Query 042627
Match_columns 237
No_of_seqs 315 out of 1588
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nk2_P Homeobox protein VND; h 99.8 1.9E-19 6.7E-24 131.8 6.0 64 87-150 6-71 (77)
2 2da3_A Alpha-fetoprotein enhan 99.8 1.7E-19 6E-24 132.4 5.6 62 86-147 13-76 (80)
3 2cue_A Paired box protein PAX6 99.8 3.6E-19 1.2E-23 131.2 7.2 62 87-148 4-67 (80)
4 2vi6_A Homeobox protein nanog; 99.8 8.8E-20 3E-24 128.2 3.6 59 89-147 2-62 (62)
5 2h1k_A IPF-1, pancreatic and d 99.8 2E-19 6.7E-24 126.9 5.2 59 89-147 2-62 (63)
6 2dmu_A Homeobox protein goosec 99.8 2.7E-19 9.4E-24 128.5 6.0 61 87-147 4-66 (70)
7 2dmt_A Homeobox protein BARH-l 99.8 3E-19 1E-23 131.6 6.3 61 87-147 14-76 (80)
8 1fjl_A Paired protein; DNA-bin 99.8 3.4E-19 1.2E-23 131.6 6.5 62 87-148 15-78 (81)
9 2dmq_A LIM/homeobox protein LH 99.8 2.8E-19 9.7E-24 131.5 5.8 62 87-148 4-67 (80)
10 2kt0_A Nanog, homeobox protein 99.8 2.6E-19 9E-24 132.8 5.6 62 86-147 18-81 (84)
11 2cra_A Homeobox protein HOX-B1 99.8 1.6E-19 5.5E-24 129.9 4.3 61 87-147 4-66 (70)
12 2da2_A Alpha-fetoprotein enhan 99.8 2.8E-19 9.7E-24 128.3 4.7 61 87-147 4-66 (70)
13 2dms_A Homeobox protein OTX2; 99.8 4.6E-19 1.6E-23 130.6 5.8 62 87-148 4-67 (80)
14 2e1o_A Homeobox protein PRH; D 99.8 5.9E-19 2E-23 126.9 6.2 60 88-147 5-66 (70)
15 2da1_A Alpha-fetoprotein enhan 99.8 4.1E-19 1.4E-23 127.5 5.3 61 87-147 4-66 (70)
16 1yz8_P Pituitary homeobox 2; D 99.8 4.1E-19 1.4E-23 127.1 4.4 61 88-148 1-63 (68)
17 1puf_A HOX-1.7, homeobox prote 99.8 1.7E-18 5.9E-23 126.7 7.7 62 87-148 10-73 (77)
18 2djn_A Homeobox protein DLX-5; 99.8 3.2E-19 1.1E-23 128.3 3.7 61 87-147 4-66 (70)
19 3a01_A Homeodomain-containing 99.8 7.8E-19 2.7E-23 133.3 6.0 64 87-150 14-79 (93)
20 2hdd_A Protein (engrailed home 99.7 6.6E-19 2.2E-23 123.3 4.9 56 90-145 3-60 (61)
21 1wh5_A ZF-HD homeobox family p 99.7 5.1E-19 1.7E-23 131.0 4.5 59 87-145 14-78 (80)
22 1ig7_A Homeotic protein MSX-1; 99.7 1.1E-18 3.7E-23 120.8 5.5 55 91-145 1-57 (58)
23 1zq3_P PRD-4, homeotic bicoid 99.7 1.1E-18 3.9E-23 124.8 5.8 59 90-148 2-62 (68)
24 2m0c_A Homeobox protein arista 99.7 1E-18 3.5E-23 126.6 5.5 63 86-148 5-69 (75)
25 1ahd_P Antennapedia protein mu 99.7 9.9E-19 3.4E-23 125.2 5.3 58 90-147 2-61 (68)
26 1b8i_A Ultrabithorax, protein 99.7 9.3E-19 3.2E-23 129.5 4.6 60 88-147 18-79 (81)
27 1jgg_A Segmentation protein EV 99.7 1.4E-18 4.9E-23 121.2 5.1 56 91-146 2-59 (60)
28 1bw5_A ISL-1HD, insulin gene e 99.7 7.8E-19 2.7E-23 124.8 3.8 59 89-147 2-62 (66)
29 2da4_A Hypothetical protein DK 99.7 9.2E-19 3.2E-23 128.9 4.3 61 87-147 5-71 (80)
30 2r5y_A Homeotic protein sex co 99.7 9.7E-19 3.3E-23 131.1 4.4 61 87-147 25-87 (88)
31 1uhs_A HOP, homeodomain only p 99.7 2E-18 6.7E-23 124.8 5.8 57 91-147 2-61 (72)
32 2l7z_A Homeobox protein HOX-A1 99.7 2.2E-18 7.5E-23 125.1 5.8 60 88-147 5-66 (73)
33 2k40_A Homeobox expressed in E 99.7 9.4E-19 3.2E-23 124.7 3.5 60 90-149 1-62 (67)
34 1ftt_A TTF-1 HD, thyroid trans 99.7 2.5E-18 8.5E-23 123.0 5.6 59 90-148 2-62 (68)
35 2hi3_A Homeodomain-only protei 99.7 3.6E-18 1.2E-22 123.8 6.1 58 90-147 2-62 (73)
36 1wh7_A ZF-HD homeobox family p 99.7 1.5E-18 5.2E-23 128.6 3.8 58 87-145 14-78 (80)
37 3rkq_A Homeobox protein NKX-2. 99.7 2.9E-18 1E-22 118.1 5.0 55 90-144 2-58 (58)
38 2da5_A Zinc fingers and homeob 99.7 3.9E-18 1.3E-22 124.4 5.3 58 91-148 8-67 (75)
39 2ecc_A Homeobox and leucine zi 99.7 4.3E-18 1.5E-22 125.2 5.5 57 92-148 5-63 (76)
40 3a03_A T-cell leukemia homeobo 99.7 4.5E-18 1.5E-22 117.3 4.9 52 95-146 2-55 (56)
41 3a02_A Homeobox protein arista 99.7 3.1E-18 1.1E-22 119.5 4.2 55 93-147 2-58 (60)
42 1b72_A Protein (homeobox prote 99.7 3.9E-18 1.3E-22 130.1 5.0 61 88-148 32-94 (97)
43 3nar_A ZHX1, zinc fingers and 99.7 3.6E-18 1.2E-22 130.2 4.4 61 88-148 23-85 (96)
44 1akh_A Protein (mating-type pr 99.7 3.4E-18 1.2E-22 119.4 3.9 57 88-144 3-61 (61)
45 2dn0_A Zinc fingers and homeob 99.7 4.8E-18 1.6E-22 124.1 4.4 59 90-148 8-68 (76)
46 2ly9_A Zinc fingers and homeob 99.7 6.3E-18 2.2E-22 122.5 4.8 60 89-148 5-66 (74)
47 2cuf_A FLJ21616 protein; homeo 99.7 1.2E-17 3.9E-22 127.0 6.3 62 87-148 4-82 (95)
48 1x2n_A Homeobox protein pknox1 99.7 1.6E-17 5.4E-22 120.2 6.4 61 87-147 4-69 (73)
49 1puf_B PRE-B-cell leukemia tra 99.7 1.2E-17 4E-22 120.9 5.0 61 90-150 1-66 (73)
50 1b72_B Protein (PBX1); homeodo 99.7 3.3E-17 1.1E-21 122.2 5.8 58 91-148 2-64 (87)
51 2ecb_A Zinc fingers and homeob 99.7 1.8E-17 6.2E-22 125.3 4.4 56 93-148 14-71 (89)
52 1du6_A PBX1, homeobox protein 99.7 1E-17 3.4E-22 118.2 2.5 57 89-145 2-63 (64)
53 2cqx_A LAG1 longevity assuranc 99.7 9.2E-18 3.1E-22 121.9 2.0 57 90-146 8-67 (72)
54 1au7_A Protein PIT-1, GHF-1; c 99.7 1.9E-17 6.4E-22 135.3 4.0 60 87-146 84-145 (146)
55 1k61_A Mating-type protein alp 99.7 4.1E-17 1.4E-21 113.6 5.0 53 93-145 1-58 (60)
56 1e3o_C Octamer-binding transcr 99.7 3.1E-17 1.1E-21 135.7 4.0 60 87-146 98-159 (160)
57 2dmn_A Homeobox protein TGIF2L 99.7 8.1E-17 2.8E-21 119.7 5.7 61 87-147 4-69 (83)
58 2dmp_A Zinc fingers and homeob 99.7 1.1E-16 3.6E-21 120.6 6.1 55 93-147 16-72 (89)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 7.7E-17 2.6E-21 120.5 4.9 58 87-144 24-86 (87)
60 2da6_A Hepatocyte nuclear fact 99.6 2E-16 6.9E-21 122.2 6.7 61 88-148 4-87 (102)
61 2l9r_A Homeobox protein NKX-3. 99.6 2.8E-17 9.7E-22 118.6 1.6 55 95-149 9-65 (69)
62 1wi3_A DNA-binding protein SAT 99.6 1.5E-16 5E-21 114.4 5.0 58 87-144 4-64 (71)
63 1le8_B Mating-type protein alp 99.6 7.9E-17 2.7E-21 119.6 3.7 58 91-148 3-65 (83)
64 3d1n_I POU domain, class 6, tr 99.6 1.5E-16 5.1E-21 130.3 5.7 59 87-145 90-150 (151)
65 2xsd_C POU domain, class 3, tr 99.6 7.3E-17 2.5E-21 134.3 3.6 62 87-148 96-159 (164)
66 3nau_A Zinc fingers and homeob 99.6 2.3E-16 7.7E-21 112.9 4.6 51 97-147 11-63 (66)
67 2e19_A Transcription factor 8; 99.6 1.5E-16 5E-21 113.1 3.3 53 94-146 7-61 (64)
68 1lfb_A Liver transcription fac 99.6 1.1E-16 3.7E-21 123.2 2.5 61 88-148 7-90 (99)
69 1x2m_A LAG1 longevity assuranc 99.6 1.2E-16 4.1E-21 113.8 2.4 48 98-145 8-58 (64)
70 3l1p_A POU domain, class 5, tr 99.6 3.2E-16 1.1E-20 129.1 4.4 59 88-146 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 5.4E-16 1.8E-20 128.3 3.4 62 86-147 93-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 1.6E-15 5.5E-20 108.4 3.9 57 96-152 4-65 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 4.8E-14 1.6E-18 120.4 2.5 58 88-145 113-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 1.4E-12 4.6E-17 98.5 5.0 53 95-147 10-67 (89)
75 2da7_A Zinc finger homeobox pr 99.3 1.1E-12 3.6E-17 94.7 3.7 44 99-142 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.2 3.1E-12 1.1E-16 110.9 3.8 57 87-143 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.2 2.1E-12 7.1E-17 117.7 2.0 54 91-144 366-421 (421)
78 2nzz_A Penetratin conjugated G 99.0 1E-11 3.6E-16 79.0 -1.9 25 130-154 1-25 (37)
79 2ys9_A Homeobox and leucine zi 94.7 0.019 6.4E-07 41.0 2.8 37 101-137 17-55 (70)
80 1hjb_A Ccaat/enhancer binding 90.1 0.86 3E-05 33.6 6.5 42 140-181 29-74 (87)
81 2jn6_A Protein CGL2762, transp 88.9 0.097 3.3E-06 38.1 0.5 42 94-137 3-45 (97)
82 1gu4_A CAAT/enhancer binding p 85.7 1.7 5.7E-05 31.4 5.6 39 140-178 29-71 (78)
83 2glo_A Brinker CG9653-PA; prot 84.6 1.9 6.3E-05 28.4 5.1 44 94-137 3-47 (59)
84 2yy0_A C-MYC-binding protein; 84.3 1.7 5.8E-05 29.1 4.7 32 149-180 18-49 (53)
85 2dgc_A Protein (GCN4); basic d 82.8 3 0.0001 28.7 5.6 31 150-180 30-60 (63)
86 1t2k_D Cyclic-AMP-dependent tr 82.5 4.9 0.00017 27.1 6.6 31 149-179 28-58 (61)
87 1dh3_A Transcription factor CR 77.5 5.7 0.00019 26.5 5.5 37 140-179 15-51 (55)
88 1hlv_A CENP-B, major centromer 77.2 2.8 9.6E-05 31.4 4.4 50 92-143 3-53 (131)
89 1ci6_A Transcription factor AT 76.6 8.3 0.00028 26.3 6.3 28 151-178 31-58 (63)
90 1jnm_A Proto-oncogene C-JUN; B 75.6 7.9 0.00027 26.2 5.9 29 152-180 24-52 (62)
91 2elh_A CG11849-PA, LD40883P; s 74.4 3.8 0.00013 29.0 4.3 43 91-136 17-59 (87)
92 1ci6_A Transcription factor AT 74.0 10 0.00034 25.9 6.1 32 149-180 22-53 (63)
93 1dip_A Delta-sleep-inducing pe 73.8 12 0.00042 26.7 6.6 32 149-180 14-45 (78)
94 2wt7_A Proto-oncogene protein 71.1 14 0.00047 25.1 6.3 28 152-179 25-52 (63)
95 1hjb_A Ccaat/enhancer binding 70.0 13 0.00044 27.2 6.3 49 145-194 31-79 (87)
96 1uii_A Geminin; human, DNA rep 69.9 14 0.00047 26.9 6.3 34 147-180 43-76 (83)
97 2wt7_A Proto-oncogene protein 69.6 15 0.00053 24.8 6.3 36 145-180 25-60 (63)
98 1jko_C HIN recombinase, DNA-in 69.5 3 0.0001 25.5 2.4 42 96-140 5-46 (52)
99 1t2k_D Cyclic-AMP-dependent tr 69.2 16 0.00056 24.4 6.3 31 150-180 22-52 (61)
100 1gu4_A CAAT/enhancer binding p 69.1 13 0.00044 26.6 6.0 37 144-180 30-66 (78)
101 2wt7_B Transcription factor MA 65.6 14 0.00047 27.3 5.7 31 149-179 54-84 (90)
102 1jnm_A Proto-oncogene C-JUN; B 64.1 9.1 0.00031 25.8 4.2 37 144-180 23-59 (62)
