Query 042632
Match_columns 659
No_of_seqs 710 out of 4860
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-61 2.4E-66 565.0 42.8 540 4-576 68-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.6E-56 1.6E-60 516.0 41.7 512 28-576 68-588 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.6E-45 5.5E-50 346.9 -15.2 474 6-572 46-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 2E-40 4.3E-45 327.6 8.6 376 146-577 78-457 (873)
5 KOG4194 Membrane glycoprotein 100.0 4E-40 8.6E-45 325.4 8.3 344 32-400 55-405 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 6.9E-43 1.5E-47 330.5 -10.8 464 27-583 43-529 (565)
7 KOG0618 Serine/threonine phosp 100.0 9.3E-38 2E-42 324.9 -4.4 438 7-547 47-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.7E-37 5.9E-42 321.5 -3.1 466 6-573 22-490 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.6E-36 9.9E-41 298.7 -4.0 365 4-400 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1E-35 2.3E-40 296.2 -1.7 366 29-525 7-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.7E-27 3.6E-32 226.1 -2.1 252 147-400 68-359 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.2E-23 2.6E-28 245.6 27.9 341 114-524 549-905 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.4E-23 3.1E-28 245.0 26.9 341 90-499 550-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 1.5E-26 3.3E-31 219.6 -2.8 416 13-522 54-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 3.7E-22 8.1E-27 216.1 17.8 80 465-553 383-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 4.6E-22 1E-26 215.3 17.8 268 171-535 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.7E-20 1E-24 201.3 12.3 245 197-525 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.5E-20 1.2E-24 200.8 12.6 246 172-501 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 8.5E-20 1.8E-24 185.9 1.6 85 463-547 220-318 (319)
20 KOG0617 Ras suppressor protein 99.7 3.1E-20 6.8E-25 156.7 -3.9 178 337-572 31-212 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-19 6E-24 182.1 0.0 279 225-571 3-319 (319)
22 KOG0617 Ras suppressor protein 99.7 6.2E-19 1.4E-23 148.9 -3.4 184 312-553 29-216 (264)
23 PLN03150 hypothetical protein; 99.6 2.6E-15 5.5E-20 164.0 10.7 118 465-582 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 5.4E-14 1.2E-18 140.9 -3.1 172 319-551 78-249 (722)
25 PLN03150 hypothetical protein; 99.3 1.1E-11 2.3E-16 135.8 12.1 114 388-554 419-533 (623)
26 COG4886 Leucine-rich repeat (L 99.3 4.8E-12 1E-16 132.6 8.6 180 316-555 116-296 (394)
27 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.8E-18 138.3 -4.1 176 337-573 73-248 (722)
28 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.5E-16 129.7 8.0 200 33-264 97-297 (394)
29 KOG3207 Beta-tubulin folding c 99.2 2.6E-12 5.7E-17 125.2 1.2 137 144-281 195-339 (505)
30 KOG1259 Nischarin, modulator o 99.2 2.4E-12 5.2E-17 119.1 0.6 132 362-552 283-415 (490)
31 KOG3207 Beta-tubulin folding c 99.2 2.7E-12 6E-17 125.0 0.1 210 27-258 119-340 (505)
32 PF14580 LRR_9: Leucine-rich r 99.2 3.1E-11 6.8E-16 107.8 6.2 88 25-138 15-103 (175)
33 KOG1259 Nischarin, modulator o 99.2 7.3E-12 1.6E-16 116.0 1.4 131 337-526 282-413 (490)
34 PF14580 LRR_9: Leucine-rich r 99.1 4.4E-11 9.5E-16 106.8 4.6 109 4-138 18-128 (175)
35 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.5E-16 117.6 -0.5 135 266-400 155-311 (382)
36 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4.1E-16 116.1 -0.4 136 241-376 154-311 (382)
37 KOG0531 Protein phosphatase 1, 98.9 9.3E-11 2E-15 122.9 -1.3 224 265-553 92-322 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 8E-10 1.7E-14 81.1 3.7 59 465-523 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 8.2E-10 1.8E-14 81.0 3.8 61 488-548 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.9 1E-10 2.2E-15 122.7 -2.2 247 26-308 69-321 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.9 1.3E-09 2.8E-14 121.9 5.7 270 5-305 523-807 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.9 2.3E-09 4.9E-14 120.1 6.2 56 463-518 769-825 (889)
43 KOG1859 Leucine-rich repeat pr 98.7 5.5E-10 1.2E-14 115.6 -5.9 105 463-573 186-293 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.6 2.1E-09 4.5E-14 100.0 -3.4 60 193-254 311-373 (419)
45 KOG4579 Leucine-rich repeat (L 98.5 9.4E-09 2E-13 84.5 -2.5 61 463-525 76-136 (177)
46 KOG1859 Leucine-rich repeat pr 98.5 2.4E-09 5.3E-14 110.9 -7.5 58 340-400 165-222 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.4 6.8E-08 1.5E-12 88.9 1.4 245 4-281 29-316 (388)
48 KOG2982 Uncharacterized conser 98.3 2.4E-07 5.2E-12 86.5 1.9 82 195-276 199-287 (418)
49 KOG2120 SCF ubiquitin ligase, 98.3 2.7E-08 5.9E-13 92.7 -4.9 86 148-233 187-273 (419)
50 KOG2982 Uncharacterized conser 98.3 6E-07 1.3E-11 83.9 3.6 186 96-281 69-262 (418)
51 KOG4579 Leucine-rich repeat (L 98.1 1.1E-07 2.4E-12 78.3 -3.8 81 149-233 56-136 (177)
52 PF12799 LRR_4: Leucine Rich r 98.0 4.4E-06 9.5E-11 55.8 3.2 36 6-42 2-37 (44)
53 COG5238 RNA1 Ran GTPase-activa 98.0 8.8E-07 1.9E-11 81.7 -0.5 16 121-136 28-43 (388)
54 PF12799 LRR_4: Leucine Rich r 98.0 5.1E-06 1.1E-10 55.5 3.1 36 465-501 2-37 (44)
55 PRK15386 type III secretion pr 97.9 4.4E-05 9.5E-10 77.1 9.9 33 463-498 155-187 (426)
56 KOG1644 U2-associated snRNP A' 97.9 2.1E-05 4.5E-10 69.9 6.2 83 30-136 43-126 (233)
57 PRK15386 type III secretion pr 97.8 0.00012 2.6E-09 74.0 10.1 138 312-523 48-188 (426)
58 KOG1644 U2-associated snRNP A' 97.8 4.2E-05 9.1E-10 67.9 5.5 10 315-324 139-148 (233)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 4E-10 86.8 3.0 135 98-236 122-266 (699)
60 KOG4341 F-box protein containi 97.6 2.3E-06 5E-11 84.0 -4.7 280 6-304 139-438 (483)
61 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5E-10 86.0 2.2 90 94-186 169-265 (699)
62 PF13306 LRR_5: Leucine rich r 97.6 0.00017 3.7E-09 62.1 7.3 105 167-277 8-112 (129)
63 KOG4341 F-box protein containi 97.6 2.7E-06 6E-11 83.4 -4.9 153 242-394 292-459 (483)
64 PF13306 LRR_5: Leucine rich r 97.5 0.00029 6.2E-09 60.7 6.8 106 190-301 7-112 (129)
65 KOG2123 Uncharacterized conser 97.1 3.2E-05 7E-10 72.0 -3.7 102 4-129 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00035 7.5E-09 65.1 2.4 108 25-155 39-152 (260)
67 KOG1947 Leucine rich repeat pr 96.6 0.00025 5.5E-09 76.6 -2.4 64 193-256 241-307 (482)
68 KOG2739 Leucine-rich acidic nu 96.6 0.0012 2.6E-08 61.6 2.1 15 243-257 90-104 (260)
69 KOG1947 Leucine rich repeat pr 96.5 0.00048 1E-08 74.4 -0.9 39 96-134 241-280 (482)
70 KOG2123 Uncharacterized conser 96.5 0.00016 3.4E-09 67.5 -4.2 84 28-137 18-102 (388)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0068 1.5E-07 33.5 0.8 12 490-501 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.007 1.5E-07 33.4 0.8 18 514-532 2-19 (22)
73 KOG0473 Leucine-rich repeat pr 93.6 0.0028 6.1E-08 57.8 -5.2 84 463-549 41-124 (326)
74 smart00370 LRR Leucine-rich re 93.5 0.082 1.8E-06 30.5 2.5 23 28-51 1-23 (26)
75 smart00369 LRR_TYP Leucine-ric 93.5 0.082 1.8E-06 30.5 2.5 23 28-51 1-23 (26)
76 PF13504 LRR_7: Leucine rich r 93.5 0.046 1E-06 27.9 1.3 13 30-42 2-14 (17)
77 KOG0473 Leucine-rich repeat pr 92.8 0.0023 5E-08 58.4 -7.2 87 24-135 37-123 (326)
78 PF13504 LRR_7: Leucine rich r 92.6 0.077 1.7E-06 27.1 1.3 13 99-111 2-14 (17)
79 smart00370 LRR Leucine-rich re 91.4 0.19 4.2E-06 28.9 2.3 22 97-119 1-22 (26)
80 smart00369 LRR_TYP Leucine-ric 91.4 0.19 4.2E-06 28.9 2.3 22 97-119 1-22 (26)
81 KOG4308 LRR-containing protein 90.9 0.0036 7.8E-08 66.0 -9.5 113 170-282 171-304 (478)
82 KOG4308 LRR-containing protein 90.8 0.002 4.4E-08 67.9 -11.4 90 145-234 203-304 (478)
83 KOG3864 Uncharacterized conser 90.7 0.05 1.1E-06 49.0 -1.0 82 465-546 102-186 (221)
84 KOG3864 Uncharacterized conser 87.8 0.073 1.6E-06 47.9 -2.1 79 294-372 103-185 (221)
85 PF13516 LRR_6: Leucine Rich r 87.4 0.18 3.9E-06 28.4 0.1 16 512-527 2-17 (24)
86 smart00365 LRR_SD22 Leucine-ri 74.9 2.6 5.7E-05 24.3 1.8 13 30-42 3-15 (26)
87 smart00364 LRR_BAC Leucine-ric 71.8 2.8 6E-05 24.1 1.4 13 489-501 3-15 (26)
88 PF12273 RCR: Chitin synthesis 68.7 4.6 0.0001 34.4 2.8 13 610-622 4-16 (130)
89 KOG3763 mRNA export factor TAP 65.9 4.8 0.0001 42.4 2.7 14 171-184 270-283 (585)
90 smart00368 LRR_RI Leucine rich 62.4 6.7 0.00015 23.0 1.8 13 6-18 3-15 (28)
91 KOG4242 Predicted myosin-I-bin 62.0 32 0.00069 35.8 7.6 61 465-525 414-481 (553)
92 KOG4242 Predicted myosin-I-bin 61.0 39 0.00085 35.2 8.0 89 28-136 164-254 (553)
93 TIGR00864 PCC polycystin catio 57.6 4.7 0.0001 51.0 1.1 38 518-555 1-38 (2740)
94 PRK00523 hypothetical protein; 55.5 26 0.00057 25.9 4.2 31 607-637 5-35 (72)
95 KOG3763 mRNA export factor TAP 52.6 8.3 0.00018 40.7 1.8 81 96-177 216-307 (585)
96 PRK01844 hypothetical protein; 52.1 31 0.00068 25.5 4.1 29 609-637 6-34 (72)
97 TIGR00864 PCC polycystin catio 50.9 7.4 0.00016 49.3 1.3 33 494-526 1-33 (2740)
98 PF01102 Glycophorin_A: Glycop 50.5 20 0.00044 29.9 3.4 21 608-628 67-87 (122)
99 PF08374 Protocadherin: Protoc 45.0 21 0.00046 32.7 2.9 27 602-628 35-61 (221)
100 PF02439 Adeno_E3_CR2: Adenovi 43.6 42 0.00092 21.3 3.2 6 610-615 12-17 (38)
101 PF15176 LRR19-TM: Leucine-ric 41.8 49 0.0011 26.2 4.1 11 609-619 18-28 (102)
102 smart00367 LRR_CC Leucine-rich 41.5 19 0.00042 20.5 1.5 12 29-40 2-13 (26)
103 PF07204 Orthoreo_P10: Orthore 41.0 33 0.00071 26.7 2.9 28 605-632 42-69 (98)
104 PF15050 SCIMP: SCIMP protein 40.4 45 0.00098 27.3 3.8 9 607-615 9-17 (133)
105 PF12606 RELT: Tumour necrosis 39.5 29 0.00062 23.7 2.2 27 616-642 10-36 (50)
106 PRK14762 membrane protein; Pro 39.2 49 0.0011 18.6 2.6 20 606-625 4-23 (27)
107 PF15102 TMEM154: TMEM154 prot 35.8 14 0.00031 31.6 0.4 20 614-633 68-87 (146)
108 PF00558 Vpu: Vpu protein; In 33.5 37 0.0008 25.9 2.2 24 620-643 20-43 (81)
109 PF06716 DUF1201: Protein of u 33.2 1.1E+02 0.0024 20.2 3.9 21 607-627 8-28 (54)
110 PF11980 DUF3481: Domain of un 26.3 64 0.0014 24.6 2.4 29 605-633 16-45 (87)
111 PF12273 RCR: Chitin synthesis 24.2 75 0.0016 27.0 2.9 21 605-625 2-22 (130)
112 PF04478 Mid2: Mid2 like cell 23.1 30 0.00065 29.9 0.2 7 609-615 55-61 (154)
113 PF10725 DUF2517: Protein of u 22.3 53 0.0011 23.2 1.2 29 617-645 19-47 (63)
114 PF12191 stn_TNFRSF12A: Tumour 21.4 42 0.00092 27.8 0.7 14 622-635 96-109 (129)
115 PF05393 Hum_adeno_E3A: Human 21.2 1E+02 0.0022 23.7 2.6 26 613-638 43-68 (94)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-61 Score=564.97 Aligned_cols=540 Identities=33% Similarity=0.495 Sum_probs=477.8
Q ss_pred CCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCC--C
Q 042632 4 LKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSR--L 81 (659)
Q Consensus 4 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~--L 81 (659)
..+++.|+|++|.+++..+.+|..+++|++|+|++|++.+.+|...+..+++|++|++++|.+++..+...+.++.. |
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 35789999999999999999999999999999999999989997777799999999999999998877655555544 4
Q ss_pred ccccccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccc-cCCCCCCCCccEEEcccCcCcc
Q 042632 82 EHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR-LHLPDSKRDLLHLVISNNNFIG 160 (659)
Q Consensus 82 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~ 160 (659)
++|.+++..|..++++++|++|++++|.+.+.+|..+. ++++|++|++++|.+++. +.....+++|++|++++|++.+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 48889888999999999999999999999888888765 899999999999998764 2333478999999999999998
Q ss_pred cCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCC
Q 042632 161 TLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKY 240 (659)
Q Consensus 161 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 240 (659)
.+|..+.. +++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+
T Consensus 227 ~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 227 EIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred cCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhH
Confidence 99998875 9999999999999998999999999999999999999987888775 688999999999999998889889
Q ss_pred CCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcE
Q 042632 241 MNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRI 320 (659)
Q Consensus 241 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 320 (659)
.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|++.+..|..+..+++|+.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 99999999999999999999999999999999999999999899999999999999999999999889999999999999
Q ss_pred EEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcC
Q 042632 321 LDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNL 399 (659)
Q Consensus 321 L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 399 (659)
|++++|.+.+..+... .+++|+.|++++|++++..|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 9999999987766544 789999999999999999999999999999999999999998888888999999999999999
Q ss_pred CcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCccc
Q 042632 400 NGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGD 479 (659)
Q Consensus 400 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 479 (659)
.+.+|..+.. .. ...++.+++++..... .....+++|+.|+|++|++++.
T Consensus 465 ~~~~p~~~~~-~~---------------L~~L~ls~n~l~~~~~--------------~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 465 FGGLPDSFGS-KR---------------LENLDLSRNQFSGAVP--------------RKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred eeecCccccc-cc---------------ceEEECcCCccCCccC--------------hhhhhhhccCEEECcCCcceee
Confidence 9888875532 11 1122333333221100 0012377899999999999999
Q ss_pred CChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCC
Q 042632 480 IPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFA 559 (659)
Q Consensus 480 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 559 (659)
+|+.++.+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|+.+++++|+++|.+|...++.
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 594 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCccCCCCCCCCCC
Q 042632 560 NFDENNYRGNPLLCGPP 576 (659)
Q Consensus 560 ~l~~~~~~~N~~~c~~~ 576 (659)
++....+.|||.+|+.+
T Consensus 595 ~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 595 AINASAVAGNIDLCGGD 611 (968)
T ss_pred ccChhhhcCCccccCCc
Confidence 99999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-56 Score=515.97 Aligned_cols=512 Identities=29% Similarity=0.456 Sum_probs=438.0
Q ss_pred CCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCc-----cccccccchhhhhCCCCCCE
Q 042632 28 LTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLE-----HCNISGTIASFLQYQYDLRY 102 (659)
Q Consensus 28 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-----~~~l~~~~~~~l~~l~~L~~ 102 (659)
..+++.|+|++|.+.+.++ ..|..+++|++|+|++|++.+.++...+.++.+|+ +|++++.+|. +.+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 3579999999999998887 88999999999999999999887766655555444 6777766664 46789999
Q ss_pred EEccCccccccCchHHhhcCCCCCEEEccCcccccc-cCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccC
Q 042632 103 IDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR-LHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQN 181 (659)
Q Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 181 (659)
|++++|.+++.+|..+. .+++|++|++++|.+.+. +.....+++|++|++++|.+.+.+|..+.. +++|++|++++|
T Consensus 145 L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n 222 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYN 222 (968)
T ss_pred EECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCC
Confidence 99999999878887764 899999999999988754 223347889999999999998888888875 899999999999
Q ss_pred cccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcccc
Q 042632 182 SFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLE 261 (659)
Q Consensus 182 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 261 (659)
.+.+..|..++.+++|++|++++|.+.+.+|..+ ..+++|++|++++|++.+..|..+.++++|++|++++|.+.+..|
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 9988889999999999999999999987788764 788999999999999988888888899999999999999988888
Q ss_pred ccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CCCC
Q 042632 262 EGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NHSS 340 (659)
Q Consensus 262 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~ 340 (659)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+... .+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 889999999999999999998889999999999999999999988888888899999999999999887665544 6788
Q ss_pred CcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCC
Q 042632 341 LRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSF 420 (659)
Q Consensus 341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 420 (659)
|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++.+|..+..++.+...
