BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042621
         (291 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
           Features Of The Mammalian Exocyst
          Length = 571

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 141/296 (47%), Gaps = 25/296 (8%)

Query: 2   ESVFKGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDATKTAVL--DGTVHPLTSY 59
           + V +G A +  +    GL   +     +   DF + ++ D  K   +  DGTVH LTS 
Sbjct: 283 DQVLQGTAAS-TKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSN 341

Query: 60  VINYVKFLFDYQSTLKQLFQEFENGTE--------SDSQLASVTMRIMQALQTNLDGKSK 111
            I +++ L D+Q T   +    E  +         S   L++   +++  LQ NL  KSK
Sbjct: 342 AILFLQQLLDFQETAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSK 401

Query: 112 QYKDPALTHLFLMNNIHYMVRSVRSC-----LACSRDDWVQRHRRIVQQHANQYKRTAWA 166
            Y+DPAL+ +FL NN +Y+++S+        +A ++    + +R  ++Q    Y+R+ W 
Sbjct: 402 VYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTYQRS-WL 460

Query: 167 KILQCXXXXXXXXXXXXXXXXXXXXXXSGVSRALIKDRFKVFNIQFEELHQKQSQWTVPD 226
           K+                             R +IK+RFK FN   EEL + Q  W +PD
Sbjct: 461 KVTDYIAEKNLPVFQPGVKLRDK-------ERQMIKERFKGFNDGLEELCKIQKVWAIPD 513

Query: 227 TELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGEFFE 282
           TE R+ +R A  +++   Y +F+ R+G  V   KNP+KYI+Y  E +  M+   F+
Sbjct: 514 TEQRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFD 568


>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
           Terminal Domains Reveal A Common Motif
          Length = 564

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 201 IKDRFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGK 260
           IK++F+ FN  FE+L  K  Q+ + D  L+ +L+  +  +++P Y  F  R+    ++ K
Sbjct: 486 IKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYK---DSFK 542

Query: 261 NPQKYIRYSAEDLERMLGEF 280
           NP+K+I+Y+ ++L  +L + 
Sbjct: 543 NPRKHIKYTPDELTTVLNQL 562


>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
           Angrstrom Resolution
          Length = 563

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 201 IKDRFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGK 260
           IK++F+ FN  FE+L  K  Q+ + D  L+ +L+  +  +++P Y  F  R+    ++ K
Sbjct: 485 IKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYK---DSFK 541

Query: 261 NPQKYIRYSAEDLERMLGEF 280
           NP+K+I+Y+ ++L  +L + 
Sbjct: 542 NPRKHIKYTPDELTTVLNQL 561


>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
           Exo70p
 pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
           Exo70p
 pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
           Exo70p
 pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
           Exo70p
          Length = 566

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 201 IKDRFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGK 260
           IK++F+ FN  FE+L  K  Q+ + D  L+ +L+  +  ++ P Y  F  R+    ++ K
Sbjct: 488 IKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPXYERFYSRYK---DSFK 544

Query: 261 NPQKYIRYSAEDLERMLGEF 280
           NP+K+I+Y+ ++L  +L + 
Sbjct: 545 NPRKHIKYTPDELTTVLNQL 564


>pdb|3EVN|A Chain A, Crystal Structure Of Putative Oxidoreductase From
           Streptococcus Agalactiae 2603vR
          Length = 329

 Score = 30.8 bits (68), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 51  GTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTESDSQ 90
           GTVH +  Y ++Y+++LFD   T       F  G +SDSQ
Sbjct: 174 GTVHFMAPYALSYLQYLFDATITHASGTATFPKG-QSDSQ 212


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,521,475
Number of Sequences: 62578
Number of extensions: 269250
Number of successful extensions: 708
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 16
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)