BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042619
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/412 (43%), Positives = 255/412 (61%), Gaps = 13/412 (3%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L + SI++D++++TAWV+AGAT+GE+YY I+EK+ F G CP+V
Sbjct: 105 LRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYG 164
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
+MR YGLAADN++DA +V+ G++LDR++MGEDLFWAIR +FGII AWK+KL
Sbjct: 165 ALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAV 224
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIR---VIIKLANAGPKGKRTVTT 176
K +E G K+ KWQ +A K D+DL + + + + K K TV
Sbjct: 225 PSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHG 284
Query: 177 SYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQN----NTEPEILL 232
++++F G + L+ +M+ FPELG+ + DC E SWI + ++ + N N + EILL
Sbjct: 285 YFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILL 344
Query: 233 EAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEED--NPVMIWNPYGGMMSKISEYEI 290
+ K F K D+VK+PIPE+ + + + L EED + + PYGG+M +ISE I
Sbjct: 345 DRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAI 404
Query: 291 PFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDL 350
PFPHR G ++++ Y W+ Q++ KH W+R +Y++ PY S PR AY+NYRDLDL
Sbjct: 405 PFPHRAGIMYELWYTASWE--KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDL 462
Query: 351 G-LNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPVP 401
G N +YT+A WG KYF NFNRLV+VK KVDP+N FR+EQSIPP+P
Sbjct: 463 GKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 237/402 (58%), Gaps = 15/402 (3%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
+ K+R++ +D TAWV +GA +G+LYY I++ S GF AG+C ++
Sbjct: 108 MNKMRAVSIDGKAATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFG 167
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
++RKYG AADNV+DA++VDA+GR+LDR+AMGED FWAIR SFGI+ +W+VKL
Sbjct: 168 MLLRKYGTAADNVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPV 227
Query: 121 XXXXXXXXXSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNA 180
K +++GA ++ KWQ VA L +DL IR++ A + A
Sbjct: 228 PPKVTVFQVHKGIKEGAIDLVTKWQTVAPALPDDLMIRIMAMGQGA----------MFEA 277
Query: 181 LFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKN 240
L+LG + L+ +M FPELG+ C E +WI SV YI T ++L + K
Sbjct: 278 LYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESVPYIPMGPKGTVRDLLNRTSNI-KA 336
Query: 241 YFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNIF 300
+ K KSD+V EPIP+S E ++ L++ VMI +PYGG ++ + E PFP R G +F
Sbjct: 337 FGKYKSDYVLEPIPKSDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLF 396
Query: 301 KIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFN--T 358
IQY+ W + A W R +YD+M PY S PR AYVNYRDLDLG+N+ +
Sbjct: 397 NIQYVVYWF--GEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVS 454
Query: 359 SYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
+Y WG KYFK NF RL R K K+DP++ FR+EQSIPP+
Sbjct: 455 TYASGKVWGEKYFKGNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 318 bits (814), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 239/403 (59%), Gaps = 15/403 (3%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L K+R++ VD +TAWV +GA +GELYY I + S F AG+CP++
Sbjct: 106 LNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFG 165
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
++RKYG+AA+NV+D ++VDA G++ D+++MG+D FWA+R SFGI++AW+VKL
Sbjct: 166 MLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPV 225
Query: 121 XXXXXXXXXSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNA 180
SKT+ +GA I+ KWQ VA +L DL IR+I + GPK ++ A
Sbjct: 226 PPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQ----GPKA------TFEA 275
Query: 181 LFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKN 240
++LG + L +M FPELG+ + C E SWI+S+ ++ + + LL + FK
Sbjct: 276 MYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKP 335
Query: 241 YFKAKSDFVKEPIPESVLEGLWKM-LLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKGNI 299
+ + KSD+V +P P++V E + L++ +MI++PYG +S E PFPHRKG +
