Query 042631
Match_columns 66
No_of_seqs 109 out of 332
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kkj_A Amine oxidase, flavin-c 99.1 5.2E-11 1.8E-15 72.2 5.0 58 1-63 17-77 (336)
2 3qj4_A Renalase; FAD/NAD(P)-bi 98.8 2.3E-09 7.7E-14 73.2 4.2 61 2-65 17-87 (342)
3 1yvv_A Amine oxidase, flavin-c 98.3 4.1E-07 1.4E-11 60.9 4.0 58 1-63 17-77 (336)
4 2ivd_A PPO, PPOX, protoporphyr 98.1 2.5E-06 8.5E-11 60.1 4.6 52 2-58 32-86 (478)
5 2b9w_A Putative aminooxidase; 97.9 1.6E-05 5.6E-10 55.1 4.6 52 2-58 22-77 (424)
6 2vvm_A Monoamine oxidase N; FA 97.8 1.9E-05 6.4E-10 56.1 4.2 51 2-57 55-108 (495)
7 4gde_A UDP-galactopyranose mut 97.8 2.7E-05 9.1E-10 54.9 4.9 53 2-59 26-83 (513)
8 2yg5_A Putrescine oxidase; oxi 97.6 5E-05 1.7E-09 53.1 4.4 52 2-58 21-75 (453)
9 1s3e_A Amine oxidase [flavin-c 97.6 6.9E-05 2.3E-09 53.9 4.8 52 2-58 20-75 (520)
10 1sez_A Protoporphyrinogen oxid 97.6 6.1E-05 2.1E-09 53.5 4.1 52 2-58 29-83 (504)
11 3i6d_A Protoporphyrinogen oxid 97.4 7.7E-05 2.6E-09 51.7 3.2 52 2-58 21-81 (470)
12 3lov_A Protoporphyrinogen oxid 97.4 0.00018 6.1E-09 50.7 4.1 52 2-58 20-76 (475)
13 1rsg_A FMS1 protein; FAD bindi 97.3 0.00029 9.8E-09 50.8 5.0 47 2-53 24-77 (516)
14 4dgk_A Phytoene dehydrogenase; 97.3 0.00016 5.5E-09 51.1 3.6 49 2-56 17-68 (501)
15 3k7m_X 6-hydroxy-L-nicotine ox 97.3 0.00039 1.3E-08 48.1 5.5 52 2-58 17-75 (431)
16 1v0j_A UDP-galactopyranose mut 97.3 0.0003 1E-08 49.7 4.6 54 2-58 23-81 (399)
17 2e1m_A L-glutamate oxidase; L- 97.2 0.00042 1.4E-08 49.9 4.9 54 2-58 60-125 (376)
18 3nrn_A Uncharacterized protein 97.2 0.00042 1.4E-08 48.2 4.7 52 2-58 16-72 (421)
19 2bi7_A UDP-galactopyranose mut 97.2 0.00061 2.1E-08 48.1 5.2 54 2-58 19-76 (384)
20 1i8t_A UDP-galactopyranose mut 97.0 0.00082 2.8E-08 47.0 4.6 52 2-58 17-72 (367)
21 2iid_A L-amino-acid oxidase; f 96.9 0.0011 3.8E-08 47.0 4.9 54 2-58 49-105 (498)
22 3nks_A Protoporphyrinogen oxid 96.9 0.0014 4.7E-08 46.0 5.2 53 2-58 18-78 (477)
23 4dsg_A UDP-galactopyranose mut 96.8 0.0016 5.4E-08 47.2 4.9 53 2-59 25-82 (484)
24 3ka7_A Oxidoreductase; structu 96.7 0.0013 4.6E-08 45.2 3.3 52 2-58 16-72 (425)
25 3hdq_A UDP-galactopyranose mut 96.6 0.003 1E-07 45.7 5.0 53 2-58 45-101 (397)
26 1b37_A Protein (polyamine oxid 96.6 0.0025 8.7E-08 45.1 4.5 51 2-57 20-78 (472)
27 2jae_A L-amino acid oxidase; o 96.1 0.0095 3.3E-07 42.1 5.3 53 2-58 27-97 (489)
28 1d5t_A Guanine nucleotide diss 95.4 0.023 7.9E-07 40.3 5.0 53 2-58 22-96 (433)
29 2z3y_A Lysine-specific histone 95.2 0.025 8.4E-07 42.6 4.8 40 2-46 123-165 (662)
30 3ayj_A Pro-enzyme of L-phenyla 95.2 0.017 5.9E-07 45.1 4.0 54 2-58 72-158 (721)
31 2xag_A Lysine-specific histone 93.7 0.044 1.5E-06 43.3 3.3 40 2-46 294-336 (852)
32 2bcg_G Secretory pathway GDP d 93.7 0.067 2.3E-06 38.1 4.0 27 2-31 27-56 (453)
33 3p1w_A Rabgdi protein; GDI RAB 92.5 0.083 2.8E-06 39.1 3.1 52 1-55 35-107 (475)
34 4gut_A Lysine-specific histone 92.1 0.22 7.7E-06 38.7 5.1 41 2-46 352-395 (776)
35 3rnm_E Lipoamide acyltransfera 50.5 13 0.00044 20.2 2.5 25 2-27 14-39 (58)
36 2eq9_C Pyruvate dehydrogenase 48.1 18 0.0006 17.6 2.6 24 2-26 7-31 (41)
37 2eq7_C 2-oxoglutarate dehydrog 46.8 17 0.00059 17.5 2.4 25 2-27 6-31 (40)
38 2eq8_C Pyruvate dehydrogenase 45.4 16 0.00053 17.7 2.1 24 2-26 6-30 (40)
39 3dva_I Dihydrolipoyllysine-res 39.3 19 0.00065 26.2 2.6 28 2-30 135-163 (428)
40 2llw_A Heat shock protein STI1 38.6 21 0.00071 20.1 2.2 19 47-65 50-68 (71)
41 3dme_A Conserved exported prot 38.2 19 0.00065 23.4 2.2 25 2-29 20-47 (369)
42 4a9w_A Monooxygenase; baeyer-v 37.8 61 0.0021 20.7 4.6 23 2-27 19-44 (357)
43 1w4x_A Phenylacetone monooxyge 33.5 16 0.00054 26.4 1.3 26 2-30 32-60 (542)
44 3f8d_A Thioredoxin reductase ( 32.4 24 0.00081 22.4 1.9 21 2-27 31-54 (323)
45 3lzw_A Ferredoxin--NADP reduct 30.6 30 0.001 22.1 2.2 23 2-27 23-48 (332)
46 4gcm_A TRXR, thioredoxin reduc 30.2 28 0.00097 22.4 2.0 23 2-28 22-47 (312)
47 1zy8_K Pyruvate dehydrogenase 29.2 35 0.0012 22.8 2.4 26 2-28 135-161 (229)
48 1w85_I Dihydrolipoyllysine-res 29.0 42 0.0014 16.9 2.2 24 2-26 13-37 (49)
49 3fpz_A Thiazole biosynthetic e 28.6 27 0.00093 23.1 1.8 23 2-27 81-108 (326)
50 1tbx_A ORF F-93, hypothetical 26.8 23 0.00079 19.4 1.0 25 41-65 33-57 (99)
51 2f60_K Pyruvate dehydrogenase 26.0 54 0.0018 17.8 2.4 24 2-26 16-40 (64)
52 2k02_A Ferrous iron transport 25.9 16 0.00056 21.2 0.3 25 41-65 23-47 (87)
53 3gwf_A Cyclohexanone monooxyge 25.7 40 0.0014 24.6 2.3 26 2-30 24-53 (540)
54 2vdc_G Glutamate synthase [NAD 25.1 41 0.0014 24.0 2.3 22 2-26 138-162 (456)
55 4ap3_A Steroid monooxygenase; 24.7 54 0.0019 23.9 2.9 25 2-29 37-64 (549)
56 1rij_A E6APN1 peptide; Trp-CAG 24.1 54 0.0018 15.2 1.9 12 51-62 2-13 (26)
57 1xn7_A Hypothetical protein YH 24.1 14 0.00048 20.9 -0.3 26 40-65 22-47 (78)
58 3jw4_A Transcriptional regulat 24.0 31 0.0011 19.9 1.3 25 41-65 64-88 (148)
59 2ve8_A FTSK, DNA translocase F 24.0 51 0.0017 18.8 2.1 17 50-66 40-56 (73)
60 3itj_A Thioredoxin reductase 1 23.7 49 0.0017 21.1 2.3 24 2-28 38-68 (338)
61 3ryp_A Catabolite gene activat 22.7 20 0.00069 21.5 0.2 27 39-65 172-198 (210)
62 3iwz_A CAP-like, catabolite ac 22.6 20 0.00069 21.9 0.2 26 40-65 193-218 (230)
63 2vn2_A DNAD, chromosome replic 22.6 26 0.00091 20.8 0.8 24 42-65 59-82 (128)
64 3dje_A Fructosyl amine: oxygen 22.1 48 0.0016 22.5 2.1 23 2-27 22-48 (438)
65 4ev0_A Transcription regulator 22.1 21 0.0007 21.6 0.2 27 39-65 168-194 (216)
66 2oz6_A Virulence factor regula 21.8 21 0.00072 21.4 0.2 25 41-65 171-195 (207)
67 1gcy_A Glucan 1,4-alpha-maltot 21.6 43 0.0015 24.3 1.8 27 37-63 74-107 (527)
68 3lad_A Dihydrolipoamide dehydr 21.6 42 0.0014 23.4 1.7 21 2-25 19-42 (476)
69 2q7v_A Thioredoxin reductase; 21.5 51 0.0018 21.3 2.0 23 2-28 24-49 (325)
70 3v2d_S 50S ribosomal protein L 21.4 42 0.0014 20.5 1.5 15 49-63 96-110 (112)
71 1bal_A Dihydrolipoamide succin 21.2 66 0.0023 16.4 2.1 24 3-27 17-41 (51)
72 3dv8_A Transcriptional regulat 20.9 23 0.00079 21.4 0.2 27 39-65 174-200 (220)
73 3fst_A 5,10-methylenetetrahydr 20.6 65 0.0022 22.4 2.5 28 36-63 172-203 (304)
No 1
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.15 E-value=5.2e-11 Score=72.25 Aligned_cols=58 Identities=29% Similarity=0.560 Sum_probs=51.7
Q ss_pred ChhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHHHhCCc
Q 042631 1 IADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGWLERGL 63 (66)
Q Consensus 1 ~A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~~~~g~ 63 (66)
+|..|+++|++ ||| ++.+|||++|++..+. .+|||+|||++.++.|...+..+...+.
