BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042632
(659 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 171/571 (29%), Positives = 251/571 (43%), Gaps = 54/571 (9%)
Query: 56 LEYLSLSDKKFQGSFSLSVLANHSRLEHCNISG----TIASFLQYQYDLRYIDLSHNNLA 111
L++L++S K G +S N LE ++S T FL L+++D+S N L+
Sbjct: 180 LKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236
Query: 112 GTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILP 171
G + + T+L++L + +N G + P + L +L ++ N F G +PD
Sbjct: 237 GDF-SRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 172 ELVYLDMSQNSFVGSIPPSTGYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNL 231
L LD+S N F G++PP G GELP L L+ ++LS N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 232 FVGQIFPKYMNLTQ---------------------------LAWLYLSDNQFTGRLEEGL 264
F G++ NL+ L LYL +N FTG++ L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 265 LNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDIS 324
N L L +S N LSG +P G+ S L L + N LEG++ L ++ L +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 325 GNKLYGPLEFS-SNHSSLRHLFLHNNSLNGNIPHLINEDSXXXXXXXXXXXXXXXIPEPL 383
N L G + SN ++L + L NN L G IP I IP L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 384 CHLRKLSIVDISCNNLNGSIPSCFTNISLWME------------ESDSFNGFVIWHGILL 431
R L +D++ N NG+IP+ S + ++D G LL
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 432 DASGRRLSRI-KSTSRNKFMAKNR----YESYKGDVLNYMTGLDLSSNELTGDIPSEIGL 486
+ G R ++ + ++RN +R + S D M LD+S N L+G IP EIG
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 487 LQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYN 546
+ L LNL HN SGSIP L+ + +DLS N+L GRIP +S L L ++S N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 547 DLLGPVPNSRQFANFDENNYRGNPLLCGPPV 577
+L GP+P QF F + NP LCG P+
Sbjct: 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/491 (26%), Positives = 217/491 (44%), Gaps = 85/491 (17%)
Query: 81 LEHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWL-LQNNTKLEILFLFNNFL---- 135
L + +I+G+++ F + L +DLS N+L+G + T L + + L+ L + +N L
Sbjct: 84 LSNSHINGSVSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 136 --TGRLHLPDSKR-DLLHLVISNNNFIG-TLPDNFGVILPELVYLDMSQNSFVGSIPPST 191
+G L L + DL IS N +G L D G EL +L +S N G +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDVD--- 195
Query: 192 GYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYL 251
++ CV+LEF+++S N F I P + + L L +
Sbjct: 196 ------------------------VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDI 230
Query: 252 SDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVP 311
S N+ +G + L +L++S+N G +P +L L ++ N G++
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDF 288
Query: 312 LSNLQVTRI-LDISGNKLYGPL-EFSSNHSSLRHLFLHNNSLNGNIPHLINEDSXXXXXX 369
LS T LD+SGN YG + F + S L L L +N+ +G +P
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM------------ 336
Query: 370 XXXXXXXXXIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWM----EESDSFNGFVI 425
+ L +R L ++D+S N +G +P TN+S + S++F+G ++
Sbjct: 337 -----------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVL---NYMTGLDLSSNELTGDIPS 482
+ K+T + ++ N + L + + L LS N L+G IPS
Sbjct: 386 PN---------LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 483 EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542
+G L +L L L N G IP+ +K +E++ L +N+L+G IP LS L +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 543 VSYNDLLGPVP 553
+S N L G +P
Sbjct: 497 LSNNRLTGEIP 507
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 190/436 (43%), Gaps = 50/436 (11%)
Query: 7 LVELNLSGNKFDGSLPQCLSNLTYLRVXXXXXXXXXXXXPISVFANLTSLEYLSLSDKKF 66
L L+LSGN F G++P + + L P+ + L+ L LS +F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 67 QGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQN-NTKL 125
G S+ N+S ++ + +DLS NN +G I L QN L
Sbjct: 356 SGELPESL---------TNLSASLLT----------LDLSSNNFSGPILPNLCQNPKNTL 396
Query: 126 EILFLFNNFLTGRLHLPDSK-RDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFV 184
+ L+L NN TG++ S +L+ L +S N GT+P + G L +L L + N
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 455
