Query 042625
Match_columns 2346
No_of_seqs 148 out of 209
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 13:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sbg_A PRE-mRNA-splicing facto 100.0 2E-236 6E-241 2054.7 42.8 553 1773-2330 2-565 (565)
2 3sbt_A PRE-mRNA-splicing facto 100.0 4E-125 2E-129 1026.5 22.5 259 1773-2031 2-260 (260)
3 3e9l_A PRE-mRNA-processing-spl 100.0 7E-124 2E-128 1016.0 21.9 257 1771-2027 1-257 (257)
4 3enb_A PRE-mRNA-processing-spl 100.0 4E-108 1E-112 880.4 19.6 222 1780-2001 1-222 (222)
5 2p8r_A PRP8, PRE-mRNA-splicing 100.0 7E-98 2E-102 838.8 25.1 272 2075-2346 1-273 (273)
6 2og4_A PRE-mRNA-splicing facto 100.0 9.8E-92 3.4E-96 782.9 23.9 251 2076-2330 1-254 (254)
7 3rzv_A STAM-binding protein; u 99.9 5.3E-25 1.8E-29 243.1 8.5 151 2111-2271 40-196 (211)
8 2znr_A AMSH-like protease; met 99.9 1.2E-23 4.3E-28 226.7 8.2 150 2112-2271 8-163 (178)
9 4b4t_V 26S proteasome regulato 98.2 2.2E-06 7.6E-11 99.9 7.6 127 2113-2246 25-163 (306)
10 2kcq_A MOV34/MPN/PAD-1 family; 97.5 0.00014 4.8E-09 76.7 8.2 113 2116-2244 2-128 (153)
11 2kks_A Uncharacterized protein 97.2 0.00023 7.9E-09 74.5 5.3 113 2115-2243 2-125 (146)
12 1oi0_A AF2198, hypothetical pr 96.6 0.0041 1.4E-07 63.5 7.7 105 2115-2241 4-111 (124)
13 2o95_A 26S proteasome non-ATPa 94.5 0.061 2.1E-06 58.3 7.4 99 2131-2246 32-146 (187)
14 2v8f_C MDIA1, profilin IIA; al 85.3 0.48 1.6E-05 37.7 2.5 22 11-32 3-24 (26)
15 4e0q_A COP9 signalosome comple 83.1 1.1 3.8E-05 47.5 5.0 84 2132-2232 32-126 (141)
16 2v8f_C MDIA1, profilin IIA; al 73.4 1.8 6.3E-05 34.5 2.3 22 13-34 2-23 (26)
17 4b4t_U RPN8, 26S proteasome re 64.8 8.1 0.00028 46.0 6.5 111 2120-2245 17-143 (338)
18 3kyl_A Telomerase reverse tran 38.6 46 0.0016 42.4 7.2 110 984-1121 245-360 (596)
19 1nxk_A MAP kinase-activated pr 24.2 16 0.00055 43.1 0.0 11 461-471 298-308 (400)
20 1nxk_A MAP kinase-activated pr 20.9 21 0.00071 42.2 0.0 15 454-468 313-327 (400)
21 2h6f_A Protein farnesyltransfe 20.7 21 0.00072 42.4 0.0 12 661-672 358-369 (382)
22 3pgw_A U1-A; protein-RNA compl 20.2 83 0.0028 35.0 4.6 30 76-105 215-244 (282)
23 3fm7_C Dynein intermediate cha 20.1 28 0.00095 28.7 0.6 24 1336-1359 2-26 (27)
No 1
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-236 Score=2054.73 Aligned_cols=553 Identities=55% Similarity=0.947 Sum_probs=487.9
Q ss_pred ccCCCChhhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhhhh
Q 042625 1773 YLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKT 1852 (2346)
Q Consensus 1773 ~l~s~Ny~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~Qlakwkt 1852 (2346)
|||||||||||+||++||||||||||||||||||||++|||||||||||||+||||||||||||||||||||+|||||||
T Consensus 2 ~Lns~Ny~eLF~nq~~~fvDDtnVYRVtihkTfEGN~tTKpiNGaififNP~TGqLfLKiIHtsvwaGQKRl~QlaKWKt 81 (565)
T 3sbg_A 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKT 81 (565)
T ss_dssp CBCTTGGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSSHHHHHHHHH
T ss_pred cccccchHHHhcCceEEEEeCCcEEEEEEEeeccCceeeccccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHhHhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeeehh
Q 042625 1853 AEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYD 1932 (2346)
Q Consensus 1853 AeEvaalirSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNlYD 1932 (2346)
||||||||||||+||||||||||||||||||||||||||||+||||||+|||||+||+|||+|+||||||||||||||||
T Consensus 82 AEEvaaLirSlP~EEqPkqiIvtrkgmlDpLevhllDfPni~ik~seL~lPF~a~mkiek~~D~ilkAtepqmvlfnlYD 161 (565)
T 3sbg_A 82 AEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYD 161 (565)
T ss_dssp HHHHHHHHHHSCTTTSCSEEEESSGGGHHHHHHHTTTCTTSEEECBSSCCGGGGGGSSHHHHHHHHHCCSCEEEEEETTT
T ss_pred HHHHHHHHhcCCHhhCCceEEEechhhhhhHHHhhccCCCceeeccccccCHHHHhhhHHHHHHHhhcCCCcEEEEEeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccChhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcCCc
Q 042625 1933 DWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSA 2012 (2346)
Q Consensus 1933 dWL~siSsyTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~dy~kk~nV~~~s 2012 (2346)
|||++||||||||||||||||||||++|||+||+||++++|++||+||+|||||||+||++||||||+|||||||||++|
T Consensus 162 dWL~siSsyTAFsRliLiLRal~vn~~ktk~iL~pd~~~~t~~hHiWPslsd~~Wi~vE~~lkDLIL~dY~kknnvn~~s 241 (565)
T 3sbg_A 162 DWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA 241 (565)
T ss_dssp TGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHTSSTTSCBCTTCSSBCCCHHHHHHHHHHHHHHHHHTTTTTSCCCGGG
T ss_pred hhhhcccchHHHHHHHHHHHHhccCHHHHHHHhcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhceeccccCCCchhHHHHHHHHHHhhh-------hcceEEEEEeeecccCceEEEEecCcccccccccchhhh
Q 042625 2013 LTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKE-------ASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWR 2085 (2346)
Q Consensus 2013 LtqsEirDIILG~ei~~pS~~rq~~~eie~~~~~-------~~~~t~~~t~t~n~~G~~i~~~t~s~yE~~~f~skt~WR 2085 (2346)
|||||||||||||||+|||+|||||||||++.++ ++|+||+||||+|+|||||+|+|+|||||++|+||||||
T Consensus 242 LTqsEIrDIILG~~i~~pS~qrqq~aeie~~~~~~~~~~~~~~q~Ta~tTkT~NvhGeeIiv~Tts~YEqq~FsSKtdWR 321 (565)
T 3sbg_A 242 LTQTEIKDIILGQNIKAPSVKRQKMAELEAARSEKQNDEEAAGASTVMKTKTINAQGEEIVVVASADYESQTFSSKNEWR 321 (565)
T ss_dssp CCHHHHHHHHHTC-------------------------------------------------------------CHHHHH
