BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042625
(2346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 2036 bits (5275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 954/1534 (62%), Positives = 1192/1534 (77%), Gaps = 18/1534 (1%)
Query: 824 VHWLESRKFAPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN 883
V WLESR F+PIPFPPL+YK+DTK+L+LALE LK+ Y+ VRLN +REEL LIE+AYDN
Sbjct: 38 VEWLESRSFSPIPFPPLTYKNDTKILVLALEDLKDVYASKVRLNASEREELALIEEAYDN 97
Query: 884 PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR 943
PH+ L+RIK++LLTQR FK V I M+ Y + PVY ++PLEKITDAYLDQYLWYE D+R
Sbjct: 98 PHDTLNRIKKYLLTQRVFKPVDITMMENYQNISPVYSVDPLEKITDAYLDQYLWYEADQR 157
Query: 944 HLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDXXXX 1003
LFPNWIKP+DSE PPLLVYKW QGINNL IWD S GQ V+L+T + EKID
Sbjct: 158 KLFPNWIKPSDSEIPPLLVYKWTQGINNLSEIWDVSRGQSAVLLETTLGEMAEKIDFTLL 217
Query: 1004 XXXXXXXXDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYXXXXXXXXX 1063
D NIADY+TAKNNVV+++KDMSH N YGLIRGL+FASF+ QYY
Sbjct: 218 NRLLRLIVDPNIADYITAKNNVVINFKDMSHVNKYGLIRGLKFASFIFQYYGLVIDLLLL 277
Query: 1064 XXTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRY 1123
RA+++AGP + PNEF+ + +VE HPIRLY+RY+D++++LF F +E +L Y
Sbjct: 278 GQERATDLAGPANNPNEFMQFKSKEVEKAHPIRLYTRYLDRIYMLFHFEEDEGEELTDEY 337
Query: 1124 LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS 1183
L E+PDPN EN +GYNN+KCWP+D+RMRL++ DVNLGR+VFW++++R+P S+T+++WEN+
Sbjct: 338 LAENPDPNFENSIGYNNRKCWPKDSRMRLIRQDVNLGRAVFWEIQSRVPTSLTSIKWENA 397
Query: 1184 FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRV 1243
FVSVYSK+NPNLLFSMCGFEVRILP+ RM +E SN +GVW+L +E+TK+RTA A+L+V
Sbjct: 398 FVSVYSKNNPNLLFSMCGFEVRILPRQRM-EEVVSND-EGVWDLVDERTKQRTAKAYLKV 455
Query: 1244 DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE 1303
+E +K F++R+R ILM+SGSTTFTK+ KWNT+LI L TYFREA V T+ LLD+LVK E
Sbjct: 456 SEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLISLFTYFREAIVATEPLLDILVKGE 515
Query: 1304 NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTH 1363
+IQ R+K+GLNSKMP+RFPP +FYTPKE+GGLGM+S HILIP SDL +S+QTD G+TH
Sbjct: 516 TRIQNRVKLGLNSKMPTRFPPAVFYTPKELGGLGMISASHILIPASDLSWSKQTDTGITH 575
Query: 1364 FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSW 1423
FR+GM+HE+++LIP ++RYI WE+EF+DSQRVWAEYA KRQEA QNRRL E+LE SW
Sbjct: 576 FRAGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSW 635
Query: 1424 DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT 1483
DRGIPRI+TLFQ+DRHTLAYD+G R+R +FKQY + + +PFWWT+ HDGKLWNLN YRT
Sbjct: 636 DRGIPRISTLFQRDRHTLAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRT 695
Query: 1484 DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR 1543
DVIQALGG+E ILEHTLFKGT F +WEGLFWEKASGFE+SM++KKLT+AQR+GL+QIPNR
Sbjct: 696 DVIQALGGIETILEHTLFKGTGFNSWEGLFWEKASGFEDSMQFKKLTHAQRTGLSQIPNR 755
Query: 1544 RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD 1603
RFTLWWSPTINRANVYVGF VQLDLTGIF+HGKIPTLKISLIQIFRAHLWQKIHES+V D
Sbjct: 756 RFTLWWSPTINRANVYVGFLVQLDLTGIFLHGKIPTLKISLIQIFRAHLWQKIHESIVFD 815
Query: 1604 LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMF 1663
+CQ+LD ELD L+IE+V KET+HPRKSYKMNSS ADI + + H W +SKPSL+ E+ D F
Sbjct: 816 ICQILDGELDVLQIESVTKETVHPRKSYKMNSSAADITMESVHEWEVSKPSLLHETNDSF 875
Query: 1664 DQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLH 1723
+NK W DVQLR+GDYDSHDI RY RAKF+DYTTDN+S+YPSPTGVMIG+DLAYN++
Sbjct: 876 KGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDNVSMYPSPTGVMIGIDLAYNMY 935
Query: 1724 SAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF 1783
A+GNWF G KPL+ +M IMK+NPALYVLRERIRKGLQ+Y S EP+L+S NY E+F
Sbjct: 936 DAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSSNYAELF 995
Query: 1784 SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR 1843