Query: 185 GSIPPSTGYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMN-L 243
G IP Y++ GE+P L+ C +L +++LS+N G+I PK++ L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEI-PKWIGRL 513
Query: 244 TQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLP--------HWAGNFSNLD 295
LA L LS+N F+G + L + SL LD++ N+ +G +P A NF
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 296 VLLMSRN--------------SLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS--NHS 339
+ +N +G S L+ L +I+ +++YG + N+
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT-SRVYGGHTSPTFDNNG 632
Query: 340 SLRHLFLHNNSLNGNIPHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRKLSIVDISCNNL 399
S+ L + N L+G IP I IP+ + LR L+I+D+S N L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 400 NGSIPSCFTNISLWME 415
+G IP + +++ E
Sbjct: 693 DGRIPQAMSALTMLTE 708
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 174/404 (43%), Gaps = 55/404 (13%)
Query: 3 ELKNLVELNLSGNKFDGSLPQCLSNLTY--LRVXXXXXXXXXXXXPISVFANLTSLEYLS 60
+++ L L+LS N+F G LP+ L+NL+ L + P +L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 61 LSDKKFQGSFSLSVLANHSRLEHCN-----ISGTIASFLQYQYDLRYIDLSHNNLAGTIP 115
L + F G L+N S L + +SGTI S L LR + L N L G IP
Sbjct: 401 LQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 116 TWL-----------------------LQNNTKLEILFLFNNFLTGRLHLPDSK-RDLLHL 151
L L N T L + L NN LTG + + +L L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 152 VISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPS----TGYMERXXXXXXXXXXX 207
+SNN+F G +P G L++LD++ N F G+IP + +G +
Sbjct: 520 KLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 208 XGELPKQFLTGCVS-LEFM----------------NLSHNLFVGQIFPKYMNLTQLAWLY 250
+ K+ G + LEF N++ ++ G P + N + +L
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 251 LSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSV 310
+S N +G + + + + P L+IL++ +N +SG +P G+ L++L +S N L+G +
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 311 PLSNLQVTRILDISGNKLYGPL-EFSSNHSSLRHLFLHNNSLNG 353
+S L + +D+S N L GP+ E + FL+N L G
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 171/571 (29%), Positives = 251/571 (43%), Gaps = 54/571 (9%)
Query: 56 LEYLSLSDKKFQGSFSLSVLANHSRLEHCNISG----TIASFLQYQYDLRYIDLSHNNLA 111
L++L++S K G +S N LE ++S T FL L+++D+S N L+
Sbjct: 177 LKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 233
Query: 112 GTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILP 171
G + + T+L++L + +N G + P + L +L ++ N F G +PD
Sbjct: 234 GDF-SRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 172 ELVYLDMSQNSFVGSIPPSTGYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNL 231
L LD+S N F G++PP G GELP L L+ ++LS N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 232 FVGQIFPKYMNLTQ---------------------------LAWLYLSDNQFTGRLEEGL 264
F G++ NL+ L LYL +N FTG++ L
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 265 LNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDIS 324
N L L +S N LSG +P G+ S L L + N LEG++ L ++ L +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 325 GNKLYGPLEFS-SNHSSLRHLFLHNNSLNGNIPHLINEDSXXXXXXXXXXXXXXXIPEPL 383
N L G + SN ++L + L NN L G IP I IP L
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 384 CHLRKLSIVDISCNNLNGSIPSCFTNISLWME------------ESDSFNGFVIWHGILL 431
R L +D++ N NG+IP+ S + ++D G LL
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 432 DASGRRLSRI-KSTSRNKFMAKNR----YESYKGDVLNYMTGLDLSSNELTGDIPSEIGL 486
+ G R ++ + ++RN +R + S D M LD+S N L+G IP EIG
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 487 LQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYN 546
+ L LNL HN SGSIP L+ + +DLS N+L GRIP +S L L ++S N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 547 DLLGPVPNSRQFANFDENNYRGNPLLCGPPV 577
+L GP+P QF F + NP LCG P+
Sbjct: 712 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 216/491 (43%), Gaps = 85/491 (17%)
Query: 81 LEHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWL-LQNNTKLEILFLFNNFL---- 135
L + +I+G+++ F + L +DLS N+L+G + T L + + L+ L + +N L
Sbjct: 81 LSNSHINGSVSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 136 --TGRLHLPDSKR-DLLHLVISNNNFIG-TLPDNFGVILPELVYLDMSQNSFVGSIPPST 191
