Query 042625
Match_columns 2346
No_of_seqs 148 out of 209
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1795 U5 snRNP spliceosome s 100.0 0E+00 0E+00 8659.8 151.9 2285 46-2345 26-2321(2321)
2 COG5178 PRP8 U5 snRNP spliceos 100.0 0E+00 0E+00 7980.2 144.9 2328 9-2346 7-2365(2365)
3 PF08083 PROCN: PROCN (NUC071) 100.0 5E-203 1E-207 1717.9 33.3 408 403-811 1-408 (408)
4 PF12134 PRP8_domainIV: PRP8 d 100.0 1E-108 3E-113 894.2 19.2 231 1771-2001 1-231 (231)
5 cd08056 MPN_PRP8 Mpr1p, Pad1p 100.0 2.8E-90 6.1E-95 774.6 22.8 251 2078-2328 1-252 (252)
6 PF10596 U6-snRNA_bdg: U6-snRN 100.0 3.7E-91 8E-96 724.7 5.7 160 1453-1612 1-160 (160)
7 PF08082 PRO8NT: PRO8NT (NUC06 100.0 6.8E-81 1.5E-85 646.0 10.4 152 77-228 1-152 (152)
8 PF10597 U5_2-snRNA_bdg: U5-sn 100.0 8.9E-69 1.9E-73 546.8 11.0 134 1221-1354 2-135 (135)
9 PF08084 PROCT: PROCT (NUC072) 100.0 1.6E-48 3.5E-53 400.0 8.7 124 2222-2345 1-125 (125)
10 PF10598 RRM_4: RNA recognitio 100.0 3.8E-44 8.1E-49 348.0 6.3 93 996-1088 1-93 (93)
11 cd08066 MPN_AMSH_like Mov34/MP 99.9 1.2E-24 2.5E-29 235.7 15.3 163 2113-2285 2-171 (173)
12 COG5178 PRP8 U5 snRNP spliceos 99.8 2.8E-18 6E-23 212.5 15.7 626 74-903 215-957 (2365)
13 KOG2880 SMAD6 interacting prot 99.6 1.2E-16 2.7E-21 185.0 2.2 129 2112-2250 251-386 (424)
14 cd07767 MPN Mpr1p, Pad1p N-ter 99.0 2.4E-10 5.3E-15 113.9 5.4 103 2122-2232 1-107 (116)
15 smart00232 JAB_MPN JAB/MPN dom 98.9 1.1E-09 2.5E-14 111.3 3.9 120 2117-2244 8-135 (135)
16 cd08069 MPN_RPN11_CSN5 Mov34/M 98.3 2.1E-06 4.6E-11 100.2 11.1 126 2113-2247 10-150 (268)
17 cd08061 MPN_NPL4 Mov34/MPN/PAD 98.3 2.2E-06 4.8E-11 100.4 9.7 137 2115-2252 14-168 (274)
18 KOG1795 U5 snRNP spliceosome s 98.2 7.3E-07 1.6E-11 114.8 2.1 118 73-199 183-300 (2321)
19 PF01398 JAB: JAB1/Mov34/MPN/P 98.1 2.5E-06 5.4E-11 86.5 4.7 102 2112-2215 3-113 (114)
20 cd08067 MPN_2A_DUB Mov34/MPN/P 98.0 2.9E-05 6.3E-10 86.9 10.5 127 2113-2245 5-148 (187)
21 PF05021 NPL4: NPL4 family; I 97.8 5.8E-05 1.3E-09 90.0 9.3 115 2136-2252 2-151 (306)
22 cd08058 MPN_euk_mb Mpr1p, Pad1 97.8 2.8E-05 6E-10 80.3 5.5 105 2130-2242 13-119 (119)
23 cd08068 MPN_BRCC36 Mov34/MPN/P 97.1 0.0023 4.9E-08 74.8 10.3 124 2115-2244 4-152 (244)
24 cd01709 RT_like_1 RT_like_1: A 96.9 0.041 8.8E-07 67.3 18.8 117 983-1126 21-144 (346)
25 KOG1924 RhoA GTPase effector D 96.3 0.0027 5.9E-08 81.5 3.6 19 101-120 701-719 (1102)
26 cd08065 MPN_eIF3h Mpr1p, Pad1p 96.2 0.016 3.6E-07 68.2 9.5 126 2115-2250 3-143 (266)
27 KOG1924 RhoA GTPase effector D 96.0 0.0053 1.2E-07 79.1 3.9 7 127-133 713-719 (1102)
28 cd08070 MPN_like Mpr1p, Pad1p 95.9 0.02 4.3E-07 60.2 7.1 108 2120-2243 2-120 (128)
29 cd01651 RT_G2_intron RT_G2_int 95.6 0.17 3.6E-06 56.0 13.4 183 914-1126 11-199 (226)
30 KOG2834 Nuclear pore complex, 95.3 0.045 9.8E-07 68.1 8.2 127 2118-2246 181-343 (510)
31 cd03487 RT_Bac_retron_II RT_Ba 95.0 0.095 2.1E-06 59.2 9.0 107 984-1126 57-169 (214)
32 cd08057 MPN_euk_non_mb Mpr1p, 93.6 0.39 8.4E-06 52.5 9.8 112 2120-2245 10-138 (157)
33 cd01646 RT_Bac_retron_I RT_Bac 92.5 0.19 4.2E-06 54.3 5.5 107 990-1126 2-115 (158)
34 COG1310 Predicted metal-depend 91.5 0.54 1.2E-05 50.2 7.4 109 2115-2239 2-116 (134)
35 cd01650 RT_nLTR_like RT_nLTR: 91.0 0.87 1.9E-05 50.5 8.6 95 981-1127 79-176 (220)
36 cd08064 MPN_eIF3f Mpr1p, Pad1p 90.4 0.99 2.2E-05 53.5 8.9 111 2120-2246 10-134 (265)
37 cd08072 MPN_archaeal Mov34/MPN 88.2 3.5 7.7E-05 43.8 10.1 101 2117-2241 1-107 (117)
38 KOG2675 Adenylate cyclase-asso 87.9 0.44 9.4E-06 59.7 3.7 23 13-35 228-250 (480)
39 PF00078 RVT_1: Reverse transc 84.2 0.77 1.7E-05 49.9 2.9 119 980-1126 60-188 (214)
40 cd08063 MPN_CSN6 Mpr1p, Pad1p 81.6 6.4 0.00014 47.5 9.4 111 2120-2246 12-142 (288)
41 PRK09752 adhesin; Provisional 79.8 1.2 2.6E-05 61.5 2.8 9 346-354 1180-1188(1250)
42 cd08062 MPN_RPN7_8 Mpr1p, Pad1 79.6 3.6 7.8E-05 49.7 6.5 112 2120-2246 12-138 (280)
43 KOG1554 COP9 signalosome, subu 79.4 2.3 5E-05 51.3 4.7 108 2129-2246 71-193 (347)
44 PF14464 Prok-JAB: Prokaryotic 77.9 1 2.2E-05 45.3 1.1 80 2120-2209 3-85 (104)
45 PRK09752 adhesin; Provisional 76.7 1.6 3.4E-05 60.4 2.6 11 284-294 1106-1116(1250)
46 KOG2675 Adenylate cyclase-asso 75.6 2.6 5.6E-05 53.3 3.8 23 281-315 434-458 (480)
47 TIGR02256 ICE_VC0181 integrati 70.2 11 0.00025 41.5 6.7 90 2120-2213 4-103 (131)
48 PF01690 PLRV_ORF5: Potato lea 68.5 3.4 7.4E-05 52.8 2.7 22 269-291 192-213 (465)
49 PRK14849 putative lipoprotein/ 66.1 4.7 0.0001 58.1 3.6 14 284-297 1645-1658(1806)
50 KOG3671 Actin regulatory prote 65.9 5.1 0.00011 51.5 3.4 6 49-54 498-503 (569)
51 COG5100 NPL4 Nuclear pore prot 65.0 11 0.00023 47.6 5.7 126 2118-2246 240-402 (571)
52 KOG1555 26S proteasome regulat 64.0 4.6 0.0001 49.7 2.6 104 2135-2241 56-171 (316)
53 TIGR03735 PRTRC_A PRTRC system 59.5 19 0.00041 42.1 6.2 81 2116-2205 74-156 (192)
54 KOG1925 Rac1 GTPase effector F 58.6 8.2 0.00018 49.5 3.4 72 732-811 738-815 (817)
55 cd08073 MPN_NLPC_P60 Mpr1p, Pa 54.3 34 0.00074 36.2 6.6 22 2184-2205 60-81 (108)
56 cd08059 MPN_prok_mb Mpr1p, Pad 54.0 22 0.00047 36.3 5.0 66 2132-2210 15-83 (101)
57 cd01648 TERT TERT: Telomerase 52.2 39 0.00084 35.8 6.6 64 1033-1120 13-76 (119)
58 KOG1922 Rho GTPase effector BN 52.0 11 0.00024 51.3 3.3 21 113-133 500-520 (833)
59 PRK15319 AIDA autotransporter- 51.8 12 0.00025 54.4 3.5 8 345-352 1968-1975(2039)
60 PF09816 EAF: RNA polymerase I 48.6 42 0.0009 35.7 6.2 50 1788-1837 40-100 (109)
61 PLN03246 26S proteasome regula 48.0 48 0.001 41.0 7.4 110 2120-2246 17-143 (303)
62 PRK14849 putative lipoprotein/ 47.0 12 0.00027 54.2 2.7 6 349-354 1673-1678(1806)
63 PF01698 FLO_LFY: Floricaula / 46.5 6.6 0.00014 49.4 0.0 13 53-65 96-108 (386)
64 KOG0162 Myosin class I heavy c 37.8 28 0.00061 46.8 3.5 32 15-46 1033-1067(1106)
65 KOG3397 Acetyltransferases [Ge 36.1 37 0.0008 39.5 3.7 18 35-52 198-215 (225)
66 PF01690 PLRV_ORF5: Potato lea 34.7 30 0.00065 44.8 3.1 8 538-545 435-442 (465)
67 PF05924 SAMP: SAMP Motif; In 32.6 22 0.00047 28.6 0.9 11 1314-1324 10-20 (20)
68 PRK14950 DNA polymerase III su 28.3 65 0.0014 42.7 4.7 15 48-62 463-477 (585)
69 PF01698 FLO_LFY: Floricaula / 27.9 20 0.00043 45.4 0.0 21 70-90 71-91 (386)
70 KOG4849 mRNA cleavage factor I 27.8 47 0.001 41.7 3.0 6 8-13 251-256 (498)
71 PHA03211 serine/threonine kina 26.9 59 0.0013 41.8 3.9 30 505-541 264-293 (461)
72 cd00304 RT_like RT_like: Rever 25.3 2E+02 0.0044 28.5 6.4 60 1040-1126 12-72 (98)
73 KOG1314 DHHC-type Zn-finger pr 24.9 25 0.00055 44.1 0.2 51 1429-1487 232-288 (414)
74 KOG1925 Rac1 GTPase effector F 24.8 55 0.0012 42.6 2.9 14 117-130 388-401 (817)
75 PF08388 GIIM: Group II intron 24.4 1.3E+02 0.0029 29.4 4.9 63 1248-1315 1-64 (80)
76 KOG3837 Uncharacterized conser 22.7 1.5E+02 0.0032 38.6 5.9 58 9-66 163-227 (523)
77 PF00367 PTS_EIIB: phosphotran 21.0 50 0.0011 29.4 1.1 17 1483-1499 2-18 (35)
78 PF12037 DUF3523: Domain of un 20.8 1E+02 0.0022 38.1 4.0 23 12-34 3-25 (276)
79 PF04834 Adeno_E3_14_5: Early 20.6 99 0.0021 33.2 3.3 14 22-35 78-91 (97)
80 KOG1830 Wiskott Aldrich syndro 20.3 73 0.0016 41.0 2.7 24 10-33 386-413 (518)
No 1
>KOG1795 consensus U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=100.00 E-value=0 Score=8659.81 Aligned_cols=2285 Identities=88% Similarity=1.427 Sum_probs=2269.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccCCChHHHHhhhcccCCCCccccccccccccccccccHHHHHHHhhcC
Q 042625 46 EARLEEKARKWMQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENM 125 (2346)
Q Consensus 46 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~k~~mppehlrkii~~~~dms~~~~~~dkr~~lgaLky~PhAi~klLenm 125 (2346)
+.+|++|+++|.++|.|||++|+|+|+|.++|++||||||||||+ |+|+||++|||+|+||||||||||+||||||
T Consensus 26 ~~~L~~ka~k~~~~~~kr~~~k~k~~~v~t~k~~mPpeHlrkii~----m~S~k~r~dkrv~lgalky~PhaVlkLLeNm 101 (2321)
T KOG1795|consen 26 EYKLEEKARKWMQLNSKRYGEKRKFGFVDTQKEDMPPEHLRKIIR----MTSRKYRHDKRVYLGALKYMPHAVLKLLENM 101 (2321)
T ss_pred HHHhhhhhHHHHHhhhhhhhhhhhcccccccccCCCHHHHHHHhh----hhccccchhhHHhhhhhhhchHHHHHHHhcC
Confidence 567999999999999999999999999999999999999999996 9999999999999999999999999999999
Q ss_pred CCCccccceeeEEEeeeceEEeeccccccchhHHHHHHHHHHHHhhHhhhccccccccccCCCCCCCCCCCccccCCCCC
Q 042625 126 PMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVD 205 (2346)
Q Consensus 126 PmPWE~vr~V~VLYHitGAITFVnEiPrViEpvy~AQW~tmWi~MRrEKrdRrhFKRmrfPpFDDeEPpldy~dnI~dve 205 (2346)
||||||+|+|+||||+|||||||||+||||||+|+||||+||||||||||||+||||||||||||||||+||.||++|||
T Consensus 102 P~pWeqvr~vkvlyh~tGaitfvne~p~viep~y~aqwg~~wi~mrrekRdR~hFkrmrfppfddeeppl~y~~~v~~ve 181 (2321)
T KOG1795|consen 102 PMPWEQVRDVKVLYHITGAITFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVE 181 (2321)
T ss_pred CCcHHhhheeeEEEeccceEEEEecCcccccchhhhhhhhhHHHHHHHHhhhhhhhhccCCCCcccCCcchHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCccccccccccccCCCCCccccccCCCcccceecChHHHHHHHHHhhhhccccccCCcccccccccccccc
Q 042625 206 PLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAK 285 (2346)
Q Consensus 206 pleaIq~~Ld~~~d~~v~dWfYd~kpL~~~~~vng~syk~w~l~l~~m~~Lyrl~~~Llsd~~d~ny~yLFd~ksFfTaK 285 (2346)
||+|||++||+|||.+|.+||||++||++++.|||++||+|.+++|+|++|||||.||++|+.|+|||||||.+||||||
T Consensus 182 Ple~i~~~ld~e~d~~v~~w~yd~~pl~~~~~vng~tyr~w~~slP~m~~l~Rl~~~l~~d~~d~ny~ylfd~~sff~~K 261 (2321)
T KOG1795|consen 182 PLEAIQLELDPEEDRAVVDWFYDHKPLVDTKRVNGPTYRKWNLSLPMMSTLYRLANQLLSDLVDDNYFYLFDMKSFFTAK 261 (2321)
T ss_pred CcchhccCCChHHhhHHHHHHhhcCchhhccccCcHHHHhHhhcCccHHHHHHHHHHHHHHhcccceEEEecchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccccccccccCCcCCccccccccceeeccCCccceeecCCccccCCCcceeeecccccceeeeccCCCCC
Q 042625 286 ALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGIYHTPMVMYIKTEDPDL 365 (2346)
Q Consensus 286 alN~aIPgGPKFEpL~~~~~~~d~d~~efn~i~~ii~r~~irteykiafP~lYns~~r~v~~~~yh~p~~~~~~~~d~~~ 365 (2346)
|||+||||||||||||+|.... ||||||||||++|+|.||||||+|||||||||+||+|.+++||.|..||+++||||+
T Consensus 262 aln~aipggpkfEpl~~~~~~~-ed~neFndi~kvi~r~pirteyriafP~lyn~~~~~v~~~~y~~p~~~yi~~ed~dl 340 (2321)
T KOG1795|consen 262 ALNMAIPGGPKFEPLYRDLERG-EDWNEFNDINKVIIRGPIRTEYRIAFPHLYNNRPRSVCLSVYHTPDVVYIKTEDPDL 340 (2321)
T ss_pred HHhccCCCCCCccccccccccc-ccccccccccceeEecccceeeecccchhhcCCCcceeeeeecCCceEEecCCCCCc
Confidence 9999999999999999999544 999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcCCCCCCCCCC-----------CCCcccCCcccccCcCCCCCCCccccchhhcccCCCcccccCCCccccccc
Q 042625 366 PAFYYDPLIHPIPSTNKE-----------RHDDFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDI 434 (2346)
Q Consensus 366 p~f~~~~~~npi~~~~~~-----------~~~~~~lp~~~~pfl~~~~l~~~~t~~~~~l~~ap~pfn~r~g~~~ra~dv 434 (2346)
|||||||++|||..++.+ ++++|.+|+++.|++++++|++++|++|++|+|||.|||+|+|+++||+||
T Consensus 341 pa~~~dplinpi~~~~~~~e~~~~~~~~~~~ed~~lp~~~~p~~~~~~l~~~~t~n~~~l~~ap~pfn~~~gr~rra~Dv 420 (2321)
T KOG1795|consen 341 PAFYFDPLINPISHRNTNNEEVEVLEDDDEEEDFALPEDVEPLLEDTPLYTDNTANGISLLWAPRPFNRRSGRTRRAQDI 420 (2321)
T ss_pred hhhhcCcccCccccccccccccccCccccccccccCcccccchhcccccccccchhhHHhhcCCCCCccccccccccccc
Confidence 999999999999876441 346799999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCCCceehhhHhhhhhHHHhhhcCCCCCCcchhHHHHHHhccCcceEEechhHHHHHHHHHHhhhhHh
Q 042625 435 PLVSDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNML 514 (2346)
Q Consensus 435 pl~k~w~~~~~~~~~p~kvrvSyqkLLK~yv~n~l~~~~~~~~~k~~llk~lk~tkfFq~t~iDWvEaglqvcrQG~nML 514 (2346)
||+|+||+||||+++||||||||||||||||+|+||++++|+++|++|||+||+|||||+|+||||||||||||||||||
T Consensus 421 pL~k~w~leh~~~~~PvkvrvsyqkLLk~yvlN~l~~~~pk~~~~~~llrslknTkfFQ~T~iDWVEaGLQvcrQG~nML 500 (2321)
T KOG1795|consen 421 PLVKGWYLEHCPPGYPVKVRVSYQKLLKNYVLNELHHRPPKAQKKRHLLRSLKNTKFFQSTEIDWVEAGLQVCRQGYNML 500 (2321)
T ss_pred hHHHHHHHhcCCCCCCeeeeehHHHHHHHHHHhhhccCCCCCCCchhHHHHhhhcchhhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeeccccCCccccccchhhhhhccCCchhHHHHHHHHHHHHHHhhhhhhccCCCchHHHhhhhhHHhhc
Q 042625 515 NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSH 594 (2346)
Q Consensus 515 nlLIhRK~L~yLhLDyNFNLKp~KtLTTKERKKSRfGnaFHL~REilr~~KliVD~Hvq~RlGniDa~qLadgl~yiF~h 594 (2346)
|||||||||+|||||||||||||||||||||||||||||||||||||||+|+|||+||||||||||||||||||||||||
T Consensus 501 nllihRK~L~YLhLDyNfNLKP~ktLTTKERKKSR~GnafHL~REiLrl~KliVD~hVqfRlgnvDa~qLadgl~yi~nh 580 (2321)
T KOG1795|consen 501 NLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDSHVQFRLGNVDAFQLADGLQYIFNH 580 (2321)
T ss_pred HHHHHhcCCceEEeecccCcccchhhhhhhhhhhccccHHHHHHHHHHHHHHHhhhhheeeccCchHHHHhcchhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeehhhHHHHHHHhhhccchhhhccccCCCCCCCCccccccchhHHHHHHHhchhHHHHHHHhhhhHHhhhccc
Q 042625 595 VGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRH 674 (2346)
Q Consensus 595 vG~LTGiYRYKYk~m~QIr~cKdlKhliyyrfn~g~vgKgpG~gfW~P~WRVW~FFlRGiiPLLeRwL~nLlaRqfeGR~ 674 (2346)
|||||||||||||+|||||||||||||||||||+| ||||||||||+|+|||||||||||||||||||||||+||||||+
T Consensus 581 VGqLTGmYRYKYklMrQIr~CKdlKhliyYrfn~g-vgkgpgcgfW~p~WRvWlfflRG~iPLLeR~lgnLl~RqfEGR~ 659 (2321)
T KOG1795|consen 581 VGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTG-VGKGPGCGFWAPGWRVWLFFLRGIIPLLERWLGNLLARQFEGRH 659 (2321)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHhhhhccC-CCCCCCccccchhHHHHHHHHhcchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccchhHHHHHHHHHHHHHhcccccchhhHHHHHHHhHHHHhhhhcCCCccCCCCChhHHHHHHHHHH
Q 042625 675 SKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVK 754 (2346)
Q Consensus 675 s~~~~K~vTKQRveS~~Dlelra~vm~dIldm~pe~i~~~k~r~iLqHlsEAWRCWKAnipwkvpgmp~pi~~iI~rYVK 754 (2346)
++ ++|++|||||||||||||||||||||+|||||||||+||||||||||||||||||||||||||||.||||||+||||
T Consensus 660 ~~-v~Kt~tKQR~es~~DleLr~~vM~dildmmpe~i~q~kartiLQHlsEAWRCWKANiPw~vpglp~pien~ilRyvk 738 (2321)
T KOG1795|consen 660 SK-VAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVK 738 (2321)
T ss_pred cc-ccchhhhhhhhccccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHhhcCCCccCCCCcccHHHHHHHHHh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceehhhhhhhHhhhccCCeechhhhhhcchhhhHHHHHHHHHHHHhhhcCCCCcChhhHHHHHHHHHHHHhcCCCcc
Q 042625 755 SKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFAP 834 (2346)
Q Consensus 755 ~KAdww~~~a~ynReRI~rg~tVdKtv~kKNlGRlTRL~lK~EqeRQ~~ylk~gpyls~eeavaIy~~~v~WLesr~f~~ 834 (2346)
+||||||++||||||||+||||||||+||||||||||||+|+||||||+|+|||||+|+|||+|||++||||||||.|+|
T Consensus 739 skad~wt~~ahynrErirRgA~Vdkt~~kknLgRltrl~lk~eqErq~n~~k~Gp~it~eEa~~i~t~tv~wlesR~f~p 818 (2321)
T KOG1795|consen 739 SKADWWTNSAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSP 818 (2321)
T ss_pred hhhhheeccchhhHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCHHHhhHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchhHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHhcChHHHHHHHHHHHhhccccccceeeeeccccc
Q 042625 835 IPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSY 914 (2346)
Q Consensus 835 IpFP~~~yK~DtKlL~LALe~Lke~y~~~~rLn~~qrEEl~lIE~AydnphetL~rIK~~LLtqR~FKeV~ie~~d~ys~ 914 (2346)
|||||++||||||||+||||+|||+|+++.||||+||||+||||||||||||||+||||+|||||+||||||||||+|+|
T Consensus 819 ipfPpLsyk~dtklliLalE~lke~ys~k~rlnqsqrEEl~lieqAydnphe~l~rIKr~LLTqR~FKeVgi~~md~y~~ 898 (2321)
T KOG1795|consen 819 IPFPPLSYKHDTKLLILALERLKEAYSVKVRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRSFKEVGIEFMDLYSH 898 (2321)
T ss_pred CCCCCCCcccchhHHHHHHHHHHhhccccccCChHHHHHHHHHHHHhhCHHHHHHHHHHHHHhhhhhhhhCeeHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccchhhHHHHHHHHhhhhcccCCCCCCCCCCCCCCCChhHHHhhhcccccccCcccCCCCeeEEEEeehhHHH
Q 042625 915 LIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKF 994 (2346)
Q Consensus 915 l~PvY~v~plEKitDayLdqYLwYEadkr~LFP~wiKPsD~E~pPllvyKwcqgInnl~~~w~~s~ge~~vl~et~l~~~ 994 (2346)
+||||+|+|+|||||||||||||||||+|+|||+||||||+||||+|||||||||||++++||+++|||+|||||+|+++
T Consensus 899 lipvY~v~plEkitDAyLdqYLwyEaD~r~lFP~wiKP~DsE~ppll~ykwcqgInnl~~vwd~~~ge~~Vl~etk~e~i 978 (2321)
T KOG1795|consen 899 LIPVYSVEPLEKITDAYLDQYLWYEADKRHLFPNWIKPSDSEPPPLLVYKWCQGINNLQDVWDTSEGECNVLLETKFEKI 978 (2321)
