Query 042621
Match_columns 291
No_of_seqs 112 out of 459
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 1.5E-69 3.1E-74 536.5 30.2 274 1-288 334-619 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 1.8E-67 3.9E-72 498.3 20.6 267 1-280 86-371 (371)
3 PF06419 COG6: Conserved oligo 98.2 0.0006 1.3E-08 69.1 22.9 244 17-277 357-618 (618)
4 KOG3758 Uncharacterized conser 96.9 0.12 2.5E-06 51.6 18.7 235 17-277 390-651 (655)
5 PF09763 Sec3_C: Exocyst compl 96.9 0.055 1.2E-06 55.8 17.4 226 14-249 436-692 (701)
6 PF04129 Vps52: Vps52 / Sac2 f 95.9 0.15 3.2E-06 50.7 13.0 91 36-138 395-486 (508)
7 KOG1961 Vacuolar sorting prote 95.5 0.42 9.2E-06 47.6 14.0 78 49-137 474-551 (683)
8 KOG2148 Exocyst protein Sec3 [ 89.4 6.3 0.00014 40.1 12.1 221 15-251 603-837 (867)
9 PF15264 TSSC4: Tumour suppres 63.6 2.1 4.5E-05 34.0 -0.3 21 254-274 53-73 (115)
10 PF08069 Ribosomal_S13_N: Ribo 60.2 8.2 0.00018 27.0 2.2 25 257-281 17-41 (60)
11 cd08788 CARD_NOD2_2_CARD15 Cas 53.0 38 0.00083 25.1 4.8 41 4-44 28-75 (81)
12 KOG1916 Nuclear protein, conta 47.8 1.2E+02 0.0026 32.6 9.1 48 199-249 1015-1064(1283)
13 PHA01746 hypothetical protein 44.3 7.9 0.00017 30.3 0.1 20 246-271 77-96 (131)
14 PRK11352 regulator protein Frm 40.5 99 0.0022 23.3 5.6 59 6-64 31-90 (91)
15 KOG1733 Mitochondrial import i 37.9 32 0.00069 26.1 2.5 25 148-173 61-85 (97)
16 PRK08561 rps15p 30S ribosomal 33.7 49 0.0011 27.5 3.2 27 257-283 17-43 (151)
17 PF08158 NUC130_3NT: NUC130/3N 32.8 1.5E+02 0.0033 19.9 5.0 33 204-238 12-44 (52)
18 PF03682 UPF0158: Uncharacteri 28.5 45 0.00098 28.0 2.3 51 224-279 82-132 (163)
19 PF13605 DUF4141: Domain of un 25.6 67 0.0014 22.0 2.2 25 217-241 17-42 (55)
20 TIGR02553 SipD_IpaD_SspD type 25.0 2.5E+02 0.0054 26.2 6.5 33 141-175 117-149 (308)
21 KOG2047 mRNA splicing factor [ 24.8 21 0.00046 36.5 -0.4 43 239-281 138-180 (835)
22 COG1937 Uncharacterized protei 24.5 2.3E+02 0.005 21.4 5.2 34 6-39 31-64 (89)
23 PF08741 YwhD: YwhD family; I 23.9 70 0.0015 26.7 2.5 32 193-233 131-162 (163)
24 PF10020 DUF2262: Uncharacteri 22.3 3E+02 0.0065 22.3 6.1 60 209-278 49-108 (150)
25 KOG0464 Elongation factor G [T 22.1 1.7E+02 0.0037 28.8 5.0 71 206-281 197-287 (753)
26 KOG3151 26S proteasome regulat 21.7 6E+02 0.013 22.9 9.0 72 26-107 19-91 (260)
27 KOG2203 GTP-binding protein [G 21.5 2.8E+02 0.006 28.4 6.5 81 196-287 402-482 (772)
28 KOG3821 Heparin sulfate cell s 21.3 73 0.0016 32.0 2.5 73 196-282 95-168 (563)
29 PF04780 DUF629: Protein of un 21.3 84 0.0018 31.0 2.9 70 199-276 120-189 (466)
30 KOG3960 Myogenic helix-loop-he 20.8 1.5E+02 0.0032 26.9 4.0 14 202-215 127-140 (284)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-69 Score=536.51 Aligned_cols=274 Identities=49% Similarity=0.832 Sum_probs=255.7
Q ss_pred CccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhh
Q 042621 1 IESVFKGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQE 80 (291)
Q Consensus 1 ~~~lf~~~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I~~~~~~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~ 80 (291)
|+.||.++.|+++|.++..++++|+++++.+|+||...|+.++++.+++||+|||+|+||||||+.|++|+++|.++|..
T Consensus 334 ie~lF~~~~~s~vr~~~~~~~~rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~~L~dy~~tL~~il~~ 413 (623)
T KOG2344|consen 334 IERLFSDASCSEVRSQALSLLKRLGEGVRSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLNFLADYKDTLEQLLME 413 (623)
T ss_pred HHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc----------CCCCCCchHHHHHHHHHHHHHHHHHhhhccCCCcchhhHhhhhhhhHHHhhccccccc--cchhHHHH
Q 042621 81 FE----------NGTESDSQLASVTMRIMQALQTNLDGKSKQYKDPALTHLFLMNNIHYMVRSVRSCLAC--SRDDWVQR 148 (291)
Q Consensus 81 ~~----------~~~~~~~~l~~~v~~ii~~L~~~Le~ksk~y~d~~l~~iFLlNN~~yI~~~l~~s~l~--lg~~~~~~ 148 (291)
+. ......++++.++++||..|+.||+.||+.|+|++|++||||||.+||+++++.++|. ||++|+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~aL~~lFlmNN~~yiv~kvkss~L~~llGd~wl~k 493 (623)
T KOG2344|consen 414 DPVDTSLPKSESEDESSNSLLAVHIARIILALECNLDTKSKLYKDPALSYLFLMNNLHYIVQKVKSSELRLLLGDDWLRK 493 (623)
T ss_pred cccccccCcccccccccccHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHHHhhHHHHHHHHhcchHHHHhchHHHHH
Confidence 41 1113347899999999999999999999999999999999999999999999988888 99999999
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHhcCcceecCHH
Q 042621 149 HRRIVQQHANQYKRTAWAKILQCLSVQGLTSSGGGGSVATDGGNSSGVSRALIKDRFKVFNIQFEELHQKQSQWTVPDTE 228 (291)
Q Consensus 149 ~~~~v~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~lK~~f~~Fn~~Fee~~~~q~~w~V~D~~ 228 (291)
|..++++|...|++++|++|+++|.+.+. .. | ++.+|+.+|++|++||++|||+|++|++|+||||+
T Consensus 494 h~~~~~qy~~~Y~r~sW~~vl~~L~~~~s-~~---~---------~~~~~~~~Kerfk~FN~~FeEv~k~Qs~wvV~D~~ 560 (623)
T KOG2344|consen 494 HEEKLRQYATSYERESWGKVLSLLTDEGS-SS---G---------GKKSKEVLKERFKLFNEQFEEVYKKQSQWVVPDPK 560 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc---c---------cccCHHHHHHHHHHHHHHHHHHHHhhCceecccHH
Confidence 99999999999999999999999999872 11 1 13689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHHhhcCCCCCCC
Q 042621 229 LRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGEFFEGKTLNE 288 (291)
Q Consensus 229 LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~LFeg~~~~~ 288 (291)
||+.||.+|.++|+|+|++||++|+..+ .+++|+|||||||||||++|.+||+|++.+.