+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK+IHTSVWAGQKR
Sbjct: 996 NNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKR 1055
Query: 1844 LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP 1903
L QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK MLDPLEVH+LDFPNI I+ +EL+LP
Sbjct: 1056 LSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLP 1115
Query: 1904 FQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKM 1963
F A + I+K D+++KATEPQMVLFNIYDDWL ISSYTAFSRL L+LRAL N E AKM
Sbjct: 1116 FSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKM 1175
Query: 1964 LLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIIL 2023
+L D TI + +H+WPS +D+QW+ +E +RDLIL++Y +K NVN SALTQ+EI+DIIL
Sbjct: 1176 ILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISALTQTEIKDIIL 1235
Query: 2024 GAEITPPSQQRQQIAEIEKQAKE-------ASQLTAVTTKTTNVHGDELIVTTTSPYEQA 2076
G I PS +RQ++AE+E E A T + TKT N G+E++V ++ YE
Sbjct: 1236 GQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIVVVASADYESQ 1295
Query: 2077 AFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIS 2136
F SK +WR AI+ T LYLR+ +IYV+++D E Y++PKN+LKKFI I+D++ Q++
Sbjct: 1296 TFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVA 1355
Query: 2137 GYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND---LEPLGWMHTQP 2193
++YG+S D+P+VKEI+ + + PQ G V + S +P+ L D LE LGW+HTQ
Sbjct: 1356 AFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQT 1414
Query: 2194 NELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNK 2253
EL ++ ++ +H+++ + K+ CI ++ TPGS SL+AY LT GY+WG NK
Sbjct: 1415 EELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENK 1470
Query: 2254 DTGSN-PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTP 2312
D + G+ PT Q+LLSDR G +++P WNY FMG Y K G P
Sbjct: 1471 DIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIP 1530
Query: 2313 REYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 2346
E+Y+E HRP HFL+FS L E E ++ D FS
Sbjct: 1531 LEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 1564
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
Length = 1531
Score = 2029 bits (5256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/1534 (62%), Positives = 1191/1534 (77%), Gaps = 18/1534 (1%)
Query: 824 VHWLESRKFAPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN 883
V WLESR F+PIPFPPL+YK+DTK+L+LALE LK+ Y+ VRLN +REEL LIE+AYDN
Sbjct: 5 VEWLESRSFSPIPFPPLTYKNDTKILVLALEDLKDVYASKVRLNASEREELALIEEAYDN 64
Query: 884 PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR 943
PH+ L+RIK++LLTQR FK V I M+ Y + PVY ++PLEKITDAYLDQYLWYE D+R
Sbjct: 65 PHDTLNRIKKYLLTQRVFKPVDITMMENYQNISPVYSVDPLEKITDAYLDQYLWYEADQR 124
Query: 944 HLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDXXXX 1003
LFPNWIKP+DSE PPLLVYKW QGINNL IWD S GQ V+L+T + EKID
Sbjct: 125 KLFPNWIKPSDSEIPPLLVYKWTQGINNLSEIWDVSRGQSAVLLETTLGEMAEKIDFTLL 184
Query: 1004 XXXXXXXXDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYXXXXXXXXX 1063
D NIADY+TAKNNVV+++KDMSH N YGLIRGL+FASF+ QYY
Sbjct: 185 NRLLRLIVDPNIADYITAKNNVVINFKDMSHVNKYGLIRGLKFASFIFQYYGLVIDLLLL 244
Query: 1064 XXTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRY 1123
RA+++AGP + PNEF+ + +VE HPIRLY+RY+D++++LF F +E +L Y
Sbjct: 245 GQERATDLAGPANNPNEFMQFKSKEVEKAHPIRLYTRYLDRIYMLFHFEEDEGEELTDEY 304
Query: 1124 LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS 1183
L E+PDPN EN +GYNN+KCWP+D+RMRL++ DVNLGR+VFW++++R+P S+T+++WEN+
Sbjct: 305 LAENPDPNFENSIGYNNRKCWPKDSRMRLIRQDVNLGRAVFWEIQSRVPTSLTSIKWENA 364
Query: 1184 FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRV 1243
FVSVYSK+NPNLLFSMCGFEVRILP+ RM +E SN +GVW+L +E+TK+RTA A+L+V
Sbjct: 365 FVSVYSKNNPNLLFSMCGFEVRILPRQRM-EEVVSND-EGVWDLVDERTKQRTAKAYLKV 422
Query: 1244 DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE 1303