T ss_pred ceeeeeccHHHHHHHHHHHHHHhhhccccccCccccCcccCCCCcchHHHHHhhhchHHHHhhcCCceeEeeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHHhcchhhhhhhhcCceEEEeeccccccccccccccchhHHHHHHHHHHHHHHHhcccccccccCC
Q 042625 995 FEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGP 1074 (2346)
Q Consensus 995 ~ekiD~tlLnrLLrli~D~nladYitsKnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDLliLG~~ra~e~ag~ 1074 (2346)
|||||+||||||||||+||||||||||||||+|+||||+|||+|||||||||||||+||||||+|||+||++||+|+|||
T Consensus 979 ~ekiD~tLLnrLlrLv~D~niAdYitakNNvvi~yKDM~htN~yG~IrGLqfsSFi~qfYglvlDLlvLG~~ra~e~agp 1058 (2321)
T KOG1795|consen 979 FEKIDLTLLNRLLRLVLDPNIADYITAKNNVVINYKDMSHTNSYGLIRGLQFASFIVQFYGLVLDLLVLGLTRASEIAGP 1058 (2321)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHhhccceEEEeeccccccchhheehhhHHHHHHHHHHHHHHHHHhcchhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeccccccccCcceEEEeecceEEEEEecChHHHHHHHHHhhhcCCCCCCCcccccCCcccCcchhhhhccc
Q 042625 1075 PHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMK 1154 (2346)
Q Consensus 1075 ~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~~~E~~~Li~~yL~e~pdpnnen~vgYnn~~cwprd~rmrl~~ 1154 (2346)
|++||+||+|+|+.+|++||||+||||||+|||+|||+++|+++|+||||+|||||||||++||||++|||||||||||+
T Consensus 1059 ~~~pn~f~~f~d~~~e~~hpIrlY~RyiD~iyi~Frf~~~E~~dLiq~yl~E~pdpn~en~v~ynnkkcWprdarmrl~k 1138 (2321)
T KOG1795|consen 1059 PQMPNEFLTFQDVATETAHPIRLYCRYIDRIYIMFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMK 1138 (2321)
T ss_pred CCCcchhhhhhhhhhhccCceeeeeeecceEEEEEEechhhHHHHHHHHhhcCCCcchhhhccccccCCCcchhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhccCCccceeeeecCceEEEEeccCCceeEeecceeEEeeccccchhhcccccCcceeecccccccc
Q 042625 1155 HDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKE 1234 (2346)
Q Consensus 1155 ~dvnlgravfwei~~rlP~Sl~~i~w~~sf~svyskdNpnllFsm~GFevrilpk~r~~~~~~~~~~e~~W~L~n~~tke 1234 (2346)
|||||||||||||++|+|+|+++++|+++|+|||||||||+||||||||||||||||+..|.++ +||||+|+|+.|||
T Consensus 1139 ~dvNlGRavfwei~~R~p~s~tt~~we~sf~svysk~nPnllFsM~GfevrIlpk~r~~~e~s~--~dgvW~L~ne~tk~ 1216 (2321)
T KOG1795|consen 1139 HDVNLGRAVFWEIKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMIEEESS--KDGVWNLQNERTKE 1216 (2321)
T ss_pred ccccchhHHHHHHHhhccchhhhhhhccceeeEEecCCCceeeeecceEEEEcchhhhhhhhhc--ccceeecccccccc
Confidence 9999999999999999999999999999999999999999999999999999999998877775 89999999999999
Q ss_pred ccceeeeecCHHHHHHHHHHHHHHhHhcCcchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhhhcc
Q 042625 1235 RTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGL 1314 (2346)
Q Consensus 1235 ~ta~a~l~Vs~e~i~~F~nrirqIlmssgStTFtKIa~KWNt~li~l~tYfREA~~~T~~lld~Lvk~E~KIq~RIK~GL 1314 (2346)
|||+|||+||||+|++|+||||||||||||||||||||||||+|||+|||||||+++|++|||+|||||+|||||||+||
T Consensus 1217 rta~a~l~V~ee~i~~F~nrir~IlmsSGStTFtKia~kWNTali~l~TYfREaiv~T~~LldlLvk~E~kIq~rvKigl 1296 (2321)
T KOG1795|consen 1217 RTAQAFLRVDEEGIKMFENRIRQILMSSGSTTFTKIANKWNTALIGLMTYFREAIVNTQELLDLLVKCENKIQTRVKIGL 1296 (2321)
T ss_pred hhhheeeEecHHHHHHHHHHHHHHhhccCchhHHHHHHHHhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccCCccccccccccccccccccCcccccccccccceeeccCCCccccccccccccccccchhhhhhHH
Q 042625 1315 NSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQ 1394 (2346)
Q Consensus 1315 NSKMPsRFPpvvFYtPKElGGLGMLS~ghilIp~SDL~~skqtd~githfr~gmsh~~d~lIP~i~rYI~~We~Ef~dSq 1394 (2346)
||||||||||||||||||+|||||||||||+||||||+||+|||+||||||+||||+||+||||+||||||||+||+|||
T Consensus 1297 NSKMPsRFPPvvFYtPKElGGLGMlS~ghilip~sDl~wskqtd~githfrsgm~h~~~~lIP~l~rYiq~We~EF~dSq 1376 (2321)
T KOG1795|consen 1297 NSKMPSRFPPVVFYTPKELGGLGMLSMGHILIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQ 1376 (2321)
T ss_pred ccCCCCCCCCeeeeChhhcCccceeecCcEeechhhcccccccCccceeecccCCcchhhhhhHHHHhcchhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccccccchhhhcccCCCcccccccccCc
Q 042625 1395 RVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGK 1474 (2346)
Q Consensus 1395 rVW~Ey~~kr~Ea~~qnrrlt~edle~swdrGIPRI~TLfqkdR~tLaYDkGwRvR~~fk~y~~~k~npFwWT~~~HDGK 1474 (2346)
|||+|||.|||||.+||||||+||||||||||||||||||||||||||||||||||++|||||++|+|||||||||||||
T Consensus 1377 RVWaEYa~krqea~~qnrrltledle~swDrGIPRinTLfQkdRhtLaYDkG~RvrteFkqYq~~k~npFWwT~qrHDGK 1456 (2321)
T KOG1795|consen 1377 RVWAEYALKRQEAPAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKQYQVLKQNPFWWTHQRHDGK 1456 (2321)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhccccccCCchhhHHHhhcchhheecccchHHHHHHHHhccCCCCceecccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHhcCccccccccccccccCCCccccccccccccccccchhhhhHHHhhcCCCCCCcceeeecccccc
Q 042625 1475 LWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTIN 1554 (2346)
Q Consensus 1475 LWnLn~YrtDvIqaLGGvE~ILEHTLFkgT~F~sWeglFWEkasgfE~s~k~kkLTnAQRsGLsQIPNRRFtLWWSPTIN 1554 (2346)
|||||+||+||||||||||||||||||+||||++|||||||||||||++|||||||||||+|||||||||||||||||||
T Consensus 1457 LWnln~yrtD~iqALGGVegilehtlf~~t~f~s~e~Lfwekasgfees~k~KkltnaQr~gL~QipNrrftlwwspTin 1536 (2321)
T KOG1795|consen 1457 LWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPSWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTIN 1536 (2321)
T ss_pred cccccchhHHHHHHhcCcchhhhcccccccCcHHHHHHHHHhhcCchhhhHHHHHHHHHHhcccCCCccceEEeecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeeeecceeeeeccccCcchhhHHHHHHHhhhhHhhHHHHHHHHHHHHHHhhhhcccchhhhccCCCcccccc
Q 042625 1555 RANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMN 1634 (2346)
Q Consensus 1555 RanVYVGfqvQlDlTGIfMhGKipTLKISlIqIFRaHLWqkIHeSiV~dlcqvld~e~~~L~I~~Vqke~iHPRKSYkmn 1634 (2346)
|||||||||||||||||||||||||||||||||||||||||||||+|+|+|||||+|||+|+||+|||||||||||||||
T Consensus 1537 rAnvyvgfQvQldLTgi~mhgkIptlkIsLiqifRaHlwQKihesvv~~lc~v~D~ELDal~iEtV~ketih~rKsykm~ 1616 (2321)
T KOG1795|consen 1537 RANVYVGFQVQLDLTGIYMHGKIPTLKISLIQIFRAHLWQKIHESVVNDLCQVFDQELDALSIETVQKETIHPRKSYKMN 1616 (2321)
T ss_pred hhhheeeeEEeeccceeEEeccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhcCcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccccccCcCccccccccccccccccceEEEEEeeccCCCCchhhHHHHhhcccccCCCcccccCCCceEE
Q 042625 1635 SSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMI 1714 (2346)
Q Consensus 1635 SScADI~L~~~~~W~vskPsll~d~~d~~~~~~t~k~WiDvQLRWGDyDSHDIerY~RakfldYttd~~s~YPSptG~iI 1714 (2346)
||||||++++.++|.|++||++.+++|.++...++++|+|||||||||||||++||+||||||||+|++|+||||||+||
T Consensus 1617 SScAdIll~~~~~~~vs~ps~i~~skd~~~~~~~~klw~dvqLr~gdyds~dv~rytrAkfLd~Ttd~~s~ypsptGv~i 1696 (2321)
T KOG1795|consen 1617 SSCADILLGAGVKWGVSNPSLIPESKDLWDPFFTAKLWIDVQLRWGDYDSHDVERYTRAKFLDYTTDNASQYPSPTGVLI 1696 (2321)
T ss_pred chhHHHhhhcceeecCCCccccccchhhccccchhhhhhhhhhhccchhhhhHHHHHHhhhhhhhccccccCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccccCCCCcHHHHHHHHHHHHhhCchhHHHHHHHHhhcccccCCCCCcccCCCChhhhccCceEEEEecc
Q 042625 1715 GLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDT 1794 (2346)
Q Consensus 1715 ~iDLaYN~~sayG~w~~glk~li~~am~~imk~NpaL~vLRERIRKgLQLYsSe~~e~~l~s~Ny~eLF~n~~~wfVDDt 1794 (2346)
|||||||+||||||||||+|||||+||++|||+|||||||||||||||||||||||||||+||||||||+||++||||||
T Consensus 1697 ~iDL~YN~~sayGNw~~g~Kpli~qsM~kImkanpalyvLRERiRKgLQlYsSe~~e~~l~ssNygeLFsnqi~lfVDdt 1776 (2321)
T KOG1795|consen 1697 GIDLAYNLHSAYGNWFPGLKPLIQQSMNKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSSNYGELFSNQIILFVDDT 1776 (2321)
T ss_pred EeeehhhhhhhhcccccccHHHHHHHHHHHHhhCcHHHHHHHHHHHhhhhhccCCCCceeccccHHHhhhcceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhhhhHHHHHHHhhcCCcccCCceEEE
Q 042625 1795 NVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIV 1874 (2346)
Q Consensus 1795 nvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~QlakwktAeEvaalirSLP~eEqPkqiIV 1874 (2346)
||||||||||||||+||||||||||||||+||||||||||||||||||||+||||||||||||||+||||+|||||||||
T Consensus 1777 nvyRvtihktfegnlttk~ingaiFi~nPrtG~LflKiihtsvwaGqkrl~qlaKwktAeeVaaLirslp~EEqpkqiIV 1856 (2321)
T KOG1795|consen 1777 NVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIV 1856 (2321)
T ss_pred ceEEEEeeeccccccccccccceEEEecCCCCceEEEEeecccccchhHHHHHHhHhhHHHHHHHHhcCChhhcCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeeehhhHhhccChhhHHHHHHHHHHhh
Q 042625 1875 TRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRAL 1954 (2346)
Q Consensus 1875 trk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNlYDdWL~siSsyTaFsRliLiLR~l 1954 (2346)
|||||||||||||||||||+||||||++||||||||+||+|+||+|||||||+||||||||++||||||||||+||||||
T Consensus 1857 trk~MlDplEvhllDfPnI~ik~sel~lPFqa~m~i~k~~dlilkatEpqmvlfNlYddWl~tissyTaFsRliLilral 1936 (2321)
T KOG1795|consen 1857 TRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACMKIEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 1936 (2321)
T ss_pred echhccChHHHhhccCCceeeecccccccHHHHhhHHHHhhHHhhccCceEEEEehhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcCCccchhhhhhceeccccCCCchhH
Q 042625 1955 HVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQR 2034 (2346)
Q Consensus 1955 ~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~dy~kk~nV~~~sLtqsEirDIILG~ei~~pS~~r 2034 (2346)
|||+|+||+||+||+++++++||+||+|||+|||+||+|||||||+|||||||||+++|||||||||||||+|++||.||
T Consensus 1937 ~vn~e~~k~il~~d~t~i~~~~hiWP~~tD~qWikvE~qlkDLIl~dY~kk~nvn~s~LtqsEirDIilG~~isaps~qr 2016 (2321)
T KOG1795|consen 1937 HVNEERAKMILKPDKTTITEPHHIWPSLTDEQWIKVEVQLKDLILADYGKKNNVNVSSLTQSEIRDIILGMEISAPSQQR 2016 (2321)
T ss_pred cCCHHHHhhhcCCCcceeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHhhhheeeeecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcceEEEEEeeecccCceEEEEecCcccccccccchhhhHhHhhhccccccccceeeccccccccccE
Q 042625 2035 QQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYT 2114 (2346)
Q Consensus 2035 q~~~eie~~~~~~~~~t~~~t~t~n~~G~~i~~~t~s~yE~~~f~skt~WR~Rai~~~~L~lr~~~i~v~~~d~~e~~~t 2114 (2346)
||+||||||.++++|+||++|+|+|+|||||+++|+++||+++|+|+++||+|||++++|+||++||||+++|+.+.++|
T Consensus 2017 qqiaeiekq~~e~~q~ta~~t~t~n~~gde~i~~~ts~ye~~~f~sk~eWr~~ais~t~l~Lr~~~iyvnsddi~e~~~t 2096 (2321)
T KOG1795|consen 2017 QQIAEIEKQTKEQSQLTAVTTRTTNVHGDEIIVTTTSNYETQTFSSKTEWRVRAISATNLPLRTNHIYVNSDDIKETGYT 2096 (2321)
T ss_pred HHHHHHHHhhhhhhhheeeceeeecccCceEEEEecccchhhhccchHHHHHHHHhccCcceecceeeecchhhhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhHHHHHHHhccccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccccCCCcceEEeeCCC
Q 042625 2115 YIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPN 2194 (2346)
Q Consensus 2115 yVLPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~LeDLE~LGWIHTQp~ 2194 (2346)
|+||+|||||||+|||+|||||||+||+||+||||||||+|||||||+|++++|++|..+|.|+.++|||+|||||||++
T Consensus 2097 yilPkNllkkFi~isD~r~qiag~~yG~s~~d~pqvkeIr~ivmvPQ~gs~~~v~lp~~lP~~~~l~d~e~Lgw~hTq~~ 2176 (2321)
T KOG1795|consen 2097 YILPKNLLKKFITISDLRTQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGSHQGVHLPSFLPIHGVLEDLEPLGWIHTQPN 2176 (2321)
T ss_pred eeccHHHHhhheeecchhhhhheeeeccCCCCCCccceEEEEEeccccccccccccCccCCcchhccCCcccchhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecCcchhcccccccCCCCCCCCCCCCcceEeeEEe
Q 042625 2195 ELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLL 2274 (2346)
Q Consensus 2195 El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT~eG~eWG~~Nk~~~~~~~g~~~~~~~~~q~ll 2274 (2346)
|+++|||+||+||++++++|+ +++|+|||+||||||||+||+||++|||||+.|+|.+.+|.||.|+|++||||||
T Consensus 2177 el~~lsp~dV~th~ki~~~~k----~k~i~~t~~~tpgs~sl~ay~lt~~G~eWg~~n~d~g~~~~gy~pt~~e~~q~ll 2252 (2321)
T KOG1795|consen 2177 ELPQLSPQDVTTHAKILVDNK----EKCIIITCSFTPGSCSLTAYKLTPSGYEWGEVNKDKGNNPKGYLPTHYEKVQMLL 2252 (2321)
T ss_pred ccccCCHHHhhhhhhhhhcCc----cceEEEEeeccCCcceeeeeccCccccccchhcccccCCccccCccHHHHHHHhh
Confidence 999999999999999999985 5899999999999999999999999999999999998889999999999999999
Q ss_pred ecccceEEEeeCCCCccccccccccCCCceEEEEECCcccCccccCCcccccccccccccccccCCcCcCC
Q 042625 2275 SDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTF 2345 (2346)
Q Consensus 2275 sd~~~g~flvP~~~~WNy~f~~~~~~~~~~y~~~~~~P~~fy~~~hr~~hf~~f~~~~~~~~~~~~~~d~~ 2345 (2346)
||||+||||||++++|||+|||++|+++|+|++|+|+|++|||+.|||+||++|++++++ .|+|+||+|
T Consensus 2253 sdr~lG~f~VP~~~~WNYnF~g~~~~~~m~y~~klg~P~~fy~~~hRp~Hf~~f~~~~~~--~e~d~eD~f 2321 (2321)
T KOG1795|consen 2253 SDRFLGFFMVPENGVWNYNFMGVRHDPRMKYSLKLGNPKEFYHEFHRPTHFLRFSELEEG--GEEDREDVF 2321 (2321)
T ss_pred hhcceeEEEccCCCccceeccccccCCcceEEEEecCchHhhhccccchHhhhhhhhccC--ccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999987 467999987
No 2
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=100.00 E-value=0 Score=7980.21 Aligned_cols=2328 Identities=62% Similarity=1.025 Sum_probs=2272.6
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCccccccCC-CchhH---HHHHHHHHHHHHHhhh-cccccccccccccccccCCCh
Q 042625 9 GGPPLAPPGTSGAVP-IPPPPSQPSYTVLTTTP-SPQEA---EARLEEKARKWMQLNS-KRYGDKRKFGFVEAQKEDMPP 82 (2346)
Q Consensus 9 ~~~~~~pp~~~~~~p-~~~~p~~~s~~~~s~~~-~~~~~---~~~l~~~~~~w~~~~~-~~~~~~~~~~~~~~~k~~mpp 82 (2346)
|-||||||||+-.|| .|||||||++.|-.-.. .+... +-.+.+.+..|+..++ +++|+|+|.+.|.+.|.+|||
T Consensus 7 g~ppppppppg~epps~pppPppPg~~~~~r~~k~~~~~g~~~~~~g~~~~~~r~S~k~~k~g~kak~~~v~t~ka~~Pp 86 (2365)
T COG5178 7 GNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQLSIVGDILGHSGNPIYSLRVSDKPVKLGNKAKTLHVLTLKAPIPP 86 (2365)
T ss_pred CCCcccccCCCCCCCCCCCCccCCCcchhhhccccHHHhhhhhhhcCCcceeeecccchhHhhhhhhheeeeccCCCCCH
Confidence 335454444443344 56777777886322111 11111 1223345667876666 588999999999999999999
Q ss_pred HHHHhhhcccCCCCccccccccccccccccccHHHHHHHhhcCCCCccccceeeEEEeeeceEEeeccccccchhHHHHH
Q 042625 83 EHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQ 162 (2346)
Q Consensus 83 ehlrkii~~~~dms~~~~~~dkr~~lgaLky~PhAi~klLenmPmPWE~vr~V~VLYHitGAITFVnEiPrViEpvy~AQ 162 (2346)
||||||+++||||+|++++.|||+|||||||+||||+|||||||||||++++|+||||.+||||||||+|+||||+|.||
T Consensus 87 eHLrki~~~~sdm~s~~~~~Dkrs~lgalkylPhavlkLLeNmP~pWe~~~evkvlyh~~Gaitfvne~prviep~~~aq 166 (2365)
T COG5178 87 EHLRKIQSPCSDMPSVLTKVDKRSYLGALKYLPHAVLKLLENMPSPWEDVSEVKVLYHCHGAITFVNEVPRVIEPQLFAQ 166 (2365)
T ss_pred HHHHhhhCccccchhhhhhhhhHhhhhhhhhchHHHHHHHhcCCChHhhhheeeEEeeccceEEEeecCccccCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhhhccccccccccCCCCCCCCCCCccccCCCCCCCccccccCCccccccccccccCCCCCccccccCCCc
Q 042625 163 WGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPS 242 (2346)
Q Consensus 163 W~tmWi~MRrEKrdRrhFKRmrfPpFDDeEPpldy~dnI~dvepleaIq~~Ld~~~d~~v~dWfYd~kpL~~~~~vng~s 242 (2346)
||+||++||||||||.||||||||||||+||||++...++++||++||.+.||+++|+.|.||+|++|+|.|++.|||++
T Consensus 167 wg~~w~~mrrekRdR~~Fkr~rfppfdd~Eppls~~q~v~~vePl~pin~~ld~~dde~v~dw~y~sr~led~p~vnG~~ 246 (2365)
T COG5178 167 WGLCWSPMRREKRDRYSFKRKRFPPFDDLEPPLSKSQWVLGVEPLMPINIRLDRMDDEHVRDWVYTSRDLEDHPSVNGAM 246 (2365)
T ss_pred hhhhhhHHHHHhhhhhcchhccCCCCcccCCcccHHHHHhccCCCCCCCCCcccCCcHHHHHHHhhccccccCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecChHHHHHHHHHhhhhccccccCCccccccccccccccccccccCCCCccccccccccCCcCCccccccccceee
Q 042625 243 YRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLII 322 (2346)
Q Consensus 243 yk~w~l~l~~m~~Lyrl~~~Llsd~~d~ny~yLFd~ksFfTaKalN~aIPgGPKFEpL~~~~~~~d~d~~efn~i~~ii~ 322 (2346)
||+|.+++|+|++||||+-+|.++++|.||+|||+.+|||+|||||+||||||||||||+++..+.|||||||+|.|||+
T Consensus 247 yrrw~~~lp~m~NL~Rl~~~l~~~ird~ny~Ylf~~~sfF~akaln~aipggpkfeply~res~e~ed~nefn~i~rii~ 326 (2365)
T COG5178 247 YRRWKYMLPAMHNLLRLMPMLWESIRDVNYVYLFSGLSFFVAKALNVAIPGGPKFEPLYSRESAEFEDENEFNGIVRIIR 326 (2365)
T ss_pred hhhcccCcHHHHHHHhcccccHHHhccccEEEEecCceeeehhhhcccCCCCcccccccccccccccchhhhcceeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccceeecCCccccCCCcceeeecccccceeeecc-CCCCCCccccCCcCCCCCCCCCC----------------CC
Q 042625 323 RSPLRTEYRIAFPHLYNNRPRKVRLGIYHTPMVMYIKT-EDPDLPAFYYDPLIHPIPSTNKE----------------RH 385 (2346)
Q Consensus 323 r~~irteykiafP~lYns~~r~v~~~~yh~p~~~~~~~-~d~~~p~f~~~~~~npi~~~~~~----------------~~ 385 (2346)
|.||++||+|||||||||+||+|.+++||.|.+|+|-. ||+|+|++.+||+||||.+...+ +.
