Query 042620
Match_columns 392
No_of_seqs 122 out of 546
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 13:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042620.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042620hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 41.4 12 0.00089 24.3 3.4 25 92-116 19-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 40.0 14 0.001 23.8 3.5 25 92-116 18-42 (42)
3 d3b45a1 f.51.1.1 (A:91-270) Gl 10.0 2.2E+02 0.016 22.0 5.8 57 17-75 62-118 (180)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 9.2 3.1E+02 0.022 24.7 7.4 43 184-226 387-429 (472)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 8.4 92 0.0067 18.0 1.8 11 130-140 9-19 (30)
6 d1oe4a_ c.18.1.3 (A:) Single-s 7.4 24 0.0018 30.9 -1.7 62 317-380 66-127 (245)
7 d2hg6a1 d.364.1.1 (A:1-106) Hy 6.9 27 0.002 26.3 -1.4 13 121-133 27-39 (106)
8 d1kz1a_ c.16.1.1 (A:) Lumazine 6.4 26 0.0019 28.3 -1.9 37 298-334 79-118 (150)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 6.2 88 0.0064 24.9 1.5 55 17-73 64-118 (189)
10 d1cmca_ a.43.1.5 (A:) Met repr 6.1 1E+02 0.0076 22.6 1.6 18 46-63 54-71 (104)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=41.43 E-value=12 Score=24.35 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhc
Q 042620 92 VYLAWAGWVCVWTSLMLFLLAIFNA 116 (392)
Q Consensus 92 ~fl~~~~WvgiW~~~~~~i~a~~~a 116 (392)
.|+.|.-|.++-+.++++.+|++|+
T Consensus 19 gFi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999885
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=39.97 E-value=14 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhc
Q 042620 92 VYLAWAGWVCVWTSLMLFLLAIFNA 116 (392)
Q Consensus 92 ~fl~~~~WvgiW~~~~~~i~a~~~a 116 (392)
.|+.|.-|.++=..++++.+|++|+
T Consensus 18 gFik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999985
No 3
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=10.05 E-value=2.2e+02 Score=22.01 Aligned_cols=57 Identities=21% Similarity=0.160 Sum_probs=34.7
Q ss_pred HhhhhhHHHhhcccccccCCccchhHHHHhhhhhHHHHHhhcCcceeeeccCchhHHHH
Q 042620 17 FASALPVIAFGEQHAKDTDGSLSTVETLSSTALCGIVHSVLGGQPLLILGVAEPTVLMY 75 (392)
Q Consensus 17 Fa~l~PaIaFG~ll~~~T~~~igv~E~lls~ai~Giifslf~GQPL~Ilg~TGP~~vf~ 75 (392)
+.|+..-..||..++++-+..-=..=.+++..++|++..++... ...|.+|-+...-
T Consensus 62 ~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~ 118 (180)
T d3b45a1 62 LFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALM 118 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHH
Confidence 34555666788888877544222223345666667777777654 4678888654433
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=9.23 E-value=3.1e+02 Score=24.74 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=23.6
Q ss_pred HHHHHhhcccccccccCcccchhhcchhhHHHHHHHHhhcccc
Q 042620 184 VCTAIKSRKTRSWWYGTGWFRSFIADYGVPLMVLVWSALSFSV 226 (392)
Q Consensus 184 f~~a~~l~~fr~s~f~~~~vR~~isDfgv~iaV~~~t~~~y~~ 226 (392)
.+.++..|..|.+-+..+..|+-.--+++.+++++...+.|.+
T Consensus 387 ~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP 429 (472)
T d1wpga4 387 MCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVD 429 (472)
T ss_dssp HHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666665655554444455544555555555555555654
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.39 E-value=92 Score=17.99 Aligned_cols=11 Identities=36% Similarity=0.950 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 042620 130 LFGMLIAVLFL 140 (392)
Q Consensus 130 iF~~lIs~iFi 140 (392)
||+++|++.|.