T ss_pred ccHhhHhhhhhccccCCcchHHHHHHHHHHhhhcccccchhhhceeEEEEEEEecCCCEEEEEecCcccccccccccchH
Confidence 9999999999999999999999999999999998 779999999999999999999999999999999999999
Q ss_pred HhHhhhccccccccceeeccccccccccEEEechhHHHHHHHhccccceEEEEEeccCCCCCCCceeEEEEEcCCccccc
Q 042625 2086 VRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTH 2165 (2346)
Q Consensus 2086 ~Rai~~~~L~lr~~~i~v~~~d~~e~~~tyVLPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~ 2165 (2346)
+|||++++||||++||||+++|+.+++++||||+||++|||+|||+||||||||||++|+||++||||+|||||||+||+
T Consensus 322 ~RAIaatnL~lR~~nIYV~sdd~~e~~~tyVlPkNLLkKFI~IADlrTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~ 401 (565)
T 3sbg_A 322 KSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHV 401 (565)
T ss_dssp HHHHHHTTGGGGGGSEEECCCCCCTTSCEEEEEHHHHHHHHHHSCSSSCCEEEEEEEEETTEEEEEEEEEEECCCEEECS
T ss_pred HHHhhhcchhhhhceEEECcccccCCCcEEEccHHHHHHHHHHhhccceeEEEEecCCCCCCCCeEEEEEEEECCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCCCCcc---cccCCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecC
Q 042625 2166 QQVHLPSALPEHD---FLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLT 2242 (2346)
Q Consensus 2166 ~tVelp~~lP~hd---~LeDLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT 2242 (2346)
++|++| ++|+|+ +++|||+||||||||+|+|||||+||+|||++|++|+ + ++|+||||||||||||+||+||
T Consensus 402 ~sv~lp-~lp~he~~~~l~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~---~-~~I~itvsftPGS~SLsAy~LT 476 (565)
T 3sbg_A 402 GSVQIS-NIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKK---R-DCIDISIFSTPGSVSLSAYNLT 476 (565)
T ss_dssp SCEEEC-CCCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSC---T-TCEEEEEEEETTEEEEEEEEEC
T ss_pred ceEECC-CCCccccccccccCEecceeeecCCcccccCHHHHHHHHHHHHhCC---C-CeEEEEEEecCCceEEEEEecC
Confidence 999999 999999 8899999999999999999999999999999999997 5 7899999999999999999999
Q ss_pred cchhcccccccCC-CCCCCCCCCCcceEeeEEeecccceEEEeeCCCCccccccccccCCCceEEEEECCcccCccccCC
Q 042625 2243 PSGYEWGRVNKDT-GSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHR 2321 (2346)
Q Consensus 2243 ~eG~eWG~~Nk~~-~~~~~g~~~~~~~~~q~llsd~~~g~flvP~~~~WNy~f~~~~~~~~~~y~~~~~~P~~fy~~~hr 2321 (2346)
++|||||++|+|. .++|+||+|+|++|+||+|||||+||||||++|+|||+|||+.|+++|+|+|++|+|++||||+||
T Consensus 477 ~eGyeWG~~N~d~~~~~p~g~~~~~~~~~q~llSd~~~G~flvP~~~~WNy~f~g~~~~~~~~y~l~l~~P~~fy~e~HR 556 (565)
T 3sbg_A 477 DEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHR 556 (565)
T ss_dssp HHHHHHHHTTTTCCSSCCTTCCGGGEEECEEEEETTSCCEEEEETTSCCBCTTCGGGCCTTCCCCEEECCCCCTTCTTSS
T ss_pred HhHHHHHhhcccccccCCCCCCccccceeEEEEecceeeEEEccCCCcccccccccccCCCCeeeEEeCCchhhhccccc
Confidence 9999999999996 559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 042625 2322 PTHFLEFSN 2330 (2346)
Q Consensus 2322 ~~hf~~f~~ 2330 (2346)
|.||++|++
T Consensus 557 p~HF~~F~~ 565 (565)
T 3sbg_A 557 PVHFLQFSE 565 (565)
T ss_dssp CC-------
T ss_pred hHhHhcccC
Confidence 999999974
No 2
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=100.00 E-value=4.4e-125 Score=1026.53 Aligned_cols=259 Identities=69% Similarity=1.124 Sum_probs=252.7
Q ss_pred ccCCCChhhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhhhh
Q 042625 1773 YLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKT 1852 (2346)
Q Consensus 1773 ~l~s~Ny~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~Qlakwkt 1852 (2346)
||||+||||||+||++||||||||||||+|||||||++|||||||||||||+||||||||||||||||||||+|||||||
T Consensus 2 ~l~s~ny~eLF~n~~~wfvDDtnvYrvt~hkT~eGn~~tkpiNG~ififnP~TGqLfLKiihtsvwaGQKRl~qlaKwKt 81 (260)
T 3sbt_A 2 AMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKT 81 (260)
T ss_dssp CBCTTSGGGGGSSSCEEEEECTTTSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHHHH
T ss_pred ccccccHHHHhcCceEEEEeCCcEEEEEEEeccCCCceeccccceEEEEeCCCCcEEEEEEehhhcccchHHHHHHHHhH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeeehh
Q 042625 1853 AEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYD 1932 (2346)
Q Consensus 1853 AeEvaalirSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNlYD 1932 (2346)
||||||||||||+||||||||||||||+|||||||+|||||+||||||+|||+|+||++||+|+|++||||||++|||||
T Consensus 82 AEEvaalirSlP~eEqPkqiIVtrk~mldpLevhllDfPnI~Ik~sel~lpF~a~mki~k~~d~vlkatep~m~lfnlYD 161 (260)
T 3sbt_A 82 AEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSIDKLSDVVMKATEPQMVLFNIYD 161 (260)
T ss_dssp HHHHHHHHHHSCGGGSCSEEEESSGGGHHHHHHHTTTCTTSEEECBSCCCCGGGGGGSHHHHHHHHHCSSCEEEEEETTT
T ss_pred HHHHHHHHHcCCHhhCCceEEEechHhhhHHHHHhhhCCCceeeccccccCHHHHhhhHHHHHHHHhcCCCceEEEEeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccChhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcCCc
Q 042625 1933 DWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSA 2012 (2346)
Q Consensus 1933 dWL~siSsyTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~dy~kk~nV~~~s 2012 (2346)
|||++||||||||||+|||||||||++|||+||+||+++++++||+||+|||||||+||++||||||+|||||+|||++|
T Consensus 162 dWL~siS~~TAFsRLiLiLR~l~vn~~k~k~iL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkDLIl~dy~kk~nvn~~s 241 (260)
T 3sbt_A 162 DWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPSFTDEQWITIESQMRDLILTEYGRKYNVNISA 241 (260)
T ss_dssp TGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHHSSCTTSCCCTTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred hhhhccccHHHHHHHHHHHHHhccCHHHHHHhhCCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhceeccccCCCc