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L---- 457 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML---- 457 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE----
Confidence 9999999999998899999999999999999999998889889999999999999999998888776655433221
Q ss_pred CCceeeccccccccCCcccc-cccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCc
Q 042632 421 NGFVIWHGILLDASGRRLSR-IKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNH 499 (659)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 499 (659)
+.+++.+.. ++. ....++|+.||+++|++++..|..+..+++|+.|+|++|+
T Consensus 458 -----------~L~~n~~~~~~p~----------------~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 458 -----------SLARNKFFGGLPD----------------SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510 (968)
T ss_pred -----------ECcCceeeeecCc----------------ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence 122221110 000 0114689999999999999999999999999999999999
Q ss_pred CcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 500 FSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 500 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
+++.+|+.+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+.++..+++++|+..+..|
T Consensus 511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999998876 667889999999999987544
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-45 Score=346.91 Aligned_cols=474 Identities=28% Similarity=0.362 Sum_probs=337.8
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcccc
Q 042632 6 NLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCN 85 (659)
Q Consensus 6 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~ 85 (659)
.++.+++++|.++ .+-+++.++..|.+|++++|++. ++| .+++.+..++.++.++|++.
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls------------------ 104 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS------------------ 104 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh------------------
Confidence 4566777777777 45556777778888888888877 777 67777888888888877766
Q ss_pred ccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChh
Q 042632 86 ISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDN 165 (659)
Q Consensus 86 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 165 (659)
.+|..+..+.+|+.+++++|.+. ++|+.++ .+..|+.++..+|++...+.....+.++..+++.+|++. ..|..
T Consensus 105 ---~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~ 178 (565)
T KOG0472|consen 105 ---ELPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPEN 178 (565)
T ss_pred ---hccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHH
Confidence 46777777778888888888887 7777766 677788888888888777666667777777788888776 44444
Q ss_pred hhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCC
Q 042632 166 FGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQ 245 (659)
Q Consensus 166 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 245 (659)
... ++.|++||...|.+. .+|+.++.+.+|..|++.+|++. .+|+ |.+|..|.+++++.|.|.-...+...++++
T Consensus 179 ~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 179 HIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNS 253 (565)
T ss_pred HHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhccccc
Confidence 443 777888888777776 67777888888888888888887 7774 577777888888888777555555567777
Q ss_pred CCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCC-----CCCCcE
Q 042632 246 LAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSN-----LQVTRI 320 (659)
Q Consensus 246 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~ 320 (659)
+..||+++|+++ ..|+.+.-+++|++||+++|.++ ..|..++++ .|+.|.+.||.+..+-.+.+.+ ++.|+.
T Consensus 254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred ceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 888888888877 66777777778888888888887 567777777 7778888887765221111110 011111
Q ss_pred ----EEccCCc---C------cCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCC---CceEecCCCcccccCCcccc
Q 042632 321 ----LDISGNK---L------YGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSN---LRALLLRGNNLQGNIPEPLC 384 (659)
Q Consensus 321 ----L~l~~n~---l------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~ 384 (659)
=.++.-. - .+..+.....-+.+.|++++-+++. +|........ .+..++++|++. ++|..+.
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~ 408 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV 408 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhH
Confidence 0000000 0 0011111134567788888888884 4443322223 788899999988 7777776
Q ss_pred CCCCCcE-EEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccc
Q 042632 385 HLRKLSI-VDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVL 463 (659)
Q Consensus 385 ~l~~L~~-L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 463 (659)
.+..+.+ +.+++|.+. .+|..+.. +
T Consensus 409 ~lkelvT~l~lsnn~is-fv~~~l~~-----------------------------------------------------l 434 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKIS-FVPLELSQ-----------------------------------------------------L 434 (565)
T ss_pred HHHHHHHHHHhhcCccc-cchHHHHh-----------------------------------------------------h
Confidence 6665554 455555553 66655544 5
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEec
Q 042632 464 NYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNV 543 (659)
Q Consensus 464 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 543 (659)
++|+.|+|++|-+. .+|..++.+..|+.||+|+|++. .+|..+..+..||.+-.++|++....|+.+.+|.+|.+||+
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 67888888888887 78888888888888888888887 78888888888888888888888777777888888888888
Q ss_pred cCCccccCCCCCCCCCCCCcCccCCCCCC
Q 042632 544 SYNDLLGPVPNSRQFANFDENNYRGNPLL 572 (659)
Q Consensus 544 ~~N~l~~~~p~~~~~~~l~~~~~~~N~~~ 572 (659)
.+|.+...+|..+.++.+..+.+.|||+-
T Consensus 513 ~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 513 QNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCCchhhCChhhccccceeEEEecCCccC
Confidence 88888887777788888888888888886
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-40 Score=327.58 Aligned_cols=376 Identities=22% Similarity=0.216 Sum_probs=288.5
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEE
Q 042632 146 RDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFM 225 (659)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 225 (659)
+.-+.|++++|.+...-+. ++..+++|+++++..|.++ .+|.......+|+.|+|.+|.|+ ++..+-++.++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~-~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFE-FFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHH-HHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhh
Confidence 3445677777777644343 3445888888888888887 67776666677888888888887 7777667788888888
Q ss_pred EccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCccc
Q 042632 226 NLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLE 305 (659)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 305 (659)
||+.|.|+.+....|..-.++++|+|++|.|+......|..+.+|.+|.|+.|+++...+..|.++++|+.|++..|++.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 88888888777777877788888888888888777778888888888888888888666677777888888888888887
Q ss_pred ccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCcccc
Q 042632 306 GDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLC 384 (659)
Q Consensus 306 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 384 (659)
..-...|.++++|+.|.+..|.+.......+ .+.++++|+|+.|++...-..++.+++.|+.|+++.|.|..+-++++.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 5556678888888888888888877655554 788888888888888876677888888888888888888877778888
Q ss_pred CCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccc
Q 042632 385 HLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLN 464 (659)
Q Consensus 385 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 464 (659)
.+++|+.|+|++|+|+..-+..|.. +.
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~-----------------------------------------------------L~ 341 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRV-----------------------------------------------------LS 341 (873)
T ss_pred hcccceeEeccccccccCChhHHHH-----------------------------------------------------HH
Confidence 8888888888888888555555544 56
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCC---ccccccCCCCEEECcCCcccccCChhhhcCCCCCeE
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP---RSFSILKMIESMDLSYNELSGRIPLELSELNYLAIF 541 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 541 (659)
.|++|+|++|.++......|..+++|++|||++|.++..+. ..|..|++|+.|++.+|++..+....|.+++.|+.|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 77888888888876666777788888888888888776554 346778888888888888876666677888888888
Q ss_pred eccCCccccCCCCCCCCCCCCcCccCCCCCCCCCCC
Q 042632 542 NVSYNDLLGPVPNSRQFANFDENNYRGNPLLCGPPV 577 (659)
Q Consensus 542 ~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~~ 577 (659)
||.+|.+...-|..-.-..++++.+..-.++|+|.+
T Consensus 422 dL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred cCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 888888777656552222666666666667776643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-40 Score=325.44 Aligned_cols=344 Identities=23% Similarity=0.213 Sum_probs=224.9
Q ss_pred CEEECCCCCCcCCCChhhhcCCC--CCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccCcc
Q 042632 32 RVLNLSSNQLSGSLPISVFANLT--SLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSHNN 109 (659)
Q Consensus 32 ~~L~Ls~n~l~~~l~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~ 109 (659)
+.||.+++.+. .+....+.+.- .-+.||+++|++.. +.+..|.++++|+++++.+|.
T Consensus 55 ~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~--------------------id~~~f~nl~nLq~v~l~~N~ 113 (873)
T KOG4194|consen 55 RLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSH--------------------IDFEFFYNLPNLQEVNLNKNE 113 (873)
T ss_pred eeeecCccccc-cccccccCCcCccceeeeecccccccc--------------------CcHHHHhcCCcceeeeeccch
Confidence 45566666654 43322332221 23346666665542 245566666666666666666
Q ss_pred ccccCchHHhhcCCCCCEEEccCcccccccCCC-CCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCC
Q 042632 110 LAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLP-DSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIP 188 (659)
Q Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 188 (659)
++ .+|.... ...+|+.|+|.+|.|+.+.... ..++.|+.||++.|.++ .+|..-+..-.++++|+|++|.|+..-.
T Consensus 114 Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~ 190 (873)
T KOG4194|consen 114 LT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLET 190 (873)
T ss_pred hh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccccccccc
Confidence 66 6665332 3444666666666666542221 24556666666666665 4554443334678888888888887777
Q ss_pred hhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCC
Q 042632 189 PSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAP 268 (659)
Q Consensus 189 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 268 (659)
..|..+.+|..|.|++|.++ .+|...|..+++|+.|+|..|+|.....-.|.++++|+.|.+..|+|......+|..+.
T Consensus 191 ~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred ccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 78888888888999999988 88888888889999999999988766667788889999999999988877777888888
Q ss_pred CCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEcc
Q 042632 269 SLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLH 347 (659)
Q Consensus 269 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~ 347 (659)
++++|+|+.|++......++.+++.|+.|++++|.|..+.+++++.+++|++|++++|+++...+..+ .+..|++|+|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 89999999888887777888888888888888888887777777777777777777776664443333 44444444454
Q ss_pred CCcCCCCCchhhhcCCCCceEecCCCcccccCC---ccccCCCCCcEEEccCCcCC
Q 042632 348 NNSLNGNIPHLINEDSNLRALLLRGNNLQGNIP---EPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 348 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~ 400 (659)
+|.+...-...|..+.+|++|||++|.+...+. ..|..+++|+.|++.+|++.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 444443333344444444444444444433221 22334444444444444444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.9e-43 Score=330.49 Aligned_cols=464 Identities=26% Similarity=0.331 Sum_probs=381.1
Q ss_pred CCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEcc
Q 042632 27 NLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLS 106 (659)
Q Consensus 27 ~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls 106 (659)
.-..|+.|.+++|.+. .+. ..+.++..|.+|++++|++. ..|.+++.+..++.++.+
T Consensus 43 ~qv~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~---------------------~lp~aig~l~~l~~l~vs 99 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLS---------------------QLPAAIGELEALKSLNVS 99 (565)
T ss_pred hhcchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhh---------------------hCCHHHHHHHHHHHhhcc
Confidence 4468899999999997 666 78999999999999999987 478889999999999999
Q ss_pred CccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCccccc
Q 042632 107 HNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGS 186 (659)
Q Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 186 (659)
+|++. .+|..+. .+.+|+.+++++|.+...++....+..++.++..+|++. ..|.+++. +.++..+++.+|.++ .
T Consensus 100 ~n~ls-~lp~~i~-s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~-~ 174 (565)
T KOG0472|consen 100 HNKLS-ELPEQIG-SLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLK-A 174 (565)
T ss_pred cchHh-hccHHHh-hhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchh-h
Confidence 99999 9999987 889999999999999998877888999999999999988 77888875 889999999999999 5
Q ss_pred CChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcccccc-cc
Q 042632 187 IPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEG-LL 265 (659)
Q Consensus 187 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~ 265 (659)
.|+..-+++.|++||...|.+. .+|+++ +++.+|..|++.+|++.. .| .|.++..|++++++.|+|. .+|.. ..
T Consensus 175 l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~ 249 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLK 249 (565)
T ss_pred CCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhc
Confidence 6666666999999999999998 999997 899999999999999974 34 7999999999999999998 55554 45
Q ss_pred CCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC------CCC
Q 042632 266 NAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS------NHS 339 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~------~~~ 339 (659)
+++++..||+.+|+++ ..|+.+..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+...-.... -++
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 8999999999999999 88999999999999999999998 678889999 99999999998753211111 111
Q ss_pred CCcE----EEccCCc---CC-CCCc----hhhhcCCCCceEecCCCcccccCCccccCCC---CCcEEEccCCcCCcccc
Q 042632 340 SLRH----LFLHNNS---LN-GNIP----HLINEDSNLRALLLRGNNLQGNIPEPLCHLR---KLSIVDISCNNLNGSIP 404 (659)
Q Consensus 340 ~L~~----L~l~~n~---l~-~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~p 404 (659)
.|+. =.++... -+ ...+ .....+.+.+.|++++-+++ .+|+....-. -....+++.|++. .+|
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elP 404 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELP 404 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhh
Confidence 1111 0011110 00 0111 12234567899999999998 5565443333 3788999999997 677
Q ss_pred hhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhh
Q 042632 405 SCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEI 484 (659)
Q Consensus 405 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 484 (659)
..+..+. .-.+.+++++|.+. -+|..+
T Consensus 405 k~L~~lk----------------------------------------------------elvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 405 KRLVELK----------------------------------------------------ELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred hhhHHHH----------------------------------------------------HHHHHHHhhcCccc-cchHHH
Confidence 6554322 12445777888877 889999
Q ss_pred hccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCc
Q 042632 485 GLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDE 563 (659)
Q Consensus 485 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~ 563 (659)
..+++|..|+|++|.+. .+|..++.+..|+.||+++|++. .+|+....+..++.+-.++|++....|.+ ..+..+..
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 99999999999999998 88999999999999999999998 89999999999999999999998877774 67788899
Q ss_pred CccCCCCCCCCCCCCCCCCC
Q 042632 564 NNYRGNPLLCGPPVLKNCSS 583 (659)
Q Consensus 564 ~~~~~N~~~c~~~~~~~C~~ 583 (659)
+++..|...--||....|..
T Consensus 510 LDL~nNdlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPILGNMTN 529 (565)
T ss_pred eccCCCchhhCChhhccccc
Confidence 99999998888887777765
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-38 Score=324.95 Aligned_cols=438 Identities=29% Similarity=0.342 Sum_probs=277.8
Q ss_pred CCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccc
Q 042632 7 LVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNI 86 (659)
Q Consensus 7 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l 86 (659)
|+.||+++|.+. ..|..+..+.+|+.|+++.|.|. .+| ....++.+|++++|.+|.+.
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~lnL~~n~l~------------------- 104 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLNLKNNRLQ------------------- 104 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhheeccchhh-------------------
Confidence 555555555554 45555555555555555555555 555 45555555555555555544
Q ss_pred cccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhh
Q 042632 87 SGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNF 166 (659)
Q Consensus 87 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 166 (659)
..|..+..+.+|++||++.|.+. .+|..+. .+..++.+..++|.-... . .-..++.+++..|.+.+.++.++
T Consensus 105 --~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~--l--g~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 105 --SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQR--L--GQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred --cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhh--h--ccccchhhhhhhhhcccchhcch
Confidence 35666666666777777777666 6666554 566666666666611111 0 11126666666666666666555
Q ss_pred hhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCC
Q 042632 167 GVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQL 246 (659)
Q Consensus 167 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 246 (659)
.. +.. .|+|.+|.+. .-.+..+.+|+.+....|++. .+. ..-++|+.|+.++|.+....+. .--.+|
T Consensus 177 ~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl 243 (1081)
T KOG0618|consen 177 YN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNL 243 (1081)
T ss_pred hh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccc
Confidence 42 333 4777777665 224556666777777777665 332 1336677777777776632221 122467
Q ss_pred CEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCC
Q 042632 247 AWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGN 326 (659)
Q Consensus 247 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 326 (659)
++++++.|+++ .+|+++..+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. .+|....+.++|++|++..|
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 77777777777 44577777777777777777775 66666666777777777777776 45555666777777777777
Q ss_pred cCcCcCCCCC--CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccc
Q 042632 327 KLYGPLEFSS--NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIP 404 (659)
Q Consensus 327 ~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 404 (659)
.+....+.+. ...+++.|+.+.|++.......=..++.|+.|++.+|.+++..-..+.+..+|++|+|++|++. .+|
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fp 399 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFP 399 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCC
Confidence 7765444333 2223666666666665222111123566888888888887766667778888888888888887 455
Q ss_pred hh-hccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChh
Q 042632 405 SC-FTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSE 483 (659)
Q Consensus 405 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 483 (659)
+. +.+ +..|++|+||+|+++ .+|+.
