Query 042621
Match_columns 291
No_of_seqs 112 out of 459
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 3E-67 1E-71 520.6 23.5 275 1-285 282-571 (571)
2 2b1e_A Exocyst complex compone 100.0 8.7E-62 3E-66 480.2 23.4 263 3-281 258-563 (564)
3 2x5h_A ORF 131; viral protein; 43.3 3.5 0.00012 29.5 -0.8 19 246-270 78-96 (97)
4 4e9f_A Methyl-CPG-binding doma 42.0 19 0.00065 29.0 3.3 35 239-280 47-81 (161)
5 2hh7_A Hypothetical protein CS 33.8 14 0.00047 28.4 1.1 69 6-75 32-100 (119)
6 3u5c_N S27A, YS15, 40S ribosom 33.4 36 0.0012 27.1 3.5 26 257-282 17-42 (151)
7 3swh_A MUNC13-1, protein UNC-1 33.1 96 0.0033 27.9 6.9 112 21-135 16-133 (341)
8 2xzm_O RPS13E; ribosome, trans 33.0 37 0.0013 27.1 3.5 26 257-282 19-44 (153)
9 3nft_A Translocator protein BI 30.0 36 0.0012 30.1 3.3 42 240-282 142-189 (303)
10 2csb_A Topoisomerase V, TOP61; 26.0 3.3E+02 0.011 23.8 8.8 63 205-284 254-322 (519)
11 1ozj_A SMAD 3; MAD homology do 24.1 44 0.0015 26.4 2.5 35 8-44 26-60 (144)
12 4adn_A FAR1; antibiotic resist 21.6 1.1E+02 0.0038 25.9 4.7 46 224-280 36-88 (222)
13 2jr2_A UPF0352 protein CPS_261 21.3 46 0.0016 23.2 1.9 15 267-281 6-20 (76)
14 2juz_A UPF0352 protein HI0840; 20.1 50 0.0017 23.3 1.8 15 267-281 6-20 (80)
15 2ket_A Cathelicidin-6; antimic 20.1 58 0.002 17.5 1.7 15 204-218 2-16 (27)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=3e-67 Score=520.64 Aligned_cols=275 Identities=31% Similarity=0.533 Sum_probs=247.2
Q ss_pred CccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCC-CCCCCcccchHHHHHHHHHHHHhcHHHHHHHH
Q 042621 1 IESVFKGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDA-TKT-AVLDGTVHPLTSYVINYVKFLFDYQSTLKQLF 78 (291)
Q Consensus 1 ~~~lf~~~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I~~~~-~~~-~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL 78 (291)
++++|+|.++ +++.++.+++++|+++|+++|.||.+.|++++ ++. +|.||+|||+|+||||||+.|++|++++..+|
T Consensus 282 ~~~~f~g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il 360 (571)
T 2pft_A 282 FDQVLQGTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAML 360 (571)
T ss_dssp HHHHTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4678999888 58999999999999999999999999999986 444 45599999999999999999999999999999
Q ss_pred hhccCC--------CCCCchHHHHHHHHHHHHHHHHHhhhccCCCcchhhHhhhhhhhHHHhhccccccc--cc---hhH
Q 042621 79 QEFENG--------TESDSQLASVTMRIMQALQTNLDGKSKQYKDPALTHLFLMNNIHYMVRSVRSCLAC--SR---DDW 145 (291)
Q Consensus 79 ~~~~~~--------~~~~~~l~~~v~~ii~~L~~~Le~ksk~y~d~~l~~iFLlNN~~yI~~~l~~s~l~--lg---~~~ 145 (291)
..+..+ +++.++|+.++.++|++|+.|||+||+.|+|++|++||||||+|||++.+++|++. || ++|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~~~ 440 (571)
T 2pft_A 361 ASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTA 440 (571)
T ss_dssp HTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCTTH
T ss_pred hccCCCcccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhCcchhHH
Confidence 865321 12345799999999999999999999999999999999999999999999999887 77 789
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHhcCcceec
Q 042621 146 VQRHRRIVQQHANQYKRTAWAKILQCLSVQGLTSSGGGGSVATDGGNSSGVSRALIKDRFKVFNIQFEELHQKQSQWTVP 225 (291)
Q Consensus 146 ~~~~~~~v~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~~lK~~f~~Fn~~Fee~~~~q~~w~V~ 225 (291)
+++++.++++|++.| +++|++|+++|.+++.....++|. +++++|+.||++|++||.+|||+|+.|+.|+||
T Consensus 441 ~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~-------ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~Vp 512 (571)
T 2pft_A 441 ERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVK-------LRDKERQMIKERFKGFNDGLEELCKIQKVWAIP 512 (571)
T ss_dssp HHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCC-------cCcccHHHHHHHHHHHHHHHHHHHHhCCcccCc