Sbjct: 336 FAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVL 395
Query: 300 FKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLGLNKKFN-- 357
F IQY+ W A W + +Y+YM PY S PR AY NYRD+DLG N+ N
Sbjct: 396 FNIQYVNYWFAPGAAAAPL--SWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDV 453
Query: 358 TSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
++Y WG KYFK NF RL K KVDP + FR+EQSIPP+
Sbjct: 454 STYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 297 bits (760), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 226/408 (55%), Gaps = 18/408 (4%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L + +D+ ++TAWV++G+T+GELYY I+E S+ GF AG CP+V
Sbjct: 97 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 156
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
M RKYGLAADNVVDA ++DA G ILDR+AMGED+FWAIR +G I AWK+KL
Sbjct: 157 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 216
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYN 179
+K + AT +L+KWQ VA++L+ED + V+ G ++ V +
Sbjct: 217 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTML 270
Query: 180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLF- 238
G + FPELGL D +E SW S Y+A + ++ L FL
Sbjct: 271 GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQ----LNNRFLKF 326
Query: 239 -KNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKG 297
+ FK K D KEP+P GL + L +E N + N +GG MSKIS PFPHR G
Sbjct: 327 DERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSG 386
Query: 298 NIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG----LN 353
++Y+ W +QK T+ W+ ++Y++M P+ S PR YVN+ DLDLG N
Sbjct: 387 TRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGN 446
Query: 354 KKFNTSYTEAS-AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
K + E S +WG YF N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 447 KTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 297 bits (760), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 226/408 (55%), Gaps = 18/408 (4%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L + +D+ ++TAWV++G+T+GELYY I+E S+ GF AG CP+V
Sbjct: 100 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 159
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
M RKYGLAADNVVDA ++DA G ILDR+AMGED+FWAIR +G I AWK+KL
Sbjct: 160 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 219
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYN 179
+K + AT +L+KWQ VA++L+ED + V+ G ++ V +
Sbjct: 220 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTML 273
Query: 180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLF- 238
G + FPELGL D +E SW S Y+A + ++ L FL
Sbjct: 274 GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQ----LNNRFLKF 329
Query: 239 -KNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKG 297
+ FK K D KEP+P GL + L +E N + N +GG MSKIS PFPHR G
Sbjct: 330 DERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSG 389
Query: 298 NIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG----LN 353
++Y+ W +QK T+ W+ ++Y++M P+ S PR YVN+ DLDLG N
Sbjct: 390 TRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGN 449
Query: 354 KKFNTSYTEAS-AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
K + E S +WG YF N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 450 KTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 497
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 297 bits (760), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 226/408 (55%), Gaps = 18/408 (4%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L + +D+ ++TAWV++G+T+GELYY I+E S+ GF AG CP+V
Sbjct: 122 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 181
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
M RKYGLAADNVVDA ++DA G ILDR+AMGED+FWAIR +G I AWK+KL
Sbjct: 182 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 241
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYN 179
+K + AT +L+KWQ VA++L+ED + V+ G ++ V +
Sbjct: 242 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTML 295
Query: 180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLF- 238