103 1gd2_E Transcription factor PA 62.6 15 0.0005 25.8 5.1 31 149-179 35-65 (70)
104 1l8d_A DNA double-strand break 62.6 18 0.00061 26.7 6.0 45 153-204 13-57 (112)
105 3hug_A RNA polymerase sigma fa 62.1 9.1 0.00031 27.0 4.1 41 96-140 37-78 (92)
106 3m9b_A Proteasome-associated A 60.8 7.8 0.00027 33.8 4.1 50 129-178 47-96 (251)
107 2x7l_M HIV REV; nuclear export 60.2 6.4 0.00022 30.3 3.0 33 103-150 16-51 (115)
108 2oxj_A Hybrid alpha/beta pepti 60.1 17 0.00058 22.1 4.3 26 155-180 6-31 (34)
109 3lph_A Protein REV; helix-loop 60.1 12 0.0004 26.6 4.1 34 102-150 18-54 (72)
110 1je8_A Nitrate/nitrite respons 59.9 9.2 0.00031 26.6 3.7 47 94-144 19-65 (82)
111 1gd2_E Transcription factor PA 59.6 20 0.00068 25.1 5.3 44 136-179 14-58 (70)
112 1t6f_A Geminin; coiled-coil, c 59.5 16 0.00053 22.5 4.1 29 150-178 7-35 (37)
113 1nkp_A C-MYC, MYC proto-oncoge 58.4 18 0.00063 26.1 5.2 33 145-177 54-86 (88)
114 1fse_A GERE; helix-turn-helix 57.7 14 0.00048 24.3 4.3 47 94-144 9-55 (74)
115 1tc3_C Protein (TC3 transposas 57.6 13 0.00043 22.0 3.7 40 96-138 5-44 (51)
116 1go4_E MAD1 (mitotic arrest de 57.6 17 0.00057 27.4 4.9 32 149-180 11-42 (100)
117 2p7v_B Sigma-70, RNA polymeras 57.2 8.7 0.0003 25.5 3.1 43 96-138 5-48 (68)
118 3s9g_A Protein hexim1; cyclin 57.1 22 0.00074 26.8 5.4 28 151-178 66-93 (104)
119 3c57_A Two component transcrip 57.0 11 0.00037 27.0 3.8 46 95-144 26-71 (95)
120 1nlw_A MAD protein, MAX dimeri 56.0 19 0.00065 25.6 4.9 23 156-178 53-75 (80)
121 1p4w_A RCSB; solution structur 55.0 28 0.00096 25.3 5.8 47 94-144 32-78 (99)
122 2o8x_A Probable RNA polymerase 54.3 13 0.00045 24.2 3.6 41 96-140 15-56 (70)
123 1ku3_A Sigma factor SIGA; heli 54.3 16 0.00054 24.5 4.1 43 96-138 10-53 (73)
124 3m48_A General control protein 54.1 22 0.00074 21.5 4.0 25 156-180 6-30 (33)
125 2rn7_A IS629 ORFA; helix, all 53.1 12 0.0004 27.1 3.5 44 94-137 4-52 (108)
126 1wlq_A Geminin; coiled-coil; 2 51.2 38 0.0013 24.6 5.8 32 148-179 36-67 (83)
127 1x3u_A Transcriptional regulat 50.6 13 0.00044 25.0 3.1 45 96-144 16-60 (79)
128 3mzy_A RNA polymerase sigma-H 50.2 16 0.00054 27.3 3.9 38 96-138 109-147 (164)
129 1iuf_A Centromere ABP1 protein 49.7 23 0.00078 27.3 4.8 49 91-140 6-61 (144)
130 1nkp_B MAX protein, MYC proto- 48.6 25 0.00086 24.8 4.5 24 155-178 52-75 (83)
131 1tty_A Sigma-A, RNA polymerase 46.3 23 0.0008 24.7 4.0 47 96-142 18-65 (87)
132 2wvr_A Geminin; DNA replicatio 46.1 46 0.0016 28.1 6.3 33 147-179 112-144 (209)
133 2rnj_A Response regulator prot 45.6 13 0.00045 26.1 2.6 47 94-144 27-73 (91)
134 1p9i_A Cortexillin I/GCN4 hybr 45.5 26 0.00089 20.3 3.3 24 155-178 4-27 (31)
135 3c3g_A Alpha/beta peptide with 45.1 48 0.0016 19.9 4.5 24 157-180 7-30 (33)
136 1xsv_A Hypothetical UPF0122 pr 44.4 64 0.0022 23.8 6.5 45 96-144 25-70 (113)
137 1s7o_A Hypothetical UPF0122 pr 44.0 68 0.0023 23.8 6.6 46 96-144 22-67 (113)
138 3t72_q RNA polymerase sigma fa 44.0 72 0.0025 23.2 6.6 42 96-137 19-61 (99)
139 1r8e_A Multidrug-efflux transp 43.8 43 0.0015 28.0 6.1 74 94-179 42-115 (278)
140 3c3f_A Alpha/beta peptide with 43.2 46 0.0016 20.1 4.3 26 155-180 6-31 (34)
141 2jee_A YIIU; FTSZ, septum, coi 41.3 60 0.0021 23.4 5.5 10 169-178 53-62 (81)
142 3ulq_B Transcriptional regulat 40.4 29 0.00099 24.7 3.8 46 93-142 26-71 (90)
143 2yy0_A C-MYC-binding protein; 39.9 38 0.0013 22.3 4.0 25 149-173 25-49 (53)
144 3gp4_A Transcriptional regulat 39.1 1.2E+02 0.0043 23.2 7.7 34 93-137 37-70 (142)
145 1q06_A Transcriptional regulat 38.4 69 0.0024 24.4 6.0 74 94-180 36-109 (135)
146 3fmy_A HTH-type transcriptiona 38.3 28 0.00094 23.3 3.3 41 95-140 9-49 (73)
147 3gpv_A Transcriptional regulat 36.5 1E+02 0.0034 23.9 6.7 73 93-178 51-123 (148)
148 1deb_A APC protein, adenomatou 36.0 48 0.0017 21.9 3.9 27 152-178 5-31 (54)
149 1rp3_A RNA polymerase sigma fa 35.3 36 0.0012 27.1 4.0 39 96-138 187-226 (239)
150 1a93_B MAX protein, coiled coi 35.3 54 0.0018 19.9 3.7 20 155-174 12-31 (34)
151 2rgt_A Fusion of LIM/homeobox 34.8 0.69 2.4E-05 37.1 -6.5 30 88-117 134-163 (169)
152 3mq7_A Bone marrow stromal ant 34.6 90 0.0031 24.0 5.8 36 145-180 73-108 (121)
153 2dgc_A Protein (GCN4); basic d 33.8 60 0.002 22.0 4.3 25 149-173 36-60 (63)
154 3o9x_A Uncharacterized HTH-typ 33.6 31 0.0011 25.7 3.1 40 97-141 71-110 (133)
155 2jee_A YIIU; FTSZ, septum, coi 33.5 1.2E+02 0.0043 21.7 6.2 13 162-174 53-65 (81)
156 1kd8_B GABH BLL, GCN4 acid bas 33.3 80 0.0027 19.3 4.3 26 155-180 6-31 (36)
157 1u78_A TC3 transposase, transp 32.7 37 0.0013 24.9 3.5 41 95-138 5-45 (141)
158 2vz4_A Tipal, HTH-type transcr 32.2 86 0.003 22.7 5.4 67 94-179 37-103 (108)
159 2bni_A General control protein 32.1 76 0.0026 19.2 4.0 23 158-180 9-31 (34)
160 3he5_B Synzip2; heterodimeric 31.8 1E+02 0.0035 19.7 5.3 27 147-173 21-47 (52)
161 2qko_A Possible transcriptiona 31.8 29 0.00099 27.0 2.8 42 102-143 34-76 (215)
162 2q0o_A Probable transcriptiona 31.0 42 0.0014 27.5 3.8 47 94-144 173-219 (236)
163 3hh0_A Transcriptional regulat 30.9 1.2E+02 0.004 23.5 6.3 69 94-178 40-108 (146)
164 3hnw_A Uncharacterized protein 30.7 1E+02 0.0035 24.0 5.8 26 152-177 105-130 (138)
165 3iv1_A Tumor susceptibility ge 30.5 1.5E+02 0.005 21.2 6.4 35 138-172 13-47 (78)
166 2oqq_A Transcription factor HY 30.4 1E+02 0.0036 19.4 4.8 25 147-171 14-38 (42)
167 2xi8_A Putative transcription 30.3 15 0.0005 23.3 0.7 23 118-140 17-39 (66)
168 3ppb_A Putative TETR family tr 30.0 30 0.001 25.9 2.6 43 101-143 14-57 (195)
169 1r8d_A Transcription activator 29.8 1.3E+02 0.0043 21.8 6.0 67 94-179 38-104 (109)
170 2w6a_A ARF GTPase-activating p 29.8 1.2E+02 0.004 20.7 5.1 27 154-180 31-57 (63)
171 2jpc_A SSRB; DNA binding prote 29.3 28 0.00095 22.1 1.9 27 118-144 16-42 (61)
172 1uo4_A General control protein 29.2 92 0.0031 18.8 4.0 23 158-180 9-31 (34)
173 2r1j_L Repressor protein C2; p 29.1 16 0.00055 23.3 0.7 24 118-141 21-44 (68)
174 2k27_A Paired box protein PAX- 29.0 72 0.0025 24.3 4.7 41 95-138 24-64 (159)
175 3kz9_A SMCR; transcriptional r 28.9 45 0.0015 25.2 3.4 42 103-144 24-66 (206)
176 2wuj_A Septum site-determining 28.3 50 0.0017 21.8 3.1 24 155-178 32-55 (57)
177 3rd3_A Probable transcriptiona 28.2 28 0.00095 26.3 2.1 43 102-144 16-59 (197)
178 2fq4_A Transcriptional regulat 28.2 35 0.0012 26.1 2.7 42 102-143 18-60 (192)
179 3clo_A Transcriptional regulat 27.5 60 0.0021 27.0 4.3 47 95-145 196-242 (258)
180 1or7_A Sigma-24, RNA polymeras 27.4 59 0.002 25.0 4.0 40 97-140 141-181 (194)
181 1zug_A Phage 434 CRO protein; 27.3 17 0.0006 23.4 0.7 24 118-141 19-42 (71)
182 2hxo_A Putative TETR-family tr 27.3 82 0.0028 25.6 5.0 52 92-143 11-64 (237)
183 3ccy_A Putative TETR-family tr 26.6 67 0.0023 24.6 4.1 42 102-143 20-62 (203)
184 3bs3_A Putative DNA-binding pr 26.5 19 0.00066 23.6 0.8 23 118-140 26-48 (76)
185 3tnu_B Keratin, type II cytosk 26.5 92 0.0032 23.6 4.8 7 132-138 9-15 (129)
186 1nkp_B MAX protein, MYC proto- 26.1 91 0.0031 21.7 4.4 33 144-176 48-80 (83)
187 3bd1_A CRO protein; transcript 26.1 18 0.00062 24.4 0.6 23 118-140 14-36 (79)
188 3dcf_A Transcriptional regulat 26.1 33 0.0011 26.3 2.2 42 102-143 37-79 (218)
189 3him_A Probable transcriptiona 26.0 56 0.0019 24.7 3.5 43 101-143 21-64 (211)
190 4dzn_A Coiled-coil peptide CC- 25.9 1E+02 0.0036 17.9 4.5 26 152-177 4-29 (33)
191 1am9_A Srebp-1A, protein (ster 25.8 76 0.0026 22.3 3.9 26 154-179 54-79 (82)
192 1l3l_A Transcriptional activat 25.7 59 0.002 26.5 3.8 47 94-144 171-217 (234)
193 3w03_C DNA repair protein XRCC 25.4 87 0.003 25.9 4.7 24 155-178 150-173 (184)
194 1nlw_A MAD protein, MAX dimeri 25.2 98 0.0033 21.8 4.4 38 139-176 43-80 (80)
195 2dk5_A DNA-directed RNA polyme 25.1 89 0.0031 22.4 4.3 39 94-133 15-54 (91)
196 3m91_A Proteasome-associated A 25.0 1.5E+02 0.0051 19.4 5.5 32 147-178 13-44 (51)
197 1adr_A P22 C2 repressor; trans 25.0 21 0.00071 23.3 0.7 24 118-141 21-44 (76)
198 1kd8_A GABH AIV, GCN4 acid bas 24.9 1E+02 0.0036 18.8 3.7 23 158-180 9-31 (36)
199 3qqa_A CMER; alpha-helical, he 24.6 68 0.0023 24.5 3.8 42 102-143 25-67 (216)
200 2rae_A Transcriptional regulat 24.3 46 0.0016 25.4 2.7 40 102-141 23-63 (207)
201 2b5a_A C.BCLI; helix-turn-heli 24.3 22 0.00076 23.3 0.7 23 118-140 26-48 (77)
202 3on2_A Probable transcriptiona 24.1 45 0.0015 25.0 2.6 43 102-144 18-61 (199)
203 2dg7_A Putative transcriptiona 24.0 38 0.0013 25.8 2.2 41 102-142 13-54 (195)
204 3qbm_A TETR transcriptional re 24.0 46 0.0016 25.0 2.6 43 102-144 13-56 (199)
205 1q08_A Zn(II)-responsive regul 23.8 1.2E+02 0.0042 21.1 4.8 60 119-179 9-68 (99)
206 2iu5_A DHAS, YCEG, HTH-type dh 23.7 61 0.0021 24.7 3.3 43 102-144 19-62 (195)
207 2lv7_A Calcium-binding protein 23.5 1.1E+02 0.0039 21.6 4.6 45 93-137 26-79 (100)
208 1sgm_A Putative HTH-type trans 23.4 63 0.0022 24.0 3.4 43 102-144 12-56 (191)