T Consensus 400 as~~~k-----------------------------------------------------le~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 400 ASKLRK-----------------------------------------------------LEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred HHHHhc-----------------------------------------------------hHHhHHHhcccchhh-hhhHH
Confidence 43 333 567888888888888 77788
Q ss_pred hhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCc
Q 042632 484 IGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYND 547 (659)
Q Consensus 484 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 547 (659)
+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++...-..-..-++|++||+++|.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 888888888888888887 666 77888888888888888874432222222788888888886
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-37 Score=321.51 Aligned_cols=466 Identities=27% Similarity=0.311 Sum_probs=385.6
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcccc
Q 042632 6 NLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCN 85 (659)
Q Consensus 6 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~ 85 (659)
.++.|+++.|-+-...-+...+.-+|+.||+++|++. ..| ..+..+.+|+.|+++.|.+.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~------------------ 81 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIR------------------ 81 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHh------------------
Confidence 3678889888776433445667777999999999998 889 88999999999999999987
Q ss_pred ccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChh
Q 042632 86 ISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDN 165 (659)
Q Consensus 86 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 165 (659)
..|....++.+|+++.|.+|.+. ..|..+. .+.+|++|+++.|.+...+.....+..+..+..++|..+...+.
T Consensus 82 ---~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~- 155 (1081)
T KOG0618|consen 82 ---SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ- 155 (1081)
T ss_pred ---hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-
Confidence 36678889999999999999998 9998876 89999999999999998887777888899999999943322222
Q ss_pred hhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCC
Q 042632 166 FGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQ 245 (659)
Q Consensus 166 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 245 (659)
..++.+++..|.+.+.++..+..+++ .|+|++|.+. .+. ...+..|+.+....|++..... .-++
T Consensus 156 -----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~ 220 (1081)
T KOG0618|consen 156 -----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPS 220 (1081)
T ss_pred -----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcc
Confidence 23788899999888888888888877 8999999986 333 4678999999999999875432 3478
Q ss_pred CCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccC
Q 042632 246 LAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISG 325 (659)
Q Consensus 246 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 325 (659)
|+.|+.++|.++...+. ....+|+++++++|+++ .+|+|+..+.+|+.++..+|.+. ..|..+....+|+.|++..
T Consensus 221 l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred hheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence 99999999999843322 23568999999999999 66799999999999999999996 7788888899999999999
Q ss_pred CcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCC-CceEecCCCcccccCCc-cccCCCCCcEEEccCCcCCccc
Q 042632 326 NKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSN-LRALLLRGNNLQGNIPE-PLCHLRKLSIVDISCNNLNGSI 403 (659)
Q Consensus 326 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~ 403 (659)
|.+.-..+.....++|++|++..|++....+..+..... |..|+.+.|++. ..|. .=...+.|+.|.+.+|.++...
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccc
Confidence 999988887778999999999999998443334444443 788899999987 3442 2234667999999999998655
Q ss_pred chhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChh
Q 042632 404 PSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSE 483 (659)
Q Consensus 404 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 483 (659)
-+.+.+ +.+|+.|+|++|++.......
T Consensus 376 ~p~l~~-----------------------------------------------------~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 376 FPVLVN-----------------------------------------------------FKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred hhhhcc-----------------------------------------------------ccceeeeeecccccccCCHHH
Confidence 444433 678999999999999555566
Q ss_pred hhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccC-CCCCCCCCCCC
Q 042632 484 IGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGP-VPNSRQFANFD 562 (659)
Q Consensus 484 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~-~p~~~~~~~l~ 562 (659)
+.++..|++|+||+|+++ .+|.++..+..|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.....+.++
T Consensus 403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK 479 (1081)
T ss_pred HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence 889999999999999999 88899999999999999999998 788 789999999999999999874 34444448899
Q ss_pred cCccCCCCCCC
Q 042632 563 ENNYRGNPLLC 573 (659)
Q Consensus 563 ~~~~~~N~~~c 573 (659)
.++++||+++-
T Consensus 480 yLdlSGN~~l~ 490 (1081)
T KOG0618|consen 480 YLDLSGNTRLV 490 (1081)
T ss_pred eeeccCCcccc
Confidence 99999999753
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=4.6e-36 Score=298.73 Aligned_cols=365 Identities=27% Similarity=0.341 Sum_probs=323.4
Q ss_pred CCCCCEEeCCCCcCc-ccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCc
Q 042632 4 LKNLVELNLSGNKFD-GSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLE 82 (659)
Q Consensus 4 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (659)
++-++-.|+++|.+. +..|.+...+++++.|.|...++. .+| +.++.+.+|++|.+++|++..
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~-------------- 69 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLIS-------------- 69 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHh--------------
Confidence 667888999999998 578999999999999999999998 999 899999999999999999873
Q ss_pred cccccccchhhhhCCCCCCEEEccCccccc-cCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCccc
Q 042632 83 HCNISGTIASFLQYQYDLRYIDLSHNNLAG-TIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGT 161 (659)
Q Consensus 83 ~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 161 (659)
+...+..++.|+.+++..|++.. -+|..+| ++..|..|+|++|+++..+......+++-.|++|+|+|. .
T Consensus 70 -------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-t 140 (1255)
T KOG0444|consen 70 -------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-T 140 (1255)
T ss_pred -------hhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-c
Confidence 34567788899999999999873 4888888 899999999999999988777778889999999999987 8
Q ss_pred CChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcccc-ccCCcCC
Q 042632 162 LPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFV-GQIFPKY 240 (659)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~ 240 (659)
||..++.+++.|-.|||++|++. .+|..+..+..|++|+|++|.+. ...-.-+..+++|++|.+++.+-+ ..+|.++
T Consensus 141 IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 141 IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 99998888999999999999998 78999999999999999999986 433222346678888888887543 3577888
Q ss_pred CCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcE
Q 042632 241 MNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRI 320 (659)
Q Consensus 241 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 320 (659)
..+.+|..++++.|.+. ..|+++..+++|+.|+|++|+++ .+....+...+|++|+++.|+++ ..|.+++.++.|+.
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 99999999999999999 88999999999999999999999 55666777889999999999998 78999999999999
Q ss_pred EEccCCcCc--CcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCc
Q 042632 321 LDISGNKLY--GPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNN 398 (659)
Q Consensus 321 L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 398 (659)
|.+.+|+++ |.+.....+..|+.+..++|.+. ..|+.++.|+.|+.|.|+.|++. .+|+++.-++.|+.||+..|.
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 999999875 45555568999999999999997 89999999999999999999998 789999999999999999996
Q ss_pred CC
Q 042632 399 LN 400 (659)
Q Consensus 399 l~ 400 (659)
--
T Consensus 374 nL 375 (1255)
T KOG0444|consen 374 NL 375 (1255)
T ss_pred Cc
Confidence 44
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-35 Score=296.16 Aligned_cols=366 Identities=27% Similarity=0.387 Sum_probs=248.3
Q ss_pred CCCCEEECCCCCCc-CCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccC
Q 042632 29 TYLRVLNLSSNQLS-GSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSH 107 (659)
Q Consensus 29 ~~L~~L~Ls~n~l~-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~ 107 (659)
+-.+-.|+++|.++ +..| ..+..|++++.|.|...++. .+|+.++.+.+|++|.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~---------------------~vPeEL~~lqkLEHLs~~H 64 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLE---------------------QVPEELSRLQKLEHLSMAH 64 (1255)
T ss_pred ceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhh---------------------hChHHHHHHhhhhhhhhhh
Confidence 34455666666666 3455 56666666666666655544 2555666666666666666
Q ss_pred ccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccC
Q 042632 108 NNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSI 187 (659)
Q Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 187 (659)
|++. .+-..+. .++.|+.+.+..|++.. .-+|..++. +..|+.|||++|++. +.
T Consensus 65 N~L~-~vhGELs-~Lp~LRsv~~R~N~LKn----------------------sGiP~diF~-l~dLt~lDLShNqL~-Ev 118 (1255)
T KOG0444|consen 65 NQLI-SVHGELS-DLPRLRSVIVRDNNLKN----------------------SGIPTDIFR-LKDLTILDLSHNQLR-EV 118 (1255)
T ss_pred hhhH-hhhhhhc-cchhhHHHhhhcccccc----------------------CCCCchhcc-cccceeeecchhhhh-hc
Confidence 6555 3333322 45555555555554442 257888886 999999999999998 88
Q ss_pred ChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCC
Q 042632 188 PPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNA 267 (659)
Q Consensus 188 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 267 (659)
|..+...+++-.|+|++|+|. +||..+|.++..|-.|||++|++. ..|+....+..|++|.|++|.+....-..+..+
T Consensus 119 P~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm 196 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM 196 (1255)
T ss_pred chhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence 999999999999999999998 999999999999999999999987 456667888889999999998775444455566
Q ss_pred CCCcEEEeeccccc-CCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEc
Q 042632 268 PSLYILDVSNNMLS-GQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFL 346 (659)
Q Consensus 268 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 346 (659)
++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+.+-.+.+|+.|++|+|+++..
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL--------------- 260 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL--------------- 260 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee---------------
Confidence 77777777766544 345666666666666666666665 5566655555555555555555432
Q ss_pred cCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCc-ccchhhccccccccccCCCCCcee
Q 042632 347 HNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNG-SIPSCFTNISLWMEESDSFNGFVI 425 (659)
Q Consensus 347 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~ 425 (659)
....+...+|++|+++.|+++ .+|++++.+++|+.|.+.+|+++- -+|+.++.
T Consensus 261 ---------~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK---------------- 314 (1255)
T KOG0444|consen 261 ---------NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK---------------- 314 (1255)
T ss_pred ---------eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh----------------
Confidence 222333445666666666666 566666666666666666666541 23444433
Q ss_pred eccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCC
Q 042632 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505 (659)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 505 (659)
+..|+.+..++|.+. .+|+.+..+..|+.|.|++|++. ..|
T Consensus 315 -------------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP 355 (1255)
T KOG0444|consen 315 -------------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP 355 (1255)
T ss_pred -------------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence 445666666667666 77777777777777777777776 677
Q ss_pred ccccccCCCCEEECcCCccc
Q 042632 506 RSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 506 ~~~~~l~~L~~L~Ls~N~l~ 525 (659)
+++.-++.|+.||+..|+-.
T Consensus 356 eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhcCCcceeeccCCcCc
Confidence 77777777777777777654
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-27 Score=226.14 Aligned_cols=252 Identities=21% Similarity=0.220 Sum_probs=185.2
Q ss_pred CccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcC-CcCccccChhhhhCCCCCCEE
Q 042632 147 DLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSS-NNFSGELPKQFLTGCVSLEFM 225 (659)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 225 (659)
.-..++|..|+|+ .+|+..|..+++|+.|||++|+|+.+.|.+|..++.+.+|-+.+ |+|+ .+|+..|.++..++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4556667777766 66777767788888888888888888888888888888776666 8887 8888888888888888
Q ss_pred EccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeeccccc------------CCCChhhhCCCC
Q 042632 226 NLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLS------------GQLPHWAGNFSN 293 (659)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~l~~l~~ 293 (659)
.+.-|++.....++|..++++..|.+.+|.+..+....|..+.+++++.+..|.+- ...|..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 88888888777788888888888888888888555557888888888888877632 112222222211
Q ss_pred CCEEEc-------------------------cCCcccccCC-ccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEc
Q 042632 294 LDVLLM-------------------------SRNSLEGDVS-VPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFL 346 (659)
Q Consensus 294 L~~L~l-------------------------~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l 346 (659)
..-..+ +.+......| ..|..+++|++|++++|+++...+..+ ....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111111 1121222223 347778888888888888887666655 7788888888
Q ss_pred cCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCC
Q 042632 347 HNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 347 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
..|++...-...|.++..|++|+|++|+|+...|.+|..+.+|.+|.+-.|.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888887665667888888888888888888788888888888888888888764
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.2e-23 Score=245.60 Aligned_cols=341 Identities=21% Similarity=0.206 Sum_probs=244.7
Q ss_pred CchHHhhcCCCCCEEEccCccccc-------ccCCCC-CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccc
Q 042632 114 IPTWLLQNNTKLEILFLFNNFLTG-------RLHLPD-SKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVG 185 (659)
Q Consensus 114 ~~~~~~~~l~~L~~L~L~~n~i~~-------~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 185 (659)
+....|.++++|+.|.+..+.... .+.... ..++|+.|.+.++.+. .+|..+. +.+|++|++++|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence 455567788999999887664321 111111 2346888888888765 7777763 678999999998887
Q ss_pred cCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcccccccc
Q 042632 186 SIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLL 265 (659)
Q Consensus 186 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 265 (659)
.++..+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 5777788889999999988764447775 4678899999999887767778888888999999998875444666554
Q ss_pred CCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCc-------CCC-CCC
Q 042632 266 NAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGP-------LEF-SSN 337 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------~~~-~~~ 337 (659)
.+++|+.|++++|......|.. .++|++|++++|.+. .+|..+ .+++|+.|++.++..... .+. ...
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 6888999999888665455542 357888889888876 445443 567788887776442211 111 113
Q ss_pred CCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcccccccccc
Q 042632 338 HSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEES 417 (659)
Q Consensus 338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~ 417 (659)
+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------- 844 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------- 844 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------
Confidence 5678888888887666778888888888888888875544666655 6788888888887543333321
Q ss_pred CCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCC
Q 042632 418 DSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSH 497 (659)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 497 (659)
.++|+.|+|++|.++ .+|..+..+++|+.|+|++
T Consensus 845 ---------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 845 ---------------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred ---------------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 346788888888888 6788888888888888888
Q ss_pred CcCcccCCccccccCCCCEEECcCCcc
Q 042632 498 NHFSGSIPRSFSILKMIESMDLSYNEL 524 (659)
Q Consensus 498 N~l~~~~p~~~~~l~~L~~L~Ls~N~l 524 (659)
|+-...+|..+..++.|+.+++++|.-
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCcc
Confidence 543336777788888888888888853
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.4e-23 Score=245.02 Aligned_cols=341 Identities=19% Similarity=0.157 Sum_probs=265.0
Q ss_pred chhhhhCCCCCCEEEccCccc------cccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCC
Q 042632 90 IASFLQYQYDLRYIDLSHNNL------AGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLP 163 (659)
Q Consensus 90 ~~~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 163 (659)
.+.+|.++++|+.|.+..+.. ...+|..+..-..+|+.|++.++.+...+.. ....+|++|+++++++. .++
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-FRPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-CCccCCcEEECcCcccc-ccc
Confidence 456789999999999976642 2346666553345799999999998877543 35789999999999987 677
Q ss_pred hhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCC
Q 042632 164 DNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNL 243 (659)
Q Consensus 164 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 243 (659)
..+. .+++|+.|+|+++.....+| .+..+++|++|++++|.....+|..+ ..+++|+.|++++|.....+|..+ ++
T Consensus 628 ~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 628 DGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 7665 48999999999886554666 48889999999999987666888875 789999999999987665666554 78
Q ss_pred CCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccc-------cCCccCCCCC
Q 042632 244 TQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEG-------DVSVPLSNLQ 316 (659)
Q Consensus 244 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~ 316 (659)
++|++|++++|......|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++.... ..+......+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 99999999999765555543 468999999999987 566655 57889999888754221 1122233457
Q ss_pred CCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEcc
Q 042632 317 VTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDIS 395 (659)
Q Consensus 317 ~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (659)
+|+.|++++|...+..|... .+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 89999999998766555544 89999999999986555777665 6899999999998765555543 3689999999
Q ss_pred CCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCc
Q 042632 396 CNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNE 475 (659)
Q Consensus 396 ~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 475 (659)
+|.++ .+|.++.. +++|+.|++++|+
T Consensus 855 ~n~i~-~iP~si~~-----------------------------------------------------l~~L~~L~L~~C~ 880 (1153)
T PLN03210 855 RTGIE-EVPWWIEK-----------------------------------------------------FSNLSFLDMNGCN 880 (1153)
T ss_pred CCCCc-cChHHHhc-----------------------------------------------------CCCCCEEECCCCC
Confidence 99997 67776654 6789999999965
Q ss_pred CcccCChhhhccccCCEEeCCCCc
Q 042632 476 LTGDIPSEIGLLQELHALNLSHNH 499 (659)
Q Consensus 476 l~~~~p~~l~~l~~L~~L~Ls~N~ 499 (659)
--..+|..+..+++|+.+++++|.
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCc
Confidence 444678788999999999999986
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-26 Score=219.63 Aligned_cols=416 Identities=22% Similarity=0.194 Sum_probs=209.2
Q ss_pred CCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchh
Q 042632 13 SGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIAS 92 (659)
Q Consensus 13 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~ 92 (659)
++-.++ .+|..+.. .-..++|..|+|+ .||.++|+.+++|+.||||+|.|+.+ .|.
T Consensus 54 r~~GL~-eVP~~LP~--~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I--------------------~p~ 109 (498)
T KOG4237|consen 54 RGKGLT-EVPANLPP--ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFI--------------------APD 109 (498)
T ss_pred cCCCcc-cCcccCCC--cceEEEeccCCcc-cCChhhccchhhhceecccccchhhc--------------------ChH
Confidence 333444 45554442 5667777788887 77777888888888888887776632 445
Q ss_pred hhhCCCCCCEEEccC-ccccccCchHHhhcCCCCCEEEccCcccccccCCC-CCCCCccEEEcccCcCcccCChhhhhcC
Q 042632 93 FLQYQYDLRYIDLSH-NNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLP-DSKRDLLHLVISNNNFIGTLPDNFGVIL 170 (659)
Q Consensus 93 ~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~l 170 (659)
+|..++.|.+|-+.+ |+|+ .+|...|+++.+|+.|.+.-|++.-..... ..++++..|.+..|.+. .++...+..+
T Consensus 110 AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l 187 (498)
T KOG4237|consen 110 AFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGL 187 (498)
T ss_pred hhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccch
Confidence 555555554444444 5555 555555555555555555555554332111 13444444444444443 3333333334
Q ss_pred CCCcEEEcccCccc------------ccCChhhcCCCCCCEEeCcCCcCccccChhhhhC-CCCCCEEEccCccccccCC
Q 042632 171 PELVYLDMSQNSFV------------GSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTG-CVSLEFMNLSHNLFVGQIF 237 (659)
Q Consensus 171 ~~L~~L~L~~n~i~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~i~~~~~ 237 (659)
..++.+.+..|.+. ...|..++..+...-..+.+.++. .++..-|.. +.++..--.+.+.....-|
T Consensus 188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP 266 (498)
T KOG4237|consen 188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICP 266 (498)
T ss_pred hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence 45555555544411 111222222222222333333332 222211111 1111111111221111111
Q ss_pred -cCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCC
Q 042632 238 -PKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQ 316 (659)
Q Consensus 238 -~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 316 (659)
..|..+++|+.|++++|+++.+-+.+|.+...++.|.|..|++...-...|.++..|++|++.+|+|+...|.+|..+.