Q 042625 2013 LTQSEIRDIILGAEITPPS 2031 (2346)
Q Consensus 2013 LtqsEirDIILG~ei~~pS 2031 (2346)
|||||||||||||+|+|||
T Consensus 242 LTqsEIrDIILG~~i~~ps 260 (260)
T 3sbt_A 242 LTQTEIKDIILGQNIKAPS 260 (260)
T ss_dssp CCHHHHHHHHHCC------
T ss_pred ccHHHHHHHhhccccCCCC
Confidence 9999999999999999997
No 3
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14
Probab=100.00 E-value=6.9e-124 Score=1016.02 Aligned_cols=257 Identities=91% Similarity=1.412 Sum_probs=256.1
Q ss_pred CcccCCCChhhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhh
Q 042625 1771 EPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKW 1850 (2346)
Q Consensus 1771 e~~l~s~Ny~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~Qlakw 1850 (2346)
||||||+||||||+||++||||||||||||+|||||||++|||||||||||||+||||||||||||||||||||+|||||
T Consensus 1 e~~l~s~ny~eLF~n~~~wfvDDtnvYrvt~h~T~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKw 80 (257)
T 3e9l_A 1 EPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKW 80 (257)
T ss_dssp CEEECTTTGGGGGSSSCEEEEECTTSSEEEEEECSSSCEEEEEECEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHH
T ss_pred CCccccccHHHHhcCceEEEEeCCcEEEEEEEeccCCCceeccccceEEEEeCCCCcEEEEEEEhhhcccchHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeee
Q 042625 1851 KTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNI 1930 (2346)
Q Consensus 1851 ktAeEvaalirSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNl 1930 (2346)
||||||||||||||+||||||||||||||+|||||||+|||||+||||||+|||+|+||++|++|+|++||||||++|||
T Consensus 81 KtAEEv~alirslP~eEqPkqiIVtrk~mldpLevhllDfPnI~Ik~sel~lpF~a~mki~k~~d~vl~atep~m~lfnl 160 (257)
T 3e9l_A 81 KTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNL 160 (257)
T ss_dssp HHHHHHHHHHHHSCGGGSCSEEEESSGGGHHHHHHHTTTCTTCEEEEESSCCCGGGGGGSHHHHHHHHHCSSCEEEEEET
T ss_pred HHHHHHHHHHHhCCHhhCCceEEEechHhhhHHHHHhhhCCCceeeccccccCHHHHhhhHHHHHHHHhccCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhccChhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHhhhcCCcC
Q 042625 1931 YDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNT 2010 (2346)
Q Consensus 1931 YDdWL~siSsyTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~dy~kk~nV~~ 2010 (2346)
|||||+|||||||||||+|||||||||++|||+||+||++++|++||+||+|||||||+||++||||||+|||||+|||+
T Consensus 161 YDdWL~siS~~TAFsRLiLiLR~l~vn~~ktk~IL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkDLIl~dy~k~~nv~~ 240 (257)
T 3e9l_A 161 YDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNV 240 (257)
T ss_dssp TTTGGGTSCHHHHHHHHHHHHHHHHHCHHHHHHHTCCSTTCCCCTTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred ehhhhhccccHHHHHHHHHHHHHcccCHHHhhHhhcCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccchhhhhhceecccc
Q 042625 2011 SALTQSEIRDIILGAEI 2027 (2346)
Q Consensus 2011 ~sLtqsEirDIILG~ei 2027 (2346)
+||||||||||||||+|
T Consensus 241 ~sLTQsEIrDIILG~~i 257 (257)
T 3e9l_A 241 ASLTQSEIRDIILGMEI 257 (257)
T ss_dssp GGCCHHHHHHHHHTCCC
T ss_pred ccccHHHHHHhhccccC
Confidence 99999999999999986
No 4
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A
Probab=100.00 E-value=4.3e-108 Score=880.44 Aligned_cols=222 Identities=91% Similarity=1.444 Sum_probs=218.7
Q ss_pred hhhccCceEEEEeccceEEEEeeeeccCcccccccceeEEEEecCCCceEEEEEeeccccccchhhhhhhhhhHHHHHHH
Q 042625 1780 GEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL 1859 (2346)
Q Consensus 1780 ~eLF~n~~~wfVDDtnvYRvtihkt~eGn~~tKpiNG~ififNP~TGqLflKiihtsvwagqKRl~QlakwktAeEvaal 1859 (2346)
||||+||++||||||||||||+|||||||++|||||||||||||+||||||||||||||||||||+||||||||||||||
T Consensus 1 ~eLF~n~~~wfvDDtnvYrvt~h~T~eGn~~tkpiNG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKwKtAEEv~al 80 (222)
T 3enb_A 1 GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAAL 80 (222)
T ss_dssp --CCSSSCEEEEECTTSSEEEEEECTTSCEEEEEECEEEEEECTTTCEEEEEEECGGGCCSCSCHHHHHHHHHHHHHHHH
T ss_pred CccccCceEEEEeCCcEEEEEEEeccCCCceeecccceEEEEeCCCCcEEEEEEEehhcccchHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccCCceEEEecccccchhhhhcccCCceeeeccccccchhhhhhhhccccchhccCCCceEEeeehhhHhhccC
Q 042625 1860 VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSIS 1939 (2346)
Q Consensus 1860 irSLP~eEqPkqiIVtrk~mldplevhlldfPnI~ik~sel~lpF~a~~ki~k~~dlil~atepqm~lfNlYDdWL~siS 1939 (2346)
|||||+||||||||||||||+|||||||+|||||+||||||+|||+|+||++|++|+|++||||||++||||||||+|||
T Consensus 81 irslP~eEqPkqiIVtrk~mldplevhlldfPnI~Ik~sel~lpF~a~mki~k~~d~vl~atep~m~lfnlYDdWL~siS 160 (222)
T 3enb_A 81 IRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTIS 160 (222)
T ss_dssp HHHSCGGGSCSEEEESSGGGHHHHHHHTTTCTTCEEEECCCCCCGGGGGGSHHHHHHHHHCSSCEEEEEETTTTGGGTSC
T ss_pred HHhCCHhhCCceEEEechHhhhHHHHHhhhCCCceeeccccccCHHHHhhhHHHHHHHHhccCCcEEEEEeehhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhccChHHhhhccCCCCcccccccccCCCCChhhHHHHHHHHHHHHHHH
Q 042625 1940 SYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSD 2001 (2346)
Q Consensus 1940 syTaFsRliLiLR~l~vn~~k~k~il~p~~~~~~~~~h~WPslsdeeWi~vE~~LkDlIl~d 2001 (2346)
||||||||+|||||||||++|||+||+||++++|++||+||+|||||||+||++||||||+|
T Consensus 161 ~~TAFsRLiLiLR~l~vn~~ktk~IL~p~~~~~~~~~h~WPslsd~eWi~vEi~LkDLIl~d 222 (222)