+G L L + DL IS N +G L D G EL +L +S N G + S
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDVDVSR 195
Query: 192 GYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYL 251
CV+LEF+++S N F I P + + L L +
Sbjct: 196 ---------------------------CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDI 227
Query: 252 SDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVP 311
S N+ +G + L +L++S+N G +P +L L ++ N G++
Sbjct: 228 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDF 285
Query: 312 LSNLQVTRI-LDISGNKLYGPL-EFSSNHSSLRHLFLHNNSLNGNIPHLINEDSXXXXXX 369
LS T LD+SGN YG + F + S L L L +N+ +G +P
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM------------ 333
Query: 370 XXXXXXXXXIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWM----EESDSFNGFVI 425
+ L +R L ++D+S N +G +P TN+S + S++F+G ++
Sbjct: 334 -----------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVL---NYMTGLDLSSNELTGDIPS 482
+ K+T + ++ N + L + + L LS N L+G IPS
Sbjct: 383 PN---------LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 483 EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542
+G L +L L L N G IP+ +K +E++ L +N+L+G IP LS L +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 543 VSYNDLLGPVP 553
+S N L G +P
Sbjct: 494 LSNNRLTGEIP 504
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 190/436 (43%), Gaps = 50/436 (11%)
Query: 7 LVELNLSGNKFDGSLPQCLSNLTYLRVXXXXXXXXXXXXPISVFANLTSLEYLSLSDKKF 66
L L+LSGN F G++P + + L P+ + L+ L LS +F
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 67 QGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQN-NTKL 125
G S+ N+S ++ + +DLS NN +G I L QN L
Sbjct: 353 SGELPESL---------TNLSASLLT----------LDLSSNNFSGPILPNLCQNPKNTL 393
Query: 126 EILFLFNNFLTGRLHLPDSK-RDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFV 184
+ L+L NN TG++ S +L+ L +S N GT+P + G L +L L + N
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 452
Query: 185 GSIPPSTGYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMN-L 243
G IP Y++ GE+P L+ C +L +++LS+N G+I PK++ L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEI-PKWIGRL 510
Query: 244 TQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLP--------HWAGNFSNLD 295
LA L LS+N F+G + L + SL LD++ N+ +G +P A NF
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 296 VLLMSRN--------------SLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS--NHS 339
+ +N +G S L+ L +I+ +++YG + N+
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT-SRVYGGHTSPTFDNNG 629
Query: 340 SLRHLFLHNNSLNGNIPHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRKLSIVDISCNNL 399
S+ L + N L+G IP I IP+ + LR L+I+D+S N L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 400 NGSIPSCFTNISLWME 415
+G IP + +++ E
Sbjct: 690 DGRIPQAMSALTMLTE 705
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 166/382 (43%), Gaps = 54/382 (14%)
Query: 3 ELKNLVELNLSGNKFDGSLPQCLSNLTY--LRVXXXXXXXXXXXXPISVFANLTSLEYLS 60
+++ L L+LS N+F G LP+ L+NL+ L + P +L+ L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 61 LSDKKFQGSFSLSVLANHSRLEHCN-----ISGTIASFLQYQYDLRYIDLSHNNLAGTIP 115
L + F G L+N S L + +SGTI S L LR + L N L G IP
Sbjct: 398 LQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 116 TWL-----------------------LQNNTKLEILFLFNNFLTGRLHLPDSK-RDLLHL 151
L L N T L + L NN LTG + + +L L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 152 VISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPS----TGYMERXXXXXXXXXXX 207
+SNN+F G +P G L++LD++ N F G+IP + +G +
Sbjct: 517 KLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 208 XGELPKQFLTGCVS-LEFM----------------NLSHNLFVGQIFPKYMNLTQLAWLY 250
+ K+ G + LEF N++ ++ G P + N + +L
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 251 LSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSV 310
+S N +G + + + + P L+IL++ +N +SG +P G+ L++L +S N L+G +
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 311 PLSNLQVTRILDISGNKLYGPL 332
+S L + +D+S N L GP+
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPI 717
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 127/273 (46%), Gaps = 16/273 (5%)