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 2255566666666666666655566666666666666666666544455566666666666666666666666666666
Q ss_pred CCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccc---cCCccc---------c
Q 042632 317 VTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQG---NIPEPL---------C 384 (659)
Q Consensus 317 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~---------~ 384 (659)
.|.+|.+-.|.+........-... +......+..| -+....++.+.+++..+.. ..|+.. .
T Consensus 347 ~l~~l~l~~Np~~CnC~l~wl~~W-----lr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~ 419 (498)
T KOG4237|consen 347 SLSTLNLLSNPFNCNCRLAWLGEW-----LRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPP 419 (498)
T ss_pred eeeeeehccCcccCccchHHHHHH-----HhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCC
Confidence 666666655554321110000000 00111111100 0111123333333333211 111111 1
Q ss_pred CCCCCcEE-EccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccc
Q 042632 385 HLRKLSIV-DISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVL 463 (659)
Q Consensus 385 ~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 463 (659)
.++-+.+. .-|+..+. .+| .+++
T Consensus 420 ~c~c~~tVvRcSnk~lk-~lp-------------------------------------------------------~~iP 443 (498)
T KOG4237|consen 420 PCTCLDTVVRCSNKLLK-LLP-------------------------------------------------------RGIP 443 (498)
T ss_pred CcchhhhhHhhcccchh-hcC-------------------------------------------------------CCCC
Confidence 12222222 12222222 222 2335
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCC
Q 042632 464 NYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYN 522 (659)
Q Consensus 464 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 522 (659)
..-++|++.+|.++ .+|.. .+.+| .+++++|+++......|.++++|.+|-|++|
T Consensus 444 ~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 56788999999999 77776 67788 8999999999777889999999999999986
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=3.7e-22 Score=216.07 Aligned_cols=80 Identities=29% Similarity=0.313 Sum_probs=41.0
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEecc
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVS 544 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 544 (659)
+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|+.+.++++|+.|+++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 3455555555555 23322 234555555555555 24432 234455555555555 455555555555555555
Q ss_pred CCccccCCC
Q 042632 545 YNDLLGPVP 553 (659)
Q Consensus 545 ~N~l~~~~p 553 (659)
+|++++.+|
T Consensus 454 ~N~Ls~~~~ 462 (788)
T PRK15387 454 GNPLSERTL 462 (788)
T ss_pred CCCCCchHH
Confidence 555555433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=4.6e-22 Score=215.35 Aligned_cols=268 Identities=25% Similarity=0.258 Sum_probs=208.5
Q ss_pred CCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEE
Q 042632 171 PELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLY 250 (659)
Q Consensus 171 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 250 (659)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++.. |.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceee
Confidence 34678999999998 6787665 47999999999998 7875 358899999999998854 332 46889999
Q ss_pred ccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcC
Q 042632 251 LSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYG 330 (659)
Q Consensus 251 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 330 (659)
+++|.+.. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. ...|+.|++++|.+++
T Consensus 269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 99998883 4442 367889999999998 45542 4689999999999885 3432 2467888999999876
Q ss_pred cCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccc
Q 042632 331 PLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNI 410 (659)
Q Consensus 331 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 410 (659)
... ...+|+.|++++|+++. +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..
T Consensus 337 LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---- 400 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---- 400 (788)
T ss_pred ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc----
Confidence 432 23579999999999984 5543 357888999999998 45643 357899999999987 34432
Q ss_pred cccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccC
Q 042632 411 SLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQEL 490 (659)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 490 (659)
+++|+.|++++|+++ .+|.. ..+|
T Consensus 401 ----------------------------------------------------~s~L~~LdLS~N~Ls-sIP~l---~~~L 424 (788)
T PRK15387 401 ----------------------------------------------------PSELKELMVSGNRLT-SLPML---PSGL 424 (788)
T ss_pred ----------------------------------------------------ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence 346889999999999 46754 3468
Q ss_pred CEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcC
Q 042632 491 HALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSEL 535 (659)
Q Consensus 491 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 535 (659)
+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 89999999999 789999999999999999999999888877544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4.7e-20 Score=201.33 Aligned_cols=245 Identities=23% Similarity=0.332 Sum_probs=125.0
Q ss_pred CCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEee
Q 042632 197 LLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVS 276 (659)
Q Consensus 197 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 276 (659)
...|+++++.++ .+|..+. +.|+.|++++|+++.. |..+. ++|++|++++|+++ .+|..+ .++|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhh--hccccEEECc
Confidence 445555555555 4554331 3455555555555532 22221 35555555555555 233332 2345666666
Q ss_pred cccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCc
Q 042632 277 NNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIP 356 (659)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 356 (659)
+|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++.... ..++|+.|++++|.++. +|
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~--lp~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAH--LPSGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCccc--chhhHHHHHhcCCcccc-CC
Confidence 66655 4444433 35666666666655 2343332 3556666666655532211 12345666666666652 33
Q ss_pred hhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCC
Q 042632 357 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGR 436 (659)
Q Consensus 357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (659)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l----------------------------- 365 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL----------------------------- 365 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-----------------------------
Confidence 322 2456666666666653 444332 46666666666665 333321
Q ss_pred cccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccc----cccC
Q 042632 437 RLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSF----SILK 512 (659)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~ 512 (659)
.+.|+.|+|++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ..++
T Consensus 366 --------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~ 415 (754)
T PRK15370 366 --------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGP 415 (754)
T ss_pred --------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCC
Confidence 234666666666666 3444443 24666666666665 344333 2235
Q ss_pred CCCEEECcCCccc
Q 042632 513 MIESMDLSYNELS 525 (659)
Q Consensus 513 ~L~~L~Ls~N~l~ 525 (659)
.+..|++.+|+++
T Consensus 416 ~l~~L~L~~Npls 428 (754)
T PRK15370 416 QPTRIIVEYNPFS 428 (754)
T ss_pred CccEEEeeCCCcc
Confidence 5666666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=5.5e-20 Score=200.77 Aligned_cols=246 Identities=23% Similarity=0.289 Sum_probs=157.7
Q ss_pred CCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEc
Q 042632 172 ELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYL 251 (659)
Q Consensus 172 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 251 (659)
+.+.|+++++.++ .+|..+ .++++.|++++|+++ .+|..++ ++|++|++++|+++. +|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 4566677666666 455443 245667777777776 6666543 467777777776653 333332 35677777
Q ss_pred cCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCc
Q 042632 252 SDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGP 331 (659)
Q Consensus 252 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 331 (659)
++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++..
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC
Confidence 777766 3444442 46777777777776 4555443 467777777777763 333332 3677777777777653
Q ss_pred CCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcccc
Q 042632 332 LEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNIS 411 (659)
Q Consensus 332 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 411 (659)
... ..++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++ .+|..+
T Consensus 320 P~~--l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l---- 386 (754)
T PRK15370 320 PET--LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENL---- 386 (754)
T ss_pred Ccc--ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhH----
Confidence 322 23578888888888774 555443 67888888888887 456554 357888888888887 445433
Q ss_pred ccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhh----cc
Q 042632 412 LWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIG----LL 487 (659)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l 487 (659)
...|+.|++++|+++ .+|..+. .+
T Consensus 387 ---------------------------------------------------~~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 387 ---------------------------------------------------PAALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred ---------------------------------------------------HHHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 235777888888887 5555443 34
Q ss_pred ccCCEEeCCCCcCc
Q 042632 488 QELHALNLSHNHFS 501 (659)
Q Consensus 488 ~~L~~L~Ls~N~l~ 501 (659)
+.+..|++.+|+++
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 77788888888886
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=8.5e-20 Score=185.91 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=42.5
Q ss_pred cccccEEEccCCcCcccCChhhhc-----cccCCEEeCCCCcCcc----cCCccccccCCCCEEECcCCccccc----CC
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGL-----LQELHALNLSHNHFSG----SIPRSFSILKMIESMDLSYNELSGR----IP 529 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p 529 (659)
+++|+.|++++|.+++.....+.. .+.|++|++++|.++. .+...+..+++|+.+++++|.++.. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 345666666666655422222221 2456666666666541 1223344445666666666666533 22
Q ss_pred hhhhcC-CCCCeEeccCCc
Q 042632 530 LELSEL-NYLAIFNVSYND 547 (659)
Q Consensus 530 ~~l~~l-~~L~~L~l~~N~ 547 (659)
..+... +.|+.+++.+|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 233333 456666666554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=3.1e-20 Score=156.72 Aligned_cols=178 Identities=28% Similarity=0.432 Sum_probs=123.7
Q ss_pred CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccc
Q 042632 337 NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEE 416 (659)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 416 (659)
.++.++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs------- 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS------- 100 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-------
Confidence 4556666677777776 55666777777777777777776 56666777777777777777775 66666655
Q ss_pred cCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcc-cCChhhhccccCCEEeC
Q 042632 417 SDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTG-DIPSEIGLLQELHALNL 495 (659)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L 495 (659)
++.|+.|||++|++.. ..|..|-.++.|+.|+|
T Consensus 101 ----------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 101 ----------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred ----------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 5567777777777764 56777777777777777
Q ss_pred CCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCC---CcCccCCCCCC
Q 042632 496 SHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANF---DENNYRGNPLL 572 (659)
Q Consensus 496 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l---~~~~~~~N~~~ 572 (659)
+.|.+. .+|..++++++|+.|.+..|.+. .+|.++..++.|+.|.+.+|+++-.+|..+++.-. ...-...|||.
T Consensus 135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 777776 67777777777877877777777 77777777777888888888777776665443322 12234556664
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2.8e-19 Score=182.11 Aligned_cols=279 Identities=22% Similarity=0.216 Sum_probs=164.6
Q ss_pred EEccCccccc-cCCcCCCCCCCCCEEEccCCCCCcc----ccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEc
Q 042632 225 MNLSHNLFVG-QIFPKYMNLTQLAWLYLSDNQFTGR----LEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLM 299 (659)
Q Consensus 225 L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 299 (659)
|+|..+.+++ .....+..+.+|++|+++++.++.. ++..+...+++++++++++.+.+ .+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH-----------
Confidence 4555555542 2222234455566666666665432 23334445556666665555431 00000
Q ss_pred cCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CC---CCCcEEEccCCcCCC----CCchhhhcC-CCCceEec
Q 042632 300 SRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NH---SSLRHLFLHNNSLNG----NIPHLINED-SNLRALLL 370 (659)
Q Consensus 300 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~---~~L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~L 370 (659)
...+..+..+++|+.|++++|.+.+..+... .+ ++|++|++++|++++ .+...+..+ ++|++|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 0111223334455555555554432111111 11 447777777777653 222344556 78889999
Q ss_pred CCCccccc----CCccccCCCCCcEEEccCCcCCcccchhhc-cccccccccCCCCCceeeccccccccCCccccccccc
Q 042632 371 RGNNLQGN----IPEPLCHLRKLSIVDISCNNLNGSIPSCFT-NISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTS 445 (659)
Q Consensus 371 ~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (659)
++|.+++. ++..+..+++|++|++++|.+++.....+. .+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l----------------------------------- 189 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL----------------------------------- 189 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH-----------------------------------
Confidence 98888732 334566778899999999988742211111 00
Q ss_pred ceEeeeccccccccccccccccEEEccCCcCcccC----ChhhhccccCCEEeCCCCcCcccCCccccc-----cCCCCE
Q 042632 446 RNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDI----PSEIGLLQELHALNLSHNHFSGSIPRSFSI-----LKMIES 516 (659)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~ 516 (659)
...++|+.|++++|.+++.. +..+..+++|++|++++|.+++.....+.. .+.|++
T Consensus 190 ---------------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 190 ---------------KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred ---------------HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 01458999999999987543 344667889999999999998643333322 479999
Q ss_pred EECcCCccc----ccCChhhhcCCCCCeEeccCCccccC----CCCC-CCC-CCCCcCccCCCCC
Q 042632 517 MDLSYNELS----GRIPLELSELNYLAIFNVSYNDLLGP----VPNS-RQF-ANFDENNYRGNPL 571 (659)
Q Consensus 517 L~Ls~N~l~----~~~p~~l~~l~~L~~L~l~~N~l~~~----~p~~-~~~-~~l~~~~~~~N~~ 571 (659)
|++++|.++ ..+.+.+..+++|+++++++|.++.. .... ..+ ..+.++++.+|||
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999997 23445667778999999999999864 2211 223 4566777777775
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=6.2e-19 Score=148.92 Aligned_cols=184 Identities=27% Similarity=0.427 Sum_probs=157.1
Q ss_pred CCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcE
Q 042632 312 LSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSI 391 (659)
Q Consensus 312 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 391 (659)
+..+++++.|.+++|+++...|....+.+|+.|++.+|++. ..|..++.+++|+.|++.-|++. ..|..|+.++.|++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34566777888888888887777778889999999999998 78889999999999999999998 89999999999999
Q ss_pred EEccCCcCCc-ccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEE
Q 042632 392 VDISCNNLNG-SIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLD 470 (659)
Q Consensus 392 L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 470 (659)
||+++|++.. .+|..|.. ++.|+.|+
T Consensus 107 ldltynnl~e~~lpgnff~-----------------------------------------------------m~tlraly 133 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRALY 133 (264)
T ss_pred hhccccccccccCCcchhH-----------------------------------------------------HHHHHHHH
Confidence 9999999874 34555543 56788899
Q ss_pred ccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCC---CCeEeccCCc
Q 042632 471 LSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNY---LAIFNVSYND 547 (659)
Q Consensus 471 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~l~~N~ 547 (659)
|+.|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|++.+|+++ .+|.+++++.- =+...+.+|+
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence 9999999 88999999999999999999998 88999999999999999999999 77877777643 3556777888
Q ss_pred cccCCC
Q 042632 548 LLGPVP 553 (659)
Q Consensus 548 l~~~~p 553 (659)
...+|.
T Consensus 211 wv~pIa 216 (264)
T KOG0617|consen 211 WVNPIA 216 (264)
T ss_pred CCChHH
Confidence 776554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=2.6e-15 Score=164.03 Aligned_cols=118 Identities=38% Similarity=0.672 Sum_probs=107.6
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEecc
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVS 544 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 544 (659)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCC--CCCCCCCcCccCCCCCCCCCCCCCCCC
Q 042632 545 YNDLLGPVPNS--RQFANFDENNYRGNPLLCGPPVLKNCS 582 (659)
Q Consensus 545 ~N~l~~~~p~~--~~~~~l~~~~~~~N~~~c~~~~~~~C~ 582 (659)
+|+++|.+|.. .....+..+++.+|+++|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999975 223345677899999999987666774
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=5.4e-14 Score=140.92 Aligned_cols=172 Identities=31% Similarity=0.519 Sum_probs=101.6
Q ss_pred cEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCc
Q 042632 319 RILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNN 398 (659)
Q Consensus 319 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 398 (659)
...|++.|++.........+..|+.+.+..|.+. .+|..+..+..|+.++++.|++. .+|..++.++ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3445555555544444444445555555555554 55666666666666666666665 5555565554 6666666666
Q ss_pred CCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcc
Q 042632 399 LNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTG 478 (659)
Q Consensus 399 l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 478 (659)
++ .+|..++. ...|..||.+.|.+.