+E +K F++R+R ILM+SGSTTFTK+ KWNT+LI L TYFREA V T+ LLD+LVK E
Sbjct: 423 SEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLISLFTYFREAIVATEPLLDILVKGE 482
Query: 1304 NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTH 1363
+IQ R+K+GLNSKMP+RFPP +FYTPKE+GGLGM+S HILIP SDL +S+QTD G+TH
Sbjct: 483 TRIQNRVKLGLNSKMPTRFPPAVFYTPKELGGLGMISASHILIPASDLSWSKQTDTGITH 542
Query: 1364 FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSW 1423
FR+GM+HE+++LIP ++RYI WE+EF+DSQRVWAEYA KRQEA QNRRL E+LE SW
Sbjct: 543 FRAGMTHEDEKLIPTIFRYITTWENEFLDSQRVWAEYATKRQEAIQQNRRLAFEELEGSW 602
Query: 1424 DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT 1483
DRGIPRI+TLFQ+DRHTLAYD+G R+R +FKQY + + +PFWWT+ HDGKLWNLN YRT
Sbjct: 603 DRGIPRISTLFQRDRHTLAYDRGHRIRREFKQYSLERNSPFWWTNSHHDGKLWNLNAYRT 662
Query: 1484 DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR 1543
DVIQALGG+E ILEHTLFKGT F +WEGLFWEKASGFE+SM++KKLT+AQR+GL+QIPNR
Sbjct: 663 DVIQALGGIETILEHTLFKGTGFNSWEGLFWEKASGFEDSMQFKKLTHAQRTGLSQIPNR 722
Query: 1544 RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD 1603
RFTLWWSPTINRANVYVGF VQLDLTGIF+HGKIPTLKISLIQIFRAHLWQKIHES+V D
Sbjct: 723 RFTLWWSPTINRANVYVGFLVQLDLTGIFLHGKIPTLKISLIQIFRAHLWQKIHESIVFD 782
Query: 1604 LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMF 1663
+CQ+LD ELD L+IE+V KET+HPRKSYKMNSS ADI + + H W +SKPSL+ E+ D F
Sbjct: 783 ICQILDGELDVLQIESVTKETVHPRKSYKMNSSAADITMESVHEWEVSKPSLLHETNDSF 842
Query: 1664 DQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLH 1723
+NK W DVQLR+GDYDSHDI RY RAKF+DYTTDN+S+YPSPTGVMIG+DLAYN++
Sbjct: 843 KGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDNVSMYPSPTGVMIGIDLAYNMY 902
Query: 1724 SAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF 1783
A+GNWF G KPL+ +M IMK+NPALYVLRERIRKGLQ+Y S EP+L+S NY E+F
Sbjct: 903 DAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSSNYAELF 962
Query: 1784 SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR 1843
+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK+IHTSVWAGQKR
Sbjct: 963 NNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKR 1022
Query: 1844 LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP 1903
L QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK MLDPLEVH+LDFPNI I+ +E +LP
Sbjct: 1023 LSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTENRLP 1082
Query: 1904 FQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKM 1963
F A + I+K D+++KATEPQMVLFNIYDDWL +SSYTAFSRL L+LRAL N E AKM
Sbjct: 1083 FSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRLSSYTAFSRLTLLLRALKTNEESAKM 1142
Query: 1964 LLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIIL 2023
+L D TI + +H+WPS +D+QW+ +E +RDLIL++Y +K NVN SALTQ+EI+DIIL
Sbjct: 1143 ILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISALTQTEIKDIIL 1202
Query: 2024 GAEITPPSQQRQQIAEIEKQAKE-------ASQLTAVTTKTTNVHGDELIVTTTSPYEQA 2076
G I PS +RQ++AE+E E A T + TKT N G+E++V ++ YE
Sbjct: 1203 GQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIVVVASADYESQ 1262
Query: 2077 AFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIS 2136
F SK +WR AI+ T LYLR+ +IYV+++D E Y++PKN+LKKFI I+D++ Q++
Sbjct: 1263 TFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVA 1322
Query: 2137 GYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND---LEPLGWMHTQP 2193
++YG+S D+P+VKEI+ + + PQ G V + S +P+ L D LE LGW+HTQ
Sbjct: 1323 AFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQT 1381
Query: 2194 NELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNK 2253
EL ++ ++ +H+++ + K+ CI ++ TPGS SL+AY LT GY+WG NK
Sbjct: 1382 EELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENK 1437
Query: 2254 DTGSN-PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTP 2312
D + G+ PT Q+LLSDR G +++P WNY FMG Y K G P