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888887664
No 6
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=7.39 E-value=24 Score=30.94 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=35.9
Q ss_pred hhhhcCCCCCCcCCCCCChhhhhhhhHHHhhhccccccccceeeeecccchHHHHHHHHHHHHH
Q 042620 317 ACGLIGLPPSNGVLLPQSPMHTKSLAVLKTQFMKKKMVESATESIKQKATDSEIYGKIQAVFIQ 380 (392)
Q Consensus 317 v~sllGLPw~~ga~~p~S~~H~~sL~v~~~~~~~~~~~~~~~~~~eqr~s~~~~~~~~~~~~~~ 380 (392)
.++.-|+|+-... .++..++.......-....+++ +-.-..|-++.+|+.++|+.++|.|-.
T Consensus 66 Gm~qTGVPFgd~~-~vr~~l~I~~~v~~P~~~HPKR-pi~Gl~~~r~EvSg~rlW~l~~~~~g~ 127 (245)
T d1oe4a_ 66 GMAQTGVPFGEVN-HVRDWLQIEGPVSKPEVEHPKR-RIRGFECPQSEVSGARFWSLFKSLCGQ 127 (245)
T ss_dssp THHHHSSTTCCHH-HHHHTTCCCCCCCCCSSCCTTS-CCCGGGCCSCCHHHHHHHHHHHHHHSS
T ss_pred cCcccCcCcCCHH-HHHHHhcCCCccCCCcccCCCC-ccccccccccccHHHHHHHHHHHHcCC
Confidence 4567899996555 5555555444211111111111 111344677899999999999998853
No 7
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.93 E-value=27 Score=26.28 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=11.1
Q ss_pred hhhccchhhHHHH
Q 042620 121 NRFTRIAGELFGM 133 (392)
Q Consensus 121 ~y~TRFTeEiF~~ 133 (392)
+|+-||+|+.|+.
T Consensus 27 ~~ivRFSEDsFGm 39 (106)
T d2hg6a1 27 RYIVRFSEDSFGM 39 (106)
T ss_dssp EEEEESCGGGCSS
T ss_pred eEEEEecccccCC
Confidence 6889999999885
No 8
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.36 E-value=26 Score=28.31 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=29.3
Q ss_pred CCCCCccchhhHHHHHHhhhhhh---cCCCCCCcCCCCCC
Q 042620 298 LKKPSAYHYDTFLLGFMTLACGL---IGLPPSNGVLLPQS 334 (392)
Q Consensus 298 LkKg~gyHlDLlllgi~~~v~sl---lGLPw~~ga~~p~S 334 (392)
.-||.-+|+|+..=.+..++.-+ .++|-.+|.+++++
T Consensus 79 VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GILt~~n 118 (150)
T d1kz1a_ 79 LIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLN 118 (150)
T ss_dssp EECCSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESS
T ss_pred EecCcchHHHHHHHHHHHHHHHHhccCCccEEEEECCCCC
Confidence 46999999999998888776544 39999999966543
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=6.24 E-value=88 Score=24.94 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=36.6
Q ss_pred HhhhhhHHHhhcccccccCCccchhHHHHhhhhhHHHHHhhcCcceeeeccCchhHH
Q 042620 17 FASALPVIAFGEQHAKDTDGSLSTVETLSSTALCGIVHSVLGGQPLLILGVAEPTVL 73 (392)
Q Consensus 17 Fa~l~PaIaFG~ll~~~T~~~igv~E~lls~ai~Giifslf~GQPL~Ilg~TGP~~v 73 (392)
+.|+..-..||...++..+..-=..=.+++..+++++++++.++| .+|.+|-+.-
T Consensus 64 ~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~--~vGaSG~v~g 118 (189)
T d2nr9a1 64 LFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYA 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC--cccchHHHHH
Confidence 345566677787777665443333344557888888888887766 5799987543
No 10
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=6.12 E-value=1e+02 Score=22.64 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=13.6
Q ss_pred hhhhhHHHHHhhcCccee
Q 042620 46 STALCGIVHSVLGGQPLL 63 (392)
Q Consensus 46 s~ai~Giifslf~GQPL~ 63 (392)
|.-+|--+-.-|.||||-
T Consensus 54 SELLCEAFLHAfTGQPLP 71 (104)
T d1cmca_ 54 SELLCEAFLHAFTGQPLP 71 (104)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 445677777889999984
Done!