T Consensus 155 l~-~lp~~ig~-----------------------------------------------------~~tl~~ld~s~nei~- 179 (722)
T KOG0532|consen 155 LT-SLPEEIGL-----------------------------------------------------LPTLAHLDVSKNEIQ- 179 (722)
T ss_pred cc-cCCccccc-----------------------------------------------------chhHHHhhhhhhhhh-
Confidence 65 45544431 345666666666666
Q ss_pred cCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccC
Q 042632 479 DIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGP 551 (659)
Q Consensus 479 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 551 (659)
.+|..++.+.+|+.|++..|++. ..|+.+..|+ |..||+|.|+++ .+|-.|.+|+.|++|-|.+|++..+
T Consensus 180 slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 55556666666666666666666 4455555443 556666666666 6666666666666666666666653
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=135.78 Aligned_cols=114 Identities=33% Similarity=0.530 Sum_probs=103.7
Q ss_pred CCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccccccc
Q 042632 388 KLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMT 467 (659)
Q Consensus 388 ~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 467 (659)
.++.|+|++|.+.|.+|..+.. +++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-----------------------------------------------------L~~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-----------------------------------------------------LRHLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-----------------------------------------------------CCCCC
Confidence 3788999999999999988776 67899
Q ss_pred EEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcC-CCCCeEeccCC
Q 042632 468 GLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSEL-NYLAIFNVSYN 546 (659)
Q Consensus 468 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N 546 (659)
.|+|++|++++.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.|+|++|.+++.+|..+..+ .++..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998764 46789999999
Q ss_pred ccccCCCC
Q 042632 547 DLLGPVPN 554 (659)
Q Consensus 547 ~l~~~~p~ 554 (659)
+..|..|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 87775543
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=4.8e-12 Score=132.61 Aligned_cols=180 Identities=29% Similarity=0.432 Sum_probs=120.6
Q ss_pred CCCcEEEccCCcCcCcCCCCCCCC-CCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEc
Q 042632 316 QVTRILDISGNKLYGPLEFSSNHS-SLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDI 394 (659)
Q Consensus 316 ~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (659)
+.++.+++.+|.++...+...... +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|......+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 455666666666655444444443 6777777777776 44456677777888888888777 45554446777778888
Q ss_pred cCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCC
Q 042632 395 SCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSN 474 (659)
Q Consensus 395 s~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 474 (659)
++|+++ .+|..... +..|++|++++|
T Consensus 194 s~N~i~-~l~~~~~~-----------------------------------------------------~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNKIS-DLPPEIEL-----------------------------------------------------LSALEELDLSNN 219 (394)
T ss_pred cCCccc-cCchhhhh-----------------------------------------------------hhhhhhhhhcCC
Confidence 888776 44443211 345777777777
Q ss_pred cCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCC
Q 042632 475 ELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPN 554 (659)
Q Consensus 475 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 554 (659)
++. ..+..+..+.++..+.+++|++. ..+..++.+++++.|++++|.++ .++. +..+.+++.|++++|.++...|.
T Consensus 220 ~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 220 SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 544 45556777777777777788776 44667777777888888888887 3333 67777888888888877766554
Q ss_pred C
Q 042632 555 S 555 (659)
Q Consensus 555 ~ 555 (659)
.
T Consensus 296 ~ 296 (394)
T COG4886 296 I 296 (394)
T ss_pred h
Confidence 4
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.3e-13 Score=138.26 Aligned_cols=176 Identities=28% Similarity=0.468 Sum_probs=156.1
Q ss_pred CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccc
Q 042632 337 NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEE 416 (659)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 416 (659)
.+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|+.+||+.|+++ .+|..++.++
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp----- 144 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP----- 144 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-----
Confidence 4445567899999998 78988888999999999999998 88999999999999999999998 7777776654
Q ss_pred cCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCC
Q 042632 417 SDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLS 496 (659)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 496 (659)
|+.|-+++|+++ .+|+.++.+..|..|+.+
T Consensus 145 -------------------------------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 145 -------------------------------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred -------------------------------------------------ceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence 788999999999 889999999999999999
Q ss_pred CCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCC
Q 042632 497 HNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLC 573 (659)
Q Consensus 497 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c 573 (659)
.|.+. .+|..++.+.+|+.|.++.|++. ..|+++..|+ |..||+|.|+++..+-....+..+..+.+..||..-
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 99998 88899999999999999999999 7788888766 999999999999854445888899999999999864
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=1.2e-11 Score=129.72 Aligned_cols=200 Identities=30% Similarity=0.361 Sum_probs=133.2
Q ss_pred EEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCC-CCCEEEccCcccc
Q 042632 33 VLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQY-DLRYIDLSHNNLA 111 (659)
Q Consensus 33 ~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~-~L~~L~Ls~n~l~ 111 (659)
.++++.|.+...+ ..+..++.++.|++.+|.++. ++....... +|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~---------------------i~~~~~~~~~nL~~L~l~~N~i~ 153 (394)
T COG4886 97 SLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITD---------------------IPPLIGLLKSNLKELDLSDNKIE 153 (394)
T ss_pred eeeccccccccCc--hhhhcccceeEEecCCccccc---------------------Cccccccchhhcccccccccchh
Confidence 5677777663122 345556677777777777663 333334442 6777777777776
Q ss_pred ccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhh
Q 042632 112 GTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPST 191 (659)
Q Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 191 (659)
.+|..+. .++.|+.|++++|+++..+......+.|+.|++++|++. .+|..... ...|+++.+++|.+. ..+..+
T Consensus 154 -~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~ 228 (394)
T COG4886 154 -SLPSPLR-NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSL 228 (394)
T ss_pred -hhhhhhh-ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhh
Confidence 5554443 677777777777777766544446677777777777776 56665432 455888888888544 456677
Q ss_pred cCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccc
Q 042632 192 GYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGL 264 (659)
Q Consensus 192 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 264 (659)
..+.++..+.+.+|++. .++.. ...++.+++|++++|.++.... +..+.+++.|++++|.+....+...
T Consensus 229 ~~~~~l~~l~l~~n~~~-~~~~~-~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 229 SNLKNLSGLELSNNKLE-DLPES-IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhcccccccccCCceee-eccch-hccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 78888888888888876 44443 3677778888888888876443 7778888888888888775555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.6e-12 Score=125.18 Aligned_cols=137 Identities=22% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccCh-hhhhCCCCC
Q 042632 144 SKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPK-QFLTGCVSL 222 (659)
Q Consensus 144 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L 222 (659)
.+++|+.|.++.|.++..--..+...+|+|+.|+|..|............+..|+.|||++|++. ..+. .....++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccch
Confidence 34555556666665553333333334677777777776422233333444566677777777665 3331 112455666
Q ss_pred CEEEccCccccccCCcC------CCCCCCCCEEEccCCCCCcc-ccccccCCCCCcEEEeeccccc
Q 042632 223 EFMNLSHNLFVGQIFPK------YMNLTQLAWLYLSDNQFTGR-LEEGLLNAPSLYILDVSNNMLS 281 (659)
Q Consensus 223 ~~L~l~~n~i~~~~~~~------~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~ 281 (659)
+.|+++.+.+....... ...+++|++|++..|+|..- .-..+..+++|+.|.+..|.+.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666666665432221 13455666666666665311 1112233444444444444443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=2.4e-12 Score=119.15 Aligned_cols=132 Identities=25% Similarity=0.246 Sum_probs=96.1
Q ss_pred CCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccc
Q 042632 362 DSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRI 441 (659)
Q Consensus 362 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (659)
...|+++|+++|.|+ .+.++..-.+.++.|++|+|.+... .. +.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~n-La--------------------------------- 326 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QN-LA--------------------------------- 326 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hh-hh---------------------------------
Confidence 356888888888887 5666677778888888888888622 11 11
Q ss_pred ccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcC
Q 042632 442 KSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSY 521 (659)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 521 (659)
.+++|+.||||+|.++ .+..+-..+-+.++|+|+.|.+.. -+.++.+-+|..||+++
T Consensus 327 --------------------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 327 --------------------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSS 383 (490)
T ss_pred --------------------hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccc
Confidence 1677888888888888 444555677788888888888863 24677788888888888
Q ss_pred CcccccC-ChhhhcCCCCCeEeccCCccccCC
Q 042632 522 NELSGRI-PLELSELNYLAIFNVSYNDLLGPV 552 (659)
Q Consensus 522 N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~ 552 (659)
|+|.... -..++++|-|+.+.+.+|++.+.+
T Consensus 384 N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 384 NQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 8886322 245677888888888888888754
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.7e-12 Score=125.04 Aligned_cols=210 Identities=23% Similarity=0.235 Sum_probs=102.8
Q ss_pred CCCCCCEEECCCCCCcCCCCh-hhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEc
Q 042632 27 NLTYLRVLNLSSNQLSGSLPI-SVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDL 105 (659)
Q Consensus 27 ~l~~L~~L~Ls~n~l~~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~L 105 (659)
+++.|+...|.++... ..+. +....|++++.|||++|-+....+ .......+++|+.|++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~------------------v~~i~eqLp~Le~LNl 179 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFP------------------VLKIAEQLPSLENLNL 179 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHH------------------HHHHHHhcccchhccc
Confidence 4455555555555543 2221 234455555555555555442222 2233344555555555
Q ss_pred cCccccccCchHHhhcCCCCCEEEccCcccccc--cCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcc
Q 042632 106 SHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR--LHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSF 183 (659)
Q Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i 183 (659)
+.|++.-......-..+++|+.|.++.|.++.. ......+|+|+.|++.+|.....-.... ..++.|++|||++|++
T Consensus 180 s~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 180 SSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNL 258 (505)
T ss_pred ccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcc
Confidence 555554211111122345555555555555421 1122245555555555553111111111 1245666677766665
Q ss_pred cccCC--hhhcCCCCCCEEeCcCCcCcccc--Chh----hhhCCCCCCEEEccCcccccc-CCcCCCCCCCCCEEEccCC
Q 042632 184 VGSIP--PSTGYMERLLFLDLSSNNFSGEL--PKQ----FLTGCVSLEFMNLSHNLFVGQ-IFPKYMNLTQLAWLYLSDN 254 (659)
Q Consensus 184 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~--~~~----~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n 254 (659)
.. .+ ...+.++.|+.|+++.+.+. ++ |+. .....++|++|++..|++... ....+..+++|+.|.+..|
T Consensus 259 i~-~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 259 ID-FDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cc-cccccccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 42 22 34456666666777666665 22 111 113457788888888877432 1123445667777777777
Q ss_pred CCCc
Q 042632 255 QFTG 258 (659)
Q Consensus 255 ~i~~ 258 (659)
.+..
T Consensus 337 ~ln~ 340 (505)
T KOG3207|consen 337 YLNK 340 (505)
T ss_pred cccc
Confidence 7663
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=3.1e-11 Score=107.77 Aligned_cols=88 Identities=33% Similarity=0.384 Sum_probs=27.4
Q ss_pred ccCCCCCCEEECCCCCCcCCCChhhhc-CCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEE
Q 042632 25 LSNLTYLRVLNLSSNQLSGSLPISVFA-NLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYI 103 (659)
Q Consensus 25 ~~~l~~L~~L~Ls~n~l~~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L 103 (659)
+.++.++++|+|++|.|. .|. .++ .+.+|+.|++++|.++.. +.+..+++|++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l----------------------~~l~~L~~L~~L 69 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKL----------------------EGLPGLPRLKTL 69 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S------------------------TT----TT--EE
T ss_pred cccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCccc----------------------cCccChhhhhhc
Confidence 556667888888888887 665 354 577888888888887732 234567788888
Q ss_pred EccCccccccCchHHhhcCCCCCEEEccCcccccc
Q 042632 104 DLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR 138 (659)
Q Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 138 (659)
++++|.++ .++..+...+++|++|++++|+|...
T Consensus 70 ~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 70 DLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp E--SS----S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred ccCCCCCC-ccccchHHhCCcCCEEECcCCcCCCh
Confidence 88888888 66655544678888888888888764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=7.3e-12 Score=116.02 Aligned_cols=131 Identities=26% Similarity=0.315 Sum_probs=104.0
Q ss_pred CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccc
Q 042632 337 NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEE 416 (659)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 416 (659)
....|+++|+++|.|+ .+.+...-.|.++.|++++|.+... . .+..+++|+.||||+|.++ .+..+-.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-------- 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA-ECVGWHL-------- 349 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH-hhhhhHh--------
Confidence 3457888999999888 6667777889999999999999833 3 3888999999999999887 2222211
Q ss_pred cCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCC
Q 042632 417 SDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLS 496 (659)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 496 (659)
.+.+++.|.|++|.|... ..++.+-+|..||++
T Consensus 350 ---------------------------------------------KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 350 ---------------------------------------------KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLS 382 (490)
T ss_pred ---------------------------------------------hhcCEeeeehhhhhHhhh--hhhHhhhhheecccc
Confidence 166789999999998732 357888999999999
Q ss_pred CCcCcccC-CccccccCCCCEEECcCCcccc
Q 042632 497 HNHFSGSI-PRSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 497 ~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
+|+|.... ...++++|.|+.+.|.+|++.+
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99997443 3578999999999999999984
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=4.4e-11 Score=106.85 Aligned_cols=109 Identities=31% Similarity=0.359 Sum_probs=41.8
Q ss_pred CCCCCEEeCCCCcCcccCCcccc-CCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCc
Q 042632 4 LKNLVELNLSGNKFDGSLPQCLS-NLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLE 82 (659)
Q Consensus 4 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (659)
..++++|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+ .++ .+..+++|++|++++|+++.
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~-------------- 78 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISS-------------- 78 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--------------
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCc--------------
Confidence 45689999999999843 3465 5789999999999998 787 68899999999999999883
Q ss_pred cccccccchhhh-hCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccc
Q 042632 83 HCNISGTIASFL-QYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR 138 (659)
Q Consensus 83 ~~~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 138 (659)
+...+ ..+++|++|++++|++...-.-...+.+++|++|++.+|.++..
T Consensus 79 -------i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 79 -------ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp --------CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred -------cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 22333 46899999999999998322222345789999999999988743
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1.1e-11 Score=117.57 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=76.7
Q ss_pred CCCCCcEEEeecccccCCC----ChhhhCCCCCCEEEccCCccccc----CCccCCCCCCCcEEEccCCcCcCcCC----
Q 042632 266 NAPSLYILDVSNNMLSGQL----PHWAGNFSNLDVLLMSRNSLEGD----VSVPLSNLQVTRILDISGNKLYGPLE---- 333 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~---- 333 (659)
.-+.|+++...+|++.... ...|...+.|+.+.+..|.+... ...++..+++|++||+.+|.++....
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3455666666666554321 12334455666666666655421 11345566666666666666543211
Q ss_pred -CCCCCCCCcEEEccCCcCCCCCchhh-----hcCCCCceEecCCCccccc----CCccccCCCCCcEEEccCCcCC
Q 042632 334 -FSSNHSSLRHLFLHNNSLNGNIPHLI-----NEDSNLRALLLRGNNLQGN----IPEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 334 -~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
....++.|+.+++++|.+.......+ ...|+|++|.+.+|.|+.. +.......+.|..|+|++|.+.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 11245567777777777764433332 3467888888888887532 2233455778888888888873
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=1.9e-11 Score=116.09 Aligned_cols=136 Identities=22% Similarity=0.265 Sum_probs=100.4
Q ss_pred CCCCCCCEEEccCCCCCcc----ccccccCCCCCcEEEeecccccCC----CChhhhCCCCCCEEEccCCcccccC----
Q 042632 241 MNLTQLAWLYLSDNQFTGR----LEEGLLNAPSLYILDVSNNMLSGQ----LPHWAGNFSNLDVLLMSRNSLEGDV---- 308 (659)
Q Consensus 241 ~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~---- 308 (659)
..-++|+.+...+|++... +...|...+.|+.+.++.|.|... ....+..+++|+.|++.+|.++...
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3456788888888887643 334566778899999998888632 2245678899999999999876432
Q ss_pred CccCCCCCCCcEEEccCCcCcCcCCCC------CCCCCCcEEEccCCcCCCC----CchhhhcCCCCceEecCCCccc
Q 042632 309 SVPLSNLQVTRILDISGNKLYGPLEFS------SNHSSLRHLFLHNNSLNGN----IPHLINEDSNLRALLLRGNNLQ 376 (659)
Q Consensus 309 ~~~l~~l~~L~~L~l~~n~l~~~~~~~------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 376 (659)
...++.+++|+.|++++|.+....... ...|+|+.|.+.+|.++.. +...+...|.|..|+|++|++.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 345677889999999999886533221 1578999999999998742 2334566899999999999994
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=9.3e-11 Score=122.93 Aligned_cols=224 Identities=25% Similarity=0.231 Sum_probs=111.0
Q ss_pred cCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEE
Q 042632 265 LNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHL 344 (659)
Q Consensus 265 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 344 (659)
..+++|+.+++.+|++. .+...+..+++|++|++++|.|+... .+..+..|+.|++++|.+..... ...++.|+.+
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 33444444444444444 11221334444555555555444222 22333335555555555543221 1124555566
Q ss_pred EccCCcCCCCCc-hhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCc
Q 042632 345 FLHNNSLNGNIP-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGF 423 (659)
Q Consensus 345 ~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~ 423 (659)
++++|.+...-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.++..-+..
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~----------------- 227 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLN----------------- 227 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcc-----------------
Confidence 666665553322 1 3555666666666666652 122333444444455555554211100
Q ss_pred eeeccccccccCCcccccccccceEeeeccccccccccccc--cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCc
Q 042632 424 VIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLN--YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFS 501 (659)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 501 (659)
.+. +|+.+++++|++. ..+..+..+..+..|++.+|++.
T Consensus 228 --------------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 228 --------------------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred --------------------------------------cchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 011 2666777777776 33345666677777777777775
Q ss_pred ccCCccccccCCCCEEECcCCccccc---CChh-hhcCCCCCeEeccCCccccCCC
Q 042632 502 GSIPRSFSILKMIESMDLSYNELSGR---IPLE-LSELNYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 502 ~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l~~N~l~~~~p 553 (659)
.. ..+...+.+..+..+.|.+... .... ....+.++...+.+|+.....+
T Consensus 269 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 269 NL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 32 2345556666666666665421 1111 3455667777777777666443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=8e-10 Score=81.05 Aligned_cols=59 Identities=37% Similarity=0.513 Sum_probs=29.1
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCc
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNE 523 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 523 (659)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554444444555555555555555554444445555555555555544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=8.2e-10 Score=81.00 Aligned_cols=61 Identities=38% Similarity=0.521 Sum_probs=57.4
Q ss_pred ccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcc
Q 042632 488 QELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDL 548 (659)
Q Consensus 488 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 548 (659)
++|++|++++|+++...+..|..+++|++|++++|.++...|+.|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977778999999999999999999988889999999999999999985
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=1e-10 Score=122.68 Aligned_cols=247 Identities=28% Similarity=0.286 Sum_probs=145.0
Q ss_pred cCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEc
Q 042632 26 SNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDL 105 (659)
Q Consensus 26 ~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~L 105 (659)
..+..++.+++..|.+. .+- ..+..+++|+.|++.+|.++.... .+..+++|++|++
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~i~~---------------------~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEKIEN---------------------LLSSLVNLQVLDL 125 (414)
T ss_pred HHhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhhccc---------------------chhhhhcchheec
Confidence 34556666666667665 332 346667777777777776663211 1455667777777
Q ss_pred cCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccc
Q 042632 106 SHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVG 185 (659)
Q Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 185 (659)
++|.|+ .+.. .+.++.|+.|++++|.|+.+.... .++.|+.+++++|++...-+... ..+.+++.+++.+|.+.