G + FPELGL D +E SW S Y+A + ++ L FL
Sbjct: 296 GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQ----LNNRFLKF 351
Query: 239 -KNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKG 297
+ FK K D KEP+P GL + L +E N + N +GG MSKIS PFPHR G
Sbjct: 352 DERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSG 411
Query: 298 NIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG----LN 353
++Y+ W +QK T+ W+ ++Y++M P+ S PR YVN+ DLDLG N
Sbjct: 412 TRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGN 471
Query: 354 KKFNTSYTEAS-AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
K + E S +WG YF N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 472 KTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 519
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 297 bits (760), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 226/408 (55%), Gaps = 18/408 (4%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L + +D+ ++TAWV++G+T+GELYY I+E S+ GF AG CP+V
Sbjct: 103 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFG 162
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
M RKYGLAADNVVDA ++DA G ILDR+AMGED+FWAIR +G I AWK+KL
Sbjct: 163 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 222
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYN 179
+K + AT +L+KWQ VA++L+ED + V+ G ++ V +
Sbjct: 223 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTML 276
Query: 180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLF- 238
G + FPELGL D +E SW S Y+A + ++ L FL
Sbjct: 277 GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQ----LNNRFLKF 332
Query: 239 -KNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKG 297
+ FK K D KEP+P GL + L +E N + N +GG MSKIS PFPHR G
Sbjct: 333 DERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSG 392
Query: 298 NIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG----LN 353
++Y+ W +QK T+ W+ ++Y++M P+ S PR YVN+ DLDLG N
Sbjct: 393 TRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGN 452
Query: 354 KKFNTSYTEAS-AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
K + E S +WG YF N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 453 KTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 297 bits (760), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 226/408 (55%), Gaps = 18/408 (4%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L + +D+ ++TAWV++G+T+GELYY I+E S+ GF AG CP+V
Sbjct: 103 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 162
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
M RKYGLAADNVVDA ++DA G ILDR+AMGED+FWAIR +G I AWK+KL
Sbjct: 163 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 222
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYN 179
+K + AT +L+KWQ VA++L+ED + V+ G ++ V +
Sbjct: 223 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTML 276
Query: 180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLF- 238
G + FPELGL D +E SW S Y+A + ++ L FL
Sbjct: 277 GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQ----LNNRFLKF 332
Query: 239 -KNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKG 297
+ FK K D KEP+P GL + L +E N + N +GG MSKIS PFPHR G
Sbjct: 333 DERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSG 392
Query: 298 NIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG----LN 353
++Y+ W +QK T+ W+ ++Y++M P+ S PR YVN+ DLDLG N
Sbjct: 393 TRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGN 452
Query: 354 KKFNTSYTEAS-AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
K + E S +WG YF N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 453 KTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/408 (39%), Positives = 225/408 (55%), Gaps = 18/408 (4%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L + +D+ ++TAWV++G+T+GELYY I+E S+ GF AG P+V
Sbjct: 97 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFG 156
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
M RKYGLAADNVVDA ++DA G ILDR+AMGED+FWAIR +G I AWK+KL
Sbjct: 157 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 216
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYN 179