T Consensus 17 aA~~La~~G~~V~v~Ek---~~~~GG~~~~~~~~~~--~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (336)
T 3kkj_A 17 AAQALTAAGHQVHLFDK---SRGSGGRMSSKRSDAG--ALDMGAQYFTARDRRFATAVKQWQAQGH 77 (336)
T ss_dssp HHHHHHHTTCCEEEECS---SSSSCGGGCEEEETTE--EEECSCCCBCCCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCCCCEEEEEC---CCCCCCcccccccCCc--eeecCccccccCcHHHHHHHHHHHhccc
Confidence 37899999998 999 9999999999998765 6999999999999999998888876554
No 2
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.84 E-value=2.3e-09 Score=73.18 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=52.3
Q ss_pred hhHHHH---CCCc---cccccCCCCcccccceeecCCCC-eeecccCceeeeCCH---HHHHHHHHHHhCCccc
Q 042631 2 ADYLRS---RGVR---FEDIWGNHGLGGRMRSRMIRPQP-QIFGHAAQFITVNNS---RFCLLINGWLERGLVR 65 (66)
Q Consensus 2 A~~L~~---~G~~---fEk~~g~rg~GGRmaTRr~~~~~-~~~DhGAqyft~~~~---~f~~~v~~~~~~g~v~ 65 (66)
|..|++ +|++ ||| ++++||||+|++..... +.+|||++||++.++ .|.+++++|.+.|++.
T Consensus 17 A~~L~~~~~~G~~V~v~Ek---~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (342)
T 3qj4_A 17 AALLRRQTSGPLYLAVWDK---ADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLR 87 (342)
T ss_dssp HHHHHSCC-CCEEEEEECS---SSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCE
T ss_pred HHHHHhhccCCceEEEEEC---CCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHhCCCee
Confidence 778888 8987 999 99999999999975432 579999999999887 7889999998887653
No 3
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.33 E-value=4.1e-07 Score=60.90 Aligned_cols=58 Identities=29% Similarity=0.560 Sum_probs=51.7
Q ss_pred ChhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHHHhCCc
Q 042631 1 IADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGWLERGL 63 (66)
Q Consensus 1 ~A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~~~~g~ 63 (66)
+|..|+++|++ +|| ...+|||+++++..+. .+|+|+++|+..++.+.+++++|...+.
T Consensus 17 ~A~~L~~~G~~V~vlE~---~~~~gg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (336)
T 1yvv_A 17 AAQALTAAGHQVHLFDK---SRGSGGRMSSKRSDAG--ALDMGAQYFTARDRRFATAVKQWQAQGH 77 (336)
T ss_dssp HHHHHHHTTCCEEEECS---SSSSCGGGCEEEETTE--EEECSCCCBCCCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCCCcEEEEEC---CCCCcccceeEecCCC--eEecCCCeEecCCHHHHHHHHHHHhCCC
Confidence 37889999988 999 9999999999988764 6999999999999999999999987554
No 4
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=98.12 E-value=2.5e-06 Score=60.13 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=46.1
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ ||+ +..+|||+.|.+.++. .+|+|+++|...++.+.++++++
T Consensus 32 a~~l~~~g~~v~v~E~---~~~~GGr~~t~~~~g~--~~~~g~~~~~~~~~~~~~~~~~~ 86 (478)
T 2ivd_A 32 AHHLRSRGTDAVLLES---SARLGGAVGTHALAGY--LVEQGPNSFLDREPATRALAAAL 86 (478)
T ss_dssp HHHHHTTTCCEEEECS---SSSSBTTCCEEEETTE--EEESSCCCEETTCHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEEEc---CCCCCceeeeeccCCe--eeecChhhhhhhhHHHHHHHHHc
Confidence 6789999988 999 9999999999998654 79999999998888888888875
No 5
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=97.85 E-value=1.6e-05 Score=55.13 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=45.2
Q ss_pred hhHHHHCC-Cc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRG-VR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G-~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++| ++ ||+ +..+|||+.|...++. .+|.|++++....+.+.++++++
T Consensus 22 A~~L~~~g~~~v~v~E~---~~~~GG~~~t~~~~G~--~~d~G~~~~~~~~~~~~~l~~~~ 77 (424)
T 2b9w_A 22 GMYLEQAGFHDYTILER---TDHVGGKCHSPNYHGR--RYEMGAIMGVPSYDTIQEIMDRT 77 (424)
T ss_dssp HHHHHHTTCCCEEEECS---SSCSSTTCCCCEETTE--ECCSSCCCBCTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCcEEEEEC---CCCCCCcccccCCCCc--ccccCceeecCCcHHHHHHHHHh
Confidence 67899999 77 999 9999999999987654 79999999988888888888775
No 6
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.80 E-value=1.9e-05 Score=56.12 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=43.6
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLING 57 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~ 57 (66)
|..|+++|++ +|+ +..+|||+.|.+.++. .||.|+++|....+.+.+++++
T Consensus 55 A~~l~~~g~~v~v~E~---~~~~GGr~~t~~~~g~--~~d~G~~~~~~~~~~~~~~l~~ 108 (495)
T 2vvm_A 55 TRDLTVAGFKTLLLEA---RDRIGGRSWSSNIDGY--PYEMGGTWVHWHQSHVWREITR 108 (495)
T ss_dssp HHHHHHTTCCEEEECS---SSBSBTTCCEEEETTE--EEECSCCCBCTTSHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEeC---CCCCCCcceecccCCe--eecCCCeEecCccHHHHHHHHH
Confidence 6789999988 999 9999999999887654 7999999998777877777665
No 7
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=97.79 E-value=2.7e-05 Score=54.93 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=44.2
Q ss_pred hhHHHH-CCCc---cccccCCCCcccccceeec-CCCCeeecccCceeeeCCHHHHHHHHHHH
Q 042631 2 ADYLRS-RGVR---FEDIWGNHGLGGRMRSRMI-RPQPQIFGHAAQFITVNNSRFCLLINGWL 59 (66)
Q Consensus 2 A~~L~~-~G~~---fEk~~g~rg~GGRmaTRr~-~~~~~~~DhGAqyft~~~~~f~~~v~~~~ 59 (66)
|..|++ .|++ ||| +.-+|||+.|.+. ++. .||.|+..|...++.+.++++++.