T Consensus 126 s~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~~~~-~l~~L~~l~l~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~- 199 (414)
T KOG0531|consen 126 SFNKIT-KLEG--LSTLTLLKELNLSGNLISDISGLE-SLKSLKLLDLSYNRIVDIENDEL-SELISLEELDLGGNSIR- 199 (414)
T ss_pred cccccc-cccc--hhhccchhhheeccCcchhccCCc-cchhhhcccCCcchhhhhhhhhh-hhccchHHHhccCCchh-
Confidence 777776 4333 224556777777777776654322 26677777777777663333111 23677777888887775
Q ss_pred cCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCC--CCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcccccc
Q 042632 186 SIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVS--LEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEG 263 (659)
Q Consensus 186 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 263 (659)
....+..+..+..+++..|.++ .+... ..+.. |+.+++++|.+.... ..+..+.++..|++.+|++... ..
T Consensus 200 -~i~~~~~~~~l~~~~l~~n~i~-~~~~l--~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 200 -EIEGLDLLKKLVLLSLLDNKIS-KLEGL--NELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred -cccchHHHHHHHHhhcccccce-eccCc--ccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--cc
Confidence 2334445555555677777776 33221 12222 777788888776421 4456667777888887777643 23
Q ss_pred ccCCCCCcEEEeecccccCC---CCh-hhhCCCCCCEEEccCCcccccC
Q 042632 264 LLNAPSLYILDVSNNMLSGQ---LPH-WAGNFSNLDVLLMSRNSLEGDV 308 (659)
Q Consensus 264 ~~~l~~L~~L~L~~n~l~~~---~~~-~l~~l~~L~~L~l~~n~l~~~~ 308 (659)
+...+.+..+....+.+... ... .....+.++...+..|......
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 44455666666666665421 111 1345567777777777665433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.3e-09 Score=121.95 Aligned_cols=270 Identities=21% Similarity=0.174 Sum_probs=154.2
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCC--CcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQ--LSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLE 82 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 82 (659)
...+...+.+|.+. .++.+. .++.|++|-+.+|. +. .++.+.|..|+.|++|||++|.--
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l--------------- 584 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSL--------------- 584 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCcc---------------
Confidence 34567777777765 344433 34578888888886 54 677667888999999999875421
Q ss_pred cccccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCccccccc-CCCCCCCCccEEEcccCcCc--
Q 042632 83 HCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRL-HLPDSKRDLLHLVISNNNFI-- 159 (659)
Q Consensus 83 ~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~-- 159 (659)
+.+|..++.+-+||+|++++..+. .+|..+. ++.+|.+|++..+...... .....+++|++|.+......
T Consensus 585 -----~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~ 657 (889)
T KOG4658|consen 585 -----SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND 657 (889)
T ss_pred -----CcCChHHhhhhhhhcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccc
Confidence 147788888888888888888888 8888875 7888888888876543332 23335788888887765411
Q ss_pred ccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCC----EEeCcCCcCccccChhhhhCCCCCCEEEccCcccccc
Q 042632 160 GTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLL----FLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQ 235 (659)
Q Consensus 160 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 235 (659)
...-..+ ..+.+|+.+....... .+...+..+..|. .+.+.++... ..+.. ...+.+|+.|.+.++.+...
T Consensus 658 ~~~l~el-~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~-~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 658 KLLLKEL-ENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISS-LGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hhhHHhh-hcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecc-cccccCcceEEEEcCCCchh
Confidence 1111112 1244455444433222 1112223333333 2333333333 22222 35678888888888877643
Q ss_pred CCcCCCC------CCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCccc
Q 042632 236 IFPKYMN------LTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLE 305 (659)
Q Consensus 236 ~~~~~~~------l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 305 (659)
....... ++++..+...++... ..+......++|+.|.+..+.....+......+..++.+.+..+.+.
T Consensus 733 ~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 733 VIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred hcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 3322111 222333333333222 12222334677888888777766555555555555555444444444
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=2.3e-09 Score=120.06 Aligned_cols=56 Identities=29% Similarity=0.278 Sum_probs=36.4
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCccc-CCccccccCCCCEEE
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGS-IPRSFSILKMIESMD 518 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ 518 (659)
.++|+.|.+.++.....+.+....+..++.+-+..+.+.+. .-...+.++++..+.
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~ 825 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP 825 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc
Confidence 57888888888877766666677777777767777776654 233344444444333
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.67 E-value=5.5e-10 Score=115.59 Aligned_cols=105 Identities=28% Similarity=0.349 Sum_probs=57.8
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCc-cccccCCCCEEECcCCcccccCChhhhcCCCCCeE
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPR-SFSILKMIESMDLSYNELSGRIPLELSELNYLAIF 541 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 541 (659)
++.++.|||++|+++... .+..++.|+.|||++|.+. .+|. ....+. |..|.+++|.++. + ..+.+|.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhcc
Confidence 455666666666666322 5666666666666666666 3332 223333 6666666666652 2 235566666666
Q ss_pred eccCCccccCCCC--CCCCCCCCcCccCCCCCCC
Q 042632 542 NVSYNDLLGPVPN--SRQFANFDENNYRGNPLLC 573 (659)
Q Consensus 542 ~l~~N~l~~~~p~--~~~~~~l~~~~~~~N~~~c 573 (659)
|+++|-+.+--.- .+.+..+..+.+.|||..|
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6666665542111 1233444555666666666
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.1e-09 Score=99.96 Aligned_cols=60 Identities=20% Similarity=0.056 Sum_probs=28.9
Q ss_pred CCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcC---CCCCCCCCEEEccCC
Q 042632 193 YMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPK---YMNLTQLAWLYLSDN 254 (659)
Q Consensus 193 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~n 254 (659)
.+++|..|||++|.....--...+..++.|++|.++.|.. ++|.. +...|.|.+|++.++
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 4555555555554321111111123455666666665542 22322 345566777766655
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.48 E-value=9.4e-09 Score=84.53 Aligned_cols=61 Identities=30% Similarity=0.493 Sum_probs=39.3
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCccc
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 525 (659)
++.++.|++++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..+.+|-.||..+|.+.
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 345666666666666 56666666666666666666666 55666666666666666666665
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=2.4e-09 Score=110.95 Aligned_cols=58 Identities=26% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCC
Q 042632 340 SLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
.|...+.++|.+. .....+.-++.|+.|+|++|+++.. +.+..+++|+.|||++|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 4555555666555 4445555556666666666666522 24556666666666666665
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.43 E-value=6.8e-08 Score=88.91 Aligned_cols=245 Identities=22% Similarity=0.218 Sum_probs=115.0
Q ss_pred CCCCCEEeCCCCcCcccC----CccccCCCCCCEEECCCCCCc---CCCC------hhhhcCCCCCCEEEccCccccccc
Q 042632 4 LKNLVELNLSGNKFDGSL----PQCLSNLTYLRVLNLSSNQLS---GSLP------ISVFANLTSLEYLSLSDKKFQGSF 70 (659)
Q Consensus 4 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~---~~l~------~~~~~~l~~L~~L~L~~n~l~~~~ 70 (659)
+..++.+|||+|-|...- ...+++-.+|+..+++.-... +.++ ..++-+|++|+..+||+|.+...+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 345566666666654322 223344456666666543221 1111 123455666666666666655333
Q ss_pred ChhhhccCCCCccccccccchhhhhCCCCCCEEEccCccccc----cCchHHhhcCCCCCEEEccCcccccccCCCCCCC
Q 042632 71 SLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSHNNLAG----TIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKR 146 (659)
Q Consensus 71 ~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 146 (659)
+.. +.+.+++-+.|++|.+++|.+.. .+...++ ++ ..| .-....|
T Consensus 109 ~e~----------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~-~l--------a~n------KKaa~kp 157 (388)
T COG5238 109 PEE----------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALF-HL--------AYN------KKAADKP 157 (388)
T ss_pred chH----------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHH-HH--------HHH------hhhccCC
Confidence 321 33445555666666666665541 1111111 00 000 0011334
Q ss_pred CccEEEcccCcCcccCChh----hhhcCCCCcEEEcccCcccccC-----ChhhcCCCCCCEEeCcCCcCccccCh----
Q 042632 147 DLLHLVISNNNFIGTLPDN----FGVILPELVYLDMSQNSFVGSI-----PPSTGYMERLLFLDLSSNNFSGELPK---- 213 (659)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~---- 213 (659)
.|+......|++. ..+.. .+..-.+|+++.+..|.|.... ...+..+.+|+.||+++|.++ ...+
T Consensus 158 ~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft-~~gS~~La 235 (388)
T COG5238 158 KLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT-LEGSRYLA 235 (388)
T ss_pred CceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh-hhhHHHHH
Confidence 4555555555443 22211 1111135666666666554210 112344566666666666665 2111
Q ss_pred hhhhCCCCCCEEEccCccccccCCcC----C--CCCCCCCEEEccCCCCCcccccc-----c--cCCCCCcEEEeecccc
Q 042632 214 QFLTGCVSLEFMNLSHNLFVGQIFPK----Y--MNLTQLAWLYLSDNQFTGRLEEG-----L--LNAPSLYILDVSNNML 280 (659)
Q Consensus 214 ~~~~~l~~L~~L~l~~n~i~~~~~~~----~--~~l~~L~~L~l~~n~i~~~~~~~-----~--~~l~~L~~L~L~~n~l 280 (659)
..+...+.|+.|.+..|-++.....+ | ...|+|..|-..+|.+.+..... + ..+|-|..|.+.+|++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 11233455667777666654322211 1 13466777777777654322111 1 2467777888888888
Q ss_pred c
Q 042632 281 S 281 (659)
Q Consensus 281 ~ 281 (659)
.
T Consensus 316 ~ 316 (388)
T COG5238 316 K 316 (388)
T ss_pred h
Confidence 6
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.4e-07 Score=86.54 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=37.0
Q ss_pred CCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcccccc-CCcCCCCCCCCCEEEccCCCCCccccc------cccCC
Q 042632 195 ERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQ-IFPKYMNLTQLAWLYLSDNQFTGRLEE------GLLNA 267 (659)
Q Consensus 195 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~------~~~~l 267 (659)
+++..+-+..|++...-...-+...+.+..|+|+.++|... ..+++.++++|..|.+.++.+.+.... -++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 34444444445443111111123344444555555555431 122345556666666666655432211 13455
Q ss_pred CCCcEEEee
Q 042632 268 PSLYILDVS 276 (659)
Q Consensus 268 ~~L~~L~L~ 276 (659)
++++.|+=+
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 666666533
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.7e-08 Score=92.69 Aligned_cols=86 Identities=22% Similarity=0.243 Sum_probs=40.1
Q ss_pred ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCc-CccccChhhhhCCCCCCEEE
Q 042632 148 LLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNN-FSGELPKQFLTGCVSLEFMN 226 (659)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~ 226 (659)
|+++|+++..++..--..+...+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++..-..-++..|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 55555555544433222233334555555555555554444455555555555555432 22111222344555555555
Q ss_pred ccCcccc
Q 042632 227 LSHNLFV 233 (659)
Q Consensus 227 l~~n~i~ 233 (659)
++.|.+.
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 5555443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=6e-07 Score=83.94 Aligned_cols=186 Identities=21% Similarity=0.125 Sum_probs=98.7
Q ss_pred CCCCCCEEEccCccccc-cCchHHhhcCCCCCEEEccCcccccccC-CCCCCCCccEEEcccCcCcccCChhhhhcCCCC
Q 042632 96 YQYDLRYIDLSHNNLAG-TIPTWLLQNNTKLEILFLFNNFLTGRLH-LPDSKRDLLHLVISNNNFIGTLPDNFGVILPEL 173 (659)
Q Consensus 96 ~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 173 (659)
.++.++++||.+|.+++ +-...+..++|.|++|+++.|++..... .+....+|+.|-+.+..+...-.+.+...+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35677778888887762 1112345678888888888887765322 334566777777777766555555555667888
Q ss_pred cEEEcccCcccc--cCChhhcC-CCCCCEEeCcCCcCccccC-hhhhhCCCCCCEEEccCccccccCC-cCCCCCCCCCE
Q 042632 174 VYLDMSQNSFVG--SIPPSTGY-MERLLFLDLSSNNFSGELP-KQFLTGCVSLEFMNLSHNLFVGQIF-PKYMNLTQLAW 248 (659)
Q Consensus 174 ~~L~L~~n~i~~--~~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~ 248 (659)
++|+++.|...- ........ -+.+++|....|....-.. ..+..-.+++..+-+..|.+..... ..+..++.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 888888874321 11111111 1234444444443220000 0001223555556666665543221 23444555556
Q ss_pred EEccCCCCCc-cccccccCCCCCcEEEeeccccc
Q 042632 249 LYLSDNQFTG-RLEEGLLNAPSLYILDVSNNMLS 281 (659)
Q Consensus 249 L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~ 281 (659)
|+++.|+|.+ ..-+++..+++|..|.++++.+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 6666666542 12234555666666666666554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=1.1e-07 Score=78.33 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=44.6
Q ss_pred cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEcc
Q 042632 149 LHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLS 228 (659)
Q Consensus 149 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 228 (659)
+..++++|.+. .+|..+...++.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|.-++. +.++..|+..
T Consensus 56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~ 131 (177)
T KOG4579|consen 56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLDSP 131 (177)
T ss_pred EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhcCC
Confidence 33444444443 445555544556666666666665 45655666666666666666665 55554433 5555555555
Q ss_pred Ccccc
Q 042632 229 HNLFV 233 (659)
Q Consensus 229 ~n~i~ 233 (659)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55544
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=4.4e-06 Score=55.83 Aligned_cols=36 Identities=56% Similarity=0.723 Sum_probs=18.3
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCc
Q 042632 6 NLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLS 42 (659)
Q Consensus 6 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 42 (659)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=8.8e-07 Score=81.74 Aligned_cols=16 Identities=19% Similarity=-0.031 Sum_probs=9.6
Q ss_pred cCCCCCEEEccCcccc
Q 042632 121 NNTKLEILFLFNNFLT 136 (659)
Q Consensus 121 ~l~~L~~L~L~~n~i~ 136 (659)
.+..+..++|++|.|.
T Consensus 28 ~~d~~~evdLSGNtig 43 (388)
T COG5238 28 MMDELVEVDLSGNTIG 43 (388)
T ss_pred hhcceeEEeccCCccc
Confidence 3556666666666554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.1e-06 Score=55.52 Aligned_cols=36 Identities=47% Similarity=0.715 Sum_probs=19.3
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCc
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFS 501 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 501 (659)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 34444555666666666666555
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=4.4e-05 Score=77.11 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=18.2
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCC
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHN 498 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 498 (659)
+++|+.|++++|... ..|+.+. .+|+.|+++.|
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 346666666666654 3333333 45666666655
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=2.1e-05 Score=69.86 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=41.6
Q ss_pred CCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccCcc
Q 042632 30 YLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSHNN 109 (659)
Q Consensus 30 ~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~ 109 (659)
+...+||++|++. .++ .|.++++|.+|.+++|+|+.+ .|..-.-+++|+.|.|.+|.
T Consensus 43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I--------------------~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRI--------------------DPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccceecccccchh-hcc--cCCCccccceEEecCCcceee--------------------ccchhhhccccceEEecCcc
Confidence 4555666666654 443 455666666666666655532 22222334455666666665
Q ss_pred ccccCch-HHhhcCCCCCEEEccCcccc
Q 042632 110 LAGTIPT-WLLQNNTKLEILFLFNNFLT 136 (659)
Q Consensus 110 l~~~~~~-~~~~~l~~L~~L~L~~n~i~ 136 (659)
+. .+.+ .-...|++|++|.+-+|.++
T Consensus 100 i~-~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 100 IQ-ELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred hh-hhhhcchhccCCccceeeecCCchh
Confidence 54 2111 11224555555555555554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=0.00012 Score=74.03 Aligned_cols=138 Identities=18% Similarity=0.244 Sum_probs=83.2
Q ss_pred CCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCC-cccccCCccccCCCCCc
Q 042632 312 LSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGN-NLQGNIPEPLCHLRKLS 390 (659)
Q Consensus 312 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 390 (659)
+..+..++.|++++|.++... ..+++|++|.+++|.--..+|..+. ++|+.|++++| .+. .+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence 344577888888888776543 2345688888887544335565442 57888888887 443 3443 466
Q ss_pred EEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEE
Q 042632 391 IVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLD 470 (659)
Q Consensus 391 ~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 470 (659)
.|+++++.... ++ . .+++|+.|.