T 3enb_A 161 SYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILAD 222 (222)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHTCCSTTCCCCTTCSSCCCCHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHccCCHHHhhhhccCCCCeeccccccCCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 5
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=100.00 E-value=7e-98 Score=838.78 Aligned_cols=272 Identities=68% Similarity=1.255 Sum_probs=243.6
Q ss_pred ccccccchhhhHhHhhhccccccccceeeccccccccccEEEechhHHHHHHHhccccceEEEEEeccCCCCCCCceeEE
Q 042625 2075 QAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIR 2154 (2346)
Q Consensus 2075 ~~~f~skt~WR~Rai~~~~L~lr~~~i~v~~~d~~e~~~tyVLPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIr 2154 (2346)
||+|+||||||+|||++++|+||++||||+++|+.+++++||||+||+||||+|||+||||||||||++|+||++||||+
T Consensus 1 q~~F~SktdWR~Raisa~nL~lR~~~iyv~s~d~~~~~~t~vlPknllkkFi~IADlrTq~~G~LyG~s~~d~~~vkeI~ 80 (273)
T 2p8r_A 1 TASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYTYILPKNILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIR 80 (273)
T ss_dssp -----CHHHHHHHHHHHTTGGGGGGSEEECCTTCCSSSCEEEEEHHHHHHHHHTSCSSSCCEEEEEEECCTTCTTEEEEE
T ss_pred CCcccccchhHHhhhhccccccccccEEECCcccCCCccEEEecHHHHHHHHHHhhccceEEEEEeccCCCCCCCeEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccccceeeCCCCCCCcccccCCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCee
Q 042625 2155 CIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSC 2234 (2346)
Q Consensus 2155 cIVIvPQlGt~~tVelp~~lP~hd~LeDLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~ 2234 (2346)
|||||||.||+++|++|+++|.|+||+|||+||||||||+|+|||||+||+|||+++++|+.||++++|+||||||||||
T Consensus 81 ~ivipPQ~gt~~sv~~~~~~p~~~~l~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftpgs~ 160 (273)
T 2p8r_A 81 CIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSV 160 (273)
T ss_dssp EEECCSBEECSSCEECCSSCCCCTTTTTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEETTEE
T ss_pred EEEECCccCCCceEECCCcCcchhhhccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999789999999999999
Q ss_pred EEEEEecCcchhcccccccCCCCCCCCCCCCcceEeeEEeecccceEEEeeCCCCccccccccccCCCceEEEEECCccc
Q 042625 2235 SLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPRE 2314 (2346)
Q Consensus 2235 SLsAy~LT~eG~eWG~~Nk~~~~~~~g~~~~~~~~~q~llsd~~~g~flvP~~~~WNy~f~~~~~~~~~~y~~~~~~P~~ 2314 (2346)
|++||+||++||+||++|+|...+|+||.|+|+|||||||||||+||||||++|+|||+|||++|+++|+|+|+||+|++
T Consensus 161 sl~af~LT~~G~~Wg~~n~d~~~~~~Gf~p~~~ek~qllLSdr~~GfflVP~~~~WNY~f~g~~~~~~~~Y~lkl~~P~~ 240 (273)
T 2p8r_A 161 SLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKE 240 (273)
T ss_dssp EEEEEEECHHHHHHHHHCCCCSSCCTTCCGGGEEEEEEEEECSSCCEEEEETTSCCBCTTCGGGCCTTCCCCEEECCCCC
T ss_pred eeEEEEcChHHhhhhhhccccccCCCCCCcchhhheeeeeecccceEEECCCCCcccccccccccCCCceeeEEeCCchh
Confidence 99999999999999999999876799999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcccccccccccccc-cccCCcCcCCC
Q 042625 2315 YYHEDHRPTHFLEFSNLEEGE-MAEGDREDTFS 2346 (2346)
Q Consensus 2315 fy~~~hr~~hf~~f~~~~~~~-~~~~~~~d~~~ 2346 (2346)
||||+|||.||++|+++++++ +++||+||+|+
T Consensus 241 FY~e~HRp~HF~~F~~~~~~~~~~~~d~ed~f~ 273 (273)
T 2p8r_A 241 YYHEDHKPVHFHNFKAFDDPLGTGSADREDAFA 273 (273)
T ss_dssp TTCGGGSCSCC----------------------
T ss_pred hcccccchHHhhhHhhhcccccccccccccccC
Confidence 999999999999999999764 35799999996
No 6
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-92 Score=782.90 Aligned_cols=251 Identities=42% Similarity=0.794 Sum_probs=242.0
Q ss_pred cccccchhhhHhHhhhccccccccceeeccccccccccEEEechhHHHHHHHhccccceEEEEEeccCCCCCCCceeEEE
Q 042625 2076 AAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRC 2155 (2346)
Q Consensus 2076 ~~f~skt~WR~Rai~~~~L~lr~~~i~v~~~d~~e~~~tyVLPKNLLKKFI~ISDlRTQIaGyLYG~SP~DNp~VKEIrc 2155 (2346)
++|+||||||+|||++++|+||++||||+++|++|++++||||+||++|||+|||+||||||||||++|+||++||||+|
T Consensus 1 ~~F~SktdWR~Rais~~~L~lR~~~iyv~s~d~~~~~~t~vlPknLlkkFi~IAD~~Tq~cG~LyG~~~~d~~~v~eI~~ 80 (254)
T 2og4_A 1 GAMSSKNEWRKSAIANTLLYLRLKNIYVSADDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKT 80 (254)
T ss_dssp ----CHHHHHHHHHHHTTGGGGGGSEEECCCCCCTTSCEEEEEHHHHHHHHHTSCSSSCCEEEEEEEECSSCTTEEEEEE
T ss_pred CcccccchhHHhhhhccccccccccEEECCcccCCCCcEEEcCHHHHHHHHHHhhccceEEEEEEccCCCCCCCeEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccceeeCCCCCCCccc--ccCCCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCe
Q 042625 2156 IAMPPQWGTHQQVHLPSALPEHDF--LNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGS 2233 (2346)
Q Consensus 2156 IVIvPQlGt~~tVelp~~lP~hd~--LeDLE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS 2233 (2346)
||||||.||+++|++|+++|.|+| ++|||+||||||||+|+|||||+||+|||+++.+ ||+ ++|+|||||||||
T Consensus 81 ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~---~~~-eaIaIvcsftpgs 156 (254)
T 2og4_A 81 VVLVPQLGHVGSVQISNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFAD---KKR-DCIDISIFSTPGS 156 (254)
T ss_dssp EECCCEEEETTEEEECCCCCCTTSTTCTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTT---TCT-TCEEEEEEEETTE
T ss_pred EEECCccCCCceEECCCcCccccchhhcCCEecceEeeCCCCCcccCHHHHHHHHHHHHh---cCC-CeEEEEEecCCCC
Confidence 999999999999999999999999 8999999999999999999999999999999998 888 6899999999999
Q ss_pred eEEEEEecCcchhcccccccCCC-CCCCCCCCCcceEeeEEeecccceEEEeeCCCCccccccccccCCCceEEEEECCc