Sbjct: 1438 DIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIP 1497
Query: 2313 REYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 2346
E+Y+E HRP HFL+FS L E E ++ D FS
Sbjct: 1498 LEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 1531
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment
Length = 565
Score = 630 bits (1625), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/567 (53%), Positives = 399/567 (70%), Gaps = 16/567 (2%)
Query: 1774 LSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVI 1833
++S NY E+F+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK+I
Sbjct: 3 MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKII 62
Query: 1834 HTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNI 1893
HTSVWAGQKRL QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK MLDPLEVH+LDFPNI
Sbjct: 63 HTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNI 122
Query: 1894 VIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRA 1953
I+ +EL+LPF A + I+K D+++KATEPQMVLFNIYDDWL ISSYTAFSRL L+LRA
Sbjct: 123 AIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLRA 182
Query: 1954 LHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSAL 2013
L N E AKM+L D TI + +H+WPS +D+QW+ +E +RDLIL++Y +K NVN SAL
Sbjct: 183 LKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISAL 242
Query: 2014 TQSEIRDIILGAEITPPSQQRQQIAEIEKQAKE-------ASQLTAVTTKTTNVHGDELI 2066
TQ+EI+DIILG I PS +RQ++AE+E E A T + TKT N G+E++
Sbjct: 243 TQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIV 302
Query: 2067 VTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFI 2126
V ++ YE F SK +WR AI+ T LYLR+ +IYV+++D E Y++PKN+LKKFI
Sbjct: 303 VVASADYESQTFSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFI 362
Query: 2127 CIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND---L 2183
I+D++ Q++ ++YG+S D+P+VKEI+ + + PQ G V + S +P+ L D L
Sbjct: 363 EISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGL 421
Query: 2184 EPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTP 2243
E LGW+HTQ EL ++ ++ +H+++ + K+ CI ++ TPGS SL+AY LT
Sbjct: 422 ELLGWIHTQTEELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTD 477
Query: 2244 SGYEWGRVNKDTGSN-PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVS 2302
GY+WG NKD + G+ PT Q+LLSDR G +++P WNY FMG
Sbjct: 478 EGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQE 537
Query: 2303 MKYGVKLGTPREYYHEDHRPTHFLEFS 2329
Y K G P E+Y+E HRP HFL+FS
Sbjct: 538 GDYNFKYGIPLEFYNEMHRPVHFLQFS 564
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016
Length = 257
Score = 493 bits (1268), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/257 (90%), Positives = 252/257 (98%)
Query: 1771 EPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL 1830
EPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL
Sbjct: 1 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFL 60
Query: 1831 KVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDF 1890
K+IHTSVWAGQKRLGQLAKWKTAEEVAAL+RSLPVEEQPKQIIVTRKGMLDPLEVHLLDF
Sbjct: 61 KIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDF 120
Query: 1891 PNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILI 1950
PNIVIKGSELQLPFQACLK+EKFGDLILKATEPQMVLFN+YDDWLK+ISSYTAFSRLILI
Sbjct: 121 PNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILI 180
Query: 1951 LRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNT 2010
LRALHVNN++AK++LKPDKT ITEPHHIWP+L+D++W+KVEV L+DLIL+DY KKNNVN
Sbjct: 181 LRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNV 240
Query: 2011 SALTQSEIRDIILGAEI 2027
++LTQSEIRDIILG EI
Sbjct: 241 ASLTQSEIRDIILGMEI 257
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv
pdb|3ENB|B Chain B, Crystal Structure Of Prp8 Core Domain Iv
Length = 222