T Consensus 116 ~L~L~~n~~~~-L~----~----------------------------------------------------LPssLk~L~ 138 (426)
T PRK15386 116 SLEIKGSATDS-IK----N----------------------------------------------------VPNGLTSLS 138 (426)
T ss_pred eEEeCCCCCcc-cc----c----------------------------------------------------CcchHhhee
Confidence 67776654431 11 1 135677777
Q ss_pred ccCCc-Cc-ccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCc
Q 042632 471 LSSNE-LT-GDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNE 523 (659)
Q Consensus 471 Ls~n~-l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 523 (659)
+.+++ .. ...|.. --++|++|++++|... ..|..+. .+|+.|+++.|.
T Consensus 139 I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 139 INSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 75433 11 011211 1157999999998876 4555443 688999988774
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=4.2e-05 Score=67.95 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=4.0
Q ss_pred CCCCcEEEcc
Q 042632 315 LQVTRILDIS 324 (659)
Q Consensus 315 l~~L~~L~l~ 324 (659)
+++|++||+.
T Consensus 139 lp~l~~LDF~ 148 (233)
T KOG1644|consen 139 LPSLRTLDFQ 148 (233)
T ss_pred cCcceEeehh
Confidence 3344444433
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.8e-05 Score=86.82 Aligned_cols=135 Identities=21% Similarity=0.160 Sum_probs=85.2
Q ss_pred CCCCEEEccCccc-cccCchHHhhcCCCCCEEEccCcccccc--cCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCc
Q 042632 98 YDLRYIDLSHNNL-AGTIPTWLLQNNTKLEILFLFNNFLTGR--LHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELV 174 (659)
Q Consensus 98 ~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 174 (659)
.+|++||++|... ...-|..+...+|+|+.|.+.+-.+... ...-..+++|..||+|+.+++.. .++. .+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHH
Confidence 4677888877543 2234445566778888888877655432 12333778888888888776632 3444 377888
Q ss_pred EEEcccCcccc-cCChhhcCCCCCCEEeCcCCcCccccChh------hhhCCCCCCEEEccCccccccC
Q 042632 175 YLDMSQNSFVG-SIPPSTGYMERLLFLDLSSNNFSGELPKQ------FLTGCVSLEFMNLSHNLFVGQI 236 (659)
Q Consensus 175 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~l~~L~~L~l~~n~i~~~~ 236 (659)
+|.+.+-.+.. ..-..+.++++|+.||+|..... ..+.- ....+|.|+.||.|++.+....
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 88777766542 22345677888888888876654 22211 1234788888888887776543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.64 E-value=2.3e-06 Score=83.97 Aligned_cols=280 Identities=18% Similarity=0.105 Sum_probs=156.7
Q ss_pred CCCEEeCCCCcCccc--CCccccCCCCCCEEECCCCCCcCCCC-hhhhcCCCCCCEEEccCcc-cccccChhhhccCCCC
Q 042632 6 NLVELNLSGNKFDGS--LPQCLSNLTYLRVLNLSSNQLSGSLP-ISVFANLTSLEYLSLSDKK-FQGSFSLSVLANHSRL 81 (659)
Q Consensus 6 ~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L 81 (659)
.|+.|.+.++.-.+. .-..-.+|++++.|++.+|....... ...-..+++|++|++..|. ++..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~------------ 206 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV------------ 206 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH------------
Confidence 467888888754322 22334578999999998886321111 1122457889999988753 2211
Q ss_pred ccccccccchhhhhCCCCCCEEEccCcc-ccccCchHHhhcCCCCCEEEccCcccccc---cCCCCCCCCccEEEcccCc
Q 042632 82 EHCNISGTIASFLQYQYDLRYIDLSHNN-LAGTIPTWLLQNNTKLEILFLFNNFLTGR---LHLPDSKRDLLHLVISNNN 157 (659)
Q Consensus 82 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~~---~~~~~~~~~L~~L~l~~n~ 157 (659)
.+...-..+++|++|+++.+. +++.-...++.++..++.+.+.+|.=.+. .........+.++++..|.
T Consensus 207 -------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 207 -------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred -------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc
Confidence 011233457788888888774 44433344555677777776665532211 1112234455566655553
Q ss_pred -CcccCChhhhhcCCCCcEEEcccCcc-cccCChhh-cCCCCCCEEeCcCCcCcccc-ChhhhhCCCCCCEEEccCcccc
Q 042632 158 -FIGTLPDNFGVILPELVYLDMSQNSF-VGSIPPST-GYMERLLFLDLSSNNFSGEL-PKQFLTGCVSLEFMNLSHNLFV 233 (659)
Q Consensus 158 -l~~~~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~i~ 233 (659)
+++.---.+...+..|+.|+.+++.- +...-.++ .+..+|+.|.++.++.-+.. -..+-.+++.|+.+++..+...
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 22222122233456777887777643 21111222 34577888888777632111 1122345677888888777543
Q ss_pred cc--CCcCCCCCCCCCEEEccCCCCCccc-----cccccCCCCCcEEEeeccccc-CCCChhhhCCCCCCEEEccCCcc
Q 042632 234 GQ--IFPKYMNLTQLAWLYLSDNQFTGRL-----EEGLLNAPSLYILDVSNNMLS-GQLPHWAGNFSNLDVLLMSRNSL 304 (659)
Q Consensus 234 ~~--~~~~~~~l~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l 304 (659)
.. ....-.+++.|+.+.++.+...... ...-..+..|..+.+++++.. +..-..+..+++|+.+++-+++-
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 22 1222346778888888877533111 222345677888888888654 23344566778888888877753
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.3e-05 Score=86.05 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=42.5
Q ss_pred hhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccC--CCCCCCCccEEEcccCcCcccC--Ch---hh
Q 042632 94 LQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLH--LPDSKRDLLHLVISNNNFIGTL--PD---NF 166 (659)
Q Consensus 94 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~---~~ 166 (659)
..++++|..||+|+.+++ .+ .++ +++++|+.|.+.+=.+..... ..+.+++|+.||+|.......- .. ..
T Consensus 169 c~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hhccCccceeecCCCCcc-Cc-HHH-hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 344555555555555554 33 222 255555555555444432111 1234555555555554322110 00 11
Q ss_pred hhcCCCCcEEEcccCccccc
Q 042632 167 GVILPELVYLDMSQNSFVGS 186 (659)
Q Consensus 167 ~~~l~~L~~L~L~~n~i~~~ 186 (659)
+..+|+|+.||.|++.+...
T Consensus 246 ~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cccCccccEEecCCcchhHH
Confidence 22367777777777766543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.63 E-value=0.00017 Score=62.10 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=41.6
Q ss_pred hhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCC
Q 042632 167 GVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQL 246 (659)
Q Consensus 167 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 246 (659)
+..+++|+.+.+.. .+.......|..+++|+.+.+.++ +. .++...|..+++++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33345555555553 333334444555555666555553 43 55555555555555555543 3333333445555555
Q ss_pred CEEEccCCCCCccccccccCCCCCcEEEeec
Q 042632 247 AWLYLSDNQFTGRLEEGLLNAPSLYILDVSN 277 (659)
Q Consensus 247 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 277 (659)
+.+.+..+ +.......|... +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55555443 333333444444 555554443
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.59 E-value=2.7e-06 Score=83.45 Aligned_cols=153 Identities=20% Similarity=0.104 Sum_probs=79.3
Q ss_pred CCCCCCEEEccCCC-CCcccccc-ccCCCCCcEEEeecccc-cCCCChhh-hCCCCCCEEEccCCccccc--CCccCCCC
Q 042632 242 NLTQLAWLYLSDNQ-FTGRLEEG-LLNAPSLYILDVSNNML-SGQLPHWA-GNFSNLDVLLMSRNSLEGD--VSVPLSNL 315 (659)
Q Consensus 242 ~l~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~l~~n~l~~~--~~~~l~~l 315 (659)
.+..|+.|+.+++. ++...-.+ -.+.++|+.+.++.++- ++.--..+ .+++.|+.+++.++..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34556666665543 22211111 23456666666666652 21111122 2355667777666643211 11222356
Q ss_pred CCCcEEEccCCcCcCcC------CCCCCCCCCcEEEccCCcCC-CCCchhhhcCCCCceEecCCCccccc--CCccccCC
Q 042632 316 QVTRILDISGNKLYGPL------EFSSNHSSLRHLFLHNNSLN-GNIPHLINEDSNLRALLLRGNNLQGN--IPEPLCHL 386 (659)
Q Consensus 316 ~~L~~L~l~~n~l~~~~------~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l 386 (659)
+.|+.+.+++|...... ........+..+.++++... +..-+.+..+++|+.+++.+++-... +...-.++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 67777777766543221 11125667888888887643 33345567788888888887754211 22223456
Q ss_pred CCCcEEEc
Q 042632 387 RKLSIVDI 394 (659)
Q Consensus 387 ~~L~~L~L 394 (659)
+++++..+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 66666544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00029 Score=60.67 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=43.0
Q ss_pred hhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCC
Q 042632 190 STGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPS 269 (659)
Q Consensus 190 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 269 (659)
.|..+++|+.+.+.. .+. .++...|..+++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 445555566665553 344 555555555555666655543 4444444455555555555543 333233444555555
Q ss_pred CcEEEeecccccCCCChhhhCCCCCCEEEccC
Q 042632 270 LYILDVSNNMLSGQLPHWAGNFSNLDVLLMSR 301 (659)
Q Consensus 270 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 301 (659)
|+.+++..+ +.......+..+ .++.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555555443 332333444444 555555543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=3.2e-05 Score=71.97 Aligned_cols=102 Identities=27% Similarity=0.267 Sum_probs=67.9
Q ss_pred CCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcc
Q 042632 4 LKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEH 83 (659)
Q Consensus 4 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (659)
+.+.+.|+.-+|.++++ ....+++.|++|.||-|+|+ ++. .|..|++|++|+|..|.|...-
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sld------------- 79 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLD------------- 79 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHH-------------
Confidence 55667778888877643 23457788888888888887 554 6788888888888888776321
Q ss_pred ccccccchhhhhCCCCCCEEEccCccccccCchH----HhhcCCCCCEEE
Q 042632 84 CNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTW----LLQNNTKLEILF 129 (659)
Q Consensus 84 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~~l~~L~~L~ 129 (659)
.-..+.++++|+.|.|..|.-.|.-+.. +..-+++|++||
T Consensus 80 ------EL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 80 ------ELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ------HHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2245677778888888877766544432 233456666553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00035 Score=65.08 Aligned_cols=108 Identities=24% Similarity=0.215 Sum_probs=60.1
Q ss_pred ccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEE
Q 042632 25 LSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYID 104 (659)
Q Consensus 25 ~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~ 104 (659)
...+..|+.|.+.+..++ ++. .|-.|++|+.|.++.|....... .+.....+++|++|+
T Consensus 39 ~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~------------------l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGG------------------LEVLAEKAPNLKVLN 97 (260)
T ss_pred cccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCccccccc------------------ceehhhhCCceeEEe
Confidence 444556666666666665 333 46677777777777774332211 222234457777777
Q ss_pred ccCccccc--cCchHHhhcCCCCCEEEccCcccccccCC----CCCCCCccEEEccc
Q 042632 105 LSHNNLAG--TIPTWLLQNNTKLEILFLFNNFLTGRLHL----PDSKRDLLHLVISN 155 (659)
Q Consensus 105 Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~~~L~~L~l~~ 155 (659)
+++|+++. .++. ...+.+|..|++.+|..+....- ...+++|+.|+-..
T Consensus 98 ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 98 LSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ecCCccccccccch--hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77777761 1221 23566677777777766542110 11455666665443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.61 E-value=0.00025 Score=76.64 Aligned_cols=64 Identities=22% Similarity=0.140 Sum_probs=30.5
Q ss_pred CCCCCCEEeCcCCc-CccccChhhhhCCCCCCEEEccCcc-ccccCCcC-CCCCCCCCEEEccCCCC
Q 042632 193 YMERLLFLDLSSNN-FSGELPKQFLTGCVSLEFMNLSHNL-FVGQIFPK-YMNLTQLAWLYLSDNQF 256 (659)
Q Consensus 193 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~l~~n~i 256 (659)
.+++|+.|+++.+. +++..-..+...+++|+.|.+.+|. +++..... ...++.|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34556666666655 3322222222335666666655554 33221111 23455566666666543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0012 Score=61.62 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=6.9
Q ss_pred CCCCCEEEccCCCCC
Q 042632 243 LTQLAWLYLSDNQFT 257 (659)
Q Consensus 243 l~~L~~L~l~~n~i~ 257 (659)
+++|+++++++|+|.
T Consensus 90 ~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIK 104 (260)
T ss_pred CCceeEEeecCCccc
Confidence 344444444444443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00048 Score=74.43 Aligned_cols=39 Identities=26% Similarity=0.133 Sum_probs=18.9
Q ss_pred CCCCCCEEEccCcc-ccccCchHHhhcCCCCCEEEccCcc
Q 042632 96 YQYDLRYIDLSHNN-LAGTIPTWLLQNNTKLEILFLFNNF 134 (659)
Q Consensus 96 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (659)
.+++|+.|+++++. +++..-..+...+++|++|.+.++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 34555566666555 4423333333345555555554444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00016 Score=67.52 Aligned_cols=84 Identities=27% Similarity=0.284 Sum_probs=61.2
Q ss_pred CCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccC
Q 042632 28 LTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSH 107 (659)
Q Consensus 28 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~ 107 (659)
+.+.+.|+.-+|.++ .|. ...+|+.|++|.||-|+|+. -+.+..|++|++|+|..
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIss----------------------L~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISS----------------------LAPLQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeecccccc----------------------chhHHHHHHHHHHHHHh
Confidence 456778888888887 554 56789999999999888873 24567788888888888
Q ss_pred ccccccCch-HHhhcCCCCCEEEccCccccc
Q 042632 108 NNLAGTIPT-WLLQNNTKLEILFLFNNFLTG 137 (659)
Q Consensus 108 n~l~~~~~~-~~~~~l~~L~~L~L~~n~i~~ 137 (659)
|.|. .+.. ....++++|+.|.|..|.-.+
T Consensus 73 N~I~-sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 73 NCIE-SLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred cccc-cHHHHHHHhcCchhhhHhhccCCccc
Confidence 8887 4433 334577777777777765443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.36 E-value=0.0068 Score=33.50 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=5.4
Q ss_pred CCEEeCCCCcCc
Q 042632 490 LHALNLSHNHFS 501 (659)
Q Consensus 490 L~~L~Ls~N~l~ 501 (659)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.35 E-value=0.007 Score=33.45 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=8.7
Q ss_pred CCEEECcCCcccccCChhh
Q 042632 514 IESMDLSYNELSGRIPLEL 532 (659)
Q Consensus 514 L~~L~Ls~N~l~~~~p~~l 532 (659)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444433
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.64 E-value=0.0028 Score=57.79 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=68.5
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
+...+.||++.|++. -.-..|..++.|..|+++.|++. ..|..+++...+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 566788888888887 44456778888888889888887 77888888888888888888887 7788888888888888
Q ss_pred ccCCccc
Q 042632 543 VSYNDLL 549 (659)
Q Consensus 543 l~~N~l~ 549 (659)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888764
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.51 E-value=0.082 Score=30.51 Aligned_cols=23 Identities=61% Similarity=0.782 Sum_probs=15.9
Q ss_pred CCCCCEEECCCCCCcCCCChhhhc
Q 042632 28 LTYLRVLNLSSNQLSGSLPISVFA 51 (659)
Q Consensus 28 l~~L~~L~Ls~n~l~~~l~~~~~~ 51 (659)
+++|++|+|++|++. .+|.+.|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777776 77766554
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.51 E-value=0.082 Score=30.51 Aligned_cols=23 Identities=61% Similarity=0.782 Sum_probs=15.9
Q ss_pred CCCCCEEECCCCCCcCCCChhhhc
Q 042632 28 LTYLRVLNLSSNQLSGSLPISVFA 51 (659)
Q Consensus 28 l~~L~~L~Ls~n~l~~~l~~~~~~ 51 (659)
+++|++|+|++|++. .+|.+.|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777776 77766554
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.48 E-value=0.046 Score=27.91 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=4.7
Q ss_pred CCCEEECCCCCCc
Q 042632 30 YLRVLNLSSNQLS 42 (659)
Q Consensus 30 ~L~~L~Ls~n~l~ 42 (659)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.76 E-value=0.0023 Score=58.37 Aligned_cols=87 Identities=22% Similarity=0.165 Sum_probs=44.9
Q ss_pred cccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEE
Q 042632 24 CLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYI 103 (659)
Q Consensus 24 ~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L 103 (659)
.+......+.||++.|++. .+. ..|..++.|..||++.|.+. ..|..++....++.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~---------------------~~~~d~~q~~e~~~~ 93 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIK---------------------FLPKDAKQQRETVNA 93 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHh---------------------hChhhHHHHHHHHHH
Confidence 3445556666666666654 444 45555666666666665544 233444444444455
Q ss_pred EccCccccccCchHHhhcCCCCCEEEccCccc
Q 042632 104 DLSHNNLAGTIPTWLLQNNTKLEILFLFNNFL 135 (659)
Q Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i 135 (659)
++..|..+ ..|.+.. ..++++++++..+.+
T Consensus 94 ~~~~n~~~-~~p~s~~-k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 94 ASHKNNHS-QQPKSQK-KEPHPKKNEQKKTEF 123 (326)
T ss_pred Hhhccchh-hCCcccc-ccCCcchhhhccCcc
Confidence 55555544 4444432 445555555555443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.59 E-value=0.077 Score=27.09 Aligned_cols=13 Identities=54% Similarity=0.836 Sum_probs=6.7
Q ss_pred CCCEEEccCcccc
Q 042632 99 DLRYIDLSHNNLA 111 (659)
Q Consensus 99 ~L~~L~Ls~n~l~ 111 (659)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666777776665
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.36 E-value=0.19 Score=28.90 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.8
Q ss_pred CCCCCEEEccCccccccCchHHh
Q 042632 97 QYDLRYIDLSHNNLAGTIPTWLL 119 (659)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~ 119 (659)
+++|++|+|++|.++ .+|..+|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 357889999999988 8888766
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.36 E-value=0.19 Score=28.90 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.8
Q ss_pred CCCCCEEEccCccccccCchHHh
Q 042632 97 QYDLRYIDLSHNNLAGTIPTWLL 119 (659)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~ 119 (659)
+++|++|+|++|.++ .+|..+|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 357889999999988 8888766
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.87 E-value=0.0036 Score=66.04 Aligned_cols=113 Identities=27% Similarity=0.292 Sum_probs=68.1
Q ss_pred CCCCcEEEcccCcccc----cCCh----hhcCCCCCCEEeCcCCcCccccC---hhhhhCCCC-CCEEEccCcccccc--
Q 042632 170 LPELVYLDMSQNSFVG----SIPP----STGYMERLLFLDLSSNNFSGELP---KQFLTGCVS-LEFMNLSHNLFVGQ-- 235 (659)
Q Consensus 170 l~~L~~L~L~~n~i~~----~~~~----~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~-L~~L~l~~n~i~~~-- 235 (659)
...++.++++.|.+.. .++. .+....++++|.+.+|.++...- ...+...+. +..+++..|++.+.