T Consensus 26 A~~L~k~~G~~V~VlE~---~~~~GG~~~T~~~~~G~--~~D~G~h~~~~~~~~v~~l~~e~~ 83 (513)
T 4gde_A 26 AKRLNQIDGPSWMIVDS---NETPGGLASTDVTPEGF--LYDVGGHVIFSHYKYFDDCLDEAL 83 (513)
T ss_dssp HHHHHHHCCSCEEEEES---SSSCCGGGCEEECTTSC--EEESSCCCCCCCBHHHHHHHHHHS
T ss_pred HHHHHhhCCCCEEEEEC---CCCCcCCeeeEEecCCE--EEEeCceEecCCCHHHHHHHHHhC
Confidence 678887 4887 999 9999999999554 443 799999999888999999888864
No 8
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.64 E-value=5e-05 Score=53.10 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=43.9
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ ||+ +..+|||+.|.+.++. .+|+|++++....+.+.++++++
T Consensus 21 A~~l~~~g~~v~v~E~---~~~~GG~~~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~~ 75 (453)
T 2yg5_A 21 ATALRKAGLSVAVIEA---RDRVGGRTWTDTIDGA--VLEIGGQWVSPDQTALISLLDEL 75 (453)
T ss_dssp HHHHHHTTCCEEEECS---SSSSCTTCCEEEETTE--EEECSCCCBCTTCHHHHHHHHHT
T ss_pred HHHHHHCCCcEEEEEC---CCCCCCceeccccCCc--eeccCCeEecCccHHHHHHHHHc
Confidence 6789999988 999 9999999999887543 69999999988777777777664
No 9
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=97.61 E-value=6.9e-05 Score=53.87 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=43.7
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecC-CCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIR-PQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~-~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ ||+ +..+|||+.|.+.. +. .+|.|++++....+.+.++++++
T Consensus 20 A~~L~~~G~~V~vlE~---~~~~GGr~~t~~~~~g~--~~d~G~~~~~~~~~~~~~l~~~l 75 (520)
T 1s3e_A 20 AKLLHDSGLNVVVLEA---RDRVGGRTYTLRNQKVK--YVDLGGSYVGPTQNRILRLAKEL 75 (520)
T ss_dssp HHHHHHTTCCEEEECS---SSSSBTTCCEECCTTTS--CEESSCCEECTTCHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEEeC---CCCCCCceeecccCCCc--ccccCceEecCCcHHHHHHHHHc
Confidence 6789999988 999 99999999998875 43 69999999987777777777653
No 10
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.58 E-value=6.1e-05 Score=53.46 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=45.5
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ +|+ ...+|||+.|.+.++. .+|.|+++|...++.+.++++++
T Consensus 29 A~~l~~~g~~v~v~E~---~~~~GG~~~~~~~~g~--~~~~g~~~~~~~~~~~~~~~~~l 83 (504)
T 1sez_A 29 AYKLKIHGLNVTVFEA---EGKAGGKLRSVSQDGL--IWDEGANTMTESEGDVTFLIDSL 83 (504)
T ss_dssp HHHHHTTSCEEEEECS---SSSSCSSCCEEEETTE--EEESSCCCBCCCSHHHHHHHHHT
T ss_pred HHHHHHCCCcEEEEEe---CCCCCCceeeeccCCe--EEecCCcccccCcHHHHHHHHHc
Confidence 6789999988 999 9999999999887654 69999999998888888888875
No 11
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=97.45 E-value=7.7e-05 Score=51.74 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=45.1
Q ss_pred hhHHHHCC------Cc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRG------VR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G------~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++| ++ ||+ +..+|||++|.+.++. .+|.|++.|....+.+.++++++
T Consensus 21 A~~L~~~G~~~~~~~~V~vlEa---~~~~GG~~~s~~~~g~--~~d~G~~~~~~~~~~~~~l~~~l 81 (470)
T 3i6d_A 21 AFYMEKEIKEKNLPLELTLVEA---SPRVGGKIQTVKKDGY--IIERGPDSFLERKKSAPQLVKDL 81 (470)
T ss_dssp HHHHHHHHTTTTCSEEEEEECS---SSSSCTTCCEECCTTC--CEESSCCCEETTCTHHHHHHHHT
T ss_pred HHHHHHhccccCCCCCEEEEEC---CCCCCceEEEeccCCE--EeccChhhhhhCCHHHHHHHHHc
Confidence 77899998 66 999 9999999999888665 69999999988888888888876
No 12
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.36 E-value=0.00018 Score=50.72 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=45.6
Q ss_pred hhHHHHCC--Cc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRG--VR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G--~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++| ++ ||+ +..+|||++|.+..+. .+|+|++.+....+.+.++++++
T Consensus 20 A~~L~~~g~~~~v~v~E~---~~~~GG~~~~~~~~g~--~~~~g~~~~~~~~~~~~~l~~~l 76 (475)
T 3lov_A 20 AYYAERAFPDLNITLLEA---GERLGGKVATYREDGF--TIERGPDSYVARKHILTDLIEAI 76 (475)
T ss_dssp HHHHHHHCTTSEEEEECS---SSSSBTTCCEECSTTC--CEESSCCCEETTSTHHHHHHHHT
T ss_pred HHHHHHhCCCCCEEEEEC---CCCCCceeEEEeeCCE--EEecCchhhhcccHHHHHHHHHc
Confidence 77899999 76 999 9999999999988665 69999999988888888888876
No 13
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=97.33 E-value=0.00029 Score=50.81 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=37.8
Q ss_pred hhHHHHCC-Cc---cccccCCCCcccccceeec-CCCCeeecccCceeeeC--CHHHHH
Q 042631 2 ADYLRSRG-VR---FEDIWGNHGLGGRMRSRMI-RPQPQIFGHAAQFITVN--NSRFCL 53 (66)
Q Consensus 2 A~~L~~~G-~~---fEk~~g~rg~GGRmaTRr~-~~~~~~~DhGAqyft~~--~~~f~~ 53 (66)
|..|+++| ++ ||+ ...+|||+.|.+. ++. .||.|+++|... ++.+..
