-f~~Y~~~a~~ 118 (356)
T COG0079 42 EAIRAALDKLNRYPDPDYRELRAALAEYYGVVDPENVL-VGNGSDELIELL-VRAFVEPGDTVLIPEPT-FSMYEIAAQL 118 (356)
T ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHhCCCCcceEE-EcCChHHHHHHH-HHHhhcCCCEEEEcCCC-hHHHHHHHHh
Confidence 333333444455556666788888877666 24444 677655555444 44444436688888888 5555554444
Q ss_pred hcccCCcEEEEE----cchhhhhhhcCCCccEEEEcCCC-CCccH--HHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 88 LGRYANCIEFVK----GDAQKLLMGDYRGADFVLIDCNI-DIDGH--KNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 88 l~g~~~~Ve~v~----gda~~~L~~~~~~~D~VfiD~~k-~~~~y--~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
.. . ..+++-. -|...++....+..|+||+..+. ..+.+ .+.++.+... + +.+++||.|.++.
T Consensus 119 ~g-~-~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~--~-~~~~~vVvDEAY~ 187 (356)
T COG0079 119 AG-A-EVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEA--L-PEGGLVVIDEAYI 187 (356)
T ss_pred cC-C-eEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--C-CCCcEEEEeCchh
Confidence 32 1 1122222 34344444334568999998554 22333 4455555555 4 4489999999983
No 385
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=91.25 E-value=3.4 Score=38.72 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|...+|-..++...+++..+-.++| +....+.+...+.+ +.+|++.+..=+......+..++...-++.++..
T Consensus 59 ~r~~~p~~~~Le~~lA~leg~~~al~~~sG-~~Ai~~al~~ll~~-GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 59 TRIMNPTTDVFEKRIAALEGGIGALAVSSG-QAAITYSILNIASA-GDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred ECCCCchHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 356788889999999998888877766654 44444444333454 7888877654112233333333322123444433
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.++.++|++...... .+..++.+.+.+ .|.++|+||++.
T Consensus 137 ~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~------~gi~vIvD~t~a 189 (431)
T PRK08248 137 SDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHE------HGIPLIVDNTFA 189 (431)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHH------cCCEEEEeCCCC
Confidence 334433222356789999754311 133333444433 488999999975
No 386
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=91.18 E-value=2.8 Score=37.97 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=71.8
Q ss_pred HHHhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CC
Q 042616 34 ALAAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YR 111 (220)
Q Consensus 34 ~La~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~ 111 (220)
...+....+.|+--++ |++|...-.||+. .+.||+.|--. +++.+..++.+. ...-|.....|..+.|++. .+
T Consensus 144 ~igqpk~GetvvVSaAaGaVGsvvgQiAKl---kG~rVVGiaGg-~eK~~~l~~~lG-fD~~idyk~~d~~~~L~~a~P~ 218 (340)
T COG2130 144 DIGQPKAGETVVVSAAAGAVGSVVGQIAKL---KGCRVVGIAGG-AEKCDFLTEELG-FDAGIDYKAEDFAQALKEACPK 218 (340)
T ss_pred HhcCCCCCCEEEEEecccccchHHHHHHHh---hCCeEEEecCC-HHHHHHHHHhcC-CceeeecCcccHHHHHHHHCCC
Confidence 3445555677776664 7789888889985 28899999999 999999888765 2234677777888888765 46
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
.+|+.|=.-.. ++++.+.++ |...+-+++|
T Consensus 219 GIDvyfeNVGg------~v~DAv~~~--ln~~aRi~~C 248 (340)
T COG2130 219 GIDVYFENVGG------EVLDAVLPL--LNLFARIPVC 248 (340)
T ss_pred CeEEEEEcCCc------hHHHHHHHh--hccccceeee
Confidence 79998855554 455666655 5543333443
No 387
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=91.18 E-value=4.5 Score=37.90 Aligned_cols=129 Identities=17% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGD 101 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gd 101 (220)
+.-.|..-.+=..+++..+++.++-..+| ...++..|..-++ .++++++.+.-=..-..+.++....+.-.+.++..+
T Consensus 73 r~~nPt~~~le~~iaal~ga~~~l~fsSG-maA~~~al~~L~~-~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 73 RSGNPTRDVLESGIAALEGAAHALLFSSG-MAAITVALLHLLP-AGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred cCCCCchHHHHHHHHHHhCCceEEEeccc-HHHHHHHHHHhcC-CCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh
Confidence 34466777777888899999988876654 5555555554444 489999986431333444444444222235666644
Q ss_pred hhhhhhhc-CCCccEEEEcCCCCCccH-HHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 102 AQKLLMGD-YRGADFVLIDCNIDIDGH-KNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 102 a~~~L~~~-~~~~D~VfiD~~k~~~~y-~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
-.+-+... .+..++||+-.+. ++.+ ...++.+.+. ....|.+||+||.+-.
T Consensus 151 ~~~~~~~~i~~~t~~V~~ESPs-NPll~v~DI~~l~~l--a~~~g~~vvVDnTf~~ 203 (409)
T KOG0053|consen 151 DLKKILKAIKENTKAVFLESPS-NPLLKVPDIEKLARL--AHKYGFLVVVDNTFGS 203 (409)
T ss_pred hHHHHHHhhccCceEEEEECCC-CCccccccHHHHHHH--HhhCCCEEEEeCCcCc
Confidence 43333333 3459999999887 2211 1223333333 2235999999999864
No 388
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=91.16 E-value=4.5 Score=37.23 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=70.0
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEE
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEF 97 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~ 97 (220)
.+.-.|...+|=..+|+..+.+..+-.++ |..++. +...+.+ +.+|++.++. .. .....+..+....-.+.+
T Consensus 54 ~r~~~p~~~~le~~lA~l~g~~~av~~~s---G~~Ai~~~l~al~~~-Gd~Vi~~~~~-y~~t~~~~~~~~~~~G~~~~~ 128 (391)
T TIGR01328 54 SRLGNPTVSNLEGRIAFLEGTEAAVATSS---GMGAIAATLLTILKA-GDHLISDECL-YGCTFALLEHALTKFGIQVDF 128 (391)
T ss_pred eCCCCchHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHHHHHhCC-CCEEEEecCc-chHHHHHHHHHHhcCCeEEEE
Confidence 35677888899999999888887776654 444443 3223344 7788886654 22 222333333222123444
Q ss_pred EEc-chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 98 VKG-DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 98 v~g-da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+.. |..++...+..+.++|++..+... .+..++.+.+. ..|..+++||+...
T Consensus 129 vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~------~~gi~livD~a~a~ 185 (391)
T TIGR01328 129 INMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAH------SQGVKVIVDNTFAT 185 (391)
T ss_pred ECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHH------HcCCEEEEECCCch
Confidence 433 344444333456789998766411 13333344333 34889999999753
No 389
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=91.08 E-value=4.1 Score=36.17 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=57.2
Q ss_pred EEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---ccCCcEEEEE-cchhhhhhhcCCCccEEEEcC
Q 042616 45 VMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---RYANCIEFVK-GDAQKLLMGDYRGADFVLIDC 120 (220)
Q Consensus 45 LEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---g~~~~Ve~v~-gda~~~L~~~~~~~D~VfiD~ 120 (220)
.-||+|.+|++..++... ......++.+|++ ++.++.-..-+. .....+.+.. +|. +-+ ...|+||+-+
T Consensus 2 ~iiGaG~VG~~~a~~l~~-~~~~~el~l~D~~-~~~~~g~~~DL~~~~~~~~~~~i~~~~~~-~~l----~~aDiVIita 74 (300)
T cd00300 2 TIIGAGNVGAAVAFALIA-KGLASELVLVDVN-EEKAKGDALDLSHASAFLATGTIVRGGDY-ADA----ADADIVVITA 74 (300)
T ss_pred EEECCCHHHHHHHHHHHh-cCCCCEEEEEeCC-ccHHHHHHHhHHHhccccCCCeEEECCCH-HHh----CCCCEEEEcC
Confidence 347888889877764443 2224789999999 665543333333 1112345543 443 323 4679999987
Q ss_pred CCCCc--------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 121 NIDID--------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 121 ~k~~~--------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
..... -+.++.+.+.+. .|++-+|++-|-
T Consensus 75 g~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~---~p~~~viv~sNP 117 (300)
T cd00300 75 GAPRKPGETRLDLINRNAPILRSVITNLKKY---GPDAIILVVSNP 117 (300)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccCh
Confidence 75211 145566677776 265666666653
No 390
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=91.07 E-value=3.4 Score=37.86 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=70.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|.+.+|=..+++..+++..+-+++| +....+.++ .+.+ +.+|++.++.=+.........+....-.+.++..
T Consensus 45 ~r~~~p~~~~Le~~la~l~g~~~al~~~SG-~~Al~~~l~-~l~p-Gd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 45 SRSGNPTRFALEELIADLEGGVKGFAFASG-LAGIHAVFS-LFQS-GDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred cCCCChhHHHHHHHHHHHhCCCCEEEECCH-HHHHHHHHH-HcCC-CCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 356778888888889888877777767654 443333333 3444 8899887654122333333333321112333322
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.....+||+..+... .+..++.+.+.+ .|.+||+||+...
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~------~gi~vivD~t~a~ 175 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKD------HGLLTIVDNTFAT 175 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHH------cCCEEEEECCccc
Confidence 333433222356789998655411 133334444333 4899999999753
No 391
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.96 E-value=1.3 Score=39.64 Aligned_cols=94 Identities=16% Similarity=0.056 Sum_probs=63.3
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 44 IVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 44 ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
|+|+-|| +|-.++.|-.| |-+ +.++|.| +...+.-+.|+.+ +++++|..++-+.....+|+++-..+=
T Consensus 1 vidLF~G-~GG~~~Gl~~a----G~~~~~a~e~~-~~a~~ty~~N~~~-----~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAG-IGGIRLGFEQA----GFKCVFASEID-KYAQKTYEANFGN-----KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecC-ccHHHHHHHHc----CCeEEEEEeCC-HHHHHHHHHhCCC-----CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 5788886 78888888765 444 5679999 8888888887642 445678777654323467888643221
Q ss_pred ---------------CCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 123 ---------------DIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 123 ---------------~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
++..+.++++.+... +| -++|..||-
T Consensus 70 q~fS~ag~~~~~~d~r~~L~~~~~r~i~~~---~P--~~~v~ENV~ 110 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTLFFEIVRILKEK---KP--KFFLLENVK 110 (315)
T ss_pred cccchhcccCCCCCchhhHHHHHHHHHhhc---CC--CEEEeeccH
Confidence 112456777777764 45 589999995
No 392
>PRK05939 hypothetical protein; Provisional
Probab=90.89 E-value=6.2 Score=36.47 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-c
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-G 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-g 100 (220)
+.-.|.+.+|=..++...+++..+-..+| .......|...+.+ |.+|++.+..-+....... .+....-.+.++. .
T Consensus 43 r~g~p~~~~lE~~la~leg~~~~v~~ssG-~~Ai~~~l~all~~-Gd~Vv~~~~~y~~t~~~~~-~l~~~G~~v~~v~~~ 119 (397)
T PRK05939 43 RQGTPTTAALEAKITKMEGGVGTVCFATG-MAAIAAVFLTLLRA-GDHLVSSQFLFGNTNSLFG-TLRGLGVEVTMVDAT 119 (397)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEeCCH-HHHHHHHHHHHcCC-CCEEEECCCccccHHHHHH-HHHhcCCEEEEECCC
Confidence 45668888888889998888877766643 33333333323444 7888887664112222221 2221112344443 2
Q ss_pred chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|.+++...+.+...+|++.......-....++.+.+. .+..|.++++||+..
T Consensus 120 d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~l--a~~~gi~livD~t~a 171 (397)
T PRK05939 120 DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGAL--CRERGLLYVVDNTMT 171 (397)
T ss_pred CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHH--HHHcCCEEEEECCcc
Confidence 4444433334567899998754111112233444443 233589999999874
No 393
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.82 E-value=2.7 Score=37.29 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc--ccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG--RYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~--g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..+|+-+|+|+.|.+-.+.. .+.+-.|+-+..+ +. +..+++ +. .......+..-.+.... ....++|+||
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L---~~~g~~V~~~~r~-~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAML---ARAGFDVHFLLRS-DY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHH---HHCCCeEEEEEeC-CH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEE
Confidence 35799999887765433322 2225678888887 52 222221 11 11111111100011111 1135799999
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+-... .+..+.++.+.+. +.+++-++..-|-+
T Consensus 78 lavK~--~~~~~~~~~l~~~--~~~~~~iv~lqNG~ 109 (313)
T PRK06249 78 VGLKT--TANALLAPLIPQV--AAPDAKVLLLQNGL 109 (313)
T ss_pred EEecC--CChHhHHHHHhhh--cCCCCEEEEecCCC
Confidence 98876 6667788888887 76644445555544
No 394
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.76 E-value=4.6 Score=35.65 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=36.4
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHH
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKK 86 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~ 86 (220)
+...+.++||-.|+|++|..++.+|++. +.+ |+.+..+ ++..+.+++
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~---G~~~v~~~~~~-~~~~~~~~~ 205 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAF---GATKVVVTDID-PSRLEFAKE 205 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCC-HHHHHHHHH
Confidence 3445678888788887899999999875 455 8999988 777777765
No 395
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.75 E-value=7.1 Score=34.79 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=57.8
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|.+|.+...++.. ......|+-+|.+ ++.++ .|..... .+.....+..+|..+ + ...|+||+-
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-~g~~~ev~l~D~~-~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l----~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-RGLASEIVLVDIN-KAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-C----KGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCCEEEEEECC-chhhhhHHHHHHccccccCCeEEeeCCHHH-h----CCCCEEEEc
Confidence 47789988777765554332 2113589999999 76654 3333332 222334555555433 2 467999998
Q ss_pred CCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 120 CNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 120 ~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
+.... ..+.++.+.+.+. .|+|-++++-|
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~---~~~giiiv~tN 117 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKY---APDAILLVVTN 117 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence 77521 1145666677776 36555666645
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.75 E-value=6.1 Score=33.22 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
..++||-+|.|.+|+.-+ ..+-+.+++|+-|+++ .. +..++..+ ..+|+++.++.... ....+|+||+-
T Consensus 8 ~gk~vlVvGgG~va~rk~---~~Ll~~ga~VtVvsp~-~~--~~l~~l~~--~~~i~~~~~~~~~~---dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKA---RLLLKAGAQLRVIAEE-LE--SELTLLAE--QGGITWLARCFDAD---ILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHH---HHHHHCCCEEEEEcCC-CC--HHHHHHHH--cCCEEEEeCCCCHH---HhCCcEEEEEC
Confidence 457899999654444433 3333447899988887 43 11122111 13789988886532 23579999987
Q ss_pred CCCCCc-cHHHHHHHHHh
Q 042616 120 CNIDID-GHKNVFRAAKE 136 (220)
Q Consensus 120 ~~k~~~-~y~~~l~~l~~ 136 (220)
.+- . .-..+...+..
T Consensus 77 t~d--~~ln~~i~~~a~~ 92 (205)
T TIGR01470 77 TDD--EELNRRVAHAARA 92 (205)
T ss_pred CCC--HHHHHHHHHHHHH
Confidence 665 3 22445555544
No 397
>PRK07050 cystathionine beta-lyase; Provisional
Probab=90.74 E-value=6.7 Score=36.13 Aligned_cols=132 Identities=10% Similarity=-0.001 Sum_probs=72.9
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+.-.|.+.+|-..+++..+++.++-..+ ++....+.+...+++ |.+|++.++.=....+.....+..+.-++.++..
T Consensus 60 ~r~~~pt~~~Le~~lA~l~g~~~~l~~~s-gt~Ai~~~l~al~~~-GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 60 GLHATPTSLALAQRLAEIEGGRHALLQPS-GLAAISLVYFGLVKA-GDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEecc-HHHHHHHHHHHHhCC-CCEEEEecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 45677888999999999989888875543 244444444333454 8899888876222232233333311123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
+..++-..+.....+|++..+....-....++.+.+. .+..|..|++||++..+
T Consensus 138 ~~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~i--a~~~gi~livD~a~a~~ 192 (394)
T PRK07050 138 LIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAA--ARARGVVTAIDNTYSAG 192 (394)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHH--HHHcCCEEEEECCcccc
Confidence 2222222223456899987655111223334444443 22348899999997543
No 398
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=90.70 E-value=5.9 Score=34.72 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=59.6
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~ 113 (220)
+...+.+.||..|+|++|..++.||.+. +.+|+++..+ ++..+.+++. +....+.....+..+.+... ..++
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~---g~~v~~~~~s-~~~~~~~~~~--g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR---GARVIVVDID-DERLEFAREL--GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEECCC-HHHHHHHHHh--CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 3445678899889877899999999875 6789999888 8877777542 22112233333333333222 2468
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|++|--... ...+..+.+. |++ +|.++.