Q 042625 2234 CSLTAYKLTPSGYEWGRVNKDTG-SNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTP 2312 (2346)
Q Consensus 2234 ~SLsAy~LT~eG~eWG~~Nk~~~-~~~~g~~~~~~~~~q~llsd~~~g~flvP~~~~WNy~f~~~~~~~~~~y~~~~~~P 2312 (2346)
||++||+||++||+||++|+|.. .+|+||+|+|+||+||||||||+||||||++|+|||+|||++|+++|+|+|+||+|
T Consensus 157 ~sl~af~LT~~G~~Wg~~n~d~~~~~~~g~~~~~~ek~qlllSdr~~G~flvP~~~~WNY~f~g~~~~~~~~y~lkl~~P 236 (254)
T 2og4_A 157 VSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIP 236 (254)
T ss_dssp EEEEEEEECHHHHHHHHTCCSCCSSCCTTCCGGGEEEEEEEEESSSCCEEEEETTSCCBCTTCGGGCCTTCCCCEEECCC
T ss_pred ceeEEEEcChhhhhhhhhcccccccCCCCCCccccceeeEEeecceeeEEECCCCCcccccccccccCCCceeeEEeCCc
Confidence 99999999999999999999974 55999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCccccccccc
Q 042625 2313 REYYHEDHRPTHFLEFSN 2330 (2346)
Q Consensus 2313 ~~fy~~~hr~~hf~~f~~ 2330 (2346)
++||||+|||.||++|++
T Consensus 237 ~~Fy~e~HRp~HF~~F~~ 254 (254)
T 2og4_A 237 LEFYNEMHRPVHFLQFSE 254 (254)
T ss_dssp CCTTCGGGSCCCCCCCC-
T ss_pred hhhcccccchhhhhhccC
Confidence 999999999999999974
No 7
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.91 E-value=5.3e-25 Score=243.11 Aligned_cols=151 Identities=22% Similarity=0.276 Sum_probs=132.3
Q ss_pred cccEEEechhHHHHHHHhccccc----eEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCccc--ccCCC
Q 042625 2111 TGYTYIMPKNILKKFICIADLRT----QISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDF--LNDLE 2184 (2346)
Q Consensus 2111 ~~~tyVLPKNLLKKFI~ISDlRT----QIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~--LeDLE 2184 (2346)
+-++++||+|++++|+++||.+| +|||+|||+.+ .+++||.|++++||.|+.++|++++..+.+++ ..||+
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~---~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~ 116 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLM---RNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLI 116 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEE---TTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCE
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcC---CCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCE
Confidence 45889999999999999999985 89999999974 25789999999999999999999887665665 49999
Q ss_pred cceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecCcchhcccccccCCCCCCCCCCC
Q 042625 2185 PLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLP 2264 (2346)
Q Consensus 2185 ~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT~eG~eWG~~Nk~~~~~~~g~~~ 2264 (2346)
+|||+||||++.++||+.|++||++++.+++ ++|+|+|++. +++++||+||++|++|+++.++..-.|.+..|
T Consensus 117 ~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~-----~~I~IVvsP~--~~~lgaFrLtp~G~~~~~~c~~~~fhph~~~~ 189 (211)
T 3rzv_A 117 TLGWIHTHPTQTAFLSSVDLHTHCSYQMMLP-----ESVAIVCSPK--FQETGFFKLTDHGLEEISSCRQKGFHPHSKDP 189 (211)
T ss_dssp EEEEEEECTTSCSCCCHHHHHHHHHHHHHCT-----TCEEEEEETT--TTEEEEEEECHHHHHHHHHCCCCSSCCCCCSS
T ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCC--CCeeeEEEeccchhhhhhccccCCcccCCCCC
Confidence 9999999999999999999999999999853 4799999954 67999999999999999999987666777666
Q ss_pred CcceEee
Q 042625 2265 THYEKVQ 2271 (2346)
Q Consensus 2265 ~~~~~~q 2271 (2346)
..++.+.
T Consensus 190 ~~~~~~~ 196 (211)
T 3rzv_A 190 PLFCSCS 196 (211)
T ss_dssp CSEEECS
T ss_pred CceEEee
Confidence 6666654
No 8
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.88 E-value=1.2e-23 Score=226.68 Aligned_cols=150 Identities=23% Similarity=0.338 Sum_probs=133.6
Q ss_pred ccEEEechhHHHHHHHhcccc----ceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc--cCCCc
Q 042625 2112 GYTYIMPKNILKKFICIADLR----TQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL--NDLEP 2185 (2346)
Q Consensus 2112 ~~tyVLPKNLLKKFI~ISDlR----TQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L--eDLE~ 2185 (2346)
-++++||+|+++||+++|+.+ ++|||+|+|+.+.| +++|+|++++||.|++++|++++..+.++++ .+|++
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~---~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~ 84 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN---EFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLT 84 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT---EEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC---CeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEE
Confidence 478999999999999999997 58999999997543 6899999999999999999998766677777 89999
Q ss_pred ceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEecCcchhcccccccCCCCCCCCCCCC
Q 042625 2186 LGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPT 2265 (2346)
Q Consensus 2186 LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~LT~eG~eWG~~Nk~~~~~~~g~~~~ 2265 (2346)
|||+||||+..+++|+.|+.||+++++. ++ ++|.|+|+++++ .++||+||++|++|+++.++..-.|.+..|.
T Consensus 85 vGwyHSHP~~~~~pS~~Dv~tq~~yq~~----~~-~~v~iIvsp~~~--~~~afrl~~~g~~~~~~~~~~~f~p~~~~~~ 157 (178)
T 2znr_A 85 LGWIHTHPTQTAFLSSVDLHTHCSYQLM----LP-EAIAIVCSPKHK--DTGIFRLTNAGMLEVSACKKKGFHPHTKEPR 157 (178)
T ss_dssp EEEEEECSSSCSCCCHHHHHHHHHHHHH----CT-TCEEEEEEGGGT--EEEEEEECHHHHHHHHHCCCCSSCCCCCSSC
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhh----cC-CEEEEEEcCCCC--cceEEEEECCcEeeecccCCCCcccCCCCCC
Confidence 9999999999999999999999999985 34 489999999996 3899999999999999999877777777777
Q ss_pred cceEee
Q 042625 2266 HYEKVQ 2271 (2346)
Q Consensus 2266 ~~~~~q 2271 (2346)
.++++.