Confidence 999999999999999 899999999999875432111222 456889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHHhhcCCCC
Q 042621 226 DTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGEFFEGKT 285 (291)
Q Consensus 226 D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~LFeg~~ 285 (291)
||+||+.||.+|.++|+|+|++||++|+. ++|+|||+||||||||+||++|++||+|++
T Consensus 513 D~~LR~~Lr~~i~~~v~paY~~F~~r~~~-~~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 513 DTEQRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCc-CcccCCCCCccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998 589999999999999999999999999974
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=8.7e-62 Score=480.22 Aligned_cols=263 Identities=21% Similarity=0.349 Sum_probs=233.5
Q ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhh
Q 042621 3 SVFKGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDATK--TAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQE 80 (291)
Q Consensus 3 ~lf~~~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I~~~~~~--~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~ 80 (291)
.+|.|..+... .++.+++++|+++|+++|+||.+.|+.++++ .+|+||+|||+|++|||||+.|++|.++|..+|.+
T Consensus 258 ~~~~~~~~~~~-~~~~~~l~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~ 336 (564)
T 2b1e_A 258 KSLRGKELQNY-NLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDN 336 (564)
T ss_dssp HHTTTCCCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTT
T ss_pred HHHcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 46888777755 9999999999999999999999999987654 34789999999999999999999999999999864
Q ss_pred -----ccC----------------CCCCCchHHHHHHHHHHHHHHHHHhh------------------hccCCCcchhhH
Q 042621 81 -----FEN----------------GTESDSQLASVTMRIMQALQTNLDGK------------------SKQYKDPALTHL 121 (291)
Q Consensus 81 -----~~~----------------~~~~~~~l~~~v~~ii~~L~~~Le~k------------------sk~y~d~~l~~i 121 (291)
|.+ ++++.++|+.++.++|++|+.+||+| |+.|+|++++ +
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~ 415 (564)
T 2b1e_A 337 ITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-F 415 (564)
T ss_dssp CCGGGTSCTTCCGGGSCCCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-H
T ss_pred ccccCCCcccccccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-H
Confidence 211 11223579999999999999999999 5779999885 6
Q ss_pred hhhhhhhHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHhcHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccchH
Q 042621 122 FLMNNIHYMVRSVRSCLAC--SRDDWVQRHRRIVQQHANQYKRTAWAKILQCLSVQGLTSSGGGGSVATDGGNSSGVSRA 199 (291)
Q Consensus 122 FLlNN~~yI~~~l~~s~l~--lg~~~~~~~~~~v~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~r~ 199 (291)
|||||.|||++.+++|+|. ||++|.++++..+++|. .|++++|++|++||.+++...+ +| + ++++|+
T Consensus 416 FllNN~~yI~~~v~~SeL~~lLg~~~~~~~~~~~~~~~-~y~~~sW~~v~~~L~~~~~~~~--~~-------k-s~~~k~ 484 (564)
T 2b1e_A 416 FILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTANLMDSVFIDS--SG-------K-KSKDKE 484 (564)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTC--SS-------S-CCCCHH
T ss_pred HHHHhHHHHHHHHhhhhhHhHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCC--CC-------C-ccccHH
Confidence 9999999999999999988 99999999999999995 8999999999999998764322 12 1 357899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcceecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHHh
Q 042621 200 LIKDRFKVFNIQFEELHQKQSQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGE 279 (291)
Q Consensus 200 ~lK~~f~~Fn~~Fee~~~~q~~w~V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~ 279 (291)
.+|++|++||++|||+|+.|+.|+||||+||+.||.+|.++|+|+|++||+||+. |+|||+|||||||++||++|++