T Consensus 561 Lr~eLk~si~~~v~P~Yr~F~~r~~~~~-~~k~~~kyikYtpedlE~~L~dLF~g~~~~~ 619 (623)
T KOG2344|consen 561 LREELKISISEKVVPAYRSFYGRYRNSV-SGKNPEKYIKYTPEDLENYLSDLFEGSPSSP 619 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcccccCHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999877 5999999999999999999999999998443
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=1.8e-67 Score=498.33 Aligned_cols=267 Identities=43% Similarity=0.770 Sum_probs=232.8
Q ss_pred CccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCCCCcccchHHHHHHHHHHHHhcHHHHHHHH
Q 042621 1 IESVFKGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEK--DATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLF 78 (291)
Q Consensus 1 ~~~lf~~~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I~~--~~~~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL 78 (291)
++.+|.|+++++++.++.+++++|+++|+++|.+|.+.|+. ++.+.+|.||+|||+|++||+||+.|++|+++++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~~l~~il 165 (371)
T PF03081_consen 86 LDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRDTLESIL 165 (371)
T ss_dssp CHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999 7778889999999999999999999999999999999
Q ss_pred hhccCC---------------CCCCchHHHHHHHHHHHHHHHHHhhhccCCCcchhhHhhhhhhhHHHhhccccccc--c
Q 042621 79 QEFENG---------------TESDSQLASVTMRIMQALQTNLDGKSKQYKDPALTHLFLMNNIHYMVRSVRSCLAC--S 141 (291)
Q Consensus 79 ~~~~~~---------------~~~~~~l~~~v~~ii~~L~~~Le~ksk~y~d~~l~~iFLlNN~~yI~~~l~~s~l~--l 141 (291)
...+++ ++..++++.||.++|++|+.+||+||+.|+|++|++||||||+|||.+.+++|++. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~~~s~l~~~l 245 (371)
T PF03081_consen 166 QSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKLKRSELKDLL 245 (371)
T ss_dssp CTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCCCTSHHHHCC
T ss_pred HhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhhcchhhhc
Confidence 873321 12457899999999999999999999999999999999999999999999999887 9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHhcCc
Q 042621 142 RDDWVQRHRRIVQQHANQYKRTAWAKILQCLSVQGLTSSGGGGSVATDGGNSSGVSRALIKDRFKVFNIQFEELHQKQSQ 221 (291)
Q Consensus 142 g~~~~~~~~~~v~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~lK~~f~~Fn~~Fee~~~~q~~ 221 (291)
|++|.+++...++++++.|+++||+||+++|.++.... ++ ++++++|+.+|++|++||++|||+|+.|+.
T Consensus 246 g~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~---~~-------~~~~~~~~~~ke~f~~Fn~~fee~~~~q~~ 315 (371)
T PF03081_consen 246 GDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSS---GG-------KLSSKERELLKEKFKKFNSAFEEIYKAQKT 315 (371)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T----S-------SS-HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc---cC-------CCCCccHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999988999999999862111 12 245789999999999999999999999999
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHHhh
Q 042621 222 WTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGEF 280 (291)
Q Consensus 222 w~V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~L 280 (291)
|+||||+||++||++|.+.|+|+|++||++|+.. .+ ||+|||||||++||++|++|
T Consensus 316 ~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~-~~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 316 WKVPDPELREELRREIKEKVVPAYRRFYERYRNS-QF--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp ---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-SS--SHCCC-SS-HHHHHHHHHTC
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc--CCCCCCccCHHHHHHHHHcC
Confidence 9999999999999999999999999999999986 55 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=98.16 E-value=0.0006 Score=69.15 Aligned_cols=244 Identities=11% Similarity=0.164 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhhccCCCCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCchHH
Q 042621 17 ALGLTKRLAQTAQETFGD----FEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTESDSQLA 92 (291)
Q Consensus 17 ~~~ll~~l~~~~~~~l~e----f~~~I~~~~~~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~~~~~~~~~~~l~ 92 (291)
+...+..|.+.|.+.|.. ....+...+...+|.|=...+-....++-|+.+++- -+.-+... ++......+.
T Consensus 357 L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~d~l~~L~~il~~---~~~s~~~~-~~~~~~~~~~ 432 (618)
T PF06419_consen 357 LIETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLIDFLSLLREILDV---YDSSLSPD-DDRENDNDFK 432 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHH---hhcccCCc-cchhhhhHHH
Confidence 445555566666555444 444555552334555655555555555555554432 11111111 0111126788
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcchhhHhhhhhhhHHHhhccccccccchhHHHHHHHHHHHHH--------HHHHH-h
Q 042621 93 SVTMRIMQALQTNLDGKSKQYKDPALTHLFLMNNIHYMVRSVRSCLACSRDDWVQRHRRIVQQHA--------NQYKR-T 163 (291)
Q Consensus 93 ~~v~~ii~~L~~~Le~ksk~y~d~~l~~iFLlNN~~yI~~~l~~s~l~lg~~~~~~~~~~v~~~~--------~~Y~~-~ 163 (291)
..+..+|+-+....+..|....++.-+.||++|...+|...+..-+. ...+.......++.+. ...++ .