T Consensus 229 d~vld~~g~-----~~~~~~~~~~--l~~-~G~~i~ 256 (337)
T cd08261 229 DVVIDATGN-----PASMEEAVEL--VAH-GGRVVL 256 (337)
T ss_pred CEEEECCCC-----HHHHHHHHHH--Hhc-CCEEEE
Confidence 988643222 2334555555 555 444443
No 399
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=90.67 E-value=3.7 Score=34.09 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCEEEEEcC-CchHHHHHH--HHHHcCC-CCcEEEEEeCCchhHH
Q 042616 41 AQLIVMACS-SIAVSRTLA--LVAAARQ-TGGRVVCILSGVIGDI 81 (220)
Q Consensus 41 a~~ILEIGt-g~~G~sTl~--LA~A~~~-~~grV~tIE~d~~~~~ 81 (220)
.+.|.-.++ |++|-||+. ||.++.. .+.+|.-||.| +..-
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D-~~~~ 78 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD-LRRP 78 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC-CCCh
Confidence 344444432 568888865 6666543 37799999999 7653
No 400
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.65 E-value=4.5 Score=34.93 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=58.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc--CCCc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD--YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~--~~~~ 113 (220)
...+.+.++-.|+|++|..++.+|.+. +.+|++++.+ ++..+.+++ + +....+.... .+..+.+... ...+
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAA---GARVIATSSS-DEKLERAKA-L-GADHVINYRTTPDWGEEVLKLTGGRGV 230 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHH-c-CCCEEEcCCcccCHHHHHHHHcCCCCC
Confidence 445567777678777888888888875 6789999999 887777766 2 3211122222 2333333332 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
|+++ |+.. . ..++.+.+. |.+ +|.++
T Consensus 231 d~~i-~~~~--~---~~~~~~~~~--l~~-~G~~v 256 (336)
T cd08276 231 DHVV-EVGG--P---GTLAQSIKA--VAP-GGVIS 256 (336)
T ss_pred cEEE-ECCC--h---HHHHHHHHh--hcC-CCEEE
Confidence 9888 5433 2 345566666 665 44444
No 401
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.63 E-value=7.9 Score=34.34 Aligned_cols=99 Identities=17% Similarity=0.139 Sum_probs=59.5
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-c---cCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-R---YANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g---~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
+|.-||+|.+|.+....+.. ......|+-+|.+ ++.++....-+. . ....+.+..++..+ + ...|+|++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~-~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l----~~aDIVIi 74 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-QGIADELVLIDIN-EEKAEGEALDLEDALAFLPSPVKIKAGDYSD-C----KDADIVVI 74 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCC-cchhhHhHhhHHHHhhccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence 67889998788766654432 2212589999999 666544333332 1 12345555555443 3 46899999
Q ss_pred cCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 119 DCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 119 D~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
-+...+ .-+.++.+.+.+. .|++=+|++-|
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~---~~~~~vivvsN 118 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS---GFDGIFLVASN 118 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEecC
Confidence 776521 1146666777776 36565666655
No 402
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.62 E-value=2.9 Score=34.95 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhcccC--CcEEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRYA--NCIEFVK 99 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~~--~~Ve~v~ 99 (220)
+..+|+-+|+|+.|...+.....+. -++++-+|.|.- .+++.+.+.++.+. -+++.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 4567999999888887665333322 389999998832 23344455554222 2344444
Q ss_pred cchh-hhhhhcCCCccEEEEcCCC
Q 042616 100 GDAQ-KLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 100 gda~-~~L~~~~~~~D~VfiD~~k 122 (220)
.... +.++.....+|+||.-.+.
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d~ 121 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTDN 121 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCCC
Confidence 4332 2233334689987644333
No 403
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.52 E-value=3.8 Score=36.12 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=80.4
Q ss_pred CCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcch
Q 042616 23 GKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDA 102 (220)
Q Consensus 23 ~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda 102 (220)
.+......+|.+.-..++... |...+| |.+..+..++. ..|+...|.. |+-+..-+++|.+- .++.+..+|.
T Consensus 72 ~lpa~l~~yl~~i~~lN~~~~-l~~YpG----SP~lA~~llR~-qDRl~l~ELH-p~D~~~L~~~f~~d-~~vrv~~~DG 143 (279)
T COG2961 72 DLPAELEPYLDAVRQLNPGGG-LRYYPG----SPLLARQLLRE-QDRLVLTELH-PSDAPLLRNNFAGD-RRVRVLRGDG 143 (279)
T ss_pred CchHHHHHHHHHHHHhCCCCC-cccCCC----CHHHHHHHcch-hceeeeeecC-ccHHHHHHHHhCCC-cceEEEecCc
Confidence 344455566666655555443 666665 23333333343 7899999999 99999999999843 5799999998
Q ss_pred hhhhhhcC---CCccEEEEcCCCCC-ccHHHHHHHHHhhcCCC--CCCEEEEEecCCCC
Q 042616 103 QKLLMGDY---RGADFVLIDCNIDI-DGHKNVFRAAKESVMHG--SGAGVIVGYNALPK 155 (220)
Q Consensus 103 ~~~L~~~~---~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~--~~Ggviv~dNv~~~ 155 (220)
-..+.... +.=-+|+||.+-+. .+|.++.+.+.+. ++ +.|.+.+-+-+..+
T Consensus 144 ~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~--~kRf~~g~yaiWYPik~r 200 (279)
T COG2961 144 FLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEA--YKRFATGTYAIWYPIKDR 200 (279)
T ss_pred HHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHH--HHhhcCceEEEEEeecch
Confidence 77664332 33579999998722 5787777666554 22 44666666655543
No 404
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=90.49 E-value=5.7 Score=36.47 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+...|...+|=..+++..+++.++-..+| +....+.+...+++ +.+|++-...=+......+..+....-++.++.-
T Consensus 57 r~~~p~~~~le~~la~l~g~~~~v~~ssG-~~Ai~~al~al~~~-Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 57 RFTNPTVTMFQERLAALEGAEACVATASG-MAAILAVVMALLQA-GDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 45678888888888888888877755432 33333333323444 7788776554122233333333322124555433
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.++..+|++..+... .+..++.+.+. ..|..|++||++.
T Consensus 135 d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~------~~gi~livD~t~~ 186 (390)
T PRK08133 135 DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAH------AAGALLVVDNCFC 186 (390)
T ss_pred CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHH------HcCCEEEEECCCc
Confidence 334433222356789998765411 12233333333 3489999999874
No 405
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=90.49 E-value=6.2 Score=36.60 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+...|...+|-..+++..+.+..+-.++| +......|...+.+ +.+|++.+..=+.........+....-.+.++..
T Consensus 52 sr~~~p~~~~le~~lA~l~g~~~~v~~~sG-~~Ai~~al~~l~~~-Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 52 SRLMNPTTDVLEQRIAALEGGVAALAVASG-QAAITYAILNLAQA-GDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred ECCCChhHHHHHHHHHHHhCCCeEEEEccH-HHHHHHHHHHHhCC-CCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 456778888999999998887777655543 33333333323444 7888876653112222223333311123444332
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.+..++|++...... .+..++.+.+. ..|..+|+||+...
T Consensus 130 ~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~------~~~i~livD~t~~~ 183 (418)
T TIGR01326 130 DDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAH------AHGVPLIVDNTFAT 183 (418)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH------HcCCEEEEECCCch
Confidence 333333222356789999865411 12233333333 34899999998753
No 406
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=90.46 E-value=4.9 Score=34.03 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=57.6
Q ss_pred HHhhCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CC
Q 042616 35 LAAGNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YR 111 (220)
Q Consensus 35 La~~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~ 111 (220)
++...+.+.||-.| +|.+|..++.+|.+. +.+|+++..+ ++..+.+++ + +....+.....+..+.+..+ ..
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKAL---GATVIGTVSS-EEKAELARA-A-GADHVINYRDEDFVERVREITGGR 204 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHc---CCEEEEEcCC-HHHHHHHHH-C-CCCEEEeCCchhHHHHHHHHcCCC
Confidence 34455678899888 466888888888875 6789999988 887777754 2 22111111111222222222 24
Q ss_pred CccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 112 GADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 112 ~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
.+|++| |+-. . ...+.+.+. +++ +|.++
T Consensus 205 ~~d~vl-~~~~--~---~~~~~~~~~--l~~-~g~~v 232 (320)
T cd05286 205 GVDVVY-DGVG--K---DTFEGSLDS--LRP-RGTLV 232 (320)
T ss_pred CeeEEE-ECCC--c---HhHHHHHHh--hcc-CcEEE
Confidence 699887 6544 2 234555555 555 45444
No 407
>PLN02650 dihydroflavonol-4-reductase
Probab=90.45 E-value=1.1 Score=40.07 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhh--hhhhcCCCccE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQK--LLMGDYRGADF 115 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~--~L~~~~~~~D~ 115 (220)
..++||-.| + +|+.+.+|+..+...+-+|+++..+ +...+.....+. +...+++++.+|..+ .+......+|.
T Consensus 4 ~~k~iLVTG-a-tGfIGs~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 4 QKETVCVTG-A-SGFIGSWLVMRLLERGYTVRATVRD-PANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCEEEEeC-C-cHHHHHHHHHHHHHCCCEEEEEEcC-cchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 457899888 3 7999999988887767799988888 655443333222 222468899998754 23333346798
Q ss_pred EEEcC
Q 042616 116 VLIDC 120 (220)
Q Consensus 116 VfiD~ 120 (220)
||--+
T Consensus 81 ViH~A 85 (351)
T PLN02650 81 VFHVA 85 (351)
T ss_pred EEEeC
Confidence 88544
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.42 E-value=2.3 Score=40.06 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=58.1
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcC-CCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE----cchhhhhh----
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAAR-QTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK----GDAQKLLM---- 107 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~-~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~----gda~~~L~---- 107 (220)
|..|+-+|..|+|=+|.. ||..+. ..+.+|.-|+.| ..+.. |.+.++ +-...+.+.. .++.++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D-~~R~~-a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD-LYRPA-AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc-ccchH-HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 556778888669999885 565543 235677666666 44433 222221 1001122222 23333321
Q ss_pred hc-CCCccEEEEcCCCCCc---cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 108 GD-YRGADFVLIDCNIDID---GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 108 ~~-~~~~D~VfiD~~k~~~---~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
.. ...+|+|++|.+-+.. .....+..+... +.|.+.++|.|..
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~--~~p~e~lLVvda~ 223 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI--LNPDEILLVVDAM 223 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh--hCCceEEEEEecc
Confidence 11 3579999999987221 223444455555 6676777777754
No 409
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.37 E-value=3.7 Score=40.15 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=54.9
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-------cc--CCcEEEEEcchhhh--
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-------RY--ANCIEFVKGDAQKL-- 105 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-------g~--~~~Ve~v~gda~~~-- 105 (220)
..+..+.||-+|. +|..+.+++..+...|.+|+++..+ ++.++...+.+. +. ..+++++.+|..+.
T Consensus 76 ~~~~gKvVLVTGA--TGgIG~aLAr~LLk~G~~Vval~Rn-~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 76 DTKDEDLAFVAGA--TGKVGSRTVRELLKLGFRVRAGVRS-AQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccCCCCEEEEECC--CCHHHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3446678998883 5777777777776557899999999 776654443332 11 13588999998652
Q ss_pred hhhcCCCccEEEEcCC
Q 042616 106 LMGDYRGADFVLIDCN 121 (220)
Q Consensus 106 L~~~~~~~D~VfiD~~ 121 (220)
+....+.+|.||.-+.
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 2233467899887654
No 410
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=90.35 E-value=0.53 Score=40.90 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=45.6
Q ss_pred CcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEE
Q 042616 67 GGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGV 146 (220)
Q Consensus 67 ~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggv 146 (220)
..+|+++|++ ++.++.|++. |. +.-...+ .+.+ ..+|+|++-.+. ....++++.+.+. +++ | .
T Consensus 11 ~~~v~g~d~~-~~~~~~a~~~--g~---~~~~~~~-~~~~----~~~DlvvlavP~--~~~~~~l~~~~~~--~~~-~-~ 73 (258)
T PF02153_consen 11 DVEVYGYDRD-PETLEAALEL--GI---IDEASTD-IEAV----EDADLVVLAVPV--SAIEDVLEEIAPY--LKP-G-A 73 (258)
T ss_dssp TSEEEEE-SS-HHHHHHHHHT--TS---SSEEESH-HHHG----GCCSEEEE-S-H--HHHHHHHHHHHCG--S-T-T-S
T ss_pred CeEEEEEeCC-HHHHHHHHHC--CC---eeeccCC-HhHh----cCCCEEEEcCCH--HHHHHHHHHhhhh--cCC-C-c
Confidence 3799999999 8888777654 32 2222233 3333 357999999998 8889999999997 643 4 5
Q ss_pred EEEecCCCCC
Q 042616 147 IVGYNALPKG 156 (220)
Q Consensus 147 iv~dNv~~~g 156 (220)
+|.|=.-.+.
T Consensus 74 iv~Dv~SvK~ 83 (258)
T PF02153_consen 74 IVTDVGSVKA 83 (258)
T ss_dssp EEEE--S-CH
T ss_pred EEEEeCCCCH
Confidence 6666333344
No 411
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.35 E-value=0.31 Score=44.92 Aligned_cols=135 Identities=11% Similarity=-0.033 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHhcCCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 7 ENATKAYLQALKMGKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 7 e~a~~aY~~~l~~~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
+++.+|||.+--..+...=..+-.-|..-..-..|+.|||+|.| .|.-.+++-.-. ++-..++-+|.+ |..-+..-.
T Consensus 80 dm~V~Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~G-Pgtgl~A~n~i~-Pdl~sa~ile~s-p~lrkV~~t 156 (484)
T COG5459 80 DMAVKAYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAG-PGTGLWALNDIW-PDLKSAVILEAS-PALRKVGDT 156 (484)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCC-CchhhhhhcccC-CCchhhhhhccC-HHHHHHHHH
Confidence 45778888872222111101111112222234568999999985 665433333333 324566777777 554333322
Q ss_pred Hhcc-cCCcEEEEEcchhh-hhhhc--CCCccEEEE------cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 87 SLGR-YANCIEFVKGDAQK-LLMGD--YRGADFVLI------DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 87 ~l~g-~~~~Ve~v~gda~~-~L~~~--~~~~D~Vfi------D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
..+. ...+.....+|..+ -+ .+ .+.|+++++ |... .....+++.+... +.| ||.+|.-
T Consensus 157 l~~nv~t~~td~r~s~vt~dRl-~lp~ad~ytl~i~~~eLl~d~~e--k~i~~~ie~lw~l--~~~-gg~lViv 224 (484)
T COG5459 157 LAENVSTEKTDWRASDVTEDRL-SLPAADLYTLAIVLDELLPDGNE--KPIQVNIERLWNL--LAP-GGHLVIV 224 (484)
T ss_pred HHhhcccccCCCCCCccchhcc-CCCccceeehhhhhhhhccccCc--chHHHHHHHHHHh--ccC-CCeEEEE
Confidence 2221 11223333344322 22 11 245777654 3332 3345577777777 766 6665543
No 412
>PRK07503 methionine gamma-lyase; Provisional
Probab=90.34 E-value=5.2 Score=36.93 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|=..+++..++...+-.++| +....+.+...+.+ |.+|++..+. -. .....+..+....-.+.++-.
T Consensus 61 r~~~p~~~~le~~lA~l~g~~~~i~~~sG-~~Al~~~l~~ll~~-Gd~Viv~~~~-y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 61 RISNPTLALLEQRMASLEGGEAAVALASG-MGAITATLWTLLRP-GDEVIVDQTL-YGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEcCH-HHHHHHHHHHHcCC-CCEEEEccCc-cchHHHHHHHHHhhCCEEEEEeCC
Confidence 45778889999999998887776655543 33333333323444 7788876553 21 222222333321113444332
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+..+..+|++..+... .+..++.+.+.+ .|.+||.||+...
T Consensus 138 ~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~------~gi~lIvD~a~a~ 191 (403)
T PRK07503 138 TDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHG------AGAKVVVDNTYCT 191 (403)
T ss_pred CCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHH------cCCEEEEECCCcc
Confidence 334433333346789998644311 133333343332 4889999999853
No 413
>PLN02427 UDP-apiose/xylose synthase
Probab=90.33 E-value=1 Score=40.88 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCC-cEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhh--hhhcCCCcc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTG-GRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKL--LMGDYRGAD 114 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~-grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~--L~~~~~~~D 114 (220)
.++++||-+| | +|+.+-+|++.+...+ -+|++++.+ ++.......... ....+++++.+|..+. +......+|
T Consensus 12 ~~~~~VlVTG-g-tGfIGs~lv~~L~~~~g~~V~~l~r~-~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 12 IKPLTICMIG-A-GGFIGSHLCEKLMTETPHKVLALDVY-NDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred ccCcEEEEEC-C-cchHHHHHHHHHHhcCCCEEEEEecC-chhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 3467899988 3 7888888888887643 489999987 554322111100 1224699999987542 333345689
Q ss_pred EEEEcC
Q 042616 115 FVLIDC 120 (220)
Q Consensus 115 ~VfiD~ 120 (220)
.||-=+
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 888544
No 414
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=90.22 E-value=5 Score=34.81 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=58.4
Q ss_pred hCCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccE
Q 042616 38 GNNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADF 115 (220)
Q Consensus 38 ~~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~ 115 (220)
..+.+.||-.| +|.+|..++.+|++. +.+|+++..+ ++..+.+++.+. ....+.....+..+.+... .+.+|.