+K + AT +L+KWQ VA++L+ED + V+ G ++ V +
Sbjct: 217 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTML 270
Query: 180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLF- 238
G + FPELGL D +E SW S Y+A + ++ L FL
Sbjct: 271 GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQ----LNNRFLKF 326
Query: 239 -KNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKG 297
+ FK K D KEP+P GL + L +E N + N +GG MSKIS PFPHR G
Sbjct: 327 DERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSG 386
Query: 298 NIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG----LN 353
++Y+ W +QK T+ W+ ++Y++M P+ S PR YVN+ DLDLG N
Sbjct: 387 TRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGN 446
Query: 354 KKFNTSYTEAS-AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
K + E S +WG YF N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 447 KTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/408 (39%), Positives = 225/408 (55%), Gaps = 18/408 (4%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L + +D+ ++TAWV++G+T+GELYY I+E S+ GF AG P+V
Sbjct: 97 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFG 156
Query: 61 XMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXX 120
M RKYGLAADNVVDA ++DA G ILDR+AMGED+FWAIR +G I AWK+KL
Sbjct: 157 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 216
Query: 121 XXXXXXXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYN 179
+K + AT +L+KWQ VA++L+ED + V+ G ++ V +
Sbjct: 217 PEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQVWLTML 270
Query: 180 ALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADFQNNTEPEILLEAEFLF- 238
G + FPELGL D +E SW S Y+A + ++ L FL
Sbjct: 271 GFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQ----LNNRFLKF 326
Query: 239 -KNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIPFPHRKG 297
+ FK K D KEP+P GL + L +E N + N +GG MSKIS PFPHR G
Sbjct: 327 DERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSG 386
Query: 298 NIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAYVNYRDLDLG----LN 353
++Y+ W +QK T+ W+ ++Y++M P+ S PR YVN+ DLDLG N
Sbjct: 387 TRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGN 446
Query: 354 KKFNTSYTEAS-AWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
K + E S +WG YF N+ RL+R K +DP+N+F H QSIPP+
Sbjct: 447 KTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 101/431 (23%), Positives = 177/431 (41%), Gaps = 49/431 (11%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
++++R + D + V+ GAT+GE Y + + AG+CP V
Sbjct: 106 MSQMRQVFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGYG 164
Query: 61 XMMRKYGLAADNV--VDARIVDARGRILDREAMG------EDLFWAIRXXXXXSFGIILA 112
+ R+ G+ AD++ V+ +VDA GR A +L+WA +FGI+
Sbjct: 165 PLSRRDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIV-- 222
Query: 113 WKVKLXXXXXXXXXXXXSKTLEQGATKIL---YKWQQVADKLDEDLFIRVIIKLA--NAG 167
+ S+ L + T L W A L E+ F R+I +
Sbjct: 223 --TRYWFRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQS 278
Query: 168 PKGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLYIADF----Q 223
T S +++F +S Q++ + GL + + ++ +V Q
Sbjct: 279 NSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQ 338
Query: 224 NNTEP--EILLEAEFLFKNY--FKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWN--- 276
+TEP L +F + K+K ++++P + L++ L + +W
Sbjct: 339 RSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQ---VWGEVS 395
Query: 277 --PYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYA 334
YGG ++ + E R +I K+ W D +A WIR +Y +
Sbjct: 396 LYSYGGKVNSVPETATATAQRD-SIIKVWMSATWMDPAHDDANL--AWIREIYREIFATT 452
Query: 335 SIFP------RAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPD 388
P ++NY D+DL +++++NTS W T Y+K N+ RL +VK + DP
Sbjct: 453 GGVPVPDDRTEGTFINYPDVDL-VDERWNTS---GVPWYTLYYKGNYPRLQKVKARWDPR 508
Query: 389 NIFRHEQSIPP 399
++FRH S+ P
Sbjct: 509 DVFRHALSVRP 519
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 176/448 (39%), Gaps = 74/448 (16%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
+++L ++ D V+AGAT+G +Y + + G CP V