T Consensus 433 ~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~--~~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~s 510 (618)
T PF06419_consen 433 PILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEF--TSERVEELQDQIDAHVDTLVEEQASFLLERS 510 (618)
T ss_pred HHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 88999999999999998888887777899999999999988865332 2344444444444433 33332 2
Q ss_pred cHHHHHHhhc---ccCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHH-HHhcC-cceecCHHHHHHHHHHHH
Q 042621 164 AWAKILQCLS---VQGLTSSGGGGSVATDGGNSSGVSRALIKDRFKVFNIQFEEL-HQKQS-QWTVPDTELRESLRLAVA 238 (291)
Q Consensus 164 sW~~v~~~L~---~~~~~~~~~~~~~~~~~~~~~~~~r~~lK~~f~~Fn~~Fee~-~~~q~-~w~V~D~~LR~~Lr~~i~ 238 (291)
.-+++...+. .+... .+|++.. ...+...++.-...|+.-+--. .-.+. .-.+.+|.+|+.+++...
T Consensus 511 GL~~~~~~l~~i~~~~~~----~~pls~~----p~~~~~~l~~a~~kld~fL~sa~~d~~~~L~~L~Sp~l~~~I~~~a~ 582 (618)
T PF06419_consen 511 GLGDLYNALNMIFFDYDM----YGPLSEN----PGMDPDSLSNALQKLDDFLPSALTDAQPNLFKLQSPKLRDDIRERAF 582 (618)
T ss_pred CcHHHHHHHHhhccCCcc----cCCcccC----ccCCHHHHHHHHHHHHHHHcccchhhhHHHHHhcCHHHHHHHHHHHH
Confidence 2344555554 11111 1333211 1234444544444444433221 11222 345889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHH
Q 042621 239 EVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERML 277 (291)
Q Consensus 239 ~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l 277 (291)
..++-+|..+++...+. ..+-+.-+..||++|..+|
T Consensus 583 ~~f~~~Y~~v~~~v~d~---~n~y~sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 583 ERFCKAYEKVYEAVMDP---DNGYESLFPRTPEEIRTLL 618 (618)
T ss_pred HHHHHHHHHHHHHHhCh---hcccccccCCCHHHHhhcC
Confidence 99999999999998763 1111134679999998764
No 4
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.12 Score=51.57 Aligned_cols=235 Identities=14% Similarity=0.221 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhccCC--CCCCCCcccchHHHHHHHHHHHHh-cHHHHHHHHhhccCCCCCCchHH
Q 042621 17 ALGLTKRLAQTAQETFGDFEE-AVEKDATK--TAVLDGTVHPLTSYVINYVKFLFD-YQSTLKQLFQEFENGTESDSQLA 92 (291)
Q Consensus 17 ~~~ll~~l~~~~~~~l~ef~~-~I~~~~~~--~~~~dg~VH~lT~~~m~yl~~L~~-~~~~l~~iL~~~~~~~~~~~~l~ 92 (291)
+...++.|.++++.++-...+ .+++-..+ .+|.|=...|-.+..|+-+.-+.+ |..++..... ....+.
T Consensus 390 l~~~l~~L~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLlPpp~v~~~l~ll~ei~~~~~a~~~~~d~-------~~~df~ 462 (655)
T KOG3758|consen 390 LLNTLKELEDISKQRFIGYLEDHVKKLMRKELSPPSDLLPPPAVREYLNLLVEIFEIYEASHTAEDG-------EQLDFK 462 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHHHhhhhhccccc-------cccchH
Confidence 444556666666665544433 23221111 233355555555555555555544 4333322111 112344
Q ss_pred HHHHHHHHHHHHHHHhhhc-cCCCcchh--hHhhhhhhhHHHhhccccccccchhHHHHHHHHHHHHHHHHHH-------
Q 042621 93 SVTMRIMQALQTNLDGKSK-QYKDPALT--HLFLMNNIHYMVRSVRSCLACSRDDWVQRHRRIVQQHANQYKR------- 162 (291)
Q Consensus 93 ~~v~~ii~~L~~~Le~ksk-~y~d~~l~--~iFLlNN~~yI~~~l~~s~l~lg~~~~~~~~~~v~~~~~~Y~~------- 162 (291)
..+..+++-|..+-+.-+. ..+. +-. -+||+|-.+.|-..+.+-+ ...++-+.++..+..|.+
T Consensus 463 ~l~s~vldpilq~c~~sae~~lp~-~d~~~~if~iNcL~~iks~l~~~e------~~~~~~e~lq~~ie~~~d~L~t~q~ 535 (655)
T KOG3758|consen 463 LLLSCVLDPILQMCQKSAEAHLPT-SDKGSLIFMINCLDLIKSRLARYE------FLDERVEMLQAKIEAYLDTLVTLQV 535 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-cccccceehhhhHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433331 1221 222 5999999999987775432 222222223323333332
Q ss_pred ------hcHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHhcCccee------cCHHHH
Q 042621 163 ------TAWAKILQCLSVQGLTSSGGGGSVATDGGNSSGVSRALIKDRFKVFNIQFEELHQKQSQWTV------PDTELR 230 (291)
Q Consensus 163 ------~sW~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~lK~~f~~Fn~~Fee~~~~q~~w~V------~D~~LR 230 (291)
..-+++...+...++.. +.++. ..+-+-..++ .+-..|+...+.-..+.+ ..|.+|
T Consensus 536 s~ll~~~GLs~~~q~~~~~~p~~----~~ls~----~~~l~s~~~~----~~i~~fd~~l~~~~~~~lpq~q~l~sp~~r 603 (655)
T KOG3758|consen 536 SFLLENTGLSDLYQKFNMITPED----SVLSL----DPDLESALLD----EAIVKFDMFLHAPLNLTLPQLQQLTSPMVR 603 (655)
T ss_pred HHHHHHcChHHHHHHHHhcCcch----hhhhc----cccccHHHHH----HHHHHHHHHhcccccccchHHHHHcCHHHH
Confidence 12233333333222211 10110 1111222233 333333333333334443 468899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCCCC-CcccccCHHHHHHHH
Q 042621 231 ESLRLAVAEVLLPAYRSFVKRFGPLVENGKNP-QKYIRYSAEDLERML 277 (291)
Q Consensus 231 ~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~-~Kyikytpe~le~~l 277 (291)