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~---G~~vi~~~~~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLL---GARVVGIAGS-DEKCRWLVEELG-FDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHhhcC-CceEEecCChhHHHHHHHhccCCceE
Confidence 34567888777 466888888888774 6799999999 888777766442 2111222222222222222 256997
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+| |+-- . ..++.+.++ +++ +|.++.
T Consensus 218 vi-~~~g--~---~~~~~~~~~--l~~-~G~~v~ 242 (329)
T cd05288 218 YF-DNVG--G---EILDAALTL--LNK-GGRIAL 242 (329)
T ss_pred EE-Ecch--H---HHHHHHHHh--cCC-CceEEE
Confidence 76 6644 2 356666776 655 555553
No 415
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=90.20 E-value=4.1 Score=38.04 Aligned_cols=127 Identities=16% Similarity=0.065 Sum_probs=68.8
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+...|...+|-..++...+++..+-.++| +...++.+.....+ +.+|++.+..=..........+....-.+.++..
T Consensus 53 ~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG-~~Ai~~al~al~~~-Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 53 TRIMNPTNDVLEQRVAALEGGVGALAVASG-MAAITYAIQTIAEA-GDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred cCCCCchHHHHHHHHHHHhCCCceeEehhH-HHHHHHHHHHHhCC-CCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 356778889999999998887777655533 33333333323344 7888887664111233333333311112444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.....+|++..+... . +..++.+.+.+ .|.+||+||+...
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~------~~i~vVvD~a~a~ 184 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHR------HGVPLIVDNTVAT 184 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHH------cCCEEEEECCCcc
Confidence 333332222345789999754311 2 22333333333 4889999999853
No 416
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=90.17 E-value=4.4 Score=35.66 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=59.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc-CCCcc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD-YRGAD 114 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~-~~~~D 114 (220)
...+.++||-.|+|++|..++.+|++. +.+|+++..+ ++..+.+++ + |...-+.... .+..+.+..+ .+.+|
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~---G~~vi~~~~~-~~~~~~~~~-~-g~~~~i~~~~~~~~~~~~~~~~~~~~d 235 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL---GARVIAVDID-DDKLELARE-L-GAVATVNASEVEDVAAAVRDLTGGGAH 235 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCeEEEEeCC-HHHHHHHHH-h-CCCEEEccccchhHHHHHHHHhCCCCC
Confidence 345567898889888999998888875 6689999999 887777754 2 3311122222 2322222222 23799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++| |+-. . ...++.+.+. +++ +|.++.
T Consensus 236 ~vi-~~~g--~--~~~~~~~~~~--l~~-~g~~i~ 262 (345)
T cd08260 236 VSV-DALG--I--PETCRNSVAS--LRK-RGRHVQ 262 (345)
T ss_pred EEE-EcCC--C--HHHHHHHHHH--hhc-CCEEEE
Confidence 777 6543 1 2334555555 555 555554
No 417
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.14 E-value=0.88 Score=42.41 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=58.8
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----ccC---------CcEEEEEcchhhhhhh
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RYA---------NCIEFVKGDAQKLLMG 108 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~~---------~~Ve~v~gda~~~L~~ 108 (220)
+|-.+|||++|.++..+.... |-.|+|+|.| +++++..++... |++ .+..| .-|..+.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~---GHeVv~vDid-~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f-Ttd~~~a~-- 74 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL---GHEVVCVDID-ESKVELLNKGISPIYEPGLEELLKENLASGRLRF-TTDYEEAV-- 74 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc---CCeEEEEeCC-HHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE-EcCHHHHH--
Confidence 567789888888776544332 5589999999 999887665432 221 11222 22333333
Q ss_pred cCCCccEEEEcCCCCCc-----c--H-HHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 109 DYRGADFVLIDCNIDID-----G--H-KNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 109 ~~~~~D~VfiD~~k~~~-----~--y-~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|++||--+.++. + | ....+.+.+. + ++..+||...+...|
T Consensus 75 --~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~--~-~~~~vvV~KSTVPvG 125 (414)
T COG1004 75 --KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEI--L-DGKAVVVIKSTVPVG 125 (414)
T ss_pred --hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhh--c-CCCeEEEEcCCCCCC
Confidence 356888886544221 1 1 3344555555 4 334788876555544
No 418
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.13 E-value=5.8 Score=33.60 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=57.7
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCcc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGAD 114 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D 114 (220)
+...+.++||-.|+|.+|..++.+|.+.. .+ |++++.+ ++..+.+++. |..+.+..... ..++ ...+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~~~-~~~~~~~~~~--g~~~~~~~~~~---~~~~--~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG---AREVVGVDPD-AARRELAEAL--GPADPVAADTA---DEIG--GRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---CCcEEEECCC-HHHHHHHHHc--CCCccccccch---hhhc--CCCCC
Confidence 34556788988898888999998998763 45 9999999 8888777764 21111111111 1111 35799
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++|--... ...++...+. +++ +|.++.
T Consensus 162 ~vl~~~~~-----~~~~~~~~~~--l~~-~g~~~~ 188 (277)
T cd08255 162 VVIEASGS-----PSALETALRL--LRD-RGRVVL 188 (277)
T ss_pred EEEEccCC-----hHHHHHHHHH--hcC-CcEEEE
Confidence 88743233 2245555665 555 565553
No 419
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=90.11 E-value=3.2 Score=37.15 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~ 115 (220)
.+.++||-.|+|.+|..++.+|++. +.+ +++++.+ ++..+.+++ + +...-+.....+..+.+... ...+|+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~---G~~~vi~~~~s-~~~~~~~~~-~-g~~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF---GASPIIAVDVR-DEKLAKAKE-L-GATHTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-h-CCceEecCCcccHHHHHHHHhCCCCCCE
Confidence 5567888778888999999999875 445 9999998 777777654 2 22111111122222222222 356998
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|| |+-. .. ...+.+.+. |++ +|.++.
T Consensus 260 vl-d~vg--~~--~~~~~~~~~--l~~-~G~~v~ 285 (367)
T cd08263 260 VV-EALG--KP--ETFKLALDV--VRD-GGRAVV 285 (367)
T ss_pred EE-EeCC--CH--HHHHHHHHH--Hhc-CCEEEE
Confidence 87 6644 22 245556666 655 555543
No 420
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.11 E-value=3.2 Score=35.24 Aligned_cols=81 Identities=17% Similarity=0.048 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCc------------------hhHHHHHHHHhcccC--CcEEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGV------------------IGDIDASKKSLGRYA--NCIEFVK 99 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~------------------~~~~~~Ar~~l~g~~--~~Ve~v~ 99 (220)
+..+|+-+|+|++|...+.....+. -|+++-+|.|. ..+++.+++.++.+. -+|+.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G--vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG--VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 4567999999888887775443332 38888886662 234455555555221 2355555
Q ss_pred cch-hhhhhhcCCCccEEEEcCCC
Q 042616 100 GDA-QKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 100 gda-~~~L~~~~~~~D~VfiD~~k 122 (220)
... .+-+..+...+|+||.-.+.
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d~ 121 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTDN 121 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCCC
Confidence 543 12222334579988865554
No 421
>PRK10037 cell division protein; Provisional
Probab=90.09 E-value=2.6 Score=36.08 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
||+|-+|+. ||.++...|-+|.-||.| ++.
T Consensus 11 GGvGKTT~a~nLA~~La~~G~rVLlID~D-~q~ 42 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGENVLVIDAC-PDN 42 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEeCC-hhh
Confidence 568888754 777777657799999999 874
No 422
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.08 E-value=3 Score=39.28 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=57.0
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEE----cchhh----hhhh
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVK----GDAQK----LLMG 108 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~----gda~~----~L~~ 108 (220)
+..|+-+|-.|+|=+|.. ||..+...+.+|.-|+.| +.+. .|...++ +-...+.+.. .|+.. .+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D-~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD-TFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc-ccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 566777886558988775 776665545577666666 5544 2333332 1112243332 24322 2222
Q ss_pred c-CCCccEEEEcCCCCCccHHHHHHHHHhhc-CCCCCCEEEEEe
Q 042616 109 D-YRGADFVLIDCNIDIDGHKNVFRAAKESV-MHGSGAGVIVGY 150 (220)
Q Consensus 109 ~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~-~L~~~Ggviv~d 150 (220)
+ ...+|+||||..-+...-.+.++.+.... ...|.-.++|.|
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVld 221 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMD 221 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEec
Confidence 2 25799999999863232234444444420 044544556665
No 423
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.06 E-value=4.9 Score=32.91 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=62.1
Q ss_pred CCCCEEEEEc-CCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEc-chhhhhhhcCCCccE
Q 042616 39 NNAQLIVMAC-SSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKG-DAQKLLMGDYRGADF 115 (220)
Q Consensus 39 ~~a~~ILEIG-tg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~g-da~~~L~~~~~~~D~ 115 (220)
.+.++++-+| ||++|..... .+...+.+|+-+.++ ++.++...+.+. .....+..... +..+ +.......|+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~---~l~~~g~~V~l~~R~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~di 100 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAV---LLAREGARVVLVGRD-LERAQKAADSLRARFGEGVGAVETSDDAA-RAAAIKGADV 100 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHH---HHHHCCCEEEEEcCC-HHHHHHHHHHHHhhcCCcEEEeeCCCHHH-HHHHHhcCCE
Confidence 3557899998 3555644433 322336689889999 777666555443 22222333322 2222 2232356899
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC---CccceEEEeeecCCcEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG---SWRGYKTHFLPIGEGLLV 174 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g---~~~~~~s~~lPig~Gl~v 174 (220)
||.-.+. +.+. ....... . +.+.+++|=...+- ....++...+++..|+.+
T Consensus 101 Vi~at~~--g~~~--~~~~~~~--~--~~~~vv~D~~~~~~~~~~~~~~~~~~~~~~g~~~~ 154 (194)
T cd01078 101 VFAAGAA--GVEL--LEKLAWA--P--KPLAVAADVNAVPPVGIEGIDVPDKGVDREGKVPY 154 (194)
T ss_pred EEECCCC--Ccee--chhhhcc--c--CceeEEEEccCCCCCCcccccccCCceecCCCeEE
Confidence 8887666 5541 1112222 2 23677777433321 111334444555555433
No 424
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.05 E-value=8.6 Score=35.29 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=63.6
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEE-cchhhhhhhc--CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVK-GDAQKLLMGD--YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~--~~~ 112 (220)
...+.+.||-.|+|.+|..++.+|++. +.+ +++++.+ +++.+.|++. |. +.+.... .+..+.+..+ ...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~---Ga~~vi~~d~~-~~r~~~a~~~--Ga-~~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLL---GAAVVIVGDLN-PARLAQARSF--GC-ETVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCceEEEeCCC-HHHHHHHHHc--CC-eEEecCCcccHHHHHHHHcCCCC
Confidence 345678888789988999998888875 444 6667888 8889988874 33 2111111 1333333222 246
Q ss_pred ccEEEEcCCCCCc-----------cHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 113 ADFVLIDCNIDID-----------GHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 113 ~D~VfiD~~k~~~-----------~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+|++| |+--. . +-...++.+... +++ ||.|+.-.+.
T Consensus 255 ~Dvvi-d~~G~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~G~i~~~G~~ 301 (393)
T TIGR02819 255 VDCAV-DCVGF-EARGHGHDGKKEAPATVLNSLMEV--TRV-GGAIGIPGLY 301 (393)
T ss_pred CcEEE-ECCCC-ccccccccccccchHHHHHHHHHH--hhC-CCEEEEeeec
Confidence 89776 43320 1 012467777777 765 7777765443
No 425
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.04 E-value=2.6 Score=39.65 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEE-Ecchhhh---hhhcC--
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFV-KGDAQKL---LMGDY-- 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v-~gda~~~---L~~~~-- 110 (220)
+++.|+=+|-+|+|=+|+. ||..+...+.+|.-|+.| +.++....+... +-...+.++ ..+..++ +..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 4567888897679999986 554444334567667777 665443333222 111224443 3344333 32222
Q ss_pred CCccEEEEcCCCCCccHHHHHHHHHhhc-CCCCCCEEEEEecCCCCC-C---cc-ceEEEeeecCCcEEEEEEeec
Q 042616 111 RGADFVLIDCNIDIDGHKNVFRAAKESV-MHGSGAGVIVGYNALPKG-S---WR-GYKTHFLPIGEGLLVTRIGEN 180 (220)
Q Consensus 111 ~~~D~VfiD~~k~~~~y~~~l~~l~~~~-~L~~~Ggviv~dNv~~~g-~---~~-~~~s~~lPig~Gl~v~~~~~~ 180 (220)
..+|+||||..-+...-.+.++.+.... ...|..-++| -++...+ . .. .|.. +++ +|+.++..-.+
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV-LsATtk~~d~~~i~~~F~~--~~i-dglI~TKLDET 390 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT-LSASMKSKDMIEIITNFKD--IHI-DGIVFTKFDET 390 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE-ECCccChHHHHHHHHHhcC--CCC-CEEEEEcccCC
Confidence 2589999999873222233333333320 0234334444 3443332 1 11 4543 443 67877777654
No 426
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.04 E-value=4.9 Score=36.09 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=58.4
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc--chhhhhhhc-CCC
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG--DAQKLLMGD-YRG 112 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g--da~~~L~~~-~~~ 112 (220)
...+.++||-.|+|.+|..++.+|++. +. .|++++.+ ++..+.+++ + |....+..... +..+.+..+ .+.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~---G~~~v~~~~~~-~~~~~~~~~-~-g~~~~v~~~~~~~~~~~~l~~~~~~~ 253 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAA---GASRIIAVDIN-KDKFEKAKQ-L-GATECINPRDQDKPIVEVLTEMTDGG 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-h-CCCeecccccccchHHHHHHHHhCCC
Confidence 345568888889888888888888875 44 58889988 888887754 3 22111222222 222222121 357
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCC-CCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHG-SGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~-~~Ggviv~ 149 (220)
+|+++ |+-- . ...+..+.+. ++ + +|.++.
T Consensus 254 ~d~vi-d~~g--~--~~~~~~~~~~--l~~~-~G~~v~ 283 (365)
T cd05279 254 VDYAF-EVIG--S--ADTLKQALDA--TRLG-GGTSVV 283 (365)
T ss_pred CcEEE-ECCC--C--HHHHHHHHHH--hccC-CCEEEE
Confidence 99887 6643 1 2345556666 65 5 565554
No 427
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=90.03 E-value=0.86 Score=40.83 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhcc----cCCcEEEEEcchhhh--hhhcCC
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLGR----YANCIEFVKGDAQKL--LMGDYR 111 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~g----~~~~Ve~v~gda~~~--L~~~~~ 111 (220)
++.++||-+| | +|+...+|+..+...+-+|++++.. ...... ....... ...+++++.+|..+. +..+..
T Consensus 13 ~~~~~vlVtG-a-tGfiG~~lv~~L~~~g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 13 LAPKRWLITG-V-AGFIGSGLLEELLFLNQTVIGLDNF-STGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccCCEEEEEC-C-ccHHHHHHHHHHHHCCCEEEEEeCC-CCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 4457899988 3 7999888888887656689999986 432221 1111111 114688999998642 333345
Q ss_pred CccEEEEcCC
Q 042616 112 GADFVLIDCN 121 (220)
Q Consensus 112 ~~D~VfiD~~ 121 (220)
.+|.||-=+.
T Consensus 90 ~~d~ViHlAa 99 (348)
T PRK15181 90 NVDYVLHQAA 99 (348)
T ss_pred CCCEEEECcc
Confidence 6899885553
No 428
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=89.99 E-value=6.6 Score=35.92 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|-..+++..++..++-.++| +....+.+. .+.+ +.+|++.+.. -.. ....+..+....-++.++..
T Consensus 43 r~~~p~~~~le~~la~l~g~~~~l~~~sG-~~al~~~l~-ll~~-Gd~Vl~~~~~-y~~~~~~~~~~~~~~G~~v~~vd~ 118 (378)
T TIGR01329 43 RSGNPTRTALESLLAKLDKADRAFAFSSG-MAALDVITR-LLNN-GDEIIAGDDL-YGGTDRLLTQVVPRSGVVVVHVDT 118 (378)
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHH-HhCC-CCEEEEcCCC-chHHHHHHHHHHHHcCcEEEEeCC
Confidence 44567788888888888888777766643 333333333 4444 7888877655 322 22223323212123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC-c---cHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI-D---GHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~-~---~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.....+|++..+... . +..++.+.+.+ .|.++|+||+..
