Query 042620
Match_columns 392
No_of_seqs 122 out of 546
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:45:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1btq_A BAND 3 anion transport 99.1 2.7E-11 9.4E-16 76.7 1.7 26 7-32 1-26 (26)
2 1bts_A BAND 3 anion transport 99.0 2.6E-10 8.7E-15 72.3 2.5 26 38-63 1-26 (26)
3 1bzk_A Protein (BAND 3 anion t 98.9 2.5E-10 8.5E-15 80.8 1.5 28 6-33 16-43 (43)
4 1bnx_A Protein (BAND 3); human 98.4 8.9E-08 3.1E-12 64.4 2.0 22 12-33 13-34 (34)
5 3qe7_A Uracil permease; uracil 95.8 0.3 1E-05 49.5 17.1 254 12-328 25-287 (429)
6 2knc_A Integrin alpha-IIB; tra 21.5 87 0.003 22.7 3.5 22 259-280 8-29 (54)
7 2l8s_A Integrin alpha-1; trans 20.8 96 0.0033 22.5 3.6 21 260-280 6-26 (54)
8 2k1a_A Integrin alpha-IIB; sin 20.3 1.2E+02 0.0041 20.8 3.8 22 259-280 6-27 (42)
9 3pm8_A PFCDPK2, calcium-depend 17.7 51 0.0017 28.2 1.8 62 322-384 8-69 (197)
10 3qe7_A Uracil permease; uracil 14.2 8.8E+02 0.03 23.9 12.2 107 22-149 245-355 (429)
No 1
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=99.08 E-value=2.7e-11 Score=76.67 Aligned_cols=26 Identities=31% Similarity=0.659 Sum_probs=24.9
Q ss_pred cchhHHHHHHHhhhhhHHHhhccccc
Q 042620 7 GMMAPTTYIFFASALPVIAFGEQHAK 32 (392)
Q Consensus 7 ~~laa~~flyFa~l~PaIaFG~ll~~ 32 (392)
||+++++||||||++|+||||++|+|
T Consensus 1 q~laa~~FlyFa~l~paIaFGgLl~~ 26 (26)
T 1btq_A 1 XVLAAVIFIYFAALSPAITFGXXXXX 26 (26)
T ss_pred ChHHHHHHHHHHHHcchhccccccCC
Confidence 79999999999999999999999985
No 2
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=98.95 E-value=2.6e-10 Score=72.35 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=20.8
Q ss_pred cchhHHHHhhhhhHHHHHhhcCccee
Q 042620 38 LSTVETLSSTALCGIVHSVLGGQPLL 63 (392)
Q Consensus 38 igv~E~lls~ai~Giifslf~GQPL~ 63 (392)
+||+|+++|++++|++|++||||||+
T Consensus 1 ~gv~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 1 XGVSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTC----
T ss_pred CchhHHHHHHHHHHHHHHHHhcccCC
Confidence 68999999999999999999999995
No 3
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=98.91 E-value=2.5e-10 Score=80.82 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=26.8
Q ss_pred ccchhHHHHHHHhhhhhHHHhhcccccc
Q 042620 6 FGMMAPTTYIFFASALPVIAFGEQHAKD 33 (392)
Q Consensus 6 ~~~laa~~flyFa~l~PaIaFG~ll~~~ 33 (392)
+||+++++||||||++|+||||++|+++
T Consensus 16 ~~~laa~~fiyFa~l~PaIaFG~ll~~~ 43 (43)
T 1bzk_A 16 PQVLAAVIFIYFAALSPAITFGGLLGEK 43 (43)
T ss_dssp SHHHHHHHHHHHHTSTTTTTSSCCCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7999999999999999999999999875
No 4
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=98.40 E-value=8.9e-08 Score=64.35 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhHHHhhcccccc
Q 042620 12 TTYIFFASALPVIAFGEQHAKD 33 (392)
Q Consensus 12 ~~flyFa~l~PaIaFG~ll~~~ 33 (392)
++||||||++|+||||++|+++
T Consensus 13 ~~fiyFa~l~PaIaFg~ll~~~ 34 (34)
T 1bnx_A 13 VIFIYFAALSPAITFGGLLGEK 34 (34)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 8999999999999999999874
No 5
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=95.83 E-value=0.3 Score=49.50 Aligned_cols=254 Identities=16% Similarity=0.134 Sum_probs=131.9
Q ss_pred HHHHHHhhhhhHHHhhcccccccCCccchhHHHHhhhhhHHHHHhhcCcceee-eccCchhHHHHHHHHHhhcccccccc
Q 042620 12 TTYIFFASALPVIAFGEQHAKDTDGSLSTVETLSSTALCGIVHSVLGGQPLLI-LGVAEPTVLMYTYLYNFAKDREDLGQ 90 (392)
Q Consensus 12 ~~flyFa~l~PaIaFG~ll~~~T~~~igv~E~lls~ai~Giifslf~GQPL~I-lg~TGP~~vf~~~ly~~~~~~~~~~~ 90 (392)
.+-||-+.+++-+..| ++...+++.++++.+++++++|-|+-+ +|++.- |...+....+ .+
T Consensus 25 ~lam~~~~v~~PlilG----------l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfa---fi~~~~~i~~-~g---- 86 (429)