+++++.....++-+|..+|++..+....-+.| +--++++|++++..+
T Consensus 604 ~~i~kr~~~~~~~aY~~i~~al~~~~ngy~dPve~ll~~~~dq~~tll 651 (655)
T KOG3758|consen 604 DEICKRSAKKFVLAYEIIYKALINPYNGYKDPVESLLHFSPDQVDTLL 651 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCCCChHHHHhcCCHHHhcccc
Confidence 99999999999999999999998764444667 556788999887665
No 5
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=96.90 E-value=0.055 Score=55.81 Aligned_cols=226 Identities=14% Similarity=0.237 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhccC-CCCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCchH
Q 042621 14 RESALGLTKRLAQTAQETFGDFEE-AVEKDAT-KTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTESDSQL 91 (291)
Q Consensus 14 ~~~~~~ll~~l~~~~~~~l~ef~~-~I~~~~~-~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~~~~~~~~~~~l 91 (291)
.+.+..++.++...+++.|..|.+ .|+.-.. +..... ...|+.|++.+..|-..++.++............+
T Consensus 436 ~~fl~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k~~~k~------r~GVl~~i~~fp~f~~~~E~~~~~~~~~~~~r~~v 509 (701)
T PF09763_consen 436 QSFLSNLLQKLQVRLKRLFDKFVDEQIKSIEETKVSKKK------RKGVLPFIKKFPEFVKRVESMFSGAERAREDRSLV 509 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC------CCccchHHHHHHHHHHHHHHHHccccccchHHHHH
Confidence 346788889999999999999986 3432211 111111 11456677777788888888887643312223458
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC-----------CcchhhHhhhhhhhHHHhhcccccc-ccchhHHHHHHHHHHHHHHH
Q 042621 92 ASVTMRIMQALQTNLDGKSKQYK-----------DPALTHLFLMNNIHYMVRSVRSCLA-CSRDDWVQRHRRIVQQHANQ 159 (291)
Q Consensus 92 ~~~v~~ii~~L~~~Le~ksk~y~-----------d~~l~~iFLlNN~~yI~~~l~~s~l-~lg~~~~~~~~~~v~~~~~~ 159 (291)
.....+++.++...|+..++.-. ...-.+|.++=|+||+...+..-.. ..=+.|.++.....+.+...
T Consensus 510 d~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l~~~~~~A~~~~~~~~~~ 589 (701)
T PF09763_consen 510 DKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVLEEFRKEAKQIYDEHLEA 589 (701)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999986543 2466899999999999999976555 32256666655555555555
Q ss_pred HHH----hcHHHHHHhhcccCCCC-CCCCCCCCCCCCCCCccchHHHHHHHH-----HHHHHHHHHHHh-cCcc--ee--
Q 042621 160 YKR----TAWAKILQCLSVQGLTS-SGGGGSVATDGGNSSGVSRALIKDRFK-----VFNIQFEELHQK-QSQW--TV-- 224 (291)
Q Consensus 160 Y~~----~sW~~v~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~r~~lK~~f~-----~Fn~~Fee~~~~-q~~w--~V-- 224 (291)
|++ -.+++++..+....... ..++..+ .....-+|+.+|.-++ ..-...+.+|+. ++.+ ..
T Consensus 590 Y~~~~l~r~~~kL~~F~~gve~l~~~~~~~ei----~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~krveKHf~~~~~~ 665 (701)
T PF09763_consen 590 YVTFLLRRPFGKLLDFFEGVEALLQTVSPEEI----SYQAAYSKQELKKVLKSYPSKEVRKGIEALYKRVEKHFSRDADD 665 (701)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhccCchhc----ccchhccHHHHHHHHHhCChHHHHHHHHHHHHHHHHHcCCcccc
Confidence 554 45666666654321111 0001111 1112234555555444 456667888876 4444 22
Q ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHH
Q 042621 225 --PDTELRESLRLAVAEVLLPAYRSFV 249 (291)
Q Consensus 225 --~D~~LR~~Lr~~i~~~V~p~Y~~f~ 249 (291)
.+..|=+.+=+++.+..+.-|.+|.
T Consensus 666 ~~~~~~Ll~~vW~~~q~~~i~~~~~l~ 692 (701)
T PF09763_consen 666 PSFEEDLLQVVWSAMQEEFIRQYERLE 692 (701)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555555444444443
No 6
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=95.88 E-value=0.15 Score=50.75 Aligned_cols=91 Identities=24% Similarity=0.339 Sum_probs=61.7
Q ss_pred HHHHhhccC-CCCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHhhhccCC
Q 042621 36 EEAVEKDAT-KTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTESDSQLASVTMRIMQALQTNLDGKSKQYK 114 (291)
Q Consensus 36 ~~~I~~~~~-~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~~~~~~~~~~~l~~~v~~ii~~L~~~Le~ksk~y~ 114 (291)
.++|+.-.. ...+.+.+.|.+|+---.|+..|. .+-... ....+...+.++-..+..-|..-|+.++
T Consensus 395 ieSlk~~~~~~~~~~~~~PH~itrRyaef~~sll-------~L~~~~-----~~~~~~~~l~~L~~~~~~ll~~~s~~~~ 462 (508)
T PF04129_consen 395 IESLKKADPKKLGSIDTRPHYITRRYAEFLSSLL-------KLSSEH-----PDEQLEPSLNRLRREVEDLLTRLSKEFK 462 (508)
T ss_pred HHHHHhcCccccccCccCChHHHHHHHHHHHHHH-------HHhccC-----chhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344554332 233468888988876555554433 222211 1123677777777777777788888899
Q ss_pred CcchhhHhhhhhhhHHHhhccccc
Q 042621 115 DPALTHLFLMNNIHYMVRSVRSCL 138 (291)
Q Consensus 115 d~~l~~iFLlNN~~yI~~~l~~s~ 138 (291)
++..+.+||.||+.+|+..+....