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~------~g~~vivD~a~~ 171 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHA------QNALVVVDNTMM 171 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHH------cCCEEEEECCCc
Confidence 344443333356789998876511 1 33333444333 489999999874
No 429
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.89 E-value=1.6 Score=36.41 Aligned_cols=77 Identities=17% Similarity=0.099 Sum_probs=49.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEcchhhh------hhhcCCCcc
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKGDAQKL------LMGDYRGAD 114 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~gda~~~------L~~~~~~~D 114 (220)
+++|-+|+ +|..+..++..+.+.|.+|+.++.+ ++..+...+.+. ....+++++..|..+. +......+|
T Consensus 2 ~~vlItGa--s~giG~~~a~~l~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGA--TSDIARACARRYAAAGARLYLAARD-VERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcC--CcHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 46888883 4666666666666557799999999 766655444443 2235788888876542 222224579
Q ss_pred EEEEcCC
Q 042616 115 FVLIDCN 121 (220)
Q Consensus 115 ~VfiD~~ 121 (220)
.++..+.
T Consensus 79 ~vv~~ag 85 (243)
T PRK07102 79 IVLIAVG 85 (243)
T ss_pred EEEECCc
Confidence 9996543
No 430
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.89 E-value=3.3 Score=34.61 Aligned_cols=92 Identities=9% Similarity=-0.045 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhcccC--CcEEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRYA--NCIEFVK 99 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~~--~~Ve~v~ 99 (220)
+..+|+-+|+|+.|...+.....+. -++++-+|.|.- .+++.+++.++.+. -+|+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 4466888999878877665333322 388998987721 12345556665222 2355555
Q ss_pred cchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHH
Q 042616 100 GDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAK 135 (220)
Q Consensus 100 gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~ 135 (220)
....+..+.....||+|+...+. .....++..+-
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~ln~~c 131 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATELS--RAELVKINELC 131 (197)
T ss_pred cCccccHHHHHhCCCEEEECCCC--HHHHHHHHHHH
Confidence 44433233334689998865554 33333344443
No 431
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=89.79 E-value=3.7 Score=36.40 Aligned_cols=103 Identities=8% Similarity=0.033 Sum_probs=60.1
Q ss_pred hhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcE-EEEEcchhhhhhhc--CCCc
Q 042616 37 AGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCI-EFVKGDAQKLLMGD--YRGA 113 (220)
Q Consensus 37 ~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~V-e~v~gda~~~L~~~--~~~~ 113 (220)
...+.+.||-.|+|++|..++.+|+++. ...+++++.+ ++..+.+++. +. +.+ .....+..+.+..+ ...+
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G--~~~v~~~~~~-~~~~~~~~~~--g~-~~v~~~~~~~~~~~~~~~~~~~~v 244 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKN--PKKLIVLDLK-DERLALARKF--GA-DVVLNPPEVDVVEKIKELTGGYGC 244 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCC-HHHHHHHHHc--CC-cEEecCCCcCHHHHHHHHhCCCCC
Confidence 3455677877888889999999998863 2467889998 7777666553 32 211 11112333323232 2358
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
|++| |+-. .. ..+..+.+. +++ +|.++.-..+
T Consensus 245 dvvl-d~~g--~~--~~~~~~~~~--l~~-~G~~v~~g~~ 276 (350)
T cd08256 245 DIYI-EATG--HP--SAVEQGLNM--IRK-LGRFVEFSVF 276 (350)
T ss_pred CEEE-ECCC--Ch--HHHHHHHHH--hhc-CCEEEEEccC
Confidence 9665 7644 22 235556666 655 6666654433
No 432
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.75 E-value=5.8 Score=34.99 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=55.0
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
.+..+++-.|+|.+|..++.+|++. +.++++++.+ ++..+.+++ + +. +. ++.....+........+|++|
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~-~~--vi~~~~~~~~~~~~~~~d~v~- 237 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKAL---GAEVTAFSRS-PSKKEDALK-L-GA-DE--FIATKDPEAMKKAAGSLDLII- 237 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc---CCeEEEEcCC-HHHHHHHHH-c-CC-cE--EecCcchhhhhhccCCceEEE-
Confidence 4456777688888898888888875 5689999999 888877754 2 21 11 111111111112246799888
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+-. .. ..++.+.+. |++.|.++.+
T Consensus 238 ~~~g--~~--~~~~~~~~~--l~~~G~~v~~ 262 (337)
T cd05283 238 DTVS--AS--HDLDPYLSL--LKPGGTLVLV 262 (337)
T ss_pred ECCC--Cc--chHHHHHHH--hcCCCEEEEE
Confidence 5543 22 124555555 5543444433
No 433
>CHL00175 minD septum-site determining protein; Validated
Probab=89.65 E-value=2.6 Score=36.58 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=26.5
Q ss_pred CEEEEEcC-CchHHHHHH--HHHHcCCCCcEEEEEeCCchh
Q 042616 42 QLIVMACS-SIAVSRTLA--LVAAARQTGGRVVCILSGVIG 79 (220)
Q Consensus 42 ~~ILEIGt-g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~ 79 (220)
+.|.-+++ ||+|-+|+. ||.++...+-+|.-||.| +.
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D-~~ 55 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD-IG 55 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC-CC
Confidence 44444443 678988865 777777656689999999 75
No 434
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=89.62 E-value=5.8 Score=34.69 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=54.0
Q ss_pred CCEEEEE--cCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCccEE
Q 042616 41 AQLIVMA--CSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGADFV 116 (220)
Q Consensus 41 a~~ILEI--Gtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D~V 116 (220)
+..+|-+ |+|++|..++.+|+++ +.+|++++.+ ++..+.+++. |...-+.....+..+.+... ...+|++
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~---G~~vi~~~~~-~~~~~~~~~~--g~~~~i~~~~~~~~~~v~~~~~~~~~d~v 216 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD---GIKVINIVRR-KEQVDLLKKI--GAEYVLNSSDPDFLEDLKELIAKLNATIF 216 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHc--CCcEEEECCCccHHHHHHHHhCCCCCcEE
Confidence 4445443 6677888888888875 6789999999 8888888763 32111222222333323222 2468977
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
| |+-- ... ....... +++ ||.++..
T Consensus 217 i-d~~g--~~~---~~~~~~~--l~~-~G~~v~~ 241 (324)
T cd08291 217 F-DAVG--GGL---TGQILLA--MPY-GSTLYVY 241 (324)
T ss_pred E-ECCC--cHH---HHHHHHh--hCC-CCEEEEE
Confidence 7 6543 221 2333444 544 6665554
No 435
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.59 E-value=4.6 Score=33.34 Aligned_cols=77 Identities=10% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---CC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---YR 111 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~~ 111 (220)
.+.||-+|+ +|..+..++..+...+.+|+.+..+ ++..+...+.+... .+++++.+|..+. +... .+
T Consensus 6 ~~~ilItGa--tg~iG~~la~~l~~~g~~V~~~~r~-~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG--SKGIGFAIAEALLAEGYKVAITARD-QKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC--CCcHHHHHHHHHHHCCCEEEEeeCC-HHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 477888884 4666666666665557799999999 77766555555422 4688888775432 1111 24
Q ss_pred CccEEEEcCC
Q 042616 112 GADFVLIDCN 121 (220)
Q Consensus 112 ~~D~VfiD~~ 121 (220)
++|.||.-+.
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 7899986553
No 436
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.52 E-value=3.5 Score=36.96 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=55.2
Q ss_pred EEEEEcCCchHHH-HHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc--ccCCc--EEEEEcchhhhhhhcCCCccEE
Q 042616 43 LIVMACSSIAVSR-TLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG--RYANC--IEFVKGDAQKLLMGDYRGADFV 116 (220)
Q Consensus 43 ~ILEIGtg~~G~s-Tl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~--g~~~~--Ve~v~gda~~~L~~~~~~~D~V 116 (220)
+|+-+|+|+.|.. +..|+++ + +.+++... ++.++.-+++ +. ....+ ......+..+ ...++|+|
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~----g-~~V~~~~R-~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~----~~~~~Dlv 71 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA----G-HDVTLLVR-SRRLEALKKKGLRIEDEGGNFTTPVVAATDAE----ALGPADLV 71 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC----C-CeEEEEec-HHHHHHHHhCCeEEecCCCccccccccccChh----hcCCCCEE
Confidence 6888998766643 3334443 4 55665555 4556555553 11 11110 1111111111 13579999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCE-EEEEecCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAG-VIVGYNAL 153 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Gg-viv~dNv~ 153 (220)
||.... -+..+.++.+.+. +.+ .+ +++..|=+
T Consensus 72 iv~vKa--~q~~~al~~l~~~--~~~-~t~vl~lqNG~ 104 (307)
T COG1893 72 IVTVKA--YQLEEALPSLAPL--LGP-NTVVLFLQNGL 104 (307)
T ss_pred EEEecc--ccHHHHHHHhhhc--CCC-CcEEEEEeCCC
Confidence 999988 7889999999998 765 55 44454444
No 437
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=89.52 E-value=5.2 Score=37.19 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=27.2
Q ss_pred EEEEEcC--CchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 43 LIVMACS--SIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 43 ~ILEIGt--g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
.|+-|.. ||+|-+|+. ||.++...|-+|..||.| |+.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD-pQ~ 162 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD-PQA 162 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC-CCC
Confidence 4555543 568888754 777776667899999999 874
No 438
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.51 E-value=5.3 Score=36.89 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=52.1
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVL 117 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~Vf 117 (220)
.++|+-+|+| ..+..+++.+...+-.|+.||.| ++..+..++.. ..+.++.||+.+ .|... ...+|.|+
T Consensus 231 ~~~iiIiG~G---~~g~~l~~~L~~~~~~v~vid~~-~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGGG---NIGYYLAKLLEKEGYSVKLIERD-PERAEELAEEL----PNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECCC---HHHHHHHHHHHhCCCeEEEEECC-HHHHHHHHHHC----CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 5889988865 44445666665557799999999 88887766653 346789999843 34332 36789998
Q ss_pred EcCCC
Q 042616 118 IDCNI 122 (220)
Q Consensus 118 iD~~k 122 (220)
+-.+.
T Consensus 303 ~~~~~ 307 (453)
T PRK09496 303 ALTND 307 (453)
T ss_pred ECCCC
Confidence 86654
No 439
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=89.41 E-value=10 Score=33.33 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=56.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcE-EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCCcc
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGR-VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRGAD 114 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~gr-V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~~D 114 (220)
..+.+.||-.|+|++|..++.+|.+. +.+ |+.++.+ ++..+.+++. +....+.....+..+-+..+ ...+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~---G~~~v~~~~~~-~~~~~~~~~~--g~~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS---GAYPVIVSDPN-EYRLELAKKM--GATYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCC-HHHHHHHHHh--CCcEEEcccccCHHHHHHHhcCCCCCC
Confidence 34567777678777898888888875 555 8888888 7777766553 22111222233443333222 25688
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
++|--... ...++.+.+. |++ +|.++.
T Consensus 233 ~vld~~g~-----~~~~~~~~~~--l~~-~g~~v~ 259 (340)
T TIGR00692 233 VFLEMSGA-----PKALEQGLQA--VTP-GGRVSL 259 (340)
T ss_pred EEEECCCC-----HHHHHHHHHh--hcC-CCEEEE
Confidence 88643232 1335555665 655 555544
No 440
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=89.35 E-value=8.5 Score=35.65 Aligned_cols=127 Identities=17% Similarity=0.074 Sum_probs=65.6
Q ss_pred CCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc
Q 042616 21 KRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 21 ~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
.+...|...+|-..++...++...+-.++| +....+.+...+.+ +.+|++..+.=.......+..+....-++..+..
T Consensus 55 ~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG-~~Ai~~~l~all~p-GD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 55 TRSGNPTRDLLGEALAELEGGAGGVITATG-MGAINLVLNALLQP-GDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred cCCCChHHHHHHHHHHHHhCCCceEEEcCH-HHHHHHHHHHHhCC-CCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 356777777888888887776655655643 33333323222344 7777775444122122223333321112333322
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.....+||+..+... .+..++.+.+. ..|.+||+||+...
T Consensus 133 ~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~------~~gi~vIvD~a~a~ 186 (405)
T PRK08776 133 TDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAH------KVGALTVVDNTFLS 186 (405)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHH------HcCCEEEEECCCcc
Confidence 444433332345789998765411 23333333333 24899999999854
No 441
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.31 E-value=3.9 Score=37.37 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch-------------------hHHHHHHHHhcccC--CcEEEE
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI-------------------GDIDASKKSLGRYA--NCIEFV 98 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~-------------------~~~~~Ar~~l~g~~--~~Ve~v 98 (220)
+..+||-+|+|+.|...+.....+. -|+++-+|.| . .+++.|++.++.+. -+|+.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~G--vg~i~lvD~D-~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAG--VGHITIIDDD-TVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC-EEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 4477999999988887765333332 3899999988 4 45566667665222 235554
Q ss_pred Ecchhh-hhhhcCCCccEEEEcCCC
Q 042616 99 KGDAQK-LLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 99 ~gda~~-~L~~~~~~~D~VfiD~~k 122 (220)
...... -+..+...+|+|+.-.+.
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d~ 128 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSDN 128 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCCC
Confidence 443321 112234679977654444
No 442
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.14 E-value=1.2 Score=41.44 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 28 VGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 28 ~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
..++++.++.-.+.+.++|+|+| .||.+-.|+.. .+-.|++||.+ +...+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG-~G~LSr~lSl~---y~lsV~aIegs-q~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAG-QGHLSRFLSLG---YGLSVKAIEGS-QRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCC-chHHHHHHhhc---cCceEEEeccc-hHHHHHHHH
Confidence 47889999999999999999996 99999988875 36699999999 877776664
No 443
>PLN02494 adenosylhomocysteinase
Probab=89.10 E-value=5.4 Score=38.10 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
...+.|+-+|+|.+|-..+..+.+. |.+|+.+|.+ +.....|... |+ +++ +..+.+ ...|++|.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~---Ga~VIV~e~d-p~r~~eA~~~--G~----~vv--~leEal----~~ADVVI~ 315 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA---GARVIVTEID-PICALQALME--GY----QVL--TLEDVV----SEADIFVT 315 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-chhhHHHHhc--CC----eec--cHHHHH----hhCCEEEE
Confidence 3469999999988888777777654 6799999999 7765444332 32 111 334444 35799987
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
.... ... +.+..... ++ +|++|+.-
T Consensus 316 tTGt--~~v--I~~e~L~~--MK-~GAiLiNv 340 (477)
T PLN02494 316 TTGN--KDI--IMVDHMRK--MK-NNAIVCNI 340 (477)
T ss_pred CCCC--ccc--hHHHHHhc--CC-CCCEEEEc
Confidence 4433 221 22444444 54 48877754
No 444
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=89.08 E-value=3.8 Score=29.37 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=50.9
Q ss_pred EEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEE
Q 042616 70 VVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIV 148 (220)
Q Consensus 70 V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv 148 (220)
|.-||.+ +...+..++.++...-..-....+..+.+..+ ...+|+|++|......+..++++.+... - +...+|+
T Consensus 1 Ilivd~~-~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~--~-~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDD-PEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQI--N-PSIPIIV 76 (112)
T ss_dssp EEEEESS-HHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHH--T-TTSEEEE
T ss_pred cEEEECC-HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccc--c-ccccEEE
Confidence 4567888 88888888888722111223556666665443 3679999999876446778899999887 2 4445544
Q ss_pred E
Q 042616 149 G 149 (220)
Q Consensus 149 ~ 149 (220)
.
T Consensus 77 ~ 77 (112)
T PF00072_consen 77 V 77 (112)
T ss_dssp E
T ss_pred e
Confidence 4
No 445
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.00 E-value=3 Score=34.79 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~ 110 (220)
..++||-.|. +|..+..++..+...+.+|+.++.+ ++..+.....++....+++++..|..+. +... .
T Consensus 3 ~~~~vlItG~--sg~iG~~la~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTGA--ASGIGLEIALALAKEGAKVVIADLN-DEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEECC--CchHHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3478888883 5777788888776657899999999 8777665555543335688888775431 1111 3
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.|+.-+.
T Consensus 80 ~~~d~vi~~a~ 90 (258)
T PRK12429 80 GGVDILVNNAG 90 (258)
T ss_pred CCCCEEEECCC
Confidence 57899987654
No 446
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=88.87 E-value=1.9 Score=36.89 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=28.0
Q ss_pred EEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhH
Q 042616 43 LIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGD 80 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~ 80 (220)
.|.-+|-||+|-+|+. ||.++...|-+|.-||.| |+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D-pq~ 41 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD-PKA 41 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC-CCC
Confidence 4544566779988865 778887757789999999 874
No 447
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.81 E-value=8 Score=31.87 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
+.++||-+|+ +|..+..+++.+.+.+.+|+.+..+ ++..+...+.+... .+++++..|..+. +.. ..