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/222 (91%), Positives = 220/222 (99%)
Query: 1780 GEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWA 1839
GE+FSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK+IHTSVWA
Sbjct: 1 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA 60
Query: 1840 GQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSE 1899
GQKRLGQLAKWKTAEEVAAL+RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSE
Sbjct: 61 GQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSE 120
Query: 1900 LQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNE 1959
LQLPFQACLK+EKFGDLILKATEPQMVLFN+YDDWLK+ISSYTAFSRLILILRALHVNN+
Sbjct: 121 LQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNND 180
Query: 1960 KAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSD 2001
+AK++LKPDKT ITEPHHIWP+L+D++W+KVEV L+DLIL+D
Sbjct: 181 RAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 222
>pdb|2P87|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans
Pre-Mrna Splicing Factor Prp8
Length = 273
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 187/272 (68%), Positives = 228/272 (83%), Gaps = 1/272 (0%)
Query: 2076 AAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQI 2135
A+F S+T+WRVRAIS+TNL+LR HIYVNS+D+K+TGYTYI+PKNILKKFI I+DLRTQI
Sbjct: 2 ASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQI 61
Query: 2136 SGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNE 2195
+G++YG+SPPDNPQVKEIRCI + PQ G+HQQV+LP+ LP+H+ L D EPLGWMHTQPNE
Sbjct: 62 AGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNE 121
Query: 2196 LPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDT 2255
LPQLSPQD+T+HA++L +N WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D
Sbjct: 122 LPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDK 181
Query: 2256 GSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREY 2315
G+NP GY+PTHYEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L P+EY
Sbjct: 182 GNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEY 241
Query: 2316 YHEDHRPTHFLEFSNLEEG-EMAEGDREDTFS 2346
YHEDHRP HF F ++ DRED F+
Sbjct: 242 YHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 273
>pdb|2P8R|A Chain A, Crystal Structure Of The C-Terminal Domain Of C. Elegans
Pre-Mrna Splicing Factor Prp8 Carrying R2303k Mutant
Length = 273
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 186/272 (68%), Positives = 228/272 (83%), Gaps = 1/272 (0%)
Query: 2076 AAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQI 2135
A+F S+T+WRVRAIS+TNL+LR HIYVNS+D+K+TGYTYI+PKNILKKFI I+DLRTQI
Sbjct: 2 ASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQI 61
Query: 2136 SGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNE 2195
+G++YG+SPPDNPQVKEIRCI + PQ G+HQQV+LP+ LP+H+ L D EPLGWMHTQPNE
Sbjct: 62 AGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNE 121
Query: 2196 LPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDT 2255
LPQLSPQD+T+HA++L +N WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D
Sbjct: 122 LPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDK 181
Query: 2256 GSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREY 2315
G+NP GY+PTHYEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L P+EY
Sbjct: 182 GNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEY 241
Query: 2316 YHEDHRPTHFLEFSNLEEG-EMAEGDREDTFS 2346
YHEDH+P HF F ++ DRED F+
Sbjct: 242 YHEDHKPVHFHNFKAFDDPLGTGSADREDAFA 273
>pdb|3E66|A Chain A, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8
pdb|3E66|B Chain B, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8
Length = 282
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/274 (68%), Positives = 224/274 (81%)
Query: 1761 GLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFI 1820