209 2fd5_A Transcriptional regulat 23.4 74 0.0025 23.7 3.7 43 102-144 13-56 (180)
210 1r69_A Repressor protein CI; g 23.4 23 0.00079 22.6 0.7 24 118-141 17-40 (69)
211 1etf_B REV peptide; complex (R 23.1 42 0.0015 19.1 1.6 13 137-149 7-19 (26)
212 3bdn_A Lambda repressor; repre 23.0 51 0.0018 26.7 2.9 23 118-140 33-55 (236)
213 2qwt_A Transcriptional regulat 22.9 52 0.0018 25.2 2.8 41 103-144 20-61 (196)
214 3gzi_A Transcriptional regulat 22.7 64 0.0022 24.7 3.3 42 103-144 24-66 (218)
215 2x48_A CAG38821; archeal virus 22.7 26 0.00087 21.9 0.8 36 99-137 18-53 (55)
216 3omt_A Uncharacterized protein 22.6 25 0.00084 23.1 0.7 23 118-140 24-46 (73)
217 2xdn_A HTH-type transcriptiona 22.3 65 0.0022 24.8 3.3 42 102-143 17-59 (210)
218 1y7y_A C.AHDI; helix-turn-heli 22.2 26 0.00088 22.7 0.7 23 118-140 29-51 (74)
219 3he0_A Transcriptional regulat 22.0 56 0.0019 24.5 2.8 45 100-144 15-60 (196)
220 1k78_A Paired box protein PAX5 21.9 71 0.0024 23.9 3.4 41 95-138 31-71 (149)
221 1wt6_A Myotonin-protein kinase 21.8 2.3E+02 0.0077 20.4 6.0 27 152-178 47-73 (81)
222 3g1o_A Transcriptional regulat 21.8 53 0.0018 26.4 2.7 42 102-143 49-91 (255)
223 3nxc_A HTH-type protein SLMA; 21.7 58 0.002 24.8 2.8 36 108-143 37-73 (212)
224 3nrg_A TETR family transcripti 21.5 75 0.0026 24.2 3.5 42 102-143 19-61 (217)
225 3i5g_B Myosin regulatory light 21.5 1.4E+02 0.0048 22.4 5.1 39 92-130 5-50 (153)
226 1pdn_C Protein (PRD paired); p 21.5 85 0.0029 22.1 3.6 40 96-138 17-56 (128)
227 2yve_A Transcriptional regulat 21.4 64 0.0022 24.5 3.0 42 102-143 10-52 (185)
228 3b7h_A Prophage LP1 protein 11 21.3 28 0.00096 22.8 0.8 23 118-140 23-45 (78)
229 2dg8_A Putative TETR-family tr 21.3 38 0.0013 25.9 1.7 43 102-144 15-58 (193)
230 2kpj_A SOS-response transcript 21.2 27 0.00093 24.3 0.7 23 118-140 25-47 (94)
231 2i10_A Putative TETR transcrip 21.2 68 0.0023 24.8 3.2 44 101-144 16-60 (202)
232 2np5_A Transcriptional regulat 21.2 30 0.001 26.8 1.1 42 102-143 15-57 (203)
233 3v86_A De novo design helix; c 20.7 1.1E+02 0.0037 17.1 2.9 22 155-176 5-26 (27)
234 2ef8_A C.ECOT38IS, putative tr 20.7 47 0.0016 22.0 1.9 23 118-140 26-48 (84)
235 2qtq_A Transcriptional regulat 20.7 56 0.0019 24.8 2.5 42 102-143 22-64 (213)
236 3bru_A Regulatory protein, TET 20.6 68 0.0023 24.6 3.1 42 102-143 36-78 (222)
237 2zxx_A Geminin; coiled-coil, c 20.4 2.1E+02 0.007 20.4 5.2 30 149-178 33-62 (79)
238 2hy6_A General control protein 20.4 1.5E+02 0.0052 17.8 4.0 23 158-180 9-31 (34)
239 2wg5_A General control protein 20.2 92 0.0032 23.1 3.6 24 155-178 12-35 (109)
240 3bni_A Putative TETR-family tr 20.1 58 0.002 25.7 2.6 43 102-144 49-92 (229)
241 3bqz_B HTH-type transcriptiona 20.1 58 0.002 24.4 2.5 43 102-144 8-51 (194)
242 3qkx_A Uncharacterized HTH-typ 20.1 72 0.0025 23.6 3.0 43 102-144 14-57 (188)
243 3kz3_A Repressor protein CI; f 20.0 29 0.00099 23.3 0.6 24 118-141 28-51 (80)
No 1
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=1.9e-19 Score=131.79 Aligned_cols=64 Identities=36% Similarity=0.556 Sum_probs=58.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHhHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEV 150 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 150 (237)
..+.+|.|++||..|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+.+.+.
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 4466888999999999999999999999999 999999999999999999999999999876543
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=132.37 Aligned_cols=62 Identities=29% Similarity=0.441 Sum_probs=57.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 86 RINISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 86 ~~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
...+.+|.|++||.+|+.+||..|..++||+. +.+||.+|||+++||+|||||||+|+|+++
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34567889999999999999999999999999 899999999999999999999999999865
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=3.6e-19 Score=131.23 Aligned_cols=62 Identities=27% Similarity=0.468 Sum_probs=57.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
++..+|.|++|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 3467889999999999999999999999999 9999999999999999999999999998654
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=8.8e-20 Score=128.18 Aligned_cols=59 Identities=32% Similarity=0.428 Sum_probs=51.4
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 89 ISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 89 ~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
+.+|.|+.||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 56889999999999999999999999999 999999999999999999999999999864
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=2e-19 Score=126.89 Aligned_cols=59 Identities=32% Similarity=0.488 Sum_probs=54.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 89 ISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 89 ~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
+.+|.|+.||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 46889999999999999999999999999 999999999999999999999999999753
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=128.53 Aligned_cols=61 Identities=31% Similarity=0.446 Sum_probs=57.2
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
++..+|.|++|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 3467889999999999999999999999999 999999999999999999999999999864
No 7
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=131.64 Aligned_cols=61 Identities=33% Similarity=0.400 Sum_probs=57.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
..+.+|.|+.|+.+|+.+||..|..++||+. +.+||..|+|+++||+|||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 4567889999999999999999999999999 999999999999999999999999999754
No 8
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=3.4e-19 Score=131.59 Aligned_cols=62 Identities=29% Similarity=0.472 Sum_probs=57.0
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
..+.+|.|+.|+.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999 9999999999999999999999999998754
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=131.48 Aligned_cols=62 Identities=24% Similarity=0.377 Sum_probs=57.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
..+.+|.|++|+.+|+.+||.+|..++||+. +.+||.+|||+++||+|||||||+|+|+++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 3467899999999999999999999999999 9999999999999999999999999998754
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=132.81 Aligned_cols=62 Identities=31% Similarity=0.399 Sum_probs=57.9
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 86 RINISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 86 ~~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
...+.+|.|+.|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999 999999999999999999999999999865
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.6e-19 Score=129.87 Aligned_cols=61 Identities=25% Similarity=0.457 Sum_probs=57.2
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.++.+|+|++|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+.+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4467889999999999999999999999999 999999999999999999999999999754
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-19 Score=128.34 Aligned_cols=61 Identities=30% Similarity=0.407 Sum_probs=57.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.++.+|.|++|+.+|+.+||..|..++||+. +.+||..|||++.||+|||||||+|+|+++
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4567889999999999999999999999999 999999999999999999999999999764
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.6e-19 Score=130.60 Aligned_cols=62 Identities=29% Similarity=0.452 Sum_probs=57.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
..+.+|.|++|+.+|+.+||..|..++||+. +.+||..|+|+++||+|||||||+|+|+++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3467899999999999999999999999999 9999999999999999999999999998654
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=5.9e-19 Score=126.88 Aligned_cols=60 Identities=33% Similarity=0.531 Sum_probs=56.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
+..+++|++|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 456788999999999999999999999999 999999999999999999999999999764
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-19 Score=127.47 Aligned_cols=61 Identities=20% Similarity=0.382 Sum_probs=57.2
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
..+.+|.|++||.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4467899999999999999999999999998 999999999999999999999999999764
No 16
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=4.1e-19 Score=127.05 Aligned_cols=61 Identities=28% Similarity=0.471 Sum_probs=57.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
++.+|.|+.|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++.