T Consensus 327 r~pi~~ey~vafp~lynsrprsvav~~y~~p~~~~v~~dEd~d~pa~f~dp~inpi~~~ql~~h~~d~~~s~e~s~v~E~ 406 (2365)
T COG5178 327 RPPIDDEYPVAFPGLYNSRPRSVAVECYGSPECRDVFLDEDEDYPANFKDPLINPILGVQLDNHPYDGKGSNEESCVMER 406 (2365)
T ss_pred eCCcCCccccccchhhcCcccceeeeccCCccceeccCCcCccchhhhcCcccccccccccccccccCCCCcchhhhhhc
Confidence 99999999999999999999999999999999999984 99999999999999999754331 23
Q ss_pred CcccCCcccccCcCCCCCCCccccchhhcccCCCcccccCCCccccccccchhhhhhhcCCCCCCceehhhHhhhhhHHH
Q 042625 386 DDFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSDWYKEHCPPSYPVKVRVSYQKLLKCFV 465 (2346)
Q Consensus 386 ~~~~lp~~~~pfl~~~~l~~~~t~~~~~l~~ap~pfn~r~g~~~ra~dvpl~k~w~~~~~~~~~p~kvrvSyqkLLK~yv 465 (2346)
.+|.+| .|.|||..+.++-++|++|..|+|+|.|||+++|++.||+||||.+.||++||+.++||||+|||||||||||
T Consensus 407 ~~f~~p-~f~P~l~~e~~e~~~t~~A~~ll~~pfpfnk~kG~~~raqdvpl~k~w~l~hc~~e~pvkv~vsyqkLLknyv 485 (2365)
T COG5178 407 KLFSEP-IFYPYLYNESTEVRTTERAHLLLKNPFPFNKGKGRAERAQDVPLDKPWLLGHCLQERPVKVPVSYQKLLKNYV 485 (2365)
T ss_pred CCCCcc-ccchhhccccccccchHHHHHHhcCCCCcccCcchhhhhhcCcccchHHhcCCchhcCCccchhHHHHHHHHH
Confidence 448899 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCcchhHHHHHHhccCcceEEechhHHHHHHHHHHhhhhHhHHhhhccCCceeeeccccCCccccccchhhh
Q 042625 466 LNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKER 545 (2346)
Q Consensus 466 ~n~l~~~~~~~~~k~~llk~lk~tkfFq~t~iDWvEaglqvcrQG~nMLnlLIhRK~L~yLhLDyNFNLKp~KtLTTKER 545 (2346)
+|.+|+++|++..+++|||+||||||||+|+|||||||||+||||||||++|||||||+|||||||||||||||||||||
T Consensus 486 ~N~lh~t~p~~h~~t~lLk~LKNTkyFQ~T~IDWVEAGLQlcrQGhnML~llihRKgLtYLhLDyNfNLKPtktLTTKER 565 (2365)
T COG5178 486 RNMLHKTRPRPHTNTHLLKELKNTKYFQRTEIDWVEAGLQLCRQGHNMLSLLIHRKGLTYLHLDYNFNLKPTKTLTTKER 565 (2365)
T ss_pred HhhhcccCCCCCcchHHHHHhhcccchhhcccHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeecccCcccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhhhhhhccCCCchHHHhhhhhHHhhccccceeeeehhhHHHHHHHhhhccchhhhcc
Q 042625 546 KKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYR 625 (2346)
Q Consensus 546 KKSRfGnaFHL~REilr~~KliVD~Hvq~RlGniDa~qLadgl~yiF~hvG~LTGiYRYKYk~m~QIr~cKdlKhliyyr 625 (2346)
||||||||||||||||||+|+|||+|||||+|||||||||||++||||||||||||||||||+|||||+|||+|||+||+
T Consensus 566 KKSR~GnsfHLmRE~Lk~~KliVD~HVqfRlGniDayqLadgvhyilNhvGqLTGiYRYKYklM~QIraCKd~KhliyY~ 645 (2365)
T COG5178 566 KKSRVGNSFHLMREMLKFIKLIVDIHVQFRLGNIDAYQLADGVHYILNHVGQLTGIYRYKYKLMKQIRACKDWKHLIYYA 645 (2365)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhhhhhhccCchHHHHhcchhHHhhcchhheehhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccchhHHHHHHHhchhHHHHHHHhhhhHHhhhccccCCCcccccccccccchhHHHHHHHHHHHHH
Q 042625 626 FNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLD 705 (2346)
Q Consensus 626 fn~g~vgKgpG~gfW~P~WRVW~FFlRGiiPLLeRwL~nLlaRqfeGR~s~~~~K~vTKQRveS~~Dlelra~vm~dIld 705 (2346)
||+| ||||||||||+|+||||||||||+|||||||||||++|||||| |.+++|++||||+||+||+|||++||.||++
T Consensus 646 fn~g-~gkgpgcgfW~p~WRvWlfflRG~iPLLeRyignLvtRqfEGR-s~~~~K~~tKQR~ds~yDleLr~~vM~dil~ 723 (2365)
T COG5178 646 FNEG-VGKGPGCGFWGPQWRVWLFFLRGHIPLLERYIGNLVTRQFEGR-SDYNPKPLTKQRSDSGYDLELRRQVMADILS 723 (2365)
T ss_pred hhcC-CCCCCCCCcccHHHHHHHHHHhcccHHHHHHHhHHHHHHhccc-cCCCccchhhhhccccccHHHHHHHHHHHHH
Confidence 9997 9999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred hcccccchhhHHHHHHHhHHHHhhhhcCCCccCCCCChhHHHHHHHHHHhccceehhhhhhhHhhhccCCeechhhhhhc
Q 042625 706 AMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKN 785 (2346)
Q Consensus 706 m~pe~i~~~k~r~iLqHlsEAWRCWKAnipwkvpgmp~pi~~iI~rYVK~KAdww~~~a~ynReRI~rg~tVdKtv~kKN 785 (2346)
||||||||.|+||||||||||||||||||||+|||||+||+++|+||||+||||||++||||||||+|||+|+||+.|||
T Consensus 724 mlpe~irq~k~rtiLQHlsEAWRCWKANiPw~vpg~papi~~vi~ryikSkad~wts~ahfnrEri~RgA~V~kt~~kkn 803 (2365)
T COG5178 724 MLPEGIRQTKVRTILQHLSEAWRCWKANIPWHVPGEPAPILEVIRRYIKSKADLWTSSAHFNRERISRGAGVGKTKEKKN 803 (2365)
T ss_pred hcCchhhhhHHHHHHHHHHHHHHHhhcCCCccCCCCcccHHHHHHHHHhchhhheehhchhhHHHHhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHhhhcCCCCcChhhHHHHHHHHHHHHhcCCCccCCCCCCCccccchhHHHHHHHHHhhhhhhhc
Q 042625 786 LGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFAPIPFPPLSYKHDTKLLILALERLKESYSVAVR 865 (2346)
Q Consensus 786 lGRlTRL~lK~EqeRQ~~ylk~gpyls~eeavaIy~~~v~WLesr~f~~IpFP~~~yK~DtKlL~LALe~Lke~y~~~~r 865 (2346)
||||||||+|+|||||++|+|+||++++|||++||++||+|||||.|+||||||++||||||||+||||+||+.|++|.|
T Consensus 804 LgRltrlwvk~eqErq~~~~k~Gp~~t~eEa~~i~~i~v~wlesR~f~pipfPpL~yk~dtkilvLalE~lk~~yt~kir 883 (2365)
T COG5178 804 LGRLTRLWVKLEQERQVDSAKVGPKSTKEEAKRIGKITVLWLESRMFEPIPFPPLRYKEDTKILVLALEYLKSKYTGKIR 883 (2365)
T ss_pred HHHHHHHHHHhhHHHHHhHHhhCCcCCHHHHHHHHHHHHHHHHhcccCCCCCCCcCCcccchhhhhhHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhcChHHHHHHHHHHHhhccccccceeeeeccccceeeeeecccchhhHHHHHHHHhhhhcccCCC
Q 042625 866 LNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL 945 (2346)
Q Consensus 866 Ln~~qrEEl~lIE~AydnphetL~rIK~~LLtqR~FKeV~ie~~d~ys~l~PvY~v~plEKitDayLdqYLwYEadkr~L 945 (2346)
||+|||||+||||+|||||||||+||||.|||||+||||||+||++|++++|||+|||+|||+|||||||||||||+|+|
T Consensus 884 ln~s~rEElal~e~Aydnphdtl~rIKk~LLTqR~FKeVgit~m~~y~~~ipvYsVdp~Eki~DAyLdqYLwyEaDrr~l 963 (2365)
T COG5178 884 LNESTREELALLEKAYDNPHDTLFRIKKSLLTQRSFKEVGITLMRHYDGAIPVYSVDPVEKIVDAYLDQYLWYEADRRNL 963 (2365)
T ss_pred CChhhHHHHHHHHHHhcChHHHHHHHHHHHHhhhhhhhcceeHhhhcCCccceeecChHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChhHHHhhhcccccccCcccCCCCeeEEEEeehhHHHHHhhcHHHHHHHHHHHhcchhhhhhhhcCce
Q 042625 946 FPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNV 1025 (2346)
Q Consensus 946 FP~wiKPsD~E~pPllvyKwcqgInnl~~~w~~s~ge~~vl~et~l~~~~ekiD~tlLnrLLrli~D~nladYitsKnNv 1025 (2346)
||+||||||+|+||+|||||||||||++++||+|+|||.|||||+|++++||||+|||||||+|||||||||||+|||||
T Consensus 964 FP~wiKPsDsE~ppllvykwcqgInnl~~~wd~s~ge~~VL~Et~l~~i~ekvD~tLLnrLl~Lv~DpnlAdYi~akNNv 1043 (2365)
T COG5178 964 FPEWIKPSDSEMPPLLVYKWCQGINNLKAAWDTSNGERLVLYETKLEGIMEKVDNTLLNRLLKLVLDPNLADYIIAKNNV 1043 (2365)
T ss_pred ChhccCCccCCCCcchHHHHHhhhccHHHHHhccCcceeEeehhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccccccccccccchhHHHHHHHHHHHHHHHhcccccccccCCCCCCccceeeccccccccCcceEEEeecceE
Q 042625 1026 VLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKV 1105 (2346)
Q Consensus 1026 ~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDLliLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki 1105 (2346)
+++||||+|||+||||||||||||||||||||+||||||++||+|+|||+..||+||+|++.++|+.||||+|+||||+|
T Consensus 1044 vv~yKDMshtN~yGlirGLqfsSFi~qfYglvvDLlvLG~~rat~iagpa~~pn~Fm~fKs~~~e~shpIrlYtRy~D~i 1123 (2365)
T COG5178 1044 VVVYKDMSHTNHYGLIRGLQFSSFIYQFYGLVVDLLVLGLQRATEIAGPADAPNVFMDFKSRATETSHPIRLYTRYMDDI 1123 (2365)
T ss_pred EEEeeccccccchhhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhccCCCCCchhhhhhhhhcccccCceeeeehhcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecChHHHHHHHHHhhhcCCCCCCCcccccCC-c-ccCcchhhhhcccccccccchhhhhhhccCCccceeeeecCc
Q 042625 1106 HILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNN-K-KCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS 1183 (2346)
Q Consensus 1106 ~ilfrf~~~E~~~Li~~yL~e~pdpnnen~vgYnn-~-~cwprd~rmrl~~~dvnlgravfwei~~rlP~Sl~~i~w~~s 1183 (2346)
||+|||+.+|+++|+++||.|||||+++|.+||+| + .|||+|||||||+|||||||||||||.+|+|.|+++++|+++
T Consensus 1124 Yi~Frf~~~E~~~L~~~yl~Enpdp~~~n~~~y~n~~k~cWp~d~rmrl~~~dvNlGRavfwEI~~R~p~slt~~~we~s 1203 (2365)
T COG5178 1124 YIVFRFQRKEEDSLLEDYLRENPDPEEANNERYRNYFKGCWPDDCRMRLGPLDVNLGRAVFWEILRRCPHSLTATRWEPS 1203 (2365)
T ss_pred EEEEEeccchhHHHHHHHHhcCCCchhhhhhhhhccccccCcchhHhhhccchhchhHHHHHHHHHhccchhhhhhhhcc
Confidence 99999999999999999999999999999999999 4 499999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCceeEeecceeEEeeccccchhhcccccCcceeeccccccccccceeeeecCHHHHHHHHHHHHHHhHhcC
Q 042625 1184 FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSG 1263 (2346)
Q Consensus 1184 f~svyskdNpnllFsm~GFevrilpk~r~~~~~~~~~~e~~W~L~n~~tke~ta~a~l~Vs~e~i~~F~nrirqIlmssg 1263 (2346)
|.|||||+|||+||||||||||||||+|.. ++.|. ++|||+|.|+.||+|||+|||+||+++|++|++||||||||||
T Consensus 1204 f~svysk~nPnllFSM~GfeVrIlpk~r~~-ee~s~-~~gvW~L~d~rtkqrta~A~l~VsE~gI~~F~srIr~IlmtSG 1281 (2365)
T COG5178 1204 FGSVYSKINPNLLFSMVGFEVRILPKIRKI-EERSL-SSGVWRLGDGRTKQRTAHANLAVSEGGIEMFESRIRHILMTSG 1281 (2365)
T ss_pred cceeeeccCCceeEEeeceEEEeccchhhh-heecc-cccceeccCCchhhhhhhhheeechhhHHHHHhhhhHhhhccC
Confidence 999999999999999999999999999954 44555 8999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCccccCCccccccccccccc
Q 042625 1264 STTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGH 1343 (2346)
Q Consensus 1264 StTFtKIa~KWNt~li~l~tYfREA~~~T~~lld~Lvk~E~KIq~RIK~GLNSKMPsRFPpvvFYtPKElGGLGMLS~gh 1343 (2346)
||||||||+||||+||++|||||||+++|++|||+|||||.+||||||+|||||||+||||||||+||||||||||||||
T Consensus 1282 StTFtKvA~kWNT~lial~TYyREai~~T~~Lld~Lvk~E~~IqnrVK~glNSKMP~RFPPavFY~PKElGGLGMlS~gh 1361 (2365)
T COG5178 1282 STTFTKVATKWNTQLIALVTYYREAICDTKGLLDKLVKAERLIQNRVKKGLNSKMPVRFPPAVFYAPKELGGLGMLSVGH 1361 (2365)
T ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcceeeChhhcCCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccccceeeccCCCccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHhccccccccccccc
Q 042625 1344 ILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSW 1423 (2346)
Q Consensus 1344 ilIp~SDL~~skqtd~githfr~gmsh~~d~lIP~i~rYI~~We~Ef~dSqrVW~Ey~~kr~Ea~~qnrrlt~edle~sw 1423 (2346)
|+||+|||+|||||||||||||+||+|++|++||++||||++||+||+||||||+|||.|||||.|||||||+||||+||
T Consensus 1362 ilip~sDl~wSkqtdtgithfrsgmt~~~e~lIP~~~rYis~We~EF~dSqRVWaEYa~krqea~qqnrrl~~e~le~sw 1441 (2365)
T COG5178 1362 ILIPHSDLEWSKQTDTGITHFRSGMTTNGERLIPAAMRYISRWEYEFEDSQRVWAEYARKRQEAGQQNRRLTLEDLEMSW 1441 (2365)
T ss_pred EeeehhhcccccccCccceeeccccccCccccchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcchhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccccccccccccccccccchhhhcccCCCcccccccccCcccccCCchhHHHHHhcCcccccccccccc
Q 042625 1424 DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKG 1503 (2346)
Q Consensus 1424 drGIPRI~TLfqkdR~tLaYDkGwRvR~~fk~y~~~k~npFwWT~~~HDGKLWnLn~YrtDvIqaLGGvE~ILEHTLFkg 1503 (2346)
|||||||||||||||||||||||||||++||||++.++||||||++|||||||+||+||+|+||||||||||||||||||
T Consensus 1442 DrGIPRisTLfQrdRhtLaYDrG~R~r~eFkqYsl~~n~pFWwT~~~HDGKLW~ln~yr~DviqALGGvegIleHTlFka 1521 (2365)
T COG5178 1442 DRGIPRISTLFQRDRHTLAYDRGFRMRSEFKQYSLKPNNPFWWTDAKHDGKLWSLNRYRLDVIQALGGVEGILEHTLFKA 1521 (2365)
T ss_pred ccCChhHHHHHhhcchhhhhccchHHHHHHHHhccCCCCCceecccccCccccchhhhhHHHHHHhcchhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccccccccccccchhhhhHHHhhcCCCCCCcceeeeccccccccceeeeeeeeecceeeeeccccCcchhh
Q 042625 1504 TYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKIS 1583 (2346)
Q Consensus 1504 T~F~sWeglFWEkasgfE~s~k~kkLTnAQRsGLsQIPNRRFtLWWSPTINRanVYVGfqvQlDlTGIfMhGKipTLKIS 1583 (2346)
|||+|||||||||||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||||
T Consensus 1522 TgF~SweglFWEkasgfe~smkfkKLTnAQr~GLsQIPNRRFtLWWSPTINRaNVYVGfqVQLDlTGI~mHGKiPTLKIS 1601 (2365)
T COG5178 1522 TGFRSWEGLFWEKASGFEESMKFKKLTNAQRMGLSQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGILMHGKIPTLKIS 1601 (2365)
T ss_pred cCcchhhhhhHhhhcchHHHHHHHHhhhhhhcccccCCCceeEEEecCcccccceEEEEEEEEechheeecCCCCceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHhhHHHHHHHHHHHHHHhhhhcccchhhhccCCCccccccccchhhhhhcccccccCcCcccccccccc
Q 042625 1584 LIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMF 1663 (2346)
Q Consensus 1584 lIqIFRaHLWqkIHeSiV~dlcqvld~e~~~L~I~~Vqke~iHPRKSYkmnSScADI~L~~~~~W~vskPsll~d~~d~~ 1663 (2346)
||||||+|||||||||||.|||||||+|||+||||+|||||||||||||||||||||+|.++|.|.||+||||+|++|.+
T Consensus 1602 lIQIFR~hLWqkIHESvV~dlCqvld~eldvlqiEtv~ketvHpRKSYkmnSScADIll~~~~~w~Vs~Psll~e~rD~~ 1681 (2365)
T COG5178 1602 LIQIFRNHLWQKIHESVVGDLCQVLDKELDVLQIETVQKETVHPRKSYKMNSSCADILLSGAYDWCVSSPSLLLEERDGG 1681 (2365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccccccchHHHHHhhhhhhhccCCchhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEEEEeeccCCCCchhhHHHHhhcccccCCCcccccCCCceEEeeeeccccccccccCCCCcHHHHHHHHHH
Q 042625 1664 DQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNK 1743 (2346)
Q Consensus 1664 ~~~~t~k~WiDvQLRWGDyDSHDIerY~RakfldYttd~~s~YPSptG~iI~iDLaYN~~sayG~w~~glk~li~~am~~ 1743 (2346)
++..|||+||||||||||||||||+||+||||||||||++|+||||||+|||||||||||||||||++|||||||++|.+
T Consensus 1682 ~~~~tnk~WiDVQLR~GDYDshdi~rY~RakFldyttD~qsmYPsptGv~igiDLcYNm~saYGNw~~glKpliq~SM~~ 1761 (2365)
T COG5178 1682 SNVRTNKLWIDVQLRWGDYDSHDIHRYARAKFLDYTTDPQSMYPSPTGVVIGIDLCYNMWSAYGNWNEGLKPLIQSSMER 1761 (2365)
T ss_pred ccceeeeeEEEEEEeecCccccCHHHHHHhhhhhcccChhhcccCCCceEEEEeehhhhhhhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCchhHHHHHHHHhhcccccCCCCCcccCCCChhhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEec
Q 042625 1744 IMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNP 1823 (2346)
Q Consensus 1744 imk~NpaL~vLRERIRKgLQLYsSe~~e~~l~s~Ny~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP 1823 (2346)
|||+||||||||||||||||||+|+|+|+||||+||+|||||++.+|||||||||||+|||||||+||||||||||+|||
T Consensus 1762 ImkanpaLyvLRERiRKgLQlY~S~~qe~~l~ssnyaElfsN~i~LFvddtnVyrvt~hktfEgn~ttk~ing~iFvlnP 1841 (2365)
T COG5178 1762 IMKANPALYVLRERIRKGLQLYTSEPQEQYLSSSNYAELFSNSIDLFVDDTNVYRVTLHKTFEGNLTTKPINGAIFVLNP 1841 (2365)
T ss_pred HHhhCcHHHHHHHHHHHhhhhhhcCcchhhccccchHHHhcCccceEecCceeeeeehhhhhccccccccccceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeccccccchhhhhhhhhhHHHHHHHhhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccc
Q 042625 1824 RTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP 1903 (2346)
Q Consensus 1824 ~TGqLflKiihtsvwagqKRl~QlakwktAeEvaalirSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lp 1903 (2346)
+||+||||||||||||||||++|||||||||||+||+||||+||||||||||||+|||||||||||||||+||||||++|
T Consensus 1842 ~tG~LflKvihtsvwaGqkrl~qlaKwktAeeV~aL~rslp~EEqpkqiIVtrk~MlDplEvh~lDfPnIsir~~el~lP 1921 (2365)
T COG5178 1842 ATGNLFLKVIHTSVWAGQKRLIQLAKWKTAEEVFALGRSLPVEEQPKQIIVTRKSMLDPLEVHILDFPNISIRTCELALP 1921 (2365)
T ss_pred CCCcEEEEEeecccccchhHHHHHHhHhhHHHHHHHhhcCChhhcCceeEEehhhhcChHHhhhccCCCcceecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccchhccCCCceEEeeehhhHhhccChhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCC
Q 042625 1904 FQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLS 1983 (2346)
Q Consensus 1904 F~a~~ki~k~~dlil~atepqm~lfNlYDdWL~siSsyTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPsls 1983 (2346)
|+|+|+|+|+.|+|++|||||||+||||||||+++|||||||||+|+||||+||+|+||+||+||++++|+.+|+||.||
T Consensus 1922 Fsavm~idki~d~ilratEpqmvlfNlYddWl~~~SsyTaFsRL~Lvlral~vnee~~k~il~~d~si~~k~nhlWP~f~ 2001 (2365)
T COG5178 1922 FSAVMGIDKIRDLILRATEPQMVLFNLYDDWLQETSSYTAFSRLLLVLRALDVNEERVKEILRPDKSIITKINHLWPGFS 2001 (2365)
T ss_pred hHhhhchHHHHHHHHhccCceEEEEehhhhHHHhhhhHHHHHHHHHHHHHhccCHHHHHHhcCCCccceeeecccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCcCCccchhhhhhceeccccCCCchhHHHHHHHHHHhhhhc--ceEEEEEeeeccc
Q 042625 1984 DDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEAS--QLTAVTTKTTNVH 2061 (2346)
Q Consensus 1984 deeWi~vE~~LkDlIl~dy~kk~nV~~~sLtqsEirDIILG~ei~~pS~~rq~~~eie~~~~~~~--~~t~~~t~t~n~~ 2061 (2346)
|+|||++|+|||||||++||+|+|||+++|||||||||||||.|++||.+||++||+|+|..+.. ..|+++|+|.|++
T Consensus 2002 D~qWi~~E~qlrDLIl~~Y~~k~nin~s~LtqsEvrDIilG~~i~aps~~rq~~ae~ekqn~e~a~~~~t~v~tktin~~ 2081 (2365)
T COG5178 2002 DSQWIKKEIQLRDLILDRYCSKHNINPSGLTQSEVRDIILGFRISAPSGARQETAETEKQNSEKALSRPTNVSTKTINGW 2081 (2365)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCccccchhHhhhhheeeeecCcccchhhhhhhhhccchhhhcCCceeeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999998877654 4899999999999
Q ss_pred CceEEEEecCcccccccccchhhhHhHhhhccccccccceeecccccccc-ccEEEechhHHHHHHHhccccceEEEEEe
Q 042625 2062 GDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKET-GYTYIMPKNILKKFICIADLRTQISGYLY 2140 (2346)
Q Consensus 2062 G~~i~~~t~s~yE~~~f~skt~WR~Rai~~~~L~lr~~~i~v~~~d~~e~-~~tyVLPKNLLKKFI~ISDlRTQIaGyLY 2140 (2346)
|++++|++++-||.++|+|+++||++||+++.|++|++||||++|++.++ ..+|+||+|||+||++|||+++|+|||+|
T Consensus 2082 g~e~Vv~~~~~ye~e~fssk~eWr~~ai~~~~L~lr~kniyv~ad~~~e~~q~~y~lP~NLl~kF~~isD~~vqvag~vy 2161 (2365)
T COG5178 2082 GREYVVLDGMIYEGEKFSSKEEWRSEAIRTGPLELRTKNIYVTADENEESIQQMYRLPLNLLEKFMRISDPHVQVAGLVY 2161 (2365)
T ss_pred cceEEEeecccccccccchHHHHHHHHHhcCCcccccccceeccchhhhhhhccccccHHHHHhhheecccceeeEEEEe
Confidence 99999999999999999999999999999999999999999999999888 69999999999999999999999999999
Q ss_pred ccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc--cCCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCC
Q 042625 2141 GISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL--NDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWD 2218 (2346)
Q Consensus 2141 G~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L--eDLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd 2218 (2346)
|+|+.|||+||||+|++||||+|+-.+|++|..+| ||.- +|||+|||||||..|+++|++.||.||+++++++ .||
T Consensus 2162 G~s~~d~p~ikeI~~~~lVPQlgs~~~vq~~s~vP-~dlp~~e~le~lGwihtq~~el~~l~~~~v~th~k~~~d~-~~d 2239 (2365)
T COG5178 2162 GKSGSDNPQIKEILSFGLVPQLGSLSGVQSSSFVP-HDLPGDEDLEILGWIHTQDDELPYLEVAGVLTHRKKIVDP-EWD 2239 (2365)
T ss_pred ccCCccCcchhheeEEEeeccccccccccccccCC-CCCCCcccceeeEEEecCCcccchhhhhhhhhhhhcccCc-ccc
Confidence 99999999999999999999999999999999999 5533 9999999999999999999999999999999986 898
Q ss_pred CCcEEEEEEeecCCeeEEEEEecCcchhcccccccCC-CCCCCCCCCCcceEeeEEeecccceEEEeeCCCCcccccccc
Q 042625 2219 GEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDT-GSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGV 2297 (2346)
Q Consensus 2219 ~~~sI~ItcsftPGS~SLsAy~LT~eG~eWG~~Nk~~-~~~~~g~~~~~~~~~q~llsd~~~g~flvP~~~~WNy~f~~~ 2297 (2346)
. |++|++.+|||+|++||.+++|||+||.+|+|+ ++...||.|+++++||+||||||.|+|+||++++|||+|+|+
T Consensus 2240 ~---v~ltv~~~pgsiSl~ay~v~keG~~Wg~~n~di~~~~a~g~ep~~~~~~qLllsdri~G~F~vP~~~vWNYnF~g~ 2316 (2365)
T COG5178 2240 A---VTLTVSYLPGSISLRAYVVKKEGCNWGSKNMDINSDEAIGVEPVLGKDCQLLLSDRIQGVFYVPEEEVWNYNFAGP 2316 (2365)
T ss_pred c---eeeeeeeccceeeeeeeeehhcccccccccccccccccccccccccccceeeeccccceEEEccccceeeeecccc
Confidence 5 999999999999999999999999999999996 778899999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEECCcccCccccCCcccccccccccccccccCCcCcCCC
Q 042625 2298 KHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 2346 (2346)
Q Consensus 2298 ~~~~~~~y~~~~~~P~~fy~~~hr~~hf~~f~~~~~~~~~~~~~~d~~~ 2346 (2346)
+|++.++|++|+|+|++||++.|||+||++|+++++++++|++++|+|+
T Consensus 2317 ~f~~~~~Y~~K~g~Pl~Fy~~~hRp~Hf~~f~el~~~~~lEe~q~D~fa 2365 (2365)
T COG5178 2317 FFDDRLEYTWKIGMPLGFYDGFHRPGHFSRFYELRAGGRLEEWQEDAFA 2365 (2365)
T ss_pred ccCccceeEEEeCCcchhhhcccccchhheeeehhcCCchhhhcchhcC
Confidence 9999999999999999999999999999999999999999999999996
No 3
>PF08083 PROCN: PROCN (NUC071) domain; InterPro: IPR012592 The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=100.00 E-value=5.2e-203 Score=1717.95 Aligned_cols=408 Identities=84% Similarity=1.437 Sum_probs=406.4
Q ss_pred CCCccccchhhcccCCCcccccCCCccccccccchhhhhhhcCCCCCCceehhhHhhhhhHHHhhhcCCCCCCcchhHHH
Q 042625 403 LYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHL 482 (2346)
Q Consensus 403 l~~~~t~~~~~l~~ap~pfn~r~g~~~ra~dvpl~k~w~~~~~~~~~p~kvrvSyqkLLK~yv~n~l~~~~~~~~~k~~l 482 (2346)
|++++|++|++|||||+|||+|+|+|+||+||||+++||+|||++++|+|||||||+||||||+|+||++++++++|+++
T Consensus 1 L~~~~t~~~~~l~~aP~Pfn~r~g~~~Ra~DvpLik~w~~e~~~~~~p~kvrvSyqkLLK~~V~n~l~~~~~k~~~k~~l 80 (408)
T PF08083_consen 1 LETENTKDGISLYWAPYPFNRRSGRTRRAQDVPLIKKWYLEHCPSGYPVKVRVSYQKLLKNYVLNELHKRKPKKKKKKNL 80 (408)
T ss_pred CCCCchHHHHHHhcCCCCCCCCCCCeeecccchhHHHHHhcCCCCCCCCeEEeEHHHHHHHHHHhhhccCCcccchHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcceEEechhHHHHHHHHHHhhhhHhHHhhhccCCceeeeccccCCccccccchhhhhhccCCchhHHHHHHHH
Q 042625 483 FRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILR 562 (2346)
Q Consensus 483 lk~lk~tkfFq~t~iDWvEaglqvcrQG~nMLnlLIhRK~L~yLhLDyNFNLKp~KtLTTKERKKSRfGnaFHL~REilr 562 (2346)
+++||+|||||+|++||||||||||+|||||||||||||||+||||||||||||||||||||||||||||||||||||||
T Consensus 81 ~k~Lk~tkfFq~T~iDWvEaglQvc~QG~nmLnllI~rK~l~yLhLDyNFnLKp~ktLTTKERKKSRfGnaFHL~REilr 160 (408)
T PF08083_consen 81 LKSLKNTKFFQQTEIDWVEAGLQVCRQGHNMLNLLIHRKNLTYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLCREILR 160 (408)
T ss_pred HHHHhcCccceeccchHHHHHHHHHHhHHHHHHHHHhhcCCCeEEeccccCcceeeccchHHHHHhhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCchHHHhhhhhHHhhccccceeeeehhhHHHHHHHhhhccchhhhccccCCCCCCCCccccccc
Q 042625 563 LTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAP 642 (2346)
Q Consensus 563 ~~KliVD~Hvq~RlGniDa~qLadgl~yiF~hvG~LTGiYRYKYk~m~QIr~cKdlKhliyyrfn~g~vgKgpG~gfW~P 642 (2346)
|+|+|||||||||+||||||||||||||||+||||||||||||||+|||||+|||||||||||||+ +||||||||||+|
T Consensus 161 ~~K~iVD~hv~~rlgnida~qLadgl~yiF~hvG~LTgiYRYKYk~m~QIr~cKdlKhliy~rfn~-~vgKgpg~gfW~P 239 (408)
T PF08083_consen 161 FTKLIVDIHVQYRLGNIDAYQLADGLQYIFNHVGQLTGIYRYKYKVMRQIRMCKDLKHLIYYRFNT-PVGKGPGCGFWAP 239 (408)
T ss_pred HHHHHhhhheeeeccCccHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCCCCCCccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhHHHHHHHhchhHHHHHHHhhhhHHhhhccccCCCcccccccccccchhHHHHHHHHHHHHHhcccccchhhHHHHHHH
Q 042625 643 MWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQH 722 (2346)
Q Consensus 643 ~WRVW~FFlRGiiPLLeRwL~nLlaRqfeGR~s~~~~K~vTKQRveS~~Dlelra~vm~dIldm~pe~i~~~k~r~iLqH 722 (2346)
+||||+|||||++||||||||||||||||||++++++|+||||||||+||+||||+|||||+||||||++|+|+|+||||
T Consensus 240 ~WRVW~FFlRGi~PLLerwL~nLlaR~feGR~~k~~~K~vTKQRveS~~Dlelr~~vm~di~~m~p~~i~q~k~k~ilqh 319 (408)
T PF08083_consen 240 SWRVWLFFLRGIIPLLERWLGNLLARQFEGRHSKGKAKTVTKQRVESHYDLELRAAVMHDILDMMPEGIKQNKAKTILQH 319 (408)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHhcCcccCCCccceeeccccccccHHHHHHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcCCCccCCCCChhHHHHHHHHHHhccceehhhhhhhHhhhccCCeechhhhhhcchhhhHHHHHHHHHHHH
Q 042625 723 LSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQH 802 (2346)
Q Consensus 723 lsEAWRCWKAnipwkvpgmp~pi~~iI~rYVK~KAdww~~~a~ynReRI~rg~tVdKtv~kKNlGRlTRL~lK~EqeRQ~ 802 (2346)
||||||||||||||+|||||+||+|||+||||+||||||++||||||||+||+||||||+|||||||||||||+|||||+
T Consensus 320 lsEAWrcWKAnipw~vpgm~~pi~~iI~rYvK~Kad~w~~~a~~~reRi~rg~~vdKtv~kKnlgRltRl~lk~eqerQ~ 399 (408)
T PF08083_consen 320 LSEAWRCWKANIPWKVPGMPPPIENIILRYVKAKADWWTSVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQERQH 399 (408)
T ss_pred HHHHHHHhhcCCCeecCCCChhHHHHHHHHHHHhhchhhhHHHHHHHHHHcCCeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCc
Q 042625 803 NYLKDGPYV 811 (2346)
Q Consensus 803 ~ylk~gpyl 811 (2346)
+|+||||||
T Consensus 400 ~~~k~gp~~ 408 (408)
T PF08083_consen 400 NYLKDGPYI 408 (408)
T ss_pred hhhccCCCC
Confidence 999999997
No 4
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=100.00 E-value=1.3e-108 Score=894.22 Aligned_cols=231 Identities=85% Similarity=1.344 Sum_probs=209.4
Q ss_pred CcccCCCChhhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhh
Q 042625 1771 EPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKW 1850 (2346)
Q Consensus 1771 e~~l~s~Ny~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~Qlakw 1850 (2346)
||+|||+||+|||+|+++||||||||||||+|+|||||++|||+|||||||||+||||||||||||||||||||+|||||
T Consensus 1 e~~lns~Ny~eLF~n~~~~fVDDtnvYrvt~h~t~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlakw 80 (231)
T PF12134_consen 1 EPFLNSQNYAELFSNQTQWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLSQLAKW 80 (231)
T ss_dssp -EEE-TTTGGGGGSSS-EEEEEETTSSEEEEEE-TTS-EEEEEE-EEEEEE-TTT-EEEEEEE-GGGGCC-SSHHHHHHH
T ss_pred CCccccccHHHHhcCCeEEEEecCceEEEEEEeeccCCceeccccceEEEEeCCCCcEEEEEEeehhccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeee
Q 042625 1851 KTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNI 1930 (2346)
Q Consensus 1851 ktAeEvaalirSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNl 1930 (2346)
||||||||||||||+||||||||||||||+|||||||+|||||+||||||+|||+|+||++|++|+|++||||||++|||
T Consensus 81 KtAEEv~alirslP~eEqPkqiIVtrk~m~dple~~lldfPnI~I~~sel~lpF~~~lk~~k~~d~vl~a~e~~m~lfnl 160 (231)
T PF12134_consen 81 KTAEEVAALIRSLPKEEQPKQIIVTRKGMLDPLEVHLLDFPNISIKGSELHLPFQALLKIEKLKDLVLKATEPQMVLFNL 160 (231)
T ss_dssp HHHHHHHHHHHHS-CCCSGSEEEECSGGCHHHHHHHTTTTTTCEEEEESCTSTGGGGGGSHHHHHHHHH-SS-EEEEEET
T ss_pred hhHHHHHHHHHhCCHhhCCceEEEecHHHhhHHHHHhhhCCCeeEeccccccCHHHHhhHHHHHHHHHhccCCceEEEeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhccChhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHH
Q 042625 1931 YDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSD 2001 (2346)
Q Consensus 1931 YDdWL~siSsyTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~d 2001 (2346)
|||||+|||||||||||+|||||||||++|||+||+||+++++++||+||+|||+|||+||++||||||+|
T Consensus 161 YDdWL~siS~~TAFsRLiLILR~l~vn~~ktk~iL~p~~~~~~~~~h~WPtlsd~eWi~vEi~LkDLIl~D 231 (231)
T PF12134_consen 161 YDDWLKSISPYTAFSRLILILRALHVNNEKTKDILRPDKNVITQPHHIWPTLSDEEWIEVEIQLKDLILND 231 (231)
T ss_dssp TTTGGGTS-HHHHHHHHHHHHHHHHH-HHHHHHHCTSSTTS-B-TT-SSB---HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcchHHHHHHHHHHHHHhcCChHhhhhhccCCCCccccccccCCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 5
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8. Members of this family are found in pre-mRNA-processing factor 8 (Prp8) which is a critical splicing factor, interacting with several other spliceosomal proteins, snRNAs, and the pre-mRNA, thus organizing and stabilizing the spliceosome catalytic core. Prp8 is one of the largest and most highly conserved of nuclear proteins, occupying a central position in the catalytic core of the spliceosome. Its C-terminal domain exhibits a JAB1/MPN-like core similar to deubiquitinating enzymes, but does not show catalytic isopeptidase activity, possibly because the putative isopeptidase center is covered by insertions and terminal appendices that are grafted onto this core, thus impairing the metal binding site. It is proposed that this domain is a protein interaction domain instead of a Zn(2+)-dependent metalloenzyme as proposed for some MPN proteins. The DEAD-box protein Brr2 and t
Probab=100.00 E-value=2.8e-90 Score=774.62 Aligned_cols=251 Identities=74% Similarity=1.327 Sum_probs=247.9
Q ss_pred cccchhhhHhHhhhccccccccceeeccccccccccEEEechhHHHHHHHhccccceEEEEEeccCCCCCCCceeEEEEE
Q 042625 2078 FGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIA 2157 (2346)
Q Consensus 2078 f~skt~WR~Rai~~~~L~lr~~~i~v~~~d~~e~~~tyVLPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrcIV 2157 (2346)
|+||||||+|||++++|++|++||||+++|+.+++++|||||||+||||+|||+||||||||||++|+||++||||+|||
T Consensus 1 F~Skt~WR~Raia~~~l~lr~~~Iyv~~~~~~~~~~t~vlPknllkkFi~iaD~rtQ~~GyLyG~~~~d~~~vkeI~cIv 80 (252)
T cd08056 1 FSSKTDWRVRAIAATNLHLRTKNIYVSSDDIKETGYTYILPKNLLKKFISISDLRTQIAGYLYGKSPPDNPQVKEIRCIV 80 (252)
T ss_pred CCccchHHHHHHHhhhhhhhhccEEEcccccccCCCEEEeCHHHHHHHHHHhhhcceEEEEEeccCCCCCCCeEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccceeeCCCCCCCcccccCCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEE
Q 042625 2158 MPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLT 2237 (2346)
Q Consensus 2158 IvPQlGt~~tVelp~~lP~hd~LeDLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLs 2237 (2346)
||||+||+++|++|+++|+|++++|||+||||||||+|+++|||+||+|||+++++|++||++++|+|||||+|||||++
T Consensus 81 ipPQ~gt~~sv~l~~~~~~~~~l~~Le~LGWIHTqp~e~~~Lss~Dv~tha~~~~~~~~w~~~~~V~it~SftpGs~sl~ 160 (252)
T cd08056 81 LVPQLGTHQTVTLPQQLPQHEYLEDLEPLGWIHTQPNELPQLSPQDVTTHAKILADNPSWDGEKTVILTCSFTPGSCSLT 160 (252)
T ss_pred ECCEeCCcCcEECCccCccchhhCCCEeeEEEEcCCCCccccCHHHHHHHHHHHHhccccCCCcEEEEEEcCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcchhcccccccCC-CCCCCCCCCCcceEeeEEeecccceEEEeeCCCCccccccccccCCCceEEEEECCcccCc
Q 042625 2238 AYKLTPSGYEWGRVNKDT-GSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYY 2316 (2346)
Q Consensus 2238 Ay~LT~eG~eWG~~Nk~~-~~~~~g~~~~~~~~~q~llsd~~~g~flvP~~~~WNy~f~~~~~~~~~~y~~~~~~P~~fy 2316 (2346)
||+||++|++||++|+|. ..+|+||+|+|++||||||||||+||||||++|+|||+|||++|+++|+|+|+||+|++||
T Consensus 161 ay~LT~~G~~wg~~n~d~~~~~p~g~~~~~~ek~qllLSd~~~GfflVP~~~~WNY~f~g~~~~~~~~y~l~~~~P~~Fy 240 (252)
T cd08056 161 AYKLTPEGYEWGKQNKDLGNNTPKGYSPSFYEKVQLLLSDRFLGFFLVPEDGVWNYNFMGAKHSPNMKYDLKLDIPKEFY 240 (252)
T ss_pred EEecCHHHHHHHHhCccccccCCCCCCccccceeEEEEEeeeeEEEEccCCCcccccccccccCCCCceeEEeCCchhhh
Confidence 999999999999999996 4569999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccc
Q 042625 2317 HEDHRPTHFLEF 2328 (2346)
Q Consensus 2317 ~~~hr~~hf~~f 2328 (2346)
||+|||.||++|
T Consensus 241 ~e~HRp~HFl~F 252 (252)
T cd08056 241 HELHRPTHFLQF 252 (252)
T ss_pred ccccCchhhhcC
Confidence 999999999998
No 6
>PF10596 U6-snRNA_bdg: U6-snRNA interacting domain of PrP8; InterPro: IPR019580 This entry represents the interacting site for U6-snRNA, which is part of U4/U6. U5 tri-snRNPs complex of the spliceosome is a prime candidate for the role of cofactor in the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [].