T Consensus 463 ~~k~~~iFLiNNY~lIl~iL~~~~ 486 (508)
T PF04129_consen 463 DRKEREIFLINNYDLILSILSERT 486 (508)
T ss_pred cccccceehHHHHHHHHHHHHhcc
Confidence 999999999999999999997654
No 7
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=95.49 E-value=0.42 Score=47.60 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCcccchHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHhhhccCCCcchhhHhhhhhhh
Q 042621 49 LDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTESDSQLASVTMRIMQALQTNLDGKSKQYKDPALTHLFLMNNIH 128 (291)
Q Consensus 49 ~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~~~~~~~~~~~l~~~v~~ii~~L~~~Le~ksk~y~d~~l~~iFLlNN~~ 128 (291)
.|.+.|++|+-.-.|+..+. .+=...+++- .+.....++....+..+...|+.++++--+.+||.||+.
T Consensus 474 ~d~rPHyitrRyAEf~ss~~-------~l~v~~~~~~----~~~~ll~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYd 542 (683)
T KOG1961|consen 474 LDTRPHYITRRYAEFLSSFL-------MLNVTYGNEQ----DVERLLERLQMEVESFLLRMAKLFPTRKQQLVFLINNYD 542 (683)
T ss_pred cCCCchHHHHHHHHHHHHHH-------HHHHhccccc----hHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeccHH
Confidence 68899999986555544332 2222222221 155666666666677777889999999999999999999
Q ss_pred HHHhhcccc
Q 042621 129 YMVRSVRSC 137 (291)
Q Consensus 129 yI~~~l~~s 137 (291)
+|..-+.+-
T Consensus 543 lil~vL~e~ 551 (683)
T KOG1961|consen 543 LILGVLMEA 551 (683)
T ss_pred HHHHHHHhh
Confidence 999888653
No 8
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.42 E-value=6.3 Score=40.12 Aligned_cols=221 Identities=15% Similarity=0.180 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhccC-C-CCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCchH
Q 042621 15 ESALGLTKRLAQTAQETFGDFEEA-VEKDAT-K-TAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTESDSQL 91 (291)
Q Consensus 15 ~~~~~ll~~l~~~~~~~l~ef~~~-I~~~~~-~-~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~~~~~~~~~~~l 91 (291)
+.+.-.+..+...+++.|..|... +..-.. + ..-.-++| +=|+-....+-...+++++... ..+.+
T Consensus 603 sfls~tlgsllv~VkrqFdrfiq~qc~qieevki~kksk~gI-------LPyv~rFenfa~raE~if~nae----rRtdl 671 (867)
T KOG2148|consen 603 SFLSLTLGSLLVRVKRQFDRFIQNQCSQIEEVKIAKKSKIGI-------LPYVFRFENFARRAEIIFENAE----RRTDL 671 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cccHHHHHHHHHHHHHHHhhhh----hcchH
Confidence 345556677777888888888853 322111 1 11123344 4477788888888999998643 34568
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcchhhHhhhhhhhHHHhhccccccccchhHHHHHHHHHHHHHHHHHHhcHHHHHHh
Q 042621 92 ASVTMRIMQALQTNLDGKSKQYKDPALTHLFLMNNIHYMVRSVRSCLACSRDDWVQRHRRIVQQHANQYKRTAWAKILQC 171 (291)
Q Consensus 92 ~~~v~~ii~~L~~~Le~ksk~y~d~~l~~iFLlNN~~yI~~~l~~s~l~lg~~~~~~~~~~v~~~~~~Y~~~sW~~v~~~ 171 (291)
......++.+....+|.-|..+.. +-+.|-+|-|+|++...+-.-.+...+.....+......+.+.|+..+.+.-+.-
T Consensus 672 ekaYtklvravfvgiek~Aqq~pK-tp~dVv~mENyh~~y~tLs~Lkis~lda~kkeaka~~~dhl~ayV~~~~GrPLek 750 (867)
T KOG2148|consen 672 EKAYTKLVRAVFVGIEKIAQQDPK-TPADVVLMENYHHFYATLSDLKISCLDAAKKEAKALYADHLAAYVKESMGRPLEK 750 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 999999999999999998887764 4577889999999998884332222223333445566777888988777766554
Q ss_pred hcc----cCCCCCCCCCCCCCCCCC----CC-ccchHHHHHHH-HHHHHHHHHHHHh-cCcceecCHHHHHHHHHHHHHH
Q 042621 172 LSV----QGLTSSGGGGSVATDGGN----SS-GVSRALIKDRF-KVFNIQFEELHQK-QSQWTVPDTELRESLRLAVAEV 240 (291)
Q Consensus 172 L~~----~~~~~~~~~~~~~~~~~~----~~-~~~r~~lK~~f-~~Fn~~Fee~~~~-q~~w~V~D~~LR~~Lr~~i~~~ 240 (291)
|.. ...... +|--+. ..+ .+ -..|..+++-- +..-+.+|.+|+. +++- +....|=+.+=.+..+-
T Consensus 751 ln~Ffe~v~~~va--qGirpe-eiSYQ~aFsk~elrkvi~qypgkEVkKglenlYKKveKnL-~aeenLLqvvW~~mqee 826 (867)
T KOG2148|consen 751 LNTFFEGVNNKVA--QGIRPE-EISYQLAFSKQELRKVIKQYPGKEVKKGLENLYKKVEKNL-LAEENLLQVVWHKMQEE 826 (867)
T ss_pred HHHHHHhhHHHHh--cCCChh-hhhHHHHhhHHHHHHHHHHcchhhHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHH
Confidence 432 111111 111000 000 00 01122233222 2255678888876 4443 34677777777777777
Q ss_pred HHHHHHHHHHH
Q 042621 241 LLPAYRSFVKR 251 (291)
Q Consensus 241 V~p~Y~~f~~~ 251 (291)
.+.-|..|-+.
T Consensus 827 Fi~qy~~f~~l 837 (867)
T KOG2148|consen 827 FIDQYESFEQL 837 (867)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 9
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=63.61 E-value=2.1 Score=34.01 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=17.4
Q ss_pred CCccCCCCCCcccccCHHHHH
Q 042621 254 PLVENGKNPQKYIRYSAEDLE 274 (291)
Q Consensus 254 ~~~~~~k~~~Kyikytpe~le 274 (291)
..-++-+||+||.|||-+++.