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 357889999999999999999999999998 9999999999999999999999999998754
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.75 E-value=1.7e-18 Score=126.73 Aligned_cols=62 Identities=34% Similarity=0.495 Sum_probs=57.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
....+|+|++|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3456889999999999999999999999999 9999999999999999999999999998653
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-19 Score=128.29 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=57.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
+++.+|.|+.||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4567899999999999999999999999999 999999999999999999999999999753
No 19
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=7.8e-19 Score=133.27 Aligned_cols=64 Identities=31% Similarity=0.404 Sum_probs=59.0
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHhHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEV 150 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 150 (237)
..+.+|.|+.||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|++..+.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 4467888999999999999999999999999 999999999999999999999999999876544
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=6.6e-19 Score=123.33 Aligned_cols=56 Identities=30% Similarity=0.542 Sum_probs=51.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
.+|.|+.||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999 9999999999999999999999999996
No 21
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=5.1e-19 Score=131.02 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=55.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh----CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKL----HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~----~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
..+.+|+|+.||.+|+..||.+|+. ++||+. +++||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567889999999999999999999 999999 9999999999999999999999999874
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=120.82 Aligned_cols=55 Identities=33% Similarity=0.536 Sum_probs=53.0
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 91 GRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
+|+|+.||.+|+.+||..|..++||+. +.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999 9999999999999999999999999986
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=124.82 Aligned_cols=59 Identities=32% Similarity=0.509 Sum_probs=55.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
.+|.|+.||.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 5789999999999999999999999999 9999999999999999999999999998654
No 24
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=126.63 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=58.2
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 86 RINISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 86 ~~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
..++.+|.|++|+.+|+.+||..|..++||+. +.+||..|||++.||+|||||||+|+|+++.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 34567889999999999999999999999999 9999999999999999999999999998653
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.74 E-value=9.9e-19 Score=125.22 Aligned_cols=58 Identities=33% Similarity=0.512 Sum_probs=55.2
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.+|.|+.||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 4788999999999999999999999998 999999999999999999999999999865
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=9.3e-19 Score=129.52 Aligned_cols=60 Identities=32% Similarity=0.493 Sum_probs=52.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
+..+|.|+.|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 456889999999999999999999999999 999999999999999999999999999864
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=1.4e-18 Score=121.21 Aligned_cols=56 Identities=36% Similarity=0.516 Sum_probs=53.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHH
Q 042627 91 GRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLK 146 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krk 146 (237)
+|.|+.||.+|+..||..|..++||+. +.+||..+||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 678999999999999999999999999 99999999999999999999999999974
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=7.8e-19 Score=124.77 Aligned_cols=59 Identities=29% Similarity=0.500 Sum_probs=55.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 89 ISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 89 ~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
+.+|.|+.||.+|+.+||..|..++||+. +.+||..+||++.||++||||||+|+|+++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 46789999999999999999999999999 999999999999999999999999999764
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.2e-19 Score=128.95 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhC----CCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLH----TTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~----~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
..+.+|.|+.||.+|+.+||.+|..+ +||+. +++||.+|||+++||+|||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 34678899999999999999999999 99998 999999999999999999999999999854
No 30
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=9.7e-19 Score=131.13 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=53.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.+..+|.|+.|+.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4467889999999999999999999999999 999999999999999999999999999753
No 31
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2e-18 Score=124.79 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=54.0
Q ss_pred CCCCccCCHHHHHHHHHHHhh-CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 91 GRKKLRLTIEQSRLLEDSFKL-HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F~~-~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.++|++|+.+|+.+||..|.. ++||+. +.+||..+||+++||+|||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 568899999999999999996 999999 999999999999999999999999999865
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.73 E-value=2.2e-18 Score=125.05 Aligned_cols=60 Identities=28% Similarity=0.448 Sum_probs=56.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.+.+|+|++|+.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 356889999999999999999999999999 999999999999999999999999999764
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-19 Score=124.70 Aligned_cols=60 Identities=35% Similarity=0.581 Sum_probs=56.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHhH
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNE 149 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~ 149 (237)
++|.|++||.+|+.+||..|..++||+. +.+||..+||+++||++||||||+|+|++..+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 3788999999999999999999999999 99999999999999999999999999987654
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=2.5e-18 Score=123.05 Aligned_cols=59 Identities=31% Similarity=0.550 Sum_probs=55.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
.+|.|++||.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4788999999999999999999999999 9999999999999999999999999998653
No 35
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=3.6e-18 Score=123.81 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=54.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhh-CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKL-HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~-~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.+++|++||.+|+.+||..|.. ++||+. +.+||..+||+++||+|||||||+|+|+++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999995 999999 999999999999999999999999999865
No 36
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=1.5e-18 Score=128.63 Aligned_cols=58 Identities=12% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh-----CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKL-----HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~-----~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
..+.+|.|+.||.+|+.+|| .|.. ++||+. +++||.+|+|+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 44678899999999999999 7999 999998 9999999999999999999999999874
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=2.9e-18 Score=118.11 Aligned_cols=55 Identities=35% Similarity=0.563 Sum_probs=52.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
.+|.|++|+.+|+.+||..|..++||+. +.+||..+||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4678999999999999999999999999 899999999999999999999999986
No 38
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=124.39 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=53.9
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 91 GRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
.++|++||.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 456778999999999999999999999 9999999999999999999999999998653
No 39
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=4.3e-18 Score=125.19 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=53.3
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 92 RKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 92 R~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
.+|++||.+|+.+||..|..++||+. +++||..+||+++||+|||||||+|+|+.+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 56778999999999999999999999 9999999999999999999999999997653
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=117.30 Aligned_cols=52 Identities=35% Similarity=0.487 Sum_probs=48.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHH
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLK 146 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krk 146 (237)
|.||.+|+..||..|..++||+. +.+||..+||+++||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 57999999999999999999999 99999999999999999999999999975
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=3.1e-18 Score=119.46 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=48.4
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 93 KKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.|++||.+|+.+||..|..++||+. +.+||..+||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 5789999999999999999999999 999999999999999999999999999764
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.9e-18 Score=130.09 Aligned_cols=61 Identities=30% Similarity=0.507 Sum_probs=53.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
+..+++|+.||.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|+|+++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 467889999999999999999999999999 9999999999999999999999999998754
No 43
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=3.6e-18 Score=130.15 Aligned_cols=61 Identities=23% Similarity=0.202 Sum_probs=54.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
...+|+|++|+.+|+.+||..|..++||+. +.+||.+|||+++||+|||||||+|+|+.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 345788999999999999999999999999 8999999999999999999999999998764
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=3.4e-18 Score=119.41 Aligned_cols=57 Identities=35% Similarity=0.603 Sum_probs=46.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
.+.+|.|++|+.+|+.+||..|..++||+. +.+||..+||++.||++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356788999999999999999999999999 999999999999999999999999976
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-18 Score=124.07 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=54.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 90 SGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
..+.|++||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+++.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 4556899999999999999999999998 9999999999999999999999999998653
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=6.3e-18 Score=122.50 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=56.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 89 ISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 89 ~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
..++.|+.||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+++.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 35778999999999999999999999999 8999999999999999999999999998653
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=127.01 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhC---------------CCCccchhhccchHHHHHHHHh
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLN---------------LEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~Lg---------------L~~rQVkvWFQNRRak~Krkq~ 148 (237)
..+.+|.|+.|+.+|+.+||.+|..++||+. +++||..|+ |++.||++||||||+|+|+++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999 999999999 9999999999999999998753
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.6e-17 Score=120.19 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh---CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKL---HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~---~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
.++.+++|++|+.+|+.+||.+|.. ++||+. +.+||..+||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4467889999999999999999987 999999 999999999999999999999999999764
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=1.2e-17 Score=120.86 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHhHH
Q 042627 90 SGRKKLRLTIEQSRLLEDSF---KLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEV 150 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F---~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 150 (237)
.+|+|++|+.+|+.+||.+| ..++||+. +.+||..+||++.||++||||||+|+|++....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 36889999999999999999 89999999 999999999999999999999999999876544
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=3.3e-17 Score=122.15 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=54.2
Q ss_pred CCCCccCCHHHHHHHHHHH---hhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 91 GRKKLRLTIEQSRLLEDSF---KLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F---~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
||+|++|+.+|+.+||.+| ..++||+. +.+||..+||++.||++||||||+|+|++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 6889999999999999999 89999999 9999999999999999999999999998654
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.8e-17 Score=125.29 Aligned_cols=56 Identities=30% Similarity=0.475 Sum_probs=51.8
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 93 KKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
+..+||.+|+.+||..|..++||+. +.+||..|||+++||+|||||||+|||+++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 3448999999999999999999999 9999999999999999999999999997653
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=1e-17 Score=118.22 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=54.0
Q ss_pred CCCCCCccCCHHHHHHHHHHH---hhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 89 ISGRKKLRLTIEQSRLLEDSF---KLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 89 ~~rR~Rt~~t~~Ql~~LE~~F---~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
.++++|+.|+.+|+.+||.+| ..++||+. +.+||..+||++.||++||||||+|+|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999 89999999 9999999999999999999999999986
No 53
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=9.2e-18 Score=121.90 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=52.8
Q ss_pred CCCCCccCCHHHHHHHHHHH-hhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHH
Q 042627 90 SGRKKLRLTIEQSRLLEDSF-KLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLK 146 (237)
Q Consensus 90 ~rR~Rt~~t~~Ql~~LE~~F-~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krk 146 (237)
+.+.|++++.+|+.+||..| ..++||+. +.+||.+|||+++||+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 45677789999999999999 99999999 89999999999999999999999999964
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=1.9e-17 Score=135.30 Aligned_cols=60 Identities=35% Similarity=0.501 Sum_probs=53.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLK 146 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krk 146 (237)
..+.+|+|+.|+.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4567888999999999999999999999999 99999999999999999999999999975
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=4.1e-17 Score=113.65 Aligned_cols=53 Identities=30% Similarity=0.475 Sum_probs=50.8
Q ss_pred CCccCCHHHHHHHHHHHhh---CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 93 KKLRLTIEQSRLLEDSFKL---HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~---~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
+|++|+.+|+.+||..|.. ++||+. +.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 999999 9999999999999999999999999986
No 56
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.66 E-value=3.1e-17 Score=135.70 Aligned_cols=60 Identities=32% Similarity=0.463 Sum_probs=52.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLK 146 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krk 146 (237)
..+.+|+|+.|+.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|++
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3467889999999999999999999999999 99999999999999999999999999975
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.66 E-value=8.1e-17 Score=119.70 Aligned_cols=61 Identities=28% Similarity=0.321 Sum_probs=55.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh---CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKL---HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~---~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
..+.+++|++|+.+|+.+|+.+|.. ++||+. +++||..+||+++||++||||||+|+|+..
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 4467888999999999999999988 599999 999999999999999999999999998754
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=120.62 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=51.2
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 93 KKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
++.+||.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4455999999999999999999999 999999999999999999999999999764
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=7.7e-17 Score=120.48 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=54.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh---CCCCCH--HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKL---HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~---~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
..+.+++|++|+.+|+.+||.+|.. ++||+. +.+||..+||+++||++||||||+|+|
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3456778999999999999999999 999999 999999999999999999999999997
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=122.24 Aligned_cols=61 Identities=23% Similarity=0.442 Sum_probs=56.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHh---------------------CCCCccchhhccchHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQL---------------------NLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~L---------------------gL~~rQVkvWFQNRRak~K 144 (237)
++.+|.|+.|++.|+.+||..|..++||+. |++||..| .|++.+|+|||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 467889999999999999999999999999 99999999 7999999999999999999
Q ss_pred HHHh
Q 042627 145 LKQN 148 (237)
Q Consensus 145 rkq~ 148 (237)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8653
No 61
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-17 Score=118.65 Aligned_cols=55 Identities=38% Similarity=0.532 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHhH
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNE 149 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~ 149 (237)
..+|..|+..||..|..++||+. +.+||..+||+++||+|||||||+|+|+++.+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 45799999999999999999999 99999999999999999999999999987643
No 62
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.5e-16 Score=114.38 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=53.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhh-CCCCCH--HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKL-HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~-~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
.+..+|.||.|+.+|+.+|+.+|.. ++||+. |+.||.++||++++|+|||||||--.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467899999999999999999999 999999 999999999999999999999997543
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=7.9e-17 Score=119.62 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=52.5
Q ss_pred CCCCccCCHHHHHHHHHHHhh---CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 91 GRKKLRLTIEQSRLLEDSFKL---HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F~~---~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
+++|++|+.+|+.+||.+|.. ++||+. +.+||..+||+++||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456677999999999999999 999999 9999999999999999999999999998643
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=130.32 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
.++.+|+|++|+.+|+.+||..|..++||+. +.+||.++||+++||+|||||||+|+|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3467889999999999999999999999999 9999999999999999999999999986
No 65
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.63 E-value=7.3e-17 Score=134.27 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=50.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHh
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQN 148 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~ 148 (237)
..+.+|+|++|+..|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+++.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3467889999999999999999999999999 9999999999999999999999999998654
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.62 E-value=2.3e-16 Score=112.88 Aligned_cols=51 Identities=25% Similarity=0.286 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 97 LTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 97 ~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
-|.+|+.+||..|..++||+. +.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 378999999999999999999 999999999999999999999999999754
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=113.08 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=48.7
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLK 146 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krk 146 (237)
+..++.+|+..||..|..++||+. +.+||.+|||+++||+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 445679999999999999999999 99999999999999999999999988753
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.61 E-value=1.1e-16 Score=123.16 Aligned_cols=61 Identities=18% Similarity=0.419 Sum_probs=52.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHH------------------hC---CCCccchhhccchHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQ------------------LN---LEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~------------------Lg---L~~rQVkvWFQNRRak~K 144 (237)
.+.+|.|+.|+..|+.+||..|..++||+. |++||.. || |++.||+|||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 456889999999999999999999999999 9999999 88 999999999999999998
Q ss_pred HHHh
Q 042627 145 LKQN 148 (237)
Q Consensus 145 rkq~ 148 (237)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 8764
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=1.2e-16 Score=113.83 Aligned_cols=48 Identities=27% Similarity=0.559 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHH-hhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 98 TIEQSRLLEDSF-KLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 98 t~~Ql~~LE~~F-~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
.+.|+.+||+.| ..++||+. +.+||.+|||+++||+|||||||+|+|+
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 356899999999 56999998 8999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.60 E-value=3.2e-16 Score=129.10 Aligned_cols=59 Identities=31% Similarity=0.385 Sum_probs=55.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLK 146 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krk 146 (237)
++.+|+|++|+..|+..||..|..++||+. +.+||..+||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 467889999999999999999999999999 89999999999999999999999999973
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=5.4e-16 Score=128.31 Aligned_cols=62 Identities=31% Similarity=0.327 Sum_probs=52.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 86 RINISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 86 ~~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
...+.+|+|+.|+.+|+.+||..|..++||+. +.+||..+||+++||+|||||||+|+|+..