T 3qe7_A 25 LFAMFGATVLVPVLFH----------INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFA---FISPVLLLLP-LG---- 86 (429)
T ss_dssp HHHHHHHHHHHHHTTT----------SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGG---GHHHHHHHGG-GC----
T ss_pred HHHHHHHHHHhHHHhC----------CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHH---HHHHHHHHHh-cC----
Confidence 3445555555444443 234579999999999999999888875 777643 3223333332 22
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHh--hc--ccchhhhccchhhHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcccccc
Q 042620 91 KVYLAWAGWVCVWTSLMLFLLAIF--NA--CDLINRFTRIAGELFGMLIAVLFLQEAIKGMVSEFKIPKAEDSSSEKYQF 166 (392)
Q Consensus 91 ~~fl~~~~WvgiW~~~~~~i~a~~--~a--s~lv~y~TRFTeEiF~~lIs~iFi~eai~~l~~~f~~~~~~~~~~~~~~~ 166 (392)
++.. .=..+.++++.++++.+ .. -.+.|++..-.--.|-++|.+.-+--+++... .. .. +. +
T Consensus 87 ~~~~---~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~--~~-~~--~~---~--- 152 (429)
T 3qe7_A 87 YEVA---LGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG--LL-PA--EG---Q--- 152 (429)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHT--SS-CB--TT---B---
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhcc--cc-CC--CC---c---
Confidence 2222 12445666666666665 32 24666666533333444555444444544321 00 00 00 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccccccCcccchhhcchhhHHHHHHHHhhccccCc-cCCCCCCccccCCCCCC
Q 042620 167 HWPYTNGLLGIIFTSGLVCTAIKSRKTRSWWYGTGWFRSFIADYGVPLMVLVWSALSFSVPS-KVPSGVPRRLFSPLPWE 245 (392)
Q Consensus 167 ~~~~~~~l~sliL~~gtf~~a~~l~~fr~s~f~~~~vR~~isDfgv~iaV~~~t~~~y~~~~-~vp~~~~~~l~~~~~~~ 245 (392)
.. ..-.+.+++.++.+...+.+ +. |++++-+++.+++++.+.+.+.... +.+. +. ..|
T Consensus 153 -~~---~~~~~~la~~tl~iii~~~~-----~~----kg~~~~~aiLigivvg~~~a~~~G~~d~~~-v~-----~a~-- 211 (429)
T 3qe7_A 153 -TP---DSKTIIISITTLAVTVLGSV-----LF----RGFLAIIPILIGVLVGYALSFAMGIVDTTP-II-----NAH-- 211 (429)
T ss_dssp -CC---CHHHHHHHHHHHHHHHHHHH-----SS----STTTTTHHHHHHHHHHHHHHHHHHHTTSSH-HH-----HSC--
T ss_pred -cc---cHHHHHHHHHHHHHHHHHHH-----Hh----cccchhhHHHHHHHHHHHHHHHhcCCCccc-cc-----ccc--
Confidence 00 11234455555554443322 22 2333446899999998887765431 2211 00 011
Q ss_pred CCCCCCceEecCCC--CccHHHHHHHHHHHHHHHHHhhhchhhHHHHhhc-cccCCCCCCccchhhHHHHHHhhhhhhcC
Q 042620 246 SASLDHWSVIKDMG--KVPVAYIFAAFIPAVMIAGLYFFDHSVASQLAQQ-KEFNLKKPSAYHYDTFLLGFMTLACGLIG 322 (392)
Q Consensus 246 ~~~~r~W~v~~~~~--~~p~~~i~~A~~PA~ll~iL~FmD~nIts~ivn~-~e~kLkKg~gyHlDLlllgi~~~v~sllG 322 (392)
|+-.+++. ++.+ .++.+.+.+++.-++|+-=+..-+.+ -+.+..|.+..|=.+..-|+-|.++|++|
T Consensus 212 ------~~~lP~~~~P~f~~----~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfG 281 (429)
T 3qe7_A 212 ------WFALPTLYTPRFEW----FAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFG 281 (429)
T ss_dssp ------SSCCCCCCCCCCCH----HHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ------cccccCCCCCcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcC
Confidence 11111100 1222 23334444555666777533322222 12334456678889999999999999999
Q ss_pred CCCCCc
Q 042620 323 LPPSNG 328 (392)
Q Consensus 323 LPw~~g 328 (392)
-++..+
T Consensus 282 g~p~Tt 287 (429)
T 3qe7_A 282 STPNTT 287 (429)
T ss_dssp CCCEEE
T ss_pred CCCcch
Confidence 877543
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.50 E-value=87 Score=22.68 Aligned_cols=22 Identities=5% Similarity=0.430 Sum_probs=16.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHh
Q 042620 259 GKVPVAYIFAAFIPAVMIAGLY 280 (392)
Q Consensus 259 ~~~p~~~i~~A~~PA~ll~iL~ 280 (392)
..+|+|.+.+|.+-++++..|+
T Consensus 8 ~~vp~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 3588998888888777665544