T Consensus 485 ~iKe~fk~FN~~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~---~~k~~~KyiKytpe~le~~l~~ 561 (564)
T 2b1e_A 485 QIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD---SFKNPRKHIKYTPDELTTVLNQ 561 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG---GSSSGGGTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccCCCCCcccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999995 7899999999999999999999
Q ss_pred hc
Q 042621 280 FF 281 (291)
Q Consensus 280 LF 281 (291)
|+
T Consensus 562 L~ 563 (564)
T 2b1e_A 562 LV 563 (564)
T ss_dssp HH
T ss_pred hc
Confidence 96
No 3
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=43.33 E-value=3.5 Score=29.53 Aligned_cols=19 Identities=11% Similarity=0.759 Sum_probs=9.2
Q ss_pred HHHHHHhCCCccCCCCCCcccccCH
Q 042621 246 RSFVKRFGPLVENGKNPQKYIRYSA 270 (291)
Q Consensus 246 ~~f~~~~~~~~~~~k~~~Kyikytp 270 (291)
..|+++|.+-+ .||+|+||
T Consensus 78 a~FLeKYS~~L------nkYVkF~~ 96 (97)
T 2x5h_A 78 AEFLEKYSDFL------NEYVKFTP 96 (97)
T ss_dssp HHHHHHTHHHH------HHHC----
T ss_pred HHHHHHHHHHH------HHhhcccc
Confidence 46677776432 57778776
No 4
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=42.02 E-value=19 Score=28.96 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHHhh
Q 042621 239 EVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGEF 280 (291)
Q Consensus 239 ~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~L 280 (291)
+.|.|+|.+|.++|.. |+...+-++++|+++|..+
T Consensus 47 ~~v~~~~~~l~~~~pt-------~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 47 KMAIPVLWKFLEKYPS-------AEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHHHHHHHHSCS-------HHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHCCC-------HHHHhccChHhHHhHhhhc
Confidence 3589999999999874 5677888999999999876
No 5
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=33.75 E-value=14 Score=28.44 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=36.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccchHHHHHHHHHHHHhcHHHHH
Q 042621 6 KGKACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLK 75 (291)
Q Consensus 6 ~~~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I~~~~~~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~ 75 (291)
.|.+|.+|..++.++-..|..+...+|.+-....-.++......+-.+-++..-+ .|++.|.+...-|.
T Consensus 32 edr~C~DIL~QlaAVrsAL~~~~~~ILe~HL~~Cv~~a~~~~~~~e~ieEl~~~i-k~~k~~~~~~~~~~ 100 (119)
T 2hh7_A 32 SDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFSTAVLDGHGQAAIEELIDAV-KFTPALTGPHARLG 100 (119)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCSSTTHHHHHHHHHHHTT-CC------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCchHHHHHHHHHHH-HHHHhccCcccccc
Confidence 4789999999999999999999998887766543322221110112345555544 56666655544443
No 6
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=33.35 E-value=36 Score=27.11 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=21.3
Q ss_pred cCCCCCCcccccCHHHHHHHHHhhcC
Q 042621 257 ENGKNPQKYIRYSAEDLERMLGEFFE 282 (291)
Q Consensus 257 ~~~k~~~Kyikytpe~le~~l~~LFe 282 (291)
.+.+.+-.|+++||||++++|-+|-.
T Consensus 17 P~~~~~P~W~~~~~eeVe~~I~klak 42 (151)
T 3u5c_N 17 PYSRNAPAWFKLSSESVIEQIVKYAR 42 (151)
T ss_dssp CSCCSCCSSCCSCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 44556778999999999999988754
No 7
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=33.14 E-value=96 Score=27.94 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccchHHHHHHHHHHHHhcHHHHHHHHhhccCCCCC---CchHHHHHHH
Q 042621 21 TKRLAQTAQETFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFENGTES---DSQLASVTMR 97 (291)
Q Consensus 21 l~~l~~~~~~~l~ef~~~I~~~~~~~~~~dg~VH~lT~~~m~yl~~L~~~~~~l~~iL~~~~~~~~~---~~~l~~~v~~ 97 (291)
..=|..+..++..-+..+|+.|........+.-..-.+.|+.-...+.+..+.+.++ +|++.... ...|..-|+.