Sbjct: 109 MSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT-LPGGACPDVGAGGHILGGGYG 167
Query: 61 XMMRKYGLAAD--NVVDARIVDARGR----ILDREAM--GEDLFWAIRXXXXXSFGIILA 112
+ R +G D + V+ +VDA G I RE DL+WA +FG+++
Sbjct: 168 PLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVR 227
Query: 113 WKVKLXXXXXXXXXXXXSKTLEQGATKIL-----YKWQQVADKLDEDLFIRVIIKLA--- 164
+ ++ + L + ++L + W+ LDE F R++
Sbjct: 228 YWLR---TAEADVPPEPGRLLPRPPAEVLLNTTVWPWE----GLDEAAFARLVRNHGRWF 280
Query: 165 --NAGP-----------------KGKRTVTTSYNALFLGDSERLLQVMHMWFPELGLT-R 204
N+GP G +TT +A +RL + +G+
Sbjct: 281 EQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPH 340
Query: 205 NDCIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKM 264
+D W+ S + P I + + + KA + + + + L+
Sbjct: 341 SDTRRLPWLHSTRW---------PGIAGDGDMTGRAKIKAA--YARRSFDDRQIGTLYTR 389
Query: 265 LLEED--NP--VMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHN 320
L D NP V+ YGG ++ + R +I KI Y+T W+D Q H
Sbjct: 390 LTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRD-SILKIVYVTTWEDPAQDPV--HV 446
Query: 321 GWIRRLY-DYMA-----PYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDN 374
WIR LY D A P AYVNY D+DL ++++NTS W Y+KD
Sbjct: 447 RWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLA-DEEWNTS---GVPWSELYYKDA 502
Query: 375 FNRLVRVKIKVDPDNIFRHEQS--IPPV 400
+ RL VK + DP N+FRH S +PP
Sbjct: 503 YPRLQAVKARWDPRNVFRHALSVRVPPA 530
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 278 YGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLY-DYMA----- 331
YGG ++ + P R I K+ Y+T W + N KH W+R+LY D A
Sbjct: 403 YGGKVNTVDPAATALPQRDA-ILKVNYITGW--ANPGNEAKHLTWVRKLYADVYAETGGV 459
Query: 332 PYASIFPRAAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIF 391
P + AY+NY D DL + NTS W Y+K N RL +VK DP N F
Sbjct: 460 PVPNDVSDGAYINYPDSDLA-DPGLNTS---GVPWHDLYYKGNHPRLRKVKAAYDPRNHF 515
Query: 392 RHEQSIPP 399
H SI P
Sbjct: 516 HHALSIRP 523
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/441 (21%), Positives = 163/441 (36%), Gaps = 70/441 (15%)
Query: 1 LAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXX 60
L L +I + V +GAT+ ++ + + N G C +V
Sbjct: 85 LHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGMGGLVAGGGYG 143
Query: 61 XMMRKYGLAADNV--VDARIVD-------ARGRILDREAMGEDLFWAIRXXXXXSFGIIL 111
+ R+ GL D++ V+ +VD R D +GE LFWA +FG++
Sbjct: 144 PLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNFGVVT 202
Query: 112 AWKVKLXXXXXXXXXXXXSKTLEQGATKILYKWQQVADKLDEDLFIRVIIKL-------- 163
A++ + K+++ W + DE F+ V+ +
Sbjct: 203 AYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMI----DETSFVTVMRRFFEWHERHS 258
Query: 164 ANAGPKGKRTVTTSYNALFLGDSERLLQVMHMWFPE-----------------LGLTRND 206
P+ T N + G + ++Q PE +G+ R
Sbjct: 259 EPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVVGIPRGG 318
Query: 207 CIETSWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLL 266
+ SW+ Y++ + + +KS + + + L L + L
Sbjct: 319 VM--SWLTGTRYMSQ----------ADCGDVMGARSASKSAYHRAAPTDEQLSVLHRHL- 365
Query: 267 EEDNP----VMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTLWKDGDQKNATKHNGW 322
D+P +++N YGG +++ + P R ++ K + + W+D + H GW
Sbjct: 366 HADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAWQDAELDEL--HLGW 422
Query: 323 IRRLYD-YMAPYASIFPR-----AAYVNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFN 376
+R LY+ + A + Y+NY D DL L+ N S W Y+KDN+
Sbjct: 423 LRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL-LDPARNRS---GEPWHHLYYKDNYA 478
Query: 377 RLVRVKIKVDPDNIFRHEQSI 397
RL K DP N F H SI
Sbjct: 479 RLRSAKRAWDPLNTFHHSMSI 499
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 95/415 (22%), Positives = 156/415 (37%), Gaps = 60/415 (14%)
Query: 9 VDINNKT--AWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKY 66
+ N+KT A V+ GA +G L +++K + G CP V +
Sbjct: 95 ISYNDKTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHMH 153
Query: 67 GLAADNVVDARIVDARGRILDREAM-GEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXX 125
GLA D+VV +V A GRI++ A DLFW I+ +FGI+ W KL
Sbjct: 154 GLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVW--KLATFPAPKV 210