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 34567899999999999999999999999999 999999999999999999999999999754
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.6e-15 Score=108.41 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHh---hCCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHHhHHHH
Q 042627 96 RLTIEQSRLLEDSFK---LHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDC 152 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~---~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~ 152 (237)
+|+.+|+.+|+.+|. .++||+. +.+||..+||+++||++||||||+|+|+...++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 9999999 99999999999999999999999999987655443
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.41 E-value=4.8e-14 Score=120.36 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=51.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhC---------------------CCCccchhhccchHHHHH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLN---------------------LEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~Lg---------------------L~~rQVkvWFQNRRak~K 144 (237)
.+.||.|+.|+..|+.+||..|..++||+. |++||..++ |++.+|++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 466889999999999999999999999998 999999999 999999999999999987
Q ss_pred H
Q 042627 145 L 145 (237)
Q Consensus 145 r 145 (237)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=98.47 Aligned_cols=53 Identities=28% Similarity=0.293 Sum_probs=49.0
Q ss_pred ccCCHHHHHHHHHHHhh---CCCCCH--HHHHHHHhCCCCccchhhccchHHHHHHHH
Q 042627 95 LRLTIEQSRLLEDSFKL---HTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQ 147 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~---~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~Krkq 147 (237)
..|+.+++.+|+.+|.. ++||+. +.+||.++||++.||++||||||.|+++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 35899999999999988 999999 999999999999999999999999998653
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=94.70 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHH
Q 042627 99 IEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRAR 142 (237)
Q Consensus 99 ~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak 142 (237)
.+|+..|+.+|..+++|+. +..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999 9999999999999999999999974
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.23 E-value=3.1e-12 Score=110.89 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=50.7
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhC---------------------CCCccchhhccchHHHH
Q 042627 87 INISGRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLN---------------------LEPRQVEVWFQNRRART 143 (237)
Q Consensus 87 ~~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~Lg---------------------L~~rQVkvWFQNRRak~ 143 (237)
..+.||.|+.|++.|+.+||..|..++||+. |++||..+| |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3456888999999999999999999999998 999999988 89999999999999864
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.22 E-value=2.1e-12 Score=117.68 Aligned_cols=54 Identities=33% Similarity=0.588 Sum_probs=50.7
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 91 GRKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
++.++.|+.+|+..||+.|+.++||+. |++||+++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 456778999999999999999999999 999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.02 E-value=1e-11 Score=79.04 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=21.1
Q ss_pred ccchhhccchHHHHHHHHhHHHHHH
Q 042627 130 RQVEVWFQNRRARTKLKQNEVDCEF 154 (237)
Q Consensus 130 rQVkvWFQNRRak~Krkq~~~~~~~ 154 (237)
+||+|||||||+|||+++.+..++.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~ 25 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDI 25 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHH
Confidence 6999999999999999887655544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.74 E-value=0.019 Score=41.02 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCCCH--HHHHHHHhCCCCccchhhcc
Q 042627 101 QSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQ 137 (237)
Q Consensus 101 Ql~~LE~~F~~~~~p~~--r~~LA~~LgL~~rQVkvWFQ 137 (237)
-.+.|+++|..++.+.. ...|+.+..|+..||+.||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 34689999999999998 99999999999999999994
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.13 E-value=0.86 Score=33.62 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=24.4
Q ss_pred HHHHHHHHhHH----HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhc
Q 042627 140 RARTKLKQNEV----DCEFLKKCCESLTDENKRLKKELQELQSAKA 181 (237)
Q Consensus 140 Rak~Krkq~~~----~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~~ 181 (237)
|++.|+++.+. ..+.|...+..|+.+...|+.|+..|+.+.+
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444433 3344666666666666666667777766553
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.85 E-value=0.097 Score=38.08 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=30.3
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhcc
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQ 137 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQ 137 (237)
|..|+.++....-..+... ... ..++|+.+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~--~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS--DGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG--GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc--CCChHHHHHHHHCcCHHHHHHHHH
Confidence 3568888876555555321 012 78999999999999999974
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.73 E-value=1.7 Score=31.39 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHH----HHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 140 RARTKLKQNEVDC----EFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 140 Rak~Krkq~~~~~----~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
|++.|+++.+.+. +.|...+..|+.+...|+.|+..|+.
T Consensus 29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443332 33444444444444444444444444
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.62 E-value=1.9 Score=28.42 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=32.8
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhcc
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQ 137 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQ 137 (237)
|..|+.++...+...+........ ..++|+++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 457899888777555554432223 78999999999999999964
No 84
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.32 E-value=1.7 Score=29.06 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
..+.+.|+..++.|+.+...|++++++|++..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998754
No 85
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.81 E-value=3 Score=28.67 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 150 VDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 150 ~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
.....|....+.|..+|..|..++..|+...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788889999999999999998743
No 86
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.49 E-value=4.9 Score=27.10 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
+...+.|...+..|..+...|+.|+..|+..
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555543
No 87
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=77.46 E-value=5.7 Score=26.50 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 140 RARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 140 Rak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
|++.|++. -.+.|......|..||..|..++..|...
T Consensus 15 rSR~RKk~---~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 15 ESRRKKKE---YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 34445556778899999999998888763
No 88
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=77.22 E-value=2.8 Score=31.43 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=38.7
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 92 RKKLRLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 92 R~Rt~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
++|.+||.++...+-..+.... .. ..+||+.+|++...|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g--~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP--DLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT--TSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC--CCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4677899999887777775442 23 55899999999999999998876643
No 89
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.63 E-value=8.3 Score=26.30 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=13.4
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 151 DCEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 151 ~~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
+.+.|...+..|..+...|+.|+..|+.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555544
No 90
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.57 E-value=7.9 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=19.7
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 152 CEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 152 ~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
...|....+.|..+|..|+.++..|+...
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777654
No 91
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.35 E-value=3.8 Score=29.03 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhc
Q 042627 91 GRKKLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWF 136 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWF 136 (237)
++.+..|+.++....-..+... ....++|+.+|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g---~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG---ESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT---CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC---CCHHHHHHHHCcCHHHHHHHH
Confidence 4456789998866555555422 127789999999999999996
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.96 E-value=10 Score=25.89 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
......|....+.|..+|..|+.++..|....
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677889999999999999999998743
No 93
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=73.84 E-value=12 Score=26.68 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
+++-+.||..+..|.+.|.+|+.|+.-||...
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34667899999999999999999999999975
No 94
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.12 E-value=14 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=16.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 152 CEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 152 ~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
...|....+.|..+|..|+.++..|+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666665553
No 95
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.98 E-value=13 Score=27.21 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhcCCCCchhhccccC
Q 042627 145 LKQNEVDCEFLKKCCESLTDENKRLKKELQELQSAKAGASSPLFIQLQKA 194 (237)
Q Consensus 145 rkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~~~~~~~~~~~~~~~ 194 (237)
|...+.....+....+.|..||..|+.++++|....... -.++.++|..
T Consensus 31 R~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L-r~ll~~~p~~ 79 (87)
T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL-RNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCcHH
Confidence 445555666677788899999999999999998754110 2344555554
No 96
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=69.93 E-value=14 Score=26.94 Aligned_cols=34 Identities=35% Similarity=0.302 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 147 QNEVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 147 q~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
..-.+++.|....+.|.+|+..|+.++++|+.+.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999853
No 97
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.64 E-value=15 Score=24.81 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 145 LKQNEVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 145 rkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
....+.+.+.|...+..|..+...|+.|+..|+...
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777889999999999999999999998753
No 98
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=69.51 E-value=3 Score=25.50 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchH
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
.++.++...+...+... ....+||+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g---~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG---HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT---CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC---CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35666666555555432 1278899999999999999997543
No 99
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.15 E-value=16 Score=24.41 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 150 VDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 150 ~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
.....|....+.|..+|..|+.++..|+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788899999999999999998754
No 100
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=69.12 E-value=13 Score=26.63 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 144 KLKQNEVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 144 Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
-+...+.....+....+.|..||..|+.++..|....
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666788888999999999999999998753
No 101
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=65.65 E-value=14 Score=27.31 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
+.+...|..+.+.|..|+.++.+|...++..
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667777777777777777777653
No 102
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.12 E-value=9.1 Score=25.83 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=27.6
Q ss_pred HHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 144 KLKQNEVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 144 Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
+....+...+.|...+..|..+...|+.|+..|+...
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777789999999999999999998887643
No 103
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.59 E-value=15 Score=25.81 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
+.....|....+.+..||..|+.++..|...
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566667777777777666653
No 104
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.55 E-value=18 Score=26.68 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=23.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhcCCCCchhhccccCcCCCCCCCCC
Q 042627 153 EFLKKCCESLTDENKRLKKELQELQSAKAGASSPLFIQLQKAATCPSCEKIM 204 (237)
Q Consensus 153 ~~Lk~~~~~l~~en~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~CpsC~~~~ 204 (237)
..++.....|..+...++.++..+..... ++.. ....||.|++.-
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~-----~l~~--~g~~CPvCgs~l 57 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIE-----ELKK--AKGKCPVCGREL 57 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTT--CSEECTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhc--CCCCCCCCCCcC
Confidence 33444455555555566666555554321 1100 134599998754
No 105
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=62.14 E-value=9.1 Score=27.02 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchH
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
.++..+..+|.-.|-. .. ..++|..||++...|+.+...=|
T Consensus 37 ~L~~~~r~vl~l~~~~----g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677777777765522 12 78999999999999998875433
No 106
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.76 E-value=7.8 Score=33.79 Aligned_cols=50 Identities=8% Similarity=0.038 Sum_probs=27.0
Q ss_pred CccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 129 PRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 129 ~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
+++++.-++.+..+....+....++.|+.....++.|..+|+.|++.|+.
T Consensus 47 ~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 47 HAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp -----CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444422222333333444555666777777777888888887777776
No 107
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=60.23 E-value=6.4 Score=30.33 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCCH---HHHHHHHhCCCCccchhhccchHHHHHHHHhHH
Q 042627 103 RLLEDSFKLHTTLNS---KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEV 150 (237)
Q Consensus 103 ~~LE~~F~~~~~p~~---r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 150 (237)
.++.-.|+.++||.. +.. =.|||-+||.+|.+.
T Consensus 16 RiIkiLyQSNPyP~peGTRqa---------------RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQA---------------RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTTT---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchhh---------------hHhHHHHHHHHHHHH
Confidence 445556889999987 321 159999999877543
No 108
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=60.15 E-value=17 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=20.5
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 155 LKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
|....+.|..+|..|+.|+..|+++.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34455678899999999999999864
No 109
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=60.10 E-value=12 Score=26.58 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCCCCCH---HHHHHHHhCCCCccchhhccchHHHHHHHHhHH
Q 042627 102 SRLLEDSFKLHTTLNS---KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEV 150 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~---r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~ 150 (237)
+.++.-.|+.++||.+ +.. =.|||-+||.+|.+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrqa---------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQA---------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchHH---------------HHHHHHHHHHHHHHH
Confidence 3455666899999987 432 148999999877544
No 110
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=59.91 E-value=9.2 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=34.7
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
-..++..+..+|.-++.-.. ..++|..+|++...|+.+..+=+.|.+
T Consensus 19 ~~~Lt~~e~~vl~l~~~g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQGLP----NKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGGSCHHHHHHHHHHTTTCC----HHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 34589999988887432211 889999999999999988765444444
No 111
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=59.55 E-value=20 Score=25.14 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=27.9
Q ss_pred ccchHHHHH-HHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 136 FQNRRARTK-LKQNEVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 136 FQNRRak~K-rkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
.|||-+... +...+.....|......|..++..|..|+..|+..
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466555433 33334455556667777777888888888877764
No 112
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=59.53 E-value=16 Score=22.53 Aligned_cols=29 Identities=41% Similarity=0.373 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 150 VDCEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 150 ~~~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
++++.|-+.++.-.+|..+|+.++.+|..
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45666777777777888888888888764
No 113
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=58.40 E-value=18 Score=26.13 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 042627 145 LKQNEVDCEFLKKCCESLTDENKRLKKELQELQ 177 (237)
Q Consensus 145 rkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~ 177 (237)
.+..+.....+....+.|+.+|..|+.++++|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444555555667777777777766664
No 114
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=57.74 E-value=14 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=34.3
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
...+++.+..+|..++... ...++|..+|++...|+.++..=+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3458899999887743222 1788999999999999988865444443
No 115
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.60 E-value=13 Score=21.99 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccc
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQN 138 (237)
.++.++...+...+.... ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~---s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV---SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC---CHHHHHHHHCcCHHHHHHHHhh
Confidence 467777655555554321 1778999999999999999853
No 116
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.59 E-value=17 Score=27.35 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
..++..|++.++.|..|+++|++++..|....
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999998888754
No 117
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.20 E-value=8.7 Score=25.49 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccc
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQN 138 (237)
.+++.+..+|...|-...+-.. -.++|..+|++...|+.+...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4788888888888743323333 889999999999999987653
No 118
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=57.13 E-value=22 Score=26.77 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=15.2
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 151 DCEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 151 ~~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
....|....+.|+.||.+|..|++.-+.
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344555555666666666666554443
No 119
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.00 E-value=11 Score=27.03 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
..++..+..+|.-+++--. ..++|..||++...|+.+..+=+.|.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT----NKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC----HHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3589999999887644333 789999999999999988765555544
No 120
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=56.03 E-value=19 Score=25.63 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=10.9
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHH
Q 042627 156 KKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 156 k~~~~~l~~en~~l~~e~~~l~~ 178 (237)
+.....+..|++.|+.++.+|+.
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555543
No 121
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=54.96 E-value=28 Score=25.35 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=35.8
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
...++..+..+|.-.++--. ..++|..|++++..|+.+.++=+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s----~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL----VTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC----HHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 44689999999977654322 789999999999999998875444443
No 122
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.35 E-value=13 Score=24.20 Aligned_cols=41 Identities=17% Similarity=0.010 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchH
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
.+++.+..+|...|-.. . ..++|..+|++...|+.|...=+
T Consensus 15 ~L~~~~r~il~l~~~~g----~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG----LSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SSCHHHHHHHHHHHTSC----CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47788888888766322 2 78999999999999998875333
No 123
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=54.35 E-value=16 Score=24.52 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccc
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQN 138 (237)
.+++.+..+|...|-....... -.++|..+|++...|+.|...
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4788899999888752111122 789999999999999988753
No 124
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=54.11 E-value=22 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 156 KKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 156 k~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
....+.|..+|..|+.|+..|+++.