T Consensus 24 A~~L~~~G~~~V~VlEa---~~riGGr~~t~~~~~G~--~~D~G~~~~~~~~~~~~~~~ 77 (516)
T 1rsg_A 24 ASTLHQNGIQDCLVLEA---RDRVGGRLQTVTGYQGR--KYDIGASWHHDTLTNPLFLE 77 (516)
T ss_dssp HHHHHHTTCCSEEEECS---SSSSBTTCCEEECGGGC--EEESSCCEECCTTTCHHHHH
T ss_pred HHHHHhcCCCCEEEEeC---CCCCCCceeeeecCCCc--EEecCCeEEecCCCChHHHH
Confidence 67899999 77 999 9999999999876 444 699999999753 444443
No 14
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=97.32 E-value=0.00016 Score=51.12 Aligned_cols=49 Identities=24% Similarity=0.208 Sum_probs=32.2
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLIN 56 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~ 56 (66)
|..|+++|++ ||+ ..-+|||+.|...++. .||.|+.+++-. ..+.++++
T Consensus 17 A~~La~~G~~V~VlEa---~~~~GG~~~t~~~~G~--~~D~G~~~~~~~-~~~~~l~~ 68 (501)
T 4dgk_A 17 AIRLQAAGIPVLLLEQ---RDKPGGRAYVYEDQGF--TFDAGPTVITDP-SAIEELFA 68 (501)
T ss_dssp HHHHHHTTCCEEEECC---C-------CEEEETTE--EEECSCCCBSCT-HHHHHHHH
T ss_pred HHHHHHCCCcEEEEcc---CCCCCCcEEEEEeCCE--EEecCceeecCc-hhHHHHHH
Confidence 6789999988 999 9999999999988765 799999998632 23444443
No 15
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=97.32 E-value=0.00039 Score=48.14 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=43.9
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecC---CCCeeecccCceeeeC-CHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIR---PQPQIFGHAAQFITVN-NSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~---~~~~~~DhGAqyft~~-~~~f~~~v~~~ 58 (66)
|..|+++|++ +|+ ..-+|||+.|.... +. .+|+|++++... .+.+.++++++
T Consensus 17 A~~L~~~G~~V~vlE~---~~~~GG~~~t~~~~cipg~--~~~~g~~~~~~~~~~~~~~~~~~~ 75 (431)
T 3k7m_X 17 ARDLTNAGKKVLLLEG---GERLGGRAYSRESRNVPGL--RVEIGGAYLHRKHHPRLAAELDRY 75 (431)
T ss_dssp HHHHHHTTCCEEEECS---SSSSBTTCCEEECSSSTTC--EEESSCCCBCTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEec---CCCccCeecceeccCCCCc--eEecCCeeeCCCCcHHHHHHHHHh
Confidence 7889999988 999 88999999998876 43 699999999887 77777776664
No 16
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=97.27 E-value=0.0003 Score=49.67 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred hhHHHHC-CCc---cccccCCCCcccccceeecCCCCeee-cccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSR-GVR---FEDIWGNHGLGGRMRSRMIRPQPQIF-GHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~-G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~-DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++ |++ +|| +..+||++.|...+.....+ |.|+..|...++.+.++++++
T Consensus 23 A~~L~~~~g~~v~v~E~---~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~ 81 (399)
T 1v0j_A 23 AERVATQLDKRVLVLER---RPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQF 81 (399)
T ss_dssp HHHHHHHSCCCEEEECS---SSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTT
T ss_pred HHHHHHhCCCCEEEEeC---CCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHh
Confidence 6788888 887 999 99999999999873112256 599999998889888888764
No 17
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.22 E-value=0.00042 Score=49.94 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=44.5
Q ss_pred hhHHHHCCCc---cccccCC-CCcccccceeecC--------CCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGN-HGLGGRMRSRMIR--------PQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~-rg~GGRmaTRr~~--------~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ ||+ + ..+|||+.|.+.. .....+|.|+++|....+.+.++++++
T Consensus 60 A~~L~~~G~~V~VlE~---~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~~~l 125 (376)
T 2e1m_A 60 GDLLTRAGHDVTILEA---NANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLALIDKL 125 (376)
T ss_dssp HHHHHHTSCEEEEECS---CSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHHHHHT
T ss_pred HHHHHHCCCcEEEEec---cccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHHHHHc
Confidence 6789999988 999 8 8999999998843 122479999999988888888888775
No 18
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=97.21 E-value=0.00042 Score=48.19 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=42.9
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeee--CCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITV--NNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~--~~~~f~~~v~~~ 58 (66)
|..|+++|++ +|| +.-+|||++|...++. .+|.|++++.. .++.+.++++++
T Consensus 16 A~~La~~G~~V~vlE~---~~~~GG~~~~~~~~g~--~~d~G~~~~~~~~~~~~~~~l~~~l 72 (421)
T 3nrn_A 16 GAFLARNGHEIIVLEK---SAMIGGRFTNLPYKGF--QLSTGALHMIPHGEDGPLAHLLRIL 72 (421)
T ss_dssp HHHHHHTTCEEEEECS---SSSSCTTSSEEEETTE--EEESSSCSEETTTTSSHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEeC---CCCCCceeEEeccCCE--EEecCCeEEEccCCChHHHHHHHHh
Confidence 7789999988 999 9999999999888765 79999988754 345777877775
No 19
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=97.16 E-value=0.00061 Score=48.05 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=44.3
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCee-ecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQI-FGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~-~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ ||+ +..+||++.|......... .|.|+.+|...++.+.++++++
T Consensus 19 A~~l~~~g~~v~v~E~---~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l 76 (384)
T 2bi7_A 19 GRQLAEKGHQVHIIDQ---RDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKH 76 (384)
T ss_dssp HHHHHTTTCEEEEEES---SSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTT
T ss_pred HHHHHHCCCcEEEEEe---cCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHH
Confidence 6788998977 999 9999999999887321224 4999999999999988888875
No 20
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=97.01 E-value=0.00082 Score=47.02 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=43.2
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeec-ccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFG-HAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~D-hGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ +|+ +..+||++.|....+. .+| .|+..|...++.+.++++++
T Consensus 17 A~~l~~~g~~v~v~E~---~~~~GG~~~~~~~~g~--~~~~~G~~~~~~~~~~~~~~~~~l 72 (367)
T 1i8t_A 17 ANELKKLNKKVLVIEK---RNHIGGNAYTEDCEGI--QIHKYGAHIFHTNDKYIWDYVNDL 72 (367)
T ss_dssp HHHHGGGTCCEEEECS---SSSSSGGGCEEEETTE--EEETTSCCCEEESCHHHHHHHHTT
T ss_pred HHHHHhCCCcEEEEec---CCCCCcceEeeccCCc--eeeccCCceecCCCHHHHHHHHHh
Confidence 6788888987 999 8899999999886543 575 99999998888877777654
No 21
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=96.94 E-value=0.0011 Score=46.98 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=43.1
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ +|+ +..+|||+.|.+.....+.+|.|+++|....+.+.++++++
T Consensus 49 A~~l~~~g~~v~vlE~---~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 105 (498)
T 2iid_A 49 AYVLAGAGHQVTVLEA---SERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKF 105 (498)
T ss_dssp HHHHHHHTCEEEEECS---SSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred HHHHHhCCCeEEEEEC---CCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHh
Confidence 6788999988 999 99999999987753333578999999987777777777653
No 22
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=96.93 E-value=0.0014 Score=45.97 Aligned_cols=53 Identities=25% Similarity=0.244 Sum_probs=41.3
Q ss_pred hhHHHHCCC--c---cccccCCCCcccccceeecCCCCeeecccCceeeeC---CHHHHHHHHHH
Q 042631 2 ADYLRSRGV--R---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITVN---NSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~--~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~~---~~~f~~~v~~~ 58 (66)
|..|+++|+ + ||+ +..+||+++|.+..+. ..+|.|++.|... .+.+.++++++
T Consensus 18 A~~L~~~G~~~~V~vlEa---~~~~GG~~~t~~~~~g-~~~d~G~~~~~~~~~~~~~~~~l~~~l 78 (477)
T 3nks_A 18 SYHLSRAPCPPKVVLVES---SERLGGWIRSVRGPNG-AIFELGPRGIRPAGALGARTLLLVSEL 78 (477)
T ss_dssp HHHHHTSSSCCEEEEECS---SSSSBTTCCEEECTTS-CEEESSCCCBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCcEEEEeC---CCCCCCceEEEeccCC-eEEEeCCCcccCCCcccHHHHHHHHHc
Confidence 778999998 6 999 9999999999765422 3799999999765 34566666664
No 23
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=96.82 E-value=0.0016 Score=47.23 Aligned_cols=53 Identities=21% Similarity=0.113 Sum_probs=44.4
Q ss_pred hhHHHHCC-Cc---cccccCCCCccccccee-ecCCCCeeecccCceeeeCCHHHHHHHHHHH
Q 042631 2 ADYLRSRG-VR---FEDIWGNHGLGGRMRSR-MIRPQPQIFGHAAQFITVNNSRFCLLINGWL 59 (66)
Q Consensus 2 A~~L~~~G-~~---fEk~~g~rg~GGRmaTR-r~~~~~~~~DhGAqyft~~~~~f~~~v~~~~ 59 (66)
|..|+++| .+ ||+ +..+||++.|- ..++. .+|.|+..|...++.+.+++++++
T Consensus 25 A~~l~~~g~~~v~v~E~---~~~~GG~~~~~~~~~g~--~~~~g~~~~~~~~~~~~~l~~~~~ 82 (484)
T 4dsg_A 25 AVRLTELGYKNWHLYEC---NDTPGGLSRSFLDENGF--TWDLGGHVIFSHYQYFDDVMDWAV 82 (484)
T ss_dssp HHHHHHTTCCSEEEEES---SSSSSGGGCEEECTTSC--EEESSCCCBCCSBHHHHHHHHHHC
T ss_pred HHHHHHcCCCCEEEEeC---CCCCCCeeeeeecCCCc--EEeeCCcccccChHHHHHHHHHHh
Confidence 67899998 55 999 99999999994 44443 799999999888889999988865
No 24
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=96.65 E-value=0.0013 Score=45.25 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=40.8
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeee--CCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITV--NNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~--~~~~f~~~v~~~ 58 (66)
|..|+++|++ +|| +.-+||+++|...++. .+|.|+..+.. ..+.+.++++++
T Consensus 16 A~~La~~G~~V~vlE~---~~~~GG~~~~~~~~G~--~~d~G~~~~~~~~~~~~~~~l~~~l 72 (425)