Probab=100.00 E-value=3.7e-91 Score=724.72 Aligned_cols=160 Identities=94% Similarity=1.531 Sum_probs=159.1
Q ss_pred chhhhcccCCCcccccccccCcccccCCchhHHHHHhcCccccccccccccccCCCccccccccccccccccchhhhhHH
Q 042625 1453 FKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNA 1532 (2346)
Q Consensus 1453 fk~y~~~k~npFwWT~~~HDGKLWnLn~YrtDvIqaLGGvE~ILEHTLFkgT~F~sWeglFWEkasgfE~s~k~kkLTnA 1532 (2346)
||+|++.|.|||||||++|||||||||+||+|||+||||||+||||||||||+||+|||+||||+||||++||+||||||
T Consensus 1 fk~y~~~k~~pfwwt~~~hdGklw~L~~yr~dvi~aLGGve~IleHtLfk~T~f~~Weglfwek~sgfE~~~k~~kLt~a 80 (160)
T PF10596_consen 1 FKQYQLMKYNPFWWTNQRHDGKLWNLNAYRTDVIQALGGVEGILEHTLFKATGFPSWEGLFWEKASGFEESMKFKKLTNA 80 (160)
T ss_pred CCcchhccCCcceeeeecCCeeeechhhhhhhhhccCCCcceEEEeEeeeccCCCccceEEEecCcchhhhhhhhHhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCcceeeeccccccccceeeeeeeeecceeeeeccccCcchhhHHHHHHHhhhhHhhHHHHHHHHHHHHHHh
Q 042625 1533 QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQEL 1612 (2346)
Q Consensus 1533 QRsGLsQIPNRRFtLWWSPTINRanVYVGfqvQlDlTGIfMhGKipTLKISlIqIFRaHLWqkIHeSiV~dlcqvld~e~ 1612 (2346)
||+||||||||||||||||||||||||||||||||||||||||||||||||||||||+|||||||||||+||||+||+||
T Consensus 81 qrsgl~qiPNRrf~LWWsPtINR~nvyvGfqvqldlTgIfmhGK~ptlkiS~i~ifr~~lwqkih~svv~dl~~~~~~~~ 160 (160)
T PF10596_consen 81 QRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQEL 160 (160)
T ss_pred cccCcccccccccccccCCccccCCceEEEEeeccccceeccCcCchhhhhhhhcccccchheehHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 7
>PF08082 PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; InterPro: IPR012591 Pre-mRNA-processing-splicing factor 8 is a central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. It interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes. It is part of the U5 snRNP complex, and of U5.4/6 and U5.U4atac/U6atac snRNP complexes in U2- and U12-dependent spliceosomes, respectively. It is also found in a mRNA splicing-dependent exon junction complex (EJC) with SRRM1 where it interacts with U5 snRNP proteins SNRP116 and WDR57/SPF38 [, ].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=100.00 E-value=6.8e-81 Score=646.01 Aligned_cols=152 Identities=86% Similarity=1.490 Sum_probs=151.2
Q ss_pred ccCCChHHHHhhhcccCCCCccccccccccccccccccHHHHHHHhhcCCCCccccceeeEEEeeeceEEeeccccccch
Q 042625 77 KEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVE 156 (2346)
Q Consensus 77 k~~mppehlrkii~~~~dms~~~~~~dkr~~lgaLky~PhAi~klLenmPmPWE~vr~V~VLYHitGAITFVnEiPrViE 156 (2346)
|++||||||||||+|||||||+||++|||+||||||||||||+||||||||||||+|+|+||||+|||||||||+|||||
T Consensus 1 K~~mPpehlRkii~dhgdms~~k~~~dKr~~lGaLKy~PhAv~kLLEnmPmPWE~~r~VkVlyHitGaiTfVne~prvie 80 (152)
T PF08082_consen 1 KEEMPPEHLRKIIKDHGDMSSKKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQVREVKVLYHITGAITFVNEIPRVIE 80 (152)
T ss_pred CCCCCHHHHHHHHHccCcccccccccchHHHHhHHhhhhHHHHHHHHcCCcchhhheeeEEEEeecceEEEeccCcccch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHhhhccccccccccCCCCCCCCCCCccccCCCCCCCccccccCCccccccccccccC
Q 042625 157 PIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYD 228 (2346)
Q Consensus 157 pvy~AQW~tmWi~MRrEKrdRrhFKRmrfPpFDDeEPpldy~dnI~dvepleaIq~~Ld~~~d~~v~dWfYd 228 (2346)
|+|+||||+||+|||||||||||||||||||||||||||||+|||+|+||++||||+||+|||++|.|||||
T Consensus 81 pvy~aQW~~mW~~mRreKrdr~hfkRmrfPpFDDeEPpldy~dni~dvep~~~i~~~ld~~~d~~v~dwfyd 152 (152)
T PF08082_consen 81 PVYIAQWSTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYGDNILDVEPLEAIQMELDEEEDAAVIDWFYD 152 (152)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceeeeecCCCCCCCCCcchhhccccCCCCccccccccccccchHhhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>PF10597 U5_2-snRNA_bdg: U5-snRNA binding site 2 of PrP8; InterPro: IPR019581 The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis []. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [].
Probab=100.00 E-value=8.9e-69 Score=546.84 Aligned_cols=134 Identities=87% Similarity=1.338 Sum_probs=133.4
Q ss_pred CcceeeccccccccccceeeeecCHHHHHHHHHHHHHHhHhcCcchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Q 042625 1221 RDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLV 1300 (2346)
Q Consensus 1221 ~e~~W~L~n~~tke~ta~a~l~Vs~e~i~~F~nrirqIlmssgStTFtKIa~KWNt~li~l~tYfREA~~~T~~lld~Lv 1300 (2346)
+||+|+|+|+.|||+||+|||+||+++|++|+||||||||+||||||+||||||||+|||+|+|||||+++|++|+|+|+
T Consensus 2 ~~~~w~l~~~~tke~ta~a~l~vS~~~i~~F~~rir~ilm~sgsttF~Ki~~KWNt~li~l~~YfREA~~~T~~lldil~ 81 (135)
T PF10597_consen 2 KEGVWDLQNESTKERTAQAFLRVSDESIKNFENRIRQILMSSGSTTFTKIANKWNTALIGLMTYFREAIVNTEELLDILV 81 (135)
T ss_pred CcceeeccchhhhhhhhHHHhhcCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCccccCCccccccccccccccccccCccccc
Q 042625 1301 KCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYS 1354 (2346)
Q Consensus 1301 k~E~KIq~RIK~GLNSKMPsRFPpvvFYtPKElGGLGMLS~ghilIp~SDL~~s 1354 (2346)
|||+|||||||+|||||||+||||||||||||||||||||||||+||||||+||
T Consensus 82 k~E~kIq~RIK~gLNSkmPsRFPpvvFYtPKElGGLGMLS~ghilip~sDl~~s 135 (135)
T PF10597_consen 82 KCENKIQNRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHILIPQSDLRYS 135 (135)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCCeeecChhhccccceecccceeccchhcccC
Confidence 999999999999999999999999999999999999999999999999999997
No 9
>PF08084 PROCT: PROCT (NUC072) domain; InterPro: IPR012984 The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [].; PDB: 2P87_A 2P8R_A 3SBG_A 2OG4_A.
Probab=100.00 E-value=1.6e-48 Score=400.03 Aligned_cols=124 Identities=65% Similarity=1.212 Sum_probs=75.4
Q ss_pred EEEEEEeecCCeeEEEEEecCcchhcccccccC-CCCCCCCCCCCcceEeeEEeecccceEEEeeCCCCccccccccccC
Q 042625 2222 CIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKD-TGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHT 2300 (2346)
Q Consensus 2222 sI~ItcsftPGS~SLsAy~LT~eG~eWG~~Nk~-~~~~~~g~~~~~~~~~q~llsd~~~g~flvP~~~~WNy~f~~~~~~ 2300 (2346)
+|+||||||||||||+||+||++|||||++|+| .+.+|+||+|+|++||||||||||+||||||++++|||+|||++|+
T Consensus 1 ~i~it~sftpGSvsL~Ay~LT~~G~eWg~~nkD~~~~~p~g~~p~~~ek~QllLSdr~~GfFlVP~~~~WNY~Fmg~~~~ 80 (125)
T PF08084_consen 1 TITITCSFTPGSVSLSAYKLTPEGYEWGRQNKDLISDNPQGFSPSFYEKVQLLLSDRILGFFLVPEDGVWNYNFMGAKFS 80 (125)
T ss_dssp -EEEEEEEETTEEEEEEEEE-HHHHHHHHCTTT--SS--TT--GGGEEEEEEEEETTS--EEEEETTS--B-TT-GGG--
T ss_pred CEEEEEeccCCceEEEEEecCHHHHHHHhhcccccccCCCCCCcchhheeeeeeecceeeEEEccCCCcccceecccccC
Confidence 589999999999999999999999999999999 5789999999999999999999999999999999999999999999
Q ss_pred CCceEEEEECCcccCccccCCcccccccccccccccccCCcCcCC
Q 042625 2301 VSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTF 2345 (2346)
Q Consensus 2301 ~~~~y~~~~~~P~~fy~~~hr~~hf~~f~~~~~~~~~~~~~~d~~ 2345 (2346)
++|+|+||||+|++||||+|||.||++|++++++++++||+||+|
T Consensus 81 ~~~~Y~lkld~P~~FY~e~HRP~HFl~F~~~~~~e~~~aD~ed~F 125 (125)
T PF08084_consen 81 PNMKYDLKLDIPKEFYHELHRPTHFLNFAELEEDEELEADQEDVF 125 (125)
T ss_dssp TT----EEE-----TT-CCCS-S----------------------
T ss_pred CCCeeEEEeCCchhhhCcccCHHHHHhHhhccccccccccccCCC
Confidence 999999999999999999999999999999988888899999997
No 10
>PF10598 RRM_4: RNA recognition motif of the spliceosomal PrP8; InterPro: IPR019582 The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is the pre-mRNA-processing-splicing factor 8 (PrP8) which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molecular rearrangements that occur there, and has recently come under the spotlight for its role in the inherited human disease, Retinitis Pigmentosa []. The RNA-recognition motif of PrP8 is highly conserved and provides a possible RNA binding centre for the 5-prime SS, BP, or 3-prime SS of pre-mRNA which are known to contact with Prp8. The most conserved regions of an RNA- recognition-motif (RRM) are defined as the RNP1 and RNP2 sequences. Recognition of RNA targets can also be modulated by a number of other factors, most notably the two loops beta1-alpha1, beta2-beta3 and the amino acid residues C-terminal to the RNP2 domain [].
Probab=100.00 E-value=3.8e-44 Score=347.95 Aligned_cols=93 Identities=80% Similarity=1.304 Sum_probs=91.4
Q ss_pred HhhcHHHHHHHHHHHhcchhhhhhhhcCceEEEeeccccccccccccccchhHHHHHHHHHHHHHHHhcccccccccCCC
Q 042625 996 EKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPP 1075 (2346)
Q Consensus 996 ekiD~tlLnrLLrli~D~nladYitsKnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDLliLG~~ra~e~ag~~ 1075 (2346)
||||+|+|||||||||||||||||||||||+|+||||+|||+||+||||||||||+||||||+||||||++||+|+||||
T Consensus 1 ekiD~tllnrLLrLi~D~niadYitaKnNv~i~yKDM~h~N~yGlirGlqFssFi~QyyglvlDLliLG~~ra~eiagp~ 80 (93)
T PF10598_consen 1 EKIDLTLLNRLLRLIMDHNIADYITAKNNVVINYKDMNHTNSYGLIRGLQFSSFIFQYYGLVLDLLILGLQRASEIAGPP 80 (93)
T ss_pred CcccHHHHHHHHHHHhCchHHHHHHhhhcceEEEeccHHHhHhcccchhhHHHHHHHHHHHHHHHHHHccchHHHHcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeecccc
Q 042625 1076 HMPNEFITYWDTK 1088 (2346)
Q Consensus 1076 ~~pn~f~~f~~~~ 1088 (2346)
++||+|++|+|.+
T Consensus 81 ~~pN~f~~f~~~~ 93 (93)
T PF10598_consen 81 QMPNEFLQFKDKE 93 (93)
T ss_pred CCCCchhcccccC
Confidence 9999999999863
No 11
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al
Probab=99.92 E-value=1.2e-24 Score=235.67 Aligned_cols=163 Identities=28% Similarity=0.418 Sum_probs=136.6
Q ss_pred cEEEechhHHHHHHHhccccc----eEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCccc--ccCCCcc
Q 042625 2113 YTYIMPKNILKKFICIADLRT----QISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDF--LNDLEPL 2186 (2346)
Q Consensus 2113 ~tyVLPKNLLKKFI~ISDlRT----QIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~--LeDLE~L 2186 (2346)
+.++||+|++++|+++||.++ ++||||||+++. +++||+|++++||.|++.++.++......++ .++|++|
T Consensus 2 ~~l~Ipk~il~~~l~~A~~~~~~p~E~cGlL~G~~~~---~~~~I~~i~~~~q~~~~~~~~~~~~~e~~~~~~~~gle~v 78 (173)
T cd08066 2 RQVVVPADLMDKFLQLAEPNTSRNLETCGILCGKLSN---NAFFITHLIIPKQSGTSDSCQTTNEEELFDFQDQHDLITL 78 (173)
T ss_pred eEEEECHHHHHHHHHHHHhCCCCCCeEEEEEEeEcCC---CeEEEEEEEeccccCCCceecCCCHHHHHHHHHhCCCeeE
Confidence 468999999999999999996 799999998643 6899999999999999999998652211111 3899999
Q ss_pred eEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecC-cchhcccccccCCCCCCCCCCCC
Q 042625 2187 GWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLT-PSGYEWGRVNKDTGSNPHGYLPT 2265 (2346)
Q Consensus 2187 GWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT-~eG~eWG~~Nk~~~~~~~g~~~~ 2265 (2346)
||+||||++.++||+.|+.||+++++.. + +++.|+|| ||+++++||+|| ++|++|++++++.+-.|.+..+.
T Consensus 79 GwyHSHP~~~~~pS~~Dv~t~~~~~~~~----p-~~~~lIvS--p~~~~l~afrl~~~~g~~~~~~~~~~~~h~~~~~~~ 151 (173)
T cd08066 79 GWIHTHPTQTCFLSSVDLHTHCSYQLML----P-EAIAIVCA--PKYNEFGIFRLTDPPGLDEILNCKKTGFHPHPKDPP 151 (173)
T ss_pred EEEeccCCCCCccCHHHHHHHHHHHhcC----C-CeEEEEEC--CCCcEEeEEEeecCCcceecccCCcCccCCCCCCCC
Confidence 9999999999999999999999999873 4 48999999 689999999999 99999999999987778888777
Q ss_pred cceEeeEEeecccceEEEee
Q 042625 2266 HYEKVQMLLSDRFLGFYMVP 2285 (2346)
Q Consensus 2266 ~~~~~q~llsd~~~g~flvP 2285 (2346)
.+++|+=..-..-+++-+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~ 171 (173)
T cd08066 152 LYEDCGHVIWKDQLKVTVVD 171 (173)
T ss_pred cceeeeEEEEcCCCceEEEe
Confidence 88888755333335555543
No 12
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.77 E-value=2.8e-18 Score=212.54 Aligned_cols=626 Identities=21% Similarity=0.270 Sum_probs=354.9
Q ss_pred cccccCCChHHHHhhhcccCCCCcccccccccccccccc----ccHHHHHHHhhcCCCCccccceeeEEEeeeceEEeec
Q 042625 74 EAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALK----FIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVN 149 (2346)
Q Consensus 74 ~~~k~~mppehlrkii~~~~dms~~~~~~dkr~~lgaLk----y~PhAi~klLenmPmPWE~vr~V~VLYHitGAITFVn 149 (2346)
...+++|||||+|.++.++.||. |-+.+.||+. |||||+.+|+.-||||||.+|+|.+.||.+|.++||-
T Consensus 215 n~~ld~~dde~v~dw~y~sr~le------d~p~vnG~~yrrw~~~lp~m~NL~Rl~~~l~~~ird~ny~Ylf~~~sfF~a 288 (2365)
T COG5178 215 NIRLDRMDDEHVRDWVYTSRDLE------DHPSVNGAMYRRWKYMLPAMHNLLRLMPMLWESIRDVNYVYLFSGLSFFVA 288 (2365)
T ss_pred CCCcccCCcHHHHHHHhhccccc------cCCccccchhhhcccCcHHHHHHHhcccccHHHhccccEEEEecCceeeeh
Confidence 45788999999999999999993 4488999997 9999999999999999999999999999999999999
Q ss_pred cccccc---hhHHHHHHHHHHHHhhHhhhccccccccccCCCCCCCCCCCccccCCCCCCCccccccCCccccccccccc
Q 042625 150 EIPWVV---EPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWF 226 (2346)
Q Consensus 150 EiPrVi---Epvy~AQW~tmWi~MRrEKrdRrhFKRmrfPpFDDeEPpldy~dnI~dvepleaIq~~Ld~~~d~~v~dWf 226 (2346)
+.--|. -|-|...|+..---|-.|.-.+.-.|-+|+||||||-|..+++-. ....-.-|+..+
T Consensus 289 kaln~aipggpkfeply~res~e~ed~nefn~i~rii~r~pi~~ey~vafp~ly-nsrprsvav~~y------------- 354 (2365)
T COG5178 289 KALNVAIPGGPKFEPLYSRESAEFEDENEFNGIVRIIRRPPIDDEYPVAFPGLY-NSRPRSVAVECY------------- 354 (2365)
T ss_pred hhhcccCCCCcccccccccccccccchhhhcceeeEEEeCCcCCccccccchhh-cCcccceeeecc-------------
Confidence 877543 567888888888888888888999999999999999999988763 233333333321
Q ss_pred cCCCCCccccccCCCcccceecChHHHHHHHHHhhhhccccccCCccccccccccccccccccccCCCCccccccccccC
Q 042625 227 YDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEK 306 (2346)
Q Consensus 227 Yd~kpL~~~~~vng~syk~w~l~l~~m~~Lyrl~~~Llsd~~d~ny~yLFd~ksFfTaKalN~aIPgGPKFEpL~~~~~~ 306 (2346)
-.+- +. ....|.++-|.|+++.|.....+.+++-.||.-- +.
T Consensus 355 ~~p~-~~-------------------------------~v~~dEd~d~pa~f~dp~inpi~~~ql~~h~~d~------~~ 396 (2365)
T COG5178 355 GSPE-CR-------------------------------DVFLDEDEDYPANFKDPLINPILGVQLDNHPYDG------KG 396 (2365)
T ss_pred CCcc-ce-------------------------------eccCCcCccchhhhcCcccccccccccccccccC------CC
Confidence 1110 00 2234778888999999999888888887777532 23
Q ss_pred CcCCccccccccceeeccCCccceeecCCccccCCCcceeeecccccceeeeccCCCCCCccccCCcCCCCCCCCCCCCC
Q 042625 307 GDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVRLGIYHTPMVMYIKTEDPDLPAFYYDPLIHPIPSTNKERHD 386 (2346)
Q Consensus 307 ~d~d~~efn~i~~ii~r~~irteykiafP~lYns~~r~v~~~~yh~p~~~~~~~~d~~~p~f~~~~~~npi~~~~~~~~~ 386 (2346)
..|+-+ ++.|. .-+| .|+||||||.....-+....|. -+-||..-.+
T Consensus 397 s~e~s~-------v~E~~-~f~~-p~f~P~l~~e~~e~~~t~~A~~-------------------ll~~pfpfnk----- 443 (2365)
T COG5178 397 SNEESC-------VMERK-LFSE-PIFYPYLYNESTEVRTTERAHL-------------------LLKNPFPFNK----- 443 (2365)
T ss_pred Ccchhh-------hhhcC-CCCc-cccchhhccccccccchHHHHH-------------------HhcCCCCccc-----
Confidence 334443 33333 4443 4999999997665555555554 1123431111
Q ss_pred cccCCcccccCcCCCCCCCccccchhhcccCCCcccccCCCccccccccchhhhhhhcCCCCCCcee---hhhHh-hh--
Q 042625 387 DFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSDWYKEHCPPSYPVKV---RVSYQ-KL-- 460 (2346)
Q Consensus 387 ~~~lp~~~~pfl~~~~l~~~~t~~~~~l~~ap~pfn~r~g~~~ra~dvpl~k~w~~~~~~~~~p~kv---rvSyq-kL-- 460 (2346)
++ .+.......+.|.|++.+.|.|..|.+.||.+ --+|- +.