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 4556666666665521 1112 23346677788888877652111 111233344 66688888877643
Q ss_pred --CCcCCCCC-CCCCEEEccCCCCCcc----ccccccCCCCCcEEEeecccccC
Q 042632 236 --IFPKYMNL-TQLAWLYLSDNQFTGR----LEEGLLNAPSLYILDVSNNMLSG 282 (659)
Q Consensus 236 --~~~~~~~l-~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~ 282 (659)
..+.+..+ ..++.++++.|.|+.. ..+.+..++.++++.++.|.+.+
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12234444 6778899999988754 33455667889999999998874
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.84 E-value=0.002 Score=67.92 Aligned_cols=90 Identities=24% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCCccEEEcccCcCcccCChhhh---hcCCC-CcEEEcccCccccc----CChhhcCC-CCCCEEeCcCCcCccccChhh
Q 042632 145 KRDLLHLVISNNNFIGTLPDNFG---VILPE-LVYLDMSQNSFVGS----IPPSTGYM-ERLLFLDLSSNNFSGELPKQF 215 (659)
Q Consensus 145 ~~~L~~L~l~~n~l~~~~~~~~~---~~l~~-L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~ 215 (659)
..++++|++++|.++...-..+. ...+. +..|++..|.+.+. ....+..+ ..++.++++.|.++..-..+.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34555666666554422111111 11233 55577777766532 12233444 566778888887764332221
Q ss_pred ---hhCCCCCCEEEccCccccc
Q 042632 216 ---LTGCVSLEFMNLSHNLFVG 234 (659)
Q Consensus 216 ---~~~l~~L~~L~l~~n~i~~ 234 (659)
...++.++++.++.|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 2355677888888887654
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.66 E-value=0.05 Score=48.96 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=62.4
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCccc-CCcccc-ccCCCCEEECcCC-cccccCChhhhcCCCCCeE
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGS-IPRSFS-ILKMIESMDLSYN-ELSGRIPLELSELNYLAIF 541 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 541 (659)
.++.+|-++..|..+.-+.+..++.++.|.+.++.--+. --+.++ -.++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 478899999999988888889999999999998863211 001111 3589999999988 5776666778888888888
Q ss_pred eccCC
Q 042632 542 NVSYN 546 (659)
Q Consensus 542 ~l~~N 546 (659)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77654
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.76 E-value=0.073 Score=47.95 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=36.8
Q ss_pred CCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCC--C-CCCCCCCcEEEccCC-cCCCCCchhhhcCCCCceEe
Q 042632 294 LDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLE--F-SSNHSSLRHLFLHNN-SLNGNIPHLINEDSNLRALL 369 (659)
Q Consensus 294 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~-~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 369 (659)
++.++-++..|..+..+.+..++.++.|.+.+|.--+... . ....++|+.|++++| +|++..-.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4455555555544444444455555555555443221100 0 003345666666655 34444444555555666555
Q ss_pred cCC
Q 042632 370 LRG 372 (659)
Q Consensus 370 L~~ 372 (659)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.45 E-value=0.18 Score=28.40 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=7.0
Q ss_pred CCCCEEECcCCccccc
Q 042632 512 KMIESMDLSYNELSGR 527 (659)
Q Consensus 512 ~~L~~L~Ls~N~l~~~ 527 (659)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555433
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.86 E-value=2.6 Score=24.26 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=6.1
Q ss_pred CCCEEECCCCCCc
Q 042632 30 YLRVLNLSSNQLS 42 (659)
Q Consensus 30 ~L~~L~Ls~n~l~ 42 (659)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.80 E-value=2.8 Score=24.10 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=6.3
Q ss_pred cCCEEeCCCCcCc
Q 042632 489 ELHALNLSHNHFS 501 (659)
Q Consensus 489 ~L~~L~Ls~N~l~ 501 (659)
+|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555544
No 88
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=68.74 E-value=4.6 Score=34.44 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=4.8
Q ss_pred hhHHHHHHHHHHH
Q 042632 610 FAASYVAVILGLM 622 (659)
Q Consensus 610 ~~~~~~~~~~~~~ 622 (659)
+++++|+++++++
T Consensus 4 l~~iii~~i~l~~ 16 (130)
T PF12273_consen 4 LFAIIIVAILLFL 16 (130)
T ss_pred eHHHHHHHHHHHH
Confidence 3333333333333
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.89 E-value=4.8 Score=42.42 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=7.8
Q ss_pred CCCcEEEcccCccc
Q 042632 171 PELVYLDMSQNSFV 184 (659)
Q Consensus 171 ~~L~~L~L~~n~i~ 184 (659)
..|++|-+.+|++.
T Consensus 270 l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 270 LPLEELVLEGNPLC 283 (585)
T ss_pred CCHHHeeecCCccc
Confidence 34556666666553
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.43 E-value=6.7 Score=22.96 Aligned_cols=13 Identities=54% Similarity=0.728 Sum_probs=6.8
Q ss_pred CCCEEeCCCCcCc
Q 042632 6 NLVELNLSGNKFD 18 (659)
Q Consensus 6 ~L~~L~Ls~n~l~ 18 (659)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.02 E-value=32 Score=35.81 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=37.3
Q ss_pred cccEEEccCCcCcccCChh---hhccccCCEEeCCCCcCcc----cCCccccccCCCCEEECcCCccc
Q 042632 465 YMTGLDLSSNELTGDIPSE---IGLLQELHALNLSHNHFSG----SIPRSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~ 525 (659)
-++.+.++.|.+....-.. ...-+.+.+|++++|.... .+|.....-..++....+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3666777777776322222 2344678888888887652 23455555566666666666554
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.04 E-value=39 Score=35.21 Aligned_cols=89 Identities=21% Similarity=0.094 Sum_probs=48.7
Q ss_pred CCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccC
Q 042632 28 LTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSH 107 (659)
Q Consensus 28 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~ 107 (659)
-+.+++++++.|.+.+..| -.+.. ----+.++.|.++..+-.. +. .. ..-..+.+++++.
T Consensus 164 npr~r~~dls~npi~dkvp-ihl~~--p~~pl~lr~c~lsskfis~----l~-----------~q--sg~~~lteldls~ 223 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVP-IHLPQ--PGNPLSLRVCELSSKFISK----LL-----------IQ--SGRLWLTELDLST 223 (553)
T ss_pred cchhhhhccCCCcccccCC-ccccC--CCCccchhhhhhhhhHHHH----hh-----------hh--hcccccccccccc
Confidence 3568899999998876655 22211 1111666666655221100 00 00 1112478889999
Q ss_pred ccccccCchHHh--hcCCCCCEEEccCcccc
Q 042632 108 NNLAGTIPTWLL--QNNTKLEILFLFNNFLT 136 (659)
Q Consensus 108 n~l~~~~~~~~~--~~l~~L~~L~L~~n~i~ 136 (659)
|...+.+|..+- ..-..++.++.+...+.
T Consensus 224 n~~Kddip~~~n~~a~~~vl~~ld~s~tgir 254 (553)
T KOG4242|consen 224 NGGKDDIPRTLNKKAGTLVLFKLDRSTTGIR 254 (553)
T ss_pred CCCCccchhHHHHhhhhhhhhcccccccccc
Confidence 988877776432 22334666766665554
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=57.56 E-value=4.7 Score=50.97 Aligned_cols=38 Identities=21% Similarity=0.068 Sum_probs=33.2
Q ss_pred ECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC
Q 042632 518 DLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 518 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 555 (659)
||++|+|+...+..|..+++|+.|+|++|++.|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 68999999777788899999999999999999976543
No 94
>PRK00523 hypothetical protein; Provisional
Probab=55.51 E-value=26 Score=25.87 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 042632 607 NWSFAASYVAVILGLMAILLLNSYWRRQWFL 637 (659)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (659)
+++++++++++++++++.+++.+++-.+|+.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666777777777776666654
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.64 E-value=8.3 Score=40.72 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=45.6
Q ss_pred CCCCCCEEEccCccccccCc--hHHhhcCCCCCEEEccCc--ccccccCCCC-CCCCccEEEcccCcCcccCCh------
Q 042632 96 YQYDLRYIDLSHNNLAGTIP--TWLLQNNTKLEILFLFNN--FLTGRLHLPD-SKRDLLHLVISNNNFIGTLPD------ 164 (659)
Q Consensus 96 ~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n--~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~------ 164 (659)
+.+.+..+.|++|++. .+. ..+.+..++|+.|+|++| .+........ ....|++|-+.+|.+......
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3456666677777665 222 223445677777777777 3333222221 455677777777776544321
Q ss_pred hhhhcCCCCcEEE
Q 042632 165 NFGVILPELVYLD 177 (659)
Q Consensus 165 ~~~~~l~~L~~L~ 177 (659)
.+...+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 2233578888776
No 96
>PRK01844 hypothetical protein; Provisional
Probab=52.10 E-value=31 Score=25.47 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 042632 609 SFAASYVAVILGLMAILLLNSYWRRQWFL 637 (659)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (659)
+++++++++++++++.+++.+++-.+|+.
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777776666654
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=50.86 E-value=7.4 Score=49.35 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=29.9
Q ss_pred eCCCCcCcccCCccccccCCCCEEECcCCcccc
Q 042632 494 NLSHNHFSGSIPRSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 494 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
||++|+|+.+.+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999997777889999999999999999873
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.54 E-value=20 Score=29.88 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 042632 608 WSFAASYVAVILGLMAILLLN 628 (659)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~ 628 (659)
.++++|.++++++++++++|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=44.97 E-value=21 Score=32.66 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=14.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHH
Q 042632 602 DKVAFNWSFAASYVAVILGLMAILLLN 628 (659)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (659)
+...+++++++|.++++++++++.+.+
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHH
Confidence 344555555555555555555444443
No 100
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=43.60 E-value=42 Score=21.29 Aligned_cols=6 Identities=0% Similarity=0.036 Sum_probs=2.3
Q ss_pred hhHHHH
Q 042632 610 FAASYV 615 (659)
Q Consensus 610 ~~~~~~ 615 (659)
+.+|++
T Consensus 12 V~vg~~ 17 (38)
T PF02439_consen 12 VVVGMA 17 (38)
T ss_pred HHHHHH
Confidence 333333
No 101
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=41.79 E-value=49 Score=26.25 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.3
Q ss_pred hhhHHHHHHHH
Q 042632 609 SFAASYVAVIL 619 (659)
Q Consensus 609 ~~~~~~~~~~~ 619 (659)
.+.+|++++++
T Consensus 18 ~~LVGVv~~al 28 (102)
T PF15176_consen 18 PFLVGVVVTAL 28 (102)
T ss_pred HhHHHHHHHHH
Confidence 33444443333
No 102
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.53 E-value=19 Score=20.45 Aligned_cols=12 Identities=42% Similarity=0.459 Sum_probs=6.6
Q ss_pred CCCCEEECCCCC
Q 042632 29 TYLRVLNLSSNQ 40 (659)
Q Consensus 29 ~~L~~L~Ls~n~ 40 (659)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555554
No 103
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=40.96 E-value=33 Score=26.72 Aligned_cols=28 Identities=0% Similarity=-0.027 Sum_probs=13.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 042632 605 AFNWSFAASYVAVILGLMAILLLNSYWR 632 (659)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (659)
|.+++.+.|++++++++.++.+.+.+|+
T Consensus 42 WpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 3344445555555555444444444444
No 104
>PF15050 SCIMP: SCIMP protein
Probab=40.44 E-value=45 Score=27.25 Aligned_cols=9 Identities=11% Similarity=0.032 Sum_probs=3.4
Q ss_pred hhhhhHHHH
Q 042632 607 NWSFAASYV 615 (659)
Q Consensus 607 ~~~~~~~~~ 615 (659)
++++++.++
T Consensus 9 WiiLAVaII 17 (133)
T PF15050_consen 9 WIILAVAII 17 (133)
T ss_pred HHHHHHHHH
Confidence 333344433
No 105
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=39.52 E-value=29 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 042632 616 AVILGLMAILLLNSYWRRQWFLLVDAC 642 (659)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (659)
+.+.++.++.+.....+..|.+.+|..
T Consensus 10 ~iv~~lLg~~I~~~~K~ygYkht~d~~ 36 (50)
T PF12606_consen 10 FIVMGLLGLSICTTLKAYGYKHTVDPL 36 (50)
T ss_pred HHHHHHHHHHHHHHhhccccccccCCC
Confidence 333444444444555566777777763
No 106
>PRK14762 membrane protein; Provisional
Probab=39.17 E-value=49 Score=18.59 Aligned_cols=20 Identities=10% Similarity=0.380 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 042632 606 FNWSFAASYVAVILGLMAIL 625 (659)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~ 625 (659)
..|++++.|.++.+++.+++
T Consensus 4 ~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766665554
No 107
>PF15102 TMEM154: TMEM154 protein family
Probab=35.75 E-value=14 Score=31.61 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 042632 614 YVAVILGLMAILLLNSYWRR 633 (659)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~ 633 (659)
++++++++++++.+++|||.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHheeEEeeccc
Confidence 33333333333334444444
No 108
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=33.50 E-value=37 Score=25.89 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhc
Q 042632 620 GLMAILLLNSYWRRQWFLLVDACI 643 (659)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~ 643 (659)
+++...++..+.+.+-.+.+++..
T Consensus 20 IvvW~iv~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 20 IVVWTIVYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp HHHHHHH------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333344444444444444444443
No 109
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=33.23 E-value=1.1e+02 Score=20.20 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 042632 607 NWSFAASYVAVILGLMAILLL 627 (659)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~ 627 (659)
++.++.++++.+++.+.+..+
T Consensus 8 ~L~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 8 YLLLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555444444433
No 110
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=26.26 E-value=64 Score=24.59 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=11.8
Q ss_pred hhhhhhhHHHHHHHHHHH-HHHHHHhhhhh
Q 042632 605 AFNWSFAASYVAVILGLM-AILLLNSYWRR 633 (659)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 633 (659)
+++++++.+..++.+.+. ++++++.+|++
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 444444333333333333 33444444444
No 111
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.20 E-value=75 Score=27.01 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=10.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q 042632 605 AFNWSFAASYVAVILGLMAIL 625 (659)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~ 625 (659)
|..+++++++++++++++++.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444
No 112
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.12 E-value=30 Score=29.92 Aligned_cols=7 Identities=0% Similarity=-0.268 Sum_probs=2.7
Q ss_pred hhhHHHH
Q 042632 609 SFAASYV 615 (659)
Q Consensus 609 ~~~~~~~ 615 (659)
++++|..
T Consensus 55 VVGVGg~ 61 (154)
T PF04478_consen 55 VVGVGGP 61 (154)
T ss_pred EecccHH
Confidence 3344433
No 113
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=22.26 E-value=53 Score=23.19 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 042632 617 VILGLMAILLLNSYWRRQWFLLVDACIDS 645 (659)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (659)
++-++++.+++.++-|.++|.++-++|-+
T Consensus 19 ~~GvlAlPvMLf~~dRArfYSyLhrvW~K 47 (63)
T PF10725_consen 19 LAGVLALPVMLFRSDRARFYSYLHRVWSK 47 (63)
T ss_pred HHHHhhhheeeeecchhHHHHHHHHHHHh
Confidence 33334444555567889999999888743
No 114
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=21.36 E-value=42 Score=27.84 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhh
Q 042632 622 MAILLLNSYWRRQW 635 (659)
Q Consensus 622 ~~~~~~~~~~~~~~ 635 (659)
.+++++++..|+.-
T Consensus 96 sg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 96 SGFLVWRRCRRREK 109 (129)
T ss_dssp --------------
T ss_pred HHHHHHhhhhcccc
Confidence 34444444444333
No 115
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.18 E-value=1e+02 Score=23.74 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh
Q 042632 613 SYVAVILGLMAILLLNSYWRRQWFLL 638 (659)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (659)
.|+.+++..++...-+++-|+.-|+.
T Consensus 43 iFil~VilwfvCC~kRkrsRrPIYrP 68 (94)
T PF05393_consen 43 IFILLVILWFVCCKKRKRSRRPIYRP 68 (94)
T ss_pred HHHHHHHHHHHHHHHhhhccCCcccc
Confidence 33333333333333344444555543
Done!