Query: 313 SNLQVTRI--LDISGNKLYGPLEFSSNHSSLRHL-FLHNNSLN---GNIPHLINEDSXXX 366
++ Q R+ LD+SG L P S+ ++L +L FL+ +N G IP I + +
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 367 XXXXXXXXXXXXIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIW 426
IP+ L ++ L +D S N L+G++P + SL +F+G I
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFDGNRI- 161
Query: 427 HGILLDASGR--RLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEI 484
G + D+ G +L + SRN+ K ++ L ++ DLS N L GD
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANLNLAFV---DLSRNMLEGDASVLF 217
Query: 485 GLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVS 544
G + ++L+ N + + + + K + +DL N + G +P L++L +L NVS
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 545 YNDLLGPVPNSRQFANFDENNYRGNPLLCGPPV 577
+N+L G +P FD + Y N LCG P+
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 408 TNISLWMEESDSFNGFVIWHGILLDASGR--RLSRIKSTSRNKFMAKNRYESYKGDVLNY 465
T +S W+ +D N W G+L D + R++ + + N + K L Y
Sbjct: 22 TTLSSWLPTTDCCN--RTWLGVLCDTDTQTYRVNNLDLSGLN--LPKPYPIPSSLANLPY 77
Query: 466 MTGLDLSS-NELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNEL 524
+ L + N L G IP I L +LH L ++H + SG+IP S +K + ++D SYN L
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 525 SGRIPLELSELNYLAIFNVSYNDLLGPVPNS 555
SG +P +S L L N + G +P+S
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 106/290 (36%), Gaps = 64/290 (22%)
Query: 21 LPQCLSNLTYLRVXXXXXXXXXXXXPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSR 80
+P L+NL YL A LT L YL ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT------------------ 109
Query: 81 LEHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLH 140
H N+SG I FL L +D S+N L+GT+P +
Sbjct: 110 --HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI---------------------- 145
Query: 141 LPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERXXXX 200
S +L+ + N G +PD++G + +S+N G IPP+ +
Sbjct: 146 --SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV- 202
Query: 201 XXXXXXXXGELPKQFLTGCVSLEF--------MNLSHNLFVGQIFPKYMNLTQLAWLYLS 252
+L + L G S+ F ++L+ N + ++ L L L
Sbjct: 203 ---------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLR 252
Query: 253 DNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRN 302
+N+ G L +GL L+ L+VS N L G++P GN DV + N
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 114/283 (40%), Gaps = 35/283 (12%)
Query: 82 EHCNIS--GTIASFLQYQYDLRYIDLSHNNLAGTIP-TWLLQNNTKLEILFLFN-NFLTG 137
+ CN + G + Y + +DLS NL P L N L L++ N L G
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91
Query: 138 RLHLPDSKRDLLH-LVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMER 196
+ +K LH L I++ N G +PD F + LV LD S N+ G++PPS +
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 197 XXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQF 256
G +P + + M +S N G+I P + NL
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------- 197
Query: 257 TGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDV-SVPLSNL 315
+L +D+S NML G G+ N + +++NSL D+ V LS
Sbjct: 198 ------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-- 243
Query: 316 QVTRILDISGNKLYGPLEFSSNHSSLRH-LFLHNNSLNGNIPH 357
+ LD+ N++YG L H L + N+L G IP
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 6/195 (3%)
Query: 230 NLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAG 289
N VG I P LTQL +LY++ +G + + L +L LD S N LSG LP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 290 NFSNLDVLLMSRNSLEGDVSVPLSNLQVTRI---LDISGNKLYGPLEFSSNHSSLRHLFL 346
+ NL + N + G ++P S +++ + IS N+L G + + + +L + L
Sbjct: 147 SLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 347 HNNSLNGNIPHLINEDSXXXXXXXXXXXXXXXIPEPLCHLRKLSIVDISCNNLNGSIPSC 406
N L G+ L D + + + + L+ +D+ N + G++P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 407 FTNISLWMEESDSFN 421
T + + SFN
Sbjct: 264 LTQLKFLHSLNVSFN 278
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 1 ICELKNLVELNLSGNKFDGSLPQCLSNLTYLRVXXXXXXXXXXXXPISVFANLTSLEYLS 60
I L NLV + GN+ G++P + + L FANL +L ++
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 61 LSDKKFQGSFSLSVLANHSRLEHCNISGTIASF----LQYQYDLRYIDLSHNNLAGTIPT 116