T Consensus 53 ~vPDYv~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 53 GVPDYVRNPEKWTKYSLDDVS 73 (115)
T ss_pred CCCCCcCCcccceeeecCCCc
Confidence 334678999999999999984
No 10
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=60.19 E-value=8.2 Score=26.98 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=15.4
Q ss_pred cCCCCCCcccccCHHHHHHHHHhhc
Q 042621 257 ENGKNPQKYIRYSAEDLERMLGEFF 281 (291)
Q Consensus 257 ~~~k~~~Kyikytpe~le~~l~~LF 281 (291)
.+.+.+-.|++++||+|+++|-+|-
T Consensus 17 P~~~~~P~W~~~~~~eVe~~I~kla 41 (60)
T PF08069_consen 17 PYRRSPPSWLKYSPEEVEELIVKLA 41 (60)
T ss_dssp -S-SS--TT--S-HHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 4456677899999999999998884
No 11
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=53.02 E-value=38 Score=25.06 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=34.9
Q ss_pred ccCccchHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 042621 4 VFKGKACTEIRE-------SALGLTKRLAQTAQETFGDFEEAVEKDAT 44 (291)
Q Consensus 4 lf~~~~~~~~~~-------~~~~ll~~l~~~~~~~l~ef~~~I~~~~~ 44 (291)
.|+.+.|++|+. +++.+++..+..+.+.+.-|...|+.-+.
T Consensus 28 ~is~~Ecd~Ir~p~~T~sqqARrLLD~V~~KG~~A~~~ll~~vq~~~~ 75 (81)
T cd08788 28 FFSSYDCDEIRLPIFTPSQQARRLLDLVKAKGEGAAKFLLEYVQQLPE 75 (81)
T ss_pred CccHhhcchhhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence 578888999987 78999999999999999999999986543
No 12
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=47.80 E-value=1.2e+02 Score=32.60 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcceec--CHHHHHHHHHHHHHHHHHHHHHHH
Q 042621 199 ALIKDRFKVFNIQFEELHQKQSQWTVP--DTELRESLRLAVAEVLLPAYRSFV 249 (291)
Q Consensus 199 ~~lK~~f~~Fn~~Fee~~~~q~~w~V~--D~~LR~~Lr~~i~~~V~p~Y~~f~ 249 (291)
+.|-+.+|.-| |++++..|-.-.+- -| |.+.+|++..-.|+|+|.+--
T Consensus 1015 enI~ql~KSkn--l~dtvar~i~~~~Qtsg~-lQ~a~resm~SsviPafEKSc 1064 (1283)
T KOG1916|consen 1015 ENINQLLKSKN--LEDTVARQIQAQFQTSGP-LQEALRESMESSVIPAFEKSC 1064 (1283)
T ss_pred HHHHHHHhhcc--HHHHHHHHHHHHHhccch-HHHHHHHHhhhhccHHHHHHH
Confidence 33444444444 66665554333332 33 999999999999999998643
No 13
>PHA01746 hypothetical protein
Probab=44.26 E-value=7.9 Score=30.34 Aligned_cols=20 Identities=10% Similarity=0.660 Sum_probs=11.1
Q ss_pred HHHHHHhCCCccCCCCCCcccccCHH
Q 042621 246 RSFVKRFGPLVENGKNPQKYIRYSAE 271 (291)
Q Consensus 246 ~~f~~~~~~~~~~~k~~~Kyikytpe 271 (291)
..|+++|.+. ..||+|+||.
T Consensus 77 a~FLeKYS~~------LnkYVkFs~~ 96 (131)
T PHA01746 77 AEFLEKYSDF------LNEYVKFTPR 96 (131)
T ss_pred HHHHHHHHHH------HHHHeeeccC
Confidence 4566666543 2466666663
No 14
>PRK11352 regulator protein FrmR; Provisional
Probab=40.50 E-value=99 Score=23.34 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=38.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCcccchHHHHHHHH
Q 042621 6 KGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDAT-KTAVLDGTVHPLTSYVINYV 64 (291)
Q Consensus 6 ~~~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I~~~~~-~~~~~dg~VH~lT~~~m~yl 64 (291)
.|.+|.++..++.++-..|......++.+.....-.++. .....+..+.++..-+-.|+
T Consensus 31 ~~~~C~dil~Ql~Avr~Al~~~~~~ile~hl~~cv~~~~~~~~~~~~~i~el~~~i~~~~ 90 (91)
T PRK11352 31 GDAECRAILQQIAAVRGAANGLMAEVLESHIRETFDRNDCYSREVSQSVDDTIELVRAYL 90 (91)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHHh
Confidence 478999999999999999999999988887765433332 11112334555554444443
No 15
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.91 E-value=32 Score=26.05 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhhc
Q 042621 148 RHRRIVQQHANQYKRTAWAKILQCLS 173 (291)
Q Consensus 148 ~~~~~v~~~~~~Y~~~sW~~v~~~L~ 173 (291)
.-...|.++.+.||+ +|+-|...+.
T Consensus 61 ~e~~Cis~CmdRyMd-awniVSrty~ 85 (97)
T KOG1733|consen 61 SEKSCISRCMDRYMD-AWNIVSRTYI 85 (97)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 345678899999997 9998876553
No 16
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=33.69 E-value=49 Score=27.50 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=21.9
Q ss_pred cCCCCCCcccccCHHHHHHHHHhhcCC
Q 042621 257 ENGKNPQKYIRYSAEDLERMLGEFFEG 283 (291)
Q Consensus 257 ~~~k~~~Kyikytpe~le~~l~~LFeg 283 (291)
.+.+.|-.|++++||++|++|-+|-.-
T Consensus 17 P~~~~~P~W~~~~~eeve~~I~~lakk 43 (151)
T PRK08561 17 PARTEPPEWVDYSPEEIEELVVELAKQ 43 (151)
T ss_pred CCCCCCCccccCCHHHHHHHHHHHHHC
Confidence 445667789999999999999888643
No 17
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=32.81 E-value=1.5e+02 Score=19.95 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCcceecCHHHHHHHHHHHH
Q 042621 204 RFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVA 238 (291)
Q Consensus 204 ~f~~Fn~~Fee~~~~q~~w~V~D~~LR~~Lr~~i~ 238 (291)
-.+.|-.+.-++-..+.. +-||+||..+.++..