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3345678999999999999999864
No 125
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=53.08 E-value=12 Score=27.07 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=31.3
Q ss_pred CccCCHHHHHHHHHHHhhC--CCCCH---HHHHHHHhCCCCccchhhcc
Q 042627 94 KLRLTIEQSRLLEDSFKLH--TTLNS---KQALAEQLNLEPRQVEVWFQ 137 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~--~~p~~---r~~LA~~LgL~~rQVkvWFQ 137 (237)
+.+|+.++....-..+... .+... ..++|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4578998876555544332 23332 78899999999999999964
No 126
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=51.19 E-value=38 Score=24.58 Aligned_cols=32 Identities=31% Similarity=0.275 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 148 NEVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 148 ~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
.-++++.|....+.+.+|...|+.++.+|+.+
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999999875
No 127
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=50.56 E-value=13 Score=24.98 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
.+++.+..+|.-+|..-. ..++|..+|++...|+.++..=+.|.+
T Consensus 16 ~L~~~e~~vl~l~~~g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVVAGLP----NKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHTTTCC----HHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 367777777766432111 789999999999999988765444444
No 128
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=50.19 E-value=16 Score=27.32 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccc
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQN 138 (237)
.+++.+..+|. .|-. .. ..++|..||++...|+.+...
T Consensus 109 ~L~~~~r~v~~-~~~~----g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 46666666666 3221 12 789999999999999987753
No 129
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=49.67 E-value=23 Score=27.33 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=37.1
Q ss_pred CCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHH----Hh--CCCCccchhhccchH
Q 042627 91 GRKKLRLTIEQSRLLEDSF-KLHTTLNSKQALAE----QL--NLEPRQVEVWFQNRR 140 (237)
Q Consensus 91 rR~Rt~~t~~Ql~~LE~~F-~~~~~p~~r~~LA~----~L--gL~~rQVkvWFQNRR 140 (237)
+++|.++|.+|...+-.++ +.++... ..+||+ ++ +++...|.-|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~-q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG-QQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC-HHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 6789999999999999888 4544332 556677 78 778888998986643
No 130
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=48.60 E-value=25 Score=24.76 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=12.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 155 LKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
|+...+.|..|.+.|+.++..|+.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554
No 131
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=46.33 E-value=23 Score=24.66 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHH
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRAR 142 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak 142 (237)
.+++.+..+|...|-....-.. -.++|..+|++...|+.+...=+.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRK 65 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4788888888887742211122 7899999999999999987533333
No 132
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=46.05 E-value=46 Score=28.09 Aligned_cols=33 Identities=36% Similarity=0.315 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 147 QNEVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 147 q~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
..-.+++.|....+.+.+|...|+.++.+|+.+
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999999999999999874
No 133
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.62 E-value=13 Score=26.14 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=34.9
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
-..++..+..+|.-++.--. ..++|..||++...|+.+..+=+.|.+
T Consensus 27 l~~Lt~~e~~vl~l~~~g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGYS----NQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTCC----TTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34688999998877543222 678999999999999998875555544
No 134
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=45.50 E-value=26 Score=20.26 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=18.4
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 155 LKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
|..-...|..||.+|+..+++|.+
T Consensus 4 lnallasleaenkqlkakveella 27 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455688999999999998876
No 135
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=45.06 E-value=48 Score=19.91 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=18.9
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 157 KCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 157 ~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
...+.|..+|..|+.|+..|+.+.
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345668888999999999998864
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=44.41 E-value=64 Score=23.78 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
.+++.+..+|.-.|-.. . -.++|..+|++...|+.+...=|.+-|
T Consensus 25 ~L~~~~r~vl~l~~~~g----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED----YSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GSCHHHHHHHHHHHTSC----CCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46777777777665322 2 789999999999999998865444444
No 137
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=44.05 E-value=68 Score=23.76 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
.+++.+..++.-.|.... ...++|..+|++...|+.|...=|.+.+
T Consensus 22 ~L~~~~r~vl~l~y~~g~---s~~EIA~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY---SLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC---CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478888888877654321 1789999999999999999875554444
No 138
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=44.02 E-value=72 Score=23.21 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhcc
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQ 137 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQ 137 (237)
.+++.|..++.-.|-....-.. -.++|..+|++...|+....
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4677788888777754333333 88999999999999988654
No 139
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=43.83 E-value=43 Score=27.96 Aligned_cols=74 Identities=5% Similarity=-0.094 Sum_probs=42.3
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
++.|+.+|+..|.. ....+.+|++-.+|+..+.++ ......-.+...+.|..+.+.|+.....|+.-+
T Consensus 42 ~R~y~~~~~~~l~~-----------i~~l~~~g~~l~~i~~~~~~~-~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 42 YRYYTDSQLIHLDL-----------IKSLKYIGTPLEEMKKAQDLE-MEELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp CEEEETGGGGHHHH-----------HHHHHHTTCCHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHH-----------HHHHHHCCCCHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888777753 223578899988888888776 332233333344444444445555444454444
Q ss_pred HHHHHH
Q 042627 174 QELQSA 179 (237)
Q Consensus 174 ~~l~~~ 179 (237)
..+...
T Consensus 110 ~~~~~~ 115 (278)
T 1r8e_A 110 KRMKRQ 115 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 140
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.20 E-value=46 Score=20.09 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=19.7
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 155 LKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
|....+.|..+|..|+.|+..|+.+.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33445668888999999999998864
No 141
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.30 E-value=60 Score=23.39 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 042627 169 LKKELQELQS 178 (237)
Q Consensus 169 l~~e~~~l~~ 178 (237)
|..++++|+.
T Consensus 53 L~~en~qLk~ 62 (81)
T 2jee_A 53 LERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 142
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.41 E-value=29 Score=24.70 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=33.2
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHH
Q 042627 93 KKLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRAR 142 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak 142 (237)
....||..+..+|.-.++-.. ..++|..|+++.+.|+....+=+.|
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~s----~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGFT----NQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCC----HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345689999999987763322 7899999999999999876543333
No 143
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.91 E-value=38 Score=22.30 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
+.+++.|+..++.|..+++.|+.++
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666665555544
No 144
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.15 E-value=1.2e+02 Score=23.21 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=23.0
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhcc
Q 042627 93 KKLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQ 137 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQ 137 (237)
....|+.+++..|...- ..+.+|++-..|+..+.
T Consensus 37 g~R~Y~~~dl~~l~~I~-----------~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 37 GVRKFGAEDLRWILFTR-----------QMRRAGLSIEALIDYLA 70 (142)
T ss_dssp SCBCBCHHHHHHHHHHH-----------HHHHTTCCHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHHHH-----------HHHHcCCCHHHHHHHHH
Confidence 35678999998886532 23667777777766664
No 145
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=38.37 E-value=69 Score=24.39 Aligned_cols=74 Identities=8% Similarity=-0.061 Sum_probs=44.7
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
...|+.+++..|... ...+.+|++..+|+.++........ ....-.+.|....+.+.++...|+...
T Consensus 36 ~R~Y~~~dl~~l~~I-----------~~lr~~G~sl~eI~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~~~ 102 (135)
T 1q06_A 36 YRTYTQQHLNELTLL-----------RQARQVGFNLEESGELVNLFNDPQR--HSADVKRRTLEKVAEIERHIEELQSMR 102 (135)
T ss_dssp CEECCHHHHHHHHHH-----------HHHHHTTCCHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-----------HHHHHCCCCHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999888642 2247788888888888864321110 011123445556666666666666666
Q ss_pred HHHHHHh
Q 042627 174 QELQSAK 180 (237)
Q Consensus 174 ~~l~~~~ 180 (237)
..|....
T Consensus 103 ~~L~~~~ 109 (135)
T 1q06_A 103 DQLLALA 109 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 146
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=38.29 E-value=28 Score=23.29 Aligned_cols=41 Identities=7% Similarity=0.008 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchH
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..++.+.+..+....... ..+||..+|++...|.-|-++++
T Consensus 9 ~~~~g~~lr~~R~~~glt-----q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-----QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-----HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-----HHHHHHHhCcCHHHHHHHHcCCC
Confidence 357888888776654333 78999999999999999998765
No 147
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.51 E-value=1e+02 Score=23.88 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHH
Q 042627 93 KKLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKE 172 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e 172 (237)
.+..|+.+++..|...- ..+.+|++-.+|+..+...+.... ....-.+.|....+.+.++...|+..
T Consensus 51 g~R~Y~~~dl~~l~~I~-----------~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~~ 117 (148)
T 3gpv_A 51 GDRIFNEEALKYLEMIL-----------CLKNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQQEANVLQLIQDTEKN 117 (148)
T ss_dssp CCEEBCHHHHHHHHHHH-----------HHHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHHH-----------HHHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999998886432 246778888888877764332111 11222334555555666666666666
Q ss_pred HHHHHH
Q 042627 173 LQELQS 178 (237)
Q Consensus 173 ~~~l~~ 178 (237)
++.|..
T Consensus 118 ~~~L~~ 123 (148)
T 3gpv_A 118 LKKIQQ 123 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 148
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=35.97 E-value=48 Score=21.88 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=17.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 152 CEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 152 ~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
|+.|-++-+.|+.||--|++|++.-..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 455666666777777777777665443
No 149
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.34 E-value=36 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccc
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQN 138 (237)
.+++.+..+|.-.|-. .. ..++|..||++...|+.+...
T Consensus 187 ~L~~~~r~vl~l~~~~----g~s~~EIA~~lgis~~~V~~~~~r 226 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----ELPAKEVAKILETSVSRVSQLKAK 226 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4677777777776632 23 789999999999999988753
No 150
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.31 E-value=54 Score=19.88 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=10.4
Q ss_pred HHHHhHhhHHHHHHHHHHHH
Q 042627 155 LKKCCESLTDENKRLKKELQ 174 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~ 174 (237)
.++.++.|+.+|..|..|+.
T Consensus 12 ~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555543
No 151
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=34.85 E-value=0.69 Score=37.11 Aligned_cols=30 Identities=0% Similarity=-0.078 Sum_probs=21.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH
Q 042627 88 NISGRKKLRLTIEQSRLLEDSFKLHTTLNS 117 (237)
Q Consensus 88 ~~~rR~Rt~~t~~Ql~~LE~~F~~~~~p~~ 117 (237)
.+.+|.|+.|+..|++.|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456888999999999999999999999875
No 152
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.61 E-value=90 Score=24.05 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=26.9
Q ss_pred HHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 145 LKQNEVDCEFLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 145 rkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
.+..+.+...|+...+....|.++|+++++.|....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 345566777777788888888888888888887755
No 153
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.79 E-value=60 Score=21.96 Aligned_cols=25 Identities=36% Similarity=0.223 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
+...+.|+..+..|..+...|+.++
T Consensus 36 e~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 36 EDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666666665554
No 154
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=33.58 E-value=31 Score=25.69 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHH
Q 042627 97 LTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRA 141 (237)
Q Consensus 97 ~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRa 141 (237)
++.+++..|....... ..+||..+|++...|..|-++++.
T Consensus 71 ~~~~~l~~~R~~~gls-----q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 71 VAPEFIVKVRKKLSLT-----QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHTTCC-----HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcCCC-----HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 4455555554333222 678999999999999999987653
No 155
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.53 E-value=1.2e+02 Score=21.69 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHH
Q 042627 162 LTDENKRLKKELQ 174 (237)
Q Consensus 162 l~~en~~l~~e~~ 174 (237)
|..||.+|+.|..
T Consensus 53 L~~en~qLk~E~~ 65 (81)
T 2jee_A 53 LERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555443
No 156
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.27 E-value=80 Score=19.29 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=18.2
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 155 LKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
|...-+.|..+|..|+.|+..|+...
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33445567778888888888888754
No 157
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.70 E-value=37 Score=24.89 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccc
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQN 138 (237)
..++.++...+...+.... ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~---s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV---SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC---CHHHHHHHHCcCHHHHHHHHHc
Confidence 4678888777776665321 1778899999999999999964
No 158
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=32.18 E-value=86 Score=22.71 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=41.5
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
...|+.+++..|.... . .+.+|++..+|+.++..... .....|..+.+.+.++...|+...
T Consensus 37 ~R~Y~~~dl~~l~~I~----------~-lr~~G~sl~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~~~ 97 (108)
T 2vz4_A 37 HRRYSDADLDRLQQIL----------F-YRELGFPLDEVAALLDDPAA--------DPRAHLRRQHELLSARIGKLQKMA 97 (108)
T ss_dssp CEEBCHHHHHHHHHHH----------H-HHHTTCCHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHHH----------H-HHHCCCCHHHHHHHHhCCcH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999988886432 2 46778888888888765321 112345556666677777776666
Q ss_pred HHHHHH
Q 042627 174 QELQSA 179 (237)
Q Consensus 174 ~~l~~~ 179 (237)
+.|...
T Consensus 98 ~~l~~~ 103 (108)
T 2vz4_A 98 AAVEQA 103 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 159
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.13 E-value=76 Score=19.15 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=17.8
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHh
Q 042627 158 CCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 158 ~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
..+.|-.+|..|+.|+..|+.+.
T Consensus 9 KvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 9 KLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccHHHHHHHHHHHHHh
Confidence 44567888888888888888753
No 160
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.78 E-value=1e+02 Score=19.69 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 147 QNEVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 147 q~~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
|.+.+...|.+.+..|++|..+|..|+
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 344455556666667777777776664
No 161
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=31.76 E-value=29 Score=27.02 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-.+|.+|..=.