T Consensus 444 ---------------------~k------------G~~~raqdvpl~k~w~l~hc~~e~pvkv~vsyqkLLknyv~N~lh 490 (2365)
T COG5178 444 ---------------------GK------------GRAERAQDVPLDKPWLLGHCLQERPVKVPVSYQKLLKNYVRNMLH 490 (2365)
T ss_pred ---------------------Cc------------chhhhhhcCcccchHHhcCCchhcCCccchhHHHHHHHHHHhhhc
Confidence 11 11112223344445555555544444444421 11110 00
Q ss_pred -------hhHHHhhhcCCCCCCcchhH--------------HHHHHh---ccCcceEEechhH-----------------
Q 042625 461 -------LKCFVLNELHHRPPKAQKKK--------------HLFRSL---QATKFFQTTELDW----------------- 499 (2346)
Q Consensus 461 -------LK~yv~n~l~~~~~~~~~k~--------------~llk~l---k~tkfFq~t~iDW----------------- 499 (2346)
-+.+++++|+.++.-.+.-. +.|..| |+-.|- .+||
T Consensus 491 ~t~p~~h~~t~lLk~LKNTkyFQ~T~IDWVEAGLQlcrQGhnML~llihRKgLtYL---hLDyNfNLKPtktLTTKERKK 567 (2365)
T COG5178 491 KTRPRPHTNTHLLKELKNTKYFQRTEIDWVEAGLQLCRQGHNMLSLLIHRKGLTYL---HLDYNFNLKPTKTLTTKERKK 567 (2365)
T ss_pred ccCCCCCcchHHHHHhhcccchhhcccHHHHHHHHHHHHHHHHHHHHHHhcCCeEE---EeecccCcccccccchhhhhh
Confidence 11234444444433111100 111111 111111 1111
Q ss_pred --HHHHHHHHHhhhhHhHHhhh------ccCCceeeeccc--cCCccccccchhhhhhccCCchhHHHHHHHH--HHHHH
Q 042625 500 --AEAGLQVCKQGYNMLNLLIH------RKNLNYLHLDYN--FNLKPVKTLTTKERKKSRFGNAFHLCREILR--LTKLV 567 (2346)
Q Consensus 500 --vEaglqvcrQG~nMLnlLIh------RK~L~yLhLDyN--FNLKp~KtLTTKERKKSRfGnaFHL~REilr--~~Kli 567 (2346)
|--+.++.|.=-.|+.++.- --|+.--.|-.| +-|-.+-+||-==|=| |.||+.|-+ =.|+|
T Consensus 568 SR~GnsfHLmRE~Lk~~KliVD~HVqfRlGniDayqLadgvhyilNhvGqLTGiYRYK------YklM~QIraCKd~Khl 641 (2365)
T COG5178 568 SRVGNSFHLMREMLKFIKLIVDIHVQFRLGNIDAYQLADGVHYILNHVGQLTGIYRYK------YKLMKQIRACKDWKHL 641 (2365)
T ss_pred hcccchHHHHHHHHHHHHHHHHhhhhhhccCchHHHHhcchhHHhhcchhheehhHHH------HHHHHHHHHhhhHHHH
Confidence 11233444443333333321 112221111111 2345677777766655 445555532 24444
Q ss_pred HhhhhhhccCCCc-----hHHHhhhhhHHhhcc----------------ccceeee----------ehhhH----HHHH-
Q 042625 568 VDANIQFRLGNVD-----AFQLADGLQYTFSHV----------------GQLTGMY----------RYKYR----LMRQ- 611 (2346)
Q Consensus 568 VD~Hvq~RlGniD-----a~qLadgl~yiF~hv----------------G~LTGiY----------RYKYk----~m~Q- 611 (2346)
++------+|.=- +.|---=+.++=.|| |.-+++= -|.-. +|..
T Consensus 642 iyY~fn~g~gkgpgcgfW~p~WRvWlfflRG~iPLLeRyignLvtRqfEGRs~~~~K~~tKQR~ds~yDleLr~~vM~di 721 (2365)
T COG5178 642 IYYAFNEGVGKGPGCGFWGPQWRVWLFFLRGHIPLLERYIGNLVTRQFEGRSDYNPKPLTKQRSDSGYDLELRRQVMADI 721 (2365)
T ss_pred HHHHhhcCCCCCCCCCcccHHHHHHHHHHhcccHHHHHHHhHHHHHHhccccCCCccchhhhhccccccHHHHHHHHHHH
Confidence 4321110011000 011100011111111 1111110 12222 3322
Q ss_pred -------HHhhhccchhhhccccCCCCCCCCccccccchhHHHHHHHhchhHHHHHHHhhhhHHhhhccccCCCcccccc
Q 042625 612 -------IRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTK 684 (2346)
Q Consensus 612 -------Ir~cKdlKhliyyrfn~g~vgKgpG~gfW~P~WRVW~FFlRGiiPLLeRwL~nLlaRqfeGR~s~~~~K~vTK 684 (2346)
||+.|. +.|+- --.++||-|--=.-=.||++-.=+-+..-|.. .|+ +--.|
T Consensus 722 l~mlpe~irq~k~-rtiLQ---------------HlsEAWRCWKANiPw~vpg~papi~~vi~ryi---kSk--ad~wt- 779 (2365)
T COG5178 722 LSMLPEGIRQTKV-RTILQ---------------HLSEAWRCWKANIPWHVPGEPAPILEVIRRYI---KSK--ADLWT- 779 (2365)
T ss_pred HHhcCchhhhhHH-HHHHH---------------HHHHHHHHhhcCCCccCCCCcccHHHHHHHHH---hch--hhhee-
Confidence 344443 34442 23579999965544455555444444554431 222 22222
Q ss_pred cccccchhHHHHHHHHHHHHHhcccccchhhHHHHHHHhHHHHhhhhcCCCccCCCCChhHHHHHHHHHHhccceehhhh
Q 042625 685 QRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVA 764 (2346)
Q Consensus 685 QRveS~~Dlelra~vm~dIldm~pe~i~~~k~r~iLqHlsEAWRCWKAnipwkvpgmp~pi~~iI~rYVK~KAdww~~~a 764 (2346)
.-+||. |.+|.-- .++...|++ ..+..++..|||++.+|..+.+
T Consensus 780 --s~ahfn-------rEri~Rg--A~V~kt~~k-------------------------knLgRltrlwvk~eqErq~~~~ 823 (2365)
T COG5178 780 --SSAHFN-------RERISRG--AGVGKTKEK-------------------------KNLGRLTRLWVKLEQERQVDSA 823 (2365)
T ss_pred --hhchhh-------HHHHhcc--ccchHHHHH-------------------------HHHHHHHHHHHHhhHHHHHhHH
Confidence 234554 2233321 234444433 2456788999999999998877
Q ss_pred hhhHhhhccCCeechhhhhhcchhhhHHHHHHHHHHHHhhhcCCCCcChhhHHHHHHHHHHHHhcCCCccCCCCCCCccc
Q 042625 765 HYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFAPIPFPPLSYKH 844 (2346)
Q Consensus 765 ~ynReRI~rg~tVdKtv~kKNlGRlTRL~lK~EqeRQ~~ylk~gpyls~eeavaIy~~~v~WLesr~f~~IpFP~~~yK~ 844 (2346)
-- |.. -+++.+|-+|.+|++||++.+-.|.. -|.+++.|+++||..+.+.|.+..-+.|+||. +...
T Consensus 824 k~-------Gp~-~t~eEa~~i~~i~v~wlesR~f~pip----fPpL~yk~dtkilvLalE~lk~~yt~kirln~-s~rE 890 (2365)
T COG5178 824 KV-------GPK-STKEEAKRIGKITVLWLESRMFEPIP----FPPLRYKEDTKILVLALEYLKSKYTGKIRLNE-STRE 890 (2365)
T ss_pred hh-------CCc-CCHHHHHHHHHHHHHHHHhcccCCCC----CCCcCCcccchhhhhhHHHHHhhccccccCCh-hhHH
Confidence 52 443 46678899999999999977655554 69999999999999999999999999999998 6677
Q ss_pred cchhHHHHHHHHHhhhh--hhhccchhhHHHHH-HHHHHhcChHHH-----HHHHHHHHhhcccccc
Q 042625 845 DTKLLILALERLKESYS--VAVRLNQLQREELG-LIEQAYDNPHEA-----LSRIKRHLLTQRAFKE 903 (2346)
Q Consensus 845 DtKlL~LALe~Lke~y~--~~~rLn~~qrEEl~-lIE~Aydnphet-----L~rIK~~LLtqR~FKe 903 (2346)
+.-+|.-|+++=-+.-+ -|+-|+|-.=.|.+ .+-.-||+-.++ +.+|-...|-|=-|=|
T Consensus 891 Elal~e~Aydnphdtl~rIKk~LLTqR~FKeVgit~m~~y~~~ipvYsVdp~Eki~DAyLdqYLwyE 957 (2365)
T COG5178 891 ELALLEKAYDNPHDTLFRIKKSLLTQRSFKEVGITLMRHYDGAIPVYSVDPVEKIVDAYLDQYLWYE 957 (2365)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhhhhhhhcceeHhhhcCCccceeecChHHHHHHHHHHHHHhhh
Confidence 77888888776554432 13446655534432 122335543332 4566666666544433
No 13
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-16 Score=184.95 Aligned_cols=129 Identities=24% Similarity=0.356 Sum_probs=110.1
Q ss_pred ccEEEechhHHHHHHHhccccce----EEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc--cCCCc
Q 042625 2112 GYTYIMPKNILKKFICIADLRTQ----ISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL--NDLEP 2185 (2346)
Q Consensus 2112 ~~tyVLPKNLLKKFI~ISDlRTQ----IaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L--eDLE~ 2185 (2346)
-+..+||..+.+.|++.|-.+|- +||.|||+ ...|... |..++||=|-+++++|.+-++---++.= .+|-+
T Consensus 251 lr~v~ip~~l~~~Fl~la~~NT~knlETCGiL~g~-L~~n~f~--IThliiPkQeatsd~C~t~neeelF~vQdq~~L~t 327 (424)
T KOG2880|consen 251 LRDVHIPERLMEVFLQLAKSNTKKNLETCGILAGK-LERNEFY--ITHLIIPKQEATSDSCNTMNEEELFEVQDQHELLT 327 (424)
T ss_pred ceEEEecHHHHHHHHHHHhhcccccchHHHHhhhH-hhcCcEE--EEEEEeecccCCCccccccCHHHHheeccccccee
Confidence 38899999999999999999987 99999997 7777666 8999999999999999998754323222 78999
Q ss_pred ceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecC-cchhcccc
Q 042625 2186 LGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLT-PSGYEWGR 2250 (2346)
Q Consensus 2186 LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT-~eG~eWG~ 2250 (2346)
||||||||+++||||+.|+|||.+++-+.| ++|+|+||++. =+-+.|+|| +.|.+-=+
T Consensus 328 lGWIHTHPTQt~FmSSVDlHTHcSYQiMlP-----EAiAIV~aPk~--~~tGiFrLt~~~Gm~~i~ 386 (424)
T KOG2880|consen 328 LGWIHTHPTQTCFMSSVDLHTHCSYQIMLP-----EAIAIVCAPKS--KTTGIFRLTDPGGMEVIR 386 (424)
T ss_pred eeeeecCCccchhheeccccccceeeeecc-----hheeEEecccc--CCcceEEecCCcchHHHh
Confidence 999999999999999999999999998874 48999999884 477899999 77764433
No 14
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J
Probab=99.02 E-value=2.4e-10 Score=113.88 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=81.7
Q ss_pred HHHHHHhccc--cceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCC--CCCCcccccCCCcceEEeeCCCCCC
Q 042625 2122 LKKFICIADL--RTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPS--ALPEHDFLNDLEPLGWMHTQPNELP 2197 (2346)
Q Consensus 2122 LKKFI~ISDl--RTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~--~lP~hd~LeDLE~LGWIHTQp~El~ 2197 (2346)
+|+|+..|+. ..++||+|+|+...+ +.||.|+..+||..+...+.... ..+.+....|++++||+||+|...+
T Consensus 1 ~k~il~~a~~~~~~ev~G~L~G~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVGwyhshp~~~~ 77 (116)
T cd07767 1 LKMFLDAAKSINGKEVIGLLYGSKTKK---VLDVDEVIAVPFDEGDKDDNVWFLMYLDFKKLNAGLRIVGWYHTHPKPSC 77 (116)
T ss_pred CHhHHHHHhcCCCcEEEEEeEEEEcCC---EEEEEEEEecccCCCCCccHHHHHHHHHHHHhcCCCeEEEEEEcCCCCCC
Confidence 3788888888 788999999986433 88999999999988766543221 1222333389999999999999999
Q ss_pred CCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCC
Q 042625 2198 QLSPQDLTSHARILENNKQWDGEKCIILTCSFTPG 2232 (2346)
Q Consensus 2198 ~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPG 2232 (2346)
++|+.|+.+|.+++... + +++.++|++.++
T Consensus 78 ~~s~~dv~~~~~~q~~~----~-~~v~li~~~~~~ 107 (116)
T cd07767 78 FLSPNDLATHELFQRYF----P-EKVMIIVDVKPK 107 (116)
T ss_pred ccCHHHHHHHHHHHHhC----C-CCEEEEEECCCc
Confidence 99999999999998742 3 379999999997
No 15
>smart00232 JAB_MPN JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.
Probab=98.87 E-value=1.1e-09 Score=111.29 Aligned_cols=120 Identities=33% Similarity=0.440 Sum_probs=81.7
Q ss_pred echhHHHHHHHhccccceEEEEEeccCCCCCCCceeEEEEEcCCccccccee-eCCCCCCCccc-------ccCCCcceE
Q 042625 2117 MPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQV-HLPSALPEHDF-------LNDLEPLGW 2188 (2346)
Q Consensus 2117 LPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tV-elp~~lP~hd~-------LeDLE~LGW 2188 (2346)
++.+++++.. ++...++||+|+|....++..|+++-++ |+..+..++ .++. -|.+.. ..+++++||
T Consensus 8 v~~~i~~h~~--~~~p~e~~G~L~G~~~~~~~~i~~~~~~---p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vGw 81 (135)
T smart00232 8 VPLNILKHAI--RDGPEEVCGVLLGKSNKDRPEVKEVFAV---PNEPQDDSVQEYDE-DYSHLMDEELKKVNKDLEIVGW 81 (135)
T ss_pred HHHHHHHHHh--cCCCcEEEEEEEEEEcCCEEEEEEEEec---CcCCCCcchhhhhh-hHHHHHHHHHHhhCCCceEEEE
Confidence 3566666665 5788999999999977666666554444 444444443 2322 233332 278999999
Q ss_pred EeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecCcc
Q 042625 2189 MHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPS 2244 (2346)
Q Consensus 2189 IHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT~e 2244 (2346)
.||||...+++|..|+.+|+.+...+..+.. ..+..+.+++ |++++.||+++++
T Consensus 82 yhshp~~~~~pS~~D~~~~~~~~~~~~~~~~-~~v~~~~s~~-g~~~~~af~~~~~ 135 (135)
T smart00232 82 YHSHPDESPFPSEVDVATHESYQAPWPISVV-LIVDPIKSFQ-GRLSLRAFRLTPE 135 (135)
T ss_pred EEcCCCCCCCcCHHHHHHHHHHHhcCCceEE-EEECCCcccc-CcEEEEEEEecCC
Confidence 9999999999999999999998887543222 1122233343 9999999999863
No 16
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=98.34 E-value=2.1e-06 Score=100.15 Aligned_cols=126 Identities=18% Similarity=0.229 Sum_probs=97.7
Q ss_pred cEEEechhHHHHHHHhc--cccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcc-----cc----c
Q 042625 2113 YTYIMPKNILKKFICIA--DLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHD-----FL----N 2181 (2346)
Q Consensus 2113 ~tyVLPKNLLKKFI~IS--DlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd-----~L----e 2181 (2346)
..+.|+..++.+.+.-| .....|||+|.|.. + ....||.-+.-+|+.|+...|+.-. -+... .+ .
T Consensus 10 ~~V~Is~~allkil~Ha~~~~p~Ev~GlLlG~~--~-~~~v~Vt~~fp~p~~~t~~~v~~~~-e~~~~m~~~~~~~~~~~ 85 (268)
T cd08069 10 EKVYISSLALLKMLKHARAGGPIEVMGLMLGKV--D-DYTIIVVDVFALPVEGTETRVNAQD-EFQEYMVQYEMLKQTGR 85 (268)
T ss_pred cEEEECHHHHHHHHHHHhccCCceEEEEEEeee--c-CCeEEEEEEEECCcCCCCCceeccH-HHHHHHHHHHHHHHhCC
Confidence 45779999999999655 44567999999973 2 2344676666678999988887743 22222 11 5
Q ss_pred CCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEee----cCCeeEEEEEecCcchhc
Q 042625 2182 DLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSF----TPGSCSLTAYKLTPSGYE 2247 (2346)
Q Consensus 2182 DLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcsf----tPGS~SLsAy~LT~eG~e 2247 (2346)
+++++||.|+||.-.|++|..|+.||..++..++ .+|.|+|.+ +.|.+++.||++++.|+.
T Consensus 86 ~~~vVGWYHSHP~~g~~~S~~Dv~tq~~yq~~~~-----~~V~lViDP~~t~~~g~~~i~Afr~~~~~~~ 150 (268)
T cd08069 86 PENVVGWYHSHPGYGCWLSGIDVNTQQLNQQLQD-----PFVAVVVDPIRSLVKGKVVIGAFRTIPPGYK 150 (268)
T ss_pred CceeEeeeccCCCcCCcCCHHHHHHHHHHHhcCC-----CcEEEEEeCCccccCCcceeeEEEEECcccc
Confidence 6899999999999999999999999999988642 368999883 578899999999999974
No 17
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain. Npl4p (nuclear protein localization-4) is identical to Hmg-CoA reductase degradation 4 (HRD4) protein and contains a domain that is part of the pfam clan MPN/Mov34-like. Npl4 plays an intermediate role between endoplasmic reticulum-associated degradation (ERAD) substrate ubiquitylation and proteasomal degradation. Npl4p associates with Cdc48p (Cdc48 in yeast and p97 or valosin-containing protein (VCP) in higher eukaryotes), the highly conserved ATPase of the AAA family, via ubiquitin fusion degradation-1 protein (Ufd1p) to form a Cdc48p-Ufd1p-Npl4p complex which then functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=98.29 E-value=2.2e-06 Score=100.42 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=98.3
Q ss_pred EEechhHHHHHHHhcc--ccceEEEEEeccCCCCCC----CceeEEEEEcCCcccccceeeCCCCCCCcc---cc---cC
Q 042625 2115 YIMPKNILKKFICIAD--LRTQISGYLYGISPPDNP----QVKEIRCIAMPPQWGTHQQVHLPSALPEHD---FL---ND 2182 (2346)
Q Consensus 2115 yVLPKNLLKKFI~ISD--lRTQIaGyLYG~SP~DNp----~VKEIrcIVIvPQlGt~~tVelp~~lP~hd---~L---eD 2182 (2346)
.+--..+...|+.+.- ...|=+|||||.-..+.. ---.|-||--|||.|+.+++++-. -+..+ -+ =+
T Consensus 14 ef~~~~~~~~f~~~~w~~~~~QR~G~LyG~y~~~~~~plgika~VeaIYEPPQ~~~~d~~~~l~-d~~~~~vd~iA~~lG 92 (274)
T cd08061 14 EFDNPSIVEFFLYVFWRKTGQQRIGFLYGRYDEDEDVPLGIKAVVEAIYEPPQEGTPDGFELLE-DPNADTVDAIAAALG 92 (274)
T ss_pred EEecHHHHHHHHHHHHHhhcceeEEEEEEEeecccCCCCceEEEEEEEECCCccCCCCCeEEcc-chhhhHHHHHHHHcC
Confidence 3444556666666422 236789999998654431 122489999999999999999853 23322 11 58
Q ss_pred CCcceEEeeCCCC----CCCCCHHhHHHHHHHHhhcCC-CCCCcEEEEEEeec-CCeeEEEEEecCcchhcccccc
Q 042625 2183 LEPLGWMHTQPNE----LPQLSPQDLTSHARILENNKQ-WDGEKCIILTCSFT-PGSCSLTAYKLTPSGYEWGRVN 2252 (2346)
Q Consensus 2183 LE~LGWIHTQp~E----l~~LSp~Dv~THAkl~~~n~~-wd~~~sI~Itcsft-PGS~SLsAy~LT~eG~eWG~~N 2252 (2346)
|+.+|||+|++.+ ..+||+.++.+.|+++++|+. --+.++|+++++.. -|.+++.||-+++.|.+=-+.+
T Consensus 93 L~~VG~IfT~l~~~~~d~~~LSs~Evi~aA~~Q~~~~~g~~gskFvT~vvs~~~~g~i~~~ayQvSdq~~~lv~~~ 168 (274)
T cd08061 93 LERVGWIFTDLPREDKDGYFLSAEEVILAAKFQLKHPTGKFGSKFVTVVVTGDKDGQIHFEAYQVSDQAMALVRDG 168 (274)
T ss_pred CeEEEEEEecCCCCCCCceeECHHHHHHHHHHhhhcccCCcCCeEEEEEEecCCCCceeeeeeeecHHHHHHHHcC
Confidence 9999999999977 789999999999999986422 12446777777754 4679999999999988655543
No 18
>KOG1795 consensus U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.15 E-value=7.3e-07 Score=114.81 Aligned_cols=118 Identities=14% Similarity=-0.063 Sum_probs=107.6
Q ss_pred ccccccCCChHHHHhhhcccCCCCccccccccccccccccccHHHHHHHhhcCCCCccccceeeEEEeeeceEEeecccc
Q 042625 73 VEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIP 152 (2346)
Q Consensus 73 ~~~~k~~mppehlrkii~~~~dms~~~~~~dkr~~lgaLky~PhAi~klLenmPmPWE~vr~V~VLYHitGAITFVnEiP 152 (2346)
.+..+.+|||||.+.+.+-.-||. .++.| .+|+||+..|++-+|||||+..|.+.+|||..|-++|+-+.-
T Consensus 183 le~i~~~ld~e~d~~v~~w~yd~~--------pl~~~-~~vng~tyr~w~~slP~m~~l~Rl~~~l~~d~~d~ny~ylfd 253 (2321)
T KOG1795|consen 183 LEAIQLELDPEEDRAVVDWFYDHK--------PLVDT-KRVNGPTYRKWNLSLPMMSTLYRLANQLLSDLVDDNYFYLFD 253 (2321)
T ss_pred cchhccCCChHHhhHHHHHHhhcC--------chhhc-cccCcHHHHhHhhcCccHHHHHHHHHHHHHHhcccceEEEec
Confidence 345678999999999998777776 89999 999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhHhhhccccccccccCCCCCCCCCCCccc
Q 042625 153 WVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD 199 (2346)
Q Consensus 153 rViEpvy~AQW~tmWi~MRrEKrdRrhFKRmrfPpFDDeEPpldy~d 199 (2346)
+-.-..+.|.|..+=---+-|.--|++.+--++|.|||..|.++++-
T Consensus 254 ~~sff~~Kaln~aipggpkfEpl~~~~~~~ed~neFndi~kvi~r~p 300 (2321)
T KOG1795|consen 254 MKSFFTAKALNMAIPGGPKFEPLYRDLERGEDWNEFNDINKVIIRGP 300 (2321)
T ss_pred chhhhhHHHHhccCCCCCCcccccccccccccccccccccceeEecc
Confidence 98888899998887777788888888888899999999999999974
No 19
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.
Probab=98.11 E-value=2.5e-06 Score=86.54 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=78.5
Q ss_pred ccEEEechhHHHHHHHhcccc--ceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCC---cccc----cC
Q 042625 2112 GYTYIMPKNILKKFICIADLR--TQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPE---HDFL----ND 2182 (2346)
Q Consensus 2112 ~~tyVLPKNLLKKFI~ISDlR--TQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~---hd~L----eD 2182 (2346)
..++.|...++-+++..+.-+ ..|+|+|+|....++ +.||.....+|+.++...+........ .+.+ .+
T Consensus 3 ~~~V~i~p~vll~i~~h~~r~~~~~v~G~LlG~~~~~~--~v~I~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF01398_consen 3 VQTVQIHPLVLLKIIDHATRSSPNEVIGLLLGTQDGDN--TVEITNSFPVPHSESEDDCDMDDEDFQKKMIELLKKVNPN 80 (114)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHHCTEEEEEEEEEEETT---EEEEEEEEEESEEEESSEEEEECCHHHHHHHHHHHHCSTT
T ss_pred cEEEEECHHHHHHHHHHHhcCCCCEEEEEEEEEecCce--EEEEEEEEEeeEecCccccccchhhHHHHHHhhhcccccc
Confidence 457888999999999887553 458999999864443 779999999999999999777543222 0111 45
Q ss_pred CCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcC
Q 042625 2183 LEPLGWMHTQPNELPQLSPQDLTSHARILENNK 2215 (2346)
Q Consensus 2183 LE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~ 2215 (2346)
++++||.||+|+-.+++|+.|+.+|+.++..++
T Consensus 81 ~~iVGWY~s~p~~~~~~S~~di~~q~~~q~~~~ 113 (114)
T PF01398_consen 81 LEIVGWYHSHPNISCFPSPTDIETQKQYQRMNP 113 (114)
T ss_dssp SEEEEEEEEESSS-SS--HHHHHHHHHHHHHTT
T ss_pred ceEEEEEEccCCccccCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999875
No 20
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=97.99 E-value=2.9e-05 Score=86.91 Aligned_cols=127 Identities=21% Similarity=0.266 Sum_probs=91.9
Q ss_pred cEEEechhHHHHHHHhc-cccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcc-----cc--cCCC
Q 042625 2113 YTYIMPKNILKKFICIA-DLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHD-----FL--NDLE 2184 (2346)
Q Consensus 2113 ~tyVLPKNLLKKFI~IS-DlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd-----~L--eDLE 2184 (2346)
++.-|..+.+-|-+.=| +....+||+|.|.- ..+..+.+|..+.-+|+.++...+++- |... .+ .+++
T Consensus 5 f~V~Is~~all~m~~Ha~~~~~EvcGlL~G~~-d~~~~~l~Vt~~~p~~~~~~~~~~e~d---p~~q~e~~~~l~~~gl~ 80 (187)
T cd08067 5 FKVTVSSNALLLMDFHCHLTTSEVIGYLGGTW-DPNTQNLTILQAFPCRSRLTGLDCEMD---PVSETEIRESLESRGLS 80 (187)
T ss_pred EEEEECHHHHHHHHHHhcCCCcEEEEEEEeEE-cCCCCeEEEEEEEecCCCCCCcccccC---HHHHHHHHHHHHHcCCE
Confidence 44556666666655433 33367999999973 233445588888888998887777763 3221 23 7899
Q ss_pred cceEEeeCCCCCCCCCHHhHHHHHHHHhhcC----CCCCCcEEEEEEeecC-----CeeEEEEEecCcch
Q 042625 2185 PLGWMHTQPNELPQLSPQDLTSHARILENNK----QWDGEKCIILTCSFTP-----GSCSLTAYKLTPSG 2245 (2346)
Q Consensus 2185 ~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~----~wd~~~sI~ItcsftP-----GS~SLsAy~LT~eG 2245 (2346)
++||.|+||...+.+|..|+.|++.++...+ ++++ +|.|+|++.- ...++++|...++.
T Consensus 81 vVGwYHSHP~~~~~pS~~Di~tQ~~yQ~~~~~~~~~~~p--~v~~I~~P~~~~~~~~~s~i~~f~~~~~~ 148 (187)
T cd08067 81 VVGWYHSHPTFPPNPSLRDIDTQLDYQIMFKGSDSGYEP--CVGLICSPYDRRNSTPESQITCFWVMPPP 148 (187)
T ss_pred EEEEEecCCCCCcCCCHHHHHHHHHHHhhccccccCCCC--eEEEEEccccCCCCCCCCcEEEEEEECCC
Confidence 9999999999999999999999999998765 3555 8999999432 12478888886543
No 21
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport. Using a diverse set of substrates and direct ubiquitination assays, analysis revealed that HRD4/NPL4 is required for a poorly characterised step in ER-associated degradation following ubiquitination of target proteins but preceding their recognition by the 26S proteasome []. Npl4p physically associates with Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 complex functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation or even more specific processing [].
Probab=97.80 E-value=5.8e-05 Score=90.01 Aligned_cols=115 Identities=22% Similarity=0.326 Sum_probs=86.8
Q ss_pred EEEEeccCCCCCC-----CceeEEEEEcCCcccccceeeCCCCCCCcc---cc---cCCCcceEEeeCCC----------
Q 042625 2136 SGYLYGISPPDNP-----QVKEIRCIAMPPQWGTHQQVHLPSALPEHD---FL---NDLEPLGWMHTQPN---------- 2194 (2346)
Q Consensus 2136 aGyLYG~SP~DNp-----~VKEIrcIVIvPQlGt~~tVelp~~lP~hd---~L---eDLE~LGWIHTQp~---------- 2194 (2346)
+|||||.=.++.. .+ .|-+|--|||.|+.+++++ ..-|+-+ .+ =+|+.+|||-|+..