T Consensus 12 ~~~~Fp~~L~~lL~~~~~--~L~p~lR~~lv~aLi 44 (52)
T PF08158_consen 12 ETKDFPQELIDLLRNHHT--VLDPDLRMKLVKALI 44 (52)
T ss_pred HHHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHH
Confidence 356788888888777554 779999999988765
No 18
>PF03682 UPF0158: Uncharacterised protein family (UPF0158); InterPro: IPR005361 This is a small family of hypothetical bacterial proteins of unknown function.
Probab=28.53 E-value=45 Score=28.00 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=34.7
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHHh
Q 042621 224 VPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGE 279 (291)
Q Consensus 224 V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~ 279 (291)
|+||.+|+.|.++|.. -.+|++|-+.... +..=.++|-.|--+.+...+.+
T Consensus 82 v~d~~l~~~L~~ai~g--rgafrrFKd~L~~---~~~~~e~Wy~F~~~~~r~~a~e 132 (163)
T PF03682_consen 82 VEDPDLRERLLRAIQG--RGAFRRFKDILSE---YPELRERWYAFREERLRERAIE 132 (163)
T ss_pred CCCHHHHHHHHHHHhC--CcHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999987 5789999875321 1111256666666666665544
No 19
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=25.62 E-value=67 Score=22.03 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=18.2
Q ss_pred HhcCcceecCH-HHHHHHHHHHHHHH
Q 042621 217 QKQSQWTVPDT-ELRESLRLAVAEVL 241 (291)
Q Consensus 217 ~~q~~w~V~D~-~LR~~Lr~~i~~~V 241 (291)
..+-+|+|.|| .|-+-+..+..++|
T Consensus 17 ~a~AQWvV~DP~NlAQ~Iinaa~eiv 42 (55)
T PF13605_consen 17 PARAQWVVTDPGNLAQNIINAAKEIV 42 (55)
T ss_pred cceeEEEEeCchHHHHHHHHHHHHHH
Confidence 35679999997 47777777666654
No 20
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=25.00 E-value=2.5e+02 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=26.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcHHHHHHhhccc
Q 042621 141 SRDDWVQRHRRIVQQHANQYKRTAWAKILQCLSVQ 175 (291)
Q Consensus 141 lg~~~~~~~~~~v~~~~~~Y~~~sW~~v~~~L~~~ 175 (291)
.+++.+..+.+.++.|.+-|+ +.+.+++.|.+.
T Consensus 117 Ik~dYldvYa~lvk~YTd~yQ--~fn~~lSkls~~ 149 (308)
T TIGR02553 117 IGDSYLGVYENVVEGYTDFYQ--AFSDILSKMQDW 149 (308)
T ss_pred HHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh
Confidence 457788889999999999885 677889888543
No 21
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=24.77 E-value=21 Score=36.54 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHHhhc
Q 042621 239 EVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGEFF 281 (291)
Q Consensus 239 ~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~LF 281 (291)
..|.|.|-.|.+.++-.....+--..|+|+.|++.|+.|.-|=
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4789999999999885322335567899999999999998663
No 22
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.53 E-value=2.3e+02 Score=21.36 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=29.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042621 6 KGKACTEIRESALGLTKRLAQTAQETFGDFEEAV 39 (291)
Q Consensus 6 ~~~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I 39 (291)
+|.+|.+|..++.++-..|..++..++.+-....
T Consensus 31 e~~~C~dVl~QIaAVr~Al~~~~~~vl~~hl~~c 64 (89)
T COG1937 31 EDRDCIDVLQQIAAVRGALNGLMREVLEEHLKEC 64 (89)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999998866543
No 23
>PF08741 YwhD: YwhD family; InterPro: IPR014852 The members of this entry are currently uncharacterised. They are around 170 amino acids in length.
Probab=23.89 E-value=70 Score=26.71 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=23.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHhcCcceecCHHHHHHH
Q 042621 193 SSGVSRALIKDRFKVFNIQFEELHQKQSQWTVPDTELRESL 233 (291)
Q Consensus 193 ~~~~~r~~lK~~f~~Fn~~Fee~~~~q~~w~V~D~~LR~~L 233 (291)
+...+|..+++-+..+|.+ -|.-++++||+.|
T Consensus 131 md~~sk~~L~~fL~~h~~~---------mW~~S~~eLk~aL 162 (163)
T PF08741_consen 131 MDDESKKILADFLKEHNPE---------MWERSSEELKEAL 162 (163)
T ss_pred CCHHHHHHHHHHHHHcCHH---------HHhcCcHHHHHhh
Confidence 3456777777666666654 4888899999876
No 24
>PF10020 DUF2262: Uncharacterized protein conserved in bacteria (DUF2262); InterPro: IPR019260 This entry consists of various hypothetical bacterial proteins with no known function.
Probab=22.27 E-value=3e+02 Score=22.35 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCcceecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHH
Q 042621 209 NIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLG 278 (291)
Q Consensus 209 n~~Fee~~~~q~~w~V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~ 278 (291)
-..+++++..+..|. .+++..+.+.+++.++. |...... ......++.+.|++++.+.|.
T Consensus 49 l~~~~~l~~~~e~~~-------~~i~~~aae~ll~laNd-W~~~~e~--~~~~~~~~~~it~e~F~~~i~ 108 (150)
T PF10020_consen 49 LKWIEKLLKNIEEWD-------KKIKDFAAEKLLDLAND-WREDDEE--EEDEEEDAPEITEEEFAKRIY 108 (150)
T ss_pred HHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHH-Hhhcccc--ccccccccCccCHHHHhhhcE
Confidence 344555666655554 57778888889999999 6665532 122334566799999988774
No 25
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=22.06 E-value=1.7e+02 Score=28.75 Aligned_cols=71 Identities=30% Similarity=0.374 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcC-----------cce------ecCHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCccCCCCCCcc
Q 042621 206 KVFNIQFEELHQKQS-----------QWT------VPDTELRESLR---LAVAEVLLPAYRSFVKRFGPLVENGKNPQKY 265 (291)
Q Consensus 206 ~~Fn~~Fee~~~~q~-----------~w~------V~D~~LR~~Lr---~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Ky 265 (291)
+.||..|-++....+ .|- ..||+|-+.+- .+....|-..-..|-+++-+ +|..|.+
T Consensus 197 k~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ld--ef~~n~d-- 272 (753)
T KOG0464|consen 197 KGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLD--EFDENFD-- 272 (753)
T ss_pred ccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--Hhhcccc--
Confidence 468888888876533 333 35899877664 45555666666666666654 5655554
Q ss_pred cccCHHHHHHHHHhhc
Q 042621 266 IRYSAEDLERMLGEFF 281 (291)
Q Consensus 266 ikytpe~le~~l~~LF 281 (291)
|.+.+++...|.+|=
T Consensus 273 -~i~a~elksai~~lt 287 (753)
T KOG0464|consen 273 -KIDAEELKSAIHELT 287 (753)
T ss_pred -ccCHHHHHHHHHHHh
Confidence 478999999888763
No 26
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=6e+02 Score=22.94 Aligned_cols=72 Identities=4% Similarity=0.014 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHH-HHhhccCCCCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHH
Q 042621 26 QTAQETFGDFEE-AVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTESDSQLASVTMRIMQALQT 104 (291)
Q Consensus 26 ~~~~~~l~ef~~-~I~~~~~~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~~~~~~~~~~~l~~~v~~ii~~L~~ 104 (291)
.+|.+.|..+.. .++. +..|+|+...++...-+-.-+.+.++.-.++..-.+ -.+|..|+.++.-....