LS +G S+ + + + +++ +F + +L +DL +N + GT+P
Sbjct: 204 LSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 117 WLLQ 120
L Q
Sbjct: 263 GLTQ 266
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 31/164 (18%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLL--NAPSLYILDVSNN 278
S F+N + N+F +F L +L L L N + L+ N SL LDVS N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 279 MLSG----QLPHWAGNFSNLDVLLMSRNSLEGDV-------------------SVP--LS 313
L+ + WA ++ VL +S N L G V S+P ++
Sbjct: 414 SLNSHAYDRTCAWA---ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT 470
Query: 314 NLQVTRILDISGNKLYG-PLEFSSNHSSLRHLFLHNNSLNGNIP 356
+LQ + L+++ N+L P +SL++++LH+N + P
Sbjct: 471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 468 GLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGR 527
L LS N ++ +I L EL L LSHN F + +E +D+S+N L
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115
Query: 528 IPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRG 568
++ L +L ++S+ND +P ++F N + + G
Sbjct: 116 SCCPMASLRHL---DLSFND-FDVLPVCKEFGNLTKLTFLG 152
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 450 MAKNRY-ESYKGDV---LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505
MA N + E++ D+ L +T LDLS +L P+ L L LN+SHN+F
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 506 RSFSILKMIESMDLSYNELSGRIPLELSEL-NYLAIFNVSYND 547
+ L ++ +D S N + EL + LA N++ ND
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 450 MAKNRY-ESYKGDV---LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505
MA N + E++ D+ L +T LDLS +L P+ L L LN+SHN+F
Sbjct: 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535
Query: 506 RSFSILKMIESMDLSYNELSGRIPLELSEL-NYLAIFNVSYNDL 548
+ L ++ +D S N + EL + LA N++ ND
Sbjct: 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNELSG 526
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 450 MAKNRY-ESYKGDV---LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505
MA N + E++ D+ L +T LDLS +L P+ L L LN+SHN+F
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 506 RSFSILKMIESMDLSYNELSGRIPLELSEL-NYLAIFNVSYND 547
+ L ++ +D S N + EL + LA N++ ND
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNELSG 526
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 217 TGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVS 276
T C L+ + N + ++ PK + + LYL NQFT +E L N L ++D+S
Sbjct: 6 TECTCLDTVVRCSNKGL-KVLPKGIP-RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLS 62
Query: 277 NNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS 336
NN +S N + L L++S N L L+ R+L + GN + E +
Sbjct: 63 NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122
Query: 337 NH-SSLRHLFLHNNSL 351
N S+L HL + N L
Sbjct: 123 NDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 466 MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525
+T L L N+ T +P E+ + L ++LS+N S +SFS + + ++ LSYN L
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 526 GRIPLELSELNYLAIFNVSYNDL 548
P L L + ++ ND+
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 449 FMAKNRYESYKGDVLNY--MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPR 506
++ N++ ++ NY +T +DLS+N ++ + +L L LS+N PR
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 507 SFSILKMIESMDLSYNELSGRIPL----ELSELNYLAI 540
+F LK + + L N++S +P +LS L++LAI
Sbjct: 97 TFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI 133
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 461 DVLNYMTGLDLSSNELTGDIPSEIGL--LQELHALNLSHNHFSGSIPRSFSILKMIESMD 518
+ L + LDLS N++ + L L L LNLSHN G ++F +E +D
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Query: 519 LSYNELSGRIPLE-LSELNYLAIFNVSY 545
L++ L P L++L + N++Y
Sbjct: 404 LAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYN 522
L M+ +DLS N LT D + L+ ++ LNL+ N + PR IL +++LS+N
Sbjct: 496 LGKMSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHN 554
Query: 523 EL 524
L
Sbjct: 555 PL 556
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 20/160 (12%)
Query: 389 LSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNK 448
L I+D+S N I F+N + +S +F+ ++ H I+ +G IK +N
Sbjct: 206 LEILDVSGNGWTVDITGNFSNA---ISKSQAFS-LILAHHIM--GAGFGFHNIKDPDQNT 259