Query: 126 XXXXSKTLE-QGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLG 184
TL + T L + V D V ++ + G L+ G
Sbjct: 211 LTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAG-----NPGIEGLYYG 265
Query: 185 DSERLLQVMHMWFPEL--GLTRNDCIETSWIRSVLYIADFQN----NTEP-EILLEAEFL 237
E+ L G N +WI SVL ++F + +P E
Sbjct: 266 TPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLT 325
Query: 238 FKNYFKAKSDFVKE------PIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEYEIP 291
K+ K D VK + V + W L+ + ++K++ E
Sbjct: 326 LKS---IKGDAVKNFVDYYFDVSNKVKDRFWFYQLD------VHGGKNSQVTKVTNAETA 376
Query: 292 FPHRKGNIFKIQYLTLWKDGDQKNATKH---NGWIRRLYDYMAPYASIFPRA---AYVNY 345
+PHR ++ IQ+ + + T +GW+ + P++ Y+NY
Sbjct: 377 YPHRD-KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSV-------TKALPKSDWGMYINY 428
Query: 346 RDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPPV 400
D +++ + T Y+ +N RL ++K K DP + F + Q++ PV
Sbjct: 429 ADPR--MDRDYATKV---------YYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/417 (23%), Positives = 152/417 (36%), Gaps = 72/417 (17%)
Query: 4 LRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAA--GLCPSVXXXXXXXXXXXXX 61
+ SI +D A + G G+L ++ G AA G+ P V
Sbjct: 91 MNSIHIDTAGSRARIGGGVISGDLVKEAAK----FGLAAVTGMHPKVGFCGLALNGGVGF 146
Query: 62 MMRKYGLAADNVVDARIVDARGRIL---DREAMGEDLFWAIRXXXXXSFGIILAWKVKLX 118
+ KYGLA+DN++ A +V A G ++ D E +LFWA+R +FG++ +V+L
Sbjct: 147 LTPKYGLASDNILGATLVTATGDVIYCSDDER--PELFWAVR-GAGPNFGVVTEVEVQLY 203
Query: 119 XXXXXXXXXXXS-----KTLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRT 173
+ L T +L ++AD + +F+ V N P +
Sbjct: 204 ELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVD---ENRAP----S 256
Query: 174 VTTSYNAL-FLGDSERLLQVMHMWFPELGLTRNDCIETSWIRSVLY----IADFQNNTEP 228
VT L L +ER + + LG T +D I V+ + F++
Sbjct: 257 VTVCVGHLGGLDIAERDIARLR----GLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMS- 311
Query: 229 EILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDNPVMIWNPYGGMMSKISEY 288
+ ++ E N A E++ L K + E P G K+
Sbjct: 312 NLWIDREIAMPNARFA----------EAIAGNLDKFVSE---------PASGGSVKLEIE 352
Query: 289 EIPF------PHRKGNIFKIQYLTLWKDGDQKNATKHNGWIRRLYDYMAPYASIFPRAAY 342
+PF P R + + L W G + K+ R L AA
Sbjct: 353 GMPFGNPKRTPARHRDAMGVLALAEWS-GAAPGSEKYPELAREL------------DAAL 399
Query: 343 VNYRDLDLGLNKKFNTSYTEASAWGTKYFKDNFNRLVRVKIKVDPDNIFRHEQSIPP 399
+ G N S A Y + ++RL VK + DP+N FRH +I P
Sbjct: 400 LRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|2P3X|A Chain A, Crystal Structure Of Grenache (Vitis Vinifera) Polyphenol
Oxidase
Length = 339
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 132 TLEQGATKILYKWQQVADKLDEDLFIRVIIKLANAGPKGKRTVTTSYNALFLGDSERLLQ 191
TLE I++KW +ADK ED+ T + +F G + +
Sbjct: 233 TLEHAPHNIVHKWTGLADKPSEDM---------------GNFYTAGRDPIFFGHHANVDR 277
Query: 192 VMHMWFPELGLTRNDCIETSWIRSVLYIAD 221
+ ++W G R D +T W+ + D
Sbjct: 278 MWNIWKTIGGKNRKDFTDTDWLDATFVFYD 307
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 8 EVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYG 67
E+D ++ T V+AGA + + + +E + + G S YG
Sbjct: 110 EIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYG 169
Query: 68 LAADNVVDARIVDARGRI------LDREAMG---EDLFWAIRXXXXXSFGIILAWKVKL 117
LA D + +V A GR+ L ++ G DLF + GII A +KL
Sbjct: 170 LARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAE----GTLGIITAATLKL 224
>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
Protein, Si-Clp
Length = 393
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 211 SWIRSVLYIADFQNNTEPEILLEAEFLFKNYFKAKSDFVKEPIPESVLEGLWKMLLEEDN 270
SW+R+ + + D ++ +ILL F +Y A S +EP V+ + L++
Sbjct: 276 SWVRACVQVLDPKSKWRSKILLGLNFYGMDY--ATSKDAREP----VVGARYIQTLKDHR 329
Query: 271 PVMIWNPYGGMMSKISEYEIPFPHRKGNIFKIQYLTL 307
P M+W+ S+ SE+ + + + Y TL
Sbjct: 330 PRMVWD------SQASEHFFEYKKSRSGRHVVFYPTL 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,627,583
Number of Sequences: 62578
Number of extensions: 460163
Number of successful extensions: 966
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 24
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)