T Consensus 19 ~aC~klL~~lKveL~K~---n~l~~~~~~~~~~k~~l~~aR~ilEi~vl~SI~t~D-------~~sFerY~~Qlk~YY~d 88 (260)
T KOG3151|consen 19 VACEKLLDQLKVELTKN---NLLPPDLNISDIDKQQLIIARDILEIGVLLSILTKD-------FESFERYMNQLKPYYFD 88 (260)
T ss_pred HHHHHHHhHHHHHHHHH---hcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHhcchhcc
Confidence 467788887774 4443 356789988888887777777777776544433222 24689999998776665
Q ss_pred HHH
Q 042621 105 NLD 107 (291)
Q Consensus 105 ~Le 107 (291)
..+
T Consensus 89 ~~~ 91 (260)
T KOG3151|consen 89 YNE 91 (260)
T ss_pred ccc
Confidence 555
No 27
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=21.47 E-value=2.8e+02 Score=28.38 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCcceecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHH
Q 042621 196 VSRALIKDRFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLER 275 (291)
Q Consensus 196 ~~r~~lK~~f~~Fn~~Fee~~~~q~~w~V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~ 275 (291)
..+.-.++..+.|+++-|.+...|-.|.+ .+.|.+|.++|.+.+-.+-.+=+...-. .|-+-=..+|.+
T Consensus 402 s~~~~~~~~~~~fde~~E~~~~~~~~wd~--ski~~Kls~diea~i~~lr~akLke~~~---------~~e~~l~~else 470 (772)
T KOG2203|consen 402 SVADGKQSCEKKFDEECETAKIEQALWDT--SKIREKLSRDIEAHISSLRTAKLKEKTG---------LYEKKLVPELSE 470 (772)
T ss_pred HHHHHHHHHHHHHHhhhHhhcccccccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhcccHhhhH
Confidence 34455566778999999999999999996 6899999999999887776654433221 122222345777
Q ss_pred HHHhhcCCCCCC
Q 042621 276 MLGEFFEGKTLN 287 (291)
Q Consensus 276 ~l~~LFeg~~~~ 287 (291)
-+..||+|...+
T Consensus 471 ~Ve~ll~~~s~e 482 (772)
T KOG2203|consen 471 PVEALLDGASKE 482 (772)
T ss_pred HHHHHHhccccc
Confidence 777888876543
No 28
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=21.31 E-value=73 Score=31.95 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCcceecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCCCCCCcccccCHHHHH
Q 042621 196 VSRALIKDRFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLV-ENGKNPQKYIRYSAEDLE 274 (291)
Q Consensus 196 ~~r~~lK~~f~~Fn~~Fee~~~~q~~w~V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~-~~~k~~~Kyikytpe~le 274 (291)
.-|..+-.+.+.|++.|+|+.+.-. .....+....|.++|-.....+ ++-+.-.-|..++-+.+|
T Consensus 95 ~Lr~~l~s~~r~F~E~f~ell~~ae--------------~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nle 160 (563)
T KOG3821|consen 95 VLRFVLASNARKFDEFFLELLRNAE--------------NSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLE 160 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3456677788999999999976532 2333445555665554433211 111223457777888899
Q ss_pred HHHHhhcC
Q 042621 275 RMLGEFFE 282 (291)
Q Consensus 275 ~~l~~LFe 282 (291)
++|+++|.
T Consensus 161 e~l~eff~ 168 (563)
T KOG3821|consen 161 ETLNEFFA 168 (563)
T ss_pred HHHHHHHH
Confidence 99998884
No 29
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=21.29 E-value=84 Score=31.04 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcceecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHH
Q 042621 199 ALIKDRFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERM 276 (291)
Q Consensus 199 ~~lK~~f~~Fn~~Fee~~~~q~~w~V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~ 276 (291)
+++|++++. ..+|--.=.-.+.|.++|.+=|.+|-+.|... ...|+ ++..+ +..+.++-|.||.++|+.+
T Consensus 120 ~mik~~~k~-~~~~~~~~gw~~~WPla~DeeR~klLkkI~~l----l~~l~-~~k~L--s~s~~~~vi~ft~~~L~~l 189 (466)
T PF04780_consen 120 EMIKNRLKD-VKSFVYKNGWSKDWPLADDEERAKLLKKIHSL----LKSLC-KHKIL--SCSHRDWVIQFTVEELQKL 189 (466)
T ss_pred HHHHHHHhh-cchhhhhcCCCCCCCCCCCHHHHHHHHHHHHH----HHHHH-hcCcc--cHHHHHHHHHhhHHHHhcc
Confidence 467777665 33333111237899999999999999988876 44555 55543 3456678899999988543
No 30
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=20.75 E-value=1.5e+02 Score=26.89 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q 042621 202 KDRFKVFNIQFEEL 215 (291)
Q Consensus 202 K~~f~~Fn~~Fee~ 215 (291)
+.|+++.|++||-+
T Consensus 127 RRRLkKVNEAFE~L 140 (284)
T KOG3960|consen 127 RRRLKKVNEAFETL 140 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 34799999999988
Done!