T Consensus 2 ~G~LYG~Y~~~~~vplGika-~VeaIYEPpQ~~~~d~~~l-~~d~~~~~vd~iA~~lGL~rVG~IfTdl~~~~~~~g~v~ 79 (306)
T PF05021_consen 2 FGFLYGRYEEYDDVPLGIKA-VVEAIYEPPQEGEPDGFTL-LPDENEERVDAIASALGLERVGWIFTDLTDDGSGDGTVK 79 (306)
T ss_pred eEEEEEEEeccCCCCCceEE-EEEEEECCCcCCCCCCEEE-cCCccHHHHHHHHHHCCCEEEEEEEecCcccccCCCcee
Confidence 6999998444331 22 4788999999999999999 4344332 22 48999999999998
Q ss_pred -----CCCCCCHHhHHHHHHHHhhcCC---C-----CCCcEEEEEEee-cCCeeEEEEEecCcchhcccccc
Q 042625 2195 -----ELPQLSPQDLTSHARILENNKQ---W-----DGEKCIILTCSF-TPGSCSLTAYKLTPSGYEWGRVN 2252 (2346)
Q Consensus 2195 -----El~~LSp~Dv~THAkl~~~n~~---w-----d~~~sI~Itcsf-tPGS~SLsAy~LT~eG~eWG~~N 2252 (2346)
+..+||+.++.+-|++++++|+ | -+.++|+++++- ..|.+.+.||-++..+.+=-+.+
T Consensus 80 ~~r~~~~~~LSs~Eii~aA~~Q~~~p~~~~~s~~g~fgSkFVT~vvsg~~~g~i~~~ayQvS~q~~~Lv~~~ 151 (306)
T PF05021_consen 80 CKRHKDSYFLSSLEIIFAAKLQNKHPNPCKYSETGYFGSKFVTCVVSGDEEGEIHFEAYQVSNQCVALVRAG 151 (306)
T ss_pred eccccccccccHHHHHHHHHHHHhcCccccccCCCccCCeEEEEEEeCCCCCceeeEEeeehHHHHHHHHCC
Confidence 8889999999999999999854 2 233566666653 44679999999998887655543
No 22
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=97.78 E-value=2.8e-05 Score=80.32 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=71.4
Q ss_pred cccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcc--cccCCCcceEEeeCCCCCCCCCHHhHHHH
Q 042625 2130 DLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHD--FLNDLEPLGWMHTQPNELPQLSPQDLTSH 2207 (2346)
Q Consensus 2130 DlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd--~LeDLE~LGWIHTQp~El~~LSp~Dv~TH 2207 (2346)
+.-..+||+|.|..- ++ ...++++-++++.-...+..-..++-... .-.+++++||-|+||.-.+++|+.|+.+|
T Consensus 13 ~~p~E~cGlL~G~~~-~~--~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~g~~~vG~YHSHP~~~~~pS~~Di~~~ 89 (119)
T cd08058 13 NTGIEVMGLLCGELT-HN--EFTDKHVIVPKQSAGPDSCTGENVEELFNVQTGRPLLVVGWYHSHPTFTAWLSSVDIHTQ 89 (119)
T ss_pred CCCeEEEEEeeeEEe-cC--ccceeEEEEeecCCCCCCchhHHHHHHHHHHhCCCCeEEEEEecCCCCCCccCHHHHHHH
Confidence 445669999999742 22 12345566665554443221100000000 11889999999999999999999999999
Q ss_pred HHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecC
Q 042625 2208 ARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLT 2242 (2346)
Q Consensus 2208 Akl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT 2242 (2346)
+.+++.. + +.+.++|+..--..++.||+||
T Consensus 90 ~~~q~~~----p-~~~~lI~s~~~~~~~~~a~rl~ 119 (119)
T cd08058 90 ASYQLML----P-EAIAIVVSPKHRNKDTGIFRLT 119 (119)
T ss_pred HHHhccC----C-CeEEEEECcCCCCcccceEEeC
Confidence 9888753 2 4799999986657899999996
No 23
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=97.10 E-value=0.0023 Score=74.82 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=80.1
Q ss_pred EEechhHHHHHHHhc--cccceEEEEEeccCCC-----CCCCceeEEEEEcCC-cccccceeeCCCCCC-C----c-ccc
Q 042625 2115 YIMPKNILKKFICIA--DLRTQISGYLYGISPP-----DNPQVKEIRCIAMPP-QWGTHQQVHLPSALP-E----H-DFL 2180 (2346)
Q Consensus 2115 yVLPKNLLKKFI~IS--DlRTQIaGyLYG~SP~-----DNp~VKEIrcIVIvP-QlGt~~tVelp~~lP-~----h-d~L 2180 (2346)
..|+.+++.+-+.=| +---.+||+|-|..-. +...| +|..++..+ +-.+.+.+++..+.- . - +++
T Consensus 4 V~Is~~~l~~il~HA~~~~P~EvCGLL~G~~~~~~~~~~~~~v-~i~~~~~~~~~~~s~~r~eidPee~~~a~~ea~~~~ 82 (244)
T cd08068 4 VHLSADVYLVCLTHALSTEKEEVMGLLIGEIEVSKKGEEVAIV-HISAVIILRRSDKRKDRVEISPEQLSAASTEAERLT 82 (244)
T ss_pred EEECHHHHHHHHHHHHhCCCcceeEEEEeecccccccccceeE-EEeeeccccccCCCCceEEeCHHHHHHHHHHHHHHH
Confidence 568888888877543 3445699999996321 12222 332322222 334556667642100 0 0 001
Q ss_pred ----cCCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeec-C------CeeEEEEEecCcc
Q 042625 2181 ----NDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFT-P------GSCSLTAYKLTPS 2244 (2346)
Q Consensus 2181 ----eDLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcsft-P------GS~SLsAy~LT~e 2244 (2346)
.+++++||.|+||.-.+..|..|+.|+..++... + ..+.+.||.- + |.+.+.||++.+.
T Consensus 83 ~~~~rgl~vVGwYHSHP~~~a~PS~~Dv~tq~~~q~~~----p-~~v~lIvS~~~~~~~~~~~~~~i~aFr~~~g 152 (244)
T cd08068 83 EETGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMD----S-GFVGLIFSCFNEDKSTKMGEVQVTCFQSVQG 152 (244)
T ss_pred hhccCCceEEEEEecCCCCCCCCCHhHHHHHHHHHhhC----C-CcEEEEEEecCCccccccCCEEEEEEEecCC
Confidence 6799999999999999999999999988887543 3 3677777743 2 5799999999643
No 24
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=96.92 E-value=0.041 Score=67.30 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=90.6
Q ss_pred eEEEEeehhHHHHHhhcHHHHHHHHHH-HhcchhhhhhhhcCceEEEee-c----cccccccccccccchhHHHHHHHHH
Q 042625 983 CVVMLQTKFEKFFEKIDLTMLNRLLRL-VLDHNIADYVTAKNNVVLSYK-D----MSHTNSYGLIRGLQFASFVVQYYGL 1056 (2346)
Q Consensus 983 ~~vl~et~l~~~~ekiD~tlLnrLLrl-i~D~nladYitsKnNv~i~yK-D----M~~~N~~GlirGlqFssFv~q~y~l 1056 (2346)
....+++.+.++|..||...|-+.|+- ++|...-+||-.=--+-+.+. | -..+..-|.=.|=.+|.++-..|..
T Consensus 21 ~~~vvd~Dik~fFdsIpH~~Lm~vL~~~~~~~~wL~li~r~L~APl~~~~dg~~~~~r~r~rGtPqGgviSplLaNiyL~ 100 (346)
T cd01709 21 EVTVVQSDFKWFGPSLPHSTILAVLKFFGVPEKWLDFFKKFLEAPLRFVADGPDAPPRIRKRGTPMSHALSDVFGELVLF 100 (346)
T ss_pred CEEEEEeehHhhCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhCceeecCCCCcccccccCCccCCCchhhHHHHHHHHH
Confidence 345679999999999999999999988 999888899888776777663 3 2356778999999999999999999
Q ss_pred HHHHHHhcccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEec-ChHHHHHHHHHhhhc
Q 042625 1057 VLDLLLLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRF-THEEARDLIQRYLTE 1126 (2346)
Q Consensus 1057 ilDLliLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf-~~~E~~~Li~~yL~e 1126 (2346)
.+|..+-.. .+--.|.||.|.+.+.-+- +.++|..-+++++++
T Consensus 101 ~lD~~v~~~---------------------------~~g~~l~RYaDD~vi~~~~~~a~~aw~~i~~fl~~ 144 (346)
T cd01709 101 CLDFAVNQA---------------------------TDGGLLYRLHDDLWFWGQPETCAKAWKAIQEFAKV 144 (346)
T ss_pred HHHHHHHhc---------------------------CCCceEEEEcCeEEEEcCHHHHHHHHHHHHHHHHH
Confidence 999987621 1235688999999888432 133455667777654
No 25
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.29 E-value=0.0027 Score=81.52 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=12.2
Q ss_pred ccccccccccccccHHHHHH
Q 042625 101 RHDKRVYLGALKFIPHAVYK 120 (2346)
Q Consensus 101 ~~dkr~~lgaLky~PhAi~k 120 (2346)
...=-+++|++| |||.=.|
T Consensus 701 aQnLsIflgS~r-mpyeeik 719 (1102)
T KOG1924|consen 701 AQNLSIFLGSFR-MPYEEIK 719 (1102)
T ss_pred HHHHHHHHhhcc-CCHHHHH
Confidence 334457888888 8875433
No 26
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=96.25 E-value=0.016 Score=68.17 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=84.6
Q ss_pred EEechhHHHHHHHhcc--ccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcc------cc--c--C
Q 042625 2115 YIMPKNILKKFICIAD--LRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHD------FL--N--D 2182 (2346)
Q Consensus 2115 yVLPKNLLKKFI~ISD--lRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd------~L--e--D 2182 (2346)
+.|..-++-+-+.-+- ....|||.|.|.. . ..+.||.-..-+|..++.+....- ..+... .+ - |
T Consensus 3 V~I~~~vllkIv~H~~~~~p~~v~G~LLG~~-~--~~~leVtn~Fp~P~~~~~~~~~~~-~~~~~yq~~m~~~~r~v~~~ 78 (266)
T cd08065 3 VQIDGLVVLKIIKHCKEELPELVQGQLLGLD-V--GGTLEVTNCFPFPKSEEDDSDRAD-EDIADYQLEMMRLLREVNVD 78 (266)
T ss_pred EEEeHHHHHHHHHHHhcCCCcEEEEEEeeeE-c--CCEEEEEeccCCCCCCCCCcchhh-hhHHHHHHHHHHHHHHhCCC
Confidence 3455555555554332 2455999999974 2 357788666667777665542111 122111 11 2 3
Q ss_pred CCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeec---CCeeEEEEEecCcchhcccc
Q 042625 2183 LEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFT---PGSCSLTAYKLTPSGYEWGR 2250 (2346)
Q Consensus 2183 LE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcsft---PGS~SLsAy~LT~eG~eWG~ 2250 (2346)
-+++||-||+| -.++.++.++.++......++ .+|.++++.. .|..++.||+|++.|.+=.+
T Consensus 79 e~iVGWY~S~p-~~~~~~~s~id~~~~~q~~~~-----~~v~Li~D~~~s~~g~l~lkAyrl~~~~~~~~~ 143 (266)
T cd08065 79 HNHVGWYQSTY-LGSFFTRDLIETQYNYQEAIE-----ESVVLVYDPSKTSQGSLSLKAYRLSEKFMELYK 143 (266)
T ss_pred CcEEEeEeecC-CCCcCCHHHHHHHHHHhccCC-----CCEEEEECCCcccccceeeEEEEEcHHHHHHhh
Confidence 39999999999 558899999999888876542 3688888865 68899999999999986433
No 27
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.97 E-value=0.0053 Score=79.05 Aligned_cols=7 Identities=43% Similarity=1.289 Sum_probs=2.7
Q ss_pred CCccccc
Q 042625 127 MPWEQVR 133 (2346)
Q Consensus 127 mPWE~vr 133 (2346)
||.|++|
T Consensus 713 mpyeeik 719 (1102)
T KOG1924|consen 713 MPYEEIK 719 (1102)
T ss_pred CCHHHHH
Confidence 3333333
No 28
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=95.88 E-value=0.02 Score=60.19 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=67.6
Q ss_pred hHHHHHHHhccc--cceEEEEEeccCCCCCCCceeEEEEEcCCcccccc--eeeCCCCCCCc-----ccc--cCCCcceE
Q 042625 2120 NILKKFICIADL--RTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQ--QVHLPSALPEH-----DFL--NDLEPLGW 2188 (2346)
Q Consensus 2120 NLLKKFI~ISDl--RTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~--tVelp~~lP~h-----d~L--eDLE~LGW 2188 (2346)
.++++++.-|.. -..+||+|.|+...+...| .-++-+|...... ..++- |.. ... .+++++||
T Consensus 2 ~~~~~il~ha~~~~P~E~cGlL~G~~~~~~~~i---~~~~p~~n~~~~~~~~f~~d---~~~~~~~~~~~~~~g~~~vG~ 75 (128)
T cd08070 2 ELLEAILAHAEAEYPEECCGLLLGKGGGVTAIV---TEVYPVRNVAESPRRRFEID---PAEQLAAQREARERGLEVVGI 75 (128)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeecCCCCceE---EEEEEccCCCCCCCceEEEC---HHHHHHHHHHHHHCCCeEEEE
Confidence 456666666654 4569999999865555433 3344455444433 33322 221 111 57899999
Q ss_pred EeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecCc
Q 042625 2189 MHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTP 2243 (2346)
Q Consensus 2189 IHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT~ 2243 (2346)
.||||+..+..|..|+.++... + .+.+.|+...+-..+.||.+..
T Consensus 76 ~HSHP~~~~~PS~~D~~~~~~~--------~--~~~lIv~~~~~~~~~~~~~~~~ 120 (128)
T cd08070 76 YHSHPDGPARPSETDLRLAWPP--------G--VSYLIVSLAGGAPELRAWRLEG 120 (128)
T ss_pred EeCCCCCCCCCCHHHHHhccCC--------C--CeEEEEECCCCCcEEEEEEEcC
Confidence 9999999999999998765321 2 2455555444345788999864
No 29
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=95.65 E-value=0.17 Score=55.99 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=112.6
Q ss_pred ceeeeeecccchhhHHHHHHHHhhhhcccCCCCCC---CCCCCCCCCChhHHHhhhcccccccCcccCCCCeeEEEEeeh
Q 042625 914 YLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPN---WIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTK 990 (2346)
Q Consensus 914 ~l~PvY~v~plEKitDayLdqYLwYEadkr~LFP~---wiKPsD~E~pPllvyKwcqgInnl~~~w~~s~ge~~vl~et~ 990 (2346)
..-|+.....++|+....+.+.|=...+.. |+. -..|..+ ..-..+..+ . ...++...++...
T Consensus 11 ~~RpI~~~~~~~ki~~~~i~~~L~~~~~~~--~~~~~~g~~~~rs---~~~~i~~i~------~---~~~~~~~~~~~~D 76 (226)
T cd01651 11 KKRPLGIPTVRDRIVQEALKLVLEPIYEPR--FSDCSYGFRPGRS---AHDALKAIR------R---NVKGGYTWVIEGD 76 (226)
T ss_pred CCCccCCCchHHHHHHHHHHHHHHHHHhhc--cccCCCCCCCCCC---HHHHHHHHH------H---HhcCCCeEEEEcc
Confidence 456777778889999998888775555432 111 1222221 011111111 1 1233445678899
Q ss_pred hHHHHHhhcHHHHHHHHH-HHhcchhhhhhhhcCceEEEeeccccccccccccccchhHHHHHHHHHHHHHHHhcccccc
Q 042625 991 FEKFFEKIDLTMLNRLLR-LVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRAS 1069 (2346)
Q Consensus 991 l~~~~ekiD~tlLnrLLr-li~D~nladYitsKnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDLliLG~~ra~ 1069 (2346)
+.+.|..|+...|-+.|+ ...|+.+.+++.+--........-...-..|+-.|.-.|++++.+|.--+|-.+.....-.
T Consensus 77 i~~~Fdsi~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~GlpqG~~lSp~L~~~~l~~ld~~l~~~~~~~ 156 (226)
T cd01651 77 IKGFFDNIDHDLLLKILKRRIGDKRVLRLIRKWLKAGVLEDGKLVETEKGTPQGGVISPLLANIYLHELDKFVEEKLKEY 156 (226)
T ss_pred HHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHHHhceEccCCeEeCCCCCcCCCccHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999998876665 4566777777754211111111112234679999999999999999999998887543221
Q ss_pred cccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecCh--HHHHHHHHHhhhc
Q 042625 1070 EIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTH--EEARDLIQRYLTE 1126 (2346)
Q Consensus 1070 e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~~--~E~~~Li~~yL~e 1126 (2346)
+ ... ....+---|+||+|.++++..-.. +++.+.++.++.+
T Consensus 157 ~---------------~~~-~~~~~~~~~~rY~DD~~i~~~~~~~~~~~~~~i~~~~~~ 199 (226)
T cd01651 157 Y---------------DTS-DPKFRRLRYVRYADDFVIGVRGPKEAEEIKELIREFLEE 199 (226)
T ss_pred c---------------ccc-ccccCceEEEEecCceEEecCCHHHHHHHHHHHHHHHHH
Confidence 1 000 111223569999999999977654 4667777777764
No 30
>KOG2834 consensus Nuclear pore complex, rNpl4 component (sc Npl4) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.045 Score=68.14 Aligned_cols=127 Identities=21% Similarity=0.309 Sum_probs=94.6
Q ss_pred chhHHHHHHHhcc-ccceEEEEEeccCCCCCCCc-----eeEEEEEcCCcccccceeeCCCCCCCcccc------cCCCc
Q 042625 2118 PKNILKKFICIAD-LRTQISGYLYGISPPDNPQV-----KEIRCIAMPPQWGTHQQVHLPSALPEHDFL------NDLEP 2185 (2346)
Q Consensus 2118 PKNLLKKFI~ISD-lRTQIaGyLYG~SP~DNp~V-----KEIrcIVIvPQlGt~~tVelp~~lP~hd~L------eDLE~ 2185 (2346)
-.++...||.-.- .-.|=+|||||. =.++.+| -||-+|-=|||.|..+.++|- ..++..-. =+|.-
T Consensus 181 ~~~~v~~Fl~~wr~sg~QR~GflyG~-y~e~~~vPLGika~V~aIYEPPQ~~~~dgl~l~-~~~e~~~vD~~a~~lGLrR 258 (510)
T KOG2834|consen 181 NAELVNHFLNEWRASGVQRFGFLYGR-YTEHGNVPLGIKAVVAAIYEPPQHGEEDGLELL-EDDEAKRVDAIAEGLGLRR 258 (510)
T ss_pred chHHHHHHHHHHHHhhhhhcceEEEe-ecccccccccceeeEEEEecCCccCCcCCeEEe-ccchhhhHHHHHHhcCcee
Confidence 4567777775432 235778999997 4566666 478899999999999999996 33332211 57889
Q ss_pred ceEEeeCCC---------------CCCCCCHHhHHHHHHHHhhcCCC---C-----CCcEEEEEEee-cCCeeEEEEEec
Q 042625 2186 LGWMHTQPN---------------ELPQLSPQDLTSHARILENNKQW---D-----GEKCIILTCSF-TPGSCSLTAYKL 2241 (2346)
Q Consensus 2186 LGWIHTQp~---------------El~~LSp~Dv~THAkl~~~n~~w---d-----~~~sI~Itcsf-tPGS~SLsAy~L 2241 (2346)
+|||.|+-. +.-|||+.++.+-|+++.+||+| . +.+.|+++++= --|.|-+.+|-.
T Consensus 259 VG~IFTDl~~~~s~egtV~~~rhkdsyFLSseE~~~aa~~Q~~hpn~~~~s~~~~fgSkfVT~visg~~~~~V~f~~YQV 338 (510)
T KOG2834|consen 259 VGWIFTDLVTADSAEGTVHYKRHKDSYFLSSEECITAAMFQNKHPNICEWSRDGHFGSKFVTLVISGDLDGEVHFEGYQV 338 (510)
T ss_pred eEEEEeeeecccCccceEEeeeccchhcccHHHHHHHhhhhhcCCchheeeccccccceeEEEEEecCCCcceeeeeeeh
Confidence 999999753 45689999999999999999985 2 33578888873 346688999987
Q ss_pred Ccchh
Q 042625 2242 TPSGY 2246 (2346)
Q Consensus 2242 T~eG~ 2246 (2346)
+..+-
T Consensus 339 Snqc~ 343 (510)
T KOG2834|consen 339 SNQCM 343 (510)
T ss_pred hHHHH
Confidence 66554
No 31
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=94.96 E-value=0.095 Score=59.22 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=78.9
Q ss_pred EEEEeehhHHHHHhhcHHHHHHHHHHH-hc-chhhhhhhhcCceEEEeeccccccccccccccchhHHHHHHHHHHHHHH
Q 042625 984 VVMLQTKFEKFFEKIDLTMLNRLLRLV-LD-HNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLL 1061 (2346)
Q Consensus 984 ~vl~et~l~~~~ekiD~tlLnrLLrli-~D-~nladYitsKnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDLl 1061 (2346)
..++.+.+.++|+.|+...|.+.|+-. .| +.+++.|..-.. ...|+-.|...|++++.+|.--+|-.
T Consensus 57 ~~v~~~Di~~fFdsI~~~~L~~~l~~~~~~~~~~~~~l~~~~~-----------~~~GlpQG~~lSp~Lanl~l~~~d~~ 125 (214)
T cd03487 57 KYVLKLDIKDFFPSITFERVRGVFRSLGYFSPDVATILAKLCT-----------YNGHLPQGAPTSPALSNLVFRKLDER 125 (214)
T ss_pred CEEEEeehhhhcccCCHHHHHHHHHHcCCCCHHHHHHHHHHHh-----------CCCCcCCCCcccHHHHHHHHHHHHHH
Confidence 467899999999999999988766644 44 677776654221 12399999999999999999999988
Q ss_pred HhcccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecC----hHHHHHHHHHhhhc
Q 042625 1062 LLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFT----HEEARDLIQRYLTE 1126 (2346)
Q Consensus 1062 iLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~----~~E~~~Li~~yL~e 1126 (2346)
|..... .+-+ -|+||+|.+.|+..-. .+++...+++.|.+
T Consensus 126 l~~~~~------------------------~~~~-~~~RYaDD~~i~~~~~~~~~~~~~~~~i~~~l~~ 169 (214)
T cd03487 126 LSKLAK------------------------SNGL-TYTRYADDITFSSNKKLKEALDKLLEIIRSILSE 169 (214)
T ss_pred HHHHHH------------------------HcCC-eEEEEeccEEEEccccchhHHHHHHHHHHHHHHH
Confidence 764311 0112 3899999999987764 35677777777753
No 32
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic. This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import
Probab=93.60 E-value=0.39 Score=52.53 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=76.3
Q ss_pred hHHHHHHHhccccceEEEEEeccCCCCCCCceeE-EEEEcCCcccccceeeCCCCCCCcccc-----------cCCCcce
Q 042625 2120 NILKKFICIADLRTQISGYLYGISPPDNPQVKEI-RCIAMPPQWGTHQQVHLPSALPEHDFL-----------NDLEPLG 2187 (2346)
Q Consensus 2120 NLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEI-rcIVIvPQlGt~~tVelp~~lP~hd~L-----------eDLE~LG 2187 (2346)
|+++.+.....-...+.|.|.|... ...-|| .|+.+|. -++.....+ ..+|+ .+..++|
T Consensus 10 ~I~dh~~R~~~~~~~v~G~LlG~~~---~~~veV~nsF~lp~-~~~~~~~~~-----d~~y~~~m~~~~~~v~~~~~vVG 80 (157)
T cd08057 10 NISDHYTRRKYGIKRVIGVLLGYVD---GDKIEVTNSFELPF-DEEEESIFI-----DTEYLEKRYNLHKKVYPQEKIVG 80 (157)
T ss_pred hHHHHHHhccCCCCeEEEEEEeEEe---CCEEEEEEeEEccc-cCCCcchhh-----hHHHHHHHHHHHHHhCCCCCEEE
Confidence 5666666655434569999999753 334566 5666655 444443211 22232 6789999
Q ss_pred EEeeCCCCCCCCCHHhHHHHHHHHhh-cCCCCCCcEEEEEEee----cCCeeEEEEEecCcch
Q 042625 2188 WMHTQPNELPQLSPQDLTSHARILEN-NKQWDGEKCIILTCSF----TPGSCSLTAYKLTPSG 2245 (2346)
Q Consensus 2188 WIHTQp~El~~LSp~Dv~THAkl~~~-n~~wd~~~sI~Itcsf----tPGS~SLsAy~LT~eG 2245 (2346)
|-||++...+..+..|...|..+... + + +.|.+++.. +.|..++.||+++++.
T Consensus 81 WY~~~~~~~~~~~~~~~~i~~~~~~~~~----~-~~v~L~~D~~~~~~~~~l~i~ay~~~~~~ 138 (157)
T cd08057 81 WYSIGSNNSNEISKSDNSLHSQFSLISE----E-NPLILILDPSLQSDSEKLEISTFTSAQRE 138 (157)
T ss_pred EEeecCCCCCCCChhHHHHHHHHHhccC----C-CCEEEEEcCCcccCCCcccEEEEEEecCC
Confidence 99999887666788999999888764 2 1 357777775 4588999999998643
No 33
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=92.48 E-value=0.19 Score=54.33 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=75.0
Q ss_pred hhHHHHHhhcHHHHHHHH-HHHhcchhhhhh----hhcCceEEEeeccccccccccccccchhHHHHHHHHHHHHHHHhc
Q 042625 990 KFEKFFEKIDLTMLNRLL-RLVLDHNIADYV----TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLG 1064 (2346)
Q Consensus 990 ~l~~~~ekiD~tlLnrLL-rli~D~nladYi----tsKnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDLliLG 1064 (2346)
.+.++|..|+...|.+.| +.+.|+-...++ ....++. -+-.+....|+-.|...|+++.++|..=+|-.+-.
T Consensus 2 Di~~fF~sI~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~GlpqG~~lS~~L~~~~l~~~d~~i~~ 78 (158)
T cd01646 2 DISNFYDSIYTHSLPWALHGKIKAKQLLKLLRLLGNLLDLLL---LSSQYGQTNGLPIGPLTSRFLANIYLNDVDHELKS 78 (158)
T ss_pred chhhccCcchHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHH---HhccCCCCceEccCcchHHHHHHHHHHHHHHHHHh
Confidence 467899999988877555 455555554433 1111111 12345677899999999999999999999988874
Q ss_pred ccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecCh--HHHHHHHHHhhhc
Q 042625 1065 LTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTH--EEARDLIQRYLTE 1126 (2346)
Q Consensus 1065 ~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~~--~E~~~Li~~yL~e 1126 (2346)
. +.--.|+||+|.+.++.+-.. .++.+.++++|.+
T Consensus 79 ~---------------------------~~~~~~~RY~DD~~i~~~~~~~~~~~~~~i~~~l~~ 115 (158)
T cd01646 79 K---------------------------LKGVDYVRYVDDIRIFADSKEEAEEILEELKEFLAE 115 (158)
T ss_pred c---------------------------cCCceEEEecCcEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 3 223679999999999987533 2567777888766
No 34
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]
Probab=91.54 E-value=0.54 Score=50.15 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=64.8
Q ss_pred EEechhHHHHHHHhcccc--ceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc----cCCCcceE
Q 042625 2115 YIMPKNILKKFICIADLR--TQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL----NDLEPLGW 2188 (2346)
Q Consensus 2115 yVLPKNLLKKFI~ISDlR--TQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L----eDLE~LGW 2188 (2346)
.+|++++++.-+.-|.-. ..+||++.|+.-. .+..++..+-..- ......+.+.-. .++ .+++++||
T Consensus 2 ~~i~~~~l~~il~~a~~~~p~E~~g~l~~~~~~-----~~~~~~~n~~~~~-~~~~~~~~~~~~-~~~~~~~~g~~vvg~ 74 (134)
T COG1310 2 LVIPKEVLGAILEHARREHPREVCGLLAGTREG-----ERYFPLKNVSVEP-VEYFEIDPEYSL-FYLAAEDAGEVVVGW 74 (134)
T ss_pred ceecHHHHHHHHHHHHhcCChheEEEEEeeccc-----ceeeccccccCCc-ceeEeeCHHHHH-HHHHHhhCCCEEEEE
Confidence 468999999999988777 5699999997422 2222222222111 222222221100 112 45999999
Q ss_pred EeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEE
Q 042625 2189 MHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAY 2239 (2346)
Q Consensus 2189 IHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy 2239 (2346)
.|+||.-.+.+|..|+. ++.. |+. ...|+|.......++.++
T Consensus 75 yHSHP~~~~~pS~~D~~----~~~~---~~~--~~~iv~~~~~~~~~~~~~ 116 (134)
T COG1310 75 YHSHPGGPPYPSEADRR----LSKL---GPL--PWLIVSVPPGRVHKGRAV 116 (134)
T ss_pred EcCCCCCCCCcCHHHHh----hccc---cCC--CEEEEEcCCCceeEEeee
Confidence 99999999999999988 2221 333 345665544433344443
No 35
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.