T 3ka7_A 16 AARLSKAGHEVEVFER---LPITGGRFTNLSYKGF--QLSSGAFHMLPNGPGGPLACFLKEV 72 (425)
T ss_dssp HHHHHHTTCEEEEECS---SSSSBTTSSEEEETTE--EEESSSCSCBTTGGGSHHHHHHHHT
T ss_pred HHHHHhCCCceEEEeC---CCCCCCceeeeccCCc--EEcCCCceEecCCCccHHHHHHHHh
Confidence 7789999988 999 9899999999887664 79999877643 334566776664
No 25
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=96.60 E-value=0.003 Score=45.68 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=44.0
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeec-CCCCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMI-RPQPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~-~~~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ +|| ...+||++.|.+. .+. ..+|+|+..|..+++.+.++++++
T Consensus 45 A~~l~~~g~~v~v~E~---~~~~GG~~~~~~~~~G~-~~~~~G~~~~~~~~~~~~~~~~~~ 101 (397)
T 3hdq_A 45 AERLASSGQRVLIVDR---RPHIGGNAYDCYDDAGV-LIHPYGPHIFHTNSKDVFEYLSRF 101 (397)
T ss_dssp HHHHHHTTCCEEEECS---SSSSSGGGCCEECTTSC-EECTTSCCCCEESCHHHHHHHHTS
T ss_pred HHHHHHCCCceEEEec---cCCCCCccceeeccCCc-eEeecCCcccCCChHHHHHHHHHh
Confidence 6788999987 999 9999999999873 332 236999999999999998888875
No 26
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=96.58 E-value=0.0025 Score=45.15 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=39.6
Q ss_pred hhHHHHCCC-c---cccccCCCCcccccceeecCCCCeeecccCceeee----CCHHHHHHHHH
Q 042631 2 ADYLRSRGV-R---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITV----NNSRFCLLING 57 (66)
Q Consensus 2 A~~L~~~G~-~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~----~~~~f~~~v~~ 57 (66)
|..|+++|+ + ||+ +..+|||+.|.+..+. .+|.|+++|.- ....+.+++++
T Consensus 20 a~~l~~~g~~~v~~~e~---~~~~gg~~~~~~~~~~--~~d~g~~~~~~~~~~~~~~~~~~~~~ 78 (472)
T 1b37_A 20 AKRLSEAGITDLLILEA---TDHIGGRMHKTNFAGI--NVELGANWVEGVNGGKMNPIWPIVNS 78 (472)
T ss_dssp HHHHHHTTCCCEEEECS---SSSSBTTSCEEEETTE--EEESSCCEEEEESSSSCCTHHHHHHT
T ss_pred HHHHHhcCCCceEEEeC---CCCCCCceeecccCCc--EEeeCCeEEeccCCCCCCHHHHHHHh
Confidence 678899998 6 999 8899999999887654 79999999972 23345555554
No 27
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=96.13 E-value=0.0095 Score=42.07 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=41.1
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCC---------------CCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRP---------------QPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~---------------~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ ||| +..+|||+.|-+... ....+|.|+..|.... .+.++++++
T Consensus 27 A~~L~~~g~~v~v~E~---~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 97 (489)
T 2jae_A 27 AFELQKAGYKVTVLEA---RTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSH-ITLDYCREL 97 (489)
T ss_dssp HHHHHHTTCEEEEECS---SSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTS-THHHHHHHH
T ss_pred HHHHHHCCCCEEEEec---cCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHH-HHHHHHHHc
Confidence 6789999987 999 999999998877631 2246899999887766 666776664
No 28
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=95.42 E-value=0.023 Score=40.34 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=40.0
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceee-cC------C------------CCeeecccCceeeeCCHHHHHHHHHH
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRM-IR------P------------QPQIFGHAAQFITVNNSRFCLLINGW 58 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr-~~------~------------~~~~~DhGAqyft~~~~~f~~~v~~~ 58 (66)
|..|+++|++ +|+ ..-+|||++|.. .. + ..+.+|.|.+++...+ .+.++++++
T Consensus 22 a~~l~~~g~~v~~~e~---~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~~~-~l~~ll~~l 96 (433)
T 1d5t_A 22 SGIMSVNGKKVLHMDR---NPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANG-QLVKMLLYT 96 (433)
T ss_dssp HHHHHHTTCCEEEECS---SSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEETTS-HHHHHHHHH
T ss_pred HHHHHHCCCcEEEEec---CCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeeccc-hHHHHHHHc
Confidence 6788999988 999 999999999987 21 0 1257899999888765 456666554
No 29
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=95.22 E-value=0.025 Score=42.60 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=34.4
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeee
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITV 46 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~ 46 (66)
|..|.++|++ ||+ ...+|||+.|.+..+ ..+|.|+++++-
T Consensus 123 a~~l~~~g~~v~~~e~---~~~~gg~~~~~~~~~--~~~~~G~~~~~~ 165 (662)
T 2z3y_A 123 ARQLQSFGMDVTLLEA---RDRVGGRVATFRKGN--YVADLGAMVVTG 165 (662)
T ss_dssp HHHHHHTTCEEEEECS---SSSSBTTCCEEEETT--EEEESSCCEECC
T ss_pred HHHHHHCCCeEEEEec---CCCCCCccccccccC--chhhcCcEEEeC
Confidence 6789999988 999 999999999988754 369999999874
No 30
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=95.19 E-value=0.017 Score=45.14 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=44.9
Q ss_pred hhHHHHCC--------Cc---cccccCCC-Cc----------------ccccceeecC-C----CCeeecccCceeeeCC
Q 042631 2 ADYLRSRG--------VR---FEDIWGNH-GL----------------GGRMRSRMIR-P----QPQIFGHAAQFITVNN 48 (66)
Q Consensus 2 A~~L~~~G--------~~---fEk~~g~r-g~----------------GGRmaTRr~~-~----~~~~~DhGAqyft~~~ 48 (66)
|..|.++| ++ ||+ +. .+ |||+.|.+.. + ....+|.|++.|...+
T Consensus 72 A~~L~~~g~~~~~~~~~~V~v~E~---~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~~~e~G~~~~~~~~ 148 (721)
T 3ayj_A 72 LYELGRLAATLPAGSGIDVQIYEA---DPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDTIYEVGAMRFPEIA 148 (721)
T ss_dssp HHHHHHHHTTSCTTCEEEEEEECC---CTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSEEEECSCCCEETTC
T ss_pred HHHHHHcCcccccCCCceEEEEec---cCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCcEEecCCEEecCcc
Confidence 67788877 66 999 88 88 9999999873 2 2357999999999888
Q ss_pred HHHHHHHHHH
Q 042631 49 SRFCLLINGW 58 (66)
Q Consensus 49 ~~f~~~v~~~ 58 (66)
+.+..+++++
T Consensus 149 ~~~~~~~~~l 158 (721)
T 3ayj_A 149 GLTWHYASAA 158 (721)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888999887
No 31
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=93.75 E-value=0.044 Score=43.26 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=34.2
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeee
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITV 46 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~ 46 (66)
|..|.++|++ ||+ ...+|||+.|-+..+ +.+|.|+++++-
T Consensus 294 A~~l~~~g~~v~v~E~---~~~~GG~~~~~~~~~--~~~~~G~~~~~~ 336 (852)
T 2xag_A 294 ARQLQSFGMDVTLLEA---RDRVGGRVATFRKGN--YVADLGAMVVTG 336 (852)
T ss_dssp HHHHHHTTCEEEEECS---SSSSCTTCCEEEETT--EEEESSCCEECC
T ss_pred HHHHHHCCCcEEEEEe---cCcCCCceeeecccc--cchhcCceEecC
Confidence 6789999988 999 999999999988754 368999999864
No 32
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=93.70 E-value=0.067 Score=38.07 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.6
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecC
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIR 31 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~ 31 (66)
|..|+++|++ +|| ..-+|||++|-..+
T Consensus 27 A~~La~~G~~V~vlE~---~~~~GG~~~t~~~~ 56 (453)
T 2bcg_G 27 SGLLSVDGKKVLHIDK---QDHYGGEAASVTLS 56 (453)
T ss_dssp HHHHHHTTCCEEEECS---SSSSCGGGCEECHH
T ss_pred HHHHHHCCCeEEEEeC---CCCCCccccceecc
Confidence 6789999988 999 99999999996544
No 33
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=92.52 E-value=0.083 Score=39.15 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=40.0
Q ss_pred ChhHHHHCCCc---cccccCCCCcccccceeecCC------------------CCeeecccCceeeeCCHHHHHHH
Q 042631 1 IADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRP------------------QPQIFGHAAQFITVNNSRFCLLI 55 (66)
Q Consensus 1 ~A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~------------------~~~~~DhGAqyft~~~~~f~~~v 55 (66)
+|..|+++|.+ +|| ..-+||+++|..... ..+.+|.+-.+|.+.++-+.-++
T Consensus 35 ~a~~l~~~g~~v~~~e~---~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~~g~L~~lL~ 107 (475)
T 3p1w_A 35 LSGLLSHYGKKILVLDR---NPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILVGGNLVKILK 107 (475)
T ss_dssp HHHHHHHTTCCEEEECS---SSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEETTSHHHHHHH
T ss_pred HHHHHHHCCCcEEEEec---cCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeecCcHHHHHHH
Confidence 37789999988 999 999999999987531 12479999999988886544433
No 34
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=92.10 E-value=0.22 Score=38.72 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=33.6
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeecCCCCeeecccCceeee
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMIRPQPQIFGHAAQFITV 46 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~~~~~~~~DhGAqyft~ 46 (66)
|..|+++|++ +|+ ...+|||+.|.+..+. ..+|.|+++++-
T Consensus 352 A~~l~~~g~~v~v~E~---~~~~ggri~T~~~~~G-~~vd~Ga~~i~G 395 (776)
T 4gut_A 352 ARQLHNFGIKVTVLEA---KDRIGGRVWDDKSFKG-VTVGRGAQIVNG 395 (776)
T ss_dssp HHHHHHHTCEEEEECS---SSSSCTTCCEECCSTT-CCEESSCCEEEC
T ss_pred HHHHHHCCCcEEEEec---ccceeceeeeccccCC-eEeccCCeEEeC
Confidence 6788999988 999 8899999999765432 369999999964
No 35
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=50.48 E-value=13 Score=20.20 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=16.7
Q ss_pred hhHHH-HCCCccccccCCCCcccccce
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMRS 27 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRmaT 27 (66)
|+.|+ +.|+++..|.| .|++||...