T Consensus 158 ~~~~~~ 163 (178)
T 2znr_A 158 LFSICK 163 (178)
T ss_dssp SEEECS
T ss_pred ceEEec
Confidence 888774
No 9
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.2e-06 Score=99.86 Aligned_cols=127 Identities=19% Similarity=0.272 Sum_probs=91.9
Q ss_pred cEEEechhHHHHHHHhc--cccceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc-------cCC
Q 042625 2113 YTYIMPKNILKKFICIA--DLRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL-------NDL 2183 (2346)
Q Consensus 2113 ~tyVLPKNLLKKFI~IS--DlRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L-------eDL 2183 (2346)
.+..|..-.+-|.+.=| ...+.|+|+|.|.. .|+ ..-||....-+||-|+...|+.-...-..+.+ .++
T Consensus 25 ~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~-~~~-~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~~ 102 (306)
T 4b4t_V 25 ETVYISSIALLKMLKHGRAGVPMEVMGLMLGEF-VDD-YTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQ 102 (306)
T ss_dssp CEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEE-ETT-TEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCCC
T ss_pred CEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEE-cCC-eEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCCc
Confidence 34445444444444333 34677999999962 233 33477777778999999998753211111122 568
Q ss_pred CcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeec---CCeeEEEEEecCcchh
Q 042625 2184 EPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFT---PGSCSLTAYKLTPSGY 2246 (2346)
Q Consensus 2184 E~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itcsft---PGS~SLsAy~LT~eG~ 2246 (2346)
.++||-||+|.-.|++|..||.||..++..+ + .+|.|+|... .|.+++.||++++.|+
T Consensus 103 ~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~----~-~~V~lV~Dp~~t~~G~~~i~Afr~~~~~~ 163 (306)
T 4b4t_V 103 MVVGWYHSHPGFGCWLSSVDVNTQKSFEQLN----S-RAVAVVVDPIQSVKGKVVIDAFRLIDTGA 163 (306)
T ss_dssp CCSEEEEECCSSSCCCCHHHHHHHHHHHHHC----S-SCEEEEECSSSSSSCSSCEEEEECCHHHH
T ss_pred ceeeEEecCCCCCCcCCHHHHHHHHHHHhcC----C-CcEEEEECCCcCCCCceeeeEEEecCccc
Confidence 8999999999999999999999999998864 2 4899999853 5889999999999997
No 10
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=97.55 E-value=0.00014 Score=76.67 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=75.8
Q ss_pred EechhHHHHHHHhccc--cceEEEEEeccCCCCCCCceeEEEEEcCCcc--cccc-eeeCCCCCCCcccc--------cC
Q 042625 2116 IMPKNILKKFICIADL--RTQISGYLYGISPPDNPQVKEIRCIAMPPQW--GTHQ-QVHLPSALPEHDFL--------ND 2182 (2346)
Q Consensus 2116 VLPKNLLKKFI~ISDl--RTQIaGyLYG~SP~DNp~VKEIrcIVIvPQl--Gt~~-tVelp~~lP~hd~L--------eD 2182 (2346)
.||+.++.+++.-|-. ...+||+|.|+.-.++. .-|..++-.|.. ++.. .+++ .|. +++ .+
T Consensus 2 ~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~--~~v~~~~p~~n~~~~~~~~~f~~---dp~-~~~~~~~~~~~~g 75 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGD--NRVAALHRATNRRSEQRTRRYEL---TAD-DYRAADAAAQEQG 75 (153)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSC--EEEEEEEESSCCCCCCCSCCSSC---CCC-SHHHHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCC--eEEEEEEECCCCCCCCCCcEEEE---CHH-HHHHHHHHHHHCC
Confidence 4789999999877654 46799999998532222 224444445554 3322 2222 222 222 47
Q ss_pred CCcceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCe-eEEEEEecCcc
Q 042625 2183 LEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGS-CSLTAYKLTPS 2244 (2346)
Q Consensus 2183 LE~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS-~SLsAy~LT~e 2244 (2346)
++++||.|+||+..+.+|..|+.+. +++ ..+.+.|+...|. ..+.||++|.+
T Consensus 76 ~~ivG~yHSHP~~~~~PS~~D~~~~---------~~~-~~~~lIvs~~~~~~~~~~af~~~~~ 128 (153)
T 2kcq_A 76 LDVVGVYHSHPDHPARPSATDLEEA---------TFP-GFTYVIVSVRDGAPEALTAWALAPD 128 (153)
T ss_dssp CEEEEEEEECSSSSSSCCHHHHHTC---------CCT-TSEEEEEEEETTEEEEEEEEEECTT
T ss_pred CeEEEEEeCCCCCCCCCCHHHHHhh---------hcC-CCeEEEEECCCCCccEEEEEEEeCC
Confidence 7999999999999999999997531 233 3678888876675 47999999744
No 11
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=97.24 E-value=0.00023 Score=74.52 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=75.8
Q ss_pred EEechhHHHHHHHhccc--cceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc--------cCCC
Q 042625 2115 YIMPKNILKKFICIADL--RTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL--------NDLE 2184 (2346)
Q Consensus 2115 yVLPKNLLKKFI~ISDl--RTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L--------eDLE 2184 (2346)
+.||+.++.+++.-|-. ...+||+|.|+.-.+. ..|..++..|...+..+ .+-. -|. +++ .+++
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~---~~v~~~~p~~n~~~~~~-~f~~-dp~-~~~~~~~~~~~~g~~ 75 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDD---RWVERVYPLNNLDQSPE-HFSM-DPR-EQLTAVKDMRKNGWV 75 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTE---EEEEEEECCCCCSCCSS-SCCC-CHH-HHHHHHHHHHHHTCE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCC---cEEEEEEECCCcCCCCc-eEEE-CHH-HHHHHHHHHHHCCCE
Confidence 56899999999987764 4679999999853332 23555566664443322 1211 121 211 5789
Q ss_pred cceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecC-CeeEEEEEecCc
Q 042625 2185 PLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTP-GSCSLTAYKLTP 2243 (2346)
Q Consensus 2185 ~LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftP-GS~SLsAy~LT~ 2243 (2346)
++||.|+||+..+..|..|+.+.. +.+ .+.+.|+... +..++.||+++.
T Consensus 76 ivG~~HSHP~~~~~PS~~D~~~~~--------~~~--~~~lIvs~~~~~~~~~~af~~~~ 125 (146)
T 2kks_A 76 MLGNFHSHPATPARPSAEDKRLAF--------DPS--LSYLIISLAEPQKPVCKSFLIKK 125 (146)
T ss_dssp EEEEEEEESSSCSSCCHHHHTTCC--------SSS--CEEEEEECSCSSSCEEEEEEECS
T ss_pred EEEEEeCCCcCCCCCCHHHHHhhh--------cCC--CeEEEEEccCCCceEEEEEEEeC
Confidence 999999999999999999987521 222 4677777654 457899999953
No 12
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=96.56 E-value=0.0041 Score=63.54 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=66.4
Q ss_pred EEechhHHHHHHHhcccc--ceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc-cCCCcceEEee
Q 042625 2115 YIMPKNILKKFICIADLR--TQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL-NDLEPLGWMHT 2191 (2346)
Q Consensus 2115 yVLPKNLLKKFI~ISDlR--TQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L-eDLE~LGWIHT 2191 (2346)
..||+.++.++++-|--. -.+||+|.|+.. . |.-+...|..++..+..+-. +.. .+++++||.|+
T Consensus 4 v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~----~---v~~~~~~p~~~~~~~~~f~~-----~~~~~~~~ivG~~HS 71 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSAHPDEFIALLSGSKD----V---MDELIFLPFVSGSVSAVIHL-----DMLPIGMKVFGTVHS 71 (124)
T ss_dssp CEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----E---ECEEEECCCCC------------------CCCEEEEEEEE
T ss_pred EEEcHHHHHHHHHHHHhcCCCeeEEEEecccC----E---EEEEEECCCCCCCcCceeee-----eeccCCCEEEEEEEE
Confidence 568999999998776433 469999999852 2 34444444665543222210 111 67999999999
Q ss_pred CCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecCCeeEEEEEec
Q 042625 2192 QPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKL 2241 (2346)
Q Consensus 2192 Qp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftPGS~SLsAy~L 2241 (2346)
||+..+..|..|+.+.+. .+ .+.+.|+...+.-++.+|..