T Consensus 4 ~~~~vlItGa--~g~iG~~~a~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGV--SEGLGYAVAYFALKEGAQVCINSRN-ENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4578998884 4666666666665557899999999 77665554433322 3578887775421 111 12
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+.+|.++..+..
T Consensus 80 ~~id~ii~~ag~ 91 (238)
T PRK05786 80 NAIDGLVVTVGG 91 (238)
T ss_pred CCCCEEEEcCCC
Confidence 467988877653
No 448
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.79 E-value=2.2 Score=35.58 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=51.4
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh---------hhhcCCC
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL---------LMGDYRG 112 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~---------L~~~~~~ 112 (220)
+.+|-.|+ +|..+..|+..+.+.+.+|+.++.+ ++..+.....++....+++++.+|..+. +.....+
T Consensus 2 ~~vlItGa--~g~lG~~l~~~l~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGA--ASGIGLAIALALAAAGANVVVNDLG-EAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCC--cchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 46787773 5777777777766557899999999 7776666555543335688888876432 1111356
Q ss_pred ccEEEEcCC
Q 042616 113 ADFVLIDCN 121 (220)
Q Consensus 113 ~D~VfiD~~ 121 (220)
+|.||..+.
T Consensus 79 ~d~vi~~a~ 87 (255)
T TIGR01963 79 LDILVNNAG 87 (255)
T ss_pred CCEEEECCC
Confidence 899986653
No 449
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.73 E-value=3.1 Score=34.56 Aligned_cols=79 Identities=10% Similarity=0.138 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
+.+.+|-+|+ +|..+..|++.+.+.+.+|+.+..+ ++..+.....++....+++++..|..+. +.. ..
T Consensus 6 ~~~~vlVtG~--sg~iG~~l~~~L~~~G~~Vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 6 QGKNALITGA--GRGIGRAVAIALAKEGVNVGLLART-EENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCCEEEEEcC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4577888884 5777777777765558899999999 7766555444443335688888875321 111 12
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.||.-+.
T Consensus 83 ~~id~vi~~ag 93 (239)
T PRK07666 83 GSIDILINNAG 93 (239)
T ss_pred CCccEEEEcCc
Confidence 57899987654
No 450
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.71 E-value=10 Score=32.94 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=54.6
Q ss_pred hCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEE
Q 042616 38 GNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 38 ~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vf 117 (220)
..+.+.||-.|+|++|..++.+|++. +.+|+.+..+ ++..+.+++ + +. +. ++...-.+......+.+|.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~-~~--~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM---GFETVAITRS-PDKRELARK-L-GA-DE--VVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-HHHHHHHHH-h-CC-cE--EeccCCcchHHhccCCCCEEE
Confidence 34567888889877888888888764 5689999999 777777644 2 21 11 111111111111124699876
Q ss_pred EcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 118 IDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 118 iD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
|+-. .....+.+.+. +++.|.++.+
T Consensus 231 -~~~~----~~~~~~~~~~~--l~~~G~~i~~ 255 (330)
T cd08245 231 -VTVV----SGAAAEAALGG--LRRGGRIVLV 255 (330)
T ss_pred -ECCC----cHHHHHHHHHh--cccCCEEEEE
Confidence 6532 12345555666 6554444444
No 451
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=88.67 E-value=3.6 Score=36.76 Aligned_cols=87 Identities=11% Similarity=-0.019 Sum_probs=52.3
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhc--ccCCcEEEEEcch
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI------------------GDIDASKKSLG--RYANCIEFVKGDA 102 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~--g~~~~Ve~v~gda 102 (220)
+||-+|+|+.|...+.....+. -|+++-+|.|.- .+++.|.+.++ .-.-+|+.+.++.
T Consensus 1 kVlVVGaGGlG~eilknLal~G--vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG--FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKI 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 4788999989988876443332 388988887721 13345555554 2223466677666
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHH
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRA 133 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~ 133 (220)
.+.-......||+|+.-.+. -.-..++..
T Consensus 79 ~~~~~~f~~~fdvVi~alDn--~~aR~~in~ 107 (291)
T cd01488 79 QDKDEEFYRQFNIIICGLDS--IEARRWING 107 (291)
T ss_pred CchhHHHhcCCCEEEECCCC--HHHHHHHHH
Confidence 55433445789998865444 333344444
No 452
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.65 E-value=2.3 Score=35.29 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
..++||-+|+ +|..+.+|+..+.+.+.+|+.+..+ ++..+.....+.....+++++.+|..+. +... .
T Consensus 5 ~~~~ilItGa--sg~iG~~l~~~l~~~g~~V~~~~r~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA--ARGIGRAIAVRLAADGAEVIVVDIC-GDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC--CCcHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577888883 5677777777666557799999999 7766655555542224588888876432 1111 2
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|.||.-+..
T Consensus 82 ~~~d~vi~~ag~ 93 (251)
T PRK12826 82 GRLDILVANAGI 93 (251)
T ss_pred CCCCEEEECCCC
Confidence 478998876633
No 453
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.64 E-value=1.5 Score=38.30 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=56.7
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------c-cC--------CcEEEEEcchh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------R-YA--------NCIEFVKGDAQ 103 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g-~~--------~~Ve~v~gda~ 103 (220)
++|--||+|..|.. +|..+...+-+|+.+|++ ++.++.+++.++ + +. .++.+ ..|..
T Consensus 4 ~kI~VIG~G~mG~~---ia~~la~~g~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~ 78 (282)
T PRK05808 4 QKIGVIGAGTMGNG---IAQVCAVAGYDVVMVDIS-DAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD 78 (282)
T ss_pred cEEEEEccCHHHHH---HHHHHHHCCCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH
Confidence 46777887655543 333333335689999999 998876654332 1 10 12332 22322
Q ss_pred hhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 104 KLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
+ + ...|+||+-.+.+...-.++++.+.+. +. ++.+|+. |+.
T Consensus 79 ~-~----~~aDlVi~av~e~~~~k~~~~~~l~~~--~~-~~~il~s-~ts 119 (282)
T PRK05808 79 D-L----KDADLVIEAATENMDLKKKIFAQLDEI--AK-PEAILAT-NTS 119 (282)
T ss_pred H-h----ccCCeeeecccccHHHHHHHHHHHHhh--CC-CCcEEEE-CCC
Confidence 2 2 467999998765112225889999887 64 4777644 443
No 454
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.63 E-value=13 Score=33.46 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=62.2
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhc--ccCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLG--RYANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~--g~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
..+|.-||+|.+|++...++. .......++=+|++ ++.++ .+...-. .+.....+.. +|..+ + ...|+|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~-~~~~~~el~LiD~~-~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~----~~adiv 75 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISIL-AKGLADELVLVDVV-EDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T----ANSKVV 75 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCC-ccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h----CCCCEE
Confidence 357888999999987666543 44446789999999 55443 3333322 2222235554 66655 3 467999
Q ss_pred EEcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
++-+...+ .-+.++.+.+.+. .|++-+|++-|-
T Consensus 76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~---~p~~~vivvsNP 122 (312)
T cd05293 76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY---SPNAILLVVSNP 122 (312)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEccCh
Confidence 99554311 1145566667776 376777777664
No 455
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.63 E-value=6.7 Score=34.85 Aligned_cols=95 Identities=7% Similarity=-0.034 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
..++++-||.|.+|...+..+.++ +.+|+.++.+ ++..+.++.. +. +++. ..+ +++....+|+||.-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~-~~~~~~~~~~--G~----~~~~--~~~-l~~~l~~aDiVI~t 217 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL---GANVTVGARK-SAHLARITEM--GL----SPFH--LSE-LAEEVGKIDIIFNT 217 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECC-HHHHHHHHHc--CC----eeec--HHH-HHHHhCCCCEEEEC
Confidence 478999999987777766666553 6799999999 7766555432 22 1211 111 22323579999986
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
.+. .. .-+..... ++| |+ +++|-+..+|
T Consensus 218 ~p~--~~---i~~~~l~~--~~~-g~-vIIDla~~pg 245 (296)
T PRK08306 218 IPA--LV---LTKEVLSK--MPP-EA-LIIDLASKPG 245 (296)
T ss_pred CCh--hh---hhHHHHHc--CCC-Cc-EEEEEccCCC
Confidence 543 21 22334444 443 55 4555444444
No 456
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=88.63 E-value=9 Score=34.97 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch-hHHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI-GDIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~-~~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+...|...+|-..++...+++.++-..+| +....+.|...+.+ +.+|++-... - .........+....-.+.++..
T Consensus 50 r~~~p~~~~le~~la~l~g~~~~~~~~sG-~~Ai~~al~al~~~-Gd~Vl~~~~~-~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGAERAVATATG-MSAIQAALMTLLQA-GDHVVASRSL-FGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred cCCCchHHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEecCC-cchHHHHHHHHHHHhCCEEEEECC
Confidence 45678888898999988887777655432 33333333222344 7788775433 2 1222222233311123555433
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.....+|++..+... .+..++.+.+. ..|..+++||+..
T Consensus 127 ~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~------~~gi~livD~a~~ 179 (380)
T TIGR01325 127 TDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAH------AIGALLVVDNVFA 179 (380)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHH------HcCCEEEEECCCc
Confidence 333433222345789998766411 12233333333 2489999999974
No 457
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.62 E-value=6.4 Score=37.05 Aligned_cols=115 Identities=13% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
..++|+-+|+|.+|...+..+++. +.+|+.+|.+ +.+...|... |. ++. +..+.+ ...|+||.-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d~d-p~ra~~A~~~--G~----~v~--~l~eal----~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL---GARVIVTEVD-PICALQAAMD--GF----RVM--TMEEAA----ELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEcCC-chhhHHHHhc--CC----Eec--CHHHHH----hCCCEEEEC
Confidence 678999999988887777666654 6799999999 8765444331 32 211 334443 368988654
Q ss_pred CCCCCccHHHHHH-HHHhhcCCCCCCEEEEEecCCCCC-----------Ccc----ceEEEeeecCCcEEEEEEe
Q 042616 120 CNIDIDGHKNVFR-AAKESVMHGSGAGVIVGYNALPKG-----------SWR----GYKTHFLPIGEGLLVTRIG 178 (220)
Q Consensus 120 ~~k~~~~y~~~l~-~l~~~~~L~~~Ggviv~dNv~~~g-----------~~~----~~~s~~lPig~Gl~v~~~~ 178 (220)
... .+.++ ..... ++ +|++++.-..+... .+. .+....+|-|..+.|.--+
T Consensus 275 TG~-----~~vI~~~~~~~--mK-~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~G 341 (425)
T PRK05476 275 TGN-----KDVITAEHMEA--MK-DGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEG 341 (425)
T ss_pred CCC-----HHHHHHHHHhc--CC-CCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCC
Confidence 332 23444 34443 44 47777654332211 111 4555667777766555443
No 458
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.59 E-value=2.3 Score=35.48 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=47.8
Q ss_pred CCEEEEEcCCchHHHHHH--HHHHcCCCCcE--EEEEeCCchhHHHHHHHHhcccCCcEEEEEc----chhh----hhhh
Q 042616 41 AQLIVMACSSIAVSRTLA--LVAAARQTGGR--VVCILSGVIGDIDASKKSLGRYANCIEFVKG----DAQK----LLMG 108 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~--LA~A~~~~~gr--V~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g----da~~----~L~~ 108 (220)
|+.|+=+|..|+|-+|.. ||..+...+.+ ++|.|.......+..+.+.+-+ +|.+... |..+ .+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l--~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL--GVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH--TEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh--ccccchhhcchhhHHHHHHHHHH
Confidence 456777886558887764 55554433444 5888887566777777777633 2555442 2323 2322
Q ss_pred c-CCCccEEEEcCCC
Q 042616 109 D-YRGADFVLIDCNI 122 (220)
Q Consensus 109 ~-~~~~D~VfiD~~k 122 (220)
. .+.+|+||||..-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 2 2579999999876
No 459
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.59 E-value=3 Score=39.15 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=55.2
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCN 121 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~ 121 (220)
+|.-|| | +|..+.+||.++...+-+|+.++.+ ++.. +.+++ + + ++ ...+..+.+ ...|+||+-.+
T Consensus 2 kI~IIG-G-~G~mG~slA~~L~~~G~~V~v~~r~-~~~~~~~a~~-~-g----v~-~~~~~~e~~----~~aDvVIlavp 67 (437)
T PRK08655 2 KISIIG-G-TGGLGKWFARFLKEKGFEVIVTGRD-PKKGKEVAKE-L-G----VE-YANDNIDAA----KDADIVIISVP 67 (437)
T ss_pred EEEEEe-c-CCHHHHHHHHHHHHCCCEEEEEECC-hHHHHHHHHH-c-C----Ce-eccCHHHHh----ccCCEEEEecC
Confidence 577787 2 3455556666665546689999999 7664 33322 1 2 22 223333433 45799999888
Q ss_pred CCCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 122 IDIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 122 k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
. ....++++.+.+. +.+ |. +|+|-.
T Consensus 68 ~--~~~~~vl~~l~~~--l~~-~~-iViDvs 92 (437)
T PRK08655 68 I--NVTEDVIKEVAPH--VKE-GS-LLMDVT 92 (437)
T ss_pred H--HHHHHHHHHHHhh--CCC-CC-EEEEcc
Confidence 7 6677888888887 643 55 555544
No 460
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.56 E-value=2.2 Score=37.33 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=54.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-----ccC-------------CcEEEEEcchh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-----RYA-------------NCIEFVKGDAQ 103 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-----g~~-------------~~Ve~v~gda~ 103 (220)
++|.-||+|..|.. +|..+...+-+|+.+|.+ ++.++.+.+.+. +.. .++++ ..+..
T Consensus 2 ~~V~VIG~G~mG~~---iA~~la~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGVMGRG---IAYVFAVSGFQTTLVDIK-QEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLK 76 (288)
T ss_pred cEEEEECccHHHHH---HHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHH
Confidence 46888887544443 343333336689999999 999888776542 110 11222 22333
Q ss_pred hhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.+ ...|+||.--+.+...-..++..+.+. +. ++.+|+.
T Consensus 77 ~~~----~~aD~Vi~avpe~~~~k~~~~~~l~~~--~~-~~~il~~ 115 (288)
T PRK09260 77 AAV----ADADLVIEAVPEKLELKKAVFETADAH--AP-AECYIAT 115 (288)
T ss_pred Hhh----cCCCEEEEeccCCHHHHHHHHHHHHhh--CC-CCcEEEE
Confidence 333 457999976655111124667777776 54 4665544
No 461
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.55 E-value=6.2 Score=35.10 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchh---hhhhhc--CCCc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQ---KLLMGD--YRGA 113 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~---~~L~~~--~~~~ 113 (220)
+.++||-.|+|++|..++.+|+++ +. +|+.++.+ ++..+.+++ + |....+.....+.. ..+..+ ...+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~---G~~~v~~~~~~-~~~~~~~~~-~-g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA---GARRVIVIDGS-PERLELARE-F-GADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC-HHHHHHHHH-c-CCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 567888889888999999999875 44 89999998 887777754 2 32111211111111 112122 2469
Q ss_pred cEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEec
Q 042616 114 DFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYN 151 (220)
Q Consensus 114 D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dN 151 (220)
|++| |+-- . ...++...+. +++ +|.++.-.
T Consensus 251 d~vi-d~~g--~--~~~~~~~~~~--l~~-~G~~v~~g 280 (361)
T cd08231 251 DVVI-EASG--H--PAAVPEGLEL--LRR-GGTYVLVG 280 (361)
T ss_pred cEEE-ECCC--C--hHHHHHHHHH--hcc-CCEEEEEc
Confidence 9776 4432 1 2345566666 655 66666543
No 462
>PRK06767 methionine gamma-lyase; Provisional
Probab=88.53 E-value=8.4 Score=35.23 Aligned_cols=128 Identities=9% Similarity=0.062 Sum_probs=66.3
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEc-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKG- 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g- 100 (220)
+.-.|...+|-..+++..+.+..+-+++| +....+.+...+.+ +.+|++-++.-.......+.......-.+.++..
T Consensus 57 r~~~pt~~~Le~~lA~l~G~~~al~~~sG-~~Ai~~~l~al~~~-Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~ 134 (386)
T PRK06767 57 RLGNPTVKLFEERMAVLEGGEEALAFGSG-MAAISATLIGFLKA-GDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDME 134 (386)
T ss_pred CCCCcchHHHHHHHHHHhCCCcEEEECCH-HHHHHHHHHHHhCC-CCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCC
Confidence 44568888888888888887777767754 33333333222343 7788876653112222222222211112333322
Q ss_pred chhhhhhhcCCCccEEEEcCCCCC-ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 DAQKLLMGDYRGADFVLIDCNIDI-DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 da~~~L~~~~~~~D~VfiD~~k~~-~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.+..++|++..+... ....+ ++.+.+. .+..|..+++||++.