T Consensus 14 aRrlA~e~gIdl~~V~G-TG~~GRItk 39 (58)
T 3rnm_E 14 VRNLAMENNIKLSEVVG-SGKDGRILK 39 (58)
T ss_dssp HHHHHHHTTCCGGGCCC-CSGGGCCCH
T ss_pred HHHHHHHcCCCHHHCCC-CCCCCceeH
Confidence 45555 57888666554 488999854
No 36
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=48.15 E-value=18 Score=17.57 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=15.4
Q ss_pred hhHHH-HCCCccccccCCCCcccccc
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMR 26 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRma 26 (66)
|+.|+ +.|++...|.|+ |++||..
T Consensus 7 ar~la~e~gidl~~v~gt-G~~gri~ 31 (41)
T 2eq9_C 7 ARKLARELGIPIEEVPGS-GPLGRVR 31 (41)
T ss_dssp HHHHHHHTTCCGGGSCCC-STTCCBC
T ss_pred HHHHHHHcCCChhhcCCC-CCCCccc
Confidence 34444 678886665555 8888854
No 37
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=46.79 E-value=17 Score=17.49 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=15.8
Q ss_pred hhHHH-HCCCccccccCCCCcccccce
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMRS 27 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRmaT 27 (66)
|+.|+ +.|++...|.|+ |++||..-
T Consensus 6 ar~la~e~gidl~~v~gt-G~~gri~k 31 (40)
T 2eq7_C 6 AERLMQEKGVSPAEVQGT-GLGGRILK 31 (40)
T ss_dssp HHHHHHHTTCCTTTSCCC-SSSSCCCH
T ss_pred HHHHHHHhCCChhhcCCC-CCCCcccH
Confidence 34444 678886655544 88898643
No 38
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=45.37 E-value=16 Score=17.67 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=15.3
Q ss_pred hhHHH-HCCCccccccCCCCcccccc
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMR 26 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRma 26 (66)
|+.|+ +.|++..+|.|+ |++||..
T Consensus 6 ar~la~e~gidl~~v~gt-G~~gri~ 30 (40)
T 2eq8_C 6 IRRLARELGVDLTRLRGT-GLAGRIT 30 (40)
T ss_dssp HHHHHHHHTCCGGGCCCC-STTSCCC
T ss_pred HHHHHHHhCCChhhcCCC-CCCCcee
Confidence 34444 677886665555 8888854
No 39
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=39.35 E-value=19 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=19.9
Q ss_pred hhHHH-HCCCccccccCCCCcccccceeec
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMRSRMI 30 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRmaTRr~ 30 (66)
|+.|+ +.|+++.+|.|+ |++||..-.-+
T Consensus 135 ~R~lA~e~gvdl~~v~gt-G~~GrI~k~DV 163 (428)
T 3dva_I 135 VRKYAREKGVDIRLVQGT-GKNGRVLKEDI 163 (428)
T ss_dssp HHHHHHHTTCCGGGSCCC-STTSCCCTTTT
T ss_pred HHHHHHHcCCCHHHCCCC-CCCCceeHHHH
Confidence 45666 688887777765 89999765444
No 40
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=38.58 E-value=21 Score=20.09 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHhCCccc
Q 042631 47 NNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 47 ~~~~f~~~v~~~~~~g~v~ 65 (66)
++|.+...++.+.+.|+|+
T Consensus 50 ~nP~v~~~i~kl~~aGii~ 68 (71)
T 2llw_A 50 KNPEVFKKIQTLIAAGIIR 68 (71)
T ss_dssp HSHHHHHHHHHHHHTTSSC
T ss_pred hCHHHHHHHHHHHHcchhh
Confidence 5789999999999999885
No 41
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=38.22 E-value=19 Score=23.36 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=19.6
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceee
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRM 29 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr 29 (66)
|..|+++|++ +|| ...+|+..+.+.
T Consensus 20 A~~La~~G~~V~vlE~---~~~~~~~~s~~~ 47 (369)
T 3dme_A 20 ARALAAGGHEVLVAEA---AEGIGTGTSSRN 47 (369)
T ss_dssp HHHHHHTTCCEEEECS---SSSSSCSTTSSS
T ss_pred HHHHHhCCCeEEEEeC---CCCCCCccCcCC
Confidence 7889999988 999 766777666553
No 42
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=37.80 E-value=61 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=19.9
Q ss_pred hhHHHHCCCc---cccccCCCCcccccce
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRS 27 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaT 27 (66)
|..|+++|++ +|+ ...+||.+..
T Consensus 19 A~~l~~~g~~v~vie~---~~~~gg~~~~ 44 (357)
T 4a9w_A 19 GYFLRRSGLSYVILDA---EASPGGAWQH 44 (357)
T ss_dssp HHHHHHSSCCEEEECC---SSSSSGGGGG
T ss_pred HHHHHHCCCCEEEEEC---CCCCCCcccC
Confidence 7789999988 999 8899998765
No 43
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=33.50 E-value=16 Score=26.42 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=21.0
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceeec
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRMI 30 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr~ 30 (66)
|..|+++|++ ||| +..+||.....+.
T Consensus 32 A~~L~~~G~~v~iiE~---~~~~GG~w~~~~~ 60 (542)
T 1w4x_A 32 LYRLRELGRSVHVIET---AGDVGGVWYWNRY 60 (542)
T ss_dssp HHHHHHTTCCEEEECS---SSSSCTHHHHCCC
T ss_pred HHHHHhCCCCEEEEeC---CCCCCCcccccCC
Confidence 7789999988 999 9999997754443
No 44
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=32.41 E-value=24 Score=22.42 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.2
Q ss_pred hhHHHHCCCc---cccccCCCCcccccce
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRS 27 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaT 27 (66)
|..|+++|++ +|| . +||.+..