GLQ+Y S EP+L+S NY E+F+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF
Sbjct: 9 GLQIYQSSVQEPFLNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFT 68
Query: 1821 FNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGML 1880
NP+TG LFLK+IHTSVWAGQKRL QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK ML
Sbjct: 69 LNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAML 128
Query: 1881 DPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISS 1940
DPLEVH+LDFPNI I+ +EL+LPF A + I+K D+++KATEPQMVLFNIYDDWL ISS
Sbjct: 129 DPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISS 188
Query: 1941 YTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILS 2000
YTAFSRL L+LRAL N E AKM+L D TI + +H+WPS +D+QW+ +E +RDLIL+
Sbjct: 189 YTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILT 248
Query: 2001 DYAKKNNVNTSALTQSEIRDIILGAEITPPSQQR 2034
+Y +K NVN SALTQ+EI+DIILG I PS +R
Sbjct: 249 EYGRKYNVNISALTQTEIKDIILGQNIKAPSVKR 282
>pdb|3SBT|A Chain A, Crystal Structure Of A Aar2-prp8 Complex
Length = 260
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/258 (69%), Positives = 213/258 (82%)
Query: 1774 LSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVI 1833
++S NY E+F+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK+I
Sbjct: 3 MNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKII 62
Query: 1834 HTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNI 1893
HTSVWAGQKRL QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK MLDPLEVH+LDFPNI
Sbjct: 63 HTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNI 122
Query: 1894 VIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRA 1953
I+ +EL+LPF A + I+K D+++KATEPQMVLFNIYDDWL ISSYTAFSRL L+LRA
Sbjct: 123 AIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLRA 182
Query: 1954 LHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSAL 2013
L N E AKM+L D TI + +H+WPS +D+QW+ +E +RDLIL++Y +K NVN SAL
Sbjct: 183 LKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISAL 242
Query: 2014 TQSEIRDIILGAEITPPS 2031
TQ+EI+DIILG I PS
Sbjct: 243 TQTEIKDIILGQNIKAPS 260
>pdb|3E9P|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1827-2092
pdb|3E9P|B Chain B, Crystal Structure Of Yeast Prp8, Residues 1827-2092
Length = 255
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/253 (70%), Positives = 212/253 (83%)
Query: 1772 PYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLK 1831
P+L+S NY E+F+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK
Sbjct: 1 PFLNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLK 60
Query: 1832 VIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 1891
+IHTSVWAGQKRL QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK MLDPLEVH+LDFP
Sbjct: 61 IIHTSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFP 120
Query: 1892 NIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILIL 1951
NI I+ +EL+LPF A + I+K D+++KATEPQMVLFNIYDDWL ISSYTAFSRL L+L
Sbjct: 121 NIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLL 180
Query: 1952 RALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTS 2011
RAL N E AKM+L D TI + +H+WPS +D+QW+ +E +RDLIL++Y +K NVN S
Sbjct: 181 RALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNIS 240
Query: 2012 ALTQSEIRDIILG 2024
ALTQ+EI+DIILG
Sbjct: 241 ALTQTEIKDIILG 253
>pdb|3E9O|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1836-2092
Length = 258
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/250 (69%), Positives = 202/250 (80%)
Query: 1775 SSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIH 1834
+S NY E+F+N I FVDDTNVYRVT+HKTFEGN+ TK ING IF NP+TG LFLK+IH
Sbjct: 7 NSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIH 66
Query: 1835 TSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIV 1894