T Consensus 135 d~~~l~~~i~~~tklV~lesp~NptG~v~d-l~~I~~l--a~~~g~~vivD~a~a 186 (386)
T PRK06767 135 TEADIENKIRPNTKLIFVETPINPTMKLID-LKQVIRV--AKRNGLLVIVDNTFC 186 (386)
T ss_pred CHHHHHHhhCcCceEEEEeCCCCCCceecC-HHHHHHH--HHHcCCEEEEECCCc
Confidence 344433332345789998876511 11111 2333332 223489999999974
No 463
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=88.53 E-value=10 Score=32.77 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=53.8
Q ss_pred HhhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc--CCC
Q 042616 36 AAGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD--YRG 112 (220)
Q Consensus 36 a~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~--~~~ 112 (220)
+...+.+.||-.|+ |++|..++.+|++. |.+++.+..+ ++..+.+++ + +...-+.....+..+.+..+ ..+
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~---G~~v~~~~~~-~~~~~~~~~-~-g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAAR---GINVINLVRR-DAGVAELRA-L-GIGPVVSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHC---CCeEEEEecC-HHHHHHHHh-c-CCCEEEcCCCchHHHHHHHHhCCCC
Confidence 34456678887764 56888888888875 5678777666 555555554 2 33111111111222222222 246
Q ss_pred ccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 113 ADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 113 ~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+|++| |+-- .. .+..+.+. |++ +|.++.
T Consensus 209 ~d~v~-d~~g--~~---~~~~~~~~--l~~-~g~~v~ 236 (324)
T cd08292 209 ISVAL-DSVG--GK---LAGELLSL--LGE-GGTLVS 236 (324)
T ss_pred CcEEE-ECCC--Ch---hHHHHHHh--hcC-CcEEEE
Confidence 99887 6644 22 23455555 655 555443
No 464
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=88.51 E-value=7.3 Score=35.90 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhH-HHHHHHHhcccCCcEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGD-IDASKKSLGRYANCIEFV 98 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~-~~~Ar~~l~g~~~~Ve~v 98 (220)
+.-.|...+|-..+|+..+.+..+-+++ |.+++. +...+.+ |.+|++.++. -.. ....+..+....-.+.++
T Consensus 61 r~~~p~~~~Le~~lA~l~G~~~~~~~~s---G~~Ai~~~l~~~l~~-Gd~Vl~~~~~-y~~~~~~~~~~~~~~G~~v~~v 135 (398)
T PRK07504 61 RYSNPTVDMFEKRMCALEGAEDARATAS---GMAAVTAAILCQVKA-GDHVVAARAL-FGSCRYVVETLLPRYGIESTLV 135 (398)
T ss_pred cCCCchHHHHHHHHHHHhCCCeeeEecC---HHHHHHHHHHHHhCC-CCEEEEcCCc-hhHHHHHHHHHHhhcCeEEEEE
Confidence 4457888899999999888776664543 444443 3223444 7888887654 222 222222222111123443
Q ss_pred E-cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 99 K-GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 99 ~-gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
. -|..++...+.+..++|++..+... .+..++.+.+.+ .|.++|+||+...
T Consensus 136 d~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~------~gi~lvvD~a~a~ 191 (398)
T PRK07504 136 DGLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQ------AGAKLVVDNVFAT 191 (398)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHH------cCCEEEEECCccc
Confidence 3 2334433333356789998776521 123333333332 4899999999753
No 465
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=88.48 E-value=5.9 Score=34.99 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCc-EEEEEeCCchhHHHHHHHHhcccCCcEEEEEc---chhhhhhhc-CCCcc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGG-RVVCILSGVIGDIDASKKSLGRYANCIEFVKG---DAQKLLMGD-YRGAD 114 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~g-rV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~g---da~~~L~~~-~~~~D 114 (220)
+.+.||-.|+|++|..++.+|++. +. +|++++.+ ++..+.+++ + |. + .++.. +..+.+... .+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~---G~~~v~~~~~~-~~~~~~~~~-~-g~-~--~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKAL---GPANIIVVDID-EAKLEAAKA-A-GA-D--VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc---CCCeEEEEeCC-HHHHHHHHH-h-CC-c--EEecCCCccHHHHHHHHhCCCCc
Confidence 467888888888898888888875 44 78999998 888877754 3 22 1 22221 222222222 23689
Q ss_pred EEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 115 FVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 115 ~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
++| |+.- . ...++.+.+. |.+ +|.++.-
T Consensus 246 ~vi-d~~g--~--~~~~~~~~~~--l~~-~g~~v~~ 273 (350)
T cd08240 246 AVI-DFVN--N--SATASLAFDI--LAK-GGKLVLV 273 (350)
T ss_pred EEE-ECCC--C--HHHHHHHHHH--hhc-CCeEEEE
Confidence 887 6543 1 2345666666 655 5665543
No 466
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=88.44 E-value=0.97 Score=36.18 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=39.9
Q ss_pred CchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcC-CCccEEEEcCCC
Q 042616 50 SIAVSRTLA--LVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDY-RGADFVLIDCNI 122 (220)
Q Consensus 50 g~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~-~~~D~VfiD~~k 122 (220)
||+|-||+. ||.++.+.|-+|.-||.| ++.....+. +.+. . ......+.+..+. ..||+|++|++.
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D-~q~~~~~~~-~~~~--~---~~~~l~~~~~~~~~~~yD~VIiD~pp 77 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDAD-IYGPSIPKM-WRGP--M---KMGAIKQFLTDVDWGELDYLVIDMPP 77 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCC-CCCCCchHH-HhCc--c---hHHHHHHHHHHhhcCCCCEEEEeCCC
Confidence 457777754 777776667899999999 776432221 1110 0 1111223333322 689999999998
No 467
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.38 E-value=21 Score=33.40 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHH--HHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEE
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALV--AAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVK 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA--~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~ 99 (220)
+.-.|.+.+|=..+|...+++..+-.. +|..++.++ ..+.+ +.+|++....=..........+....-.+.++.
T Consensus 60 R~~~p~~~~le~~lA~l~g~~~av~~s---SGt~Al~~al~~ll~~-Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 135 (433)
T PRK08134 60 RISNPTVAVLEERVAALEGGVGAIATA---SGQAALHLAIATLMGA-GSHIVASSALYGGSHNLLHYTLRRFGIETTFVK 135 (433)
T ss_pred cCcChHHHHHHHHHHHHhCCCcEEEeC---CHHHHHHHHHHHHhCC-CCEEEEeCCccHHHHHHHHHHHhhCCeEEEEEC
Confidence 456788999999999988887765443 455555432 22444 788988877512233333333332212345543
Q ss_pred c-chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 100 G-DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 100 g-da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
- |..++-..+..+-.+|++-..... .+..++.+.+.+ .|..+++||+..
T Consensus 136 ~~d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~------~gi~livD~t~a 189 (433)
T PRK08134 136 PGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHE------AGVPLLVDSTFT 189 (433)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHH------cCCEEEEECCCc
Confidence 2 344433333456788888765411 233334444433 488999999974
No 468
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=88.38 E-value=4.9 Score=35.09 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=57.7
Q ss_pred hhCCCCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccE
Q 042616 37 AGNNAQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADF 115 (220)
Q Consensus 37 ~~~~a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~ 115 (220)
...+...||-.|+ |.+|..++.+|.+. +.+++++..+ ++..+.+++..... +... +..+.+..+ +.+|+
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~---g~~vi~~~~~-~~~~~~~~~~~~~~---~~~~--~~~~~v~~~-~~~d~ 228 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKAL---GAKVIAVTSS-ESKAKIVSKYADYV---IVGS--KFSEEVKKI-GGADI 228 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHh---cCch--hHHHHHHhc-CCCcE
Confidence 3345678888887 67899988888875 6789999999 88888876641111 1111 222323333 46898
Q ss_pred EEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 116 VLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 116 VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+| |+-. . ..++.+.+. |++ +|.++.
T Consensus 229 ~l-d~~g--~---~~~~~~~~~--l~~-~G~~v~ 253 (334)
T PRK13771 229 VI-ETVG--T---PTLEESLRS--LNM-GGKIIQ 253 (334)
T ss_pred EE-EcCC--h---HHHHHHHHH--Hhc-CCEEEE
Confidence 87 6654 2 235566666 655 555443
No 469
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.37 E-value=22 Score=33.37 Aligned_cols=125 Identities=16% Similarity=0.106 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhcccCCcEEEEE-
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLGRYANCIEFVK- 99 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~g~~~~Ve~v~- 99 (220)
+...|.+.+|=..++...+++..+-..+| +....+.+...+++ |.+|++.... -... ....+.+....-.+.++.
T Consensus 65 r~~~pt~~~le~~la~l~g~~~~v~fsSG-~~Ai~~al~~ll~~-Gd~VI~~~~~-y~~t~~~~~~~l~~~Gi~v~~vd~ 141 (437)
T PRK05613 65 RLTNPTVEALENRIASLEGGVHAVAFASG-QAAETAAILNLAGA-GDHIVTSPRL-YGGTETLFLVTLNRLGIEVTFVEN 141 (437)
T ss_pred CccChHHHHHHHHHHHHhCCCeEEEeCCH-HHHHHHHHHHhcCC-CCEEEECCCc-cHHHHHHHHHHHHhcCeEEEEECC
Confidence 56778888888888888888777766654 44433334333444 8889887544 2222 223333332212355553
Q ss_pred -cchhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 100 -GDAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 100 -gda~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
.|..++...+.....+|++...... .+...+-+.+. ..|.++++||+...
T Consensus 142 ~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~------~~gi~livD~t~a~ 196 (437)
T PRK05613 142 PDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAH------RNQVPLIVDNTIAT 196 (437)
T ss_pred CCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHH------HcCCeEEEECCCcc
Confidence 2344443333455788887655411 13333333333 34899999999754
No 470
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=88.35 E-value=9.8 Score=32.90 Aligned_cols=94 Identities=12% Similarity=-0.048 Sum_probs=55.1
Q ss_pred CCEEEEEcC-CchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhc-CCCccEEEE
Q 042616 41 AQLIVMACS-SIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGD-YRGADFVLI 118 (220)
Q Consensus 41 a~~ILEIGt-g~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~-~~~~D~Vfi 118 (220)
.++||-+|+ |++|..++.+|++. +.+|+++..+ ++..+.+++ + |. +.+--......+.+..+ ...+|.+|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~---g~~v~~~~~~-~~~~~~~~~-~-g~-~~v~~~~~~~~~~~~~~~~~~~d~vl- 218 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKL---GYEVVASTGK-ADAADYLKK-L-GA-KEVIPREELQEESIKPLEKQRWAGAV- 218 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC---CCeEEEEecC-HHHHHHHHH-c-CC-CEEEcchhHHHHHHHhhccCCcCEEE-
Confidence 468888886 67888877788765 5689999999 887777754 2 22 11111111111222121 24689765
Q ss_pred cCCCCCccHHHHHHHHHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRAAKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~d 150 (220)
|+-. . ..++..... +++ +|.++.-
T Consensus 219 d~~g--~---~~~~~~~~~--l~~-~G~~i~~ 242 (326)
T cd08289 219 DPVG--G---KTLAYLLST--LQY-GGSVAVS 242 (326)
T ss_pred ECCc--H---HHHHHHHHH--hhc-CCEEEEE
Confidence 7754 2 245566666 655 5555544
No 471
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.30 E-value=6 Score=36.54 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=49.4
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh--hhhhc-CCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK--LLMGD-YRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~--~L~~~-~~~~D~VfiD 119 (220)
+|+-+|+ |..+..++..+...+-.|+.||.+ ++.++.+++. ..++++.||+.+ .+... ...+|.+++-
T Consensus 2 ~viIiG~---G~ig~~~a~~L~~~g~~v~vid~~-~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA---GQVGYTLAENLSGENNDVTVIDTD-EERLRRLQDR-----LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC---CHHHHHHHHHHHhCCCcEEEEECC-HHHHHHHHhh-----cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 5777875 555556666666557789999999 8887766653 247788888753 34443 3679999987
Q ss_pred CCC
Q 042616 120 CNI 122 (220)
Q Consensus 120 ~~k 122 (220)
.+.
T Consensus 73 ~~~ 75 (453)
T PRK09496 73 TDS 75 (453)
T ss_pred cCC
Confidence 655
No 472
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=88.27 E-value=2.1 Score=37.58 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=50.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.++||-+| + +|+.+.+|+..+...+.+|+.+..+ +...+.....+. +...+++++.+|..+. +......+|.|
T Consensus 5 ~k~vlVtG-~-~G~IG~~l~~~L~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 5 GKVVCVTG-A-SGYIASWIVKLLLFRGYTINATVRD-PKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCEEEEEC-C-chHHHHHHHHHHHHCCCEEEEEEcC-CcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 57889888 3 6888888888776657788877777 554433332222 2235689999887542 32333468988
Q ss_pred EEcCC
Q 042616 117 LIDCN 121 (220)
Q Consensus 117 fiD~~ 121 (220)
|--+.
T Consensus 82 ih~A~ 86 (325)
T PLN02989 82 FHTAS 86 (325)
T ss_pred EEeCC
Confidence 86554
No 473
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.26 E-value=2.8 Score=36.57 Aligned_cols=90 Identities=13% Similarity=0.035 Sum_probs=55.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCC
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNI 122 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k 122 (220)
+|.-||+|..| ..||.++.+.+-+|+.+|++ ++.++.+.+. +. +.....+. +. ....|+||+-.+.
T Consensus 2 ~I~IIG~G~mG---~sla~~L~~~g~~V~~~d~~-~~~~~~a~~~--g~---~~~~~~~~-~~----~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIG---GSLGLDLRSLGHTVYGVSRR-ESTCERAIER--GL---VDEASTDL-SL----LKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHH---HHHHHHHHHCCCEEEEEECC-HHHHHHHHHC--CC---cccccCCH-hH----hcCCCEEEEcCCH
Confidence 46667865443 34444444435689999999 8877766542 21 22111222 22 2467999999887
Q ss_pred CCccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 123 DIDGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 123 ~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
....++++.+.+. +.+ + .+|.|-.
T Consensus 68 --~~~~~~~~~l~~~--l~~-~-~ii~d~~ 91 (279)
T PRK07417 68 --GLLLPPSEQLIPA--LPP-E-AIVTDVG 91 (279)
T ss_pred --HHHHHHHHHHHHh--CCC-C-cEEEeCc
Confidence 6677888888887 533 4 5566643
No 474
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=88.25 E-value=2.7 Score=35.19 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchh--------h---hh
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQ--------K---LL 106 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~--------~---~L 106 (220)
.+.+.+|-+|+ +|..+..+++.+.+.+.+|+.++.+ ++..+...+.++.. ..++.++..|.. + .+
T Consensus 10 ~~~k~vlItG~--~g~iG~~la~~l~~~G~~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 10 LKDRIILVTGA--GDGIGREAALTYARHGATVILLGRT-EEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cCCCEEEEeCC--CchHHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence 46678898884 5666666666665557799999999 77665555555421 245677766653 1 11
Q ss_pred hhcCCCccEEEEcCC
Q 042616 107 MGDYRGADFVLIDCN 121 (220)
Q Consensus 107 ~~~~~~~D~VfiD~~ 121 (220)
....+++|.|+.-+.
T Consensus 87 ~~~~~~id~vi~~Ag 101 (247)
T PRK08945 87 EEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHhCCCCEEEECCc
Confidence 111357899987653
No 475
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.15 E-value=4.2 Score=33.76 Aligned_cols=79 Identities=9% Similarity=0.023 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~~---~ 110 (220)
+.+.+|-+|+ +|..+..+++.+.+.+.+|+.++.+ ++..+...+.++....++.++.+|..+. +... .
T Consensus 5 ~~k~vlItG~--sg~iG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA--SSGIGKATALAFAKAGWDLALVARS-QDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3467888884 4666666666665557899999999 7666555544443335688888876432 1111 2
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.++..+.