T Consensus 31 A~~l~~~g~~v~lie~---~--~gg~~~~ 54 (323)
T 3f8d_A 31 ALYSARYMLKTLVIGE---T--PGGQLTE 54 (323)
T ss_dssp HHHHHHTTCCEEEEES---S--TTGGGGG
T ss_pred HHHHHHCCCcEEEEec---c--CCCeecc
Confidence 6789999988 999 7 9999875
No 45
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=30.56 E-value=30 Score=22.09 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.6
Q ss_pred hhHHHHCCCc---cccccCCCCcccccce
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRS 27 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaT 27 (66)
|..|++.|++ +|| +..+||.+..
T Consensus 23 A~~l~~~g~~v~lie~---~~~~gG~~~~ 48 (332)
T 3lzw_A 23 AFYGGMRQASVKIIES---LPQLGGQLSA 48 (332)
T ss_dssp HHHHHHTTCCEEEECS---SSSSCHHHHH
T ss_pred HHHHHHCCCCEEEEEc---CCCCCceehh
Confidence 6788999988 999 9999998843
No 46
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=30.17 E-value=28 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=18.2
Q ss_pred hhHHHHCCCc---cccccCCCCccccccee
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSR 28 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTR 28 (66)
|..|+++|++ ||| . -+||.|...
T Consensus 22 A~~l~~~g~~V~liE~---~-~~gG~~~~~ 47 (312)
T 4gcm_A 22 AVYASRANLKTVMIER---G-IPGGQMANT 47 (312)
T ss_dssp HHHHHHTTCCEEEEES---S-CTTGGGGGC
T ss_pred HHHHHHCCCCEEEEec---C-CCCCeeecc
Confidence 6788999988 999 5 489998643
No 47
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=29.18 E-value=35 Score=22.80 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=18.3
Q ss_pred hhHHH-HCCCccccccCCCCccccccee
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMRSR 28 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRmaTR 28 (66)
++.|+ +.|+++.+|.|+ |++||..-.
T Consensus 135 vRklAre~gVDL~~V~GT-Gp~GRItk~ 161 (229)
T 1zy8_K 135 ARNILEKHSLDASQGTAT-GPRGIFTKE 161 (229)
T ss_dssp HHHHHHHTTCCSSSSCCC-STTSCBCHH
T ss_pred HHHHHHHcCCCccccCCC-CCCCceehH
Confidence 45555 688887776665 899997543
No 48
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=29.01 E-value=42 Score=16.93 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=14.9
Q ss_pred hhHHH-HCCCccccccCCCCcccccc
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMR 26 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRma 26 (66)
++.|+ +.|+++..|.|+ |++||..
T Consensus 13 ar~la~e~gidl~~v~gt-G~~Gri~ 37 (49)
T 1w85_I 13 VRKYAREKGVDIRLVQGT-GKNGRVL 37 (49)
T ss_dssp HHHHHHHTTCCTTTSCCC-SGGGCCC
T ss_pred HHHHHHHcCCCccccCCC-CCCCccc
Confidence 34444 677775555444 8888854
No 49
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=28.64 E-value=27 Score=23.06 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=17.5
Q ss_pred hhHHHH--CCCc---cccccCCCCcccccce
Q 042631 2 ADYLRS--RGVR---FEDIWGNHGLGGRMRS 27 (66)
Q Consensus 2 A~~L~~--~G~~---fEk~~g~rg~GGRmaT 27 (66)
|..|++ .|++ ||| ..-+||.|..
T Consensus 81 A~~la~~r~G~~V~viEk---~~~~GG~~~~ 108 (326)
T 3fpz_A 81 AYVIAKNRPDLKVCIIES---SVAPGGGSWL 108 (326)
T ss_dssp HHHHHHHCTTSCEEEECS---SSSCCTTTTC
T ss_pred HHHHHHhCCCCeEEEEEC---CCCCCceEEe
Confidence 556764 4887 999 8889998753
No 50
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=26.80 E-value=23 Score=19.44 Aligned_cols=25 Identities=12% Similarity=0.192 Sum_probs=21.1
Q ss_pred CceeeeCCHHHHHHHHHHHhCCccc
Q 042631 41 AQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 41 Aqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
|+.+.++.+.....|+.|.+.|+|.
T Consensus 33 a~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 33 NAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 5667778888999999999999984
No 51
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=26.02 E-value=54 Score=17.84 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=15.4
Q ss_pred hhHHH-HCCCccccccCCCCcccccc
Q 042631 2 ADYLR-SRGVRFEDIWGNHGLGGRMR 26 (66)
Q Consensus 2 A~~L~-~~G~~fEk~~g~rg~GGRma 26 (66)
|+.|+ +.|+++..|.|+ |++||..
T Consensus 16 aRklA~e~gidl~~V~GT-G~~GRIt 40 (64)
T 2f60_K 16 ARNILEKHSLDASQGTAT-GPRGIFT 40 (64)
T ss_dssp HHHHHHHTTCCGGGSCCC-SGGGCBC
T ss_pred HHHHHHHcCCChhhcCCC-CCCCccc
Confidence 34454 678886655555 8888854
No 52
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=25.88 E-value=16 Score=21.23 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=21.2
Q ss_pred CceeeeCCHHHHHHHHHHHhCCccc
Q 042631 41 AQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 41 Aqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
|+-|.++.+-.++.++.|.+.|.|.
T Consensus 23 A~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 23 SARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5567788888999999999999874
No 53
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=25.70 E-value=40 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=20.8
Q ss_pred hhHHH-HCCCc---cccccCCCCcccccceeec
Q 042631 2 ADYLR-SRGVR---FEDIWGNHGLGGRMRSRMI 30 (66)
Q Consensus 2 A~~L~-~~G~~---fEk~~g~rg~GGRmaTRr~ 30 (66)
|..|+ +.|++ +|| ...+||.....+.
T Consensus 24 A~~L~~~~G~~v~viE~---~~~~GGtw~~~~y 53 (540)
T 3gwf_A 24 VHKLHHELGLTTVGFDK---ADGPGGTWYWNRY 53 (540)
T ss_dssp HHHHHHTTCCCEEEEES---SSSSCTHHHHCCC
T ss_pred HHHHHHcCCCCEEEEEC---CCCCCCcccccCC
Confidence 67888 89988 999 9999997764443
No 54
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=25.13 E-value=41 Score=24.01 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=18.2
Q ss_pred hhHHHHCCCc---cccccCCCCcccccc
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMR 26 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRma 26 (66)
|..|++.|++ ||+ ..-+||-+.
T Consensus 138 A~~L~~~G~~V~v~e~---~~~~GG~l~ 162 (456)
T 2vdc_G 138 AEELRAKGYEVHVYDR---YDRMGGLLV 162 (456)
T ss_dssp HHHHHHHTCCEEEECS---SSSCSTHHH
T ss_pred HHHHHHCCCeEEEEec---cCCCCCeee
Confidence 6788899988 999 888888653
No 55
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=24.73 E-value=54 Score=23.94 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=20.8
Q ss_pred hhHHHHCCCc---cccccCCCCcccccceee
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSRM 29 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTRr 29 (66)
|..|++.|++ +|| ...+||.+...+
T Consensus 37 A~~L~~~G~~v~iiE~---~~~~GGtw~~~~ 64 (549)
T 4ap3_A 37 IHRFRSQGLTVRAFEA---ASGVGGVWYWNR 64 (549)
T ss_dssp HHHHHHTTCCEEEECS---SSSSCTHHHHCC
T ss_pred HHHHHhCCCCEEEEeC---CCCCCCccccCC
Confidence 6789999988 999 999999876444
No 56
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=24.14 E-value=54 Score=15.20 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCC
Q 042631 51 FCLLINGWLERG 62 (66)
Q Consensus 51 f~~~v~~~~~~g 62 (66)
+++++..|+..|
T Consensus 2 lqellgqwlkdg 13 (26)
T 1rij_A 2 LQELLGQWLKDG 13 (26)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 578899999876
No 57
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=24.05 E-value=14 Score=20.87 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=21.4
Q ss_pred cCceeeeCCHHHHHHHHHHHhCCccc
Q 042631 40 AAQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 40 GAqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
=|+-|.++.+-.++-++.|.+.|.|.
T Consensus 22 La~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 22 ISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35667788888999999999999874
No 58
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=24.05 E-value=31 Score=19.91 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=15.9
Q ss_pred CceeeeCCHHHHHHHHHHHhCCccc
Q 042631 41 AQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 41 Aqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
|..+.++.+.....|+.|.+.|+|.