Probab=91.02 E-value=0.87 Score=50.52 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=73.4
Q ss_pred CeeEEEEeehhHHHHHhhcHHHHHHHHHHHhcchhhhhhhhcCceEEEeeccccccccccccccchhHHHHHHHHHHHHH
Q 042625 981 GQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDL 1060 (2346)
Q Consensus 981 ge~~vl~et~l~~~~ekiD~tlLnrLLrli~D~nladYitsKnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~lilDL 1060 (2346)
+....++...+++.|+.|+...|-+.| |+-.|...|++++.+|.--+|-
T Consensus 79 ~~~~~~l~~Di~~aFdsi~~~~l~~~l-------------------------------GipQG~~lSp~l~~l~~~~l~~ 127 (220)
T cd01650 79 KKSLVLVFLDFEKAFDSVDHEFLLKAL-------------------------------GVRQGDPLSPLLFNLALDDLLR 127 (220)
T ss_pred CCceEEEEEEHHhhcCcCCHHHHHHHh-------------------------------CCccCCcccHHHHHHHHHHHHH
Confidence 567788999999999999998887777 9999999999999999988887
Q ss_pred HHhcccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecCh---HHHHHHHHHhhhcC
Q 042625 1061 LLLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTH---EEARDLIQRYLTEH 1127 (2346)
Q Consensus 1061 liLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~~---~E~~~Li~~yL~e~ 1127 (2346)
.+..... .....+--.|+||+|.+.|+..-.. ++..+.++.++.++
T Consensus 128 ~~~~~~~---------------------~~~~~~~~~~~~yaDD~~i~~~~~~~~~~~~~~~~~~~~~~~ 176 (220)
T cd01650 128 LLNKEEE---------------------IKLGGPGITHLAYADDIVLFSEGKSRKLQELLQRLQEWSKES 176 (220)
T ss_pred HHHhhcc---------------------ccCCCCccceEEeccceeeeccCCHHHHHHHHHHHHHHHHHc
Confidence 7653211 1122344679999999999988765 45556666666543
No 36
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=90.43 E-value=0.99 Score=53.54 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=76.0
Q ss_pred hHHHHHHHhccccceEEEEEeccCCCCCCCceeE-EEEEcCCcccccceeeCCCCCCCcccc-----------cCCCcce
Q 042625 2120 NILKKFICIADLRTQISGYLYGISPPDNPQVKEI-RCIAMPPQWGTHQQVHLPSALPEHDFL-----------NDLEPLG 2187 (2346)
Q Consensus 2120 NLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEI-rcIVIvPQlGt~~tVelp~~lP~hd~L-----------eDLE~LG 2187 (2346)
|+++.+.+.+.....|.|.|.|... ...-|| .|+.+ |.-.+.+.+.+- ++|+ .+..++|
T Consensus 10 ~I~dH~~R~~~~~~~V~G~LLG~~~---~~~veItnsF~~-p~~~~~~~~~~d-----~~y~~~m~~~~kkv~~~~~vVG 80 (265)
T cd08064 10 SILDSYERRNEGQERVIGTLLGTRS---EGEVEITNCFAV-PHNESEDQVAVD-----MEYHRTMYELHQKVNPKEVIVG 80 (265)
T ss_pred hHHHHHhhhcCCCcEEEEEEEEEEe---CCEEEEEeCeec-ceeCCCCeEEEc-----HHHHHHHHHHHHHhCCCCcEEe
Confidence 6777777766556789999999753 245677 45665 544444444432 1222 6789999
Q ss_pred EEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeec--CCeeEEEEEecCcchh
Q 042625 2188 WMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFT--PGSCSLTAYKLTPSGY 2246 (2346)
Q Consensus 2188 WIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcsft--PGS~SLsAy~LT~eG~ 2246 (2346)
|=||.+ .+++.|...|.-+...++. ...|.+++..+ .|..++.||.++++|.
T Consensus 81 WY~tg~----~~~~~~~~Ih~~~~~~~~~---~~pI~L~~D~~~~~~~l~i~ay~~~~~~~ 134 (265)
T cd08064 81 WYATGS----EITEHSALIHDYYSRECTS---YNPIHLTVDTSLDDGKMSIKAYVSSPLGV 134 (265)
T ss_pred eeeCCC----CCCccHHHHHHHHHhhCCC---CCCEEEEEeCCCCCCCcceEEEEEEeccc
Confidence 999976 5677888888888776432 13577777654 4458899999998874
No 37
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme. This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=88.17 E-value=3.5 Score=43.76 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=62.4
Q ss_pred echhHHHHHHHhccccc--eEEEEEeccCCCCCCCceeEEEEEcCC-cccccceeeCCCCCCCcccc-cCCCcceEEeeC
Q 042625 2117 MPKNILKKFICIADLRT--QISGYLYGISPPDNPQVKEIRCIAMPP-QWGTHQQVHLPSALPEHDFL-NDLEPLGWMHTQ 2192 (2346)
Q Consensus 2117 LPKNLLKKFI~ISDlRT--QIaGyLYG~SP~DNp~VKEIrcIVIvP-QlGt~~tVelp~~lP~hd~L-eDLE~LGWIHTQ 2192 (2346)
|++.++...+.-|.-.- .+||+|-|+.. . |..+..+| ...+...-.++. +.. .+++++|..|+|
T Consensus 1 i~~~~~~~i~~ha~~~~P~E~CGlL~G~~~----~---v~~~~~~~n~~~~~~~~~f~~-----~~~~~g~~ivgi~HSH 68 (117)
T cd08072 1 ISRDLLDSILEAAKSSHPNEFAALLRGKDG----V---ITELLILPGTESGEVSAVFPL-----LMLPLDMSIVGSVHSH 68 (117)
T ss_pred CCHHHHHHHHHHHhhcCCceEEEEEEeecc----E---EEEEEECCCCCCCCcceeech-----HHhcCCCeEEEEEEcC
Confidence 56777887777765432 59999999741 2 43444444 332222222221 122 789999999999
Q ss_pred CCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEe--ecCCeeEEEEEec
Q 042625 2193 PNELPQLSPQDLTSHARILENNKQWDGEKCIILTCS--FTPGSCSLTAYKL 2241 (2346)
Q Consensus 2193 p~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcs--ftPGS~SLsAy~L 2241 (2346)
|+.....|..|+. ++.. .+ .+-+.+| +.++ .+.||.+
T Consensus 69 P~~~~~PS~~D~~-~~~~-------~~--~~~lIvs~~~~~~--~~~a~~~ 107 (117)
T cd08072 69 PSGSPRPSDADLS-FFSK-------TG--LVHIIVGYPYDED--DWRAYDS 107 (117)
T ss_pred CCCCCCCCHHHHH-hhhc-------CC--CEEEEEECcCCCC--CEEEEec
Confidence 9999999999964 3321 22 2444445 4455 5669887
No 38
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=87.86 E-value=0.44 Score=59.74 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc
Q 042625 13 LAPPGTSGAVPIPPPPSQPSYTV 35 (2346)
Q Consensus 13 ~~pp~~~~~~p~~~~p~~~s~~~ 35 (2346)
-++.++++||||||||||++|..
T Consensus 228 ~~~s~~g~PPPPPP~PPp~~~~~ 250 (480)
T KOG2675|consen 228 KAASAPGAPPPPPPAPPPAPFFA 250 (480)
T ss_pred CcccCCCCCCCCCCCCCCccccc
Confidence 34445555555666666666655
No 39
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons. The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....
Probab=84.17 E-value=0.77 Score=49.86 Aligned_cols=119 Identities=24% Similarity=0.280 Sum_probs=81.9
Q ss_pred CCeeEEEEeehhHHHHHhhcHHHHHHHHHHH-hcchhhhhhhh----c-CceEEEeec-cccccccccccccchhHHHHH
Q 042625 980 DGQCVVMLQTKFEKFFEKIDLTMLNRLLRLV-LDHNIADYVTA----K-NNVVLSYKD-MSHTNSYGLIRGLQFASFVVQ 1052 (2346)
Q Consensus 980 ~ge~~vl~et~l~~~~ekiD~tlLnrLLrli-~D~nladYits----K-nNv~i~yKD-M~~~N~~GlirGlqFssFv~q 1052 (2346)
.++...++...+.+.|..|+...+-+.|..+ .|..+.+++.+ . .++.+ ..+ -.+.-..|+-.|...|++++.
T Consensus 60 ~~~~~~~~~~Di~~~f~sI~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~glpqG~~~S~~l~~ 138 (214)
T PF00078_consen 60 FKGYLYFLKLDISKAFDSIPHHRLLRKLKRFGVPKKLIRLIQNLLSDRTAKVYL-DGDLSPYFQKRGLPQGSPLSPLLFN 138 (214)
T ss_dssp -CGSSEEEEEECCCCGGGSBBHTTTGGGGEEEEECCSCHHHHHHHHHHHH-EEC-GCSSSEEEEESBS-TTSTCHHHHHH
T ss_pred cccccccceeccccccccceeeeccccccccccccccccccccccccccccccc-ccccccccccccccccccccchhhc
Confidence 3445789999999999999999888777654 44444444432 2 23333 333 566778899999999999999
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecChHHH---HHHHHHhhhc
Q 042625 1053 YYGLVLDLLLLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEA---RDLIQRYLTE 1126 (2346)
Q Consensus 1053 ~y~lilDLliLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~~~E~---~~Li~~yL~e 1126 (2346)
+|..-+|-.+.... .|--.|.||+|.+.|+.+- ++++ .+.+..++++
T Consensus 139 ~~l~~l~~~~~~~~--------------------------~~~~~~~rY~DD~~i~~~~-~~~~~~~~~~i~~~~~~ 188 (214)
T PF00078_consen 139 IYLDDLDRELQQEL--------------------------NPDISYLRYADDILIISKS-KEELQKILEKISQWLEE 188 (214)
T ss_dssp HHHHHHHHHHHHHS---------------------------TTSEEEEETTEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccc--------------------------cccccceEeccccEEEECC-HHHHHHHHHHHHHHHHH
Confidence 99998888776432 3335699999999999886 4444 4444455544
No 40
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6. CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav
Probab=81.61 E-value=6.4 Score=47.54 Aligned_cols=111 Identities=23% Similarity=0.330 Sum_probs=74.9
Q ss_pred hHHHHHHHhccc----cceEEEEEeccCCCCCCCceeE-EEEEcCCcccccceeeCCCCCCCcccc-----------cCC
Q 042625 2120 NILKKFICIADL----RTQISGYLYGISPPDNPQVKEI-RCIAMPPQWGTHQQVHLPSALPEHDFL-----------NDL 2183 (2346)
Q Consensus 2120 NLLKKFI~ISDl----RTQIaGyLYG~SP~DNp~VKEI-rcIVIvPQlGt~~tVelp~~lP~hd~L-----------eDL 2183 (2346)
||.+++.....- ..+|+|.|.|.. +...-|| .|+.+|.--.....+.+ .++|+ .++
T Consensus 12 ~I~dH~~R~~~~~~~~~~~v~G~LLG~~---~~~~veItnsF~~p~~~~~~~~~~i-----d~~y~~~m~~~~kkV~~~~ 83 (288)
T cd08063 12 NISDHITRHRAQSQSEPPRVVGALLGQQ---DGREIEIENSFELKYDTNEDGEIVL-----DKEFLETRLEQFKQVFKDL 83 (288)
T ss_pred eHHhhHhHHhccCCCCCCcEEEEEEEEE---cCCEEEEEEEEecccccCCCCceee-----CHHHHHHHHHHHHHhccCC
Confidence 677777776442 367999999974 3344577 67777764433122222 23333 678
Q ss_pred CcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEee----cCCeeEEEEEecCcchh
Q 042625 2184 EPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSF----TPGSCSLTAYKLTPSGY 2246 (2346)
Q Consensus 2184 E~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcsf----tPGS~SLsAy~LT~eG~ 2246 (2346)
.++||=+|.+.. +++.|...|..+...+ . +.|.+++.. +.|..++.||.-..+|-
T Consensus 84 ~vVGWY~tg~~~---~~~~~~~Ih~~~~~~~----~-~pv~L~~D~~~~~~~~~lpi~ay~s~~~~~ 142 (288)
T cd08063 84 DFVGWYTTGPGG---PTESDLPIHKQILEIN----E-SPVLLLLDPEANASGKDLPVTIYESVLELV 142 (288)
T ss_pred ceEEEEecCCCC---CCHHHHHHHHHHHhhC----C-CcEEEEEccccccCCCCCceeEEEEEEecc
Confidence 999999998772 5688999998888754 2 357777764 45678889998777664
No 41
>PRK09752 adhesin; Provisional
Probab=79.85 E-value=1.2 Score=61.53 Aligned_cols=9 Identities=44% Similarity=0.870 Sum_probs=5.1
Q ss_pred eeecccccc
Q 042625 346 RLGIYHTPM 354 (2346)
Q Consensus 346 ~~~~yh~p~ 354 (2346)
++.|+|.+.
T Consensus 1180 eaNW~Hn~~ 1188 (1250)
T PRK09752 1180 DLNYYHDPH 1188 (1250)
T ss_pred EEEEEEcCC
Confidence 333777654
No 42
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8. This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.
Probab=79.56 E-value=3.6 Score=49.70 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=71.7
Q ss_pred hHHHHHHHhc-cccceEEEEEeccCCCCCCCceeE-EEEEcCCcccccceeeCCCCCCCcccc-----------cCCCcc
Q 042625 2120 NILKKFICIA-DLRTQISGYLYGISPPDNPQVKEI-RCIAMPPQWGTHQQVHLPSALPEHDFL-----------NDLEPL 2186 (2346)
Q Consensus 2120 NLLKKFI~IS-DlRTQIaGyLYG~SP~DNp~VKEI-rcIVIvPQlGt~~tVelp~~lP~hd~L-----------eDLE~L 2186 (2346)
|+++.+.... +...+|.|-|.|... ...-|| .|+.+|. -.+.+.+..- .-.++|. .+..++
T Consensus 12 ~I~dh~~R~~~~~~~~ViG~LLG~~~---~~~veItnsF~~p~-~~~~~~~~~~--~~d~~y~~~m~~~~kkv~~~e~vV 85 (280)
T cd08062 12 SVVDHYNRVAKGTSKRVVGVLLGSWK---KGVLDVTNSFAVPF-EEDEKDPSVW--FLDHNYLENMYGMFKKVNAKEKIV 85 (280)
T ss_pred HHHHHHhhhcCCCCceEEEEEEEEEe---CCEEEEEEeeecCc-cCCCCCcchh--hhhHHHHHHHHHHHHHhCCCCCeE
Confidence 5666666654 335669999999853 245577 5666655 4443332100 0012322 678999
Q ss_pred eEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecC--CeeEEEEEecCcchh
Q 042625 2187 GWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTP--GSCSLTAYKLTPSGY 2246 (2346)
Q Consensus 2187 GWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftP--GS~SLsAy~LT~eG~ 2246 (2346)
||-||.|. +++.|+.+|.-+...++ +.|.+++-..+ +...+.||.-.++|.
T Consensus 86 GWY~tg~~----~~~~d~~ih~~~~~~~~-----~pv~l~vd~~~~~~~lpi~aY~s~~~~~ 138 (280)
T cd08062 86 GWYSTGPK----LRPNDLDINELFRRYCP-----NPVLVIIDVRPKDLGLPTEAYIAVEEVH 138 (280)
T ss_pred EEecCCCC----CCcchHHHHHHHHHhCC-----CCEEEEEecCCCCCCCceEEEEEeeecc
Confidence 99999875 67999999976666442 35777777554 456778998877775
No 43
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.39 E-value=2.3 Score=51.32 Aligned_cols=108 Identities=20% Similarity=0.342 Sum_probs=75.2
Q ss_pred ccccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc-----------cCCCcceEEeeCCCCCC
Q 042625 2129 ADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL-----------NDLEPLGWMHTQPNELP 2197 (2346)
Q Consensus 2129 SDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L-----------eDLE~LGWIHTQp~El~ 2197 (2346)
+.-+..|.|+|-|+...|+--| .-|+.+ |-.||--.|+-- .-..+|. .-...+||-|.||.=.|
T Consensus 71 ~GgnlEiMGlm~Gkv~g~t~Iv--mD~FaL-PVeGTETRVNAq--~~AyEYmv~Y~e~~k~~gr~envVGWyHSHPgYgC 145 (347)
T KOG1554|consen 71 SGGNLEIMGLMQGKVDGDTIIV--MDSFAL-PVEGTETRVNAQ--AEAYEYMVQYIEEAKNVGRLENVVGWYHSHPGYGC 145 (347)
T ss_pred cCCCeEEEeeecccccCCeEEE--Eecccc-ccccccceechH--HHHHHHHHHHHHHHHHhhhhhceeeeeecCCCCCc
Confidence 4567789999999865555333 344444 567777666532 2233332 23568999999999999
Q ss_pred CCCHHhHHHHHHHHhhcCCCCCCcEEEEEEe----ecCCeeEEEEEecCcchh
Q 042625 2198 QLSPQDLTSHARILENNKQWDGEKCIILTCS----FTPGSCSLTAYKLTPSGY 2246 (2346)
Q Consensus 2198 ~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcs----ftPGS~SLsAy~LT~eG~ 2246 (2346)
-||-.||.|+--=+. .=+| .++|++- ..-|.+.++|||-=|+||
T Consensus 146 WLSgIDVsTQ~lNQ~---fQeP--fvAvViDP~Rtlsagkv~iGAFRTyp~gy 193 (347)
T KOG1554|consen 146 WLSGIDVSTQMLNQR---FQEP--FVAVVIDPTRTLSAGKVNIGAFRTYPKGY 193 (347)
T ss_pred cccCcchhHHHHhhh---hcCC--eEEEEecCccccccCceeeceeecccCCC
Confidence 999999988532111 0125 7888886 456889999999999997
No 44
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A.
Probab=77.94 E-value=1 Score=45.33 Aligned_cols=80 Identities=24% Similarity=0.310 Sum_probs=42.3
Q ss_pred hHHHHHHHh--ccccceEEEEEeccCCCCCCCceeEEEEEcCCcc-cccceeeCCCCCCCcccccCCCcceEEeeCCCCC
Q 042625 2120 NILKKFICI--ADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQW-GTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNEL 2196 (2346)
Q Consensus 2120 NLLKKFI~I--SDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQl-Gt~~tVelp~~lP~hd~LeDLE~LGWIHTQp~El 2196 (2346)
+++..++.- +.....+||+|.|.. .+ + ..++++.+. ...+....... ...-.+++++|..||||+-.
T Consensus 3 ~~~~~i~~~~~~~~p~E~~G~L~g~~--~~-~----~~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~vg~~HSHP~~~ 72 (104)
T PF14464_consen 3 EVLEQIIAHARAAYPNEACGLLLGRR--DD-Q----RFIVVPNVNPDPRDSFRRERF---EARERGLEIVGIWHSHPSGP 72 (104)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEEEEE--EC-C----EEEEEEEEE--HHCHHHHHH----HHHHHT-EEEEEEEEESSSS
T ss_pred HHHHHHHHHHhhCCCCeEEEEEEEEe--cC-C----EEEEEeCCCCCcHHHHHHHhh---hhhcccceeeEEEEcCCCCC
Confidence 445555533 345567999999985 11 1 122222221 11111111100 11227899999999999999
Q ss_pred CCCCHHhHHHHHH
Q 042625 2197 PQLSPQDLTSHAR 2209 (2346)
Q Consensus 2197 ~~LSp~Dv~THAk 2209 (2346)
++.|..|......
T Consensus 73 a~pS~~D~~~~~~ 85 (104)
T PF14464_consen 73 AFPSSTDIRSMRD 85 (104)
T ss_dssp SS--HHHHHTHCC
T ss_pred CCCCHHHHHhhhc
Confidence 9999999765444
No 45
>PRK09752 adhesin; Provisional
Probab=76.65 E-value=1.6 Score=60.44 Aligned_cols=11 Identities=9% Similarity=0.320 Sum_probs=4.3
Q ss_pred ccccccccCCC
Q 042625 284 AKALNMCIPGG 294 (2346)
Q Consensus 284 aKalN~aIPgG 294 (2346)
++.+-.++.+|
T Consensus 1106 S~G~TASLEaG 1116 (1250)
T PRK09752 1106 SSGIIASLEAG 1116 (1250)
T ss_pred eeeEEEEEEcc
Confidence 33333444433
No 46
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=75.56 E-value=2.6 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=14.6
Q ss_pred cccccc--cccccCCCCccccccccccCCcCCccccc
Q 042625 281 FFTAKA--LNMCIPGGPKFEPLYRDMEKGDEDWNEFN 315 (2346)
Q Consensus 281 FfTaKa--lN~aIPgGPKFEpL~~~~~~~d~d~~efn 315 (2346)
..|||+ +|+.+|+| +|.||+||-
T Consensus 434 IvtsKSsemNi~vp~~------------~dgDy~Efp 458 (480)
T KOG2675|consen 434 IVTSKSSEMNINVPTN------------EDGDYVEFP 458 (480)
T ss_pred EEeecccceeEecccC------------CCCCccccc
Confidence 566664 47777632 567777763
No 47
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family. This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.
Probab=70.24 E-value=11 Score=41.46 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=61.9
Q ss_pred hHHHHHHHhccccceEEEEEeccCCCCCCCceeEEEEEcCCcccccc-eeeCCCCCCCccc-----c----cCCCcceEE
Q 042625 2120 NILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQ-QVHLPSALPEHDF-----L----NDLEPLGWM 2189 (2346)
Q Consensus 2120 NLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~-tVelp~~lP~hd~-----L----eDLE~LGWI 2189 (2346)
+.++++.+..+..+..||.|.|.-. .+.+ +..-+.+|+-++.+ ...|-.....|.. . ..+..||==
T Consensus 4 ~~~~~~~Q~~~~~~EtGGiLiG~~~--~~~~--ii~~~t~P~p~d~~tr~~F~r~~~~~q~~i~~~~~~s~g~~~ylGeW 79 (131)
T TIGR02256 4 AMLKSYRQWHDLSTETGGVLIGERR--GAHA--VITKISEPGSGDIRTRKRFSRDGEHHQSEVDEHFEVSGGVDTYLGEW 79 (131)
T ss_pred HHHHHHHhCcCCCCccceEEEEEEc--CCcE--EEEEEEcCCCCcccCceEEEeCcHHHHHHHHHHHHHhCCceEEEEec
Confidence 4678899999999999999999754 2233 33334555544322 2222222222221 1 238899988
Q ss_pred eeCCCCCCCCCHHhHHHHHHHHhh
Q 042625 2190 HTQPNELPQLSPQDLTSHARILEN 2213 (2346)
Q Consensus 2190 HTQp~El~~LSp~Dv~THAkl~~~ 2213 (2346)
||||...+..|..|..+-.++...