T Consensus 34 l~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 34 VNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 4445566888888777 99999999999999999999976544
No 162
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=30.99 E-value=42 Score=27.53 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=35.5
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
...+|+.+..+|.-.++-.. -.++|..||++++.|+...++=+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~s----~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGKT----ASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTCC----HHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45689999998876543222 789999999999999998776555544
No 163
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=30.94 E-value=1.2e+02 Score=23.48 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=40.8
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
+..|+.+++..|... ...+.+|++-.+|+..+..... ......+.|..+.+.|.++..+|+.-+
T Consensus 40 ~R~Y~~~dl~~l~~I-----------~~lr~~G~sl~~I~~~l~~~~~-----~~~~~~~~L~~q~~~L~~~i~~l~~~l 103 (146)
T 3hh0_A 40 HRLYTKDDLYVLQQI-----------QSFKHLGFSLGEIQNIILQRDI-----ETEVFLRQMHFQREVLLAEQERIAKVL 103 (146)
T ss_dssp CEEBCHHHHHHHHHH-----------HHHHHTTCCHHHHHHHHTSSEE-----EHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeeCHHHHHHHHHH-----------HHHHHcCCCHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999888643 2246677887777777765421 111223344555555666666666655
Q ss_pred HHHHH
Q 042627 174 QELQS 178 (237)
Q Consensus 174 ~~l~~ 178 (237)
..|..
T Consensus 104 ~~l~~ 108 (146)
T 3hh0_A 104 SHMDE 108 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 164
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.65 E-value=1e+02 Score=24.00 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=11.9
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHH
Q 042627 152 CEFLKKCCESLTDENKRLKKELQELQ 177 (237)
Q Consensus 152 ~~~Lk~~~~~l~~en~~l~~e~~~l~ 177 (237)
++.+++..+.|+.++..|+.++.+|.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 165
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.53 E-value=1.5e+02 Score=21.15 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=21.5
Q ss_pred chHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHH
Q 042627 138 NRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKE 172 (237)
Q Consensus 138 NRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e 172 (237)
+||.+.+-.+...+.+.|++-.+.|..=..+|+.=
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~m 47 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEM 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 46777777777777777776665554444444333
No 166
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.43 E-value=1e+02 Score=19.42 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHhHhhHHHHHHHHH
Q 042627 147 QNEVDCEFLKKCCESLTDENKRLKK 171 (237)
Q Consensus 147 q~~~~~~~Lk~~~~~l~~en~~l~~ 171 (237)
..+..+..|......|+.||.+|++
T Consensus 14 ~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334444455555666666666655
No 167
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.27 E-value=15 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|.-|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 67899999999999999998754
No 168
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=30.00 E-value=30 Score=25.95 Aligned_cols=43 Identities=7% Similarity=0.011 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 101 QSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 101 Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
-+......|.+..|-.. ..+||+..|++..-|-..|.||-.=.
T Consensus 14 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~ 57 (195)
T 3ppb_A 14 ILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLL 57 (195)
T ss_dssp HHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 34455666888888777 99999999999999999999976654
No 169
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.75 E-value=1.3e+02 Score=21.77 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=41.7
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKEL 173 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~ 173 (237)
+..|+.+++..|..... .+.+|++-.+|+..+..... ...+.|..+.+.+.++..+|+...
T Consensus 38 ~R~Y~~~dl~~l~~I~~-----------l~~~G~~l~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~~~~ 98 (109)
T 1r8d_A 38 YRLYSDADLERLQQILF-----------FKEIGFRLDEIKEMLDHPNF--------DRKAALQSQKEILMKKKQRMDEMI 98 (109)
T ss_dssp CEEBCHHHHHHHHHHHH-----------HHHTTCCHHHHHHHHHCTTS--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHHHH-----------HHHCCCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999988865322 35667777777766654211 113455666666777777777766
Q ss_pred HHHHHH
Q 042627 174 QELQSA 179 (237)
Q Consensus 174 ~~l~~~ 179 (237)
+.|...
T Consensus 99 ~~l~~~ 104 (109)
T 1r8d_A 99 QTIDRT 104 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 170
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=29.75 E-value=1.2e+02 Score=20.69 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=20.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHh
Q 042627 154 FLKKCCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 154 ~Lk~~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
.|.+-+..|.+|.+.||++++.|....
T Consensus 31 QLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 31 QLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 355556678888888888888888765
No 171
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.34 E-value=28 Score=22.06 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
..++|..+|+++..|+.+..+=+.|.+
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 578999999999999988775555444
No 172
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.15 E-value=92 Score=18.80 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.1
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHh
Q 042627 158 CCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 158 ~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
..+.|-.+|..|+.|+..|+.+.
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 44567888888999999888764
No 173
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=29.07 E-value=16 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCccchhhccchHH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRRA 141 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRRa 141 (237)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 788999999999999999987543
No 174
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.00 E-value=72 Score=24.28 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccc
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQN 138 (237)
..++.++...+...+... ....++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G---~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG---VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT---CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777766666532 11678899999999999999864
No 175
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=28.86 E-value=45 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 103 RLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 103 ~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
......|.+..|-.. ..+||+..|++..-|-..|.+|-.=..
T Consensus 24 ~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 66 (206)
T 3kz9_A 24 EIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVD 66 (206)
T ss_dssp HHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 344555888888877 999999999999999999999765443
No 176
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.29 E-value=50 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=13.5
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 155 LKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
+...++.|..||..|+.++.+|..
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777777777666543
No 177
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=28.19 E-value=28 Score=26.25 Aligned_cols=43 Identities=2% Similarity=-0.037 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+....+.|.+..|-.. ..+||+..|++..-|-..|.||-.=..
T Consensus 16 l~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~ 59 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQ 59 (197)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHH
Confidence 4455666888888877 999999999999999999998766443
No 178
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=28.17 E-value=35 Score=26.08 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-.+|.||-.=.
T Consensus 18 l~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 3344555888888877 99999999999999999999876544
No 179
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.46 E-value=60 Score=27.01 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=35.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHHH
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTKL 145 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~Kr 145 (237)
..++..+..+|.-.++.-. -.++|..||+++..|++...+=|.|-|.
T Consensus 196 ~~L~~~erevl~L~~~G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKGLS----SKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTTCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4689999888877653332 7899999999999999987755555443
No 180
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=27.42 E-value=59 Score=24.99 Aligned_cols=40 Identities=10% Similarity=-0.053 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchH
Q 042627 97 LTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 97 ~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
++..+..+|.-.|-. .. -.++|..+|++...|+.+...=|
T Consensus 141 L~~~~r~vl~l~~~~----g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 141 LPEDLRMAITLRELD----GLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp SCHHHHHHHHHHHTT----CCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc----CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554422 22 78999999999999998875333
No 181
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.35 E-value=17 Score=23.36 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCCccchhhccchHH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRRA 141 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRRa 141 (237)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 688999999999999999987654
No 182
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=27.34 E-value=82 Score=25.58 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCCccCCHHHH-HHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 92 RKKLRLTIEQS-RLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 92 R~Rt~~t~~Ql-~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+.+...+.+++ ......|.+..|-.. ...||+.+|++..-|-..|.||-.=.
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 64 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELL 64 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcCCHHHHH
Confidence 34445566553 345566888888777 99999999999999999999976544
No 183
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=26.60 E-value=67 Score=24.56 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-.+|.||-.=.
T Consensus 20 l~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~ 62 (203)
T 3ccy_A 20 IERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVL 62 (203)
T ss_dssp HHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHH
Confidence 4445566888988888 99999999999999999999876543
No 184
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.50 E-value=19 Score=23.56 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 68899999999999999998765
No 185
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.46 E-value=92 Score=23.65 Aligned_cols=7 Identities=43% Similarity=1.199 Sum_probs=0.0
Q ss_pred chhhccc
Q 042627 132 VEVWFQN 138 (237)
Q Consensus 132 VkvWFQN 138 (237)
+..||+.
T Consensus 9 aE~~y~~ 15 (129)
T 3tnu_B 9 AESWYQT 15 (129)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3344444
No 186
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.14 E-value=91 Score=21.73 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 042627 144 KLKQNEVDCEFLKKCCESLTDENKRLKKELQEL 176 (237)
Q Consensus 144 Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l 176 (237)
-.+..+.+...|....+.|..++..|+.++..|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667777778888888888777654
No 187
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.10 E-value=18 Score=24.36 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|.-|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 67899999999999999997655
No 188
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.09 E-value=33 Score=26.32 Aligned_cols=42 Identities=7% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-.+|.+|-.=.
T Consensus 37 l~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll 79 (218)
T 3dcf_A 37 IKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVL 79 (218)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3455566888888777 99999999999999999999876543
No 189
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=26.04 E-value=56 Score=24.70 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 101 QSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 101 Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
-+....+.|.+..|-.. ..+||+..|++..-|-..|.||-.=.
T Consensus 21 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 64 (211)
T 3him_A 21 IRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLL 64 (211)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHH
Confidence 34455566888888877 99999999999999999999876543
No 190
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.89 E-value=1e+02 Score=17.93 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHH
Q 042627 152 CEFLKKCCESLTDENKRLKKELQELQ 177 (237)
Q Consensus 152 ~~~Lk~~~~~l~~en~~l~~e~~~l~ 177 (237)
...||+++..|..|...|+-|+..|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544
No 191
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.78 E-value=76 Score=22.31 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=17.4
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 154 FLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 154 ~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
.|+...+.|..|+..|+.++++.+.+
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35666666777777777777766653
No 192
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=25.65 E-value=59 Score=26.53 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=34.8
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccchHHHHH
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
...+|..+..+|.-.++-.. -.++|..||++++.|+...++=+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~s----~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGKT----MEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTCC----HHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCC----HHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 44699999999866432222 789999999999999988765554443
No 193
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.38 E-value=87 Score=25.87 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=14.0
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 155 LKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
+-..+..|+.+|.+|+++++.|+.
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666654
No 194
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.17 E-value=98 Score=21.78 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=26.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 042627 139 RRARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQEL 176 (237)
Q Consensus 139 RRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l 176 (237)
++|..-.++.+.+...+....+.|+.++..|++++++|
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455566666667777777888888888888877654
No 195
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=25.13 E-value=89 Score=22.36 Aligned_cols=39 Identities=5% Similarity=-0.078 Sum_probs=30.4
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccch
Q 042627 94 KLRLTIEQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVE 133 (237)
Q Consensus 94 Rt~~t~~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVk 133 (237)
-..++..|..+|...+.... ... ..+||..++|+...|.
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~-~gi~qkeLa~~~~l~~~tvt 54 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGN-KGIWSRDVRYKSNLPLTEIN 54 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCT-TCEEHHHHHHHTTCCHHHHH
T ss_pred hcCCCHHHHHHHHHHHHcCC-CCcCHHHHHHHHCCCHHHHH
Confidence 44689999999999987543 234 8899999999987654
No 196
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.98 E-value=1.5e+02 Score=19.36 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 147 QNEVDCEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 147 q~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
..+.+...|...++.|.+-....+.|+..|++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555554
No 197
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.98 E-value=21 Score=23.31 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCCccchhhccchHH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRRA 141 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRRa 141 (237)
..+||+.+|++...|.-|...++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 788999999999999999987543
No 198
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=24.87 E-value=1e+02 Score=18.76 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=16.5
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHh
Q 042627 158 CCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 158 ~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
.-+.|..+|..|+.|+..|+.+.
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 44557777888888888887754
No 199
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=24.55 E-value=68 Score=24.45 Aligned_cols=42 Identities=5% Similarity=-0.054 Sum_probs=34.1
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-..|.+|-.=.
T Consensus 25 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~ 67 (216)
T 3qqa_A 25 KAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLF 67 (216)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSCSCCSHHHHH
T ss_pred HHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHHhcCCHHHHH
Confidence 3445556888888877 99999999999999999999876543
No 200
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=24.34 E-value=46 Score=25.42 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRA 141 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRa 141 (237)
+......|.+..|-.. ..+||+..|++..-|-..|.||-.
T Consensus 23 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 23 STVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCCHHH
Confidence 3444555888888777 999999999999999999988754
No 201
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.25 E-value=22 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 78899999999999999998764
No 202
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.10 E-value=45 Score=25.01 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+..-.+.|.+..|-.. ..+||+..|++..-|-..|.||..=..
T Consensus 18 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 61 (199)
T 3on2_A 18 LARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLD 61 (199)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHH
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHH
Confidence 3445556877877766 999999999999999999999766543
No 203
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=24.01 E-value=38 Score=25.79 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRAR 142 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak 142 (237)
+......|.+..|-.. ..+||+..|++..-|-.+|.+|-.=
T Consensus 13 l~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 54 (195)
T 2dg7_A 13 KRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREV 54 (195)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGG
T ss_pred HHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 4455566888887777 9999999999999999999887554
No 204
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=24.00 E-value=46 Score=25.03 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+....+.|.+..|-.. ..+||+..|++..-|-..|.||-.=..