Query: 449 FMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSF 508
F R + + LDLS + L++L LNL++N + +F
Sbjct: 260 FAGLAR---------SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 509 SILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDL 548
L ++ ++LSYN L EL N+ + V+Y DL
Sbjct: 311 YGLDNLQVLNLSYNLLG-----ELYSSNFYGLPKVAYIDL 345
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 493 LNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPV 552
L+LSH R F LK ++ ++L+YN+++ L+ L + N+SYN LLG +
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGEL 329
Query: 553 PNS 555
+S
Sbjct: 330 YSS 332
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 81/218 (37%), Gaps = 64/218 (29%)
Query: 103 IDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTL 162
+DLSHNNL+ W T L L L +N L NFI +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL---------------------NFISS- 81
Query: 163 PDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERXXXXXXXXXXXXGELPKQFLTGCVSL 222
+ F V +P L YLD+S N L + + +L
Sbjct: 82 -EAF-VPVPNLRYLDLSSNHL-------------------------HTLDEFLFSDLQAL 114
Query: 223 EFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNA---PSLYILDVSNNM 279
E + L +N V + ++ QL LYLS NQ + E + + P L +LD+S+N
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174
Query: 280 LSG-------QLPHWAGNFSNLDVLLMSRNSLEGDVSV 310
L +LP W N L + N LE D +
Sbjct: 175 LKKLPLTDLQKLPAWVKN-----GLYLHNNPLECDCKL 207
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 99 DLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFL--TGRLHLPDSKRDLLHLVISNN 156
+LRY+DLS N+L T+ +L + LE+L L+NN + R D + L L +S N
Sbjct: 89 NLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQN 146
Query: 157 NFIGTLPDNF---GVILPELVYLDMSQNSF 183
I P G LP+L+ LD+S N
Sbjct: 147 Q-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 469 LDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYN---ELS 525
LDL +N++T + L+ LH L L +N S P +F+ L +E + LS N EL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 526 GRIPLELSEL 535
++P L EL
Sbjct: 117 EKMPKTLQEL 126
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 240 YMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLM 299
+ + +L+++ ++D T + +GL PSL L + N ++ +NL L +
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 300 SRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNG 353
S NS+ + L+N R L ++ NKL ++H ++ ++LHNN+++
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 469 LDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYN---ELS 525
LDL +N++T + L+ LH L L +N S P +F+ L +E + LS N EL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 526 GRIPLELSEL 535
++P L EL
Sbjct: 117 EKMPKTLQEL 126
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 240 YMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLM 299
+ + +L+++ ++D T + +GL PSL L + N ++ +NL L +
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 300 SRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNG 353
S NS+ + L+N R L ++ NKL ++H ++ ++LHNN+++
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 239 KYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWA-GNFSNLDVL 297
+ NL L +L LS N+ G ++ P L +LDV+ L + PH N L VL
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 298 LMSRNSLEGDVSVPLSNLQVTRILDISGN 326
+S L+ L+ LQ R L++ GN
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 31/131 (23%)
Query: 450 MAKNRYESYKGDVLNYMT---GLDLSSNELTGDIPSEIGLLQELHALNLSHNHF------ 500
+ K+R+ T LDL++ L G +PS I + L L L+ N F
Sbjct: 260 LQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQI 318
Query: 501 -SGSIP------------------RSFSILKMIESMDLSYN--ELSGRIPLELSELNYLA 539
+ S P R L+ ++ +DLS++ E S L+L L +L
Sbjct: 319 NAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQ 378
Query: 540 IFNVSYNDLLG 550
N+SYN+ LG
Sbjct: 379 YLNLSYNEPLG 389
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 3/153 (1%)
Query: 173 LVYLDMSQNSFVGSIPPSTGYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNLF 232
L LD+S N+ + S+ P+T + EL G +L+++ L N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 233 VGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFS 292