T Consensus 80 HtHP~~~p~PS~~D~~~~~~~~~~ 103 (131)
T TIGR02256 80 HTHPEDQPEPSWTDRRSWRTIIRS 103 (131)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999998875
No 48
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=68.46 E-value=3.4 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=11.1
Q ss_pred cCCcccccccccccccccccccc
Q 042625 269 DRNYFYLFDMESFFTAKALNMCI 291 (2346)
Q Consensus 269 d~ny~yLFd~ksFfTaKalN~aI 291 (2346)
++-+|||.-++-==++ +.|.++
T Consensus 192 ~~~~f~l~aPpi~K~~-kYNY~V 213 (465)
T PF01690_consen 192 DDASFFLVAPPIQKTS-KYNYVV 213 (465)
T ss_pred CCceEEEecCCccccc-ccceEE
Confidence 5666777655433232 235555
No 49
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=66.11 E-value=4.7 Score=58.11 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=6.4
Q ss_pred ccccccccCCCCcc
Q 042625 284 AKALNMCIPGGPKF 297 (2346)
Q Consensus 284 aKalN~aIPgGPKF 297 (2346)
++..-.++..|=.|
T Consensus 1645 s~G~taSLEaGY~f 1658 (1806)
T PRK14849 1645 SRGVTASVEGGYTF 1658 (1806)
T ss_pred cEEEEEEEEcccee
Confidence 34444455554444
No 50
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=65.86 E-value=5.1 Score=51.46 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=2.6
Q ss_pred HHHHHH
Q 042625 49 LEEKAR 54 (2346)
Q Consensus 49 l~~~~~ 54 (2346)
|-.++|
T Consensus 498 LmaqIR 503 (569)
T KOG3671|consen 498 LMAQIR 503 (569)
T ss_pred HHHHHH
Confidence 444444
No 51
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=64.96 E-value=11 Score=47.62 Aligned_cols=126 Identities=24% Similarity=0.314 Sum_probs=87.3
Q ss_pred chhHHHHHHHh-ccccceEEEEEeccCCCCCCCc----ee-EEEEEcCCcccccceeeCCCCCCCcccc-------cCCC
Q 042625 2118 PKNILKKFICI-ADLRTQISGYLYGISPPDNPQV----KE-IRCIAMPPQWGTHQQVHLPSALPEHDFL-------NDLE 2184 (2346)
Q Consensus 2118 PKNLLKKFI~I-SDlRTQIaGyLYG~SP~DNp~V----KE-IrcIVIvPQlGt~~tVelp~~lP~hd~L-------eDLE 2184 (2346)
-+.|+..||.- --.-.|=.||+||.- .+..+| |- |-+|-=|||..-.+.+.+.. ..+ +.| -+|+
T Consensus 240 ~~~iv~~Fi~~WR~sG~QRfGy~yG~y-~~y~n~PLGiKaVveaIyEPpQ~de~DG~t~ee-~~d-e~l~d~~a~~~GL~ 316 (571)
T COG5100 240 GKHIVENFIRNWRESGRQRFGYLYGRY-MDYENIPLGIKAVVEAIYEPPQEDEPDGFTIEE-WAD-EGLMDAPASGTGLE 316 (571)
T ss_pred CchHHHHHHHHHHHhhhhhheeeeeeh-hhccCCcchhHHHhhhhcCCccccCCCceEeee-ecc-cccccccccccCce
Confidence 34455555542 112357789999973 344332 11 45667799999999998832 211 212 6899
Q ss_pred cceEEeeCCC---------------CCCCCCHHhHHHHHHHHhhcCC---CC-----CCcEEEEEEe-ecCCeeEEEEEe
Q 042625 2185 PLGWMHTQPN---------------ELPQLSPQDLTSHARILENNKQ---WD-----GEKCIILTCS-FTPGSCSLTAYK 2240 (2346)
Q Consensus 2185 ~LGWIHTQp~---------------El~~LSp~Dv~THAkl~~~n~~---wd-----~~~sI~Itcs-ftPGS~SLsAy~ 2240 (2346)
-+|-|.|--. +.-|||+-+|..-|+++.+||+ |. +.+.++++++ --.|++.+..|-
T Consensus 317 riG~IfTDl~d~gs~~GsV~ckrh~dsyFLSSLEv~~~A~~Qt~hpn~~k~sr~g~FgSkfvT~Visgnl~GeI~~~sYQ 396 (571)
T COG5100 317 RIGMIFTDLLDEGSNRGSVTCKRHADSYFLSSLEVEFIAKMQTMHPNTVKDSREGEFGSKFVTIVISGNLDGEIGLQSYQ 396 (571)
T ss_pred eeeeeeeehhhccCCCCceeeeccccceehhhhhhHHHhhhhhcCCCcccccccccccceeEEEEEecccCceeeeeEEe
Confidence 9999999543 3457999999999999999987 22 3367888877 557999999998
Q ss_pred cCcchh
Q 042625 2241 LTPSGY 2246 (2346)
Q Consensus 2241 LT~eG~ 2246 (2346)
.+-+|-
T Consensus 397 VSn~~~ 402 (571)
T COG5100 397 VSNQCM 402 (571)
T ss_pred ehhhhh
Confidence 876664
No 52
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=63.98 E-value=4.6 Score=49.68 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=63.5
Q ss_pred EEEEEecc---CCCCCCCceeEEEEEcCCcccccceeeCCCCCCCc-----ccc----cCCCcceEEeeCCCCCCCCCHH
Q 042625 2135 ISGYLYGI---SPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEH-----DFL----NDLEPLGWMHTQPNELPQLSPQ 2202 (2346)
Q Consensus 2135 IaGyLYG~---SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~h-----d~L----eDLE~LGWIHTQp~El~~LSp~ 2202 (2346)
|.|.|++. +=.|.-.|+.+. ..--||-|+.-|+--+.-.|-. +.+ ..+.++||=|.||.=.|-+|.+
T Consensus 56 v~Glm~lg~~~~fv~~~Tv~vv~-v~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGWYHSHP~f~~wpS~v 134 (316)
T KOG1555|consen 56 VMGLMSLGRLPEFVDDYTVRVVD-VFAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGWYHSHPGFGCWPSLV 134 (316)
T ss_pred ccceeecccccceeeecceeeee-eeccccccceecccchhccHHHHHHHHHHHHhcCCcceEEeeccCCCCCCCCcccc
Confidence 77878333 223445555555 4444788888884333333333 122 4467899999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEec
Q 042625 2203 DLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKL 2241 (2346)
Q Consensus 2203 Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~L 2241 (2346)
|+.|++++.+.. +-+...+|...||.. |.+-..||++
T Consensus 135 Di~tQ~syq~~~-~r~~a~~v~~i~S~~-g~vv~d~f~~ 171 (316)
T KOG1555|consen 135 DIDTQQSYQALS-SRAVAVVVDPIQSPY-GKVVPDAFSS 171 (316)
T ss_pred chhHHHHHhhhc-cCCcceeeecccCCC-CCccCChhhh
Confidence 999999999873 333322333333333 3344445544
No 53
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=59.49 E-value=19 Score=42.08 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=58.6
Q ss_pred EechhHHHHHHHhc--cccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccccCCCcceEEeeCC
Q 042625 2116 IMPKNILKKFICIA--DLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQP 2193 (2346)
Q Consensus 2116 VLPKNLLKKFI~IS--DlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~LeDLE~LGWIHTQp 2193 (2346)
.||+.++.+|+..| |.-..+||+|.|. ....+ .+++-|...-.+..-+.+-. . .--+++++++-+|.|+
T Consensus 74 ~Ip~~l~~~ii~hAr~~~P~EacG~Iag~---~~~~~--~r~~p~~N~~~Sp~~~~~d~---~-~~~~ge~lV~iyHSH~ 144 (192)
T TIGR03735 74 PIPASLLEEFAEAARAALPNEVAAWIVWN---SETGS--LRLAALESIEASPGHIDYRR---P-RLDDGEHLVVDLHSHG 144 (192)
T ss_pred CCCHHHHHHHHHHHHhcCCcceEEEEEEc---CCCCE--EEEEeccccccCCceEEEcc---h-HHhCCCeEEEEEcCCC
Confidence 58999999999886 5556699999994 23333 25555555555555555521 1 1128899999999999
Q ss_pred CCCCCCCHHhHH
Q 042625 2194 NELPQLSPQDLT 2205 (2346)
Q Consensus 2194 ~El~~LSp~Dv~ 2205 (2346)
.-..+-|+.|..
T Consensus 145 ~spA~PS~tD~~ 156 (192)
T TIGR03735 145 TGSAFFSETDDA 156 (192)
T ss_pred CCCCCCCcccch
Confidence 999999999953
No 54
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=58.56 E-value=8.2 Score=49.49 Aligned_cols=72 Identities=28% Similarity=0.189 Sum_probs=42.1
Q ss_pred cCCCccCC-----CCC-hhHHHHHHHHHHhccceehhhhhhhHhhhccCCeechhhhhhcchhhhHHHHHHHHHHHHhhh
Q 042625 732 ANIPWKVP-----GLP-VPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYL 805 (2346)
Q Consensus 732 Anipwkvp-----gmp-~pi~~iI~rYVK~KAdww~~~a~ynReRI~rg~tVdKtv~kKNlGRlTRL~lK~EqeRQ~~yl 805 (2346)
.+-||.+. .++ .+-.+|..+-||+-. -=++.+.-.|||=++- .-+|-|-|-..+-|-.+| =|.+||
T Consensus 738 ~~~~~t~~~~~~p~~~~d~~DEImd~lVKsAT-~~~~~~~~~reRkrsr------~NRKSLRRTlksgl~d~~-~~algl 809 (817)
T KOG1925|consen 738 TVGPSTASPEEPPSLPSDTSDEIMDLLVKSAT-KSSPRALAARERKRSR------GNRKSLRRTLKSGLGDDL-VQALGL 809 (817)
T ss_pred CCCCCccCCCCCCCCCCChHHHHHHHHHHHHh-cCCChhhhHHHHHHhh------hhHHHHHHHHhccCChHH-HHHhcc
Confidence 35667643 444 456678888888632 2233444456665432 245666666666676664 456777
Q ss_pred cCCCCc
Q 042625 806 KDGPYV 811 (2346)
Q Consensus 806 k~gpyl 811 (2346)
..||-+
T Consensus 810 ~~~~~l 815 (817)
T KOG1925|consen 810 SKGPGL 815 (817)
T ss_pred cCCCCC
Confidence 777755
No 55
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=54.30 E-value=34 Score=36.23 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.7
Q ss_pred CcceEEeeCCCCCCCCCHHhHH
Q 042625 2184 EPLGWMHTQPNELPQLSPQDLT 2205 (2346)
Q Consensus 2184 E~LGWIHTQp~El~~LSp~Dv~ 2205 (2346)
+++|..|+||+..+..|..|+.
T Consensus 60 ~ivgi~HSHP~~~a~PS~~D~~ 81 (108)
T cd08073 60 EIVAVVHSHPDGSPAPSEADRA 81 (108)
T ss_pred CEEEEEEcCCCCCCCCCHHHHH
Confidence 8999999999999999999973
No 56
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=54.03 E-value=22 Score=36.34 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=43.5
Q ss_pred cceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCC--cccc-cCCCcceEEeeCCCCCCCCCHHhHHHHH
Q 042625 2132 RTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPE--HDFL-NDLEPLGWMHTQPNELPQLSPQDLTSHA 2208 (2346)
Q Consensus 2132 RTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~--hd~L-eDLE~LGWIHTQp~El~~LSp~Dv~THA 2208 (2346)
....||+|+|.+ ++ .+..+..+|. |+. ++ .|. ..-+ .+.+.+|..|+||+..+..|..|+..-.
T Consensus 15 p~E~~gll~~~~--~~----~~~~~~~~~~-~~~---~~---~~~~~~~a~~~~~~~v~i~HsHP~g~~~PS~~D~~~~~ 81 (101)
T cd08059 15 PDEFCGFLSGSK--DN----VMDELIFLPF-VSG---SV---SAVIDLAALEIGMKVVGLVHSHPSGSCRPSEADLSLFT 81 (101)
T ss_pred ChhhheeeecCC--CC----eEEEEEeCCC-cCC---cc---ChHHHHHHhhCCCcEEEEEecCcCCCCCCCHHHHHHHH
Confidence 456999999964 23 2455555564 321 11 122 1222 7889999999999999999999986444
Q ss_pred HH
Q 042625 2209 RI 2210 (2346)
Q Consensus 2209 kl 2210 (2346)
.+
T Consensus 82 ~~ 83 (101)
T cd08059 82 RF 83 (101)
T ss_pred hc
Confidence 43
No 57
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=52.20 E-value=39 Score=35.79 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=44.9
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHhcccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecC
Q 042625 1033 SHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFT 1112 (2346)
Q Consensus 1033 ~~~N~~GlirGlqFssFv~q~y~lilDLliLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~ 1112 (2346)
.+....|+-.|.-.|+.++.+|.--+|-.+.-.. ........|+||+|.+.++.. +
T Consensus 13 ~~~~~~GlpQG~~lSp~L~nl~l~~l~~~~~~~~-----------------------~~~~~~~~~~rYaDD~li~~~-~ 68 (119)
T cd01648 13 YYRQKVGIPQGSPLSSLLCSLYYADLENKYLSFL-----------------------DVIDKDSLLLRLVDDFLLITT-S 68 (119)
T ss_pred hhhhcCcccCCcchHHHHHHHHHHHHHHHHHhhc-----------------------ccCCCCceEEEEeCcEEEEeC-C
Confidence 6778889999999999999999988888765210 001123579999999866654 3
Q ss_pred hHHHHHHH
Q 042625 1113 HEEARDLI 1120 (2346)
Q Consensus 1113 ~~E~~~Li 1120 (2346)
++++...+
T Consensus 69 ~~~~~~~~ 76 (119)
T cd01648 69 LDKAIKFL 76 (119)
T ss_pred HHHHHHHH
Confidence 44444433
No 58
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=52.01 E-value=11 Score=51.29 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.2
Q ss_pred ccHHHHHHHhhcCCCCccccc
Q 042625 113 FIPHAVYKLLENMPMPWEQVR 133 (2346)
Q Consensus 113 y~PhAi~klLenmPmPWE~vr 133 (2346)
+-.-.+=+++.-+|-++|+.+
T Consensus 500 ~~~~~l~~l~~~~pt~~E~~~ 520 (833)
T KOG1922|consen 500 LGLDQLEKLLKFAPTKEEETK 520 (833)
T ss_pred cCHHHHHHHHccCCChhHHHH
Confidence 455667788889999998754
No 59
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=51.81 E-value=12 Score=54.41 Aligned_cols=8 Identities=25% Similarity=0.268 Sum_probs=3.9
Q ss_pred eeeecccc
Q 042625 345 VRLGIYHT 352 (2346)
Q Consensus 345 v~~~~yh~ 352 (2346)
+++.|.|.
T Consensus 1968 lEANWiHn 1975 (2039)
T PRK15319 1968 AEANWLHT 1975 (2039)
T ss_pred EEEEEEEe
Confidence 44445554
No 60
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=48.63 E-value=42 Score=35.65 Aligned_cols=50 Identities=22% Similarity=0.556 Sum_probs=36.9
Q ss_pred EEEEe-ccceEEEEe----------eeeccCcccccccceeEEEEecCCCceEEEEEeecc
Q 042625 1788 IWFVD-DTNVYRVTI----------HKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSV 1837 (2346)
Q Consensus 1788 ~wfVD-DtnvYRvti----------hkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsv 1837 (2346)
.+-+. +.+-|.|++ ...|+|+....--.-||+||||.||..-|.=+++.+
T Consensus 40 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~f~G~~~~~~~~ecVLifD~~~~~f~LErl~s~~ 100 (109)
T PF09816_consen 40 TLYVGSSNDEYTLTLPNPNGSGNNETYVFKGSQRPSKEKECVLIFDPETGEFVLERLSSTI 100 (109)
T ss_pred EEEecCCCCeEEEEEeCCCCCCCcccEEEEeccCCCCCcEEEEEEECCCCEEEEEEcceEE
Confidence 34455 677888888 257888744444458999999999999998777654
No 61
>PLN03246 26S proteasome regulatory subunit; Provisional
Probab=48.05 E-value=48 Score=41.04 Aligned_cols=110 Identities=21% Similarity=0.326 Sum_probs=69.5
Q ss_pred hHHHHHHHhccc-cceEEEEEeccCCCCCCCceeEE-EEEcCCcccccce--eeCCCCCCCcccc-----------cCCC
Q 042625 2120 NILKKFICIADL-RTQISGYLYGISPPDNPQVKEIR-CIAMPPQWGTHQQ--VHLPSALPEHDFL-----------NDLE 2184 (2346)
Q Consensus 2120 NLLKKFI~ISDl-RTQIaGyLYG~SP~DNp~VKEIr-cIVIvPQlGt~~t--Velp~~lP~hd~L-----------eDLE 2184 (2346)
|+++.+.+.+.- .-+|.|-|.|... ..+-||. |+.+|..-...+. +.+ +++|. .+..
T Consensus 17 ~I~dh~~R~~~~~~~rviG~LLG~~~---~~~ieItnsF~~p~~e~~~~~~~~~~-----D~~y~~~m~~~~k~V~~~~~ 88 (303)
T PLN03246 17 SIVDHYNRVAKDTRKRVVGVLLGSSF---RGRVDVTNSFAVPFEEDDKDPSIWFL-----DHNYLESMFGMFKRINAKEH 88 (303)
T ss_pred HHHHHHHhccCCCCCeeEEEEEeeec---CCEEEEEeccccCcccCCCCccceee-----cHHHHHHHHHHHHHhCCCCc
Confidence 667777766432 3458899999752 2355775 5666543222221 111 13332 6779
Q ss_pred cceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecC--CeeEEEEEecCcchh
Q 042625 2185 PLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTP--GSCSLTAYKLTPSGY 2246 (2346)
Q Consensus 2185 ~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftP--GS~SLsAy~LT~eG~ 2246 (2346)
++||-+|.+ .+++.|+..|.-+...++ +.|.+++...+ +...+.||.-.++|.
T Consensus 89 vVGWY~tg~----~i~~~d~~IH~~~~~~~~-----~Pv~L~vD~~~~~~~lpi~aY~s~~~~~ 143 (303)
T PLN03246 89 VVGWYSTGP----KLRENDLDIHELFNDYVP-----NPVLVIIDVQPKELGIPTKAYYAVEEVK 143 (303)
T ss_pred EEeeecCCC----CCCcchHHHHHHHHhhCC-----CCeEEEEecCCCCCCCceEEEEEEEecc
Confidence 999998853 367899999987766543 24666666444 557788998877775
No 62
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=47.02 E-value=12 Score=54.23 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.5
Q ss_pred cccccc
Q 042625 349 IYHTPM 354 (2346)
Q Consensus 349 ~yh~p~ 354 (2346)
||-.|+
T Consensus 1673 W~LEPQ 1678 (1806)
T PRK14849 1673 WYVQPQ 1678 (1806)
T ss_pred EEEeeE
Confidence 444443
No 63
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=46.53 E-value=6.6 Score=49.38 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccc
Q 042625 53 ARKWMQLNSKRYG 65 (2346)
Q Consensus 53 ~~~w~~~~~~~~~ 65 (2346)
+-+|.-|--.|||
T Consensus 96 ifRwdLLVGERYG 108 (386)
T PF01698_consen 96 IFRWDLLVGERYG 108 (386)
T ss_dssp -------------
T ss_pred Hhhhhhhhhhhhh
Confidence 3345555555555
No 64
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=37.78 E-value=28 Score=46.83 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCC---CCccccccCCCchhHH
Q 042625 15 PPGTSGAVPIPPPPSQ---PSYTVLTTTPSPQEAE 46 (2346)
Q Consensus 15 pp~~~~~~p~~~~p~~---~s~~~~s~~~~~~~~~ 46 (2346)
|||+.+-||||||+++ |-+.++---|....+|
T Consensus 1033 ~pP~~g~P~PpPp~~~~k~p~~~A~Y~y~gq~~dE 1067 (1106)
T KOG0162|consen 1033 PPPPAGRPKPPPPAKPPKNPVCEALYDYPGQDVDE 1067 (1106)
T ss_pred CCCCCCCCCccCCCCCCCCcceeeeccCCCCCccc
Confidence 3344343445555555 5566665555554333
No 65
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=36.06 E-value=37 Score=39.46 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=10.2
Q ss_pred ccccCCCchhHHHHHHHH
Q 042625 35 VLTTTPSPQEAEARLEEK 52 (2346)
Q Consensus 35 ~~s~~~~~~~~~~~l~~~ 52 (2346)
.++-.|++..+...|+-+
T Consensus 198 ~~t~s~s~~~~~~~~~~q 215 (225)
T KOG3397|consen 198 MVTRSTSPIVDVNTIDHQ 215 (225)
T ss_pred ceecCCCCCCChhhHHHH
Confidence 344446666666666544
No 66
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=34.69 E-value=30 Score=44.82 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=3.8
Q ss_pred cccchhhh
Q 042625 538 KTLTTKER 545 (2346)
Q Consensus 538 KtLTTKER 545 (2346)
++|||.||
T Consensus 435 ~kLTteQR 442 (465)
T PF01690_consen 435 SKLTTEQR 442 (465)
T ss_pred cccCHHHH
Confidence 34555544
No 67
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=32.59 E-value=22 Score=28.58 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=4.5
Q ss_pred ccCCCCCCCCC
Q 042625 1314 LNSKMPSRFPP 1324 (2346)
Q Consensus 1314 LNSKMPsRFPp 1324 (2346)
+||-||.|+++
T Consensus 10 I~sAmPk~~~~ 20 (20)
T PF05924_consen 10 IGSAMPKRRRK 20 (20)
T ss_dssp HHCTS------
T ss_pred HHHhcccccCC
Confidence 78999999875
No 68
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.26 E-value=65 Score=42.75 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhc
Q 042625 48 RLEEKARKWMQLNSK 62 (2346)
Q Consensus 48 ~l~~~~~~w~~~~~~ 62 (2346)
.+.+=.+.|.++...
T Consensus 463 ~~~~~~~~w~~~~~~ 477 (585)
T PRK14950 463 VLEQLEAIWKQILRD 477 (585)
T ss_pred hHHHHHHHHHHHHHH
Confidence 355556789886443
No 69
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=27.87 E-value=20 Score=45.39 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=0.0
Q ss_pred cccccccccCCChHHHHhhhc
Q 042625 70 FGFVEAQKEDMPPEHVRKIIR 90 (2346)
Q Consensus 70 ~~~~~~~k~~mppehlrkii~ 90 (2346)
.||....-.+|--|.|-..|+
T Consensus 71 lGFTvsTLl~M~deELDdmM~ 91 (386)
T PF01698_consen 71 LGFTVSTLLNMTDEELDDMMN 91 (386)
T ss_dssp ---------------------
T ss_pred hcccHHHHhcccHHHHHHHHH
Confidence 478777788999998887774
No 70
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=27.77 E-value=47 Score=41.66 Aligned_cols=6 Identities=67% Similarity=1.237 Sum_probs=2.9
Q ss_pred CCCCCC
Q 042625 8 NGGPPL 13 (2346)
Q Consensus 8 ~~~~~~ 13 (2346)
||.|||
T Consensus 251 ~Gqppp 256 (498)
T KOG4849|consen 251 NGQPPP 256 (498)
T ss_pred CCCCCC
Confidence 455444
No 71
>PHA03211 serine/threonine kinase US3; Provisional
Probab=26.89 E-value=59 Score=41.79 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=13.3
Q ss_pred HHHHhhhhHhHHhhhccCCceeeeccccCCccccccc
Q 042625 505 QVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLT 541 (2346)
Q Consensus 505 qvcrQG~nMLnlLIhRK~L~yLhLDyNFNLKp~KtLT 541 (2346)
++++|=-..|.. +|.+| .+|-| |||-..|-
T Consensus 264 ~i~~qi~~aL~y-LH~~g--IvHrD----LKP~NILl 293 (461)
T PHA03211 264 AVARQLLSAIDY-IHGEG--IIHRD----IKTENVLV 293 (461)
T ss_pred HHHHHHHHHHHH-HHHCC--EEECc----CCHHHEEE
Confidence 344443334443 35554 34443 55555444
No 72
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=25.34 E-value=2e+02 Score=28.47 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=42.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHhcccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecC-hHHHHH
Q 042625 1040 LIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFT-HEEARD 1118 (2346)
Q Consensus 1040 lirGlqFssFv~q~y~lilDLliLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~-~~E~~~ 1118 (2346)
+-.|...|+++++.|.--+|-.+.. ..+--.|.||+|.+.+..+-. ..++..
T Consensus 12 lPqG~~~Sp~l~~~~~~~l~~~~~~---------------------------~~~~~~~~~Y~DD~~i~~~~~~~~~~~~ 64 (98)
T cd00304 12 LPQGSPLSPALANLYMEKLEAPILK---------------------------QLLDITLIRYVDDLVVIAKSEQQAVKKR 64 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHH---------------------------hcCCceEEEeeCcEEEEeCcHHHHHHHH
Confidence 7789999999999999988866552 011257999999999887653 334455
Q ss_pred HHHHhhhc
Q 042625 1119 LIQRYLTE 1126 (2346)
Q Consensus 1119 Li~~yL~e 1126 (2346)
.+...|.+
T Consensus 65 ~l~~~l~~ 72 (98)
T cd00304 65 ELEEFLAR 72 (98)
T ss_pred HHHHHHHH
Confidence 55555544
No 73
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=24.88 E-value=25 Score=44.10 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=32.9
Q ss_pred cccccccc--ccccccccccccccccchhhhcccCCCcccccccccCccc----ccCCchhHHHH
Q 042625 1429 RINTLFQK--DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLW----NLNNYRTDVIQ 1487 (2346)
Q Consensus 1429 RI~TLfqk--dR~tLaYDkGwRvR~~fk~y~~~k~npFwWT~~~HDGKLW----nLn~YrtDvIq 1487 (2346)
|++.+|-. +++|..||-|||+...-.- ||=-..+|||+=| ..++|.-++=|
T Consensus 232 rr~~~~~d~~~~f~ypydlgWr~n~r~vf--------~~~~~~~gdg~~wPv~~gc~qytlt~eq 288 (414)
T KOG1314|consen 232 RREYYFNDDEGEFTYPYDLGWRINLREVF--------FQNKKEEGDGIEWPVVEGCVQYTLTIEQ 288 (414)
T ss_pred HHHhhccCCCCceeeeccccccccHHHHh--------hhccccCCCCccccccCcccccceeHHH
Confidence 33334444 7899999999996432211 2222489999999 47777766544
No 74
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=24.78 E-value=55 Score=42.63 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=9.0
Q ss_pred HHHHHhhcCCCCcc
Q 042625 117 AVYKLLENMPMPWE 130 (2346)
Q Consensus 117 Ai~klLenmPmPWE 130 (2346)
.|-|+|.-||-|=|
T Consensus 388 GIEK~L~MmPt~eE 401 (817)
T KOG1925|consen 388 GIEKLLTMMPTEEE 401 (817)
T ss_pred hHHHHHHhCCCHHH
Confidence 45577777776644
No 75
>PF08388 GIIM: Group II intron, maturase-specific domain; InterPro: IPR013597 This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing [].
Probab=24.36 E-value=1.3e+02 Score=29.38 Aligned_cols=63 Identities=19% Similarity=0.410 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHh-HhcCcchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhhhccc
Q 042625 1248 MKVFENRVRQIL-MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLN 1315 (2346)
Q Consensus 1248 i~~F~nrirqIl-mssgStTFtKIa~KWNt~li~l~tYfREA~~~T~~lld~Lvk~E~KIq~RIK~GLN 1315 (2346)
|+.|..+|+.++ -.+-+.+...++.+-|..|-|-.-||+-+. +... +.++..-+..|+-.=++
T Consensus 1 ik~~~~kik~~~~~~~~~~~~~~~i~~LN~~lrGW~nYy~~~~--~~~~---f~~ld~~v~~~l~~w~~ 64 (80)
T PF08388_consen 1 IKRFRRKIKEITRRRNRGKSLEELIKKLNPILRGWANYYRIGN--SSKT---FSKLDHYVWRRLRRWLR 64 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcchh--HHHH---HHHHHHHHHHHHHHHHH
Confidence 578999999999 444568999999999999999999999883 4443 34444555555544333
No 76
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=22.70 E-value=1.5e+02 Score=38.59 Aligned_cols=58 Identities=28% Similarity=0.450 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccccCCCchh-----HHHHHHHHHHHHHH--hhhccccc
Q 042625 9 GGPPLAPPGTSGAVPIPPPPSQPSYTVLTTTPSPQE-----AEARLEEKARKWMQ--LNSKRYGD 66 (2346)
Q Consensus 9 ~~~~~~pp~~~~~~p~~~~p~~~s~~~~s~~~~~~~-----~~~~l~~~~~~w~~--~~~~~~~~ 66 (2346)
|.-|++-.+..+|++++.||.+|+-|-..+-|.|.. -++-|.++.++++. ++.|+-|+
T Consensus 163 gpep~~vAp~aAAel~~~Ppaqp~~Pt~pss~ppprasts~qlalllerq~qyq~AAiqAKs~gD 227 (523)
T KOG3837|consen 163 GPEPPQVAPSAAAELPSQPPAQPTAPTTPSSPPPPRASTSGQLALLLERQRQYQVAAIQAKSKGD 227 (523)
T ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhhcc
No 77
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=20.99 E-value=50 Score=29.35 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=14.0
Q ss_pred hHHHHHhcCcccccccc
Q 042625 1483 TDVIQALGGVEGILEHT 1499 (2346)
Q Consensus 1483 tDvIqaLGGvE~ILEHT 1499 (2346)
.++++++||.|+|.+.+
T Consensus 2 ~~il~~lGG~~NI~~v~ 18 (35)
T PF00367_consen 2 KQILEALGGKENIKSVT 18 (35)
T ss_dssp HHHHHHCTTCCCEEEEE
T ss_pred hHHHHHhCCHHHHHHHh
Confidence 46899999999997654
No 78
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=20.79 E-value=1e+02 Score=38.07 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcc
Q 042625 12 PLAPPGTSGAVPIPPPPSQPSYT 34 (2346)
Q Consensus 12 ~~~pp~~~~~~p~~~~p~~~s~~ 34 (2346)
||+||+++++.+..+.+..|+-+
T Consensus 3 pp~~~~~~~~~~~~~~~~~~~~~ 25 (276)
T PF12037_consen 3 PPSQPGPADSGGSKPRNDNPRTT 25 (276)
T ss_pred CCCCCCCCCCCCcCCCCCCCCcc
Confidence 34444444433333444444444
No 79
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=20.64 E-value=99 Score=33.21 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCccc
Q 042625 22 VPIPPPPSQPSYTV 35 (2346)
Q Consensus 22 ~p~~~~p~~~s~~~ 35 (2346)
.|+|++|+-=||=-
T Consensus 78 ~pppr~PSviSYF~ 91 (97)
T PF04834_consen 78 EPPPRPPSVISYFH 91 (97)
T ss_pred CCCCCCCCeeeEEe
Confidence 34455555556543
No 80
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=20.30 E-value=73 Score=41.03 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCCCCCC----CCCCCCCCCCCCCc
Q 042625 10 GPPLAPPGTS----GAVPIPPPPSQPSY 33 (2346)
Q Consensus 10 ~~~~~pp~~~----~~~p~~~~p~~~s~ 33 (2346)
++||+|.+.+ .+|||||||++|++
T Consensus 386 ~~pphp~p~~~~~~sppPppppppppg~ 413 (518)
T KOG1830|consen 386 LCPPHPLPQGAFFGSPPPPPPPPPPPGP 413 (518)
T ss_pred CCCCCCCCcccccCCCCCCCCCCCCCCC
Done!