TSVWAGQKRL QLAKWKTAEEV+ALVRSLP EEQPKQIIVTRK LDPLEVH LDFPNI
Sbjct: 67 TSVWAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAXLDPLEVHXLDFPNIA 126
Query: 1895 IKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRAL 1954
I+ +EL+LPF A I+K D++ KATEPQ VLFNIYDDWL ISSYTAFSRL L+LRAL
Sbjct: 127 IRPTELRLPFSAAXSIDKLSDVVXKATEPQXVLFNIYDDWLDRISSYTAFSRLTLLLRAL 186
Query: 1955 HVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALT 2014
N E AK +L D TI + +H+WPS +D+QW+ +E RDLIL++Y +K NVN SALT
Sbjct: 187 KTNEESAKXILLSDPTITIKSYHLWPSFTDEQWITIESQXRDLILTEYGRKYNVNISALT 246
Query: 2015 QSEIRDIILG 2024
Q+EI+DIILG
Sbjct: 247 QTEIKDIILG 256
>pdb|3LRU|A Chain A, Hprp8 Non-Native Subdomain
pdb|3LRU|B Chain B, Hprp8 Non-Native Subdomain
Length = 160
Score = 301 bits (772), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/160 (89%), Positives = 158/160 (98%)
Query: 1842 KRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQ 1901
KRLGQLAKWKTAEEVAAL+RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQ
Sbjct: 1 KRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQ 60
Query: 1902 LPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKA 1961
LPFQACLK+EKFGDLILKATEPQMVLFN+YDDWLK+ISSYTAFSRLILILRALHVNN++A
Sbjct: 61 LPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRA 120
Query: 1962 KMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSD 2001
K++LKPDKT ITEPHHIWP+L+D++W+KVEV L+DLIL+D
Sbjct: 121 KVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 160
>pdb|2OG4|A Chain A, Structure Of An Expanded Jab1-mpn-like Domain Of Splicing
Factor Prp8p From Yeast
Length = 254
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 159/258 (61%), Gaps = 9/258 (3%)
Query: 2076 AAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQI 2135
A SK +WR AI+ T LYLR+ +IYV+++D E Y++PKN+LKKFI I+D++ Q+
Sbjct: 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQV 60
Query: 2136 SGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLND---LEPLGWMHTQ 2192
+ ++YG+S D+P+VKEI+ + + PQ G V + S +P+ L D LE LGW+HTQ
Sbjct: 61 AAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQ 119
Query: 2193 PNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVN 2252
EL ++ ++ +H+++ + K+ CI ++ TPGS SL+AY LT GY+WG N
Sbjct: 120 TEELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEEN 175
Query: 2253 KDTGSN-PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGT 2311
KD + G+ PT Q+LLSDR G +++P WNY FMG Y K G
Sbjct: 176 KDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGI 235
Query: 2312 PREYYHEDHRPTHFLEFS 2329
P E+Y+E HRP HFL+FS
Sbjct: 236 PLEFYNEMHRPVHFLQFS 253
>pdb|2ZNV|A Chain A, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|D Chain D, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
Length = 178
Score = 36.2 bits (82), Expect = 0.22, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 2181 NDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYK 2240
+DL LGW+HT P + LS DL +H + Q + I + CS P ++
Sbjct: 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHC-----SYQLMLPEAIAIVCS--PKHKDTGIFR 132
Query: 2241 LTPSGYEWGRVNKDTGSNPHGYLP 2264
LT +G K G +PH P
Sbjct: 133 LTNAGMLEVSACKKKGFHPHTKEP 156
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp
Length = 178
Score = 36.2 bits (82), Expect = 0.22, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 2181 NDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYK 2240
+DL LGW+HT P + LS DL +H + Q + I + CS P ++
Sbjct: 80 HDLLTLGWIHTHPTQTAFLSSVDLHTHC-----SYQLMLPEAIAIVCS--PKHKDTGIFR 132
Query: 2241 LTPSGYEWGRVNKDTGSNPHGYLP 2264
LT +G K G +PH P
Sbjct: 133 LTNAGMLEVSACKKKGFHPHTKEP 156
>pdb|3RZV|A Chain A, The Crystal Structure Of A E280a Mutant Of The Catalytic
Domain Of Amsh
Length = 211
Score = 33.9 bits (76), Expect = 0.97, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 2186 LGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 2245