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 56899987664
No 476
>PRK14974 cell division protein FtsY; Provisional
Probab=88.14 E-value=4.1 Score=37.09 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCchHHHHHH--HHHHcCCCCcEEEEEeCCchhHHH---HHHHHhcccCCcEEEEE----cchhhh----h
Q 042616 40 NAQLIVMACSSIAVSRTLA--LVAAARQTGGRVVCILSGVIGDID---ASKKSLGRYANCIEFVK----GDAQKL----L 106 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~--LA~A~~~~~grV~tIE~d~~~~~~---~Ar~~l~g~~~~Ve~v~----gda~~~----L 106 (220)
++..|+-+|..|+|=+|.. ||..+.+.+.+|.-+..| .-+.. ..+.+...+ .+.++. +|+... +
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D-t~R~~a~eqL~~~a~~l--gv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD-TFRAGAIEQLEEHAERL--GVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC-cCcHHHHHHHHHHHHHc--CCceecccCCCCHHHHHHHHH
Confidence 4677888887569999854 665565545677666666 44333 223332211 122222 232222 2
Q ss_pred hhc-CCCccEEEEcCCCCCccHHHH---HHHHHhhcCCCCCCEEEEEecCCCCCCcc---ceEEEeeecCCcEEEEEEee
Q 042616 107 MGD-YRGADFVLIDCNIDIDGHKNV---FRAAKESVMHGSGAGVIVGYNALPKGSWR---GYKTHFLPIGEGLLVTRIGE 179 (220)
Q Consensus 107 ~~~-~~~~D~VfiD~~k~~~~y~~~---l~~l~~~~~L~~~Ggviv~dNv~~~g~~~---~~~s~~lPig~Gl~v~~~~~ 179 (220)
... ...+|+|+||...+...-.+. ++.+.+. +.|...++|.|-........ .|.. .+++ +|+.++..-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g~d~~~~a~~f~~-~~~~-~giIlTKlD~ 291 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRV--TKPDLVIFVGDALAGNDAVEQAREFNE-AVGI-DGVILTKVDA 291 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHh--hCCceEEEeeccccchhHHHHHHHHHh-cCCC-CEEEEeeecC
Confidence 111 356899999998732222333 4444444 55655555555332221121 2322 2333 7787777765
Q ss_pred c
Q 042616 180 N 180 (220)
Q Consensus 180 ~ 180 (220)
+
T Consensus 292 ~ 292 (336)
T PRK14974 292 D 292 (336)
T ss_pred C
Confidence 4
No 477
>PRK06949 short chain dehydrogenase; Provisional
Probab=88.13 E-value=4.3 Score=33.95 Aligned_cols=79 Identities=9% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh------hhh---cC
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL------LMG---DY 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~------L~~---~~ 110 (220)
..++||-+|. +|..+..++..+.+.+.+|+.+..+ ++.++.....+.....++.++..|..+. +.. ..
T Consensus 8 ~~k~ilItGa--sg~IG~~~a~~l~~~G~~Vi~~~r~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTGA--SSGLGARFAQVLAQAGAKVVLASRR-VERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEECC--CcHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4588888884 5666667666666557799999999 8877666666553334677888776421 111 13
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.++..+.
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 46898887654
No 478
>PLN02242 methionine gamma-lyase
Probab=88.13 E-value=11 Score=35.15 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc-ccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG-RYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~-g~~~~Ve~v~g 100 (220)
+.-.|...+|=..++...+.+.++-..+| +....+.+...+.+ +.+|++.++.=+.........+. ...-.+.++..
T Consensus 72 r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG-~~Ai~~al~al~~~-GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~ 149 (418)
T PLN02242 72 RHFNPTVLNLGRQMAALEGTEAAYCTASG-MSAISSVLLQLCSS-GGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDI 149 (418)
T ss_pred CCCChhHHHHHHHHHHHhCCCeEEEEccH-HHHHHHHHHHHhCC-CCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCC
Confidence 45678899999999998888888744422 33333333323444 77887665541112222222221 12123443333
Q ss_pred -chhhhhhhcCC-CccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 101 -DAQKLLMGDYR-GADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 101 -da~~~L~~~~~-~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|..++...+.. ...+|++..+... .+..++.+.+. ..|..|++||+...
T Consensus 150 ~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~------~~gi~livDea~~~ 204 (418)
T PLN02242 150 TDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAH------EKGVTVVVDNTFAP 204 (418)
T ss_pred CCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHH------HhCCEEEEECCCCc
Confidence 44444333333 4789999876511 12233333333 34899999999854
No 479
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=88.07 E-value=5.9 Score=35.30 Aligned_cols=119 Identities=9% Similarity=0.067 Sum_probs=74.6
Q ss_pred hHHHHHHHHhc--CCCCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHH
Q 042616 9 ATKAYLQALKM--GKRGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKK 86 (220)
Q Consensus 9 a~~aY~~~l~~--~~~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~ 86 (220)
+.+.|.+-... ...-..| +-.++..|-..-+...|-|+||| -+ -||..- --+|+|.|.- +
T Consensus 148 afdlYH~gfr~QV~kWP~nP-ld~ii~~ik~r~~~~vIaD~GCG-Ea----kiA~~~---~~kV~SfDL~-a-------- 209 (325)
T KOG3045|consen 148 AFDLYHAGFRSQVKKWPENP-LDVIIRKIKRRPKNIVIADFGCG-EA----KIASSE---RHKVHSFDLV-A-------- 209 (325)
T ss_pred HHHHHHHHHHHHHHhCCCCh-HHHHHHHHHhCcCceEEEecccc-hh----hhhhcc---ccceeeeeee-c--------
Confidence 45556555322 2344444 56777777666667778999986 33 344433 3489999887 1
Q ss_pred HhcccCCcEEEEEcchhhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 87 SLGRYANCIEFVKGDAQKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 87 ~l~g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
+ +-+++.-|..+ +|--.++.|+++.--..=..++.+.+..+.+. |++ ||.+-+-.|-++
T Consensus 210 ----~--~~~V~~cDm~~-vPl~d~svDvaV~CLSLMgtn~~df~kEa~Ri--Lk~-gG~l~IAEv~SR 268 (325)
T KOG3045|consen 210 ----V--NERVIACDMRN-VPLEDESVDVAVFCLSLMGTNLADFIKEANRI--LKP-GGLLYIAEVKSR 268 (325)
T ss_pred ----C--CCceeeccccC-CcCccCcccEEEeeHhhhcccHHHHHHHHHHH--hcc-CceEEEEehhhh
Confidence 1 22334445444 44335789998765443235788899999998 876 777766667654
No 480
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.05 E-value=7.5 Score=31.70 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=42.7
Q ss_pred EEEEEcCCchHHHHHH-HHHHcCCCCcEEEEEeCCch------------------hHHHHHHHHhccc--CCcEEEEEcc
Q 042616 43 LIVMACSSIAVSRTLA-LVAAARQTGGRVVCILSGVI------------------GDIDASKKSLGRY--ANCIEFVKGD 101 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~-LA~A~~~~~grV~tIE~d~~------------------~~~~~Ar~~l~g~--~~~Ve~v~gd 101 (220)
+|+-+|+|+.|...+. |+.+ . -++++-+|.| . .+.+.+++.++.+ .-+++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~-G--vg~i~lvD~D-~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-G--VGNLKLVDFD-VVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-C--CCeEEEEeCC-EEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 4788999878876554 4442 2 3789999998 4 3455566666522 2235555444
Q ss_pred hhh-hhhhcCCCccEEEEc
Q 042616 102 AQK-LLMGDYRGADFVLID 119 (220)
Q Consensus 102 a~~-~L~~~~~~~D~VfiD 119 (220)
..+ .++.+...+|+|+.-
T Consensus 77 ~~~~~~~~~l~~~DlVi~~ 95 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEA 95 (174)
T ss_pred cChhhHHHHhcCCCEEEEC
Confidence 322 222334679977644
No 481
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.01 E-value=10 Score=35.42 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=67.2
Q ss_pred CCCChhHHHHHHHHHhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchh-HHHHHHHHhcccCCcEEEEEc
Q 042616 22 RGKEPDVGEFISALAAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIG-DIDASKKSLGRYANCIEFVKG 100 (220)
Q Consensus 22 ~~~~p~~~~~L~~La~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~-~~~~Ar~~l~g~~~~Ve~v~g 100 (220)
+.-.|...+|-..+++..+.+..+-.++| +....+.|...+.+ +.+|++.+.. -. ........+....-.+.++..
T Consensus 59 r~~~p~~~~le~~lA~l~g~~~al~~~SG-~~Ai~~al~all~p-Gd~VIv~~~~-y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 59 RITNPTNAVLEERVAALEGGTAALAVASG-HAAQFLVFHTLLQP-GDEFIAARKL-YGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEEcCH-HHHHHHHHHHHhCC-CCEEEEecCc-chhHHHHHHHHHHhcCcEEEEECC
Confidence 45567788888888888888777766543 33333333333444 7888876655 22 112222222211123444432
Q ss_pred -chhhhhhhcCCCccEEEEcCCCCC----ccHHHHHHHHHhhcCCCCCCEEEEEecCCC
Q 042616 101 -DAQKLLMGDYRGADFVLIDCNIDI----DGHKNVFRAAKESVMHGSGAGVIVGYNALP 154 (220)
Q Consensus 101 -da~~~L~~~~~~~D~VfiD~~k~~----~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~ 154 (220)
|..++...+.....+|++...... .+..++.+.+. ..|.++++||+..
T Consensus 136 ~d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~------~~gi~livD~a~a 188 (427)
T PRK05994 136 DDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAH------RAGLPLIVDNTLA 188 (427)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHH------HcCCEEEEECCcc
Confidence 334433333345789999654311 13333333333 3489999999975
No 482
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=87.92 E-value=1.3 Score=40.81 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=62.5
Q ss_pred HHHHHHHHh-hCCCCEEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhccc-CCcEEEEEcchhh
Q 042616 29 GEFISALAA-GNNAQLIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLGRY-ANCIEFVKGDAQK 104 (220)
Q Consensus 29 ~~~L~~La~-~~~a~~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~g~-~~~Ve~v~gda~~ 104 (220)
+.+|--|+- ..+..+|||.++ +.|.-|+.|.+|+..- .|.|+|=|.| +.++..-+..++-+ +.++.+...++..
T Consensus 143 vSmlPvL~L~v~p~~~VLDmCA-APG~Kt~qLLeal~~~~~~g~vvaND~d-~~R~~~L~~q~~~l~~~~~~v~~~~~~~ 220 (375)
T KOG2198|consen 143 VSMLPVLALGVKPGDKVLDMCA-APGGKTAQLLEALHKDPTRGYVVANDVD-PKRLNMLVHQLKRLPSPNLLVTNHDASL 220 (375)
T ss_pred hhccchhhcccCCCCeeeeecc-CCCccHHHHHHHHhcCCCCCeeEecccC-HHHHHHHHHHHhccCCcceeeeccccee
Confidence 334433333 466799999998 6999999999999842 5799999999 99988877766522 2344555544432
Q ss_pred hh--------hhcCCCccEEEEcCCC
Q 042616 105 LL--------MGDYRGADFVLIDCNI 122 (220)
Q Consensus 105 ~L--------~~~~~~~D~VfiD~~k 122 (220)
+- +.-...||-|++|.+=
T Consensus 221 ~p~~~~~~~~~~~~~~fDrVLvDVPC 246 (375)
T KOG2198|consen 221 FPNIYLKDGNDKEQLKFDRVLVDVPC 246 (375)
T ss_pred ccccccccCchhhhhhcceeEEeccc
Confidence 11 1112479999999654
No 483
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.79 E-value=4.2 Score=33.72 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhh------hhhhc---C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQK------LLMGD---Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~------~L~~~---~ 110 (220)
+.+.+|-+|+ +|..+..+++.+...+.+|+.++.+ +...+.+.+.+.....++.++..|..+ .+... .
T Consensus 4 ~~~~~lItG~--~g~iG~~~a~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG--AQGLGRAMAEYLAQKGAKLALIDLN-QEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC--CchHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4578888884 3555555665555557899999999 776666655554333467777777432 12111 2
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.||.-+.
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 56899986543
No 484
>PRK06153 hypothetical protein; Provisional
Probab=87.63 E-value=7 Score=36.46 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=53.6
Q ss_pred HhhCCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCch---------------------hHHHHHHHHhcccCCc
Q 042616 36 AAGNNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVI---------------------GDIDASKKSLGRYANC 94 (220)
Q Consensus 36 a~~~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~---------------------~~~~~Ar~~l~g~~~~ 94 (220)
-+..+..+|+-+||||+|...+.+...++ -++++-||.|.- .+++.+++.+......
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~G--VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~ 248 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTP--VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG 248 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcC--CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence 34446678999999999987775443333 489999888711 2334444444322123
Q ss_pred EEEEEcchh-hhhhhcCCCccEEEEcCCCCCccHHHH-HHHHHhh
Q 042616 95 IEFVKGDAQ-KLLMGDYRGADFVLIDCNIDIDGHKNV-FRAAKES 137 (220)
Q Consensus 95 Ve~v~gda~-~~L~~~~~~~D~VfiD~~k~~~~y~~~-l~~l~~~ 137 (220)
|+.+..... +.+.. ...+|+||.-.+. .....+ .+.+.+.
T Consensus 249 I~~~~~~I~~~n~~~-L~~~DiV~dcvDn--~~aR~~ln~~a~~~ 290 (393)
T PRK06153 249 IVPHPEYIDEDNVDE-LDGFTFVFVCVDK--GSSRKLIVDYLEAL 290 (393)
T ss_pred EEEEeecCCHHHHHH-hcCCCEEEEcCCC--HHHHHHHHHHHHHc
Confidence 443332221 11222 3679999876665 444333 3444444
No 485
>PRK06194 hypothetical protein; Provisional
Probab=87.63 E-value=4.1 Score=34.90 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-------C
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-------Y 110 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-------~ 110 (220)
+.+++|-.|. +|..+..|++.+...+.+|+.++.+ ++.++...+.+.....++.++.+|..+. +..+ .
T Consensus 5 ~~k~vlVtGa--sggIG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGA--ASGFGLAFARIGAALGMKLVLADVQ-QDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCC--ccHHHHHHHHHHHHCCCEEEEEeCC-hHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4578898883 4666667776666557899999998 7766555444432224678888886431 2111 2
Q ss_pred CCccEEEEcCCC
Q 042616 111 RGADFVLIDCNI 122 (220)
Q Consensus 111 ~~~D~VfiD~~k 122 (220)
+++|+||.-+..
T Consensus 82 g~id~vi~~Ag~ 93 (287)
T PRK06194 82 GAVHLLFNNAGV 93 (287)
T ss_pred CCCCEEEECCCC
Confidence 468999877654
No 486
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.61 E-value=5.4 Score=38.03 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=57.0
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCC--CcEEEEEeCCchhHHHHHHHHhc-----ccC-------C-cEEEEEcchhhhhh
Q 042616 43 LIVMACSSIAVSRTLALVAAARQT--GGRVVCILSGVIGDIDASKKSLG-----RYA-------N-CIEFVKGDAQKLLM 107 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~--~grV~tIE~d~~~~~~~Ar~~l~-----g~~-------~-~Ve~v~gda~~~L~ 107 (220)
+|.-||+|.+|. .+|.++... +-+|+++|.| ++.++..++... ++. . +.. ...|..+.+
T Consensus 3 ~I~ViG~GyvGl---~~A~~lA~~g~g~~V~gvD~~-~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i- 76 (473)
T PLN02353 3 KICCIGAGYVGG---PTMAVIALKCPDIEVVVVDIS-VPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV- 76 (473)
T ss_pred EEEEECCCHHHH---HHHHHHHhcCCCCeEEEEECC-HHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH-
Confidence 577788654444 444333332 3579999999 888877554321 111 0 111 122222222
Q ss_pred hcCCCccEEEEcC--CCC--------Ccc---HHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 042616 108 GDYRGADFVLIDC--NID--------IDG---HKNVFRAAKESVMHGSGAGVIVGYNALPKG 156 (220)
Q Consensus 108 ~~~~~~D~VfiD~--~k~--------~~~---y~~~l~~l~~~~~L~~~Ggviv~dNv~~~g 156 (220)
...|++||-- +.+ ..+ .....+.+.+. |+ +|.+||...+.+.|
T Consensus 77 ---~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~--l~-~~~lVv~~STvp~G 132 (473)
T PLN02353 77 ---AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV--SK-SDKIVVEKSTVPVK 132 (473)
T ss_pred ---hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhh--CC-CCcEEEEeCCCCCC
Confidence 3568888732 220 012 25566677777 65 58888888887777
No 487
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.61 E-value=10 Score=34.05 Aligned_cols=101 Identities=21% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc---c-cCCcEEEEE-cchhhhhhhcCCCc
Q 042616 40 NAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG---R-YANCIEFVK-GDAQKLLMGDYRGA 113 (220)
Q Consensus 40 ~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~---g-~~~~Ve~v~-gda~~~L~~~~~~~ 113 (220)
+..+|.-||+|..|++...++ +.... ..++=+|++ ++.++ +... +. . ......+.. +|.. .+ ...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l-~~~~~-~~l~L~Di~-~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~-~l----~~A 74 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLI-LQKNL-GDVVLYDVI-KGVPQ-GKALDLKHFSTLVGSNINILGTNNYE-DI----KDS 74 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHH-HHCCC-CeEEEEECC-Cccch-hHHHHHhhhccccCCCeEEEeCCCHH-Hh----CCC
Confidence 456899999987788755444 33322 579999999 65543 3222 11 1 112244443 4533 33 457
Q ss_pred cEEEEcCCCCCc--------------cHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 114 DFVLIDCNIDID--------------GHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 114 D~VfiD~~k~~~--------------~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+|++-+..... -..++.+.+.+. .|++-+|++-|.