T Consensus 16 ~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L--~WpD~~~~~~f~t~l~~~i~~ 93 (341)
T 3swh_A 16 IQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKL--ECPDPQIVGHYMRRFAKTISN 93 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHH
Confidence 344555555666556677776643222111222234556666666665555544333 23221100 0123344444
Q ss_pred HHHHHHHHHHhhhccCC-Cc--chhhHhhhhhhhHHHhhcc
Q 042621 98 IMQALQTNLDGKSKQYK-DP--ALTHLFLMNNIHYMVRSVR 135 (291)
Q Consensus 98 ii~~L~~~Le~ksk~y~-d~--~l~~iFLlNN~~yI~~~l~ 135 (291)
++......++.|-..|- +. ...|| +|||..|+...+.
T Consensus 94 ~~~~Y~~~l~~~~~~~~~~e~~~~~Cv-~lNNie~lR~~L~ 133 (341)
T 3swh_A 94 VLLQYADIVSKDFASYCSKEKEKVPCI-LMNNTQQLRVQLE 133 (341)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSCHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhh-hcccHHHHHHHHH
Confidence 44444555566654443 23 33455 7799999999886
No 8
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=33.00 E-value=37 Score=27.10 Aligned_cols=26 Identities=4% Similarity=0.132 Sum_probs=21.2
Q ss_pred cCCCCCCcccccCHHHHHHHHHhhcC
Q 042621 257 ENGKNPQKYIRYSAEDLERMLGEFFE 282 (291)
Q Consensus 257 ~~~k~~~Kyikytpe~le~~l~~LFe 282 (291)
.+.+.+-.|+++||||++++|-+|-.
T Consensus 19 P~~~~~P~W~~~~~eeVe~~I~klak 44 (153)
T 2xzm_O 19 PFKRRSPKWLHMTPSTVVDLSVKLAK 44 (153)
T ss_dssp CSCCSCCSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccccCCHHHHHHHHHHHHH
Confidence 45566778999999999999988743
No 9
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=30.02 E-value=36 Score=30.07 Aligned_cols=42 Identities=2% Similarity=0.318 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhCCCc----c--CCCCCCcccccCHHHHHHHHHhhcC
Q 042621 240 VLLPAYRSFVKRFGPLV----E--NGKNPQKYIRYSAEDLERMLGEFFE 282 (291)
Q Consensus 240 ~V~p~Y~~f~~~~~~~~----~--~~k~~~Kyikytpe~le~~l~~LFe 282 (291)
.|+..|..||+.|...+ + .. +-.|.||+.+..+.+-|+++.+
T Consensus 142 ~IVk~YTdyyQdfNe~LSKlSd~IsA-kDGN~IKFD~~sfk~~l~~l~~ 189 (303)
T 3nft_A 142 TIVEGLTKYFQSVADVMSKLQDYISA-KDDKNMKIDGGKIKALIQQVID 189 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEE-ETTTEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cCCCeeeecHHHHHHHHHHHHH
Confidence 35666666666655321 0 12 3456688888888887777644
No 10
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=26.03 E-value=3.3e+02 Score=23.81 Aligned_cols=63 Identities=22% Similarity=0.442 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhc------CcceecCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcccccCHHHHHHHHH
Q 042621 205 FKVFNIQFEELHQKQ------SQWTVPDTELRESLRLAVAEVLLPAYRSFVKRFGPLVENGKNPQKYIRYSAEDLERMLG 278 (291)
Q Consensus 205 f~~Fn~~Fee~~~~q------~~w~V~D~~LR~~Lr~~i~~~V~p~Y~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~ 278 (291)
+....+.+||+.... +.|.| ..-|+-+|+-..+.|+.+--+.-++|+- -+|+.-++.