T Consensus 72 HP~~~~~PS~~D~~~~~~--------~~--~~~lIvs~~~~~~~~~~f~~ 111 (124)
T 1oi0_A 72 HPSPSCRPSEEDLSLFTR--------FG--KYHIIVCYPYDENSWKCYNR 111 (124)
T ss_dssp ESSSCCSCCHHHHHHHHH--------SC--SEEEEEETTCCTTCEEEEET
T ss_pred CcCCCCccCHHHHHhhhc--------CC--CEEEEEEccCCCceEEEEec
Confidence 999999999999987542 12 35666664332346777766
No 13
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=94.47 E-value=0.061 Score=58.32 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=66.4
Q ss_pred ccceEEEEEeccCCCCCCCceeEEEEEcCCcccccce---eeCCCCCCCcccc-----------cCCCcceEEeeCCCCC
Q 042625 2131 LRTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQ---VHLPSALPEHDFL-----------NDLEPLGWMHTQPNEL 2196 (2346)
Q Consensus 2131 lRTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~t---Velp~~lP~hd~L-----------eDLE~LGWIHTQp~El 2196 (2346)
...+|+|.|.|... ....||.-..-.|+-++... +.+ .++|+ .++.++||=||+|.-
T Consensus 32 ~~~~V~G~LLG~~~---~~~v~V~~~f~lp~~~~~~~~~~~~~-----d~ey~~~m~~~~~~v~~~~~iVGWY~s~~~~- 102 (187)
T 2o95_A 32 NQKRVVGVLLGSWQ---KKVLDVSNSFAVPFDEDDKDDSVWFL-----DHDYLENMYGMFKKVNARERIVGWYHTGPKL- 102 (187)
T ss_dssp CCSCCEEEEEEEES---SSEEEEEEEEEECEEECSSCTTSEEE-----CHHHHHHHHHHHHTTSSSCEEEEEEECCSSC-
T ss_pred CCcEEEEEEEEEEc---CCEEEEEEEEEeCCcccCCCcchhhc-----CHHHHHHHHHHHHHhCCCCCEEEEEcCCCcC-
Confidence 45679999999753 23556765555555554432 111 11222 488999999998753
Q ss_pred CCCCHHhHHHHHHHHhhcCCCCCCcEEEEEEeecC--CeeEEEEEecCcchh
Q 042625 2197 PQLSPQDLTSHARILENNKQWDGEKCIILTCSFTP--GSCSLTAYKLTPSGY 2246 (2346)
Q Consensus 2197 ~~LSp~Dv~THAkl~~~n~~wd~~~sI~ItcsftP--GS~SLsAy~LT~eG~ 2246 (2346)
+..|+.+|..++..+ + ++|.+++.... +.+.+.||++++++.
T Consensus 103 ---s~~d~~i~~~~~~~~----~-~~v~Livd~~~~~~~l~i~ay~~~~~~~ 146 (187)
T 2o95_A 103 ---HKNDIAINELMKRYC----P-NSVLVIIDVKPKDLGLPTEAYISVEEVH 146 (187)
T ss_dssp ---CTTHHHHHHHHTTTC----T-TCEEEEECCCTTC-CCSEEEEEEEEECC
T ss_pred ---CcccHHHHHHHHhcC----C-CCEEEEECCCCCCCCcCeEEEEEechhc
Confidence 688998887775543 3 47888888755 358899999998875
No 14
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=85.29 E-value=0.48 Score=37.71 Aligned_cols=22 Identities=36% Similarity=0.782 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 042625 11 PPLAPPGTSGAVPIPPPPSQPS 32 (2346)
Q Consensus 11 ~~~~pp~~~~~~p~~~~p~~~s 32 (2346)
||||.||-++.|||||.|.-||
T Consensus 3 PPPplPg~~giPpPpplPg~~s 24 (26)
T 2v8f_C 3 PPPPLPGVASIPPPPPLPGXXX 24 (26)
T ss_pred CCCCCCCCCCCCCCCCCCCccc
Confidence 4444555555444444444333
No 15
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=83.06 E-value=1.1 Score=47.47 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=53.5
Q ss_pred cceEEEEEeccCCCCCCCceeEEEEEcCCcccccceeeCCCCCCCcccc-----------cCCCcceEEeeCCCCCCCCC
Q 042625 2132 RTQISGYLYGISPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFL-----------NDLEPLGWMHTQPNELPQLS 2200 (2346)
Q Consensus 2132 RTQIaGyLYG~SP~DNp~VKEIrcIVIvPQlGt~~tVelp~~lP~hd~L-----------eDLE~LGWIHTQp~El~~LS 2200 (2346)
..+|.|.|.|.. +...-||.--.-+|+-++...+.+ .++|. .+..++||=||.| .++
T Consensus 32 ~~~V~G~LLG~~---~~~~veV~nsF~~p~~~~~~~~~~-----d~~y~~~m~~~~k~v~~~e~iVGWY~s~~----~~~ 99 (141)
T 4e0q_A 32 PRQVYGALIGKQ---KGRNIEIMNSFELKTDVIGDETVI-----NKDYYNKKEQQYKQVFSDLDFIGWYTTGD----NPT 99 (141)
T ss_dssp CCEEEEEEEEEE---ETTEEEEEEEEECCEEEETTEEEE-----CHHHHHHHHHHHHHHSTTCEEEEEEEEEC-------
T ss_pred CcEEEEEEEEEE---eCCEEEEEEEEEecccCCCCceee-----cHHHHHHHHHHHHHhCCCccEEEEEeCCC----CCC
Confidence 457999999985 334557765555566666555433 23433 5789999999986 478
Q ss_pred HHhHHHHHHHHhhcCCCCCCcEEEEEEeecCC
Q 042625 2201 PQDLTSHARILENNKQWDGEKCIILTCSFTPG 2232 (2346)
Q Consensus 2201 p~Dv~THAkl~~~n~~wd~~~sI~ItcsftPG 2232 (2346)
+.|+.+|..+...+ + ++|.+++...+.
T Consensus 100 ~~d~~i~~~~~~~~----~-~pV~L~~Dp~~~ 126 (141)
T 4e0q_A 100 ADDIKIQRQIAAIN----E-CPIMLQLNPLSR 126 (141)
T ss_dssp ----CHHHHHHHTT----C-CCEEEEESCSCC
T ss_pred cchHHHHHHHHHHC----C-CCEEEEECCCcc
Confidence 99999999998764 3 478888887663
No 16
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=73.44 E-value=1.8 Score=34.52 Aligned_cols=22 Identities=41% Similarity=0.842 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCcc
Q 042625 13 LAPPGTSGAVPIPPPPSQPSYT 34 (2346)
Q Consensus 13 ~~pp~~~~~~p~~~~p~~~s~~ 34 (2346)
||||+.|+-.-+||||++|+.+
T Consensus 2 PPPPplPg~~giPpPpplPg~~ 23 (26)
T 2v8f_C 2 PPPPPLPGVASIPPPPPLPGXX 23 (26)
T ss_pred cCCCCCCCCCCCCCCCCCCCcc
Confidence 6777778888899999998864
No 17
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.79 E-value=8.1 Score=46.00 Aligned_cols=111 Identities=16% Similarity=0.296 Sum_probs=67.5
Q ss_pred hHHHHHHHh-ccccceEEEEEeccCCCCCCCceeEE-EEEcCCcc-cccceeeCCCCCCCcccc-----------cCCCc
Q 042625 2120 NILKKFICI-ADLRTQISGYLYGISPPDNPQVKEIR-CIAMPPQW-GTHQQVHLPSALPEHDFL-----------NDLEP 2185 (2346)
Q Consensus 2120 NLLKKFI~I-SDlRTQIaGyLYG~SP~DNp~VKEIr-cIVIvPQl-Gt~~tVelp~~lP~hd~L-----------eDLE~ 2185 (2346)
||++++... +....+|.|.|.|.- +...-||. |+.+|-.- +....+.+ -.++|+ .++.+
T Consensus 17 ~I~dH~~R~~~~~~~rViG~LLG~~---~~~~veV~nsF~~p~~e~~~~~~~~~----~D~~y~~~m~~~~kkV~~~e~i 89 (338)
T 4b4t_U 17 SALDHYERTQTKENKRCVGVILGDA---NSSTIRVTNSFALPFEEDEKNSDVWF----LDHNYIENMNEMCKKINAKEKL 89 (338)