+ +L L L+L N+ + E SL L + N ++ PH +
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 293 NLDVLLMSRNSLEG---DVSVPLSNLQVTRILD 322
L L + N+L + PL LQ R+ D
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLND 233
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 3/153 (1%)
Query: 173 LVYLDMSQNSFVGSIPPSTGYMERXXXXXXXXXXXXGELPKQFLTGCVSLEFMNLSHNLF 232
L LD+S N+ + S+ P+T + EL G +L+++ L N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 233 VGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFS 292
+ +L L L+L N+ + E SL L + N ++ PH +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 293 NLDVLLMSRNSLEG---DVSVPLSNLQVTRILD 322
L L + N+L + PL LQ R+ D
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 466 MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525
+ LDLS+N +T S++ L AL L+ N + SFS L +E +DLSYN LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 466 MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525
+ LDLS+N +T S++ L AL L+ N + SFS L +E +DLSYN LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 475 ELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSE 534
++ D+P+ I +L NL+HN +F+ + S+D+ +N +S P +
Sbjct: 28 QVPDDLPTNITVL------NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 81
Query: 535 LNYLAIFNVSYNDL 548
L L + N+ +N+L
Sbjct: 82 LPMLKVLNLQHNEL 95
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 475 ELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSE 534
++ D+P+ I +L NL+HN +F+ + S+D+ +N +S P +
Sbjct: 18 QVPDDLPTNITVL------NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71
Query: 535 LNYLAIFNVSYNDL 548
L L + N+ +N+L
Sbjct: 72 LPMLKVLNLQHNEL 85
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 475 ELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSE 534
++ D+P+ I +L NL+HN +F+ + S+D+ +N +S P +
Sbjct: 23 QVPDDLPTNITVL------NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 76
Query: 535 LNYLAIFNVSYNDL 548
L L + N+ +N+L
Sbjct: 77 LPMLKVLNLQHNEL 90
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 428 GILLDASGRRLSR----IKSTSRNKFMAKNRYESYKG---DVLNYMTGLDLSSNELTGDI 480
G +D SG+ L+ I +T++ ++ NR + D L +T LDL +N+LT
Sbjct: 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 481 PSEIGLLQELHALNLSHNHFSGSIPR 506
L +L L+L+ N SIPR
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLK-SIPR 95
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3CVM|A Chain A, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
pdb|3CVM|B Chain B, High Resolution Structure Of A Stable Plasminogen
Activator Inhibitor Type-1 In Its Protease Cleaved Form
Length = 392
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 264 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 309
>pdb|3UT3|A Chain A, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|B Chain B, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|C Chain C, A Novel Pai-i Inhibitor And Its Structural Mechanism
pdb|3UT3|D Chain D, A Novel Pai-i Inhibitor And Its Structural Mechanism
Length = 375
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 247 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 292
>pdb|1DVM|A Chain A, Active Form Of Human Pai-1
pdb|1DVM|B Chain B, Active Form Of Human Pai-1
pdb|1DVM|C Chain C, Active Form Of Human Pai-1
pdb|1DVM|D Chain D, Active Form Of Human Pai-1
pdb|3PB1|I Chain I, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 379
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|1DB2|A Chain A, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
pdb|1DB2|B Chain B, Crystal Structure Of Native Plasminogen Activator
Inhibitor- 1
Length = 377
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNLD-VLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 249 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 294
>pdb|3R4L|A Chain A, Human Very Long Half Life Plasminogen Activator Inhibitor
Type-1
Length = 379
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|3Q02|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q02|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|A Chain A, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation.