T Consensus 254 leelyehleelserylrhpltrrwiv--ehkrdimrryleqrivecalklqdrygi---------------redvalcla 316 (519)
T 2csb_A 254 LEELYEHLEELSERYLRHPLTRRWIV--EHKRDIMRRYLEQRIVECALKLQDRYGI---------------REDVALCLA 316 (519)
T ss_dssp HHHHHHHHHHHHTTTCSSCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHH--HHhHHHHHHHHHHHHHHHHHhhhhhhcc---------------HHHHHHHHH
Confidence 344555566654432 35766 4568888888999999999999999984 278899999
Q ss_pred hhcCCC
Q 042621 279 EFFEGK 284 (291)
Q Consensus 279 ~LFeg~ 284 (291)
.-|+|+
T Consensus 317 rafdgs 322 (519)
T 2csb_A 317 RAFDGS 322 (519)
T ss_dssp HHTTTC
T ss_pred HHhCCc
Confidence 999997
No 11
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=24.05 E-value=44 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 042621 8 KACTEIRESALGLTKRLAQTAQETFGDFEEAVEKDAT 44 (291)
Q Consensus 8 ~~~~~~~~~~~~ll~~l~~~~~~~l~ef~~~I~~~~~ 44 (291)
+.....+..+..++++|.+ .+.|++++.+|.+...
T Consensus 26 ~~e~~~~kai~sLvKkLK~--~~~Le~L~~AV~s~g~ 60 (144)
T 1ozj_A 26 QEEKWCEKAVKSLVKKLKK--TGQLDELEKAITTQNV 60 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHHHHHhcc--cccHHHHHHHHhCCCC
Confidence 4556788889999999999 5789999999987653
No 12
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=21.59 E-value=1.1e+02 Score=25.88 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=35.3
Q ss_pred ecCHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCCccCCCCCCcccccCHHHHHHHHHhh
Q 042621 224 VPDTELRESLRLAVAEVLLPAY-------RSFVKRFGPLVENGKNPQKYIRYSAEDLERMLGEF 280 (291)
Q Consensus 224 V~D~~LR~~Lr~~i~~~V~p~Y-------~~f~~~~~~~~~~~k~~~Kyikytpe~le~~l~~L 280 (291)
|.|+...+.+|..+.+.|...+ ..+++.... ++.|+++.+..|.+|
T Consensus 36 vnD~~vi~avk~~~~~kI~~~f~~~~~eq~~lL~~i~~-----------~~lt~~~~e~~L~~L 88 (222)
T 4adn_A 36 VNDKETVKVIQSETYNDINEIFGHIDDDIEESLKVLMN-----------IRLSNKEIEAILNKF 88 (222)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTS-----------TTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhc-----------ccCCHHHHHHHHHHH
Confidence 6799999999999999998877 456665443 456778888777766
No 13
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=21.29 E-value=46 Score=23.21 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=13.8
Q ss_pred ccCHHHHHHHHHhhc
Q 042621 267 RYSAEDLERMLGEFF 281 (291)
Q Consensus 267 kytpe~le~~l~~LF 281 (291)
||+-+++|..|.+|+
T Consensus 6 KYsd~qvE~ll~eli 20 (76)
T 2jr2_A 6 KYSNERVEKIIQDLL 20 (76)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 799999999999986
No 14
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=20.12 E-value=50 Score=23.29 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=13.8
Q ss_pred ccCHHHHHHHHHhhc
Q 042621 267 RYSAEDLERMLGEFF 281 (291)
Q Consensus 267 kytpe~le~~l~~LF 281 (291)
||+-+++|..|.+|+
T Consensus 6 KYsd~qvE~ll~eli 20 (80)
T 2juz_A 6 KYSDAQLSAIVNDMI 20 (80)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 799999999999986
No 15
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=20.11 E-value=58 Score=17.48 Aligned_cols=15 Identities=47% Similarity=0.835 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHh
Q 042621 204 RFKVFNIQFEELHQK 218 (291)
Q Consensus 204 ~f~~Fn~~Fee~~~~ 218 (291)
+|++|-..|..+++.
T Consensus 2 rfkrfrkkfkklfkk 16 (27)
T 2ket_A 2 RFKRFRKKFKKLFKK 16 (27)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 477777777777665
Done!