T Consensus 64 a~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 64 AQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHCCChhHHHHHHHHHHHCCCEE
Confidence 3445667778899999999999985
No 59
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=24.02 E-value=51 Score=18.84 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhCCcccC
Q 042631 50 RFCLLINGWLERGLVRP 66 (66)
Q Consensus 50 ~f~~~v~~~~~~g~v~~ 66 (66)
+=..+++.|.+.|+|.|
T Consensus 40 RAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 40 RAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHHHHCCcCCc
Confidence 44578999999999865
No 60
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=23.69 E-value=49 Score=21.11 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=19.0
Q ss_pred hhHHHHCCCc---cccccCCC----Cccccccee
Q 042631 2 ADYLRSRGVR---FEDIWGNH----GLGGRMRSR 28 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~r----g~GGRmaTR 28 (66)
|..|+++|++ ||+ .. .+||.+...
T Consensus 38 A~~l~~~g~~v~vie~---~~~~~~~~gg~~~~~ 68 (338)
T 3itj_A 38 AIYLARAEIKPILYEG---MMANGIAAGGQLTTT 68 (338)
T ss_dssp HHHHHHTTCCCEEECC---SSBTTBCTTCGGGGS
T ss_pred HHHHHHCCCCEEEEec---CCCCCCCcCcccccc
Confidence 7789999988 999 65 688887654
No 61
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.67 E-value=20 Score=21.54 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=22.3
Q ss_pred ccCceeeeCCHHHHHHHHHHHhCCccc
Q 042631 39 HAAQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 39 hGAqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
.=|.|+.++.+.+.+.+.+|.+.|+|+
T Consensus 172 ~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 172 EIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 346777778788999999999999874
No 62
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=22.62 E-value=20 Score=21.86 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=22.2
Q ss_pred cCceeeeCCHHHHHHHHHHHhCCccc
Q 042631 40 AAQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 40 GAqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
=|.|+.++.+.+.+.+.+|.+.|+|+
T Consensus 193 lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 193 LARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 36788888888999999999999974
No 63
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=22.62 E-value=26 Score=20.82 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=18.8
Q ss_pred ceeeeCCHHHHHHHHHHHhCCccc
Q 042631 42 QFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 42 qyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
..+.++.....+.++.|.+.|+|.
T Consensus 59 ~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 59 ERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344556678999999999999874
No 64
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=22.10 E-value=48 Score=22.52 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=18.2
Q ss_pred hhHHHHCCC-c---cccccCCCCcccccce
Q 042631 2 ADYLRSRGV-R---FEDIWGNHGLGGRMRS 27 (66)
Q Consensus 2 A~~L~~~G~-~---fEk~~g~rg~GGRmaT 27 (66)
|..|+++|+ + +|| ..-+||..++
T Consensus 22 A~~La~~G~~~V~vlE~---~~~~~~~~~~ 48 (438)
T 3dje_A 22 ALHLARRGYTNVTVLDP---YPVPSAISAG 48 (438)
T ss_dssp HHHHHHTTCCCEEEEES---SCSSCTTCTT
T ss_pred HHHHHHcCCCcEEEEeC---CCCCCCCccC
Confidence 778999999 7 999 7777776553
No 65
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=22.05 E-value=21 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=21.8
Q ss_pred ccCceeeeCCHHHHHHHHHHHhCCccc
Q 042631 39 HAAQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 39 hGAqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
.=|.|+.++.+.+.+.+.+|.+.|+|+
T Consensus 168 ~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 168 ELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 346777777788999999999999874
No 66
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.78 E-value=21 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.3
Q ss_pred CceeeeCCHHHHHHHHHHHhCCccc
Q 042631 41 AQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 41 Aqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
|.|+.++.+.+.+.+.+|.+.|+|.
T Consensus 171 A~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 171 GRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6777777788999999999999874
No 67
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=21.64 E-value=43 Score=24.26 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=21.0
Q ss_pred ecccCceeeeC--C-----HHHHHHHHHHHhCCc
Q 042631 37 FGHAAQFITVN--N-----SRFCLLINGWLERGL 63 (66)
Q Consensus 37 ~DhGAqyft~~--~-----~~f~~~v~~~~~~g~ 63 (66)
.+||=+|+.+. . ++|+++|+++.++|+
T Consensus 74 ~~~GY~~~~id~~p~~Gt~~dfk~Lv~~aH~~GI 107 (527)
T 1gcy_A 74 GGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGV 107 (527)
T ss_dssp CCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcccccCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 45666677777 2 389999999999986
No 68
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=21.58 E-value=42 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.2
Q ss_pred hhHHHHCCCc---cccccCCCCccccc
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRM 25 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRm 25 (66)
|..|++.|++ +|| ...+||+.
T Consensus 19 A~~la~~G~~V~liEk---~~~~gG~~ 42 (476)
T 3lad_A 19 AIKSAQLGLKTALIEK---YKGKEGKT 42 (476)
T ss_dssp HHHHHHHTCCEEEEEC---CBCTTSSB
T ss_pred HHHHHhCCCEEEEEeC---CCccCCCC
Confidence 6788899988 999 87655554
No 69
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=21.45 E-value=51 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.7
Q ss_pred hhHHHHCCCc---cccccCCCCccccccee
Q 042631 2 ADYLRSRGVR---FEDIWGNHGLGGRMRSR 28 (66)
Q Consensus 2 A~~L~~~G~~---fEk~~g~rg~GGRmaTR 28 (66)
|..|++.|++ +|| . .+||.+...
T Consensus 24 A~~l~~~g~~v~lie~---~-~~gg~~~~~ 49 (325)
T 2q7v_A 24 AIYTGRAQLSTLILEK---G-MPGGQIAWS 49 (325)
T ss_dssp HHHHHHTTCCEEEEES---S-CTTGGGGGC
T ss_pred HHHHHHcCCcEEEEeC---C-CCCcccccc
Confidence 6788899988 999 7 699988653
No 70
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=21.36 E-value=42 Score=20.49 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhCCc
Q 042631 49 SRFCLLINGWLERGL 63 (66)
Q Consensus 49 ~~f~~~v~~~~~~g~ 63 (66)
.+..++.+...+.|+
T Consensus 96 GrV~Ala~~are~GL 110 (112)
T 3v2d_S 96 GRVKALAEGAREGGL 110 (112)
T ss_dssp SSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 344455555555554
No 71
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=21.24 E-value=66 Score=16.40 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=15.3
Q ss_pred hHHH-HCCCccccccCCCCcccccce
Q 042631 3 DYLR-SRGVRFEDIWGNHGLGGRMRS 27 (66)
Q Consensus 3 ~~L~-~~G~~fEk~~g~rg~GGRmaT 27 (66)
+.|+ +.|+++.+|.|+ |++||..-
T Consensus 17 R~lA~e~gidl~~V~gt-G~~GrI~k 41 (51)
T 1bal_A 17 RRLLAEHNLDASAIKGT-GVGGRLTR 41 (51)
T ss_dssp TTHHHHTTCCTTSSCCC-STTSCCCH
T ss_pred HHHHHHcCCCccccCCC-CCCCcccH
Confidence 3444 678886665555 88898643
No 72
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=20.86 E-value=23 Score=21.43 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=21.6
Q ss_pred ccCceeeeCCHHHHHHHHHHHhCCccc
Q 042631 39 HAAQFITVNNSRFCLLINGWLERGLVR 65 (66)
Q Consensus 39 hGAqyft~~~~~f~~~v~~~~~~g~v~ 65 (66)
.=|.|+.++.+.+.+.+.+|.+.|+|+
T Consensus 174 ~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 174 TIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 346677777788899999999999874
No 73
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=20.65 E-value=65 Score=22.37 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=21.8
Q ss_pred eecccCceeee----CCHHHHHHHHHHHhCCc
Q 042631 36 IFGHAAQFITV----NNSRFCLLINGWLERGL 63 (66)
Q Consensus 36 ~~DhGAqyft~----~~~~f~~~v~~~~~~g~ 63 (66)
-+|.||.||-. +.+.|.++++...+.|+
T Consensus 172 KvdAGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi 203 (304)
T 3fst_A 172 KVDAGANRAITQFFFDVESYLRFRDRCVSAGI 203 (304)
T ss_dssp HHHHTCCEEEECCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEeCccCCHHHHHHHHHHHHhcCC
Confidence 36889999865 44678889998888875
Done!