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.84 E-value=96 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.6
Q ss_pred CccHHHHHHHHHHHHHHHHHh
Q 042620 260 KVPVAYIFAAFIPAVMIAGLY 280 (392)
Q Consensus 260 ~~p~~~i~~A~~PA~ll~iL~ 280 (392)
.+|+|.+.+|.+-|+++-.|+
T Consensus 6 ~vp~WiIi~svl~GLLLL~Li 26 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLL 26 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHH
Confidence 578888888888777665554
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.31 E-value=1.2e+02 Score=20.79 Aligned_cols=22 Identities=5% Similarity=0.430 Sum_probs=16.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHh
Q 042620 259 GKVPVAYIFAAFIPAVMIAGLY 280 (392)
Q Consensus 259 ~~~p~~~i~~A~~PA~ll~iL~ 280 (392)
..+|+|.+..|.+-++++-.|+
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li 27 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTIL 27 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 4589999988888877766554
No 9
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=17.69 E-value=51 Score=28.22 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=35.5
Q ss_pred CCCCCCcCCCCCChhhhhhhhHHHhhhccccccccceeeeecccchHHHHHHHHHHHHHhcCC
Q 042620 322 GLPPSNGVLLPQSPMHTKSLAVLKTQFMKKKMVESATESIKQKATDSEIYGKIQAVFIQMDNS 384 (392)
Q Consensus 322 GLPw~~ga~~p~S~~H~~sL~v~~~~~~~~~~~~~~~~~~eqr~s~~~~~~~~~~~~~~~~~~ 384 (392)
|=||..|.+-+.-|+.-..+..+++-....++.+.+.+++.+++|..++ ..+++.|..++..
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~l~~f~~~~~lk~~~l~~i~~~l~~~e~-~~l~~~F~~~D~d 69 (197)
T 3pm8_A 8 SSGRENLYFQGHVELSSTLLKNLKNFKKENELKKIALTIIAKHLCDVEI-NNLRNIFIALDVD 69 (197)
T ss_dssp ---------CCSCCCCTTHHHHHHHTTTSCHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHCTT
T ss_pred cchHhhhccCCCCCCCHHHHHHHHHHHHccHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHCCC
Confidence 5699999833777777776777666555455555566777777766554 5688888888753
No 10
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=14.25 E-value=8.8e+02 Score=23.89 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=66.0
Q ss_pred hHHHhhcccccccCCccchhHHHHhhhhhHHHHHhhcCcceeeeccCchhHHHHHH-HHHhhccccccccchhhhHHHHH
Q 042620 22 PVIAFGEQHAKDTDGSLSTVETLSSTALCGIVHSVLGGQPLLILGVAEPTVLMYTY-LYNFAKDREDLGQKVYLAWAGWV 100 (392)
Q Consensus 22 PaIaFG~ll~~~T~~~igv~E~lls~ai~Giifslf~GQPL~Ilg~TGP~~vf~~~-ly~~~~~~~~~~~~~fl~~~~Wv 100 (392)
-..+-+...+++.+..=.....+.+++++.++-++|+|-|.+--+ |.+ +-...+.+. =|+
T Consensus 245 ~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~--------en~g~i~~tg~~s-----------r~~ 305 (429)
T 3qe7_A 245 HLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG--------ENIGVMAITRVYS-----------TWV 305 (429)
T ss_dssp HHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECH--------HHHHHHHHHTBCC-----------HHH
T ss_pred HHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHH--------HhHHHHHhcCCcc-----------hHH
Confidence 334445444443333346889999999999999999999987532 111 112222211 168
Q ss_pred HHHHHHHHHHHHHhhcccchhhhccchhhHHHHHHHHHH---HHHHHHHhhh
Q 042620 101 CVWTSLMLFLLAIFNACDLINRFTRIAGELFGMLIAVLF---LQEAIKGMVS 149 (392)
Q Consensus 101 giW~~~~~~i~a~~~as~lv~y~TRFTeEiF~~lIs~iF---i~eai~~l~~ 149 (392)
+.|+++++++++.+. .+-..++.....+-+...-+.| ...++|.+.+
T Consensus 306 ~~~ag~~lillgl~p--k~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~ 355 (429)
T 3qe7_A 306 IGGAAIFAILLSCVG--KLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIE 355 (429)
T ss_dssp HHHHHHHHHHHTCCH--HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999988776553 3445567777888877433333 3456666644
Done!