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~---~p~a~vivvsNP 124 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY---CPNAFVICVTNP 124 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecCh
Confidence 999998844111 134677777776 264547777664
No 488
>PRK11524 putative methyltransferase; Provisional
Probab=87.57 E-value=1.3 Score=39.07 Aligned_cols=55 Identities=9% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHhh--CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 29 GEFISALAAG--NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 29 ~~~L~~La~~--~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
-+|+..++.. .....|||--+| +|.++++. ...+.+.+++|.+ ++.++.|++.++
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~G-SGTT~~AA----~~lgR~~IG~Ei~-~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAG-SFTTGAVA----KASGRKFIGIEIN-SEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCC-CcHHHHHH----HHcCCCEEEEeCC-HHHHHHHHHHHH
Confidence 5667766664 568999998765 78665522 2247799999999 999999999985
No 489
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.51 E-value=6 Score=34.33 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=55.9
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhccc---CCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRY---ANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~---~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|.-||+|..|.. +|..+.+.+-.|+.++.+ ++.++..++. ++ ........ ...+-... ..++|+||+-
T Consensus 2 ~I~IiG~G~~G~~---~a~~L~~~g~~V~~~~r~-~~~~~~~~~~--g~~~~~~~~~~~~-~~~~~~~~-~~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGL---FGAALAQAGHDVTLVARR-GAHLDALNEN--GLRLEDGEITVPV-LAADDPAE-LGPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHH---HHHHHHhCCCeEEEEECC-hHHHHHHHHc--CCcccCCceeecc-cCCCChhH-cCCCCEEEEe
Confidence 5788998766643 233332335689999998 7776655542 22 11111000 00111112 2679999999
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCE-EEEEecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAG-VIVGYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Gg-viv~dNv 152 (220)
.+. .....+++.+.+. +.+ +. +|..-|-
T Consensus 74 ~k~--~~~~~~~~~l~~~--l~~-~~~iv~~~nG 102 (304)
T PRK06522 74 VKA--YQLPAALPSLAPL--LGP-DTPVLFLQNG 102 (304)
T ss_pred ccc--ccHHHHHHHHhhh--cCC-CCEEEEecCC
Confidence 887 7778889999987 654 54 4444443
No 490
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.48 E-value=3.5 Score=37.60 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG 89 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~ 89 (220)
.+.+.|--+|.|+.|..++-+|.|+ +-||+.|+.. ...-+.|-+.+.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM---G~rV~vis~~-~~kkeea~~~LG 226 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM---GMRVTVISTS-SKKKEEAIKSLG 226 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh---CcEEEEEeCC-chhHHHHHHhcC
Confidence 3567777778877999999999997 6799999999 656665655554
No 491
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.46 E-value=2.2 Score=37.36 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=50.4
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhh--hhhcCCCccEE
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKL--LMGDYRGADFV 116 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~--L~~~~~~~D~V 116 (220)
.++||-.| + +|+.+.+++..+.+.+-+|+++..+ ....+.....+. +...+++++.+|..+. +......+|.|
T Consensus 5 ~~~vlVTG-a-tG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 5 GKLVCVTG-A-SGYIASWIVKLLLLRGYTVKATVRD-LTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCEEEEEC-C-CcHHHHHHHHHHHHCCCEEEEEECC-CcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence 46899888 3 7888888888776656788877777 554443333322 2335789999987542 32333468988
Q ss_pred EEcCC
Q 042616 117 LIDCN 121 (220)
Q Consensus 117 fiD~~ 121 (220)
|--+.
T Consensus 82 ih~A~ 86 (322)
T PLN02986 82 FHTAS 86 (322)
T ss_pred EEeCC
Confidence 85553
No 492
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.41 E-value=16 Score=32.19 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=56.0
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHH-HHHHhcc---cCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDA-SKKSLGR---YANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~-Ar~~l~g---~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
.+|.-||+|..|+....++.. ...+ .|+-+|.+ ++.++. +...... ......+.. +|..+ + ...|+|
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-~~~~-ev~L~D~~-~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~----~~aDiV 74 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-KELG-DVVLFDIV-EGVPQGKALDIAEAAPVEGFDTKITGTNDYED-I----AGSDVV 74 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCe-EEEEEECC-CchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-H----CCCCEE
Confidence 478889998778775554432 2213 89999999 665532 2211121 111234432 44432 3 457999
Q ss_pred EEcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 117 LIDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 117 fiD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
|+-..... ..+.++++.+.+. . |++-+|++-|.
T Consensus 75 ii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~--~-~~~~viv~tNP 121 (307)
T PRK06223 75 VITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY--A-PDAIVIVVTNP 121 (307)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH--C-CCeEEEEecCc
Confidence 98764311 1245667777776 3 64556777664
No 493
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.32 E-value=17 Score=32.43 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHH-HHHHHHhcccCCcEEEEE-cchhhhhhhcCCCccEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDI-DASKKSLGRYANCIEFVK-GDAQKLLMGDYRGADFV 116 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~-~~Ar~~l~g~~~~Ve~v~-gda~~~L~~~~~~~D~V 116 (220)
...++|+-+|+|..|...+..+.. ....+|+-++++ +++. +.|++ +. . ..+. .+..+. ....|+|
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~--~g~~~V~v~~r~-~~ra~~la~~-~g---~--~~~~~~~~~~~----l~~aDvV 242 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAA--KGVAEITIANRT-YERAEELAKE-LG---G--NAVPLDELLEL----LNEADVV 242 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHH--cCCCEEEEEeCC-HHHHHHHHHH-cC---C--eEEeHHHHHHH----HhcCCEE
Confidence 467999999987666655544433 113578889999 7765 33443 22 1 2222 222232 2458999
Q ss_pred EEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 042616 117 LIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNALPK 155 (220)
Q Consensus 117 fiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~~~ 155 (220)
|.-... ..+.+.++.+... . +.++.+++|-..++
T Consensus 243 i~at~~--~~~~~~~~~~~~~--~-~~~~~~viDlavPr 276 (311)
T cd05213 243 ISATGA--PHYAKIVERAMKK--R-SGKPRLIVDLAVPR 276 (311)
T ss_pred EECCCC--CchHHHHHHHHhh--C-CCCCeEEEEeCCCC
Confidence 987776 5554445555443 2 23678888866654
No 494
>PLN02602 lactate dehydrogenase
Probab=87.31 E-value=14 Score=33.75 Aligned_cols=101 Identities=4% Similarity=0.022 Sum_probs=62.3
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHH-HHHHHhc--ccCCcEEEEE-cchhhhhhhcCCCccEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDID-ASKKSLG--RYANCIEFVK-GDAQKLLMGDYRGADFVL 117 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~-~Ar~~l~--g~~~~Ve~v~-gda~~~L~~~~~~~D~Vf 117 (220)
.+|.-||+|.+|++.++++. .......++-+|.+ ++.++ .+..... .+...+.+.. +|..+ + ...|+|+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~-~~~l~~el~LiDi~-~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~----~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTIL-TQDLADELALVDVN-PDKLRGEMLDLQHAAAFLPRTKILASTDYAV-T----AGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCC-CchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-h----CCCCEEE
Confidence 68999999988987776554 44446789999999 65443 3333333 2223355554 45433 3 4679999
Q ss_pred EcCCCCC--------------ccHHHHHHHHHhhcCCCCCCEEEEEecC
Q 042616 118 IDCNIDI--------------DGHKNVFRAAKESVMHGSGAGVIVGYNA 152 (220)
Q Consensus 118 iD~~k~~--------------~~y~~~l~~l~~~~~L~~~Ggviv~dNv 152 (220)
+-+...+ .-+.++.+.+.+. .|++-+|++-|-
T Consensus 111 itAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~---~p~~ivivvtNP 156 (350)
T PLN02602 111 VTAGARQIPGESRLNLLQRNVALFRKIIPELAKY---SPDTILLIVSNP 156 (350)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecCc
Confidence 9876521 1123555566665 376666777664
No 495
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.29 E-value=2.9 Score=36.66 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=55.5
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc---------cc-C--------CcEEEEEcchh
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG---------RY-A--------NCIEFVKGDAQ 103 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~---------g~-~--------~~Ve~v~gda~ 103 (220)
++|--||+|..|. .+|..+...+-+|+.+|++ ++.++.+++.++ +. . .++. ...+.
T Consensus 5 ~~V~vIG~G~mG~---~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~- 78 (295)
T PLN02545 5 KKVGVVGAGQMGS---GIAQLAAAAGMDVWLLDSD-PAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL- 78 (295)
T ss_pred CEEEEECCCHHHH---HHHHHHHhcCCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-
Confidence 5687788754443 3333333336689999999 988877665432 11 0 0111 12222
Q ss_pred hhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEE
Q 042616 104 KLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVG 149 (220)
Q Consensus 104 ~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~ 149 (220)
+.+ ...|+||.-..-+...-..+|..+... +. ++.+|+.
T Consensus 79 ~~~----~~aD~Vieav~e~~~~k~~v~~~l~~~--~~-~~~il~s 117 (295)
T PLN02545 79 EEL----RDADFIIEAIVESEDLKKKLFSELDRI--CK-PSAILAS 117 (295)
T ss_pred HHh----CCCCEEEEcCccCHHHHHHHHHHHHhh--CC-CCcEEEE
Confidence 222 457999987764224456778888876 54 4766654
No 496
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.29 E-value=4.2 Score=34.03 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=49.9
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhh--hhhc-CCCccEEEE
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKL--LMGD-YRGADFVLI 118 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~--L~~~-~~~~D~Vfi 118 (220)
++||-.|+ +|..+..++..+.+.+.+|+++..+ +...+..+........+++++.+|..+. +... ...+|.||.
T Consensus 3 ~~vlVtGa--sg~iG~~ia~~l~~~G~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA--GSGFGREVALRLARKGHNVIAGVQI-APQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC--CCHHHHHHHHHHHHCCCEEEEEeCC-HHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 56888884 4666666666665557899999998 7665555544432223578888876442 2121 347999998
Q ss_pred cCC
Q 042616 119 DCN 121 (220)
Q Consensus 119 D~~ 121 (220)
.+.
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 765
No 497
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.25 E-value=4.2 Score=34.69 Aligned_cols=78 Identities=8% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc--ccCCcEEEEEcchhhhh-----hh---cC
Q 042616 41 AQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG--RYANCIEFVKGDAQKLL-----MG---DY 110 (220)
Q Consensus 41 a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~--g~~~~Ve~v~gda~~~L-----~~---~~ 110 (220)
.+.+|-+|+ +|..+..++..+..-+-+|+++..+ ++..+.....+. +...+++++..|..+.- .. ..
T Consensus 3 ~k~~lItGa--sg~iG~~la~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTGA--SSGFGLLTTLELAKKGYLVIATMRN-PEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CCEEEEECC--CchHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 467888884 5666667666655547799999998 776655544443 33357888888764421 11 13
Q ss_pred CCccEEEEcCC
Q 042616 111 RGADFVLIDCN 121 (220)
Q Consensus 111 ~~~D~VfiD~~ 121 (220)
+++|.|+..+.
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 57899987764
No 498
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.25 E-value=9.5 Score=35.72 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhcccCCcEEEEEcchhhhhhhcCCCccEEEE
Q 042616 39 NNAQLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLGRYANCIEFVKGDAQKLLMGDYRGADFVLI 118 (220)
Q Consensus 39 ~~a~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~g~~~~Ve~v~gda~~~L~~~~~~~D~Vfi 118 (220)
...++|+-+|+|.+|...+.++++. +.+|+.+|.| |.....|+.. |. ++. +..+.+ ...|++|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~---Ga~ViV~d~d-p~r~~~A~~~--G~----~v~--~leeal----~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM---GARVIVTEVD-PIRALEAAMD--GF----RVM--TMEEAA----KIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC---cCEEEEEeCC-hhhHHHHHhc--CC----EeC--CHHHHH----hcCCEEEE
Confidence 4578999999887887777666654 7799999999 8765444431 32 221 233433 35698865
Q ss_pred cCCCCCccHHHHHHH-HHhhcCCCCCCEEEEEe
Q 042616 119 DCNIDIDGHKNVFRA-AKESVMHGSGAGVIVGY 150 (220)
Q Consensus 119 D~~k~~~~y~~~l~~-l~~~~~L~~~Ggviv~d 150 (220)
+.- ....++. .... ++ +|++|+.-
T Consensus 257 -aTG----~~~vI~~~~~~~--mK-~GailiN~ 281 (406)
T TIGR00936 257 -ATG----NKDVIRGEHFEN--MK-DGAIVANI 281 (406)
T ss_pred -CCC----CHHHHHHHHHhc--CC-CCcEEEEE
Confidence 332 2344443 4444 44 58877753
No 499
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.23 E-value=7.5 Score=33.84 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=53.4
Q ss_pred EEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHH-hc--ccCCcEEEEEcchhhhhhhcCCCccEEEEc
Q 042616 43 LIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKS-LG--RYANCIEFVKGDAQKLLMGDYRGADFVLID 119 (220)
Q Consensus 43 ~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~-l~--g~~~~Ve~v~gda~~~L~~~~~~~D~VfiD 119 (220)
+|+-||+|..|..-.+ .+.+.+-.|+.++.. +..+..++. +. .......+ .............++|+||+-
T Consensus 2 kI~IiG~G~iG~~~a~---~L~~~g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGG---RLLEAGRDVTFLVRP--KRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred eEEEECCCHHHHHHHH---HHHHCCCceEEEecH--HHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEE
Confidence 5788898766654333 222224568888873 444444432 21 11111111 110111011112679999999
Q ss_pred CCCCCccHHHHHHHHHhhcCCCCCCEEEE-EecC
Q 042616 120 CNIDIDGHKNVFRAAKESVMHGSGAGVIV-GYNA 152 (220)
Q Consensus 120 ~~k~~~~y~~~l~~l~~~~~L~~~Ggviv-~dNv 152 (220)
.+. .....+++.+.+. +.+ +.+|+ .-|-
T Consensus 76 vk~--~~~~~~~~~l~~~--~~~-~~~ii~~~nG 104 (305)
T PRK12921 76 VKA--YQLDAAIPDLKPL--VGE-DTVIIPLQNG 104 (305)
T ss_pred ecc--cCHHHHHHHHHhh--cCC-CCEEEEeeCC
Confidence 887 7788899999887 654 66555 4343
No 500
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.18 E-value=6.1 Score=34.59 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred CEEEEEcCCchHHHHHHHHHHcCCCCcEEEEEeCCchhHHHHHHHHhc----------cc---------CCcEEEEEcch
Q 042616 42 QLIVMACSSIAVSRTLALVAAARQTGGRVVCILSGVIGDIDASKKSLG----------RY---------ANCIEFVKGDA 102 (220)
Q Consensus 42 ~~ILEIGtg~~G~sTl~LA~A~~~~~grV~tIE~d~~~~~~~Ar~~l~----------g~---------~~~Ve~v~gda 102 (220)
++|.-||+|..|.. + |..+...+-+|+.+|.+ ++.++.+++.++ .+ ..++++ ..|.
T Consensus 4 ~kIaViGaG~mG~~-i--A~~la~~G~~V~l~d~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~ 78 (287)
T PRK08293 4 KNVTVAGAGVLGSQ-I--AFQTAFHGFDVTIYDIS-DEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDL 78 (287)
T ss_pred cEEEEECCCHHHHH-H--HHHHHhcCCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCH
Confidence 57888897655543 2 33322336689999999 998888876542 01 012332 3344
Q ss_pred hhhhhhcCCCccEEEEcCCCCCccHHHHHHHHHhhcCCCCCCEEEEEecCC
Q 042616 103 QKLLMGDYRGADFVLIDCNIDIDGHKNVFRAAKESVMHGSGAGVIVGYNAL 153 (220)
Q Consensus 103 ~~~L~~~~~~~D~VfiD~~k~~~~y~~~l~~l~~~~~L~~~Ggviv~dNv~ 153 (220)
.+.+ ...|+|+.-.+-+...-..+++.+.+. + +++. |++.|..
T Consensus 79 ~~a~----~~aDlVieavpe~~~~k~~~~~~l~~~--~-~~~~-ii~sntS 121 (287)
T PRK08293 79 AEAV----KDADLVIEAVPEDPEIKGDFYEELAKV--A-PEKT-IFATNSS 121 (287)
T ss_pred HHHh----cCCCEEEEeccCCHHHHHHHHHHHHhh--C-CCCC-EEEECcc
Confidence 4433 457999987764112346778888887 5 4355 4555554
Done!