T Consensus 13 l~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 56 (199)
T 3qbm_A 13 VAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLAL 56 (199)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHH
Confidence 4455566888888877 999999999999999999998765543
No 205
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.81 E-value=1.2e+02 Score=21.13 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCccchhhccchHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 042627 119 QALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQELQSA 179 (237)
Q Consensus 119 ~~LA~~LgL~~rQVkvWFQNRRak~Krkq~~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~~ 179 (237)
...++.+|++-.+|+..+..+..... .....-.+.|....+.+.++...|+.-...|...
T Consensus 9 I~~lr~lGfsL~eIk~~l~~~~~~~~-~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 9 IRHARQLGFSLESIRELLSIRIDPEH-HTCQESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHCGGG-CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999998865431100 0111223456666666777777776666666653
No 206
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=23.70 E-value=61 Score=24.70 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+....+.|.+..|-.. ..+||+..|++..-+-..|.++-.=..
T Consensus 19 l~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~ 62 (195)
T 2iu5_A 19 AKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLS 62 (195)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 4455566888887777 999999999999999999999766543
No 207
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.48 E-value=1.1e+02 Score=21.55 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=28.9
Q ss_pred CCccCCHHHHHHHHHHHhhC-----CCCCH--HHHHHHHhCC--CCccchhhcc
Q 042627 93 KKLRLTIEQSRLLEDSFKLH-----TTLNS--KQALAEQLNL--EPRQVEVWFQ 137 (237)
Q Consensus 93 ~Rt~~t~~Ql~~LE~~F~~~-----~~p~~--r~~LA~~LgL--~~rQVkvWFQ 137 (237)
....++.+++..|.+.|..- .+.+. ...+.+.+|. +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34568999999999999873 23333 3344556664 5566666653
No 208
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.45 E-value=63 Score=24.00 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccc-hHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQN-RRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQN-RRak~K 144 (237)
+....+.|.+..|-.. ..+||+..|++..-|-..|.| |-.=..
T Consensus 12 l~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~ 56 (191)
T 1sgm_A 12 LHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAI 56 (191)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHH
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHH
Confidence 4455666888888777 999999999999999999997 765543
No 209
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=23.41 E-value=74 Score=23.70 Aligned_cols=43 Identities=9% Similarity=0.007 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+....+.|.+..|-.. ...||+..|++..-|-..|.||-.=..
T Consensus 13 l~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~~F~sK~~L~~ 56 (180)
T 2fd5_A 13 LGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALML 56 (180)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHHHCCCHHHHHH
Confidence 3445556888888777 999999999999999999998665543
No 210
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.38 E-value=23 Score=22.58 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCccchhhccchHH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRRA 141 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRRa 141 (237)
..+||+.+|++...|.-|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 688999999999999999987654
No 211
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=23.05 E-value=42 Score=19.14 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=9.7
Q ss_pred cchHHHHHHHHhH
Q 042627 137 QNRRARTKLKQNE 149 (237)
Q Consensus 137 QNRRak~Krkq~~ 149 (237)
.|||-+|+..|.+
T Consensus 7 RnRRRRWR~Rq~q 19 (26)
T 1etf_B 7 RNRRRRWRERQRA 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4888899877653
No 212
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=23.04 E-value=51 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|.-|...++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 78999999999999999998754
No 213
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.86 E-value=52 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=33.3
Q ss_pred HHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 103 RLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 103 ~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
..-.+.|.+..| .. ..+||+..|++..-|-.+|.||-.=..
T Consensus 20 ~aA~~lf~~~G~-~~t~~~IA~~agvs~~tlY~~F~sK~~L~~ 61 (196)
T 2qwt_A 20 EVAYDTFAAEGL-GVPMDEIARRAGVGAGTVYRHFPTKQALVV 61 (196)
T ss_dssp HHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 344556888888 67 999999999999999999999765543
No 214
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=22.67 E-value=64 Score=24.70 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=34.0
Q ss_pred HHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 103 RLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 103 ~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
......|.+..|-.. ..+||+..|++..-|-.+|.||-.=..
T Consensus 24 ~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 66 (218)
T 3gzi_A 24 LAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFS 66 (218)
T ss_dssp HHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 344555888888877 999999999999999999998765543
No 215
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=22.66 E-value=26 Score=21.89 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhcc
Q 042627 99 IEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQ 137 (237)
Q Consensus 99 ~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQ 137 (237)
.++...+...|.... ...++|+.+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g~---s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMGY---TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTTC---CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHCcCHHHHHHHHH
Confidence 555555555543221 278899999999999999874
No 216
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.55 E-value=25 Score=23.10 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|.-|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 67899999999999999998763
No 217
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=22.30 E-value=65 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+..-...|.+..|-.. ..+||+..|++..-|-.+|.||-.=.
T Consensus 17 l~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (210)
T 2xdn_A 17 IEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELV 59 (210)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhCCHHHHH
Confidence 3444556888888877 99999999999999999999976543
No 218
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=22.21 E-value=26 Score=22.69 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|.-|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 78899999999999999987753
No 219
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=22.01 E-value=56 Score=24.52 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 100 EQSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 100 ~Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
.-+....+.|.+..|-.. ..+||+..|++..-|-..|.||-.=..
T Consensus 15 ~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~ 60 (196)
T 3he0_A 15 QILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLE 60 (196)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHH
Confidence 334556667888888877 999999999999999999998765543
No 220
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=21.90 E-value=71 Score=23.93 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=30.8
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccc
Q 042627 95 LRLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 95 t~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQN 138 (237)
..++.++...+-..+... ....++|+.+|++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~~G---~s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG---VRPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHH
Confidence 358888777666666432 11678999999999999999864
No 221
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.84 E-value=2.3e+02 Score=20.35 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=19.3
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 152 CEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 152 ~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
.......++.|..|.++|+.++.+|+.
T Consensus 47 L~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 47 LREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455667788888888888888765
No 222
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=21.83 E-value=53 Score=26.40 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-.+|.+|..=.
T Consensus 49 l~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 91 (255)
T 3g1o_A 49 LATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVL 91 (255)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 4444555777777666 99999999999999999999876554
No 223
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=21.66 E-value=58 Score=24.79 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=25.9
Q ss_pred HHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 108 SFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 108 ~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
.|.+..|-.. ..+||++.|++..-|-.+|.||-.=.
T Consensus 37 lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 73 (212)
T 3nxc_A 37 LESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMF 73 (212)
T ss_dssp HHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHH
T ss_pred HHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHH
Confidence 4666677767 99999999999999999999976643
No 224
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.55 E-value=75 Score=24.21 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=33.7
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-..|.||-.=.
T Consensus 19 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~ 61 (217)
T 3nrg_A 19 IDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCY 61 (217)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHcCCHHHHH
Confidence 3444555888887766 99999999999999999999976544
No 225
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=21.53 E-value=1.4e+02 Score=22.39 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=25.6
Q ss_pred CCCccCCHHHHHHHHHHHhh-----CCCCCH--HHHHHHHhCCCCc
Q 042627 92 RKKLRLTIEQSRLLEDSFKL-----HTTLNS--KQALAEQLNLEPR 130 (237)
Q Consensus 92 R~Rt~~t~~Ql~~LE~~F~~-----~~~p~~--r~~LA~~LgL~~r 130 (237)
.+|..+|.+|+..|...|.. ..+.+. ...+.+.||..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 35667999999999999986 223443 3444566776553
No 226
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.51 E-value=85 Score=22.14 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHhCCCCccchhhccc
Q 042627 96 RLTIEQSRLLEDSFKLHTTLNSKQALAEQLNLEPRQVEVWFQN 138 (237)
Q Consensus 96 ~~t~~Ql~~LE~~F~~~~~p~~r~~LA~~LgL~~rQVkvWFQN 138 (237)
.++.++...+...+... + ...++|+.+|++...|..|+..
T Consensus 17 ~~s~~~r~~i~~~~~~g-~--s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG-I--RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHTT-C--CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-C--CHHHHHHHHCcCHHHHHHHHHH
Confidence 57888777666666532 1 1678899999999999999864
No 227
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=21.45 E-value=64 Score=24.52 Aligned_cols=42 Identities=21% Similarity=0.091 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+......|.+..|-.. ...||+..|++..-|-.+|.+|-.=.
T Consensus 10 l~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 52 (185)
T 2yve_A 10 LRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALL 52 (185)
T ss_dssp HHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCcCHHHHH
Confidence 4455566888888777 99999999999999999999865544
No 228
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.34 E-value=28 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 78899999999999999998765
No 229
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.31 E-value=38 Score=25.86 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+......|.+..|-.. ..+||+..|++..-|-.+|.||..=..
T Consensus 15 l~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~ 58 (193)
T 2dg8_A 15 LAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLR 58 (193)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCCCHHHHHH
Confidence 4455566888887766 999999999999999999998766543
No 230
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=21.22 E-value=27 Score=24.29 Aligned_cols=23 Identities=13% Similarity=0.495 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|.-|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 78899999999999999998754
No 231
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.20 E-value=68 Score=24.75 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 101 QSRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 101 Ql~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
-+..-...|.+..|-.. ..+||+..|++..-|-..|.||..=..
T Consensus 16 Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 16 ALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhCCHHHHHH
Confidence 34455666888888877 999999999999999999998665543
No 232
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.19 E-value=30 Score=26.82 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=34.1
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+..-.+.|.+..|-.. ..+||+..|++..-|-.+|.||-.=.
T Consensus 15 l~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~sKe~L~ 57 (203)
T 2np5_A 15 AAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMF 57 (203)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3445566888888777 99999999999999999999976543
No 233
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.69 E-value=1.1e+02 Score=17.12 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=11.8
Q ss_pred HHHHhHhhHHHHHHHHHHHHHH
Q 042627 155 LKKCCESLTDENKRLKKELQEL 176 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l 176 (237)
||-+...|.-|-+.|+.|+.+|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3444445555666666665554
No 234
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.65 E-value=47 Score=21.98 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCccchhhccchH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRR 140 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRR 140 (237)
..+||+.+|++...|.-|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 78899999999999999998765
No 235
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=20.65 E-value=56 Score=24.84 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+....+.|.+..|-.. ..+||+..|++..-|-..|.+|..=.
T Consensus 22 l~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 64 (213)
T 2qtq_A 22 LQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLL 64 (213)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHH
Confidence 4455566888888777 99999999999999999999976554
No 236
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=20.61 E-value=68 Score=24.64 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRART 143 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~ 143 (237)
+......|.+..|-.. ..+||+..|++..-|-.+|.||-.=.
T Consensus 36 l~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~ 78 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFG 78 (222)
T ss_dssp HHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHH
Confidence 3445556888888777 99999999999999999999976543
No 237
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.44 E-value=2.1e+02 Score=20.44 Aligned_cols=30 Identities=33% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 149 EVDCEFLKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 149 ~~~~~~Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
-.+++.|-...+.+.+|...|+.++..|+.
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665554
No 238
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.36 E-value=1.5e+02 Score=17.81 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=17.5
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHh
Q 042627 158 CCESLTDENKRLKKELQELQSAK 180 (237)
Q Consensus 158 ~~~~l~~en~~l~~e~~~l~~~~ 180 (237)
.-+.|..+|..|+.|+..|+.+.
T Consensus 9 kVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 9 AVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 34567888888888888888754
No 239
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.23 E-value=92 Score=23.13 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=14.9
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHH
Q 042627 155 LKKCCESLTDENKRLKKELQELQS 178 (237)
Q Consensus 155 Lk~~~~~l~~en~~l~~e~~~l~~ 178 (237)
|+.....++.+..+++.|++.|+.
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444566666777777777766
No 240
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.09 E-value=58 Score=25.75 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+....+.|.+..|-.. ..+||++.|++..-|-.+|.||-.=..
T Consensus 49 l~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~ 92 (229)
T 3bni_A 49 LDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMAD 92 (229)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHH
Confidence 3344455888888777 999999999999999999998655443
No 241
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=20.09 E-value=58 Score=24.39 Aligned_cols=43 Identities=5% Similarity=-0.008 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+....+.|.+..|-.. ..+||++.|++..-|-..|.||-.=..
T Consensus 8 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 51 (194)
T 3bqz_B 8 LGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFL 51 (194)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHH
Confidence 4555667888888777 999999999999999999998765543
No 242
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=20.06 E-value=72 Score=23.60 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCCCH-HHHHHHHhCCCCccchhhccchHHHHH
Q 042627 102 SRLLEDSFKLHTTLNS-KQALAEQLNLEPRQVEVWFQNRRARTK 144 (237)
Q Consensus 102 l~~LE~~F~~~~~p~~-r~~LA~~LgL~~rQVkvWFQNRRak~K 144 (237)
+....+.|.+..|-.. ..+||+..|++..-+-..|.|+-.=..
T Consensus 14 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (188)
T 3qkx_A 14 FSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLE 57 (188)
T ss_dssp HHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHH
Confidence 4455566888888777 999999999999999999998765543
No 243
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.01 E-value=29 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCccchhhccchHH
Q 042627 118 KQALAEQLNLEPRQVEVWFQNRRA 141 (237)
Q Consensus 118 r~~LA~~LgL~~rQVkvWFQNRRa 141 (237)
..+||..+|++...|.-|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 678999999999999999987653
Done!