T ss_dssp HHHHHHHHHTTTCCSCCEEEEEEEE---CSSEEEEEEEEECCEEECSSSTTCEE----ECHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHhhcCCCCeEEEEEEeEE---cCCEEEEEEEEEeccccCCCCCcccc----ccHHHHHHHHHHHhhcCccCCE
Confidence 667777763 344457899999963 34455776 55554321 11111111 123333 57799
Q ss_pred ceEEeeCCCCCCCCCHHhHHHHHHHHhhcCCCCCCcEEEEEE--eecCCeeEEEEEecCcch
Q 042625 2186 LGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTC--SFTPGSCSLTAYKLTPSG 2245 (2346)
Q Consensus 2186 LGWIHTQp~El~~LSp~Dv~THAkl~~~n~~wd~~~sI~Itc--sftPGS~SLsAy~LT~eG 2245 (2346)
+||=||.+ .+++.|+..|.-+...+. + ..|.+++ +..-|...+.||.-.+++
T Consensus 90 VGWY~tg~----~~~~~d~~Ih~~~~~~~~---~-~pi~l~~d~~~~~~~lpi~aY~s~~~~ 143 (338)
T 4b4t_U 90 IGWYHSGP----KLRASDLKINELFKKYTQ---N-NPLLLIVDVKQQGVGLPTDAYVAIEQV 143 (338)
T ss_dssp EEEEECCS----SCCSTHHHHHHHHGGGCC---S-CCCEEEECSCCCSSSCSEEEEEEEEEC
T ss_pred EEEEecCC----CCCccHHHHHHHHHhccC---C-CcEEEEecCCCCCCCcceEEEEeehhc
Confidence 99999965 477999999988877542 1 2344444 355556778899766554
No 18
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=38.63 E-value=46 Score=42.43 Aligned_cols=110 Identities=14% Similarity=0.301 Sum_probs=82.3
Q ss_pred EEEEeehhHHHHHhhcHHHHHHHHHHH----hcchhhhhhhh--cCceEEEeeccccccccccccccchhHHHHHHHHHH
Q 042625 984 VVMLQTKFEKFFEKIDLTMLNRLLRLV----LDHNIADYVTA--KNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLV 1057 (2346)
Q Consensus 984 ~vl~et~l~~~~ekiD~tlLnrLLrli----~D~nladYits--KnNv~i~yKDM~~~N~~GlirGlqFssFv~q~y~li 1057 (2346)
.-++++.+.++|.+||...|-+.|+-. +|..+-.+|.+ ++++ +-..+.-+.+..|+-.|--.|+.+.-+|.--
T Consensus 245 ~yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~L-V~igGk~y~qekGTPQGGVISPLLANIYLhe 323 (596)
T 3kyl_A 245 IYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQF-VAFRRKIYKWNHGLLQGDPLSGCLCELYMAF 323 (596)
T ss_dssp CEEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEE-EESSSSEEEECSSSCBTCTTHHHHHHHHHHH
T ss_pred eEEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCe-EEECCEEEecCCcccCCcchhHHHHHHHHHH
Confidence 467899999999999999998888764 36665555543 2343 3345566778899999999999999999999
Q ss_pred HHHHHhcccccccccCCCCCCccceeeccccccccCcceEEEeecceEEEEEecChHHHHHHHH
Q 042625 1058 LDLLLLGLTRASEIAGPPHMPNEFITYWDTKVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQ 1121 (2346)
Q Consensus 1058 lDLliLG~~ra~e~ag~~~~pn~f~~f~~~~~e~~hpIrlY~Ry~dki~ilfrf~~~E~~~Li~ 1121 (2346)
+|-.+..- ++ ++ -.+.||.|...|+.+ +.++|...++
T Consensus 324 LDkel~~~----------------l~-kd---------~~LVRYADDFVIi~~-Ske~Aerfl~ 360 (596)
T 3kyl_A 324 MDRLYFSN----------------LD-KD---------AFIHRTVDDYFFCSP-HPHKVYDFEL 360 (596)
T ss_dssp HHHHHSTT----------------SC-TT---------SEEEECSSEEEEEES-CHHHHHHHHH
T ss_pred HHHHHHHh----------------hc-cC---------ceEEEEcCcEEEEEC-CHHHHHHHHH
Confidence 99877411 00 01 269999999999986 5667777765
No 19
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=24.19 E-value=16 Score=43.09 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.8
Q ss_pred hhHHHhhhcCC
Q 042625 461 LKCFVLNELHH 471 (2346)
Q Consensus 461 LK~yv~n~l~~ 471 (2346)
++..+...|+.
T Consensus 298 ~~~li~~~L~~ 308 (400)
T 1nxk_A 298 VKMLIRNLLKT 308 (400)
T ss_dssp HHHHHHTTSCS
T ss_pred HHHHHHHHCCC
Confidence 44444444443
No 20
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=20.87 E-value=21 Score=42.20 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=8.1
Q ss_pred hhhHhhhhhHHHhhh
Q 042625 454 RVSYQKLLKCFVLNE 468 (2346)
Q Consensus 454 rvSyqkLLK~yv~n~ 468 (2346)
|.|...+|++=.+..
T Consensus 313 Rpt~~eil~hp~~~~ 327 (400)
T 1nxk_A 313 RMTITEFMNHPWIMQ 327 (400)
T ss_dssp SCCHHHHHHSHHHHT
T ss_pred CcCHHHHhcCccccC
Confidence 446666666544443
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.68 E-value=21 Score=42.39 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=6.3
Q ss_pred HHhhhhHHhhhc
Q 042625 661 WLGNLLARQFEG 672 (2346)
Q Consensus 661 wL~nLlaRqfeG 672 (2346)
++++.|..+|-+
T Consensus 358 ~~~~~l~~~~~~ 369 (382)
T 2h6f_A 358 YIGRSLQSKHST 369 (382)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcc
Confidence 445555555443
No 22
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=20.24 E-value=83 Score=34.98 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=22.5
Q ss_pred cccCCChHHHHhhhcccCCCCccccccccc
Q 042625 76 QKEDMPPEHVRKIIRDHGDMSSKKYRHDKR 105 (2346)
Q Consensus 76 ~k~~mppehlrkii~~~~dms~~~~~~dkr 105 (2346)
-..++..|.|++++...|.+.+-+.-.+++
T Consensus 215 l~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 215 LPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 344777889999999889888777665553
No 23
>3fm7_C Dynein intermediate chain, cytosolic; cytoplasmic dynein, light chain tctex-1, tctex, light chain intermediate chain; 3.50A {Drosophila melanogaster}
Probab=20.07 E-value=28 Score=28.67 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred ccccccccccccc-Ccccccccccc
Q 042625 1336 LGMLSMGHILIPQ-SDLRYSQQTDV 1359 (2346)
Q Consensus 1336 LGMLS~ghilIp~-SDL~~skqtd~ 1359 (2346)
|||-++.++-||. +-..|||||-|
T Consensus 2 L~~s~v~~~nipPkE~V~YsKeTQT 26 (27)
T 3fm7_C 2 LSVYNVQATNIPPKETLVYTKQTQT 26 (27)
T ss_dssp EEECCCCCCEECCCCCCCEEEEEEC
T ss_pred cceeEEEEeccCCcceeEEeeeccc
Confidence 8999999999988 66889999864
Done!