LGW+HT P + LS DL +H + Q + + + CS P +KLT G
Sbjct: 118 LGWIHTHPTQTAFLSSVDLHTHC-----SYQMMLPESVAIVCS--PKFQETGFFKLTDHG 170
Query: 2246 YEWGRVNKDTGSNPHGYLP 2264
E + G +PH P
Sbjct: 171 LEEISSCRQKGFHPHSKDP 189
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|B Chain B, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|C Chain C, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|D Chain D, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|E Chain E, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|F Chain F, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|G Chain G, The Crystal Structure Of The Catalytic Domain Of Amsh
Length = 187
Score = 33.9 bits (76), Expect = 0.97, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 2186 LGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSG 2245
LGW+HT P + LS DL +H + Q + + + CS P +KLT G
Sbjct: 94 LGWIHTHPTQTAFLSSVDLHTHC-----SYQMMLPESVAIVCS--PKFQETGFFKLTDHG 146
Query: 2246 YEWGRVNKDTGSNPHGYLP 2264
E + G +PH P
Sbjct: 147 LEEISSCRQKGFHPHSKDP 165
>pdb|3NZT|A Chain A, 2.0 Angstrom Crystal Structure Of Glutamate--Cysteine Ligase
(Gsha) Ftom Francisella Tularensis In Complex With Amp
Length = 525
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 27/127 (21%)
Query: 2040 IEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPY-------EQAAFGSKTDWRVRAISAT 2092
I+K E QL+A T N+H DE+I+ T+ P ++A FGS R++ +
Sbjct: 87 IDKAIGELYQLSAFTL--DNMHSDEIILNTSMPLSANDNDIQEADFGSSNSGRMKRVYRK 144
Query: 2093 NLYLRVNHIYVNSEDIKETGYTYIMPKNILK-----KFICIADLRTQISG---------- 2137
L R I + I Y + K+++ K + I+D+ +
Sbjct: 145 GLSARYGKIM---QIISGIHYNFSFDKDLISNIATNKQVSISDIYFDVLNNYFEFMWLLP 201
Query: 2138 YLYGISP 2144
YL+G SP
Sbjct: 202 YLFGASP 208
>pdb|4DI3|D Chain D, Crystal Structure Of A 2:1 Complex Of Treponema Pallidum
Tatp(T) (Tp0957) Bound To Tatt (Tp0956)
pdb|4DI3|E Chain E, Crystal Structure Of A 2:1 Complex Of Treponema Pallidum
Tatp(T) (Tp0957) Bound To Tatt (Tp0956)
pdb|4DI4|B Chain B, Crystal Structure Of A 3:1 Complex Of Treponema Pallidum
Tatp(T) (Tp0957) Bound To Tatt (Tp0956)
Length = 324
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 23/152 (15%)
Query: 1185 VSVYSKDNPNL--LFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLR 1242
+++ S D+ L F +CGF+++ P +R+ + + DG ++ A F R
Sbjct: 154 IALSSLDSSVLGTCFRICGFDIKDAPNVRLAPLLKAGSIDGFLSVHLFT----WATGFYR 209
Query: 1243 VDDEHMKV-FENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVK 1301
+ V +L+S GS + +I ++++ A++ T R+ + E LD +
Sbjct: 210 YISYALDTKICPAVIGMLISDGS--WARIPSRYHDAMLQAATRVRQRLANNLETLDR--E 265
Query: 1302 CENKIQTRIKIGLNSKMPSRFPPVIFYTPKEI 1333
C N IQ K G++ ++ TP+EI
Sbjct: 266 CSNNIQ---KAGVS---------IVHLTPQEI 285
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 1167 MKNRLPRSITTLEWENSFVSV---YSKDNPNLLFSMCGFEVR--ILPKIRMTQEAFSNTR 1221
M+ +LP +TT E SV Y KD + + +++R +LP + + +
Sbjct: 154 MRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESV- 212
Query: 1222 DGVWNLQNEQTKERTAVAF-LRVDDEHMKV----FENRVRQILM--SSGSTTFTKIVNKW 1274
G+ +LQ+ R V L D H V F N + Q + S G+ + T + KW
Sbjct: 213 -GLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKW 271
Query: 1275 NTALIG 1280
N +IG
Sbjct: 272 NPCVIG 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,822,486
Number of Sequences: 62578
Number of extensions: 3069220
Number of successful extensions: 6684
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6649
Number of HSP's gapped (non-prelim): 26
length of query: 2346
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2231
effective length of database: 7,776,867
effective search space: 17350190277
effective search space used: 17350190277
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)