pdb|3Q03|B Chain B, Crystal Structure Of Plasminogen Activator Inhibitor-1 In
A Metastable Active Conformation
Length = 379
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|3EOX|A Chain A, High Quality Structure Of Cleaved Pai-1-Stab
Length = 379
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNLD-VLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|1B3K|A Chain A, Plasminogen Activator Inhibitor-1
pdb|1B3K|B Chain B, Plasminogen Activator Inhibitor-1
pdb|1B3K|C Chain C, Plasminogen Activator Inhibitor-1
pdb|1B3K|D Chain D, Plasminogen Activator Inhibitor-1
pdb|1OC0|A Chain A, Plasminogen Activator Inhibitor-1 Complex With Somatomedin
B Domain Of Vitronectin
Length = 379
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|1A7C|A Chain A, Human Plasminogen Activator Inhibitor Type-1 In Complex
With A Pentapeptide
Length = 379
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|1DVN|A Chain A, Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
pdb|1LJ5|A Chain A, 1.8a Resolution Structure Of Latent Plasminogen Activator
Inhibitor-1(Pai-1)
Length = 379
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|1C5G|A Chain A, Plasminogen Activator Inhibitor-1
Length = 402
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNLD-VLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 274 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 319
>pdb|4AQH|A Chain A, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|B Chain B, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
pdb|4AQH|C Chain C, Plasminogen Activator Inhibitor Type-1 In Complex With The
Inhibitor Az3976
Length = 383
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 255 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 300
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 479 DIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYL 538
D+PS I +L NL+HN P +F+ + +D +N +S P L L
Sbjct: 22 DLPSNITVL------NLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 539 AIFNVSYNDL 548
+ N+ +N+L
Sbjct: 76 KVLNLQHNEL 85
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|9PAI|A Chain A, Cleaved Substrate Variant Of Plasminogen Activator
Inhibitor-1
Length = 346
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 277 NNMLSGQL-PHWAGNFSNL-DVLLMSRNSLEGDVSV--PLSNLQVT 318
N+LS QL HW GN + L +L++ + SLE +V + PL NL +T
Sbjct: 251 TNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMT 296
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 428 GILLDASGRRLSR----IKSTSRNKFMAKNRYESYKG---DVLNYMTGLDLSSNELTGDI 480
G +D SG+ L+ I +T++ ++ N+ + D L +T LDL +N+LT
Sbjct: 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 481 PSEIGLLQELHALNLSHNHFSGSIPR-SFSILKMI 514
L +L L+L+ N SIPR +F LK +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSL 104
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANND 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 102 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 160
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 161 LT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLN-APSLYILDVSNNM 279
+L +++S N L +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 280 LSGQLPHWAGN-FSNLDVLLMSRNSL 304
L+ +LP N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 467 TGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYN---E 523
T LDL +N+++ + LQ L+AL L +N S ++FS L+ ++ + +S N E
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 524 LSGRIPLELSEL 535
+ +P L EL
Sbjct: 117 IPPNLPSSLVEL 128
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 428 GILLDASGRRLSR----IKSTSRNKFMAKNRYESYKG---DVLNYMTGLDLSSNELTGDI 480
G +D SG+ L+ I +T++ ++ N+ + D L +T LDL +N+LT
Sbjct: 19 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 481 PSEIGLLQELHALNLSHNHFSGSIPR-SFSILKMI 514
L +L L+L+ N SIPR +F LK +
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSL 112
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 474 NELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSF-SILKMIESMDLSYNELSGRIP--L 530
N+L G +P+ G +L +LNL++N + IP +F + +E++ ++N+L IP
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396
Query: 531 ELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRG 568
+ ++ + + SYN+ +G V + + F D ++G
Sbjct: 397 DAKSVSVXSAIDFSYNE-IGSV-DGKNFDPLDPTPFKG 432
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNEL 524
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNELSG 526
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNEL 524
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNEL 524
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 450 MAKNRYESYKGDVLNYMTGLD---LSSNELTGDIPSEIGLLQELHALNLSHNHFSGSI-P 505
++K++ + V ++ T L+ L+ NE+ + L L LNLS N F GSI
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS 340
Query: 506 RSFSILKMIESMDLSYNELSG 526
R F L +E +DLSYN +
Sbjct: 341 RMFENLDKLEVLDLSYNHIRA 361
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 449 FMAKNRYESYKGDVLNYMTGLD---LSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505
+ N+ +S V + +T L L N+L L L LNL+HN S+P
Sbjct: 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLP 149
Query: 506 RS-FSILKMIESMDLSYNELS 525
+ F L + +DLSYN+L
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQ 170
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNEL 524
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 484 IGLLQELHALNLSHNHF-SGSIPRSFSILKMIESMDLSYNEL 524
IG L+ L LN++HN S +P FS L +E +DLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
Query: 329 YGP------LEFSSNHSSLRHLFLHNNSL 351
+GP ++F S H+ L HL+LHNN L
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
Query: 329 YGP------LEFSSNHSSLRHLFLHNNSL 351
+GP ++F S H+ L HL+LHNN L
Sbjct: 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,804,112
Number of Sequences: 62578
Number of extensions: 697062
Number of successful extensions: 2271
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 368
length of query: 659
length of database: 14,973,337
effective HSP length: 105
effective length of query: 554
effective length of database: 8,402,647
effective search space: 4655066438
effective search space used: 4655066438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)